Query 042811
Match_columns 130
No_of_seqs 122 out of 1350
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 09:44:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042811.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042811hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 99.9 3.6E-22 7.8E-27 169.9 6.7 105 26-130 105-224 (889)
2 PF00931 NB-ARC: NB-ARC domain 99.1 3.3E-11 7.1E-16 90.5 3.8 38 91-129 24-62 (287)
3 PLN03210 Resistant to P. syrin 99.1 2.5E-10 5.5E-15 100.5 6.3 95 4-123 133-241 (1153)
4 PRK09376 rho transcription ter 98.6 3.6E-08 7.8E-13 78.0 3.6 36 91-128 174-210 (416)
5 cd01128 rho_factor Transcripti 98.6 5.5E-08 1.2E-12 72.8 3.6 36 90-127 20-56 (249)
6 PRK08118 topology modulation p 98.2 6E-07 1.3E-11 63.3 1.4 38 88-126 3-45 (167)
7 TIGR00767 rho transcription te 97.9 1.2E-05 2.5E-10 64.1 3.8 35 91-127 173-208 (415)
8 PRK11331 5-methylcytosine-spec 97.8 1.6E-05 3.4E-10 64.1 3.7 38 91-129 199-237 (459)
9 PRK07261 topology modulation p 97.6 3.1E-05 6.7E-10 54.7 2.4 34 89-122 3-36 (171)
10 PF13207 AAA_17: AAA domain; P 97.5 5.1E-05 1.1E-09 49.9 1.7 20 91-110 4-23 (121)
11 COG2256 MGS1 ATPase related to 97.5 2.7E-05 5.8E-10 61.8 0.1 25 91-118 53-77 (436)
12 PF13191 AAA_16: AAA ATPase do 97.4 3.1E-05 6.8E-10 54.1 -0.2 21 90-110 28-48 (185)
13 PRK00411 cdc6 cell division co 97.4 5.2E-05 1.1E-09 59.6 0.9 20 91-110 60-79 (394)
14 TIGR02928 orc1/cdc6 family rep 97.3 8.7E-05 1.9E-09 57.7 1.2 20 91-110 45-64 (365)
15 KOG2028 ATPase related to the 97.2 0.00011 2.4E-09 58.1 1.0 20 91-110 167-186 (554)
16 PF05496 RuvB_N: Holliday junc 97.2 0.00014 2.9E-09 53.9 1.4 21 90-110 54-74 (233)
17 cd00009 AAA The AAA+ (ATPases 97.2 0.00038 8.3E-09 45.8 3.2 21 90-110 23-43 (151)
18 TIGR03420 DnaA_homol_Hda DnaA 97.2 0.00025 5.5E-09 51.4 2.4 34 90-126 42-75 (226)
19 TIGR03015 pepcterm_ATPase puta 97.1 0.00026 5.6E-09 52.7 1.8 22 89-110 46-67 (269)
20 PRK06893 DNA replication initi 97.1 0.00032 7E-09 51.7 2.3 33 91-126 44-76 (229)
21 PRK03839 putative kinase; Prov 97.1 0.00031 6.7E-09 49.6 1.9 21 89-109 3-23 (180)
22 PRK05541 adenylylsulfate kinas 97.1 0.00049 1.1E-08 48.4 2.8 21 90-110 11-31 (176)
23 TIGR02903 spore_lon_C ATP-depe 97.0 0.00037 8E-09 58.4 2.3 35 91-126 180-217 (615)
24 PF05729 NACHT: NACHT domain 97.0 0.00076 1.6E-08 46.0 3.5 37 90-126 4-43 (166)
25 PF01637 Arch_ATPase: Archaeal 97.0 9.8E-05 2.1E-09 53.0 -1.1 20 91-110 25-44 (234)
26 COG1618 Predicted nucleotide k 97.0 0.00072 1.6E-08 47.8 3.1 29 91-121 10-38 (179)
27 COG2255 RuvB Holliday junction 97.0 0.00046 1E-08 52.8 2.0 27 84-110 50-76 (332)
28 PF01583 APS_kinase: Adenylyls 96.9 0.00044 9.6E-09 48.4 1.7 22 89-110 5-26 (156)
29 TIGR00635 ruvB Holliday juncti 96.9 0.00015 3.3E-09 55.1 -0.6 22 89-110 33-54 (305)
30 PF00910 RNA_helicase: RNA hel 96.9 0.00051 1.1E-08 44.8 1.9 22 90-111 2-23 (107)
31 smart00382 AAA ATPases associa 96.9 0.00049 1.1E-08 44.7 1.8 21 90-110 6-26 (148)
32 PRK06762 hypothetical protein; 96.9 0.00053 1.2E-08 47.6 1.9 21 90-110 6-26 (166)
33 PF10662 PduV-EutP: Ethanolami 96.9 0.00046 1E-08 47.7 1.6 26 87-112 2-27 (143)
34 PRK06217 hypothetical protein; 96.9 0.00052 1.1E-08 48.7 1.9 23 88-110 3-25 (183)
35 PRK00625 shikimate kinase; Pro 96.9 0.00055 1.2E-08 48.6 1.9 21 89-109 3-23 (173)
36 PF04665 Pox_A32: Poxvirus A32 96.9 0.001 2.3E-08 49.7 3.5 32 91-125 18-49 (241)
37 PRK05480 uridine/cytidine kina 96.9 0.00058 1.3E-08 49.3 1.9 20 91-110 11-30 (209)
38 PRK13342 recombination factor 96.9 0.00022 4.8E-09 56.9 -0.3 20 91-110 41-60 (413)
39 TIGR00235 udk uridine kinase. 96.9 0.00057 1.2E-08 49.4 1.8 20 91-110 11-30 (207)
40 PRK08233 hypothetical protein; 96.8 0.00061 1.3E-08 47.6 1.8 20 91-110 8-27 (182)
41 PRK00131 aroK shikimate kinase 96.8 0.00063 1.4E-08 47.1 1.9 22 89-110 7-28 (175)
42 PF13173 AAA_14: AAA domain 96.8 0.00075 1.6E-08 45.1 1.9 20 91-110 7-26 (128)
43 PTZ00301 uridine kinase; Provi 96.8 0.0012 2.5E-08 48.4 3.0 20 91-110 8-27 (210)
44 PRK13947 shikimate kinase; Pro 96.8 0.00078 1.7E-08 46.9 1.9 21 89-109 4-24 (171)
45 COG1100 GTPase SAR1 and relate 96.7 0.00079 1.7E-08 48.4 1.6 22 89-110 8-29 (219)
46 PF08477 Miro: Miro-like prote 96.7 0.001 2.2E-08 43.2 1.8 21 90-110 3-23 (119)
47 PRK13949 shikimate kinase; Pro 96.7 0.0011 2.3E-08 46.8 1.9 22 88-109 3-24 (169)
48 PRK10078 ribose 1,5-bisphospho 96.6 0.001 2.2E-08 47.3 1.8 21 90-110 6-26 (186)
49 PRK06620 hypothetical protein; 96.6 0.0011 2.3E-08 48.6 1.8 22 89-110 47-68 (214)
50 TIGR02322 phosphon_PhnN phosph 96.6 0.0011 2.5E-08 46.5 1.8 19 91-109 6-24 (179)
51 PRK08084 DNA replication initi 96.6 0.0016 3.5E-08 48.2 2.6 20 91-110 50-69 (235)
52 TIGR02881 spore_V_K stage V sp 96.6 0.0019 4.2E-08 48.3 2.8 21 90-110 46-66 (261)
53 PRK04040 adenylate kinase; Pro 96.5 0.0013 2.9E-08 47.2 1.8 20 91-110 7-26 (188)
54 PRK06547 hypothetical protein; 96.5 0.0015 3.3E-08 46.3 1.8 20 91-110 20-39 (172)
55 PF13401 AAA_22: AAA domain; P 96.5 0.0014 3E-08 43.3 1.6 36 91-126 9-46 (131)
56 PRK06851 hypothetical protein; 96.5 0.0085 1.8E-07 47.4 6.1 35 91-127 219-253 (367)
57 PHA00729 NTP-binding motif con 96.5 0.0016 3.5E-08 48.2 1.9 23 88-110 19-41 (226)
58 PRK08727 hypothetical protein; 96.5 0.0023 5E-08 47.3 2.8 34 89-125 44-77 (233)
59 PRK05642 DNA replication initi 96.5 0.0027 5.9E-08 46.9 3.1 21 90-110 49-69 (234)
60 TIGR01360 aden_kin_iso1 adenyl 96.4 0.0017 3.8E-08 45.5 1.9 21 89-109 6-26 (188)
61 cd00227 CPT Chloramphenicol (C 96.4 0.0018 3.9E-08 45.5 1.9 21 90-110 6-26 (175)
62 cd02019 NK Nucleoside/nucleoti 96.4 0.0021 4.5E-08 38.6 1.9 19 91-109 4-22 (69)
63 PRK12377 putative replication 96.4 0.0022 4.9E-08 48.1 2.4 35 89-126 104-138 (248)
64 PF00308 Bac_DnaA: Bacterial d 96.4 0.0032 7E-08 46.2 3.1 23 89-111 37-59 (219)
65 PRK05057 aroK shikimate kinase 96.4 0.0019 4.1E-08 45.6 1.8 22 89-110 7-28 (172)
66 PRK00080 ruvB Holliday junctio 96.4 0.0018 4E-08 50.0 1.8 21 90-110 55-75 (328)
67 COG0563 Adk Adenylate kinase a 96.4 0.002 4.3E-08 46.0 1.8 21 89-109 3-23 (178)
68 PRK08116 hypothetical protein; 96.4 0.0025 5.4E-08 48.2 2.5 34 89-125 117-150 (268)
69 PRK03731 aroL shikimate kinase 96.4 0.0021 4.5E-08 44.8 1.9 22 89-110 5-26 (171)
70 PRK13975 thymidylate kinase; P 96.4 0.0021 4.5E-08 45.7 1.9 20 91-110 7-26 (196)
71 cd04139 RalA_RalB RalA/RalB su 96.4 0.002 4.3E-08 43.7 1.8 20 89-108 3-22 (164)
72 PRK03846 adenylylsulfate kinas 96.4 0.002 4.3E-08 46.3 1.8 21 90-110 28-48 (198)
73 TIGR03263 guanyl_kin guanylate 96.4 0.002 4.3E-08 45.2 1.8 19 91-109 6-24 (180)
74 PRK09087 hypothetical protein; 96.4 0.002 4.4E-08 47.5 1.9 20 90-109 48-67 (226)
75 PRK08903 DnaA regulatory inact 96.4 0.002 4.4E-08 47.0 1.9 21 90-110 46-66 (227)
76 PRK13695 putative NTPase; Prov 96.3 0.0022 4.7E-08 45.0 1.9 20 90-109 4-23 (174)
77 PRK13946 shikimate kinase; Pro 96.3 0.0022 4.7E-08 45.6 1.9 22 89-110 13-34 (184)
78 TIGR01242 26Sp45 26S proteasom 96.3 0.0023 4.9E-08 50.2 2.0 20 91-110 161-180 (364)
79 PRK00889 adenylylsulfate kinas 96.3 0.0024 5.2E-08 44.8 1.9 22 89-110 7-28 (175)
80 PRK06696 uridine kinase; Valid 96.3 0.0023 5E-08 46.8 1.9 20 91-110 27-46 (223)
81 COG1428 Deoxynucleoside kinase 96.3 0.0022 4.9E-08 47.0 1.7 20 91-110 9-28 (216)
82 TIGR02237 recomb_radB DNA repa 96.3 0.0046 1E-07 44.4 3.2 32 91-125 17-48 (209)
83 PRK07952 DNA replication prote 96.2 0.0035 7.5E-08 46.9 2.6 35 89-126 102-136 (244)
84 PRK13341 recombination factor 96.2 0.0027 5.8E-08 54.3 2.2 20 91-110 57-76 (725)
85 PRK00300 gmk guanylate kinase; 96.2 0.0027 5.8E-08 45.5 1.8 20 91-110 10-29 (205)
86 cd04155 Arl3 Arl3 subfamily. 96.2 0.0026 5.7E-08 43.8 1.7 20 90-109 18-37 (173)
87 cd01983 Fer4_NifH The Fer4_Nif 96.2 0.0029 6.2E-08 39.0 1.7 20 91-110 4-23 (99)
88 TIGR00231 small_GTP small GTP- 96.2 0.0029 6.2E-08 41.9 1.7 21 90-110 5-25 (161)
89 TIGR01287 nifH nitrogenase iro 96.2 0.0026 5.6E-08 47.8 1.6 17 91-107 5-21 (275)
90 PRK14530 adenylate kinase; Pro 96.2 0.003 6.5E-08 45.9 1.9 22 89-110 6-27 (215)
91 PF00005 ABC_tran: ABC transpo 96.2 0.0027 5.9E-08 42.4 1.5 20 91-110 16-35 (137)
92 cd01862 Rab7 Rab7 subfamily. 96.2 0.003 6.4E-08 43.3 1.7 21 89-109 3-23 (172)
93 PF01926 MMR_HSR1: 50S ribosom 96.2 0.0029 6.2E-08 41.2 1.6 19 91-109 4-22 (116)
94 cd04113 Rab4 Rab4 subfamily. 96.1 0.0031 6.7E-08 43.0 1.8 20 89-108 3-22 (161)
95 cd04119 RJL RJL (RabJ-Like) su 96.1 0.0032 6.9E-08 42.8 1.8 20 90-109 4-23 (168)
96 COG1125 OpuBA ABC-type proline 96.1 0.003 6.5E-08 47.9 1.7 20 91-110 32-51 (309)
97 CHL00181 cbbX CbbX; Provisiona 96.1 0.0056 1.2E-07 46.8 3.0 21 90-110 63-83 (287)
98 KOG1532 GTPase XAB1, interacts 96.1 0.0027 5.9E-08 48.6 1.3 21 90-110 23-43 (366)
99 cd00154 Rab Rab family. Rab G 96.1 0.0037 8E-08 41.7 1.8 22 89-110 3-24 (159)
100 COG1116 TauB ABC-type nitrate/ 96.1 0.0034 7.3E-08 47.1 1.7 20 91-110 34-53 (248)
101 cd00879 Sar1 Sar1 subfamily. 96.0 0.0036 7.8E-08 44.0 1.7 22 88-109 21-42 (190)
102 PTZ00202 tuzin; Provisional 96.0 0.0018 3.8E-08 52.7 0.2 20 91-110 291-310 (550)
103 PRK14088 dnaA chromosomal repl 96.0 0.0054 1.2E-07 49.6 2.9 34 90-125 134-168 (440)
104 PRK14531 adenylate kinase; Pro 96.0 0.0038 8.2E-08 44.3 1.8 23 88-110 4-26 (183)
105 PRK13948 shikimate kinase; Pro 96.0 0.004 8.6E-08 44.6 1.9 21 90-110 14-34 (182)
106 cd00820 PEPCK_HprK Phosphoenol 96.0 0.0037 8E-08 41.1 1.6 17 91-107 20-36 (107)
107 PRK14532 adenylate kinase; Pro 96.0 0.0039 8.4E-08 44.1 1.8 20 89-108 3-22 (188)
108 cd04138 H_N_K_Ras_like H-Ras/N 96.0 0.0039 8.5E-08 42.1 1.8 21 89-109 4-24 (162)
109 TIGR00362 DnaA chromosomal rep 96.0 0.0071 1.5E-07 48.1 3.5 20 91-110 141-160 (405)
110 PRK13230 nitrogenase reductase 96.0 0.0036 7.8E-08 47.2 1.6 19 91-109 6-24 (279)
111 PRK13768 GTPase; Provisional 96.0 0.0035 7.7E-08 46.9 1.6 21 90-110 6-26 (253)
112 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.0 0.0039 8.3E-08 45.1 1.7 20 91-110 35-54 (218)
113 PRK12422 chromosomal replicati 96.0 0.0057 1.2E-07 49.5 2.8 20 91-110 146-165 (445)
114 PRK07667 uridine kinase; Provi 95.9 0.0043 9.4E-08 44.5 1.8 20 91-110 22-41 (193)
115 cd00157 Rho Rho (Ras homology) 95.9 0.0043 9.4E-08 42.5 1.8 20 90-109 4-23 (171)
116 smart00175 RAB Rab subfamily o 95.9 0.0043 9.3E-08 42.1 1.7 21 89-109 3-23 (164)
117 TIGR01618 phage_P_loop phage n 95.9 0.0038 8.2E-08 46.1 1.4 20 89-108 15-34 (220)
118 COG1120 FepC ABC-type cobalami 95.9 0.0042 9.2E-08 46.9 1.7 24 87-110 28-52 (258)
119 PRK12339 2-phosphoglycerate ki 95.9 0.0047 1E-07 44.7 1.9 20 91-110 8-27 (197)
120 PRK14961 DNA polymerase III su 95.9 0.002 4.3E-08 50.6 -0.1 20 91-110 43-62 (363)
121 TIGR02880 cbbX_cfxQ probable R 95.9 0.0082 1.8E-07 45.7 3.2 22 89-110 61-82 (284)
122 TIGR00960 3a0501s02 Type II (G 95.9 0.0045 9.8E-08 44.8 1.7 20 91-110 34-53 (216)
123 PRK10751 molybdopterin-guanine 95.9 0.0047 1E-07 43.9 1.8 20 91-110 11-30 (173)
124 COG3640 CooC CO dehydrogenase 95.9 0.0044 9.5E-08 46.3 1.6 16 91-106 5-20 (255)
125 cd03225 ABC_cobalt_CbiO_domain 95.9 0.0047 1E-07 44.5 1.8 20 91-110 32-51 (211)
126 PRK06835 DNA replication prote 95.9 0.0063 1.4E-07 47.4 2.6 37 87-126 184-220 (329)
127 PRK06526 transposase; Provisio 95.9 0.0046 9.9E-08 46.5 1.7 24 88-111 100-123 (254)
128 PRK04182 cytidylate kinase; Pr 95.9 0.0051 1.1E-07 42.8 1.9 19 90-108 4-22 (180)
129 COG0003 ArsA Predicted ATPase 95.9 0.0037 7.9E-08 48.7 1.2 15 91-105 7-21 (322)
130 COG0194 Gmk Guanylate kinase [ 95.9 0.0051 1.1E-07 44.3 1.8 20 91-110 9-28 (191)
131 TIGR01166 cbiO cobalt transpor 95.8 0.0049 1.1E-07 43.7 1.7 20 91-110 23-42 (190)
132 smart00173 RAS Ras subfamily o 95.8 0.0052 1.1E-07 41.9 1.8 20 89-108 3-22 (164)
133 PRK13531 regulatory ATPase Rav 95.8 0.0024 5.2E-08 52.2 0.2 20 91-110 44-63 (498)
134 COG0572 Udk Uridine kinase [Nu 95.8 0.0052 1.1E-07 45.3 1.9 20 91-110 13-32 (218)
135 PRK00149 dnaA chromosomal repl 95.8 0.0097 2.1E-07 48.0 3.6 20 91-110 153-172 (450)
136 KOG3347 Predicted nucleotide k 95.8 0.005 1.1E-07 43.1 1.7 25 85-109 6-30 (176)
137 PF03205 MobB: Molybdopterin g 95.8 0.005 1.1E-07 42.2 1.7 23 90-112 4-26 (140)
138 TIGR02528 EutP ethanolamine ut 95.8 0.005 1.1E-07 41.2 1.7 21 89-109 3-23 (142)
139 COG1126 GlnQ ABC-type polar am 95.8 0.0051 1.1E-07 45.5 1.8 20 91-110 33-52 (240)
140 PRK09825 idnK D-gluconate kina 95.8 0.0054 1.2E-07 43.5 1.8 21 90-110 7-27 (176)
141 cd03269 ABC_putative_ATPase Th 95.8 0.0051 1.1E-07 44.3 1.7 20 91-110 31-50 (210)
142 TIGR02902 spore_lonB ATP-depen 95.8 0.004 8.6E-08 51.4 1.3 20 91-110 91-110 (531)
143 cd01133 F1-ATPase_beta F1 ATP 95.8 0.0085 1.8E-07 45.6 2.9 32 91-125 74-106 (274)
144 PRK09270 nucleoside triphospha 95.8 0.0054 1.2E-07 45.0 1.8 20 91-110 38-57 (229)
145 cd03261 ABC_Org_Solvent_Resist 95.8 0.0053 1.1E-07 45.0 1.8 20 91-110 31-50 (235)
146 cd03293 ABC_NrtD_SsuB_transpor 95.8 0.0054 1.2E-07 44.5 1.8 20 91-110 35-54 (220)
147 cd03238 ABC_UvrA The excision 95.8 0.0054 1.2E-07 43.6 1.7 18 91-108 26-43 (176)
148 TIGR01281 DPOR_bchL light-inde 95.8 0.005 1.1E-07 46.0 1.6 16 91-106 5-20 (268)
149 cd01864 Rab19 Rab19 subfamily. 95.8 0.0057 1.2E-07 41.9 1.8 20 89-108 6-25 (165)
150 PRK06921 hypothetical protein; 95.8 0.0079 1.7E-07 45.5 2.6 36 88-125 119-154 (266)
151 COG0467 RAD55 RecA-superfamily 95.8 0.011 2.4E-07 44.2 3.4 33 91-126 28-60 (260)
152 cd03259 ABC_Carb_Solutes_like 95.8 0.0056 1.2E-07 44.2 1.8 20 91-110 31-50 (213)
153 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 95.7 0.0058 1.3E-07 41.9 1.7 21 89-109 5-25 (166)
154 PRK08181 transposase; Validate 95.7 0.0057 1.2E-07 46.4 1.8 35 88-125 108-142 (269)
155 cd02034 CooC The accessory pro 95.7 0.0065 1.4E-07 40.3 1.9 20 91-110 4-23 (116)
156 cd02040 NifH NifH gene encodes 95.7 0.005 1.1E-07 45.8 1.5 19 91-109 6-24 (270)
157 cd03263 ABC_subfamily_A The AB 95.7 0.0057 1.2E-07 44.3 1.8 20 91-110 33-52 (220)
158 PRK03992 proteasome-activating 95.7 0.0061 1.3E-07 48.4 2.0 20 91-110 170-189 (389)
159 cd01860 Rab5_related Rab5-rela 95.7 0.006 1.3E-07 41.5 1.8 21 89-109 4-24 (163)
160 cd03264 ABC_drug_resistance_li 95.7 0.0057 1.2E-07 44.1 1.7 20 91-110 30-49 (211)
161 cd03260 ABC_PstB_phosphate_tra 95.7 0.0059 1.3E-07 44.5 1.8 20 91-110 31-50 (227)
162 PF02374 ArsA_ATPase: Anion-tr 95.7 0.005 1.1E-07 47.5 1.5 16 91-106 6-21 (305)
163 cd01672 TMPK Thymidine monopho 95.7 0.0063 1.4E-07 42.8 1.9 20 91-110 5-24 (200)
164 cd03226 ABC_cobalt_CbiO_domain 95.7 0.0059 1.3E-07 43.9 1.7 20 91-110 31-50 (205)
165 COG3842 PotA ABC-type spermidi 95.7 0.0055 1.2E-07 48.2 1.7 18 91-108 36-53 (352)
166 TIGR02673 FtsE cell division A 95.7 0.0059 1.3E-07 44.0 1.7 20 91-110 33-52 (214)
167 cd03229 ABC_Class3 This class 95.7 0.0062 1.3E-07 42.9 1.8 20 91-110 31-50 (178)
168 cd04124 RabL2 RabL2 subfamily. 95.7 0.0064 1.4E-07 41.8 1.8 18 90-107 4-21 (161)
169 cd03256 ABC_PhnC_transporter A 95.7 0.006 1.3E-07 44.7 1.7 20 91-110 32-51 (241)
170 COG1124 DppF ABC-type dipeptid 95.7 0.0058 1.3E-07 45.7 1.6 20 91-110 38-57 (252)
171 cd04140 ARHI_like ARHI subfami 95.7 0.0064 1.4E-07 41.8 1.8 20 90-109 5-24 (165)
172 cd04177 RSR1 RSR1 subgroup. R 95.7 0.0064 1.4E-07 41.9 1.8 19 90-108 5-23 (168)
173 cd03265 ABC_DrrA DrrA is the A 95.7 0.0062 1.3E-07 44.2 1.8 20 91-110 31-50 (220)
174 PRK09361 radB DNA repair and r 95.7 0.011 2.5E-07 42.9 3.2 32 91-125 28-59 (225)
175 cd03292 ABC_FtsE_transporter F 95.7 0.0062 1.3E-07 43.9 1.7 20 91-110 32-51 (214)
176 PTZ00088 adenylate kinase 1; P 95.7 0.0067 1.4E-07 45.0 1.9 22 89-110 9-30 (229)
177 TIGR02315 ABC_phnC phosphonate 95.7 0.0063 1.4E-07 44.7 1.7 20 91-110 33-52 (243)
178 PRK06761 hypothetical protein; 95.7 0.0066 1.4E-07 46.4 1.9 31 90-122 7-37 (282)
179 CHL00072 chlL photochlorophyll 95.6 0.0061 1.3E-07 46.6 1.7 16 91-106 5-20 (290)
180 PHA02530 pseT polynucleotide k 95.6 0.0065 1.4E-07 46.0 1.8 20 91-110 7-26 (300)
181 cd03235 ABC_Metallic_Cations A 95.6 0.0064 1.4E-07 43.9 1.7 20 91-110 30-49 (213)
182 cd04150 Arf1_5_like Arf1-Arf5- 95.6 0.0066 1.4E-07 41.7 1.7 18 89-106 3-20 (159)
183 cd03297 ABC_ModC_molybdenum_tr 95.6 0.0065 1.4E-07 43.9 1.7 21 90-110 27-47 (214)
184 PF05673 DUF815: Protein of un 95.6 0.0025 5.5E-08 47.8 -0.5 20 91-110 57-76 (249)
185 PRK14493 putative bifunctional 95.6 0.0065 1.4E-07 46.2 1.7 20 91-110 6-25 (274)
186 cd02117 NifH_like This family 95.6 0.0065 1.4E-07 44.0 1.6 16 91-106 5-20 (212)
187 cd03258 ABC_MetN_methionine_tr 95.6 0.0067 1.4E-07 44.4 1.7 20 91-110 36-55 (233)
188 COG1484 DnaC DNA replication p 95.6 0.0098 2.1E-07 44.7 2.6 35 89-126 108-142 (254)
189 cd03257 ABC_NikE_OppD_transpor 95.6 0.0067 1.5E-07 44.0 1.7 20 91-110 36-55 (228)
190 COG3839 MalK ABC-type sugar tr 95.6 0.0065 1.4E-07 47.6 1.7 20 91-110 34-53 (338)
191 COG1136 SalX ABC-type antimicr 95.6 0.0071 1.5E-07 44.8 1.8 20 91-110 36-55 (226)
192 TIGR02211 LolD_lipo_ex lipopro 95.6 0.0071 1.5E-07 43.8 1.8 20 91-110 36-55 (221)
193 cd04123 Rab21 Rab21 subfamily. 95.6 0.0075 1.6E-07 40.7 1.8 21 89-109 3-23 (162)
194 cd03301 ABC_MalK_N The N-termi 95.6 0.0071 1.5E-07 43.6 1.8 20 91-110 31-50 (213)
195 PRK14738 gmk guanylate kinase; 95.6 0.0072 1.6E-07 43.8 1.8 19 91-109 18-36 (206)
196 PRK13232 nifH nitrogenase redu 95.6 0.0067 1.5E-07 45.6 1.7 18 91-108 6-23 (273)
197 TIGR02770 nickel_nikD nickel i 95.6 0.0071 1.5E-07 44.3 1.7 20 91-110 17-36 (230)
198 cd04101 RabL4 RabL4 (Rab-like4 95.6 0.0075 1.6E-07 41.1 1.7 19 89-107 3-21 (164)
199 PRK13541 cytochrome c biogenes 95.6 0.0072 1.6E-07 43.2 1.7 20 91-110 31-50 (195)
200 cd01898 Obg Obg subfamily. Th 95.6 0.0074 1.6E-07 41.3 1.7 21 89-109 3-23 (170)
201 PRK11629 lolD lipoprotein tran 95.6 0.0072 1.6E-07 44.3 1.8 20 91-110 40-59 (233)
202 cd03296 ABC_CysA_sulfate_impor 95.6 0.0072 1.6E-07 44.4 1.7 20 91-110 33-52 (239)
203 cd03278 ABC_SMC_barmotin Barmo 95.6 0.0074 1.6E-07 43.5 1.8 18 91-108 27-44 (197)
204 PRK10584 putative ABC transpor 95.6 0.0074 1.6E-07 44.0 1.8 20 91-110 41-60 (228)
205 PRK14527 adenylate kinase; Pro 95.5 0.008 1.7E-07 42.8 1.9 22 89-110 9-30 (191)
206 cd01861 Rab6 Rab6 subfamily. 95.5 0.0077 1.7E-07 40.8 1.7 21 89-109 3-23 (161)
207 TIGR03499 FlhF flagellar biosy 95.5 0.011 2.3E-07 45.1 2.7 20 91-110 199-218 (282)
208 cd03266 ABC_NatA_sodium_export 95.5 0.0073 1.6E-07 43.7 1.7 20 91-110 36-55 (218)
209 TIGR01184 ntrCD nitrate transp 95.5 0.0075 1.6E-07 44.2 1.8 20 91-110 16-35 (230)
210 TIGR01978 sufC FeS assembly AT 95.5 0.0073 1.6E-07 44.3 1.7 19 91-109 31-49 (243)
211 TIGR03608 L_ocin_972_ABC putat 95.5 0.0075 1.6E-07 43.2 1.7 20 91-110 29-48 (206)
212 TIGR02173 cyt_kin_arch cytidyl 95.5 0.0083 1.8E-07 41.4 1.9 19 90-108 4-22 (171)
213 COG0593 DnaA ATPase involved i 95.5 0.008 1.7E-07 48.2 2.0 20 91-110 118-137 (408)
214 cd03115 SRP The signal recogni 95.5 0.0077 1.7E-07 42.0 1.7 19 91-109 5-23 (173)
215 cd03222 ABC_RNaseL_inhibitor T 95.5 0.007 1.5E-07 43.1 1.5 20 91-110 30-49 (177)
216 cd01878 HflX HflX subfamily. 95.5 0.0079 1.7E-07 42.9 1.8 21 90-110 45-65 (204)
217 TIGR03864 PQQ_ABC_ATP ABC tran 95.5 0.0078 1.7E-07 44.2 1.8 20 91-110 32-51 (236)
218 PRK02496 adk adenylate kinase; 95.5 0.0086 1.9E-07 42.3 1.9 21 89-109 4-24 (184)
219 CHL00095 clpC Clp protease ATP 95.5 0.0032 7E-08 54.5 -0.3 32 79-110 181-224 (821)
220 PRK14963 DNA polymerase III su 95.5 0.0068 1.5E-07 49.8 1.6 20 91-110 41-60 (504)
221 cd03219 ABC_Mj1267_LivG_branch 95.5 0.0077 1.7E-07 44.1 1.7 20 91-110 31-50 (236)
222 PRK14490 putative bifunctional 95.5 0.017 3.7E-07 45.5 3.7 21 90-110 9-29 (369)
223 cd04114 Rab30 Rab30 subfamily. 95.5 0.0081 1.7E-07 41.1 1.7 20 89-108 10-29 (169)
224 TIGR02640 gas_vesic_GvpN gas v 95.5 0.008 1.7E-07 45.2 1.8 21 90-110 25-45 (262)
225 cd03224 ABC_TM1139_LivF_branch 95.5 0.008 1.7E-07 43.5 1.7 20 91-110 31-50 (222)
226 PRK00454 engB GTP-binding prot 95.5 0.0081 1.8E-07 42.3 1.7 21 89-109 27-47 (196)
227 PRK13538 cytochrome c biogenes 95.5 0.0082 1.8E-07 43.1 1.7 20 91-110 32-51 (204)
228 cd04137 RheB Rheb (Ras Homolog 95.5 0.0086 1.9E-07 41.6 1.8 21 89-109 4-24 (180)
229 PRK14722 flhF flagellar biosyn 95.5 0.016 3.5E-07 46.0 3.5 20 91-110 142-161 (374)
230 cd03252 ABCC_Hemolysin The ABC 95.5 0.008 1.7E-07 44.0 1.7 20 91-110 33-52 (237)
231 cd03268 ABC_BcrA_bacitracin_re 95.4 0.0086 1.9E-07 43.0 1.8 20 91-110 31-50 (208)
232 cd03218 ABC_YhbG The ABC trans 95.4 0.0083 1.8E-07 43.8 1.7 20 91-110 31-50 (232)
233 cd03262 ABC_HisP_GlnQ_permease 95.4 0.0085 1.8E-07 43.1 1.7 20 91-110 31-50 (213)
234 PRK15177 Vi polysaccharide exp 95.4 0.0085 1.8E-07 43.6 1.7 20 91-110 18-37 (213)
235 PRK04195 replication factor C 95.4 0.0083 1.8E-07 48.9 1.8 22 89-110 42-63 (482)
236 PRK09183 transposase/IS protei 95.4 0.0082 1.8E-07 45.2 1.7 22 89-110 105-126 (259)
237 PRK11124 artP arginine transpo 95.4 0.0086 1.9E-07 44.1 1.8 20 91-110 33-52 (242)
238 TIGR00150 HI0065_YjeE ATPase, 95.4 0.0095 2.1E-07 40.7 1.8 20 91-110 27-46 (133)
239 PRK08939 primosomal protein Dn 95.4 0.011 2.4E-07 45.6 2.4 35 89-126 159-193 (306)
240 cd04122 Rab14 Rab14 subfamily. 95.4 0.009 2E-07 41.0 1.7 21 89-109 5-25 (166)
241 cd04136 Rap_like Rap-like subf 95.4 0.0094 2E-07 40.4 1.8 19 89-107 4-22 (163)
242 PTZ00361 26 proteosome regulat 95.4 0.0096 2.1E-07 48.2 2.1 20 91-110 222-241 (438)
243 COG1936 Predicted nucleotide k 95.4 0.0089 1.9E-07 42.6 1.6 18 90-107 4-21 (180)
244 PLN02200 adenylate kinase fami 95.4 0.0096 2.1E-07 44.2 1.9 21 90-110 47-67 (234)
245 PRK11248 tauB taurine transpor 95.4 0.0088 1.9E-07 44.7 1.7 20 91-110 32-51 (255)
246 TIGR00455 apsK adenylylsulfate 95.4 0.0097 2.1E-07 42.0 1.8 21 90-110 22-42 (184)
247 cd02032 Bchl_like This family 95.4 0.0086 1.9E-07 44.8 1.6 16 91-106 5-20 (267)
248 cd04154 Arl2 Arl2 subfamily. 95.4 0.0093 2E-07 41.4 1.7 21 89-109 17-37 (173)
249 cd03295 ABC_OpuCA_Osmoprotecti 95.4 0.0094 2E-07 43.9 1.8 20 91-110 32-51 (242)
250 PRK10619 histidine/lysine/argi 95.4 0.0093 2E-07 44.4 1.8 24 87-110 31-55 (257)
251 PRK14737 gmk guanylate kinase; 95.4 0.0098 2.1E-07 42.6 1.8 20 91-110 9-28 (186)
252 COG3638 ABC-type phosphate/pho 95.4 0.0093 2E-07 44.6 1.7 20 91-110 35-54 (258)
253 cd03247 ABCC_cytochrome_bd The 95.3 0.0095 2.1E-07 41.9 1.7 20 91-110 33-52 (178)
254 PRK09493 glnQ glutamine ABC tr 95.3 0.0093 2E-07 43.9 1.7 20 91-110 32-51 (240)
255 PRK10895 lipopolysaccharide AB 95.3 0.0093 2E-07 43.9 1.7 20 91-110 34-53 (241)
