Query 042811
Match_columns 130
No_of_seqs 122 out of 1350
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 17:03:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042811.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042811hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.3 2E-13 6.7E-18 110.3 2.0 37 91-128 157-196 (549)
2 1vt4_I APAF-1 related killer D 99.0 3.8E-11 1.3E-15 103.4 -0.4 38 91-129 155-194 (1221)
3 1z6t_A APAF-1, apoptotic prote 98.9 2E-10 6.8E-15 92.7 -0.2 49 77-126 124-188 (591)
4 3sfz_A APAF-1, apoptotic pepti 98.9 3.7E-10 1.3E-14 96.7 0.8 51 78-128 125-191 (1249)
5 2w58_A DNAI, primosome compone 97.5 5.5E-05 1.9E-09 52.7 2.7 34 89-125 57-90 (202)
6 1jbk_A CLPB protein; beta barr 97.3 2.2E-05 7.4E-10 53.2 -0.6 21 90-110 47-67 (195)
7 2qen_A Walker-type ATPase; unk 97.3 3.2E-05 1.1E-09 57.6 0.2 33 78-110 13-55 (350)
8 2qby_A CDC6 homolog 1, cell di 97.3 3.9E-05 1.3E-09 57.8 -0.2 20 91-110 50-69 (386)
9 3ec2_A DNA replication protein 97.2 0.00015 5E-09 49.7 1.9 21 90-110 42-62 (180)
10 3lw7_A Adenylate kinase relate 97.1 0.00019 6.5E-09 48.0 1.7 16 91-106 6-21 (179)
11 1qhx_A CPT, protein (chloramph 97.1 0.0002 6.8E-09 48.7 1.9 22 89-110 6-27 (178)
12 3bos_A Putative DNA replicatio 97.1 0.00027 9.3E-09 49.7 2.6 34 90-126 56-89 (242)
13 1w5s_A Origin recognition comp 97.0 0.00022 7.5E-09 54.4 2.0 20 91-110 55-76 (412)
14 1njg_A DNA polymerase III subu 97.0 0.00026 8.8E-09 49.3 1.9 20 91-110 50-69 (250)
15 3kb2_A SPBC2 prophage-derived 96.9 0.00033 1.1E-08 47.1 1.9 21 89-109 4-24 (173)
16 1zp6_A Hypothetical protein AT 96.9 0.00027 9.4E-09 48.5 1.4 19 91-109 14-32 (191)
17 3vaa_A Shikimate kinase, SK; s 96.9 0.00035 1.2E-08 48.7 1.9 22 89-110 28-49 (199)
18 1kag_A SKI, shikimate kinase I 96.9 0.00038 1.3E-08 47.0 1.8 21 89-109 7-27 (173)
19 2fna_A Conserved hypothetical 96.9 0.0006 2E-08 50.6 3.1 30 91-126 35-64 (357)
20 3trf_A Shikimate kinase, SK; a 96.8 0.00044 1.5E-08 47.3 1.9 22 89-110 8-29 (185)
21 1ly1_A Polynucleotide kinase; 96.8 0.00045 1.5E-08 46.7 1.9 19 90-108 6-24 (181)
22 2p65_A Hypothetical protein PF 96.8 0.00034 1.2E-08 47.2 1.2 21 90-110 47-67 (187)
23 3iij_A Coilin-interacting nucl 96.8 0.00049 1.7E-08 47.0 1.9 22 89-110 14-35 (180)
24 1kgd_A CASK, peripheral plasma 96.8 0.00049 1.7E-08 47.3 1.9 20 91-110 10-29 (180)
25 2v1u_A Cell division control p 96.8 0.00048 1.6E-08 51.8 1.9 20 91-110 49-68 (387)
26 2chg_A Replication factor C sm 96.8 0.00051 1.7E-08 47.3 1.9 22 89-110 41-62 (226)
27 3qfl_A MLA10; coiled-coil, (CC 96.8 0.00099 3.4E-08 43.2 3.2 22 3-24 53-74 (115)