256 cd01394 radB RadB. The archaea 95.3 0.019 4.2E-07 41.5 3.4 32 91-125 24-55 (218)
257 cd01866 Rab2 Rab2 subfamily. 95.3 0.0099 2.1E-07 41.0 1.8 21 89-109 7-27 (168)
258 TIGR00972 3a0107s01c2 phosphat 95.3 0.0093 2E-07 44.1 1.7 20 91-110 32-51 (247)
259 cd04110 Rab35 Rab35 subfamily. 95.3 0.0098 2.1E-07 42.5 1.8 20 89-108 9-28 (199)
260 PRK08099 bifunctional DNA-bind 95.3 0.0094 2E-07 47.7 1.8 20 91-110 224-243 (399)
261 PRK10247 putative ABC transpor 95.3 0.0098 2.1E-07 43.4 1.8 20 91-110 38-57 (225)
262 PF13479 AAA_24: AAA domain 95.3 0.0083 1.8E-07 43.7 1.4 17 90-106 7-23 (213)
263 cd03267 ABC_NatA_like Similar 95.3 0.0097 2.1E-07 43.8 1.7 20 91-110 52-71 (236)
264 TIGR00101 ureG urease accessor 95.3 0.01 2.3E-07 42.9 1.8 20 91-110 6-25 (199)
265 cd03215 ABC_Carb_Monos_II This 95.3 0.01 2.2E-07 42.0 1.7 20 91-110 31-50 (182)
266 PRK14242 phosphate transporter 95.3 0.0098 2.1E-07 44.1 1.7 19 91-109 37-55 (253)
267 COG2884 FtsE Predicted ATPase 95.3 0.012 2.6E-07 42.9 2.0 20 91-110 33-52 (223)
268 TIGR03689 pup_AAA proteasome A 95.3 0.017 3.7E-07 47.6 3.3 20 91-110 221-240 (512)
269 TIGR02639 ClpA ATP-dependent C 95.3 0.0043 9.3E-08 53.1 -0.3 32 79-110 184-227 (731)
270 TIGR03598 GTPase_YsxC ribosome 95.3 0.01 2.2E-07 41.6 1.7 21 89-109 21-41 (179)
271 cd03237 ABC_RNaseL_inhibitor_d 95.3 0.01 2.2E-07 44.3 1.7 20 91-110 30-49 (246)
272 PRK11264 putative amino-acid A 95.3 0.01 2.2E-07 43.9 1.7 20 91-110 34-53 (250)
273 PRK14245 phosphate ABC transpo 95.3 0.01 2.2E-07 44.0 1.7 18 91-108 34-51 (250)
274 cd01868 Rab11_like Rab11-like. 95.3 0.011 2.3E-07 40.4 1.8 21 89-109 6-26 (165)
275 PRK00698 tmk thymidylate kinas 95.3 0.011 2.5E-07 42.0 1.9 20 91-110 8-27 (205)
276 PRK00279 adk adenylate kinase; 95.3 0.011 2.4E-07 42.9 1.9 20 89-108 3-22 (215)
277 PRK14247 phosphate ABC transpo 95.3 0.01 2.2E-07 43.9 1.7 20 91-110 34-53 (250)
278 cd04118 Rab24 Rab24 subfamily. 95.3 0.011 2.4E-07 41.7 1.8 20 89-108 3-22 (193)
279 PRK11247 ssuB aliphatic sulfon 95.3 0.01 2.2E-07 44.5 1.7 20 91-110 43-62 (257)
280 cd04107 Rab32_Rab38 Rab38/Rab3 95.2 0.011 2.3E-07 42.2 1.8 19 89-107 3-21 (201)
281 cd03216 ABC_Carb_Monos_I This 95.2 0.011 2.4E-07 41.1 1.8 20 91-110 31-50 (163)
282 COG2019 AdkA Archaeal adenylat 95.2 0.01 2.2E-07 42.3 1.6 19 91-109 9-27 (189)
283 PRK10908 cell division protein 95.2 0.011 2.3E-07 43.0 1.8 20 91-110 33-52 (222)
284 TIGR03410 urea_trans_UrtE urea 95.2 0.011 2.3E-07 43.2 1.7 20 91-110 31-50 (230)
285 PRK11300 livG leucine/isoleuci 95.2 0.01 2.3E-07 43.9 1.7 20 91-110 36-55 (255)
286 PRK13540 cytochrome c biogenes 95.2 0.011 2.4E-07 42.4 1.8 20 91-110 32-51 (200)
287 cd04163 Era Era subfamily. Er 95.2 0.011 2.4E-07 39.6 1.7 19 91-109 8-26 (168)
288 PRK05416 glmZ(sRNA)-inactivati 95.2 0.01 2.2E-07 45.4 1.7 19 89-107 9-27 (288)
289 cd04103 Centaurin_gamma Centau 95.2 0.011 2.4E-07 40.8 1.7 17 90-106 4-20 (158)
290 PRK13231 nitrogenase reductase 95.2 0.011 2.3E-07 44.2 1.7 19 91-109 7-25 (264)
291 cd03246 ABCC_Protease_Secretio 95.2 0.011 2.4E-07 41.4 1.7 20 91-110 33-52 (173)
292 PF00025 Arf: ADP-ribosylation 95.2 0.01 2.2E-07 41.8 1.5 21 89-109 17-37 (175)
293 cd04115 Rab33B_Rab33A Rab33B/R 95.2 0.012 2.5E-07 40.7 1.8 21 89-109 5-25 (170)
294 PRK14241 phosphate transporter 95.2 0.011 2.3E-07 44.0 1.7 20 91-110 35-54 (258)
295 cd03230 ABC_DR_subfamily_A Thi 95.2 0.011 2.5E-07 41.3 1.8 20 91-110 31-50 (173)
296 PTZ00132 GTP-binding nuclear p 95.2 0.011 2.4E-07 42.7 1.7 21 90-110 13-34 (215)
297 PRK13233 nifH nitrogenase redu 95.2 0.01 2.2E-07 44.6 1.6 20 91-110 7-26 (275)
298 smart00178 SAR Sar1p-like memb 95.2 0.012 2.5E-07 41.6 1.8 21 89-109 20-40 (184)
299 cd00877 Ran Ran (Ras-related n 95.2 0.012 2.6E-07 40.7 1.8 19 89-107 3-21 (166)
300 cd04149 Arf6 Arf6 subfamily. 95.2 0.011 2.4E-07 41.1 1.7 19 89-107 12-30 (168)
301 cd01897 NOG NOG1 is a nucleola 95.2 0.011 2.5E-07 40.3 1.7 21 89-109 3-23 (168)
302 TIGR02324 CP_lyasePhnL phospho 95.2 0.011 2.5E-07 42.9 1.8 20 91-110 39-58 (224)
303 cd03232 ABC_PDR_domain2 The pl 95.2 0.012 2.5E-07 42.0 1.8 19 91-109 38-56 (192)
304 PRK04213 GTP-binding protein; 95.2 0.012 2.5E-07 41.9 1.7 21 89-109 12-32 (201)
305 PTZ00133 ADP-ribosylation fact 95.2 0.011 2.4E-07 41.7 1.6 20 89-108 20-39 (182)
306 PF00448 SRP54: SRP54-type pro 95.2 0.01 2.2E-07 42.9 1.5 20 91-110 6-25 (196)
307 cd04135 Tc10 TC10 subfamily. 95.2 0.012 2.6E-07 40.5 1.8 18 89-106 3-20 (174)
308 PRK14248 phosphate ABC transpo 95.2 0.011 2.4E-07 44.3 1.7 18 91-108 52-69 (268)
309 PRK11701 phnK phosphonate C-P 95.2 0.011 2.5E-07 43.9 1.7 20 91-110 37-56 (258)
310 PRK11831 putative ABC transpor 95.2 0.011 2.4E-07 44.4 1.7 20 91-110 38-57 (269)
311 cd01123 Rad51_DMC1_radA Rad51_ 95.2 0.025 5.5E-07 41.2 3.6 35 91-126 24-62 (235)
312 PRK13235 nifH nitrogenase redu 95.2 0.011 2.3E-07 44.5 1.6 17 91-107 6-22 (274)
313 KOG0927 Predicted transporter 95.2 0.13 2.7E-06 42.9 7.8 104 3-116 315-446 (614)
314 cd03253 ABCC_ATM1_transporter 95.2 0.012 2.5E-07 43.1 1.7 20 91-110 32-51 (236)
315 TIGR00554 panK_bact pantothena 95.2 0.011 2.4E-07 45.3 1.7 20 91-110 67-86 (290)
316 PRK13638 cbiO cobalt transport 95.2 0.011 2.5E-07 44.3 1.7 20 91-110 32-51 (271)
317 PRK10744 pstB phosphate transp 95.2 0.011 2.5E-07 44.0 1.7 20 91-110 44-63 (260)
318 cd03240 ABC_Rad50 The catalyti 95.2 0.012 2.6E-07 42.6 1.7 17 91-107 27-43 (204)
319 PRK06851 hypothetical protein; 95.2 0.021 4.5E-07 45.2 3.2 34 91-126 35-68 (367)
320 cd03223 ABCD_peroxisomal_ALDP 95.2 0.012 2.6E-07 41.1 1.7 20 91-110 32-51 (166)
321 TIGR01189 ccmA heme ABC export 95.1 0.012 2.6E-07 42.0 1.8 20 91-110 31-50 (198)
322 cd04125 RabA_like RabA-like su 95.1 0.012 2.6E-07 41.4 1.7 21 89-109 3-23 (188)
323 cd04141 Rit_Rin_Ric Rit/Rin/Ri 95.1 0.012 2.6E-07 41.1 1.7 18 89-106 5-22 (172)
324 PHA02544 44 clamp loader, smal 95.1 0.012 2.6E-07 44.9 1.9 20 91-110 48-67 (316)
325 cd02036 MinD Bacterial cell di 95.1 0.012 2.6E-07 40.8 1.7 16 92-107 6-21 (179)
326 cd01130 VirB11-like_ATPase Typ 95.1 0.013 2.7E-07 41.7 1.8 21 90-110 29-49 (186)
327 cd04106 Rab23_lke Rab23-like s 95.1 0.012 2.7E-07 39.8 1.7 20 89-108 3-22 (162)
328 PRK14239 phosphate transporter 95.1 0.012 2.6E-07 43.6 1.7 18 91-108 36-53 (252)
329 TIGR02314 ABC_MetN D-methionin 95.1 0.012 2.5E-07 46.2 1.8 20 91-110 36-55 (343)
330 TIGR01277 thiQ thiamine ABC tr 95.1 0.012 2.7E-07 42.5 1.8 20 91-110 29-48 (213)
331 PRK09544 znuC high-affinity zi 95.1 0.012 2.6E-07 43.9 1.8 20 91-110 35-54 (251)
332 PRK08356 hypothetical protein; 95.1 0.012 2.6E-07 42.1 1.7 17 91-107 10-26 (195)
333 CHL00131 ycf16 sulfate ABC tra 95.1 0.012 2.6E-07 43.6 1.7 19 91-109 38-56 (252)
334 PF01078 Mg_chelatase: Magnesi 95.1 0.0039 8.4E-08 45.6 -0.9 18 91-108 27-44 (206)
335 PRK14256 phosphate ABC transpo 95.1 0.012 2.7E-07 43.5 1.8 19 91-109 35-53 (252)
336 TIGR03005 ectoine_ehuA ectoine 95.1 0.012 2.6E-07 43.6 1.7 20 91-110 31-50 (252)
337 PLN02796 D-glycerate 3-kinase 95.1 0.012 2.6E-07 46.2 1.8 20 91-110 105-124 (347)
338 PRK13649 cbiO cobalt transport 95.1 0.012 2.6E-07 44.4 1.7 20 91-110 38-57 (280)
339 PRK14260 phosphate ABC transpo 95.1 0.012 2.6E-07 43.9 1.7 20 91-110 38-57 (259)
340 PRK14238 phosphate transporter 95.1 0.012 2.6E-07 44.3 1.7 20 91-110 55-74 (271)
341 PRK13539 cytochrome c biogenes 95.1 0.012 2.7E-07 42.4 1.7 20 91-110 33-52 (207)
342 PRK13645 cbiO cobalt transport 95.1 0.012 2.6E-07 44.7 1.7 20 91-110 42-61 (289)
343 PRK14964 DNA polymerase III su 95.1 0.0046 9.9E-08 50.7 -0.6 18 91-108 40-57 (491)
344 cd03234 ABCG_White The White s 95.1 0.012 2.7E-07 42.8 1.7 20 91-110 38-57 (226)
345 cd03298 ABC_ThiQ_thiamine_tran 95.1 0.012 2.7E-07 42.3 1.7 20 91-110 29-48 (211)
346 PRK14087 dnaA chromosomal repl 95.1 0.024 5.3E-07 46.0 3.6 20 91-110 146-165 (450)
347 TIGR03873 F420-0_ABC_ATP propo 95.1 0.012 2.6E-07 43.7 1.7 20 91-110 32-51 (256)
348 PRK14957 DNA polymerase III su 95.1 0.0049 1.1E-07 51.1 -0.5 20 91-110 43-62 (546)
349 PRK14243 phosphate transporter 95.1 0.012 2.7E-07 44.0 1.7 18 91-108 41-58 (264)
350 PRK14250 phosphate ABC transpo 95.1 0.013 2.7E-07 43.3 1.7 20 91-110 34-53 (241)
351 PRK15056 manganese/iron transp 95.1 0.012 2.6E-07 44.2 1.7 20 91-110 38-57 (272)
352 PRK09580 sufC cysteine desulfu 95.1 0.012 2.6E-07 43.4 1.7 19 91-109 32-50 (248)
353 PRK14274 phosphate ABC transpo 95.1 0.012 2.7E-07 43.8 1.7 19 91-109 43-61 (259)
354 PRK14259 phosphate ABC transpo 95.1 0.012 2.7E-07 44.2 1.7 19 91-109 44-62 (269)
355 cd03294 ABC_Pro_Gly_Bertaine T 95.1 0.013 2.8E-07 44.1 1.8 20 91-110 55-74 (269)
356 PRK10575 iron-hydroxamate tran 95.1 0.012 2.6E-07 44.0 1.7 20 91-110 42-61 (265)
357 cd03214 ABC_Iron-Siderophores_ 95.1 0.013 2.9E-07 41.3 1.8 20 91-110 30-49 (180)
358 cd03228 ABCC_MRP_Like The MRP 95.1 0.013 2.9E-07 40.9 1.8 20 91-110 33-52 (171)
359 cd04117 Rab15 Rab15 subfamily. 95.1 0.013 2.9E-07 40.2 1.7 19 89-107 3-21 (161)
360 TIGR02782 TrbB_P P-type conjug 95.1 0.013 2.8E-07 45.0 1.8 20 91-110 137-156 (299)
361 PRK14955 DNA polymerase III su 95.1 0.0057 1.2E-07 48.7 -0.2 20 91-110 43-62 (397)
362 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.1 0.013 2.9E-07 40.0 1.7 20 91-110 31-50 (144)
363 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.1 0.012 2.7E-07 43.1 1.7 20 91-110 34-53 (238)
364 cd03279 ABC_sbcCD SbcCD and ot 95.1 0.012 2.7E-07 42.6 1.6 18 90-107 32-49 (213)
365 TIGR03345 VI_ClpV1 type VI sec 95.1 0.0056 1.2E-07 53.3 -0.2 32 79-110 189-232 (852)
366 cd04120 Rab12 Rab12 subfamily. 95.1 0.013 2.9E-07 42.4 1.8 18 90-107 4-21 (202)
367 TIGR00064 ftsY signal recognit 95.1 0.024 5.1E-07 43.1 3.2 20 91-110 77-96 (272)
368 COG1763 MobB Molybdopterin-gua 95.1 0.011 2.4E-07 41.6 1.3 20 91-110 7-26 (161)
369 COG0703 AroK Shikimate kinase 95.1 0.013 2.9E-07 41.6 1.7 21 89-109 5-25 (172)
370 cd03233 ABC_PDR_domain1 The pl 95.0 0.013 2.8E-07 42.2 1.7 20 91-110 38-57 (202)
371 PRK14721 flhF flagellar biosyn 95.0 0.03 6.5E-07 45.1 3.9 20 91-110 196-215 (420)
372 cd04127 Rab27A Rab27a subfamil 95.0 0.014 3E-07 40.5 1.8 20 89-108 7-26 (180)
373 TIGR01188 drrA daunorubicin re 95.0 0.013 2.8E-07 44.8 1.8 20 91-110 24-43 (302)
374 PRK14255 phosphate ABC transpo 95.0 0.013 2.8E-07 43.4 1.7 18 91-108 36-53 (252)
375 PRK11231 fecE iron-dicitrate t 95.0 0.013 2.8E-07 43.6 1.7 20 91-110 33-52 (255)
376 PF00158 Sigma54_activat: Sigm 95.0 0.0045 9.7E-08 43.7 -0.7 21 90-110 26-46 (168)
377 cd03290 ABCC_SUR1_N The SUR do 95.0 0.013 2.9E-07 42.4 1.7 20 91-110 32-51 (218)
378 PRK14262 phosphate ABC transpo 95.0 0.013 2.8E-07 43.3 1.7 19 91-109 34-52 (250)
379 cd03251 ABCC_MsbA MsbA is an e 95.0 0.013 2.9E-07 42.8 1.7 20 91-110 33-52 (234)
380 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.0 0.013 2.9E-07 42.8 1.7 20 91-110 53-72 (224)
381 cd03116 MobB Molybdenum is an 95.0 0.015 3.3E-07 40.7 1.9 20 91-110 6-25 (159)
382 PRK15093 antimicrobial peptide 95.0 0.013 2.8E-07 45.5 1.8 20 91-110 38-57 (330)
383 cd03245 ABCC_bacteriocin_expor 95.0 0.014 2.9E-07 42.3 1.7 20 91-110 35-54 (220)
384 cd01892 Miro2 Miro2 subfamily. 95.0 0.014 3E-07 40.6 1.7 20 90-109 8-27 (169)
385 PTZ00454 26S protease regulato 95.0 0.014 3.1E-07 46.6 2.0 20 91-110 184-203 (398)
386 cd01393 recA_like RecA is a b 95.0 0.033 7.2E-07 40.3 3.8 33 91-126 24-62 (226)
387 PRK14267 phosphate ABC transpo 95.0 0.013 2.9E-07 43.3 1.7 20 91-110 35-54 (253)
388 PLN03025 replication factor C 95.0 0.014 3.1E-07 44.9 1.9 22 89-110 37-58 (319)
389 COG0529 CysC Adenylylsulfate k 95.0 0.015 3.2E-07 41.8 1.8 22 89-110 26-47 (197)
390 PRK10771 thiQ thiamine transpo 95.0 0.013 2.9E-07 42.8 1.7 20 91-110 30-49 (232)
391 PF13555 AAA_29: P-loop contai 95.0 0.016 3.5E-07 34.4 1.7 18 90-107 27-44 (62)
392 PRK14273 phosphate ABC transpo 95.0 0.014 3E-07 43.3 1.8 20 91-110 38-57 (254)
393 cd01865 Rab3 Rab3 subfamily. 95.0 0.014 3.1E-07 40.0 1.7 22 89-110 4-25 (165)
394 PHA02518 ParA-like protein; Pr 95.0 0.013 2.7E-07 41.9 1.5 16 93-108 8-23 (211)
395 PTZ00369 Ras-like protein; Pro 95.0 0.014 3.1E-07 41.2 1.7 21 89-109 8-28 (189)
396 cd04129 Rho2 Rho2 subfamily. 95.0 0.014 3E-07 41.2 1.7 20 88-107 3-22 (187)
397 PRK14261 phosphate ABC transpo 95.0 0.014 2.9E-07 43.3 1.7 18 91-108 37-54 (253)
398 PRK10418 nikD nickel transport 95.0 0.014 3E-07 43.4 1.8 20 91-110 34-53 (254)
399 cd04145 M_R_Ras_like M-Ras/R-R 95.0 0.015 3.3E-07 39.4 1.8 20 89-108 5-24 (164)
400 PRK14240 phosphate transporter 95.0 0.014 3E-07 43.2 1.7 19 91-109 34-52 (250)
401 PRK05896 DNA polymerase III su 95.0 0.0059 1.3E-07 51.2 -0.3 20 91-110 43-62 (605)
402 cd01888 eIF2_gamma eIF2-gamma 95.0 0.014 3.1E-07 42.0 1.7 17 91-107 5-21 (203)
403 cd03231 ABC_CcmA_heme_exporter 95.0 0.014 3.1E-07 41.8 1.7 20 91-110 31-50 (201)
404 TIGR02030 BchI-ChlI magnesium 95.0 0.0056 1.2E-07 47.9 -0.4 19 91-109 30-48 (337)
405 cd04153 Arl5_Arl8 Arl5/Arl8 su 95.0 0.014 3.1E-07 40.6 1.7 20 89-108 18-37 (174)
406 PF03193 DUF258: Protein of un 95.0 0.016 3.4E-07 40.9 1.8 20 91-110 40-59 (161)
407 cd03272 ABC_SMC3_euk Eukaryoti 94.9 0.014 3.1E-07 42.8 1.7 17 91-107 28-44 (243)
408 cd04132 Rho4_like Rho4-like su 94.9 0.015 3.3E-07 40.7 1.8 21 89-109 3-23 (187)
409 cd03254 ABCC_Glucan_exporter_l 94.9 0.015 3.2E-07 42.4 1.7 20 91-110 34-53 (229)
410 cd04175 Rap1 Rap1 subgroup. T 94.9 0.016 3.4E-07 39.6 1.8 19 90-108 5-23 (164)
411 cd01867 Rab8_Rab10_Rab13_like 94.9 0.016 3.4E-07 39.9 1.8 21 89-109 6-26 (167)
412 cd03244 ABCC_MRP_domain2 Domai 94.9 0.015 3.2E-07 42.1 1.7 20 91-110 35-54 (221)
413 PRK11889 flhF flagellar biosyn 94.9 0.014 3.1E-07 46.9 1.7 20 91-110 246-265 (436)
414 cd03273 ABC_SMC2_euk Eukaryoti 94.9 0.015 3.3E-07 43.1 1.8 18 91-108 30-47 (251)
415 PRK12402 replication factor C 94.9 0.016 3.4E-07 44.4 1.9 22 89-110 39-60 (337)
416 smart00763 AAA_PrkA PrkA AAA d 94.9 0.017 3.7E-07 45.6 2.1 20 91-110 83-102 (361)
417 PRK15467 ethanolamine utilizat 94.9 0.015 3.3E-07 40.2 1.6 23 88-110 3-25 (158)
418 TIGR00073 hypB hydrogenase acc 94.9 0.032 6.9E-07 40.3 3.4 20 91-110 27-46 (207)
419 COG1119 ModF ABC-type molybden 94.9 0.015 3.3E-07 43.6 1.7 20 91-110 62-81 (257)
420 PRK14235 phosphate transporter 94.9 0.016 3.4E-07 43.5 1.8 20 91-110 50-69 (267)
421 KOG0062 ATPase component of AB 94.9 0.015 3.3E-07 47.8 1.8 19 91-109 111-129 (582)
422 PRK11153 metN DL-methionine tr 94.9 0.015 3.2E-07 45.4 1.7 20 91-110 36-55 (343)
423 PRK13548 hmuV hemin importer A 94.9 0.015 3.3E-07 43.4 1.7 20 91-110 33-52 (258)
424 PRK14270 phosphate ABC transpo 94.9 0.015 3.3E-07 43.0 1.7 19 91-109 35-53 (251)
425 cd01895 EngA2 EngA2 subfamily. 94.9 0.016 3.5E-07 39.3 1.7 20 90-109 6-25 (174)
426 PRK13547 hmuV hemin importer A 94.9 0.015 3.3E-07 43.9 1.7 20 91-110 32-51 (272)
427 PF13086 AAA_11: AAA domain; P 94.9 0.015 3.3E-07 41.5 1.6 20 91-110 22-41 (236)
428 PRK13543 cytochrome c biogenes 94.8 0.016 3.4E-07 42.0 1.7 20 91-110 42-61 (214)
429 PF13604 AAA_30: AAA domain; P 94.8 0.029 6.3E-07 40.4 3.1 20 91-110 23-42 (196)
430 TIGR02769 nickel_nikE nickel i 94.8 0.016 3.5E-07 43.4 1.7 20 91-110 42-61 (265)
431 PRK14265 phosphate ABC transpo 94.8 0.016 3.5E-07 43.7 1.8 19 91-109 51-69 (274)
432 PRK14528 adenylate kinase; Pro 94.8 0.018 3.9E-07 41.1 1.9 21 88-108 3-23 (186)
433 cd04108 Rab36_Rab34 Rab34/Rab3 94.8 0.017 3.6E-07 40.2 1.7 21 89-109 3-23 (170)
434 CHL00081 chlI Mg-protoporyphyr 94.8 0.0057 1.2E-07 48.1 -0.7 20 91-110 43-62 (350)
435 PRK14237 phosphate transporter 94.8 0.017 3.6E-07 43.4 1.8 20 91-110 51-70 (267)
436 PRK14266 phosphate ABC transpo 94.8 0.017 3.6E-07 42.8 1.8 19 91-109 34-52 (250)
437 cd01131 PilT Pilus retraction 94.8 0.017 3.8E-07 41.5 1.8 20 91-110 6-25 (198)
438 TIGR00041 DTMP_kinase thymidyl 94.8 0.018 3.9E-07 40.8 1.9 20 91-110 8-27 (195)
439 COG1121 ZnuC ABC-type Mn/Zn tr 94.8 0.016 3.5E-07 43.7 1.7 20 91-110 35-54 (254)
440 cd01858 NGP_1 NGP-1. Autoanti 94.8 0.016 3.4E-07 39.9 1.5 20 91-110 107-126 (157)
441 PRK13546 teichoic acids export 94.8 0.016 3.5E-07 43.6 1.7 20 91-110 55-74 (264)
442 cd03369 ABCC_NFT1 Domain 2 of 94.8 0.017 3.6E-07 41.5 1.7 20 91-110 39-58 (207)
443 cd03248 ABCC_TAP TAP, the Tran 94.8 0.017 3.7E-07 42.0 1.8 20 91-110 45-64 (226)
444 PF01695 IstB_IS21: IstB-like 94.8 0.017 3.6E-07 41.1 1.7 35 89-126 50-84 (178)
445 cd01870 RhoA_like RhoA-like su 94.8 0.017 3.8E-07 39.7 1.7 22 88-109 3-24 (175)
446 PRK13632 cbiO cobalt transport 94.8 0.017 3.6E-07 43.5 1.7 20 91-110 40-59 (271)
447 TIGR02323 CP_lyasePhnK phospho 94.8 0.017 3.6E-07 42.8 1.7 20 91-110 34-53 (253)
448 TIGR03411 urea_trans_UrtD urea 94.8 0.017 3.7E-07 42.4 1.8 20 91-110 33-52 (242)
449 PRK13650 cbiO cobalt transport 94.8 0.017 3.6E-07 43.7 1.8 20 91-110 38-57 (279)
450 PRK09984 phosphonate/organopho 94.8 0.016 3.5E-07 43.2 1.7 20 91-110 35-54 (262)
451 PRK10253 iron-enterobactin tra 94.8 0.016 3.5E-07 43.4 1.7 20 91-110 38-57 (265)
452 PRK14244 phosphate ABC transpo 94.8 0.017 3.8E-07 42.7 1.8 19 91-109 36-54 (251)
453 PRK14251 phosphate ABC transpo 94.8 0.017 3.7E-07 42.7 1.7 20 91-110 35-54 (251)
454 PRK13185 chlL protochlorophyll 94.8 0.017 3.6E-07 43.3 1.7 20 91-110 7-26 (270)
455 TIGR01241 FtsH_fam ATP-depende 94.8 0.019 4.1E-07 46.9 2.1 21 90-110 92-112 (495)
456 PRK08154 anaerobic benzoate ca 94.8 0.018 3.8E-07 44.4 1.8 20 91-110 138-157 (309)
457 PRK11614 livF leucine/isoleuci 94.7 0.017 3.7E-07 42.3 1.7 20 91-110 36-55 (237)
458 PRK14974 cell division protein 94.7 0.025 5.5E-07 44.3 2.7 20 91-110 145-164 (336)
459 PRK14271 phosphate ABC transpo 94.7 0.017 3.7E-07 43.6 1.7 20 91-110 52-71 (276)
460 PRK11000 maltose/maltodextrin 94.7 0.017 3.6E-07 45.7 1.7 20 91-110 34-53 (369)
461 PRK12727 flagellar biosynthesi 94.7 0.032 6.9E-07 46.3 3.3 20 91-110 355-374 (559)
462 COG4608 AppF ABC-type oligopep 94.7 0.016 3.4E-07 44.0 1.5 20 91-110 44-63 (268)
463 TIGR01420 pilT_fam pilus retra 94.7 0.033 7.1E-07 43.5 3.3 20 91-110 127-146 (343)
464 TIGR02868 CydC thiol reductant 94.7 0.017 3.6E-07 47.3 1.7 20 91-110 366-385 (529)
465 cd04134 Rho3 Rho3 subfamily. 94.7 0.018 4E-07 40.7 1.7 19 89-107 3-21 (189)
466 PRK13648 cbiO cobalt transport 94.7 0.018 3.9E-07 43.2 1.8 20 91-110 40-59 (269)
467 cd03236 ABC_RNaseL_inhibitor_d 94.7 0.018 3.9E-07 43.1 1.8 20 91-110 31-50 (255)
468 PRK05703 flhF flagellar biosyn 94.7 0.017 3.6E-07 46.6 1.7 21 90-110 225-245 (424)
469 PRK11034 clpA ATP-dependent Cl 94.7 0.014 2.9E-07 50.3 1.2 20 91-110 212-231 (758)
470 TIGR03771 anch_rpt_ABC anchore 94.7 0.018 3.9E-07 42.0 1.7 20 91-110 11-30 (223)
471 cd00267 ABC_ATPase ABC (ATP-bi 94.7 0.019 4.1E-07 39.4 1.7 20 91-110 30-49 (157)
472 PRK11144 modC molybdate transp 94.7 0.017 3.7E-07 45.2 1.7 20 91-110 29-48 (352)
473 PRK13236 nitrogenase reductase 94.7 0.017 3.7E-07 44.1 1.7 20 91-110 11-30 (296)
474 PRK11022 dppD dipeptide transp 94.7 0.017 3.6E-07 44.9 1.6 24 87-110 33-57 (326)
475 PRK10865 protein disaggregatio 94.7 0.0078 1.7E-07 52.4 -0.3 32 79-110 180-223 (857)
476 TIGR03740 galliderm_ABC gallid 94.7 0.018 4E-07 41.8 1.7 20 91-110 31-50 (223)
477 PF08433 KTI12: Chromatin asso 94.7 0.018 4E-07 43.7 1.7 21 90-110 5-25 (270)
478 PRK14269 phosphate ABC transpo 94.7 0.019 4.1E-07 42.5 1.8 19 91-109 33-51 (246)
479 COG0410 LivF ABC-type branched 94.7 0.019 4E-07 42.7 1.7 24 87-110 29-53 (237)
480 PRK10416 signal recognition pa 94.7 0.018 3.9E-07 44.7 1.7 21 90-110 118-138 (318)
481 PRK14021 bifunctional shikimat 94.7 0.022 4.8E-07 47.2 2.3 25 86-110 6-30 (542)
482 COG1123 ATPase components of v 94.7 0.018 3.8E-07 47.7 1.7 20 91-110 322-341 (539)
483 cd03110 Fer4_NifH_child This p 94.7 0.019 4.1E-07 40.2 1.7 15 92-106 6-20 (179)
484 cd03274 ABC_SMC4_euk Eukaryoti 94.7 0.019 4E-07 41.9 1.7 17 91-107 30-46 (212)
485 PRK03695 vitamin B12-transport 94.7 0.019 4E-07 42.7 1.7 19 91-109 27-45 (248)
486 TIGR02142 modC_ABC molybdenum 94.7 0.018 3.9E-07 45.1 1.7 20 91-110 28-47 (354)
487 cd03213 ABCG_EPDR ABCG transpo 94.6 0.019 4.2E-07 41.0 1.7 19 91-109 40-58 (194)
488 PRK14275 phosphate ABC transpo 94.6 0.019 4.1E-07 43.6 1.7 19 91-109 70-88 (286)
489 PRK04220 2-phosphoglycerate ki 94.6 0.02 4.4E-07 44.2 1.9 20 91-110 97-116 (301)
490 TIGR01288 nodI ATP-binding ABC 94.6 0.019 4.1E-07 43.9 1.7 20 91-110 35-54 (303)
491 smart00072 GuKc Guanylate kina 94.6 0.021 4.5E-07 40.5 1.8 20 91-110 7-26 (184)
492 cd04116 Rab9 Rab9 subfamily. 94.6 0.02 4.4E-07 39.3 1.7 20 89-108 8-27 (170)
493 PRK05564 DNA polymerase III su 94.6 0.013 2.9E-07 44.9 0.9 34 91-124 31-67 (313)
494 cd03112 CobW_like The function 94.6 0.019 4.1E-07 39.9 1.6 19 91-109 5-23 (158)
495 PRK14526 adenylate kinase; Pro 94.6 0.021 4.6E-07 41.7 1.9 20 89-108 3-22 (211)
496 COG2274 SunT ABC-type bacterio 94.6 0.018 3.9E-07 49.2 1.7 19 91-109 504-522 (709)
497 PF13476 AAA_23: AAA domain; P 94.6 0.019 4E-07 40.3 1.5 18 91-108 24-41 (202)
498 PRK14272 phosphate ABC transpo 94.6 0.02 4.3E-07 42.4 1.7 20 91-110 35-54 (252)
499 PRK13639 cbiO cobalt transport 94.6 0.02 4.2E-07 43.2 1.7 20 91-110 33-52 (275)
500 PRK15112 antimicrobial peptide 94.6 0.019 4.2E-07 43.0 1.7 20 91-110 44-63 (267)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.86 E-value=3.6e-22 Score=169.88 Aligned_cols=105 Identities=26% Similarity=0.434 Sum_probs=84.6
Q ss_pred cCccCCchhhhHHHHHHHHHHHHHHHHHhccCcccccc-cCCcccccccCCCCce-eecccCCCCcc------------c
Q 042811 26 GYYFMNCKSSYEFGKKLAKKLQVLANLKEEENYEDVAD-RLSEDSVDDRPVETTK-LGDVRRNGNNW------------P 91 (130)
Q Consensus 26 ~~~~~~~~~~~~i~k~i~~~~~~i~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~i-vG~~~~~~~l~------------I 91 (130)
++|..+....|.+++++.+.+++++.+..++.|+.+.. ..|.+..+++|..+.. ||.+.++++++ |
T Consensus 105 ~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~VG~e~~~~kl~~~L~~d~~~iv~i 184 (889)
T KOG4658|consen 105 GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESDVGLETMLEKLWNRLMEDDVGIVGI 184 (889)
T ss_pred hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCccccccHHHHHHHHHHHhccCCCCEEEE
Confidence 34445667778899999999999999988887876654 3344445566655544 99998887776 9
Q ss_pred cCcCCCchhHHHHhhhhhhhhccCCCCeEEEEEeC-CCCC
Q 042811 92 FGVEGVGKITSLSKSYPEFLEDEGIFLIKMHDVVR-DMSL 130 (130)
Q Consensus 92 ~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~wv~VS-~~~~ 130 (130)
+||||+||||||+.|||++.++.++||.+|||+|| +|+.
T Consensus 185 ~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~ 224 (889)
T KOG4658|consen 185 YGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTT 224 (889)
T ss_pred ECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccH
Confidence 99999999999999999994489999999999999 9973
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.14 E-value=3.3e-11 Score=90.48 Aligned_cols=38 Identities=18% Similarity=0.168 Sum_probs=34.2
Q ss_pred ccCcCCCchhHHHHhhhhhhhhccCCCCeEEEEEeC-CCC
Q 042811 91 PFGVEGVGKITSLSKSYPEFLEDEGIFLIKMHDVVR-DMS 129 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~wv~VS-~~~ 129 (130)
|+||||+||||||+.++++. ....+|+.++|+.++ .++
T Consensus 24 I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~ 62 (287)
T PF00931_consen 24 IVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPS 62 (287)
T ss_dssp EEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SC
T ss_pred EEcCCcCCcceeeeeccccc-ccccccccccccccccccc
Confidence 99999999999999999986 578999999999999 665
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.06 E-value=2.5e-10 Score=100.46 Aligned_cols=95 Identities=16% Similarity=0.091 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhccCccCCchhhhHHHHHHHHHHHHHHHHHhccCcccccccCCcccccccCCCCceeecc
Q 042811 4 LHKIQMGLTRVQALETEVDNLGGYYFMNCKSSYEFGKKLAKKLQVLANLKEEENYEDVADRLSEDSVDDRPVETTKLGDV 83 (130)
Q Consensus 4 ~~~v~~Wl~~v~~~~~e~edi~~~~~~~~~~~~~i~k~i~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~ 83 (130)
.+.++.|-+ |..+|.++.|+...+.. ++ ++-|+++.++|-+... . .++.. .+.+||++
T Consensus 133 ~~~~~~w~~----al~~~~~~~g~~~~~~~--~E-~~~i~~Iv~~v~~~l~---~------~~~~~------~~~~vG~~ 190 (1153)
T PLN03210 133 EDEKIQWKQ----ALTDVANILGYHSQNWP--NE-AKMIEEIANDVLGKLN---L------TPSND------FEDFVGIE 190 (1153)
T ss_pred hhHHHHHHH----HHHHHhCcCceecCCCC--CH-HHHHHHHHHHHHHhhc---c------ccCcc------cccccchH
Confidence 356788877 77788889887764422 22 3334444444433211 1 11110 12247776
Q ss_pred cCCCCcc--------------ccCcCCCchhHHHHhhhhhhhhccCCCCeEEEE
Q 042811 84 RRNGNNW--------------PFGVEGVGKITSLSKSYPEFLEDEGIFLIKMHD 123 (130)
Q Consensus 84 ~~~~~l~--------------I~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~wv 123 (130)
..++++. ||||||+||||||+.+|+.. ..+|+..+|+
T Consensus 191 ~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv 241 (1153)
T PLN03210 191 DHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFI 241 (1153)
T ss_pred HHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEe
Confidence 5433321 99999999999999999976 5789988776
No 4
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.60 E-value=3.6e-08 Score=78.01 Aligned_cols=36 Identities=8% Similarity=-0.014 Sum_probs=32.8
Q ss_pred ccCcCCCchhHHHHhhhhhhhhccCCCCeEEEEEeC-CC
Q 042811 91 PFGVEGVGKITSLSKSYPEFLEDEGIFLIKMHDVVR-DM 128 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~wv~VS-~~ 128 (130)
|+|.+|+||||||+.|||.. .. ++||+++||+++ ++
T Consensus 174 IvgppGvGKTTLaK~Ian~I-~~-nhFDv~~~VvLIgER 210 (416)
T PRK09376 174 IVAPPKAGKTVLLQNIANSI-TT-NHPEVHLIVLLIDER 210 (416)
T ss_pred EeCCCCCChhHHHHHHHHHH-Hh-hcCCeEEEEEEeCCc
Confidence 99999999999999999988 43 499999999998 75
No 5
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.56 E-value=5.5e-08 Score=72.85 Aligned_cols=36 Identities=11% Similarity=-0.010 Sum_probs=32.3
Q ss_pred cccCcCCCchhHHHHhhhhhhhhccCCCCeEEEEEeC-C
Q 042811 90 WPFGVEGVGKITSLSKSYPEFLEDEGIFLIKMHDVVR-D 127 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~wv~VS-~ 127 (130)
.|.|.+|+|||||++.++|.. .. ++|+.++|++++ +
T Consensus 20 ~I~G~~G~GKTTLlr~I~n~l-~~-~~fdv~~~v~vI~e 56 (249)
T cd01128 20 LIVAPPKAGKTTLLQSIANAI-TK-NHPEVYLIVLLIDE 56 (249)
T ss_pred EEECCCCCCHHHHHHHHHhcc-cc-ccCCeEEEEEEccC
Confidence 399999999999999999987 43 499999999988 6
No 6
>PRK08118 topology modulation protein; Reviewed
Probab=98.19 E-value=6e-07 Score=63.29 Aligned_cols=38 Identities=16% Similarity=0.013 Sum_probs=30.1
Q ss_pred CccccCcCCCchhHHHHhhhhhhhhcc-CCCCeEE----EEEeC
Q 042811 88 NNWPFGVEGVGKITSLSKSYPEFLEDE-GIFLIKM----HDVVR 126 (130)
Q Consensus 88 ~l~I~GmGGvGKTTLak~v~~~~~~~~-~~Fd~~~----wv~VS 126 (130)
++.|+|.+|+||||||+.+++.. ... -+||..+ |..++
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l-~~~~~~lD~l~~~~~w~~~~ 45 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL-NIPVHHLDALFWKPNWEGVP 45 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCCceecchhhcccCCcCCC
Confidence 45689999999999999999987 433 5688777 55555
No 7
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.90 E-value=1.2e-05 Score=64.06 Aligned_cols=35 Identities=11% Similarity=0.039 Sum_probs=31.9
Q ss_pred ccCcCCCchhHHHHhhhhhhhhccCCCCeEEEEEeC-C
Q 042811 91 PFGVEGVGKITSLSKSYPEFLEDEGIFLIKMHDVVR-D 127 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~wv~VS-~ 127 (130)
|+|.+|+|||||++.+++.. . .++|+.++||+++ +
T Consensus 173 IvG~~g~GKTtL~~~i~~~I-~-~nhfdv~v~VlLIgE 208 (415)
T TIGR00767 173 IVAPPKAGKTVLLQKIAQAI-T-RNHPEVELIVLLIDE 208 (415)
T ss_pred EECCCCCChhHHHHHHHHhh-c-ccCCceEEEEEEcCC
Confidence 99999999999999999987 4 3589999999998 6
No 8
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.84 E-value=1.6e-05 Score=64.13 Aligned_cols=38 Identities=18% Similarity=-0.032 Sum_probs=33.4
Q ss_pred ccCcCCCchhHHHHhhhhhhhhccCCCCeEEEEEeC-CCC
Q 042811 91 PFGVEGVGKITSLSKSYPEFLEDEGIFLIKMHDVVR-DMS 129 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~wv~VS-~~~ 129 (130)
++|++|+||||||+.+.+.. .....|+.+.||+++ +++
T Consensus 199 l~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsyS 237 (459)
T PRK11331 199 LQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYS 237 (459)
T ss_pred EECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeeccccc
Confidence 99999999999999999987 445688999999998 764
No 9
>PRK07261 topology modulation protein; Provisional
Probab=97.65 E-value=3.1e-05 Score=54.69 Aligned_cols=34 Identities=18% Similarity=-0.061 Sum_probs=23.3
Q ss_pred ccccCcCCCchhHHHHhhhhhhhhccCCCCeEEE
Q 042811 89 NWPFGVEGVGKITSLSKSYPEFLEDEGIFLIKMH 122 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~w 122 (130)
+.|+|++|+||||||+.+.....-..-+.|...|
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 4489999999999999987654101124555555
No 10
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.50 E-value=5.1e-05 Score=49.85 Aligned_cols=20 Identities=25% Similarity=0.179 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|+.|+||||+|+.+-+..
T Consensus 4 I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 4 ISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 78999999999999998763
No 11
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.47 E-value=2.7e-05 Score=61.77 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=21.2
Q ss_pred ccCcCCCchhHHHHhhhhhhhhccCCCC
Q 042811 91 PFGVEGVGKITSLSKSYPEFLEDEGIFL 118 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~~~~~~~Fd 118 (130)
.||..|+||||||+.|-... ...|.
T Consensus 53 l~GPPG~GKTTlA~liA~~~---~~~f~ 77 (436)
T COG2256 53 LWGPPGTGKTTLARLIAGTT---NAAFE 77 (436)
T ss_pred EECCCCCCHHHHHHHHHHhh---CCceE
Confidence 99999999999999998865 34554
No 12
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.41 E-value=3.1e-05 Score=54.09 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=17.6
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|+|..|+|||||++.+....
T Consensus 28 ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 28 LLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp EE-B-TTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 399999999999999999987
No 13
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.40 E-value=5.2e-05 Score=59.56 Aligned_cols=20 Identities=35% Similarity=0.682 Sum_probs=19.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+||||+++.+.++.
T Consensus 60 I~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 60 IYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999987
No 14
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.30 E-value=8.7e-05 Score=57.67 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=19.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+||||+++.+++..
T Consensus 45 I~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 45 IYGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999876
No 15
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.23 E-value=0.00011 Score=58.14 Aligned_cols=20 Identities=25% Similarity=0.199 Sum_probs=19.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
+||..|+||||||+.|-+..
T Consensus 167 lWGppG~GKTtlArlia~ts 186 (554)
T KOG2028|consen 167 LWGPPGTGKTTLARLIASTS 186 (554)
T ss_pred EecCCCCchHHHHHHHHhhc
Confidence 99999999999999999876
No 16
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.23 E-value=0.00014 Score=53.94 Aligned_cols=21 Identities=29% Similarity=0.320 Sum_probs=19.5
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
..||..|+||||||..|-+..
T Consensus 54 lf~GPPG~GKTTLA~IIA~e~ 74 (233)
T PF05496_consen 54 LFYGPPGLGKTTLARIIANEL 74 (233)
T ss_dssp EEESSTTSSHHHHHHHHHHHC
T ss_pred EEECCCccchhHHHHHHHhcc
Confidence 399999999999999999976
No 17
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.19 E-value=0.00038 Score=45.78 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=19.5
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|+|..|+|||||++.+.+..
T Consensus 23 ~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 23 LLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 399999999999999999976
No 18
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.18 E-value=0.00025 Score=51.41 Aligned_cols=34 Identities=18% Similarity=0.105 Sum_probs=24.9
Q ss_pred cccCcCCCchhHHHHhhhhhhhhccCCCCeEEEEEeC
Q 042811 90 WPFGVEGVGKITSLSKSYPEFLEDEGIFLIKMHDVVR 126 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~wv~VS 126 (130)
.|+|..|+||||||+.+.+.. . ......+++..+
T Consensus 42 ll~G~~G~GKT~la~~~~~~~-~--~~~~~~~~i~~~ 75 (226)
T TIGR03420 42 YLWGESGSGKSHLLQAACAAA-E--ERGKSAIYLPLA 75 (226)
T ss_pred EEECCCCCCHHHHHHHHHHHH-H--hcCCcEEEEeHH
Confidence 399999999999999999976 2 233344555443
No 19
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.10 E-value=0.00026 Score=52.67 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=20.0
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|+|..|+|||||++.+++..
T Consensus 46 ~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 46 ILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred EEEEcCCCCCHHHHHHHHHHhc
Confidence 3499999999999999999976
No 20
>PRK06893 DNA replication initiation factor; Validated
Probab=97.09 E-value=0.00032 Score=51.66 Aligned_cols=33 Identities=15% Similarity=0.051 Sum_probs=24.9
Q ss_pred ccCcCCCchhHHHHhhhhhhhhccCCCCeEEEEEeC
Q 042811 91 PFGVEGVGKITSLSKSYPEFLEDEGIFLIKMHDVVR 126 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~wv~VS 126 (130)
|||..|+|||+|++.+.+...+ ....+.+++++
T Consensus 44 l~G~~G~GKThL~~ai~~~~~~---~~~~~~y~~~~ 76 (229)
T PRK06893 44 IWGGKSSGKSHLLKAVSNHYLL---NQRTAIYIPLS 76 (229)
T ss_pred EECCCCCCHHHHHHHHHHHHHH---cCCCeEEeeHH
Confidence 9999999999999999998732 22345666553
No 21
>PRK03839 putative kinase; Provisional
Probab=97.07 E-value=0.00031 Score=49.55 Aligned_cols=21 Identities=29% Similarity=0.128 Sum_probs=18.0
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|.||.|+||||+++.+.+.
T Consensus 3 I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999998664
No 22
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.06 E-value=0.00049 Score=48.35 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=19.4
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
++.|+.|+||||+++.+++..
T Consensus 11 ~i~G~~GsGKst~a~~l~~~l 31 (176)
T PRK05541 11 WITGLAGSGKTTIAKALYERL 31 (176)
T ss_pred EEEcCCCCCHHHHHHHHHHHH
Confidence 389999999999999999977
No 23
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.03 E-value=0.00037 Score=58.44 Aligned_cols=35 Identities=23% Similarity=0.107 Sum_probs=25.1
Q ss_pred ccCcCCCchhHHHHhhhhhhhhccCCCC---eEEEEEeC
Q 042811 91 PFGVEGVGKITSLSKSYPEFLEDEGIFL---IKMHDVVR 126 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~~~~~~~Fd---~~~wv~VS 126 (130)
|+|..|+||||||+.+++.. .....+. ..-|+.+.
T Consensus 180 L~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 180 LYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred EECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEe
Confidence 99999999999999999876 3333332 23455554
No 24
>PF05729 NACHT: NACHT domain
Probab=97.02 E-value=0.00076 Score=45.98 Aligned_cols=37 Identities=32% Similarity=0.416 Sum_probs=26.4
Q ss_pred cccCcCCCchhHHHHhhhhhhhhcc---CCCCeEEEEEeC
Q 042811 90 WPFGVEGVGKITSLSKSYPEFLEDE---GIFLIKMHDVVR 126 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~~~~~---~~Fd~~~wv~VS 126 (130)
+|.|.+|+|||||++.+........ ..|...+|.+.+
T Consensus 4 ~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (166)
T PF05729_consen 4 WISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLR 43 (166)
T ss_pred EEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeeh
Confidence 4899999999999999988773211 014566666655
No 25
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.01 E-value=9.8e-05 Score=53.04 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=18.7
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||+|++.+.+..
T Consensus 25 l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 25 LYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp EEESTTSSHHHHHHHHHHHC
T ss_pred EEcCCcCCHHHHHHHHHHHh
Confidence 99999999999999998865
No 26
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.99 E-value=0.00072 Score=47.79 Aligned_cols=29 Identities=24% Similarity=0.226 Sum_probs=23.0
Q ss_pred ccCcCCCchhHHHHhhhhhhhhccCCCCeEE
Q 042811 91 PFGVEGVGKITSLSKSYPEFLEDEGIFLIKM 121 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~ 121 (130)
|-||.|+|||||++++-+.. +. +.|..-=
T Consensus 10 ITG~PGvGKtTl~~ki~e~L-~~-~g~kvgG 38 (179)
T COG1618 10 ITGRPGVGKTTLVLKIAEKL-RE-KGYKVGG 38 (179)
T ss_pred EeCCCCccHHHHHHHHHHHH-Hh-cCceeee
Confidence 89999999999999999887 42 3465433
No 27
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.95 E-value=0.00046 Score=52.84 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=22.1
Q ss_pred cCCCCccccCcCCCchhHHHHhhhhhh
Q 042811 84 RRNGNNWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 84 ~~~~~l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.++.+.++|..|+||||||..|-|..
T Consensus 50 e~lDHvLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 50 EALDHVLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred CCcCeEEeeCCCCCcHHHHHHHHHHHh
Confidence 344444599999999999999999865
No 28
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.94 E-value=0.00044 Score=48.43 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.8
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+||.|..|+||||||+.+....
T Consensus 5 IwltGlsGsGKtTlA~~L~~~L 26 (156)
T PF01583_consen 5 IWLTGLSGSGKTTLARALERRL 26 (156)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999876
No 29
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.94 E-value=0.00015 Score=55.08 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=19.7
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.++|..|+||||||+.+.+..
T Consensus 33 ~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 33 LLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3499999999999999998865
No 30
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.94 E-value=0.00051 Score=44.77 Aligned_cols=22 Identities=32% Similarity=0.652 Sum_probs=19.2
Q ss_pred cccCcCCCchhHHHHhhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEFL 111 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~~ 111 (130)
+|+|..|+|||+||+.+-.+..
T Consensus 2 ~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 2 WIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 3899999999999999887763
No 31
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.92 E-value=0.00049 Score=44.72 Aligned_cols=21 Identities=29% Similarity=0.238 Sum_probs=19.0
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|+|..|+|||||++.+.+..
T Consensus 6 ~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 6 LIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred EEECCCCCcHHHHHHHHHhcc
Confidence 489999999999999998876
No 32
>PRK06762 hypothetical protein; Provisional
Probab=96.91 E-value=0.00053 Score=47.60 Aligned_cols=21 Identities=24% Similarity=0.177 Sum_probs=18.0
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
+|.|+.|+||||+|+.+.+..
T Consensus 6 ~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 6 IIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 389999999999999887653
No 33
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.91 E-value=0.00046 Score=47.68 Aligned_cols=26 Identities=23% Similarity=0.139 Sum_probs=21.8
Q ss_pred CCccccCcCCCchhHHHHhhhhhhhh
Q 042811 87 GNNWPFGVEGVGKITSLSKSYPEFLE 112 (130)
Q Consensus 87 ~~l~I~GmGGvGKTTLak~v~~~~~~ 112 (130)
.+++++|-.|+|||||++.+......
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~ 27 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR 27 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC
Confidence 45668999999999999999877643
No 34
>PRK06217 hypothetical protein; Validated
Probab=96.90 E-value=0.00052 Score=48.69 Aligned_cols=23 Identities=17% Similarity=0.072 Sum_probs=19.6
Q ss_pred CccccCcCCCchhHHHHhhhhhh
Q 042811 88 NNWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 88 ~l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+|.|.|+.|+|||||++.+....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999987764
No 35
>PRK00625 shikimate kinase; Provisional
Probab=96.90 E-value=0.00055 Score=48.61 Aligned_cols=21 Identities=19% Similarity=0.039 Sum_probs=17.6
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+||.|+||||+++.+-+.
T Consensus 3 I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 447999999999999988553
No 36
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.90 E-value=0.001 Score=49.66 Aligned_cols=32 Identities=19% Similarity=0.060 Sum_probs=26.9
Q ss_pred ccCcCCCchhHHHHhhhhhhhhccCCCCeEEEEEe
Q 042811 91 PFGVEGVGKITSLSKSYPEFLEDEGIFLIKMHDVV 125 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~wv~V 125 (130)
|+|..|+|||||++.+.... .+.|+.+.+++-
T Consensus 18 iIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 18 IIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred EECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 99999999999999998866 578987766643
No 37
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.87 E-value=0.00058 Score=49.29 Aligned_cols=20 Identities=40% Similarity=0.453 Sum_probs=18.6
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.+....
T Consensus 11 I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 11 IAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 89999999999999998865
No 38
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.87 E-value=0.00022 Score=56.90 Aligned_cols=20 Identities=25% Similarity=0.177 Sum_probs=18.8
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
++|..|+||||||+.+.+..
T Consensus 41 L~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 41 LWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 99999999999999998865
No 39
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.86 E-value=0.00057 Score=49.42 Aligned_cols=20 Identities=35% Similarity=0.385 Sum_probs=18.5
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.+....
T Consensus 11 I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 11 IGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 89999999999999998765
No 40
>PRK08233 hypothetical protein; Provisional
Probab=96.85 E-value=0.00061 Score=47.63 Aligned_cols=20 Identities=25% Similarity=0.199 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|-|..|+||||||+.+....
T Consensus 8 I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 8 IAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred EECCCCCCHHHHHHHHHhhC
Confidence 78999999999999998765
No 41
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.85 E-value=0.00063 Score=47.06 Aligned_cols=22 Identities=23% Similarity=0.066 Sum_probs=19.1
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
++|+|+.|+||||+|+.+....
T Consensus 7 i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 7 IVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 3489999999999999987764
No 42
>PF13173 AAA_14: AAA domain
Probab=96.80 E-value=0.00075 Score=45.13 Aligned_cols=20 Identities=35% Similarity=0.429 Sum_probs=18.5
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|.-|+|||||++.+..+.
T Consensus 7 l~G~R~vGKTtll~~~~~~~ 26 (128)
T PF13173_consen 7 LTGPRGVGKTTLLKQLAKDL 26 (128)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 89999999999999998765
No 43
>PTZ00301 uridine kinase; Provisional
Probab=96.79 E-value=0.0012 Score=48.36 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|-|-+|+||||||+.|.+..
T Consensus 8 IaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 8 ISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EECCCcCCHHHHHHHHHHHH
Confidence 88999999999999988765
No 44
>PRK13947 shikimate kinase; Provisional
Probab=96.77 E-value=0.00078 Score=46.88 Aligned_cols=21 Identities=24% Similarity=0.169 Sum_probs=18.4
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+||.|+||||+++.+-+.
T Consensus 4 I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999998665
No 45
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=96.71 E-value=0.00079 Score=48.38 Aligned_cols=22 Identities=32% Similarity=0.288 Sum_probs=19.1
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|+|.+|+|||||+..+..+.
T Consensus 8 ivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 8 IVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEcCCCccHHHHHHHHhcCc
Confidence 3499999999999999987765
No 46
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.68 E-value=0.001 Score=43.23 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=18.3
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|+|-.|+|||||++.+.+..
T Consensus 3 ~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 3 VVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEECSTTSSHHHHHHHHHHSS
T ss_pred EEECcCCCCHHHHHHHHhcCC
Confidence 378999999999999987655
No 47
>PRK13949 shikimate kinase; Provisional
Probab=96.65 E-value=0.0011 Score=46.81 Aligned_cols=22 Identities=27% Similarity=0.190 Sum_probs=18.5
Q ss_pred CccccCcCCCchhHHHHhhhhh
Q 042811 88 NNWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 88 ~l~I~GmGGvGKTTLak~v~~~ 109 (130)
.+.|+||.|+|||||++.+.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4558999999999999987654
No 48
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.65 E-value=0.001 Score=47.32 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.3
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|+|+.|+|||||++.+....