28 2jaq_A Deoxyguanosine kinase; 96.7 0.00054 1.8E-08 47.2 1.9 19 90-108 4-22 (205)
29 2qby_B CDC6 homolog 3, cell di 96.7 0.00046 1.6E-08 52.2 1.7 20 91-110 50-69 (384)
30 1kht_A Adenylate kinase; phosp 96.7 0.00056 1.9E-08 46.7 1.9 21 90-110 7-27 (192)
31 3n70_A Transport activator; si 96.7 0.00072 2.5E-08 44.9 2.4 21 90-110 28-48 (145)
32 3t61_A Gluconokinase; PSI-biol 96.7 0.00061 2.1E-08 47.4 1.9 22 89-110 21-42 (202)
33 2kjq_A DNAA-related protein; s 96.7 0.00053 1.8E-08 46.2 1.5 20 91-110 41-60 (149)
34 1l8q_A Chromosomal replication 96.7 0.0006 2E-08 50.9 1.9 22 89-110 40-61 (324)
35 1nks_A Adenylate kinase; therm 96.7 0.00056 1.9E-08 46.7 1.6 22 89-110 4-25 (194)
36 2qor_A Guanylate kinase; phosp 96.7 0.0006 2.1E-08 47.7 1.8 20 91-110 17-36 (204)
37 1knq_A Gluconate kinase; ALFA/ 96.7 0.00063 2.2E-08 46.1 1.9 20 90-109 12-31 (175)
38 1via_A Shikimate kinase; struc 96.7 0.00066 2.3E-08 46.2 1.9 23 88-110 6-28 (175)
39 2bdt_A BH3686; alpha-beta prot 96.7 0.00062 2.1E-08 46.8 1.7 18 91-108 7-24 (189)
40 1ye8_A Protein THEP1, hypothet 96.6 0.00068 2.3E-08 47.0 1.9 19 91-109 5-23 (178)
41 3h4m_A Proteasome-activating n 96.6 0.00067 2.3E-08 49.5 1.9 21 90-110 55-75 (285)
42 3uie_A Adenylyl-sulfate kinase 96.6 0.00068 2.3E-08 47.3 1.9 21 90-110 29-49 (200)
43 2rhm_A Putative kinase; P-loop 96.6 0.00067 2.3E-08 46.4 1.7 21 90-110 9-29 (193)
44 4eun_A Thermoresistant glucoki 96.6 0.00076 2.6E-08 47.0 1.9 20 91-110 34-53 (200)
45 2yvu_A Probable adenylyl-sulfa 96.6 0.0008 2.7E-08 46.2 1.9 21 90-110 17-37 (186)
46 2qz4_A Paraplegin; AAA+, SPG7, 96.6 0.00078 2.7E-08 48.3 2.0 22 89-110 42-63 (262)
47 4gp7_A Metallophosphoesterase; 96.6 0.00079 2.7E-08 46.0 1.7 17 91-107 14-30 (171)
48 1fnn_A CDC6P, cell division co 96.5 0.0021 7.3E-08 48.4 4.2 22 89-110 47-68 (389)
49 2j41_A Guanylate kinase; GMP, 96.5 0.00087 3E-08 46.4 1.9 20 91-110 11-30 (207)
50 1in4_A RUVB, holliday junction 96.5 0.00084 2.9E-08 50.7 1.9 23 88-110 53-75 (334)
51 2r62_A Cell division protease 96.5 0.0013 4.4E-08 47.6 2.7 22 89-110 47-68 (268)
52 1ixz_A ATP-dependent metallopr 96.5 0.00091 3.1E-08 48.1 1.9 22 89-110 52-73 (254)
53 3c8u_A Fructokinase; YP_612366 96.5 0.0009 3.1E-08 47.0 1.8 20 91-110 27-46 (208)
54 3tr0_A Guanylate kinase, GMP k 96.5 0.00094 3.2E-08 46.2 1.8 19 91-109 12-30 (205)
55 1lv7_A FTSH; alpha/beta domain 96.5 0.00092 3.1E-08 48.2 1.8 22 89-110 48-69 (257)
56 1lvg_A Guanylate kinase, GMP k 96.5 0.00091 3.1E-08 46.8 1.7 19 91-109 9-27 (198)
57 2ze6_A Isopentenyl transferase 96.5 0.00098 3.4E-08 48.5 1.9 20 90-109 5-24 (253)
58 3syl_A Protein CBBX; photosynt 96.5 0.0012 4.3E-08 48.5 2.5 22 89-110 70-91 (309)