T Consensus 6 ~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 6 WLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEECCCCCCHHHHHHHHhccC
Confidence 389999999999999997653
No 49
>PRK06620 hypothetical protein; Validated
Probab=96.63 E-value=0.0011 Score=48.57 Aligned_cols=22 Identities=14% Similarity=-0.221 Sum_probs=18.7
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|||..|+|||||++.+.+..
T Consensus 47 l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 47 LLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 3499999999999999876654
No 50
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.62 E-value=0.0011 Score=46.49 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=16.9
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|.|+.|+|||||++.+...
T Consensus 6 i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 6 VVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 8999999999999997554
No 51
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.60 E-value=0.0016 Score=48.17 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=19.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|||..|+|||+|++.+.+..
T Consensus 50 l~Gp~G~GKThLl~a~~~~~ 69 (235)
T PRK08084 50 LWSREGAGRSHLLHAACAEL 69 (235)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999876
No 52
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.56 E-value=0.0019 Score=48.33 Aligned_cols=21 Identities=29% Similarity=0.102 Sum_probs=18.7
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.++|..|+||||||+.+.+..
T Consensus 46 ll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 46 IFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred EEEcCCCCCHHHHHHHHHHHH
Confidence 489999999999999998764
No 53
>PRK04040 adenylate kinase; Provisional
Probab=96.54 E-value=0.0013 Score=47.19 Aligned_cols=20 Identities=45% Similarity=0.635 Sum_probs=17.8
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|+.|+||||+++.+....
T Consensus 7 v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 7 VTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred EEeCCCCCHHHHHHHHHHHh
Confidence 89999999999999986654
No 54
>PRK06547 hypothetical protein; Provisional
Probab=96.50 E-value=0.0015 Score=46.29 Aligned_cols=20 Identities=25% Similarity=0.101 Sum_probs=17.8
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.+.+..
T Consensus 20 i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 20 IDGRSGSGKTTLAGALAART 39 (172)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 88999999999999997753
No 55
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.49 E-value=0.0014 Score=43.29 Aligned_cols=36 Identities=14% Similarity=-0.019 Sum_probs=24.0
Q ss_pred ccCcCCCchhHHHHhhhhhhhhc--cCCCCeEEEEEeC
Q 042811 91 PFGVEGVGKITSLSKSYPEFLED--EGIFLIKMHDVVR 126 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~~~~--~~~Fd~~~wv~VS 126 (130)
|+|-.|+||||+++.+.++.... ...-..++|+..+
T Consensus 9 i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (131)
T PF13401_consen 9 ISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCP 46 (131)
T ss_dssp EEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHH
T ss_pred EEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeC
Confidence 89999999999999999876210 0012345577654
No 56
>PRK06851 hypothetical protein; Provisional
Probab=96.49 E-value=0.0085 Score=47.44 Aligned_cols=35 Identities=31% Similarity=0.208 Sum_probs=29.4
Q ss_pred ccCcCCCchhHHHHhhhhhhhhccCCCCeEEEEEeCC
Q 042811 91 PFGVEGVGKITSLSKSYPEFLEDEGIFLIKMHDVVRD 127 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~wv~VS~ 127 (130)
|-|..|+|||||++++.... . +..+++-++-|-+|
T Consensus 219 i~G~pG~GKstl~~~i~~~a-~-~~G~~v~~~hC~~d 253 (367)
T PRK06851 219 LKGRPGTGKSTMLKKIAKAA-E-ERGFDVEVYHCGFD 253 (367)
T ss_pred EeCCCCCcHHHHHHHHHHHH-H-hCCCeEEEEeCCCC
Confidence 99999999999999999988 3 46788777776663
No 57
>PHA00729 NTP-binding motif containing protein
Probab=96.48 E-value=0.0016 Score=48.23 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=19.8
Q ss_pred CccccCcCCCchhHHHHhhhhhh
Q 042811 88 NNWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 88 ~l~I~GmGGvGKTTLak~v~~~~ 110 (130)
.+.|.|..|+||||||..|.+..
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 34599999999999999998864
No 58
>PRK08727 hypothetical protein; Validated
Probab=96.48 E-value=0.0023 Score=47.28 Aligned_cols=34 Identities=12% Similarity=-0.102 Sum_probs=25.1
Q ss_pred ccccCcCCCchhHHHHhhhhhhhhccCCCCeEEEEEe
Q 042811 89 NWPFGVEGVGKITSLSKSYPEFLEDEGIFLIKMHDVV 125 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~wv~V 125 (130)
+.|+|..|+|||+|++.+.+..++ . ...++++++
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~~~--~-~~~~~y~~~ 77 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAAEQ--A-GRSSAYLPL 77 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH--c-CCcEEEEeH
Confidence 349999999999999999987732 2 234556554
No 59
>PRK05642 DNA replication initiation factor; Validated
Probab=96.46 E-value=0.0027 Score=46.95 Aligned_cols=21 Identities=29% Similarity=0.597 Sum_probs=19.3
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|||-.|+|||+|++.+.+..
T Consensus 49 ~l~G~~G~GKTHLl~a~~~~~ 69 (234)
T PRK05642 49 YLWGKDGVGRSHLLQAACLRF 69 (234)
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 499999999999999998876
No 60
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.45 E-value=0.0017 Score=45.54 Aligned_cols=21 Identities=29% Similarity=0.230 Sum_probs=17.7
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|.|..|+|||||++.+...
T Consensus 6 i~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 6 IFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999988643
No 61
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.43 E-value=0.0018 Score=45.53 Aligned_cols=21 Identities=14% Similarity=-0.007 Sum_probs=18.4
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
++.|+.|+||||+|+.+-...
T Consensus 6 ~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 6 ILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred EEECCCCCCHHHHHHHHHHhh
Confidence 389999999999999987764
No 62
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.43 E-value=0.0021 Score=38.59 Aligned_cols=19 Identities=32% Similarity=0.226 Sum_probs=17.4
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|.|..|+||||+++.+-+.
T Consensus 4 i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 4 ITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 6899999999999998876
No 63
>PRK12377 putative replication protein; Provisional
Probab=96.42 E-value=0.0022 Score=48.07 Aligned_cols=35 Identities=17% Similarity=-0.091 Sum_probs=26.8
Q ss_pred ccccCcCCCchhHHHHhhhhhhhhccCCCCeEEEEEeC
Q 042811 89 NWPFGVEGVGKITSLSKSYPEFLEDEGIFLIKMHDVVR 126 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~wv~VS 126 (130)
+.++|-.|+|||+||..|.+... ...-.+++++++
T Consensus 104 l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~~ 138 (248)
T PRK12377 104 FVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTVP 138 (248)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEHH
Confidence 44999999999999999999883 233345776654
No 64
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.40 E-value=0.0032 Score=46.17 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.6
Q ss_pred ccccCcCCCchhHHHHhhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEFL 111 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~~ 111 (130)
+.|||-.|+|||+|++.++|...
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~ 59 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQ 59 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 34999999999999999999873
No 65
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.40 E-value=0.0019 Score=45.58 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=19.0
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|+|+.|+|||||++.+-+..
T Consensus 7 I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 7 IFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred EEEECCCCcCHHHHHHHHHHHc
Confidence 4489999999999999997654
No 66
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.38 E-value=0.0018 Score=50.00 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=19.3
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|+|..|+||||||+.+.+..
T Consensus 55 ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 55 LLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred EEECCCCccHHHHHHHHHHHh
Confidence 499999999999999998875
No 67
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.38 E-value=0.002 Score=46.01 Aligned_cols=21 Identities=29% Similarity=0.219 Sum_probs=18.1
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|.|.+|+||||+|+.+-+.
T Consensus 3 iiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 458899999999999998664
No 68
>PRK08116 hypothetical protein; Validated
Probab=96.38 E-value=0.0025 Score=48.24 Aligned_cols=34 Identities=18% Similarity=0.050 Sum_probs=25.7
Q ss_pred ccccCcCCCchhHHHHhhhhhhhhccCCCCeEEEEEe
Q 042811 89 NWPFGVEGVGKITSLSKSYPEFLEDEGIFLIKMHDVV 125 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~wv~V 125 (130)
+.+||-.|+|||+||..|.+...+ .--.++++++
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~~---~~~~v~~~~~ 150 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELIE---KGVPVIFVNF 150 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEEH
Confidence 349999999999999999998732 2334566654
No 69
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.37 E-value=0.0021 Score=44.81 Aligned_cols=22 Identities=23% Similarity=0.216 Sum_probs=18.9
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|+|+.|+||||+++.+-+..
T Consensus 5 i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 5 LFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4489999999999999987654
No 70
>PRK13975 thymidylate kinase; Provisional
Probab=96.37 E-value=0.0021 Score=45.69 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=18.7
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|+-|+||||+++.+.+..
T Consensus 7 ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 7 FEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 88999999999999998876
No 71
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=96.37 E-value=0.002 Score=43.70 Aligned_cols=20 Identities=25% Similarity=0.147 Sum_probs=16.9
Q ss_pred ccccCcCCCchhHHHHhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~ 108 (130)
+.++|.+|+|||||++.+.+
T Consensus 3 i~~~G~~~~GKTsl~~~l~~ 22 (164)
T cd04139 3 VIVVGAGGVGKSALTLQFMY 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 34799999999999998754
No 72
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.36 E-value=0.002 Score=46.28 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=18.8
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
+|.|+.|+||||||+.+....
T Consensus 28 ~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 28 WFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 399999999999999998865
No 73
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.36 E-value=0.002 Score=45.18 Aligned_cols=19 Identities=37% Similarity=0.361 Sum_probs=17.5
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|+|..|+|||||++.+.+.
T Consensus 6 l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 6 ISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EECCCCCCHHHHHHHHHcc
Confidence 8999999999999999774
No 74
>PRK09087 hypothetical protein; Validated
Probab=96.36 E-value=0.002 Score=47.53 Aligned_cols=20 Identities=25% Similarity=0.046 Sum_probs=17.7
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|||..|+|||||++.+.+.
T Consensus 48 ~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 48 VLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 39999999999999987754
No 75
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.36 E-value=0.002 Score=47.00 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=19.4
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|+|-.|+|||+||+.+.+..
T Consensus 46 ~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 46 YLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 499999999999999999975
No 76
>PRK13695 putative NTPase; Provisional
Probab=96.35 E-value=0.0022 Score=45.04 Aligned_cols=20 Identities=35% Similarity=0.180 Sum_probs=17.3
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|.|..|+|||||++.+++.
T Consensus 4 ~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 4 GITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 37899999999999997655
No 77
>PRK13946 shikimate kinase; Provisional
Probab=96.34 E-value=0.0022 Score=45.63 Aligned_cols=22 Identities=23% Similarity=0.146 Sum_probs=19.2
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.+.||.|+||||+++.+-+..
T Consensus 13 I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 13 VVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 3489999999999999998765
No 78
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.31 E-value=0.0023 Score=50.21 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=18.8
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
++|..|+||||||+.+.+..
T Consensus 161 L~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 161 LYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred EECCCCCCHHHHHHHHHHhC
Confidence 89999999999999999865
No 79
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.31 E-value=0.0024 Score=44.77 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.3
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
++|.|..|+||||+++.+....
T Consensus 7 i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 7 VWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 3489999999999999998876
No 80
>PRK06696 uridine kinase; Validated
Probab=96.30 E-value=0.0023 Score=46.81 Aligned_cols=20 Identities=25% Similarity=0.189 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|.+|+||||||+.+....
T Consensus 27 I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 27 IDGITASGKTTFADELAEEI 46 (223)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 78999999999999998866
No 81
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.28 E-value=0.0022 Score=46.96 Aligned_cols=20 Identities=25% Similarity=0.174 Sum_probs=18.7
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|=||=|+||||||+.+.+..
T Consensus 9 I~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 9 IEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred EecccccCHHHHHHHHHHHh
Confidence 78999999999999999876
No 82
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.25 E-value=0.0046 Score=44.43 Aligned_cols=32 Identities=13% Similarity=-0.150 Sum_probs=25.0
Q ss_pred ccCcCCCchhHHHHhhhhhhhhccCCCCeEEEEEe
Q 042811 91 PFGVEGVGKITSLSKSYPEFLEDEGIFLIKMHDVV 125 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~wv~V 125 (130)
|+|.+|+|||||+..+..... ..-..++|+..
T Consensus 17 i~G~~GsGKT~l~~~~~~~~~---~~g~~v~yi~~ 48 (209)
T TIGR02237 17 IYGPPGSGKTNICMILAVNAA---RQGKKVVYIDT 48 (209)
T ss_pred EECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEC
Confidence 999999999999998776552 33467787765
No 83
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.25 E-value=0.0035 Score=46.94 Aligned_cols=35 Identities=20% Similarity=-0.058 Sum_probs=26.0
Q ss_pred ccccCcCCCchhHHHHhhhhhhhhccCCCCeEEEEEeC
Q 042811 89 NWPFGVEGVGKITSLSKSYPEFLEDEGIFLIKMHDVVR 126 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~wv~VS 126 (130)
+.++|-+|+|||+|+..+.+...+ .-..+++++++
T Consensus 102 ~~l~G~~GtGKThLa~aia~~l~~---~g~~v~~it~~ 136 (244)
T PRK07952 102 FIFSGKPGTGKNHLAAAICNELLL---RGKSVLIITVA 136 (244)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEHH
Confidence 349999999999999999998732 22355666553
No 84
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.24 E-value=0.0027 Score=54.32 Aligned_cols=20 Identities=30% Similarity=0.277 Sum_probs=18.8
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
+||..|+||||||+.+.+..
T Consensus 57 L~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 57 LYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 99999999999999999865
No 85
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.22 E-value=0.0027 Score=45.48 Aligned_cols=20 Identities=25% Similarity=0.165 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+....
T Consensus 10 i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 10 LSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred EECCCCCCHHHHHHHHHhhC
Confidence 99999999999999998765
No 86
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.21 E-value=0.0026 Score=43.84 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=18.3
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|..|+|||||++.+.+.
T Consensus 18 ~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 18 LILGLDNAGKTTILKQLASE 37 (173)
T ss_pred EEEccCCCCHHHHHHHHhcC
Confidence 39999999999999999885
No 87
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.20 E-value=0.0029 Score=39.00 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=17.8
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|.+|+||||++..+-...
T Consensus 4 ~~g~~G~Gktt~~~~l~~~l 23 (99)
T cd01983 4 VTGKGGVGKTTLAANLAAAL 23 (99)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 67899999999999988876
No 88
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=96.18 E-value=0.0029 Score=41.89 Aligned_cols=21 Identities=29% Similarity=0.189 Sum_probs=18.3
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.++|..|+|||||+..+....
T Consensus 5 ~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 5 VIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred EEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999987665
No 89
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=96.18 E-value=0.0026 Score=47.81 Aligned_cols=17 Identities=29% Similarity=0.472 Sum_probs=14.3
Q ss_pred ccCcCCCchhHHHHhhh
Q 042811 91 PFGVEGVGKITSLSKSY 107 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~ 107 (130)
|+|-|||||||++-.+-
T Consensus 5 ~~gKGGVGKTT~a~nLA 21 (275)
T TIGR01287 5 IYGKGGIGKSTTTQNIA 21 (275)
T ss_pred EeCCCcCcHHHHHHHHH
Confidence 68999999999877653
No 90
>PRK14530 adenylate kinase; Provisional
Probab=96.17 E-value=0.003 Score=45.89 Aligned_cols=22 Identities=36% Similarity=0.362 Sum_probs=18.6
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|+|+.|+||||+++.+....
T Consensus 6 I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 6 ILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999986544
No 91
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.16 E-value=0.0027 Score=42.38 Aligned_cols=20 Identities=30% Similarity=0.238 Sum_probs=18.5
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+....
T Consensus 16 i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 16 IVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEESTTSSHHHHHHHHTTSS
T ss_pred EEccCCCccccceeeecccc
Confidence 99999999999999998765
No 92
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=96.16 E-value=0.003 Score=43.32 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=17.5
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|.+|+|||||+..+.+.
T Consensus 3 i~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 3 VIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999887655
No 93
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.15 E-value=0.0029 Score=41.23 Aligned_cols=19 Identities=26% Similarity=0.240 Sum_probs=17.7
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|.|+.|+|||||...+.+.
T Consensus 4 iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 4 IIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEESTTSSHHHHHHHHHTS
T ss_pred EECCCCCCHHHHHHHHhcc
Confidence 7899999999999999974
No 94
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=96.14 E-value=0.0031 Score=42.97 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=16.8
Q ss_pred ccccCcCCCchhHHHHhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~ 108 (130)
+.|+|.+|+|||||++.+.+
T Consensus 3 i~v~G~~~vGKTsli~~l~~ 22 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVE 22 (161)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 34789999999999999743
No 95
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.13 E-value=0.0032 Score=42.80 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=16.8
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.++|.+|+|||||+..+.+.
T Consensus 4 ~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 4 ISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 47899999999999987543
No 96
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.12 E-value=0.003 Score=47.92 Aligned_cols=20 Identities=30% Similarity=0.323 Sum_probs=18.6
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
++|.+|+||||++|+|+.-.
T Consensus 32 liGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 32 LIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred EECCCCCcHHHHHHHHhccc
Confidence 99999999999999998755
No 97
>CHL00181 cbbX CbbX; Provisional
Probab=96.06 E-value=0.0056 Score=46.76 Aligned_cols=21 Identities=29% Similarity=0.129 Sum_probs=18.7
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
+++|..|+||||+|+.+.+..
T Consensus 63 ll~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 63 SFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999997765
No 98
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.06 E-value=0.0027 Score=48.60 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=19.3
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
+++||.|.||||..|.++...
T Consensus 23 lVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 23 LVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred EEEecCCCCchhHHHHHHHHH
Confidence 489999999999999999876
No 99
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=96.06 E-value=0.0037 Score=41.69 Aligned_cols=22 Identities=27% Similarity=0.179 Sum_probs=17.9
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.++|..|+|||||+..+.+..
T Consensus 3 i~~~G~~~~GKStl~~~l~~~~ 24 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDGK 24 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 3478999999999999875543
No 100
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.05 E-value=0.0034 Score=47.06 Aligned_cols=20 Identities=30% Similarity=0.149 Sum_probs=17.7
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|.+|+|||||++.|-.-.
T Consensus 34 ilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 34 ILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999986643
No 101
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=96.04 E-value=0.0036 Score=43.99 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=18.7
Q ss_pred CccccCcCCCchhHHHHhhhhh
Q 042811 88 NNWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 88 ~l~I~GmGGvGKTTLak~v~~~ 109 (130)
++.|+|.+|+|||||++.+.+.
T Consensus 21 ki~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 21 KILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3459999999999999998764
No 102
>PTZ00202 tuzin; Provisional
Probab=96.04 E-value=0.0018 Score=52.72 Aligned_cols=20 Identities=20% Similarity=0.167 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|+.|+|||||++.+....
T Consensus 291 LtG~~G~GKTTLlR~~~~~l 310 (550)
T PTZ00202 291 FTGFRGCGKSSLCRSAVRKE 310 (550)
T ss_pred EECCCCCCHHHHHHHHHhcC
Confidence 99999999999999988754
No 103
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.03 E-value=0.0054 Score=49.55 Aligned_cols=34 Identities=18% Similarity=0.045 Sum_probs=25.0
Q ss_pred cccCcCCCchhHHHHhhhhhhhhccCCCC-eEEEEEe
Q 042811 90 WPFGVEGVGKITSLSKSYPEFLEDEGIFL-IKMHDVV 125 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~~~~~~~Fd-~~~wv~V 125 (130)
.|||-.|+|||+|++.+.|... +...+ .+++++.
T Consensus 134 ~lyG~~G~GKTHLl~ai~~~l~--~~~~~~~v~yi~~ 168 (440)
T PRK14088 134 FIYGGVGLGKTHLLQSIGNYVV--QNEPDLRVMYITS 168 (440)
T ss_pred EEEcCCCCcHHHHHHHHHHHHH--HhCCCCeEEEEEH
Confidence 3999999999999999999872 22333 3555543
No 104
>PRK14531 adenylate kinase; Provisional
Probab=96.03 E-value=0.0038 Score=44.27 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=19.4
Q ss_pred CccccCcCCCchhHHHHhhhhhh
Q 042811 88 NNWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 88 ~l~I~GmGGvGKTTLak~v~~~~ 110 (130)
.+.|.|..|+||||+++.+-+..
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 45589999999999999986654
No 105
>PRK13948 shikimate kinase; Provisional
Probab=96.02 E-value=0.004 Score=44.58 Aligned_cols=21 Identities=19% Similarity=-0.002 Sum_probs=18.6
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.++||.|+||||+++.+-+..
T Consensus 14 ~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 14 ALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred EEECCCCCCHHHHHHHHHHHc
Confidence 389999999999999998754
No 106
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.02 E-value=0.0037 Score=41.13 Aligned_cols=17 Identities=24% Similarity=0.216 Sum_probs=15.8
Q ss_pred ccCcCCCchhHHHHhhh
Q 042811 91 PFGVEGVGKITSLSKSY 107 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~ 107 (130)
|.|..|+|||||++.+.
T Consensus 20 I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 20 ITGDSGIGKTELALELI 36 (107)
T ss_pred EEcCCCCCHHHHHHHhh
Confidence 99999999999999964
No 107
>PRK14532 adenylate kinase; Provisional
Probab=96.02 E-value=0.0039 Score=44.14 Aligned_cols=20 Identities=25% Similarity=0.180 Sum_probs=16.9
Q ss_pred ccccCcCCCchhHHHHhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~ 108 (130)
+.|.|+.|+||||+++.+-+
T Consensus 3 i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 34789999999999998753
No 108
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=96.01 E-value=0.0039 Score=42.07 Aligned_cols=21 Identities=24% Similarity=0.183 Sum_probs=17.2
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||++.+.+.
T Consensus 4 i~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 347899999999999887543
No 109
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.00 E-value=0.0071 Score=48.06 Aligned_cols=20 Identities=30% Similarity=0.341 Sum_probs=19.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||+|++.+.+..
T Consensus 141 l~G~~G~GKThL~~ai~~~l 160 (405)
T TIGR00362 141 IYGGVGLGKTHLLHAIGNEI 160 (405)
T ss_pred EECCCCCcHHHHHHHHHHHH
Confidence 99999999999999999987
No 110
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=95.99 E-value=0.0036 Score=47.21 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=15.4
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|+|-|||||||++-++---
T Consensus 6 ~~gKGGVGKTT~a~nLA~~ 24 (279)
T PRK13230 6 FYGKGGIGKSTTVCNIAAA 24 (279)
T ss_pred EECCCCCcHHHHHHHHHHH
Confidence 6799999999988776443
No 111
>PRK13768 GTPase; Provisional
Probab=95.99 E-value=0.0035 Score=46.94 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=17.6
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|.|.||+||||++..+..-.
T Consensus 6 ~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 6 FFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred EEECCCCccHHHHHHHHHHHH
Confidence 388999999999998876555
No 112
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.99 E-value=0.0039 Score=45.13 Aligned_cols=20 Identities=30% Similarity=0.074 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.+....
T Consensus 35 l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 35 IVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEcCCCCCHHHHHHHHhCCc
Confidence 99999999999999997754
No 113
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.97 E-value=0.0057 Score=49.53 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=19.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|||..|+|||+|++.+.+..
T Consensus 146 L~G~~G~GKTHLl~Ai~~~l 165 (445)
T PRK12422 146 LFGPEGSGKTHLMQAAVHAL 165 (445)
T ss_pred EEcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999987
No 114
>PRK07667 uridine kinase; Provisional
Probab=95.95 E-value=0.0043 Score=44.47 Aligned_cols=20 Identities=20% Similarity=0.167 Sum_probs=18.5
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|-|..|+|||||++.+....
T Consensus 22 I~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 22 IDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 88999999999999998866
No 115
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=95.95 E-value=0.0043 Score=42.46 Aligned_cols=20 Identities=25% Similarity=0.117 Sum_probs=17.2
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|..|+|||||++.+.+.
T Consensus 4 ~i~G~~~~GKSsli~~l~~~ 23 (171)
T cd00157 4 VVVGDGAVGKTCLLISYTTG 23 (171)
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 47899999999999987654
No 116
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=95.94 E-value=0.0043 Score=42.10 Aligned_cols=21 Identities=33% Similarity=0.289 Sum_probs=17.5
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.++|..|+|||||++.+.+.
T Consensus 3 v~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999998643
No 117
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=95.92 E-value=0.0038 Score=46.09 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=17.3
Q ss_pred ccccCcCCCchhHHHHhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~ 108 (130)
++|||..|+||||||+.+-+
T Consensus 15 ~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 15 YLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred EEEECCCCCCHHHHHHhcCC
Confidence 34999999999999998754
No 118
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.92 E-value=0.0042 Score=46.87 Aligned_cols=24 Identities=29% Similarity=0.209 Sum_probs=20.1
Q ss_pred CCcc-ccCcCCCchhHHHHhhhhhh
Q 042811 87 GNNW-PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 87 ~~l~-I~GmGGvGKTTLak~v~~~~ 110 (130)
.++. |.|..|+|||||+|.+..-.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3344 99999999999999998854
No 119
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.91 E-value=0.0047 Score=44.75 Aligned_cols=20 Identities=25% Similarity=0.149 Sum_probs=17.9
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|.+|+||||+++.+....
T Consensus 8 i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 8 IGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred EECCCCCCHHHHHHHHHHhc
Confidence 89999999999999887754
No 120
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.91 E-value=0.002 Score=50.64 Aligned_cols=20 Identities=30% Similarity=0.262 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
++|..|+||||||+.+.+..
T Consensus 43 ~~Gp~G~GKTtla~~la~~l 62 (363)
T PRK14961 43 LSGTRGVGKTTIARLLAKSL 62 (363)
T ss_pred EecCCCCCHHHHHHHHHHHh
Confidence 99999999999999987765
No 121
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.89 E-value=0.0082 Score=45.74 Aligned_cols=22 Identities=23% Similarity=0.072 Sum_probs=18.8
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
++++|..|+||||+|+.+....
T Consensus 61 vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 61 MSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 3489999999999998887765
No 122
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.89 E-value=0.0045 Score=44.76 Aligned_cols=20 Identities=30% Similarity=0.152 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 34 i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 34 LVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 123
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.88 E-value=0.0047 Score=43.95 Aligned_cols=20 Identities=35% Similarity=0.393 Sum_probs=18.7
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+...+
T Consensus 11 ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 11 IAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred EECCCCChHHHHHHHHHHHH
Confidence 89999999999999999876
No 124
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.88 E-value=0.0044 Score=46.27 Aligned_cols=16 Identities=38% Similarity=0.312 Sum_probs=14.4
Q ss_pred ccCcCCCchhHHHHhh
Q 042811 91 PFGVEGVGKITSLSKS 106 (130)
Q Consensus 91 I~GmGGvGKTTLak~v 106 (130)
|+|-||+||||++..+
T Consensus 5 I~GKGG~GKTtiaall 20 (255)
T COG3640 5 ITGKGGVGKTTIAALL 20 (255)
T ss_pred EecCCCccHHHHHHHH
Confidence 7899999999998874
No 125
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.87 E-value=0.0047 Score=44.46 Aligned_cols=20 Identities=30% Similarity=0.219 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 32 l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 32 IVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 99999999999999998754
No 126
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.86 E-value=0.0063 Score=47.44 Aligned_cols=37 Identities=19% Similarity=0.071 Sum_probs=27.6
Q ss_pred CCccccCcCCCchhHHHHhhhhhhhhccCCCCeEEEEEeC
Q 042811 87 GNNWPFGVEGVGKITSLSKSYPEFLEDEGIFLIKMHDVVR 126 (130)
Q Consensus 87 ~~l~I~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~wv~VS 126 (130)
..+.++|-.|+|||+||..|.+...+ ..+ .|++++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~--~g~-~V~y~t~~ 220 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLD--RGK-SVIYRTAD 220 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHH--CCC-eEEEEEHH
Confidence 44459999999999999999998742 333 46666654
No 127
>PRK06526 transposase; Provisional
Probab=95.86 E-value=0.0046 Score=46.49 Aligned_cols=24 Identities=21% Similarity=-0.015 Sum_probs=20.8
Q ss_pred CccccCcCCCchhHHHHhhhhhhh
Q 042811 88 NNWPFGVEGVGKITSLSKSYPEFL 111 (130)
Q Consensus 88 ~l~I~GmGGvGKTTLak~v~~~~~ 111 (130)
.+.|+|.+|+|||+||..+.+..+
T Consensus 100 nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHH
Confidence 445999999999999999988763
No 128
>PRK04182 cytidylate kinase; Provisional
Probab=95.86 E-value=0.0051 Score=42.78 Aligned_cols=19 Identities=26% Similarity=0.062 Sum_probs=16.7
Q ss_pred cccCcCCCchhHHHHhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~ 108 (130)
.|.|+.|+||||+++.+.+
T Consensus 4 ~i~G~~GsGKstia~~la~ 22 (180)
T PRK04182 4 TISGPPGSGKTTVARLLAE 22 (180)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4789999999999999864
No 129
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.86 E-value=0.0037 Score=48.66 Aligned_cols=15 Identities=40% Similarity=0.390 Sum_probs=13.8
Q ss_pred ccCcCCCchhHHHHh
Q 042811 91 PFGVEGVGKITSLSK 105 (130)
Q Consensus 91 I~GmGGvGKTTLak~ 105 (130)
..|.|||||||+|-.
T Consensus 7 f~GKGGVGKTT~aaA 21 (322)
T COG0003 7 FTGKGGVGKTTIAAA 21 (322)
T ss_pred EecCCcccHHHHHHH
Confidence 679999999999987
No 130
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.85 E-value=0.0051 Score=44.33 Aligned_cols=20 Identities=30% Similarity=0.258 Sum_probs=18.8
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|.+|+|||||++.++++.
T Consensus 9 lsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 9 LSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred EECCCCCCHHHHHHHHHhhc
Confidence 88999999999999999976
No 131
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.85 E-value=0.0049 Score=43.74 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 23 i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 23 LLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 132
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=95.84 E-value=0.0052 Score=41.90 Aligned_cols=20 Identities=25% Similarity=0.172 Sum_probs=16.6
Q ss_pred ccccCcCCCchhHHHHhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~ 108 (130)
+.|+|-+|+|||||++.+.+
T Consensus 3 i~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 34789999999999988753
No 133
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.84 E-value=0.0024 Score=52.20 Aligned_cols=20 Identities=20% Similarity=0.215 Sum_probs=18.8
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+||||||+.+....
T Consensus 44 L~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 44 LLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred EECCCChhHHHHHHHHHHHh
Confidence 99999999999999999865
No 134
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.83 E-value=0.0052 Score=45.28 Aligned_cols=20 Identities=25% Similarity=0.238 Sum_probs=19.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|-|-+|+||||+|+.+...+
T Consensus 13 IaG~SgSGKTTva~~l~~~~ 32 (218)
T COG0572 13 IAGGSGSGKTTVAKELSEQL 32 (218)
T ss_pred EeCCCCCCHHHHHHHHHHHh
Confidence 88999999999999999988
No 135
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.83 E-value=0.0097 Score=48.02 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=19.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||+|++.+.+..
T Consensus 153 l~G~~G~GKThL~~ai~~~~ 172 (450)
T PRK00149 153 IYGGVGLGKTHLLHAIGNYI 172 (450)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999987
No 136
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.83 E-value=0.005 Score=43.13 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=20.5
Q ss_pred CCCCccccCcCCCchhHHHHhhhhh
Q 042811 85 RNGNNWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 85 ~~~~l~I~GmGGvGKTTLak~v~~~ 109 (130)
.+.+|+|.|..|+|||||+..|...
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHH
Confidence 3455669999999999999998754
No 137
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.83 E-value=0.005 Score=42.18 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=19.6
Q ss_pred cccCcCCCchhHHHHhhhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEFLE 112 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~~~ 112 (130)
.|+|..|+|||||++.+-|...+
T Consensus 4 ~VvG~~~sGKTTl~~~Li~~l~~ 26 (140)
T PF03205_consen 4 QVVGPKNSGKTTLIRKLINELKR 26 (140)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHhH
Confidence 37999999999999999776653
No 138
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=95.83 E-value=0.005 Score=41.15 Aligned_cols=21 Identities=29% Similarity=0.161 Sum_probs=17.5
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|.+|+|||||+..+.+.
T Consensus 3 v~liG~~~vGKSsL~~~l~~~ 23 (142)
T TIGR02528 3 IMFIGSVGCGKTTLTQALQGE 23 (142)
T ss_pred EEEECCCCCCHHHHHHHHcCC
Confidence 447999999999999987544
No 139
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.82 E-value=0.0051 Score=45.50 Aligned_cols=20 Identities=30% Similarity=0.112 Sum_probs=18.5
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|.+|+|||||++-++.-.
T Consensus 33 iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 33 IIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EECCCCCCHHHHHHHHHCCc
Confidence 99999999999999998754
No 140
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.82 E-value=0.0054 Score=43.52 Aligned_cols=21 Identities=38% Similarity=0.314 Sum_probs=18.3
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|.|..|.|||||++.+....
T Consensus 7 ~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 7 ILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred EEECCCCCCHHHHHHHHHHhc
Confidence 389999999999999988754
No 141
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.81 E-value=0.0051 Score=44.28 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.+....
T Consensus 31 i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 31 LLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 142
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.80 E-value=0.004 Score=51.45 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|-.|+||||+|+.+++..
T Consensus 91 i~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 91 IYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 99999999999999998753
No 143
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.79 E-value=0.0085 Score=45.63 Aligned_cols=32 Identities=22% Similarity=0.212 Sum_probs=24.7
Q ss_pred ccCcCCCchhHHHHhhhhhhhhccCCCC-eEEEEEe
Q 042811 91 PFGVEGVGKITSLSKSYPEFLEDEGIFL-IKMHDVV 125 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~~~~~~~Fd-~~~wv~V 125 (130)
|.|-.|+|||||++.+++.. +++|+ .++++-+
T Consensus 74 If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~i 106 (274)
T cd01133 74 LFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGV 106 (274)
T ss_pred EecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEe
Confidence 99999999999999999977 33454 4455544
No 144
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.79 E-value=0.0054 Score=45.03 Aligned_cols=20 Identities=25% Similarity=0.084 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.+.+..
T Consensus 38 i~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 38 IAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 68999999999999988866
No 145
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.79 E-value=0.0053 Score=45.02 Aligned_cols=20 Identities=30% Similarity=0.232 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|.|||||++.+....
T Consensus 31 l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 31 IIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 146
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.77 E-value=0.0054 Score=44.52 Aligned_cols=20 Identities=30% Similarity=0.122 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 35 i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 35 LVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 147
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.77 E-value=0.0054 Score=43.63 Aligned_cols=18 Identities=33% Similarity=0.398 Sum_probs=16.8
Q ss_pred ccCcCCCchhHHHHhhhh
Q 042811 91 PFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~ 108 (130)
|.|..|+|||||++.+..
T Consensus 26 l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 26 VTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EECCCCCCHHHHHHHHhh
Confidence 999999999999999864
No 148
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=95.77 E-value=0.005 Score=46.02 Aligned_cols=16 Identities=38% Similarity=0.582 Sum_probs=13.1
Q ss_pred ccCcCCCchhHHHHhh
Q 042811 91 PFGVEGVGKITSLSKS 106 (130)
Q Consensus 91 I~GmGGvGKTTLak~v 106 (130)
+.|-|||||||++-++
T Consensus 5 ~~gKGGVGKTT~~~nL 20 (268)
T TIGR01281 5 VYGKGGIGKSTTSSNL 20 (268)
T ss_pred EEcCCcCcHHHHHHHH
Confidence 4589999999977664
No 149
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=95.77 E-value=0.0057 Score=41.92 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=16.9
Q ss_pred ccccCcCCCchhHHHHhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~ 108 (130)
+.|+|..|+|||||+..+..
T Consensus 6 v~vvG~~~~GKTsli~~l~~ 25 (165)
T cd01864 6 IILIGDSNVGKTCVVQRFKS 25 (165)
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 34899999999999988754
No 150
>PRK06921 hypothetical protein; Provisional
Probab=95.76 E-value=0.0079 Score=45.47 Aligned_cols=36 Identities=17% Similarity=0.100 Sum_probs=26.1
Q ss_pred CccccCcCCCchhHHHHhhhhhhhhccCCCCeEEEEEe
Q 042811 88 NNWPFGVEGVGKITSLSKSYPEFLEDEGIFLIKMHDVV 125 (130)
Q Consensus 88 ~l~I~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~wv~V 125 (130)
.+.++|-.|+|||+||..|.+...+ ++. ..+++++.
T Consensus 119 ~l~l~G~~G~GKThLa~aia~~l~~-~~g-~~v~y~~~ 154 (266)
T PRK06921 119 SIALLGQPGSGKTHLLTAAANELMR-KKG-VPVLYFPF 154 (266)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHhh-hcC-ceEEEEEH
Confidence 3459999999999999999997732 113 34566654
No 151
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.75 E-value=0.011 Score=44.17 Aligned_cols=33 Identities=15% Similarity=-0.162 Sum_probs=28.4
Q ss_pred ccCcCCCchhHHHHhhhhhhhhccCCCCeEEEEEeC
Q 042811 91 PFGVEGVGKITSLSKSYPEFLEDEGIFLIKMHDVVR 126 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~wv~VS 126 (130)
|+|-.|+|||+++.+.-... ....+.++||+.+
T Consensus 28 I~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~ 60 (260)
T COG0467 28 ITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTE 60 (260)
T ss_pred EEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEec
Confidence 99999999999999976655 2458899999987
No 152
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.75 E-value=0.0056 Score=44.17 Aligned_cols=20 Identities=30% Similarity=0.174 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 31 i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 31 LLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999997753
No 153
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=95.75 E-value=0.0058 Score=41.87 Aligned_cols=21 Identities=29% Similarity=0.254 Sum_probs=17.8
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|.+|+|||||+..+.+.
T Consensus 5 i~i~G~~~vGKSsli~~~~~~ 25 (166)
T cd01869 5 LLLIGDSGVGKSCLLLRFADD 25 (166)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 448999999999999998653
No 154
>PRK08181 transposase; Validated
Probab=95.75 E-value=0.0057 Score=46.41 Aligned_cols=35 Identities=20% Similarity=0.057 Sum_probs=26.0
Q ss_pred CccccCcCCCchhHHHHhhhhhhhhccCCCCeEEEEEe
Q 042811 88 NNWPFGVEGVGKITSLSKSYPEFLEDEGIFLIKMHDVV 125 (130)
Q Consensus 88 ~l~I~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~wv~V 125 (130)
.+.++|..|+|||.||..+.+..++ ..-.++++++
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~---~g~~v~f~~~ 142 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIE---NGWRVLFTRT 142 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHH---cCCceeeeeH
Confidence 3559999999999999999987742 2234566554
No 155
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=95.74 E-value=0.0065 Score=40.33 Aligned_cols=20 Identities=30% Similarity=0.187 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|.||+||||++..+...+
T Consensus 4 ~~GkgG~GKTt~a~~la~~l 23 (116)
T cd02034 4 ITGKGGVGKTTIAALLARYL 23 (116)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 68999999999999998876
No 156
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=95.74 E-value=0.005 Score=45.79 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=15.0
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|.|-|||||||++-++-.-
T Consensus 6 v~~KGGvGKTT~~~nLA~~ 24 (270)
T cd02040 6 IYGKGGIGKSTTTQNLSAA 24 (270)
T ss_pred EEeCCcCCHHHHHHHHHHH
Confidence 5689999999988776443
No 157
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.74 E-value=0.0057 Score=44.30 Aligned_cols=20 Identities=35% Similarity=0.464 Sum_probs=18.5
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|.|||||++.+..-.
T Consensus 33 i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 33 LLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 158
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=95.74 E-value=0.0061 Score=48.42 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=18.7
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
++|..|+|||+||+.+.+..
T Consensus 170 L~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 170 LYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred EECCCCCChHHHHHHHHHHh
Confidence 89999999999999999865
No 159
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=95.73 E-value=0.006 Score=41.48 Aligned_cols=21 Identities=19% Similarity=0.129 Sum_probs=17.6
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|.+|+|||||++.+.+.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (163)
T cd01860 4 LVLLGDSSVGKSSLVLRFVKN 24 (163)
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 347999999999999887664
No 160
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.73 E-value=0.0057 Score=44.05 Aligned_cols=20 Identities=25% Similarity=0.218 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+..-.
T Consensus 30 i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 30 LLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 161
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.73 E-value=0.0059 Score=44.47 Aligned_cols=20 Identities=30% Similarity=0.170 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 31 i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 31 LIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EECCCCCCHHHHHHHHHhhc
Confidence 99999999999999997743
No 162
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.72 E-value=0.005 Score=47.47 Aligned_cols=16 Identities=38% Similarity=0.277 Sum_probs=13.9
Q ss_pred ccCcCCCchhHHHHhh
Q 042811 91 PFGVEGVGKITSLSKS 106 (130)
Q Consensus 91 I~GmGGvGKTTLak~v 106 (130)
+.|-|||||||+|-..
T Consensus 6 ~~GKGGVGKTT~aaA~ 21 (305)
T PF02374_consen 6 FGGKGGVGKTTVAAAL 21 (305)
T ss_dssp EEESTTSSHHHHHHHH
T ss_pred EecCCCCCcHHHHHHH
Confidence 6799999999999664
No 163
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.72 E-value=0.0063 Score=42.76 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=17.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|-|.-|+||||+++.+.+..
T Consensus 5 ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 5 FEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 67999999999999987543
No 164
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.72 E-value=0.0059 Score=43.86 Aligned_cols=20 Identities=25% Similarity=0.114 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 31 i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 31 LTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 99999999999999998754
No 165
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.71 E-value=0.0055 Score=48.21 Aligned_cols=18 Identities=33% Similarity=0.329 Sum_probs=16.8
Q ss_pred ccCcCCCchhHHHHhhhh
Q 042811 91 PFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~ 108 (130)
+.|.+|+|||||++.|-.
T Consensus 36 lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 36 LLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 999999999999999865
No 166
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.71 E-value=0.0059 Score=44.01 Aligned_cols=20 Identities=35% Similarity=0.416 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 33 l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 33 LTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999997754
No 167
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.70 E-value=0.0062 Score=42.90 Aligned_cols=20 Identities=30% Similarity=0.125 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 31 i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 31 LLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999997643
No 168
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=95.70 E-value=0.0064 Score=41.75 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=15.2
Q ss_pred cccCcCCCchhHHHHhhh
Q 042811 90 WPFGVEGVGKITSLSKSY 107 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~ 107 (130)
.|+|-.|+|||||+..+.
T Consensus 4 ~vvG~~~vGKTsli~~~~ 21 (161)
T cd04124 4 ILLGDSAVGKSKLVERFL 21 (161)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 478999999999997653
No 169
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.69 E-value=0.006 Score=44.74 Aligned_cols=20 Identities=30% Similarity=0.202 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+..-.
T Consensus 32 i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 32 LIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EECCCCCCHHHHHHHHhCCc
Confidence 99999999999999997653
No 170
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.69 E-value=0.0058 Score=45.74 Aligned_cols=20 Identities=25% Similarity=0.008 Sum_probs=17.6
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|-.|+|||||++.+-.-.
T Consensus 38 ivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 38 IVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred EEcCCCCCHHHHHHHHhccc
Confidence 99999999999999986543
No 171
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=95.69 E-value=0.0064 Score=41.80 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=16.7
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|.+|+|||||++.+-+.
T Consensus 5 ~~vG~~~vGKTsli~~~~~~ 24 (165)
T cd04140 5 VVFGAGGVGKSSLVLRFVKG 24 (165)
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 47999999999999887543
No 172
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=95.69 E-value=0.0064 Score=41.91 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=16.2
Q ss_pred cccCcCCCchhHHHHhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~ 108 (130)
.|+|.+|+|||||++.+-+
T Consensus 5 ~liG~~~~GKTsli~~~~~ 23 (168)
T cd04177 5 VVLGAGGVGKSALTVQFVQ 23 (168)
T ss_pred EEECCCCCCHHHHHHHHHh
Confidence 4799999999999988543
No 173
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.68 E-value=0.0062 Score=44.20 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 31 i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 31 LLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 174
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.68 E-value=0.011 Score=42.93 Aligned_cols=32 Identities=16% Similarity=-0.093 Sum_probs=24.6
Q ss_pred ccCcCCCchhHHHHhhhhhhhhccCCCCeEEEEEe
Q 042811 91 PFGVEGVGKITSLSKSYPEFLEDEGIFLIKMHDVV 125 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~wv~V 125 (130)
|+|.+|+|||||+..+..... ..-..++|++.
T Consensus 28 i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~ 59 (225)
T PRK09361 28 IYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDT 59 (225)
T ss_pred EECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEC
Confidence 999999999999999877652 23356677653
No 175
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.67 E-value=0.0062 Score=43.87 Aligned_cols=20 Identities=40% Similarity=0.418 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|-.|.|||||++.+....
T Consensus 32 i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 32 LVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 99999999999999998754
No 176
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.67 E-value=0.0067 Score=44.95 Aligned_cols=22 Identities=32% Similarity=0.155 Sum_probs=19.0
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|.|+.|+||||+|+.+-+..
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4499999999999999987654
No 177
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.66 E-value=0.0063 Score=44.72 Aligned_cols=20 Identities=30% Similarity=0.214 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|-.|+|||||++.+....
T Consensus 33 l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 33 IIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EECCCCCCHHHHHHHHhCCc
Confidence 99999999999999997654
No 178
>PRK06761 hypothetical protein; Provisional
Probab=95.65 E-value=0.0066 Score=46.43 Aligned_cols=31 Identities=16% Similarity=0.129 Sum_probs=23.9
Q ss_pred cccCcCCCchhHHHHhhhhhhhhccCCCCeEEE
Q 042811 90 WPFGVEGVGKITSLSKSYPEFLEDEGIFLIKMH 122 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~w 122 (130)
+|.|..|+|||||++.+.+.. . ...++...+
T Consensus 7 vI~G~~GsGKTTla~~L~~~L-~-~~g~~v~~~ 37 (282)
T PRK06761 7 IIEGLPGFGKSTTAKMLNDIL-S-QNGIEVELY 37 (282)
T ss_pred EEECCCCCCHHHHHHHHHHhc-C-cCceEEEEE
Confidence 389999999999999999987 4 234554443
No 179
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=95.65 E-value=0.0061 Score=46.59 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=14.1
Q ss_pred ccCcCCCchhHHHHhh
Q 042811 91 PFGVEGVGKITSLSKS 106 (130)
Q Consensus 91 I~GmGGvGKTTLak~v 106 (130)
|+|-|||||||++-.+
T Consensus 5 ~~gKGGVGKTTta~nL 20 (290)
T CHL00072 5 VYGKGGIGKSTTSCNI 20 (290)
T ss_pred EECCCCCcHHHHHHHH
Confidence 6899999999988764
No 180
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.64 E-value=0.0065 Score=46.05 Aligned_cols=20 Identities=30% Similarity=0.263 Sum_probs=17.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|..|+||||+|+.+-+..
T Consensus 7 l~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 7 TVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEcCCCCCHHHHHHHHHHHC
Confidence 78999999999999986543
No 181
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.64 E-value=0.0064 Score=43.86 Aligned_cols=20 Identities=30% Similarity=0.298 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|.|||||++.+....
T Consensus 30 l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 30 IVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EECCCCCCHHHHHHHHcCCC
Confidence 99999999999999998754
No 182
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=95.64 E-value=0.0066 Score=41.74 Aligned_cols=18 Identities=33% Similarity=0.353 Sum_probs=16.0
Q ss_pred ccccCcCCCchhHHHHhh
Q 042811 89 NWPFGVEGVGKITSLSKS 106 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v 106 (130)
+.++|.+|+|||||+..+
T Consensus 3 v~~~G~~~~GKTsli~~l 20 (159)
T cd04150 3 ILMVGLDAAGKTTILYKL 20 (159)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 347899999999999998
No 183
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.63 E-value=0.0065 Score=43.90 Aligned_cols=21 Identities=33% Similarity=0.178 Sum_probs=18.6
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|.|..|.|||||++.+....
T Consensus 27 ~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 27 GIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred EEECCCCCCHHHHHHHHhCCC
Confidence 399999999999999997754
No 184
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=95.62 E-value=0.0025 Score=47.75 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=19.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
+||..|+|||+|+|.+.+..
T Consensus 57 L~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 57 LWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred EecCCCCCHHHHHHHHHHHH
Confidence 99999999999999999877
No 185
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=95.62 E-value=0.0065 Score=46.22 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=17.8
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|.+|+|||||+.++-..+
T Consensus 6 i~G~~gSGKTTLi~~Li~~L 25 (274)
T PRK14493 6 IVGYKATGKTTLVERLVDRL 25 (274)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 88999999999999987665
No 186
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.61 E-value=0.0065 Score=43.99 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=13.4
Q ss_pred ccCcCCCchhHHHHhh
Q 042811 91 PFGVEGVGKITSLSKS 106 (130)
Q Consensus 91 I~GmGGvGKTTLak~v 106 (130)
|.|-||+||||++-++
T Consensus 5 v~gKGGvGKTt~~~nL 20 (212)
T cd02117 5 IYGKGGIGKSTTSQNL 20 (212)
T ss_pred EECCCcCcHHHHHHHH
Confidence 5699999999977664
No 187
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.61 E-value=0.0067 Score=44.36 Aligned_cols=20 Identities=25% Similarity=0.112 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|.|||||++.+....
T Consensus 36 l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 36 IIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999997754
No 188
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.60 E-value=0.0098 Score=44.69 Aligned_cols=35 Identities=20% Similarity=0.071 Sum_probs=27.4
Q ss_pred ccccCcCCCchhHHHHhhhhhhhhccCCCCeEEEEEeC
Q 042811 89 NWPFGVEGVGKITSLSKSYPEFLEDEGIFLIKMHDVVR 126 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~wv~VS 126 (130)
+.++|-.|+|||.||..+.|..+ +..+. |++++++
T Consensus 108 l~l~G~~G~GKThLa~Ai~~~l~--~~g~s-v~f~~~~ 142 (254)
T COG1484 108 LVLLGPPGVGKTHLAIAIGNELL--KAGIS-VLFITAP 142 (254)
T ss_pred EEEECCCCCcHHHHHHHHHHHHH--HcCCe-EEEEEHH
Confidence 34999999999999999999984 34555 4666654
No 189
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.60 E-value=0.0067 Score=44.04 Aligned_cols=20 Identities=25% Similarity=0.180 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|.|||||++.+....
T Consensus 36 i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 36 LVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999997754
No 190
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.60 E-value=0.0065 Score=47.55 Aligned_cols=20 Identities=30% Similarity=0.165 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
++|..|+|||||++.|-.-.
T Consensus 34 llGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 34 LLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999987644
No 191
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.59 E-value=0.0071 Score=44.84 Aligned_cols=20 Identities=30% Similarity=0.074 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||+..+..-.
T Consensus 36 I~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 36 IVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EECCCCCCHHHHHHHHhccc
Confidence 99999999999999987644
No 192
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.58 E-value=0.0071 Score=43.83 Aligned_cols=20 Identities=30% Similarity=0.069 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 36 i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 36 IVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999997754
No 193
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=95.58 E-value=0.0075 Score=40.65 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=17.1
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|-+|+|||||+..+.+.
T Consensus 3 i~i~G~~~~GKStli~~l~~~ 23 (162)
T cd04123 3 VVLLGEGRVGKTSLVLRYVEN 23 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 347899999999999876654
No 194
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.58 E-value=0.0071 Score=43.56 Aligned_cols=20 Identities=30% Similarity=0.245 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.+....
T Consensus 31 l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 31 LLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 195
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.58 E-value=0.0072 Score=43.80 Aligned_cols=19 Identities=32% Similarity=0.347 Sum_probs=17.2
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|.|..|+|||||++.+.+.
T Consensus 18 i~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 18 ISGPSGVGKDAVLARMRER 36 (206)
T ss_pred EECcCCCCHHHHHHHHHhc
Confidence 8999999999999998753
No 196
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=95.57 E-value=0.0067 Score=45.59 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=14.6
Q ss_pred ccCcCCCchhHHHHhhhh
Q 042811 91 PFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~ 108 (130)
|+|-|||||||++-++--
T Consensus 6 v~gKGGVGKTT~a~nLA~ 23 (273)
T PRK13232 6 IYGKGGIGKSTTTQNLTA 23 (273)
T ss_pred EECCCCCcHHHHHHHHHH
Confidence 459999999998877643
No 197
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=95.57 E-value=0.0071 Score=44.29 Aligned_cols=20 Identities=20% Similarity=0.140 Sum_probs=18.5
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 17 i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 17 LVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 99999999999999998865
No 198
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=95.57 E-value=0.0075 Score=41.11 Aligned_cols=19 Identities=21% Similarity=0.048 Sum_probs=16.3
Q ss_pred ccccCcCCCchhHHHHhhh
Q 042811 89 NWPFGVEGVGKITSLSKSY 107 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~ 107 (130)
+.|+|.+|+|||||+..+.
T Consensus 3 i~vvG~~~~GKtsl~~~l~ 21 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFH 21 (164)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 3478999999999999874
No 199
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.57 E-value=0.0072 Score=43.15 Aligned_cols=20 Identities=25% Similarity=0.192 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|-.|.|||||++.+....
T Consensus 31 l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 31 IKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 99999999999999998754
No 200
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=95.56 E-value=0.0074 Score=41.31 Aligned_cols=21 Identities=29% Similarity=0.154 Sum_probs=17.7
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||++.+.+.
T Consensus 3 v~ivG~~~~GKStl~~~l~~~ 23 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNA 23 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999998743
No 201
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.56 E-value=0.0072 Score=44.27 Aligned_cols=20 Identities=30% Similarity=0.069 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 40 l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 40 IVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 99999999999999998754
No 202
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.56 E-value=0.0072 Score=44.44 Aligned_cols=20 Identities=30% Similarity=0.157 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 33 i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 33 LLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 203
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=95.56 E-value=0.0074 Score=43.48 Aligned_cols=18 Identities=22% Similarity=0.183 Sum_probs=16.8
Q ss_pred ccCcCCCchhHHHHhhhh
Q 042811 91 PFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~ 108 (130)
|+|-.|+|||||++.++.
T Consensus 27 i~G~nGsGKStll~al~~ 44 (197)
T cd03278 27 IVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999999874
No 204
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.55 E-value=0.0074 Score=43.99 Aligned_cols=20 Identities=30% Similarity=0.125 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+..-.
T Consensus 41 i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 41 LIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred EECCCCCCHHHHHHHHHcCC
Confidence 99999999999999998754
No 205
>PRK14527 adenylate kinase; Provisional
Probab=95.55 E-value=0.008 Score=42.81 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=18.8
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
++|.|..|+||||+|+.+.+..
T Consensus 9 i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 9 VIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3499999999999999987654
No 206
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=95.54 E-value=0.0077 Score=40.84 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=16.9
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 3 i~liG~~~~GKSsli~~l~~~ 23 (161)
T cd01861 3 LVFLGDQSVGKTSIITRFMYD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 347899999999999886433
No 207
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.54 E-value=0.011 Score=45.05 Aligned_cols=20 Identities=45% Similarity=0.624 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
++|.+|+||||++.++...+
T Consensus 199 ~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 199 LVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999988766
No 208
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.54 E-value=0.0073 Score=43.66 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 36 i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 36 LLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EECCCCCCHHHHHHHHhCCc
Confidence 99999999999999998754
No 209
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=95.53 E-value=0.0075 Score=44.24 Aligned_cols=20 Identities=30% Similarity=0.184 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|.|||||++.+..-.
T Consensus 16 i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 16 LIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 210
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.53 E-value=0.0073 Score=44.33 Aligned_cols=19 Identities=26% Similarity=0.205 Sum_probs=17.9
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|+|..|.|||||++.+...
T Consensus 31 i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 31 IMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 9999999999999999875
No 211
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.53 E-value=0.0075 Score=43.16 Aligned_cols=20 Identities=30% Similarity=0.091 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 29 i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 29 IIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 99999999999999998754
No 212
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.52 E-value=0.0083 Score=41.42 Aligned_cols=19 Identities=26% Similarity=0.067 Sum_probs=16.5
Q ss_pred cccCcCCCchhHHHHhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~ 108 (130)
.|.|..|+||||+|+.+-+
T Consensus 4 ~i~G~~GSGKstia~~la~ 22 (171)
T TIGR02173 4 TISGPPGSGKTTVAKILAE 22 (171)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3789999999999999854
No 213
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.51 E-value=0.008 Score=48.15 Aligned_cols=20 Identities=30% Similarity=0.293 Sum_probs=19.5
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|||-.|+|||.|++.+.|..
T Consensus 118 i~G~~GlGKTHLl~Aign~~ 137 (408)
T COG0593 118 IYGGVGLGKTHLLQAIGNEA 137 (408)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999987
No 214
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.51 E-value=0.0077 Score=42.03 Aligned_cols=19 Identities=37% Similarity=0.438 Sum_probs=16.1
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+.|+||||++..+...
T Consensus 5 ~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 5 LVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 6899999999998887544
No 215
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.51 E-value=0.007 Score=43.07 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+..-.
T Consensus 30 l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 30 IVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EECCCCChHHHHHHHHHcCC
Confidence 99999999999999998754
No 216
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=95.51 E-value=0.0079 Score=42.88 Aligned_cols=21 Identities=19% Similarity=0.017 Sum_probs=18.2
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|+|.+|+|||||+..+.+..
T Consensus 45 ~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 45 ALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred EEECCCCCCHHHHHHHHhcch
Confidence 489999999999999888753
No 217
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.50 E-value=0.0078 Score=44.18 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 32 i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 32 LLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EECCCCCCHHHHHHHHhCCc
Confidence 99999999999999998654
No 218
>PRK02496 adk adenylate kinase; Provisional
Probab=95.50 E-value=0.0086 Score=42.27 Aligned_cols=21 Identities=24% Similarity=0.067 Sum_probs=17.7
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|.|..|+||||+++.+...
T Consensus 4 i~i~G~pGsGKst~a~~la~~ 24 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEH 24 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 448899999999999988653
No 219
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.50 E-value=0.0032 Score=54.47 Aligned_cols=32 Identities=19% Similarity=0.179 Sum_probs=25.2
Q ss_pred eeecccCCCCcc------------ccCcCCCchhHHHHhhhhhh
Q 042811 79 KLGDVRRNGNNW------------PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 79 ivG~~~~~~~l~------------I~GmGGvGKTTLak~v~~~~ 110 (130)
++|++...+.+. ++|..|+|||+||+.+....
T Consensus 181 ~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 181 VIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred CCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHH
Confidence 588876444332 99999999999999987765
No 220
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.50 E-value=0.0068 Score=49.83 Aligned_cols=20 Identities=30% Similarity=0.202 Sum_probs=18.7
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
++|..|+||||+|+.+.+..
T Consensus 41 f~GppGtGKTTlA~~lA~~l 60 (504)
T PRK14963 41 FSGPRGVGKTTTARLIAMAV 60 (504)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999998876
No 221
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.50 E-value=0.0077 Score=44.07 Aligned_cols=20 Identities=25% Similarity=0.240 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 31 l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 31 LIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred EECCCCCCHHHHHHHHcCCC
Confidence 99999999999999998754
No 222
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.49 E-value=0.017 Score=45.55 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=19.3
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
+|+|..|+|||||+..+....
T Consensus 9 ~i~G~~gsGKTTl~~~l~~~l 29 (369)
T PRK14490 9 AFCGYSGSGKTTLITALVRRL 29 (369)
T ss_pred EEEeCCCCCHHHHHHHHHHHH
Confidence 389999999999999999877
No 223
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=95.49 E-value=0.0081 Score=41.14 Aligned_cols=20 Identities=25% Similarity=0.230 Sum_probs=17.2
Q ss_pred ccccCcCCCchhHHHHhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~ 108 (130)
+.|+|..|+|||||+..+-+
T Consensus 10 v~v~G~~~~GKSsli~~l~~ 29 (169)
T cd04114 10 IVLIGNAGVGKTCLVRRFTQ 29 (169)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 33999999999999999763
No 224
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.49 E-value=0.008 Score=45.18 Aligned_cols=21 Identities=24% Similarity=0.107 Sum_probs=18.3
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
++.|..|+||||||+.+.+..
T Consensus 25 LL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 25 HLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred EEEcCCCCCHHHHHHHHHHHh
Confidence 388999999999999998743
No 225
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.47 E-value=0.008 Score=43.54 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|-.|+|||||++.+..-.
T Consensus 31 i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 31 LLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999987654
No 226
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=95.47 E-value=0.0081 Score=42.26 Aligned_cols=21 Identities=19% Similarity=0.039 Sum_probs=18.7
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 27 v~ivG~~~~GKSsli~~l~~~ 47 (196)
T PRK00454 27 IAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred EEEEcCCCCCHHHHHHHHhCC
Confidence 449999999999999999874
No 227
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.45 E-value=0.0082 Score=43.15 Aligned_cols=20 Identities=25% Similarity=0.089 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 32 l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 32 IEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 228
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=95.45 E-value=0.0086 Score=41.60 Aligned_cols=21 Identities=19% Similarity=0.082 Sum_probs=17.4
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|-.|+|||||++.+.+.
T Consensus 4 v~l~G~~g~GKTtl~~~~~~~ 24 (180)
T cd04137 4 IAVLGSRSVGKSSLTVQFVEG 24 (180)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 448999999999999987543
No 229
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.45 E-value=0.016 Score=45.97 Aligned_cols=20 Identities=35% Similarity=0.431 Sum_probs=18.7
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
++|..|+||||++.++-...
T Consensus 142 lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 142 LMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999998865
No 230
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.45 E-value=0.008 Score=44.05 Aligned_cols=20 Identities=25% Similarity=0.165 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+..-.
T Consensus 33 i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 33 IVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred EECCCCCCHHHHHHHHhcCc
Confidence 99999999999999997653
No 231
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.44 E-value=0.0086 Score=43.04 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 31 i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 31 FLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EECCCCCCHHHHHHHHhCCc
Confidence 99999999999999997653
No 232
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.44 E-value=0.0083 Score=43.78 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|-.|.|||||++.+....