59 2z4s_A Chromosomal replication 96.4 0.001 3.4E-08 52.3 1.9 22 89-110 133-154 (440)
60 2bbw_A Adenylate kinase 4, AK4 96.4 0.001 3.4E-08 47.9 1.7 21 90-110 31-51 (246)
61 3t15_A Ribulose bisphosphate c 96.4 0.0012 4.1E-08 49.0 2.2 21 90-110 40-60 (293)
62 3cm0_A Adenylate kinase; ATP-b 96.4 0.0012 4.1E-08 45.0 1.9 20 90-109 8-27 (186)
63 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.0011 3.8E-08 48.2 1.9 21 90-110 8-28 (260)
64 2if2_A Dephospho-COA kinase; a 96.4 0.0011 3.6E-08 46.1 1.6 18 90-107 5-22 (204)
65 1y63_A LMAJ004144AAA protein; 96.4 0.0012 4.2E-08 45.4 1.9 21 89-109 13-33 (184)
66 2iyv_A Shikimate kinase, SK; t 96.4 0.0013 4.4E-08 44.9 1.9 21 89-109 5-25 (184)
67 1e6c_A Shikimate kinase; phosp 96.4 0.0013 4.5E-08 44.2 2.0 21 89-109 5-25 (173)
68 1tev_A UMP-CMP kinase; ploop, 96.4 0.0013 4.5E-08 44.8 1.9 19 91-109 8-26 (196)
69 2x8a_A Nuclear valosin-contain 96.4 0.0012 4.2E-08 48.6 1.9 22 89-110 47-68 (274)
70 3b9p_A CG5977-PA, isoform A; A 96.4 0.0012 4.2E-08 48.4 1.9 22 89-110 57-78 (297)
71 2plr_A DTMP kinase, probable t 96.4 0.0013 4.5E-08 45.5 1.9 21 90-110 8-28 (213)
72 1cke_A CK, MSSA, protein (cyti 96.4 0.0013 4.5E-08 46.2 1.9 20 90-109 9-28 (227)
73 1sxj_D Activator 1 41 kDa subu 96.4 0.00068 2.3E-08 50.6 0.4 21 90-110 62-82 (353)
74 2vli_A Antibiotic resistance p 96.3 0.00096 3.3E-08 45.3 1.1 21 90-110 9-29 (183)
75 3a00_A Guanylate kinase, GMP k 96.3 0.0013 4.4E-08 45.4 1.8 20 91-110 6-25 (186)
76 2pt5_A Shikimate kinase, SK; a 96.3 0.0014 5E-08 43.9 2.0 20 89-108 3-22 (168)
77 1d2n_A N-ethylmaleimide-sensit 96.3 0.0013 4.5E-08 47.8 1.9 20 91-110 69-88 (272)
78 1znw_A Guanylate kinase, GMP k 96.3 0.0014 4.7E-08 46.0 1.9 20 91-110 25-44 (207)
79 3cf0_A Transitional endoplasmi 96.3 0.0013 4.5E-08 48.8 1.9 21 90-110 53-73 (301)
80 1yrb_A ATP(GTP)binding protein 96.3 0.0013 4.4E-08 47.3 1.7 20 91-110 19-38 (262)
81 1hqc_A RUVB; extended AAA-ATPa 96.3 0.0013 4.3E-08 48.7 1.7 22 89-110 41-62 (324)
82 1gvn_B Zeta; postsegregational 96.3 0.0014 4.7E-08 48.7 1.9 21 90-110 37-57 (287)
83 1iy2_A ATP-dependent metallopr 96.3 0.0014 4.8E-08 47.9 1.9 21 90-110 77-97 (278)
84 1zuh_A Shikimate kinase; alpha 96.3 0.0016 5.3E-08 43.9 2.0 24 87-110 8-31 (168)
85 3co5_A Putative two-component 96.3 0.001 3.5E-08 44.1 1.0 22 89-110 30-51 (143)
86 3asz_A Uridine kinase; cytidin 96.3 0.0013 4.4E-08 45.9 1.6 20 91-110 11-30 (211)
87 1z6g_A Guanylate kinase; struc 96.3 0.0015 5.2E-08 46.4 1.9 20 91-110 28-47 (218)
88 2cdn_A Adenylate kinase; phosp 96.3 0.0016 5.6E-08 45.1 1.9 22 89-110 23-44 (201)