T Consensus 31 l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 31 LLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999997754
No 233
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.43 E-value=0.0085 Score=43.13 Aligned_cols=20 Identities=30% Similarity=0.106 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.+..-.
T Consensus 31 l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 31 IIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 234
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.43 E-value=0.0085 Score=43.56 Aligned_cols=20 Identities=20% Similarity=-0.004 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|-.|.|||||++.+..-.
T Consensus 18 l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 18 ILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred EECCCCCCHHHHHHHHhCCc
Confidence 99999999999999998754
No 235
>PRK04195 replication factor C large subunit; Provisional
Probab=95.43 E-value=0.0083 Score=48.88 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.5
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|+|..|+||||||+.+.+..
T Consensus 42 lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 42 LLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 3499999999999999998865
No 236
>PRK09183 transposase/IS protein; Provisional
Probab=95.43 E-value=0.0082 Score=45.16 Aligned_cols=22 Identities=27% Similarity=0.075 Sum_probs=19.6
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|+|..|+||||||..+.+..
T Consensus 105 v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 105 IVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 4499999999999999998765
No 237
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.42 E-value=0.0086 Score=44.07 Aligned_cols=20 Identities=25% Similarity=0.142 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 33 i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 33 LLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 238
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.42 E-value=0.0095 Score=40.65 Aligned_cols=20 Identities=25% Similarity=0.192 Sum_probs=18.5
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|.-|+|||||+|.+.+..
T Consensus 27 l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 27 LKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred EEcCCCCCHHHHHHHHHHHc
Confidence 89999999999999998865
No 239
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.42 E-value=0.011 Score=45.59 Aligned_cols=35 Identities=20% Similarity=0.062 Sum_probs=26.8
Q ss_pred ccccCcCCCchhHHHHhhhhhhhhccCCCCeEEEEEeC
Q 042811 89 NWPFGVEGVGKITSLSKSYPEFLEDEGIFLIKMHDVVR 126 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~wv~VS 126 (130)
+.|+|-.|+|||+||..+.|..+ ...+. +.+++++
T Consensus 159 l~L~G~~G~GKThLa~Aia~~l~--~~g~~-v~~~~~~ 193 (306)
T PRK08939 159 LYLYGDFGVGKSYLLAAIANELA--KKGVS-STLLHFP 193 (306)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH--HcCCC-EEEEEHH
Confidence 34999999999999999999884 34444 4666554
No 240
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=95.41 E-value=0.009 Score=41.03 Aligned_cols=21 Identities=29% Similarity=0.218 Sum_probs=17.4
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|.+|+|||||+..+.+.
T Consensus 5 i~iiG~~~vGKTsli~~~~~~ 25 (166)
T cd04122 5 YIIIGDMGVGKSCLLHQFTEK 25 (166)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999987544
No 241
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=95.40 E-value=0.0094 Score=40.42 Aligned_cols=19 Identities=26% Similarity=0.212 Sum_probs=15.7
Q ss_pred ccccCcCCCchhHHHHhhh
Q 042811 89 NWPFGVEGVGKITSLSKSY 107 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~ 107 (130)
+.|+|-.|+|||||+..+.
T Consensus 4 i~i~G~~~vGKTsl~~~~~ 22 (163)
T cd04136 4 VVVLGSGGVGKSALTVQFV 22 (163)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3478999999999988744
No 242
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=95.39 E-value=0.0096 Score=48.17 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=18.9
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
++|..|+|||+||+.|.+..
T Consensus 222 L~GPPGTGKT~LAraIA~el 241 (438)
T PTZ00361 222 LYGPPGTGKTLLAKAVANET 241 (438)
T ss_pred EECCCCCCHHHHHHHHHHhh
Confidence 89999999999999999965
No 243
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.39 E-value=0.0089 Score=42.63 Aligned_cols=18 Identities=33% Similarity=0.206 Sum_probs=15.9
Q ss_pred cccCcCCCchhHHHHhhh
Q 042811 90 WPFGVEGVGKITSLSKSY 107 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~ 107 (130)
.|-|..|+||||+++.+-
T Consensus 4 ~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 4 AITGTPGVGKTTVCKLLR 21 (180)
T ss_pred EEeCCCCCchHHHHHHHH
Confidence 478999999999999874
No 244
>PLN02200 adenylate kinase family protein
Probab=95.39 E-value=0.0096 Score=44.17 Aligned_cols=21 Identities=33% Similarity=0.407 Sum_probs=18.3
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|.|+.|+||||+++.+-...
T Consensus 47 ~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 47 FVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 399999999999999987654
No 245
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.38 E-value=0.0088 Score=44.67 Aligned_cols=20 Identities=30% Similarity=0.248 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 32 i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 32 VLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 246
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.38 E-value=0.0097 Score=42.03 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.0
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
+|.|..|+||||||+.+....
T Consensus 22 ~i~G~~GsGKstla~~l~~~l 42 (184)
T TIGR00455 22 WLTGLSGSGKSTIANALEKKL 42 (184)
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 399999999999999998865
No 247
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=95.37 E-value=0.0086 Score=44.76 Aligned_cols=16 Identities=38% Similarity=0.582 Sum_probs=13.3
Q ss_pred ccCcCCCchhHHHHhh
Q 042811 91 PFGVEGVGKITSLSKS 106 (130)
Q Consensus 91 I~GmGGvGKTTLak~v 106 (130)
|.|-||+||||++-++
T Consensus 5 v~gKGGvGKTT~a~nL 20 (267)
T cd02032 5 VYGKGGIGKSTTSSNL 20 (267)
T ss_pred EecCCCCCHHHHHHHH
Confidence 5689999999977664
No 248
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=95.36 E-value=0.0093 Score=41.35 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=17.8
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|.+|+|||||+..+...
T Consensus 17 v~ivG~~~~GKTsL~~~l~~~ 37 (173)
T cd04154 17 ILILGLDNAGKTTILKKLLGE 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHccC
Confidence 349999999999999987654
No 249
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.36 E-value=0.0094 Score=43.91 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 32 i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 32 LIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 99999999999999998754
No 250
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=95.35 E-value=0.0093 Score=44.39 Aligned_cols=24 Identities=29% Similarity=0.136 Sum_probs=20.1
Q ss_pred CCcc-ccCcCCCchhHHHHhhhhhh
Q 042811 87 GNNW-PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 87 ~~l~-I~GmGGvGKTTLak~v~~~~ 110 (130)
.+++ |+|..|.|||||++.+....
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 31 GDVISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344 99999999999999998764
No 251
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.35 E-value=0.0098 Score=42.60 Aligned_cols=20 Identities=30% Similarity=0.233 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+.+..
T Consensus 9 l~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 9 ISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred EECCCCCCHHHHHHHHHhcC
Confidence 89999999999999998765
No 252
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.35 E-value=0.0093 Score=44.63 Aligned_cols=20 Identities=30% Similarity=0.245 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|.|||||++.++.-.
T Consensus 35 iIG~SGaGKSTLLR~lngl~ 54 (258)
T COG3638 35 IIGPSGAGKSTLLRSLNGLV 54 (258)
T ss_pred EECCCCCcHHHHHHHHhccc
Confidence 99999999999999998743
No 253
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.35 E-value=0.0095 Score=41.91 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 33 i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 33 LLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EECCCCCCHHHHHHHHhccC
Confidence 99999999999999998764
No 254
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=95.35 E-value=0.0093 Score=43.85 Aligned_cols=20 Identities=30% Similarity=0.134 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 32 l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 32 IIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 255
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=95.35 E-value=0.0093 Score=43.87 Aligned_cols=20 Identities=25% Similarity=0.296 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 34 l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 34 LLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 256
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.35 E-value=0.019 Score=41.47 Aligned_cols=32 Identities=16% Similarity=-0.071 Sum_probs=22.9
Q ss_pred ccCcCCCchhHHHHhhhhhhhhccCCCCeEEEEEe
Q 042811 91 PFGVEGVGKITSLSKSYPEFLEDEGIFLIKMHDVV 125 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~wv~V 125 (130)
|.|.+|+|||||+..+-.... ... ..++|+..
T Consensus 24 i~G~~GsGKT~l~~~~a~~~~--~~g-~~v~yi~~ 55 (218)
T cd01394 24 VYGPPGTGKTNIAIQLAVETA--GQG-KKVAYIDT 55 (218)
T ss_pred EECCCCCCHHHHHHHHHHHHH--hcC-CeEEEEEC
Confidence 999999999999999876542 122 34566643
No 257
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=95.34 E-value=0.0099 Score=41.02 Aligned_cols=21 Identities=29% Similarity=0.215 Sum_probs=18.1
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+-+.
T Consensus 7 i~vvG~~~vGKSsLl~~l~~~ 27 (168)
T cd01866 7 YIIIGDTGVGKSCLLLQFTDK 27 (168)
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 348999999999999998764
No 258
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=95.34 E-value=0.0093 Score=44.08 Aligned_cols=20 Identities=30% Similarity=0.220 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+..-.
T Consensus 32 i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 32 LIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred EECCCCCCHHHHHHHHhccC
Confidence 99999999999999997643
No 259
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=95.34 E-value=0.0098 Score=42.49 Aligned_cols=20 Identities=30% Similarity=0.250 Sum_probs=17.2
Q ss_pred ccccCcCCCchhHHHHhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~ 108 (130)
+.|+|.+|+|||||+..+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (199)
T cd04110 9 LLIIGDSGVGKSSLLLRFAD 28 (199)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 44999999999999988754
No 260
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.33 E-value=0.0094 Score=47.65 Aligned_cols=20 Identities=35% Similarity=0.320 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.+.+..
T Consensus 224 I~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 224 ILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred EEcCCCCCHHHHHHHHHHHh
Confidence 99999999999999988764
No 261
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.33 E-value=0.0098 Score=43.44 Aligned_cols=20 Identities=30% Similarity=0.212 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.+....
T Consensus 38 i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 38 ITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred EECCCCCCHHHHHHHHhccc
Confidence 99999999999999998754
No 262
>PF13479 AAA_24: AAA domain
Probab=95.32 E-value=0.0083 Score=43.69 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=15.6
Q ss_pred cccCcCCCchhHHHHhh
Q 042811 90 WPFGVEGVGKITSLSKS 106 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v 106 (130)
+|||-.|+||||||..+
T Consensus 7 lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 7 LIYGPPGSGKTTLAASL 23 (213)
T ss_pred EEECCCCCCHHHHHHhC
Confidence 39999999999999986
No 263
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=95.31 E-value=0.0097 Score=43.81 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 52 i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 52 FIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred EECCCCCCHHHHHHHHhCCc
Confidence 99999999999999998754
No 264
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=95.30 E-value=0.01 Score=42.87 Aligned_cols=20 Identities=20% Similarity=0.199 Sum_probs=17.5
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.+.+..
T Consensus 6 i~G~~GsGKTTll~~l~~~l 25 (199)
T TIGR00101 6 VAGPVGSGKTALIEALTRAL 25 (199)
T ss_pred EECCCCCCHHHHHHHHHHhh
Confidence 78999999999999887763
No 265
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.30 E-value=0.01 Score=41.97 Aligned_cols=20 Identities=15% Similarity=0.091 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|-.|.|||||++.+....
T Consensus 31 i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 31 IAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 266
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.29 E-value=0.0098 Score=44.06 Aligned_cols=19 Identities=32% Similarity=0.223 Sum_probs=17.6
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|.|..|.|||||++.+..-
T Consensus 37 i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 37 LIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EECCCCCCHHHHHHHHHhh
Confidence 9999999999999999863
No 267
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.29 E-value=0.012 Score=42.91 Aligned_cols=20 Identities=40% Similarity=0.363 Sum_probs=19.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|.+|.|||||+|.+|...
T Consensus 33 l~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 33 LTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred EECCCCCCHHHHHHHHHhhh
Confidence 99999999999999999977
No 268
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.29 E-value=0.017 Score=47.59 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=19.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
++|..|+|||+||+.+.+..
T Consensus 221 LyGPPGTGKT~LAKAlA~eL 240 (512)
T TIGR03689 221 LYGPPGCGKTLIAKAVANSL 240 (512)
T ss_pred EECCCCCcHHHHHHHHHHhh
Confidence 99999999999999999976
No 269
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.29 E-value=0.0043 Score=53.05 Aligned_cols=32 Identities=19% Similarity=0.150 Sum_probs=25.3
Q ss_pred eeecccCCCCc------------cccCcCCCchhHHHHhhhhhh
Q 042811 79 KLGDVRRNGNN------------WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 79 ivG~~~~~~~l------------~I~GmGGvGKTTLak~v~~~~ 110 (130)
++|++..++.+ .++|..|+||||||+.+.+..
T Consensus 184 ~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 184 LIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred ccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 58887643333 299999999999999998875
No 270
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=95.28 E-value=0.01 Score=41.58 Aligned_cols=21 Identities=19% Similarity=0.039 Sum_probs=18.5
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 21 i~ivG~~~~GKStlin~l~~~ 41 (179)
T TIGR03598 21 IAFAGRSNVGKSSLINALTNR 41 (179)
T ss_pred EEEEcCCCCCHHHHHHHHhCC
Confidence 349999999999999998775
No 271
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.28 E-value=0.01 Score=44.26 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=18.5
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|-.|+|||||++.+....
T Consensus 30 i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 30 ILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998764
No 272
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.27 E-value=0.01 Score=43.86 Aligned_cols=20 Identities=30% Similarity=0.126 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 34 i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 34 IIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 99999999999999987653
No 273
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.27 E-value=0.01 Score=43.97 Aligned_cols=18 Identities=33% Similarity=0.244 Sum_probs=16.9
Q ss_pred ccCcCCCchhHHHHhhhh
Q 042811 91 PFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~ 108 (130)
|+|..|.|||||++.+..
T Consensus 34 i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 34 FIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred EECCCCCCHHHHHHHHhh
Confidence 999999999999999964
No 274
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=95.27 E-value=0.011 Score=40.41 Aligned_cols=21 Identities=33% Similarity=0.284 Sum_probs=17.9
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|-+|+|||||++.+.+.
T Consensus 6 i~vvG~~~~GKSsli~~l~~~ 26 (165)
T cd01868 6 IVLIGDSGVGKSNLLSRFTRN 26 (165)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999998654
No 275
>PRK00698 tmk thymidylate kinase; Validated
Probab=95.27 E-value=0.011 Score=41.98 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|.-|+||||+++.+.+..
T Consensus 8 ieG~~gsGKsT~~~~L~~~l 27 (205)
T PRK00698 8 IEGIDGAGKSTQIELLKELL 27 (205)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 88999999999999998865
No 276
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.26 E-value=0.011 Score=42.86 Aligned_cols=20 Identities=25% Similarity=0.086 Sum_probs=16.7
Q ss_pred ccccCcCCCchhHHHHhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~ 108 (130)
++|.|..|+||||+++.+-.
T Consensus 3 I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45899999999999998643
No 277
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.26 E-value=0.01 Score=43.90 Aligned_cols=20 Identities=30% Similarity=0.227 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|-.|+|||||++.+....
T Consensus 34 i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 34 LMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred EECCCCCCHHHHHHHHhccC
Confidence 99999999999999998754
No 278
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=95.26 E-value=0.011 Score=41.66 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=16.6
Q ss_pred ccccCcCCCchhHHHHhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~ 108 (130)
+.|+|-+|+|||||+..+.+
T Consensus 3 i~vvG~~~vGKSsLi~~~~~ 22 (193)
T cd04118 3 VVMLGKESVGKTSLVERYVH 22 (193)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 34789999999999988653
No 279
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.25 E-value=0.01 Score=44.49 Aligned_cols=20 Identities=30% Similarity=0.122 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|-.|.|||||++.+....
T Consensus 43 I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 43 VVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 99999999999999998754
No 280
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=95.25 E-value=0.011 Score=42.25 Aligned_cols=19 Identities=26% Similarity=0.330 Sum_probs=16.1
Q ss_pred ccccCcCCCchhHHHHhhh
Q 042811 89 NWPFGVEGVGKITSLSKSY 107 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~ 107 (130)
+.|+|..|+|||||++.+-
T Consensus 3 ivivG~~~vGKTsli~~l~ 21 (201)
T cd04107 3 VLVIGDLGVGKTSIIKRYV 21 (201)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3478999999999999754
No 281
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.25 E-value=0.011 Score=41.15 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 31 l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 31 LLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 282
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.24 E-value=0.01 Score=42.26 Aligned_cols=19 Identities=47% Similarity=0.553 Sum_probs=16.5
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|+|..|+||||+.+.+-..
T Consensus 9 itGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 9 ITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred EEcCCCCChHHHHHHHHHH
Confidence 8999999999999876554
No 283
>PRK10908 cell division protein FtsE; Provisional
Probab=95.24 E-value=0.011 Score=42.99 Aligned_cols=20 Identities=30% Similarity=0.117 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|-.|+|||||++.+....
T Consensus 33 i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 33 LTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999997754
No 284
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.24 E-value=0.011 Score=43.22 Aligned_cols=20 Identities=35% Similarity=0.414 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 31 l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 31 VLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 285
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.24 E-value=0.01 Score=43.93 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+..-.
T Consensus 36 l~G~nGsGKSTLl~~l~Gl~ 55 (255)
T PRK11300 36 LIGPNGAGKTTVFNCLTGFY 55 (255)
T ss_pred EECCCCCCHHHHHHHHhCCc
Confidence 99999999999999998754
No 286
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.24 E-value=0.011 Score=42.36 Aligned_cols=20 Identities=30% Similarity=0.215 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 32 l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 32 LKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 99999999999999998764
No 287
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=95.23 E-value=0.011 Score=39.59 Aligned_cols=19 Identities=32% Similarity=0.268 Sum_probs=16.9
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
+.|..|+|||||+..+.+.
T Consensus 8 ~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 8 IVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 7899999999999997654
No 288
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=95.22 E-value=0.01 Score=45.45 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=16.8
Q ss_pred ccccCcCCCchhHHHHhhh
Q 042811 89 NWPFGVEGVGKITSLSKSY 107 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~ 107 (130)
+.|.|+.|+||||+++.+.
T Consensus 9 i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 9 VIVTGLSGAGKSVALRALE 27 (288)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 4499999999999999874
No 289
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=95.22 E-value=0.011 Score=40.82 Aligned_cols=17 Identities=18% Similarity=0.042 Sum_probs=14.8
Q ss_pred cccCcCCCchhHHHHhh
Q 042811 90 WPFGVEGVGKITSLSKS 106 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v 106 (130)
.++|.+|+|||||++..
T Consensus 4 ~vvG~~gvGKTsli~~~ 20 (158)
T cd04103 4 GIVGNLQSGKSALVHRY 20 (158)
T ss_pred EEECCCCCcHHHHHHHH
Confidence 47899999999999864
No 290
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=95.21 E-value=0.011 Score=44.22 Aligned_cols=19 Identities=32% Similarity=0.524 Sum_probs=15.4
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|.|-||+||||++.++-..
T Consensus 7 v~~KGGvGKTT~a~nLA~~ 25 (264)
T PRK13231 7 IYGKGGIGKSTTVSNMAAA 25 (264)
T ss_pred EECCCCCcHHHHHHHHhcc
Confidence 5589999999998886543
No 291
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.21 E-value=0.011 Score=41.40 Aligned_cols=20 Identities=25% Similarity=0.164 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|-.|.|||||++.+....
T Consensus 33 i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 33 IIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred EECCCCCCHHHHHHHHHhcc
Confidence 99999999999999998754
No 292
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=95.21 E-value=0.01 Score=41.77 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=18.2
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|.|..|+|||||++.+.+.
T Consensus 17 ililGl~~sGKTtll~~l~~~ 37 (175)
T PF00025_consen 17 ILILGLDGSGKTTLLNRLKNG 37 (175)
T ss_dssp EEEEESTTSSHHHHHHHHHSS
T ss_pred EEEECCCccchHHHHHHhhhc
Confidence 349999999999999998764
No 293
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=95.21 E-value=0.012 Score=40.73 Aligned_cols=21 Identities=19% Similarity=0.075 Sum_probs=17.4
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.++|-+|+|||||+..+...
T Consensus 5 i~vvG~~~vGKTsli~~~~~~ 25 (170)
T cd04115 5 IIVIGDSNVGKTCLTYRFCAG 25 (170)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 348999999999999987543
No 294
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=95.20 E-value=0.011 Score=44.05 Aligned_cols=20 Identities=30% Similarity=0.263 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|.|||||++.+....
T Consensus 35 i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 35 FIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred EECCCCCCHHHHHHHHhccC
Confidence 99999999999999998754
No 295
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.20 E-value=0.011 Score=41.33 Aligned_cols=20 Identities=25% Similarity=0.306 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|.|||||++.+....
T Consensus 31 i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 31 LLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 296
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=95.20 E-value=0.011 Score=42.66 Aligned_cols=21 Identities=38% Similarity=0.403 Sum_probs=16.8
Q ss_pred cccCcCCCchhHHHH-hhhhhh
Q 042811 90 WPFGVEGVGKITSLS-KSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak-~v~~~~ 110 (130)
.|+|-.|+|||||+. .+.+.+
T Consensus 13 ~liG~~g~GKTtLi~~~~~~~~ 34 (215)
T PTZ00132 13 ILVGDGGVGKTTFVKRHLTGEF 34 (215)
T ss_pred EEECCCCCCHHHHHHHHHhCCC
Confidence 499999999999994 565543
No 297
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=95.20 E-value=0.01 Score=44.55 Aligned_cols=20 Identities=25% Similarity=0.488 Sum_probs=15.6
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|-|||||||++-++---.
T Consensus 7 v~~KGGVGKTT~a~nLA~~L 26 (275)
T PRK13233 7 IYGKGGIGKSTTTQNTAAAM 26 (275)
T ss_pred EEcCCCCcHHHHHHHHHHHH
Confidence 55899999999988765443
No 298
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=95.20 E-value=0.012 Score=41.60 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=18.0
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||++.+...
T Consensus 20 i~ivG~~~~GKTsli~~l~~~ 40 (184)
T smart00178 20 ILFLGLDNAGKTTLLHMLKND 40 (184)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 349999999999999988664
No 299
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=95.19 E-value=0.012 Score=40.74 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=16.2
Q ss_pred ccccCcCCCchhHHHHhhh
Q 042811 89 NWPFGVEGVGKITSLSKSY 107 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~ 107 (130)
+.|+|..|+|||||+..+.
T Consensus 3 i~vvG~~~vGKTsli~~~~ 21 (166)
T cd00877 3 LVLVGDGGTGKTTFVKRHL 21 (166)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3478999999999998863
No 300
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=95.19 E-value=0.011 Score=41.06 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=16.7
Q ss_pred ccccCcCCCchhHHHHhhh
Q 042811 89 NWPFGVEGVGKITSLSKSY 107 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~ 107 (130)
+.|+|.+|+|||||+..+.
T Consensus 12 v~i~G~~~~GKTsli~~l~ 30 (168)
T cd04149 12 ILMLGLDAAGKTTILYKLK 30 (168)
T ss_pred EEEECcCCCCHHHHHHHHc
Confidence 4499999999999998874
No 301
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=95.19 E-value=0.011 Score=40.34 Aligned_cols=21 Identities=24% Similarity=0.109 Sum_probs=17.8
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 3 i~~~G~~~~GKssli~~l~~~ 23 (168)
T cd01897 3 LVIAGYPNVGKSSLVNKLTRA 23 (168)
T ss_pred EEEEcCCCCCHHHHHHHHhcC
Confidence 347899999999999998664
No 302
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=95.18 E-value=0.011 Score=42.86 Aligned_cols=20 Identities=35% Similarity=0.521 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|-.|.|||||++.+....
T Consensus 39 l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 39 LSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998764
No 303
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.18 E-value=0.012 Score=42.04 Aligned_cols=19 Identities=32% Similarity=0.314 Sum_probs=17.7
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|.|-.|.|||||++.+...
T Consensus 38 l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 38 LMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 9999999999999999863
No 304
>PRK04213 GTP-binding protein; Provisional
Probab=95.18 E-value=0.012 Score=41.88 Aligned_cols=21 Identities=24% Similarity=0.102 Sum_probs=18.2
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 12 i~i~G~~~~GKSsLin~l~~~ 32 (201)
T PRK04213 12 IVFVGRSNVGKSTLVRELTGK 32 (201)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 449999999999999998764
No 305
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=95.18 E-value=0.011 Score=41.69 Aligned_cols=20 Identities=30% Similarity=0.245 Sum_probs=17.3
Q ss_pred ccccCcCCCchhHHHHhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~ 108 (130)
+.++|.+|+|||||+..+..
T Consensus 20 v~lvG~~~vGKTsli~~~~~ 39 (182)
T PTZ00133 20 ILMVGLDAAGKTTILYKLKL 39 (182)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 44999999999999999843
No 306
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.18 E-value=0.01 Score=42.89 Aligned_cols=20 Identities=35% Similarity=0.521 Sum_probs=16.5
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
++|..|+||||.+-++....
T Consensus 6 lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 6 LVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred EECCCCCchHhHHHHHHHHH
Confidence 78999999999888775544
No 307
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=95.17 E-value=0.012 Score=40.52 Aligned_cols=18 Identities=28% Similarity=0.152 Sum_probs=15.4
Q ss_pred ccccCcCCCchhHHHHhh
Q 042811 89 NWPFGVEGVGKITSLSKS 106 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v 106 (130)
+.|+|-+|+|||||+..+
T Consensus 3 i~i~G~~~~GKTsl~~~~ 20 (174)
T cd04135 3 CVVVGDGAVGKTCLLMSY 20 (174)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 347899999999999775
No 308
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.17 E-value=0.011 Score=44.27 Aligned_cols=18 Identities=33% Similarity=0.331 Sum_probs=17.1
Q ss_pred ccCcCCCchhHHHHhhhh
Q 042811 91 PFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~ 108 (130)
|.|..|.|||||++.+..
T Consensus 52 i~G~nGsGKSTLl~~l~G 69 (268)
T PRK14248 52 LIGPSGCGKSTFLRSINR 69 (268)
T ss_pred EECCCCCCHHHHHHHHHh
Confidence 999999999999999976
No 309
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=95.17 E-value=0.011 Score=43.93 Aligned_cols=20 Identities=30% Similarity=0.348 Sum_probs=18.6
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 37 i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 37 IVGESGSGKTTLLNALSARL 56 (258)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998864
No 310
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=95.17 E-value=0.011 Score=44.36 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|.|||||++.+....
T Consensus 38 i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 38 IMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 311
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.17 E-value=0.025 Score=41.18 Aligned_cols=35 Identities=14% Similarity=-0.098 Sum_probs=25.0
Q ss_pred ccCcCCCchhHHHHhhhhhhhhccC----CCCeEEEEEeC
Q 042811 91 PFGVEGVGKITSLSKSYPEFLEDEG----IFLIKMHDVVR 126 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~~~~~~----~Fd~~~wv~VS 126 (130)
|+|-.|+|||||+..+.-.. .... .-..++|++-.
T Consensus 24 i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e 62 (235)
T cd01123 24 IFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTE 62 (235)
T ss_pred EECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCC
Confidence 99999999999999985333 1111 13578888755
No 312
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=95.17 E-value=0.011 Score=44.50 Aligned_cols=17 Identities=29% Similarity=0.558 Sum_probs=13.9
Q ss_pred ccCcCCCchhHHHHhhh
Q 042811 91 PFGVEGVGKITSLSKSY 107 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~ 107 (130)
|+|-|||||||++-++-
T Consensus 6 v~~KGGVGKTT~~~nLA 22 (274)
T PRK13235 6 IYGKGGIGKSTTTQNTV 22 (274)
T ss_pred EeCCCCccHHHHHHHHH
Confidence 55899999999877653
No 313
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=95.17 E-value=0.13 Score=42.87 Aligned_cols=104 Identities=15% Similarity=0.168 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHhhh--ccCccCCchhhhHHHHHHHHHHHHHHHHHhccCcccccc------------cCCcc
Q 042811 3 RLHKIQMGLTRVQALETEVDNL--GGYYFMNCKSSYEFGKKLAKKLQVLANLKEEENYEDVAD------------RLSED 68 (130)
Q Consensus 3 ~~~~v~~Wl~~v~~~~~e~edi--~~~~~~~~~~~~~i~k~i~~~~~~i~~l~~~~~~~~~~~------------~~~~~ 68 (130)
...+++.|.++=+++..-=+=| .+.|. -..++++..+...++.+..++-...+.. ..|+|
T Consensus 315 ~~~q~K~~~kqqk~i~~~K~~ia~~g~g~------a~~~rka~s~~K~~~km~~~gL~ek~~~~k~l~~~f~~vg~~p~p 388 (614)
T KOG0927|consen 315 EENQMKAYEKQQKQIAHMKDLIARFGHGS------AKLGRKAQSKEKTLDKMEADGLTEKVVGEKVLSFRFPEVGKIPPP 388 (614)
T ss_pred hHHHHHHHHHHHhHHHHhhHHHHhhcccc------hhhhHHHhhhhhhHHHHhhccccccccCCceEEEEcccccCCCCC
Q ss_pred cccccCCCCceeecccCCCCcc--------------ccCcCCCchhHHHHhhhhhhhhccCC
Q 042811 69 SVDDRPVETTKLGDVRRNGNNW--------------PFGVEGVGKITSLSKSYPEFLEDEGI 116 (130)
Q Consensus 69 ~~~~~~~~~~ivG~~~~~~~l~--------------I~GmGGvGKTTLak~v~~~~~~~~~~ 116 (130)
.+-- +..-+|.+... .+- ++|..|+|||||+|.++.+.....++
T Consensus 389 vi~~---~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~ 446 (614)
T KOG0927|consen 389 VIMV---QNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGM 446 (614)
T ss_pred eEEE---eccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccc
No 314
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.16 E-value=0.012 Score=43.14 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 32 l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 32 IVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred EECCCCCCHHHHHHHHhccc
Confidence 99999999999999998754
No 315
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.16 E-value=0.011 Score=45.33 Aligned_cols=20 Identities=25% Similarity=0.117 Sum_probs=17.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|-.|+||||||+.+-.-.
T Consensus 67 IaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 67 IAGSVAVGKSTTARILQALL 86 (290)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 78999999999998875544
No 316
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.16 E-value=0.011 Score=44.34 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|-.|+|||||++.+....
T Consensus 32 i~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 32 LVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred EECCCCCCHHHHHHHHcCCC
Confidence 99999999999999997754
No 317
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=95.15 E-value=0.011 Score=44.03 Aligned_cols=20 Identities=30% Similarity=0.320 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 44 i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 44 FIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred EECCCCCCHHHHHHHHhccc
Confidence 99999999999999997653
No 318
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=95.15 E-value=0.012 Score=42.61 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=16.1
Q ss_pred ccCcCCCchhHHHHhhh
Q 042811 91 PFGVEGVGKITSLSKSY 107 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~ 107 (130)
|+|..|.|||||+..|+
T Consensus 27 i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 27 IVGQNGAGKTTIIEALK 43 (204)
T ss_pred EECCCCCCHHHHHHHHH
Confidence 99999999999999984
No 319
>PRK06851 hypothetical protein; Provisional
Probab=95.15 E-value=0.021 Score=45.24 Aligned_cols=34 Identities=26% Similarity=0.218 Sum_probs=28.4
Q ss_pred ccCcCCCchhHHHHhhhhhhhhccCCCCeEEEEEeC
Q 042811 91 PFGVEGVGKITSLSKSYPEFLEDEGIFLIKMHDVVR 126 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~wv~VS 126 (130)
|-|..|+|||||++.+.+.. . ...|++-.+.|-+
T Consensus 35 l~G~pGtGKStl~~~i~~~~-~-~~g~~Ve~~~~~~ 68 (367)
T PRK06851 35 LKGGPGTGKSTLMKKIGEEF-L-EKGYDVEFLHCSS 68 (367)
T ss_pred EECCCCCCHHHHHHHHHHHH-H-HcCCeEEEEEcCC
Confidence 99999999999999999987 3 2468877777766
No 320
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.15 E-value=0.012 Score=41.08 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=18.6
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 32 i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 32 ITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 99999999999999998864
No 321
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=95.15 E-value=0.012 Score=42.02 Aligned_cols=20 Identities=30% Similarity=0.268 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 31 i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 31 VTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999997754
No 322
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=95.15 E-value=0.012 Score=41.38 Aligned_cols=21 Identities=29% Similarity=0.260 Sum_probs=17.1
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.++|.+|+|||||+..+.+.
T Consensus 3 i~v~G~~~vGKSsli~~~~~~ 23 (188)
T cd04125 3 VVIIGDYGVGKSSLLKRFTED 23 (188)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999986543
No 323
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=95.14 E-value=0.012 Score=41.08 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=15.3
Q ss_pred ccccCcCCCchhHHHHhh
Q 042811 89 NWPFGVEGVGKITSLSKS 106 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v 106 (130)
+.|+|-.|+|||||+...
T Consensus 5 i~vvG~~~vGKTsL~~~~ 22 (172)
T cd04141 5 IVMLGAGGVGKSAVTMQF 22 (172)
T ss_pred EEEECCCCCcHHHHHHHH
Confidence 348999999999999665
No 324
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.14 E-value=0.012 Score=44.88 Aligned_cols=20 Identities=25% Similarity=0.152 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
++|..|+||||||+.+.+..
T Consensus 48 l~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 48 HSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred eeCcCCCCHHHHHHHHHHHh
Confidence 69999999999999998854
No 325
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=95.14 E-value=0.012 Score=40.81 Aligned_cols=16 Identities=38% Similarity=0.397 Sum_probs=13.3
Q ss_pred cCcCCCchhHHHHhhh
Q 042811 92 FGVEGVGKITSLSKSY 107 (130)
Q Consensus 92 ~GmGGvGKTTLak~v~ 107 (130)
-+.||+||||++-.+-
T Consensus 6 ~~kgG~GKtt~a~~la 21 (179)
T cd02036 6 SGKGGVGKTTTTANLG 21 (179)
T ss_pred eCCCCCCHHHHHHHHH
Confidence 4689999999988763
No 326
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.14 E-value=0.013 Score=41.74 Aligned_cols=21 Identities=29% Similarity=0.194 Sum_probs=17.9
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|.|-.|+|||||++.+..-.
T Consensus 29 ~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 29 LISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred EEECCCCCCHHHHHHHHHhhc
Confidence 399999999999999887643
No 327
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=95.14 E-value=0.012 Score=39.83 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=17.2
Q ss_pred ccccCcCCCchhHHHHhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~ 108 (130)
+.|+|..|+|||||+..+.+
T Consensus 3 v~~vG~~~~GKTsl~~~~~~ 22 (162)
T cd04106 3 VIVVGNGNVGKSSMIQRFVK 22 (162)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 34789999999999998865
No 328
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=95.13 E-value=0.012 Score=43.56 Aligned_cols=18 Identities=33% Similarity=0.326 Sum_probs=17.0
Q ss_pred ccCcCCCchhHHHHhhhh
Q 042811 91 PFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~ 108 (130)
|+|..|.|||||++.+..
T Consensus 36 i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 36 LIGPSGSGKSTLLRSINR 53 (252)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 999999999999999965
No 329
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=95.13 E-value=0.012 Score=46.16 Aligned_cols=20 Identities=25% Similarity=0.162 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|.|||||++.+..-.
T Consensus 36 IiG~sGaGKSTLlr~I~gl~ 55 (343)
T TIGR02314 36 VIGASGAGKSTLIRCVNLLE 55 (343)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 99999999999999998754
No 330
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=95.13 E-value=0.012 Score=42.47 Aligned_cols=20 Identities=30% Similarity=0.225 Sum_probs=18.6
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|-.|.|||||++.+....
T Consensus 29 i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 29 IMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 99999999999999998865
No 331
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.12 E-value=0.012 Score=43.90 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=18.5
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 35 I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 35 LLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 332
>PRK08356 hypothetical protein; Provisional
Probab=95.12 E-value=0.012 Score=42.08 Aligned_cols=17 Identities=24% Similarity=0.040 Sum_probs=15.9
Q ss_pred ccCcCCCchhHHHHhhh
Q 042811 91 PFGVEGVGKITSLSKSY 107 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~ 107 (130)
|.|+.|+||||+|+.+-
T Consensus 10 ~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 10 VVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EECCCCCCHHHHHHHHH
Confidence 89999999999999993
No 333
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=95.12 E-value=0.012 Score=43.55 Aligned_cols=19 Identities=26% Similarity=0.174 Sum_probs=17.8
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|.|..|+|||||++.+...
T Consensus 38 i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 38 IMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred EECCCCCCHHHHHHHHcCC
Confidence 9999999999999999874
No 334
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.12 E-value=0.0039 Score=45.58 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=15.6
Q ss_pred ccCcCCCchhHHHHhhhh
Q 042811 91 PFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~ 108 (130)
++|-.|+|||+||+.+-.
T Consensus 27 l~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 27 LIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp EES-CCCTHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999998754
No 335
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.12 E-value=0.012 Score=43.55 Aligned_cols=19 Identities=32% Similarity=0.305 Sum_probs=17.8
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|+|-.|+|||||++.+...
T Consensus 35 i~G~nGsGKSTLl~~l~Gl 53 (252)
T PRK14256 35 IIGPSGCGKSTVLRSINRM 53 (252)
T ss_pred EECCCCCCHHHHHHHHHhc
Confidence 9999999999999999875
No 336
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=95.12 E-value=0.012 Score=43.59 Aligned_cols=20 Identities=30% Similarity=0.182 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 31 i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 31 LIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 337
>PLN02796 D-glycerate 3-kinase
Probab=95.11 E-value=0.012 Score=46.20 Aligned_cols=20 Identities=25% Similarity=0.130 Sum_probs=18.8
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.+....
T Consensus 105 I~G~sGSGKSTLa~~L~~lL 124 (347)
T PLN02796 105 ISAPQGCGKTTLVFALVYLF 124 (347)
T ss_pred EECCCCCcHHHHHHHHHHHh
Confidence 99999999999999999876
No 338
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.11 E-value=0.012 Score=44.37 Aligned_cols=20 Identities=25% Similarity=0.150 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 38 l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 38 FIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999997753
No 339
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.11 E-value=0.012 Score=43.87 Aligned_cols=20 Identities=25% Similarity=0.182 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|.|||||++.+....
T Consensus 38 l~G~nGsGKSTLlk~l~Gl~ 57 (259)
T PRK14260 38 IIGPSGCGKSTFIKTLNRIS 57 (259)
T ss_pred EECCCCCCHHHHHHHHHhhc
Confidence 99999999999999998743
No 340
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=95.11 E-value=0.012 Score=44.29 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|.|||||++.+....
T Consensus 55 I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 55 IIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred EECCCCCCHHHHHHHHHhhc
Confidence 99999999999999998753
No 341
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.11 E-value=0.012 Score=42.37 Aligned_cols=20 Identities=30% Similarity=0.197 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|-.|.|||||++.+....
T Consensus 33 i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 33 LTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 342
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.11 E-value=0.012 Score=44.68 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 42 l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 42 VIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 99999999999999997754
No 343
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.11 E-value=0.0046 Score=50.69 Aligned_cols=18 Identities=33% Similarity=0.316 Sum_probs=16.5
Q ss_pred ccCcCCCchhHHHHhhhh
Q 042811 91 PFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~ 108 (130)
++|..|+||||+|+.+-+
T Consensus 40 f~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 40 LVGASGVGKTTCARIISL 57 (491)
T ss_pred EECCCCccHHHHHHHHHH
Confidence 999999999999988765
No 344
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=95.10 E-value=0.012 Score=42.84 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|.|||||++.+....
T Consensus 38 l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 38 ILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred EECCCCCCHHHHHHHHhCcc
Confidence 99999999999999998754
No 345
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.10 E-value=0.012 Score=42.27 Aligned_cols=20 Identities=30% Similarity=0.101 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|-.|.|||||++.+....
T Consensus 29 l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 29 IVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 346
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.10 E-value=0.024 Score=45.96 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=19.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|||-.|+|||+|++.+.+..
T Consensus 146 i~G~~G~GKTHLl~Ai~~~l 165 (450)
T PRK14087 146 IYGESGMGKTHLLKAAKNYI 165 (450)
T ss_pred EECCCCCcHHHHHHHHHHHH
Confidence 99999999999999999965
No 347
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=95.10 E-value=0.012 Score=43.72 Aligned_cols=20 Identities=30% Similarity=0.288 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 32 i~G~nGsGKSTLl~~i~G~~ 51 (256)
T TIGR03873 32 LLGPNGSGKSTLLRLLAGAL 51 (256)
T ss_pred EECCCCCCHHHHHHHHcCCC
Confidence 99999999999999998754
No 348
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.09 E-value=0.0049 Score=51.13 Aligned_cols=20 Identities=30% Similarity=0.135 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
++|..|+||||||+.+.+..
T Consensus 43 f~Gp~GvGKTTlAr~lAk~L 62 (546)
T PRK14957 43 FTGTRGVGKTTLGRLLAKCL 62 (546)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 89999999999999987644
No 349
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=95.09 E-value=0.012 Score=44.02 Aligned_cols=18 Identities=33% Similarity=0.250 Sum_probs=17.1
Q ss_pred ccCcCCCchhHHHHhhhh
Q 042811 91 PFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~ 108 (130)
|+|..|.|||||++.+..
T Consensus 41 i~G~nGsGKSTLl~~l~G 58 (264)
T PRK14243 41 FIGPSGCGKSTILRCFNR 58 (264)
T ss_pred EECCCCCCHHHHHHHHHh
Confidence 999999999999999885
No 350
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.09 E-value=0.013 Score=43.31 Aligned_cols=20 Identities=25% Similarity=0.210 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|-.|.|||||++.+....
T Consensus 34 i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 34 IVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 351
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=95.09 E-value=0.012 Score=44.24 Aligned_cols=20 Identities=30% Similarity=0.280 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|.|||||++.+....
T Consensus 38 l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 38 LVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999997753
No 352
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=95.09 E-value=0.012 Score=43.36 Aligned_cols=19 Identities=26% Similarity=0.218 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|+|..|.|||||++.+...
T Consensus 32 i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 32 IMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred EECCCCCCHHHHHHHHcCC
Confidence 9999999999999999886
No 353
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.09 E-value=0.012 Score=43.78 Aligned_cols=19 Identities=26% Similarity=0.228 Sum_probs=17.6
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|.|-.|.|||||++.+...
T Consensus 43 l~G~nGsGKSTLl~~l~G~ 61 (259)
T PRK14274 43 IIGPSGCGKSTFIKTLNLM 61 (259)
T ss_pred EECCCCCCHHHHHHHHHhh
Confidence 9999999999999999764
No 354
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.08 E-value=0.012 Score=44.16 Aligned_cols=19 Identities=32% Similarity=0.305 Sum_probs=17.7
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|+|..|+|||||++.+...
T Consensus 44 l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 44 LIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred EECCCCCCHHHHHHHHhcc
Confidence 9999999999999999764
No 355
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.08 E-value=0.013 Score=44.10 Aligned_cols=20 Identities=30% Similarity=0.280 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.+....
T Consensus 55 l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 55 IMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 99999999999999997754
No 356
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=95.08 E-value=0.012 Score=44.03 Aligned_cols=20 Identities=30% Similarity=0.197 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 42 i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 42 LIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred EECCCCCCHHHHHHHHcCCC
Confidence 99999999999999998754
No 357
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.07 E-value=0.013 Score=41.29 Aligned_cols=20 Identities=30% Similarity=0.297 Sum_probs=18.5
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|-.|.|||||++.+....
T Consensus 30 l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 30 ILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998854
No 358
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.07 E-value=0.013 Score=40.92 Aligned_cols=20 Identities=30% Similarity=0.298 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|-.|.|||||++.+..-.
T Consensus 33 l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 33 IVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EECCCCCCHHHHHHHHHcCC
Confidence 99999999999999998754
No 359
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=95.07 E-value=0.013 Score=40.18 Aligned_cols=19 Identities=32% Similarity=0.310 Sum_probs=15.5
Q ss_pred ccccCcCCCchhHHHHhhh
Q 042811 89 NWPFGVEGVGKITSLSKSY 107 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~ 107 (130)
+.|+|-+|+|||||+..+.
T Consensus 3 i~vvG~~~~GKTsli~~~~ 21 (161)
T cd04117 3 LLLIGDSGVGKTCLLCRFT 21 (161)
T ss_pred EEEECcCCCCHHHHHHHHh
Confidence 3478999999999996653
No 360
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.07 E-value=0.013 Score=45.05 Aligned_cols=20 Identities=30% Similarity=0.315 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.+.+..
T Consensus 137 I~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 137 VVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 99999999999999988754
No 361
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.06 E-value=0.0057 Score=48.67 Aligned_cols=20 Identities=30% Similarity=0.275 Sum_probs=17.7
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
++|..|+||||+|+.+-+..
T Consensus 43 f~Gp~G~GKtt~A~~~a~~l 62 (397)
T PRK14955 43 FSGLRGVGKTTAARVFAKAV 62 (397)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 89999999999999876654
No 362
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.06 E-value=0.013 Score=39.98 Aligned_cols=20 Identities=35% Similarity=0.341 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|-.|.|||||++.+....
T Consensus 31 i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 31 LVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EECCCCCCHHHHHHHHcCCC
Confidence 99999999999999998754
No 363
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.06 E-value=0.012 Score=43.07 Aligned_cols=20 Identities=30% Similarity=0.287 Sum_probs=18.5
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|-.|.|||||++.+....
T Consensus 34 l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 34 LVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred EEeCCCCCHHHHHHHHhccC
Confidence 99999999999999998764
No 364
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=95.06 E-value=0.012 Score=42.62 Aligned_cols=18 Identities=33% Similarity=0.305 Sum_probs=16.5
Q ss_pred cccCcCCCchhHHHHhhh
Q 042811 90 WPFGVEGVGKITSLSKSY 107 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~ 107 (130)
.|+|..|.|||||++.|.
T Consensus 32 ~i~G~NGsGKSTll~~i~ 49 (213)
T cd03279 32 LICGPTGAGKSTILDAIT 49 (213)
T ss_pred EEECCCCCCHHHHHHHhe
Confidence 399999999999999975
No 365
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.06 E-value=0.0056 Score=53.27 Aligned_cols=32 Identities=22% Similarity=0.142 Sum_probs=25.6
Q ss_pred eeecccCCCCcc------------ccCcCCCchhHHHHhhhhhh
Q 042811 79 KLGDVRRNGNNW------------PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 79 ivG~~~~~~~l~------------I~GmGGvGKTTLak~v~~~~ 110 (130)
++|++..+..+. ++|-.|+||||||+.+....
T Consensus 189 ~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 189 VLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred ccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHH
Confidence 588876444332 99999999999999998865
No 366
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=95.06 E-value=0.013 Score=42.37 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=15.4
Q ss_pred cccCcCCCchhHHHHhhh
Q 042811 90 WPFGVEGVGKITSLSKSY 107 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~ 107 (130)
.++|.+|+|||||++...
T Consensus 4 vvlG~~gVGKTSli~r~~ 21 (202)
T cd04120 4 IIIGSRGVGKTSLMRRFT 21 (202)
T ss_pred EEECcCCCCHHHHHHHHH
Confidence 478999999999997753
No 367
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.06 E-value=0.024 Score=43.06 Aligned_cols=20 Identities=40% Similarity=0.592 Sum_probs=17.8
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
++|.+|+||||++.++....
T Consensus 77 l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 77 FVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred EECCCCCcHHHHHHHHHHHH
Confidence 77999999999999987766
No 368
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.05 E-value=0.011 Score=41.65 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=17.9
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..++|||||+..+-...
T Consensus 7 ivG~k~SGKTTLie~lv~~L 26 (161)
T COG1763 7 IVGYKNSGKTTLIEKLVRKL 26 (161)
T ss_pred EEecCCCChhhHHHHHHHHH
Confidence 89999999999999986655
No 369
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.05 E-value=0.013 Score=41.64 Aligned_cols=21 Identities=24% Similarity=0.058 Sum_probs=17.5
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
|.++||-|+||||+.+.+-+.
T Consensus 5 IvLiG~mGaGKSTIGr~LAk~ 25 (172)
T COG0703 5 IVLIGFMGAGKSTIGRALAKA 25 (172)
T ss_pred EEEEcCCCCCHhHHHHHHHHH
Confidence 347999999999999998544
No 370
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.05 E-value=0.013 Score=42.20 Aligned_cols=20 Identities=25% Similarity=0.152 Sum_probs=18.5
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|-.|.|||||++.+....
T Consensus 38 i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 38 VLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred EECCCCCCHHHHHHHhcccC
Confidence 99999999999999998764
No 371
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.05 E-value=0.03 Score=45.14 Aligned_cols=20 Identities=35% Similarity=0.396 Sum_probs=17.7
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
++|..|+||||++.++-...
T Consensus 196 lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 196 LIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999887653
No 372
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=95.04 E-value=0.014 Score=40.52 Aligned_cols=20 Identities=30% Similarity=0.325 Sum_probs=17.1
Q ss_pred ccccCcCCCchhHHHHhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~ 108 (130)
+.|+|..|+|||||+..+.+
T Consensus 7 i~ivG~~~vGKTsli~~~~~ 26 (180)
T cd04127 7 FLALGDSGVGKTSFLYQYTD 26 (180)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 34899999999999988754
No 373
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=95.04 E-value=0.013 Score=44.82 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|.|||||++.+..-.
T Consensus 24 l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 24 FLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 374
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.04 E-value=0.013 Score=43.39 Aligned_cols=18 Identities=33% Similarity=0.342 Sum_probs=17.0
Q ss_pred ccCcCCCchhHHHHhhhh
Q 042811 91 PFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~ 108 (130)
|+|-.|.|||||++.+..
T Consensus 36 l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 36 LIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 999999999999999965
No 375
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=95.04 E-value=0.013 Score=43.56 Aligned_cols=20 Identities=30% Similarity=0.235 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 33 l~G~nGsGKSTLl~~l~Gl~ 52 (255)
T PRK11231 33 LIGPNGCGKSTLLKCFARLL 52 (255)
T ss_pred EECCCCCCHHHHHHHHhCCc
Confidence 99999999999999997753
No 376
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.04 E-value=0.0045 Score=43.70 Aligned_cols=21 Identities=19% Similarity=0.015 Sum_probs=19.3
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
+|+|-.|+||+.+|+.|++..
T Consensus 26 lI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 26 LITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp EEECSTTSSHHHHHHHHHHCS
T ss_pred EEEcCCCCcHHHHHHHHHHhh
Confidence 399999999999999999965
No 377
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.03 E-value=0.013 Score=42.37 Aligned_cols=20 Identities=30% Similarity=0.302 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 32 i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 32 IVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred EECCCCCCHHHHHHHHhccC
Confidence 99999999999999998754
No 378
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.03 E-value=0.013 Score=43.31 Aligned_cols=19 Identities=32% Similarity=0.307 Sum_probs=17.7
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|.|..|.|||||++.+..-
T Consensus 34 i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 34 IIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred EECCCCCCHHHHHHHHhcc
Confidence 9999999999999999863
No 379
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.03 E-value=0.013 Score=42.77 Aligned_cols=20 Identities=25% Similarity=0.215 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 33 i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 33 LVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred EECCCCCCHHHHHHHHhccc
Confidence 99999999999999997654
No 380
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.03 E-value=0.013 Score=42.80 Aligned_cols=20 Identities=30% Similarity=0.293 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.+....
T Consensus 53 i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 53 LIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 381
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.02 E-value=0.015 Score=40.72 Aligned_cols=20 Identities=40% Similarity=0.524 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||+..+....
T Consensus 6 i~G~~gsGKTTli~~L~~~l 25 (159)
T cd03116 6 FVGYSGSGKTTLLEKLIPAL 25 (159)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 88999999999999988765
No 382
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=95.02 E-value=0.013 Score=45.47 Aligned_cols=20 Identities=20% Similarity=0.064 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|-.|.|||||++.|..-.
T Consensus 38 ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 38 LVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred EECCCCCCHHHHHHHHHccC
Confidence 99999999999999998754
No 383
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.02 E-value=0.014 Score=42.30 Aligned_cols=20 Identities=30% Similarity=0.227 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+..-.
T Consensus 35 i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 35 IIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred EECCCCCCHHHHHHHHhcCc
Confidence 99999999999999998754
No 384
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=95.02 E-value=0.014 Score=40.58 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=17.3
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|-+|+|||||+..+.+.
T Consensus 8 ~~vG~~~vGKTsli~~~~~~ 27 (169)
T cd01892 8 FVLGAKGSGKSALLRAFLGR 27 (169)
T ss_pred EEECCCCCcHHHHHHHHhCC
Confidence 38999999999999997653
No 385
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.01 E-value=0.014 Score=46.60 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=18.7
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
++|..|+||||||+.+.+..
T Consensus 184 L~GppGTGKT~LAkalA~~l 203 (398)
T PTZ00454 184 LYGPPGTGKTMLAKAVAHHT 203 (398)
T ss_pred EECCCCCCHHHHHHHHHHhc
Confidence 99999999999999998865
No 386
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.01 E-value=0.033 Score=40.34 Aligned_cols=33 Identities=18% Similarity=-0.144 Sum_probs=23.8
Q ss_pred ccCcCCCchhHHHHhhhhhhhhccCCC------CeEEEEEeC
Q 042811 91 PFGVEGVGKITSLSKSYPEFLEDEGIF------LIKMHDVVR 126 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~~~~~~~F------d~~~wv~VS 126 (130)
|+|-.|+|||||+..+--.. ...- ..++|+...
T Consensus 24 I~G~~GsGKT~l~~~ia~~~---~~~~~~~g~~~~v~yi~~e 62 (226)
T cd01393 24 IFGEFGSGKTQLCLQLAVEA---QLPGELGGLEGKVVYIDTE 62 (226)
T ss_pred EeCCCCCChhHHHHHHHHHh---hcccccCCCcceEEEEecC
Confidence 99999999999999875543 1222 456777655
No 387
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.00 E-value=0.013 Score=43.34 Aligned_cols=20 Identities=30% Similarity=0.290 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|-.|.|||||++.+....
T Consensus 35 l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 35 LMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred EECCCCCCHHHHHHHHhccC
Confidence 99999999999999997753
No 388
>PLN03025 replication factor C subunit; Provisional
Probab=95.00 E-value=0.014 Score=44.91 Aligned_cols=22 Identities=32% Similarity=0.235 Sum_probs=19.1
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.++|..|+||||+|+.+-+..
T Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 37 LILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 3499999999999999988765
No 389
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.00 E-value=0.015 Score=41.81 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.8
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+|.-|..|.||||||..++...
T Consensus 26 iW~TGLSGsGKSTiA~ale~~L 47 (197)
T COG0529 26 IWFTGLSGSGKSTIANALEEKL 47 (197)
T ss_pred EEeecCCCCCHHHHHHHHHHHH
Confidence 4588999999999999999876
No 390
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=95.00 E-value=0.013 Score=42.81 Aligned_cols=20 Identities=30% Similarity=0.248 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 30 l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 30 ILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999987653
No 391
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.00 E-value=0.016 Score=34.38 Aligned_cols=18 Identities=33% Similarity=0.276 Sum_probs=15.5
Q ss_pred cccCcCCCchhHHHHhhh
Q 042811 90 WPFGVEGVGKITSLSKSY 107 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~ 107 (130)
.|.|-.|+|||||+-.+.
T Consensus 27 li~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 27 LITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 399999999999997654
No 392
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.00 E-value=0.014 Score=43.33 Aligned_cols=20 Identities=30% Similarity=0.209 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|-.|+|||||++.+..-.
T Consensus 38 i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 38 LIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred EECCCCCCHHHHHHHHhccc
Confidence 99999999999999998754
No 393
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=94.99 E-value=0.014 Score=40.00 Aligned_cols=22 Identities=23% Similarity=0.154 Sum_probs=17.9
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|+|-.|+|||||+..+-+..
T Consensus 4 i~i~G~~~~GKSsli~~l~~~~ 25 (165)
T cd01865 4 LLIIGNSSVGKTSFLFRYADDS 25 (165)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999975443
No 394
>PHA02518 ParA-like protein; Provisional
Probab=94.99 E-value=0.013 Score=41.88 Aligned_cols=16 Identities=25% Similarity=0.233 Sum_probs=13.0
Q ss_pred CcCCCchhHHHHhhhh
Q 042811 93 GVEGVGKITSLSKSYP 108 (130)
Q Consensus 93 GmGGvGKTTLak~v~~ 108 (130)
.-||+||||++-++--
T Consensus 8 ~KGGvGKTT~a~~la~ 23 (211)
T PHA02518 8 QKGGAGKTTVATNLAS 23 (211)
T ss_pred CCCCCCHHHHHHHHHH
Confidence 4699999999988643
No 395
>PTZ00369 Ras-like protein; Provisional
Probab=94.99 E-value=0.014 Score=41.21 Aligned_cols=21 Identities=24% Similarity=0.118 Sum_probs=17.3
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|-+|+|||||+..+.+.
T Consensus 8 i~iiG~~~~GKTsLi~~~~~~ 28 (189)
T PTZ00369 8 LVVVGGGGVGKSALTIQFIQN 28 (189)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 448999999999999876543
No 396
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=94.99 E-value=0.014 Score=41.17 Aligned_cols=20 Identities=25% Similarity=0.077 Sum_probs=17.3
Q ss_pred CccccCcCCCchhHHHHhhh
Q 042811 88 NNWPFGVEGVGKITSLSKSY 107 (130)
Q Consensus 88 ~l~I~GmGGvGKTTLak~v~ 107 (130)
++.|+|-.|+|||||++.+.
T Consensus 3 Ki~ivG~~g~GKStLl~~l~ 22 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFT 22 (187)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 34589999999999999985
No 397
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.99 E-value=0.014 Score=43.35 Aligned_cols=18 Identities=33% Similarity=0.272 Sum_probs=17.1
Q ss_pred ccCcCCCchhHHHHhhhh
Q 042811 91 PFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~ 108 (130)
|.|-.|+|||||++.+..
T Consensus 37 i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 37 LIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 999999999999999975
No 398
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=94.98 E-value=0.014 Score=43.38 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|-.|.|||||++.+....
T Consensus 34 l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 34 LVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 399
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=94.98 E-value=0.015 Score=39.44 Aligned_cols=20 Identities=25% Similarity=0.109 Sum_probs=16.3
Q ss_pred ccccCcCCCchhHHHHhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~ 108 (130)
+.|+|-+|+|||||+..+-+
T Consensus 5 i~i~G~~~~GKtsl~~~~~~ 24 (164)
T cd04145 5 LVVVGGGGVGKSALTIQFIQ 24 (164)
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 34899999999999987543
No 400
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=94.98 E-value=0.014 Score=43.18 Aligned_cols=19 Identities=32% Similarity=0.274 Sum_probs=17.6
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|+|..|.|||||++.+...
T Consensus 34 i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 34 LIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred EECCCCCCHHHHHHHHhcc
Confidence 9999999999999999763
No 401
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=94.97 E-value=0.0059 Score=51.15 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=17.9
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
++|..|+||||+|+.+-+..
T Consensus 43 f~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 43 FSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 89999999999999987654
No 402
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=94.97 E-value=0.014 Score=41.96 Aligned_cols=17 Identities=24% Similarity=0.163 Sum_probs=15.4
Q ss_pred ccCcCCCchhHHHHhhh
Q 042811 91 PFGVEGVGKITSLSKSY 107 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~ 107 (130)
|+|..|.|||||++.+-
T Consensus 5 ~~g~~~~GKttL~~~l~ 21 (203)
T cd01888 5 TIGHVAHGKSTLVKALS 21 (203)
T ss_pred EECCCCCCHHHHHHHHh
Confidence 78999999999999873
No 403
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.97 E-value=0.014 Score=41.84 Aligned_cols=20 Identities=30% Similarity=0.120 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|-.|.|||||++.+....
T Consensus 31 i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 31 VTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999987754
No 404
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.96 E-value=0.0056 Score=47.89 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=17.1
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|.|..|+|||||++.+.+-
T Consensus 30 i~G~~G~gKttl~r~~~~~ 48 (337)
T TIGR02030 30 VMGDRGTGKSTAVRALAAL 48 (337)
T ss_pred EEcCCCCCHHHHHHHHHHh
Confidence 9999999999999998643
No 405
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=94.96 E-value=0.014 Score=40.60 Aligned_cols=20 Identities=25% Similarity=0.227 Sum_probs=17.4
Q ss_pred ccccCcCCCchhHHHHhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~ 108 (130)
+.++|.+|+|||||+..+..
T Consensus 18 v~~~G~~~~GKTsl~~~l~~ 37 (174)
T cd04153 18 VIIVGLDNAGKTTILYQFLL 37 (174)
T ss_pred EEEECCCCCCHHHHHHHHcc
Confidence 44999999999999999854
No 406
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.95 E-value=0.016 Score=40.85 Aligned_cols=20 Identities=35% Similarity=0.542 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
++|..|||||||+..+..+.
T Consensus 40 l~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 40 LLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp EECSTTSSHHHHHHHHHTSS
T ss_pred EECCCCCCHHHHHHHHHhhc
Confidence 99999999999999998864
No 407
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=94.95 E-value=0.014 Score=42.80 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=16.5
Q ss_pred ccCcCCCchhHHHHhhh
Q 042811 91 PFGVEGVGKITSLSKSY 107 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~ 107 (130)
|+|..|.|||||++.|+
T Consensus 28 i~GpNGsGKStll~ai~ 44 (243)
T cd03272 28 VVGRNGSGKSNFFAAIR 44 (243)
T ss_pred EECCCCCCHHHHHHHHH
Confidence 99999999999999997
No 408
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=94.94 E-value=0.015 Score=40.66 Aligned_cols=21 Identities=24% Similarity=0.077 Sum_probs=17.1
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||++.+.+.
T Consensus 3 i~vvG~~~vGKTsli~~l~~~ 23 (187)
T cd04132 3 IVVVGDGGCGKTCLLIVYSQG 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 347899999999999886543
No 409
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.92 E-value=0.015 Score=42.37 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|-.|.|||||++.+....
T Consensus 34 i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 34 IVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EECCCCCCHHHHHHHHhcCc
Confidence 99999999999999997754
No 410
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=94.92 E-value=0.016 Score=39.57 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=15.8
Q ss_pred cccCcCCCchhHHHHhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~ 108 (130)
.|+|..|+|||||+..+.+
T Consensus 5 ~~~G~~~~GKTsli~~~~~ 23 (164)
T cd04175 5 VVLGSGGVGKSALTVQFVQ 23 (164)
T ss_pred EEECCCCCCHHHHHHHHHh
Confidence 4789999999999877643
No 411
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=94.92 E-value=0.016 Score=39.88 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=17.8
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 6 i~vvG~~~~GKSsl~~~~~~~ 26 (167)
T cd01867 6 LLLIGDSGVGKSCLLLRFSED 26 (167)
T ss_pred EEEECCCCCCHHHHHHHHhhC
Confidence 448999999999999998654
No 412
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.91 E-value=0.015 Score=42.11 Aligned_cols=20 Identities=25% Similarity=0.267 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 35 i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 35 IVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred EECCCCCCHHHHHHHHHcCC
Confidence 99999999999999997653
No 413
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.91 E-value=0.014 Score=46.89 Aligned_cols=20 Identities=45% Similarity=0.584 Sum_probs=18.5
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
++|.+|+||||++.++....
T Consensus 246 LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 246 LIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred EECCCCCcHHHHHHHHHHHH
Confidence 99999999999999998766
No 414
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=94.90 E-value=0.015 Score=43.14 Aligned_cols=18 Identities=28% Similarity=0.276 Sum_probs=16.8
Q ss_pred ccCcCCCchhHHHHhhhh
Q 042811 91 PFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~ 108 (130)
|+|-.|.|||||+..|+-
T Consensus 30 IvG~NGsGKStll~Ai~~ 47 (251)
T cd03273 30 ITGLNGSGKSNILDAICF 47 (251)
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999999974
No 415
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.90 E-value=0.016 Score=44.38 Aligned_cols=22 Identities=23% Similarity=0.219 Sum_probs=19.2
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.++|-.|+||||||+.+.+..
T Consensus 39 lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 39 LLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3499999999999999988765
No 416
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=94.90 E-value=0.017 Score=45.64 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=18.9
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
++|..|+||||||+.+-+..
T Consensus 83 L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 83 LLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999998876
No 417
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=94.89 E-value=0.015 Score=40.19 Aligned_cols=23 Identities=22% Similarity=0.210 Sum_probs=19.6
Q ss_pred CccccCcCCCchhHHHHhhhhhh
Q 042811 88 NNWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 88 ~l~I~GmGGvGKTTLak~v~~~~ 110 (130)
++.++|..|+|||||+..+++..
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~ 25 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY 25 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 45589999999999999998764
No 418
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.89 E-value=0.032 Score=40.30 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
++|..|+|||||++.+....
T Consensus 27 ~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 27 FMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 89999999999999988764
No 419
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=94.88 E-value=0.015 Score=43.62 Aligned_cols=20 Identities=40% Similarity=0.360 Sum_probs=18.5
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|.|||||++.+..+.
T Consensus 62 I~G~NGsGKTTLL~ll~~~~ 81 (257)
T COG1119 62 IVGPNGAGKTTLLSLLTGEH 81 (257)
T ss_pred EECCCCCCHHHHHHHHhccc
Confidence 99999999999999997765
No 420
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=94.88 E-value=0.016 Score=43.50 Aligned_cols=20 Identities=30% Similarity=0.136 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|-.|.|||||++.+....
T Consensus 50 i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 50 FIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred EECCCCCCHHHHHHHHHhhc
Confidence 99999999999999998743
No 421
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=94.87 E-value=0.015 Score=47.83 Aligned_cols=19 Identities=32% Similarity=0.337 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
+||..|+|||||++.|-+-
T Consensus 111 LvGrNG~GKsTLLRaia~~ 129 (582)
T KOG0062|consen 111 LVGRNGIGKSTLLRAIANG 129 (582)
T ss_pred eeCCCCCcHHHHHHHHHhc
Confidence 9999999999999999983
No 422
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=94.87 E-value=0.015 Score=45.41 Aligned_cols=20 Identities=25% Similarity=0.149 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|.|||||++.+..-.
T Consensus 36 iiG~nGsGKSTLlk~L~Gl~ 55 (343)
T PRK11153 36 VIGASGAGKSTLIRCINLLE 55 (343)
T ss_pred EECCCCCcHHHHHHHHhCCC
Confidence 99999999999999997754
No 423
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=94.87 E-value=0.015 Score=43.36 Aligned_cols=20 Identities=35% Similarity=0.395 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|-.|.|||||++.+....
T Consensus 33 i~G~nGsGKSTLl~~i~G~~ 52 (258)
T PRK13548 33 ILGPNGAGKSTLLRALSGEL 52 (258)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 424
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.87 E-value=0.015 Score=43.00 Aligned_cols=19 Identities=32% Similarity=0.223 Sum_probs=17.8
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|.|..|.|||||++.+...
T Consensus 35 i~G~nGsGKSTLl~~l~G~ 53 (251)
T PRK14270 35 LIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred EECCCCCCHHHHHHHHHhc
Confidence 9999999999999999874
No 425
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=94.87 E-value=0.016 Score=39.28 Aligned_cols=20 Identities=25% Similarity=0.207 Sum_probs=17.3
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|..|+|||||+..+.+.
T Consensus 6 ~i~G~~~~GKstli~~l~~~ 25 (174)
T cd01895 6 AIIGRPNVGKSSLVNALLGE 25 (174)
T ss_pred EEEcCCCCCHHHHHHHHhCc
Confidence 38999999999999998654
No 426
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=94.86 E-value=0.015 Score=43.91 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|.|||||++.+....
T Consensus 32 l~G~nGsGKSTLl~~laG~~ 51 (272)
T PRK13547 32 LLGRNGAGKSTLLKALAGDL 51 (272)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999997754
No 427
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.86 E-value=0.015 Score=41.52 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=14.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+||||++..+-...
T Consensus 22 i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 22 IQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EE-STTSSHHHHHHHHHHHH
T ss_pred EECCCCCChHHHHHHHHHHh
Confidence 99999999997666654433
No 428
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.85 E-value=0.016 Score=42.05 Aligned_cols=20 Identities=30% Similarity=0.200 Sum_probs=18.5
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|-.|.|||||++.+....
T Consensus 42 i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 42 VQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred EEcCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 429
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.84 E-value=0.029 Score=40.35 Aligned_cols=20 Identities=30% Similarity=0.285 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|.+|+||||+++.+.+-.
T Consensus 23 l~G~aGtGKT~~l~~~~~~~ 42 (196)
T PF13604_consen 23 LQGPAGTGKTTLLKALAEAL 42 (196)
T ss_dssp EEESTTSTHHHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHH
Confidence 78999999999999988766
No 430
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=94.84 E-value=0.016 Score=43.39 Aligned_cols=20 Identities=25% Similarity=0.096 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 42 i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T TIGR02769 42 LLGRSGCGKSTLARLLLGLE 61 (265)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999988754
No 431
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.84 E-value=0.016 Score=43.70 Aligned_cols=19 Identities=32% Similarity=0.197 Sum_probs=17.6
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|.|..|.|||||++.+...
T Consensus 51 IiG~nGsGKSTLl~~l~Gl 69 (274)
T PRK14265 51 FIGPSGCGKSTLLRCFNRM 69 (274)
T ss_pred EECCCCCCHHHHHHHHhcc
Confidence 9999999999999999854
No 432
>PRK14528 adenylate kinase; Provisional
Probab=94.84 E-value=0.018 Score=41.06 Aligned_cols=21 Identities=29% Similarity=0.156 Sum_probs=17.9
Q ss_pred CccccCcCCCchhHHHHhhhh
Q 042811 88 NNWPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 88 ~l~I~GmGGvGKTTLak~v~~ 108 (130)
.++|.|..|+||||+++.+..
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~ 23 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCE 23 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999864
No 433
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=94.83 E-value=0.017 Score=40.24 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=17.4
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.++|-+|+|||||++.+.+.
T Consensus 3 i~ivG~~~vGKTsli~~~~~~ 23 (170)
T cd04108 3 VIVVGDLSVGKTCLINRFCKD 23 (170)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 447999999999999986554
No 434
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.83 E-value=0.0057 Score=48.10 Aligned_cols=20 Identities=25% Similarity=0.321 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|-.|+||||+|+.+++-.
T Consensus 43 i~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 43 IMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred EEcCCCCCHHHHHHHHHHHH
Confidence 99999999999999997765
No 435
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=94.83 E-value=0.017 Score=43.39 Aligned_cols=20 Identities=30% Similarity=0.207 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|-.|.|||||++.+....
T Consensus 51 I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 51 LIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred EECCCCCCHHHHHHHHHhcc
Confidence 99999999999999998754
No 436
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.83 E-value=0.017 Score=42.77 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=17.6
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|.|..|.|||||++.+...
T Consensus 34 i~G~nGsGKSTLl~~l~Gl 52 (250)
T PRK14266 34 LIGPSGCGKSTFIRTLNRM 52 (250)
T ss_pred EECCCCCCHHHHHHHHHhh
Confidence 9999999999999999853
No 437
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.82 E-value=0.017 Score=41.52 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=16.8
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+||||+++.+....
T Consensus 6 I~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 6 VTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 88999999999999765444
No 438
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.82 E-value=0.018 Score=40.77 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=18.8
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|-|.-|+||||+++.+.+..
T Consensus 8 ieG~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 8 IEGIDGAGKTTQANLLKKLL 27 (195)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 88999999999999999877
No 439
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.81 E-value=0.016 Score=43.67 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|.|||||+|.+-.-.
T Consensus 35 iiGPNGaGKSTLlK~iLGll 54 (254)
T COG1121 35 LIGPNGAGKSTLLKAILGLL 54 (254)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999987743
No 440
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=94.81 E-value=0.016 Score=39.92 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
++|+.|+||+||...+..+.
T Consensus 107 ~~G~~nvGKStliN~l~~~~ 126 (157)
T cd01858 107 FIGYPNVGKSSIINTLRSKK 126 (157)
T ss_pred EEeCCCCChHHHHHHHhcCC
Confidence 99999999999999997754
No 441
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.81 E-value=0.016 Score=43.61 Aligned_cols=20 Identities=25% Similarity=0.233 Sum_probs=18.5
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 55 liG~NGsGKSTLlk~L~Gl~ 74 (264)
T PRK13546 55 LVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred EECCCCCCHHHHHHHHhCCc
Confidence 99999999999999998864
No 442
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.81 E-value=0.017 Score=41.54 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+..-.
T Consensus 39 i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 39 IVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred EECCCCCCHHHHHHHHhccc
Confidence 99999999999999997643
No 443
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=94.80 E-value=0.017 Score=42.01 Aligned_cols=20 Identities=25% Similarity=0.238 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|-.|.|||||++.+....
T Consensus 45 i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 45 LVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred EECCCCCCHHHHHHHHhcCc
Confidence 99999999999999998754
No 444
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.80 E-value=0.017 Score=41.12 Aligned_cols=35 Identities=14% Similarity=0.071 Sum_probs=25.6
Q ss_pred ccccCcCCCchhHHHHhhhhhhhhccCCCCeEEEEEeC
Q 042811 89 NWPFGVEGVGKITSLSKSYPEFLEDEGIFLIKMHDVVR 126 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~wv~VS 126 (130)
+.++|..|+|||.||..+-+..++ +... +.++.++
T Consensus 50 l~l~G~~G~GKThLa~ai~~~~~~--~g~~-v~f~~~~ 84 (178)
T PF01695_consen 50 LILYGPPGTGKTHLAVAIANEAIR--KGYS-VLFITAS 84 (178)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH--TT---EEEEEHH
T ss_pred EEEEhhHhHHHHHHHHHHHHHhcc--CCcc-eeEeecC
Confidence 449999999999999999998743 4444 4666543
No 445
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=94.80 E-value=0.017 Score=39.74 Aligned_cols=22 Identities=18% Similarity=0.012 Sum_probs=18.4
Q ss_pred CccccCcCCCchhHHHHhhhhh
Q 042811 88 NNWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 88 ~l~I~GmGGvGKTTLak~v~~~ 109 (130)
++.|+|-.|+|||||+..+.+.
T Consensus 3 ki~iiG~~~~GKTsl~~~~~~~ 24 (175)
T cd01870 3 KLVIVGDGACGKTCLLIVFSKD 24 (175)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999998764
No 446
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.80 E-value=0.017 Score=43.48 Aligned_cols=20 Identities=25% Similarity=0.147 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|-.|+|||||++.+..-.
T Consensus 40 l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 40 ILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 99999999999999998754
No 447
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=94.79 E-value=0.017 Score=42.83 Aligned_cols=20 Identities=30% Similarity=0.243 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|-.|.|||||++.+....
T Consensus 34 i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 34 IVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999987764
No 448
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.79 E-value=0.017 Score=42.45 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 33 l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 33 IIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 449
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.79 E-value=0.017 Score=43.72 Aligned_cols=20 Identities=25% Similarity=0.235 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|-.|.|||||++.+..-.
T Consensus 38 i~G~nGsGKSTLl~~l~Gl~ 57 (279)
T PRK13650 38 IIGHNGSGKSTTVRLIDGLL 57 (279)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 99999999999999998754
No 450
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=94.79 E-value=0.016 Score=43.18 Aligned_cols=20 Identities=30% Similarity=0.263 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|.|||||++.+....
T Consensus 35 i~G~nGsGKSTLl~~i~G~~ 54 (262)
T PRK09984 35 LLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred EECCCCCCHHHHHHHHhccC
Confidence 99999999999999998754
No 451
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=94.79 E-value=0.016 Score=43.35 Aligned_cols=20 Identities=30% Similarity=0.283 Sum_probs=18.5
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|-.|.|||||++.+....
T Consensus 38 i~G~nGsGKSTLl~~i~G~~ 57 (265)
T PRK10253 38 IIGPNGCGKSTLLRTLSRLM 57 (265)
T ss_pred EECCCCCCHHHHHHHHcCCC
Confidence 99999999999999998764
No 452
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.77 E-value=0.017 Score=42.73 Aligned_cols=19 Identities=32% Similarity=0.184 Sum_probs=17.6
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|.|..|.|||||++.+...
T Consensus 36 I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 36 FIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred EECCCCCCHHHHHHHHHhh
Confidence 9999999999999999764
No 453
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.77 E-value=0.017 Score=42.74 Aligned_cols=20 Identities=30% Similarity=0.160 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|-.|.|||||++.+....
T Consensus 35 i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 35 LIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred EECCCCCCHHHHHHHHhhcc
Confidence 99999999999999998754
No 454
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=94.77 E-value=0.017 Score=43.25 Aligned_cols=20 Identities=35% Similarity=0.556 Sum_probs=15.7
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|-|||||||++-++-.-.
T Consensus 7 v~~KGGVGKTT~~~nLA~~l 26 (270)
T PRK13185 7 VYGKGGIGKSTTSSNLSAAF 26 (270)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 55899999999887765544
No 455
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=94.76 E-value=0.019 Score=46.92 Aligned_cols=21 Identities=24% Similarity=0.142 Sum_probs=19.0
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.++|..|+||||||+.+.+..
T Consensus 92 LL~GppGtGKT~la~alA~~~ 112 (495)
T TIGR01241 92 LLVGPPGTGKTLLAKAVAGEA 112 (495)
T ss_pred EEECCCCCCHHHHHHHHHHHc
Confidence 399999999999999998865
No 456
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=94.76 E-value=0.018 Score=44.40 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+||.|+||||+++.+....
T Consensus 138 l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 138 LIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred EECCCCCCHHHHHHHHHHHc
Confidence 99999999999999987653
No 457
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=94.75 E-value=0.017 Score=42.33 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 36 i~G~nGsGKSTLl~~l~G~~ 55 (237)
T PRK11614 36 LIGANGAGKTTLLGTLCGDP 55 (237)
T ss_pred EECCCCCCHHHHHHHHcCCC
Confidence 99999999999999997654
No 458
>PRK14974 cell division protein FtsY; Provisional
Probab=94.75 E-value=0.025 Score=44.26 Aligned_cols=20 Identities=35% Similarity=0.434 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
++|+.|+||||++.++....
T Consensus 145 ~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 145 FVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred EEcCCCCCHHHHHHHHHHHH
Confidence 99999999999888888766
No 459
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.74 E-value=0.017 Score=43.61 Aligned_cols=20 Identities=30% Similarity=0.217 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 52 I~G~nGsGKSTLl~~l~Gl~ 71 (276)
T PRK14271 52 LMGPTGSGKTTFLRTLNRMN 71 (276)
T ss_pred EECCCCCCHHHHHHHHhccC
Confidence 99999999999999998754
No 460
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=94.74 E-value=0.017 Score=45.65 Aligned_cols=20 Identities=30% Similarity=0.109 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.+..-.
T Consensus 34 l~G~nGsGKSTLL~~iaGl~ 53 (369)
T PRK11000 34 FVGPSGCGKSTLLRMIAGLE 53 (369)
T ss_pred EECCCCCcHHHHHHHHhCCC
Confidence 99999999999999998754
No 461
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.74 E-value=0.032 Score=46.34 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|.+|+||||++.++...+
T Consensus 355 LVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 355 LVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999987765
No 462
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.73 E-value=0.016 Score=43.96 Aligned_cols=20 Identities=25% Similarity=0.018 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|-.|+|||||++.|-.-.
T Consensus 44 lVGESG~GKSTlgr~i~~L~ 63 (268)
T COG4608 44 LVGESGCGKSTLGRLILGLE 63 (268)
T ss_pred EEecCCCCHHHHHHHHHcCc
Confidence 99999999999999987754
No 463
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.73 E-value=0.033 Score=43.54 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+||||+++.+.+..
T Consensus 127 i~G~tGSGKTT~l~al~~~i 146 (343)
T TIGR01420 127 VTGPTGSGKSTTLASMIDYI 146 (343)
T ss_pred EECCCCCCHHHHHHHHHHhh
Confidence 99999999999999987754
No 464
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.73 E-value=0.017 Score=47.33 Aligned_cols=20 Identities=30% Similarity=0.210 Sum_probs=17.9
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|.|||||++.+..-.
T Consensus 366 IvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 366 ILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 99999999999999986544
No 465
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=94.72 E-value=0.018 Score=40.69 Aligned_cols=19 Identities=21% Similarity=0.106 Sum_probs=16.2
Q ss_pred ccccCcCCCchhHHHHhhh
Q 042811 89 NWPFGVEGVGKITSLSKSY 107 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~ 107 (130)
+.|+|-+|+|||||++.+.
T Consensus 3 ivivG~~~vGKTsli~~~~ 21 (189)
T cd04134 3 VVVLGDGACGKTSLLNVFT 21 (189)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4478999999999998864
No 466
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.72 E-value=0.018 Score=43.22 Aligned_cols=20 Identities=25% Similarity=0.066 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+..-.
T Consensus 40 I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 40 IVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 99999999999999998754
No 467
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.72 E-value=0.018 Score=43.15 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|-.|.|||||++.+..-.
T Consensus 31 IvG~nGsGKSTLlk~l~Gl~ 50 (255)
T cd03236 31 LVGPNGIGKSTALKILAGKL 50 (255)
T ss_pred EECCCCCCHHHHHHHHhCCc
Confidence 99999999999999987765
No 468
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.72 E-value=0.017 Score=46.56 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=18.0
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.++|.+|+||||++.++-...
T Consensus 225 ~~vGptGvGKTTt~~kLA~~~ 245 (424)
T PRK05703 225 ALVGPTGVGKTTTLAKLAARY 245 (424)
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 399999999999998886655
No 469
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.71 E-value=0.014 Score=50.33 Aligned_cols=20 Identities=25% Similarity=0.180 Sum_probs=18.6
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
++|-.|+|||+||+.+....
T Consensus 212 LvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 212 LVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999998765
No 470
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=94.71 E-value=0.018 Score=42.02 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 11 l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 11 LLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 89999999999999998754
No 471
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.71 E-value=0.019 Score=39.44 Aligned_cols=20 Identities=30% Similarity=0.243 Sum_probs=18.5
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|-.|.|||||++.+....
T Consensus 30 i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 30 LVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998854
No 472
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=94.71 E-value=0.017 Score=45.22 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.+..-.
T Consensus 29 l~G~nGsGKSTLl~~iaGl~ 48 (352)
T PRK11144 29 IFGRSGAGKTSLINAISGLT 48 (352)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 473
>PRK13236 nitrogenase reductase; Reviewed
Probab=94.70 E-value=0.017 Score=44.14 Aligned_cols=20 Identities=25% Similarity=0.491 Sum_probs=16.5
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|-|||||||++-.+---.
T Consensus 11 ~~GKGGVGKTt~a~NLA~~L 30 (296)
T PRK13236 11 FYGKGGIGKSTTSQNTLAAM 30 (296)
T ss_pred EECCCcCCHHHHHHHHHHHH
Confidence 89999999999887765544
No 474
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=94.70 E-value=0.017 Score=44.86 Aligned_cols=24 Identities=25% Similarity=0.154 Sum_probs=19.9
Q ss_pred CCcc-ccCcCCCchhHHHHhhhhhh
Q 042811 87 GNNW-PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 87 ~~l~-I~GmGGvGKTTLak~v~~~~ 110 (130)
.++. |+|-.|+|||||++.+..-.
T Consensus 33 Ge~~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 33 GEVVGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3444 99999999999999998754
No 475
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.70 E-value=0.0078 Score=52.41 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=25.3
Q ss_pred eeecccCCCCc------------cccCcCCCchhHHHHhhhhhh
Q 042811 79 KLGDVRRNGNN------------WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 79 ivG~~~~~~~l------------~I~GmGGvGKTTLak~v~~~~ 110 (130)
++|++..+..+ +++|-.|+||||||+.+-...
T Consensus 180 vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 180 VIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 58887643332 299999999999999988865
No 476
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=94.70 E-value=0.018 Score=41.80 Aligned_cols=20 Identities=30% Similarity=0.288 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|-.|.|||||++.+....
T Consensus 31 i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 31 LLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 477
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.69 E-value=0.018 Score=43.69 Aligned_cols=21 Identities=19% Similarity=0.099 Sum_probs=16.6
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
+|+|..|+||||+|+.+-..+
T Consensus 5 il~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 5 ILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp EEE--TTSSHHHHHHHHHHHH
T ss_pred EEEcCCCCcHHHHHHHHHHHH
Confidence 389999999999999998765
No 478
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.69 E-value=0.019 Score=42.46 Aligned_cols=19 Identities=32% Similarity=0.244 Sum_probs=17.8
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|+|-.|.|||||++.+...
T Consensus 33 i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 33 LIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred EECCCCCCHHHHHHHHhcc
Confidence 9999999999999999874
No 479
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=94.68 E-value=0.019 Score=42.74 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=20.4
Q ss_pred CCcc-ccCcCCCchhHHHHhhhhhh
Q 042811 87 GNNW-PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 87 ~~l~-I~GmGGvGKTTLak~v~~~~ 110 (130)
.++. +.|..|+|||||++.|..-.
T Consensus 29 Geiv~llG~NGaGKTTlLkti~Gl~ 53 (237)
T COG0410 29 GEIVALLGRNGAGKTTLLKTIMGLV 53 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444 99999999999999998865
No 480
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.68 E-value=0.018 Score=44.73 Aligned_cols=21 Identities=38% Similarity=0.620 Sum_probs=19.0
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.++|..|+||||++.++....
T Consensus 118 ~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 118 LVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred EEECCCCCcHHHHHHHHHHHH
Confidence 389999999999999998876
No 481
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=94.68 E-value=0.022 Score=47.20 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=20.7
Q ss_pred CCCccccCcCCCchhHHHHhhhhhh
Q 042811 86 NGNNWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 86 ~~~l~I~GmGGvGKTTLak~v~~~~ 110 (130)
...+.++||.|+||||+.+.+-+..
T Consensus 6 ~~~i~LiG~~GaGKttvg~~LA~~L 30 (542)
T PRK14021 6 RPQAVIIGMMGAGKTRVGKEVAQMM 30 (542)
T ss_pred CccEEEECCCCCCHHHHHHHHHHHh
Confidence 3445599999999999999998765
No 482
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=94.67 E-value=0.018 Score=47.71 Aligned_cols=20 Identities=25% Similarity=0.111 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|-.|+||||||+.+-.-.
T Consensus 322 lVGeSGsGKSTlar~i~gL~ 341 (539)
T COG1123 322 LVGESGSGKSTLARILAGLL 341 (539)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999987644
No 483
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=94.67 E-value=0.019 Score=40.21 Aligned_cols=15 Identities=33% Similarity=0.355 Sum_probs=12.9
Q ss_pred cCcCCCchhHHHHhh
Q 042811 92 FGVEGVGKITSLSKS 106 (130)
Q Consensus 92 ~GmGGvGKTTLak~v 106 (130)
-|-||+||||++-++
T Consensus 6 s~kgG~GKSt~a~nL 20 (179)
T cd03110 6 SGKGGTGKTTVTAAL 20 (179)
T ss_pred cCCCCCCHHHHHHHH
Confidence 478999999998775
No 484
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=94.67 E-value=0.019 Score=41.91 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=16.0
Q ss_pred ccCcCCCchhHHHHhhh
Q 042811 91 PFGVEGVGKITSLSKSY 107 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~ 107 (130)
|+|..|.|||||.+.|.
T Consensus 30 ivGpNGaGKSTll~~i~ 46 (212)
T cd03274 30 IVGPNGSGKSNVIDSML 46 (212)
T ss_pred EECCCCCCHHHHHHHHH
Confidence 99999999999999975
No 485
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=94.66 E-value=0.019 Score=42.66 Aligned_cols=19 Identities=32% Similarity=0.324 Sum_probs=17.4
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|+|-.|.|||||++.+..-
T Consensus 27 l~G~nGsGKSTLl~~l~Gl 45 (248)
T PRK03695 27 LVGPNGAGKSTLLARMAGL 45 (248)
T ss_pred EECCCCCCHHHHHHHHcCC
Confidence 9999999999999998764
No 486
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=94.66 E-value=0.018 Score=45.10 Aligned_cols=20 Identities=30% Similarity=0.240 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 28 l~G~nGsGKSTLl~~iaGl~ 47 (354)
T TIGR02142 28 IFGRSGSGKTTLIRLIAGLT 47 (354)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999997754
No 487
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.64 E-value=0.019 Score=41.02 Aligned_cols=19 Identities=32% Similarity=0.319 Sum_probs=17.6
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|.|..|.|||||++.+..-
T Consensus 40 l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 40 IMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 9999999999999998774
No 488
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.63 E-value=0.019 Score=43.63 Aligned_cols=19 Identities=32% Similarity=0.265 Sum_probs=17.7
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|+|..|.|||||++.+..-
T Consensus 70 l~G~nGsGKSTLl~~L~Gl 88 (286)
T PRK14275 70 IIGPSGCGKSTFLRAINRM 88 (286)
T ss_pred EECCCCCCHHHHHHHHhcc
Confidence 9999999999999999873
No 489
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=94.63 E-value=0.02 Score=44.15 Aligned_cols=20 Identities=25% Similarity=0.175 Sum_probs=18.8
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+||||||+.+....
T Consensus 97 I~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 97 IGGASGVGTSTIAFELASRL 116 (301)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 99999999999999998876
No 490
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=94.63 E-value=0.019 Score=43.93 Aligned_cols=20 Identities=25% Similarity=0.223 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+....
T Consensus 35 l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 35 LLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999997754
No 491
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=94.63 E-value=0.021 Score=40.50 Aligned_cols=20 Identities=40% Similarity=0.393 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+....
T Consensus 7 l~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 7 LSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EECCCCCCHHHHHHHHHhcC
Confidence 89999999999999997763
No 492
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=94.63 E-value=0.02 Score=39.26 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=16.8
Q ss_pred ccccCcCCCchhHHHHhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~ 108 (130)
+.++|-.|+|||||+..+-+
T Consensus 8 i~vvG~~~~GKTsli~~~~~ 27 (170)
T cd04116 8 VILLGDGGVGKSSLMNRYVT 27 (170)
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 34899999999999988744
No 493
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=94.62 E-value=0.013 Score=44.94 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=25.6
Q ss_pred ccCcCCCchhHHHHhhhhhhhh---ccCCCCeEEEEE
Q 042811 91 PFGVEGVGKITSLSKSYPEFLE---DEGIFLIKMHDV 124 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~~~---~~~~Fd~~~wv~ 124 (130)
++|..|+||||||+.+.+.... ...|+|...|..
T Consensus 31 f~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~ 67 (313)
T PRK05564 31 IVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP 67 (313)
T ss_pred eECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc
Confidence 9999999999999998875421 235778766654
No 494
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=94.62 E-value=0.019 Score=39.87 Aligned_cols=19 Identities=37% Similarity=0.406 Sum_probs=16.1
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|.|+-|.|||||.+.+...
T Consensus 5 l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 5 LTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEECCCCCHHHHHHHHHhc
Confidence 6899999999999976544
No 495
>PRK14526 adenylate kinase; Provisional
Probab=94.62 E-value=0.021 Score=41.70 Aligned_cols=20 Identities=25% Similarity=0.009 Sum_probs=17.1
Q ss_pred ccccCcCCCchhHHHHhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~ 108 (130)
+.|.|..|+||||+++.+..
T Consensus 3 i~l~G~pGsGKsT~a~~La~ 22 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSN 22 (211)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 44789999999999998764
No 496
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.61 E-value=0.018 Score=49.24 Aligned_cols=19 Identities=32% Similarity=0.209 Sum_probs=17.1
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|+|-.|+|||||+|.+-+-
T Consensus 504 IvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 504 IVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 9999999999999997553
No 497
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=94.61 E-value=0.019 Score=40.28 Aligned_cols=18 Identities=33% Similarity=0.364 Sum_probs=16.3
Q ss_pred ccCcCCCchhHHHHhhhh
Q 042811 91 PFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~ 108 (130)
|+|..|.|||||+..|.-
T Consensus 24 i~G~Ng~GKStil~ai~~ 41 (202)
T PF13476_consen 24 IYGPNGSGKSTILEAIRY 41 (202)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999998744
No 498
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.60 E-value=0.02 Score=42.37 Aligned_cols=20 Identities=30% Similarity=0.275 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|-.|.|||||++.+....
T Consensus 35 i~G~nGsGKSTLl~~i~G~~ 54 (252)
T PRK14272 35 LIGPSGCGKTTFLRAINRMH 54 (252)
T ss_pred EECCCCCCHHHHHHHHhccC
Confidence 99999999999999998753
No 499
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.60 E-value=0.02 Score=43.22 Aligned_cols=20 Identities=25% Similarity=0.243 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|.|||||++.+....
T Consensus 33 l~G~nGsGKSTLl~~i~Gl~ 52 (275)
T PRK13639 33 LLGPNGAGKSTLFLHFNGIL 52 (275)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999997754
No 500
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=94.60 E-value=0.019 Score=43.02 Aligned_cols=20 Identities=25% Similarity=0.145 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|-.|.|||||++.+..-.
T Consensus 44 i~G~NGsGKSTLl~~l~Gl~ 63 (267)
T PRK15112 44 IIGENGSGKSTLAKMLAGMI 63 (267)
T ss_pred EEcCCCCCHHHHHHHHhCCC
Confidence 99999999999999997754
Done!