89 2c95_A Adenylate kinase 1; tra 96.3 0.0015 5E-08 44.8 1.7 20 91-110 14-33 (196)
90 2qgz_A Helicase loader, putati 96.2 0.0017 5.7E-08 48.7 2.0 22 89-110 155-176 (308)
91 2i3b_A HCR-ntpase, human cance 96.2 0.0017 5.9E-08 45.5 1.8 20 91-110 6-25 (189)
92 2qt1_A Nicotinamide riboside k 96.2 0.0015 5.3E-08 45.5 1.6 19 91-109 26-44 (207)
93 1xjc_A MOBB protein homolog; s 96.2 0.0035 1.2E-07 43.3 3.3 21 90-110 8-28 (169)
94 1xwi_A SKD1 protein; VPS4B, AA 96.2 0.0018 6.2E-08 48.7 2.0 22 89-110 48-69 (322)
95 3tau_A Guanylate kinase, GMP k 96.2 0.0018 6E-08 45.6 1.7 20 91-110 13-32 (208)
96 1jjv_A Dephospho-COA kinase; P 96.2 0.0018 6.1E-08 45.1 1.7 18 91-108 7-24 (206)
97 1aky_A Adenylate kinase; ATP:A 96.2 0.0019 6.7E-08 45.4 1.9 21 90-110 8-28 (220)
98 3t1o_A Gliding protein MGLA; G 96.2 0.002 6.7E-08 43.7 1.9 21 90-110 18-38 (198)
99 3nwj_A ATSK2; P loop, shikimat 96.2 0.0019 6.5E-08 47.2 1.9 22 89-110 51-72 (250)
100 3pxg_A Negative regulator of g 96.1 0.00065 2.2E-08 53.7 -0.7 32 79-110 182-225 (468)
101 3pfi_A Holliday junction ATP-d 96.1 0.002 6.7E-08 48.2 2.0 22 89-110 58-79 (338)
102 1ukz_A Uridylate kinase; trans 96.1 0.002 6.7E-08 44.7 1.9 22 89-110 18-39 (203)
103 2pbr_A DTMP kinase, thymidylat 96.1 0.0021 7.1E-08 43.9 1.9 19 91-109 5-23 (195)
104 2ehv_A Hypothetical protein PH 96.1 0.0019 6.4E-08 45.9 1.7 18 91-108 35-52 (251)
105 1zd8_A GTP:AMP phosphotransfer 96.1 0.0017 5.9E-08 46.0 1.6 21 90-110 11-31 (227)
106 2bwj_A Adenylate kinase 5; pho 96.1 0.0018 6.3E-08 44.4 1.7 21 90-110 16-36 (199)
107 1m7g_A Adenylylsulfate kinase; 96.1 0.0021 7.1E-08 45.1 1.9 21 90-110 29-49 (211)
108 1s96_A Guanylate kinase, GMP k 96.1 0.0021 7.1E-08 46.0 1.8 20 91-110 21-40 (219)
109 1sxj_B Activator 1 37 kDa subu 96.1 0.0021 7.1E-08 47.2 1.9 22 89-110 45-66 (323)
110 1zak_A Adenylate kinase; ATP:A 96.1 0.0019 6.7E-08 45.5 1.7 22 89-110 8-29 (222)
111 1iqp_A RFCS; clamp loader, ext 96.1 0.0021 7.2E-08 47.3 1.9 21 90-110 50-70 (327)
112 3fb4_A Adenylate kinase; psych 96.1 0.0023 7.7E-08 44.8 1.9 20 89-108 3-22 (216)
113 3eie_A Vacuolar protein sortin 96.1 0.0021 7.2E-08 48.1 1.9 22 89-110 54-75 (322)
114 1rj9_A FTSY, signal recognitio 96.1 0.0021 7.3E-08 48.2 1.9 21 90-110 106-126 (304)
115 2pez_A Bifunctional 3'-phospho 96.1 0.0023 7.8E-08 43.6 1.9 21 90-110 9-29 (179)
116 3tif_A Uncharacterized ABC tra 96.1 0.0021 7.2E-08 46.4 1.7 20 91-110 36-55 (235)
117 4e22_A Cytidylate kinase; P-lo 96.1 0.0021 7.3E-08 46.6 1.7 19 90-108 31-49 (252)
118 2pcj_A ABC transporter, lipopr 96.1 0.002 6.8E-08 46.2 1.5 20 91-110 35-54 (224)
119 1qf9_A UMP/CMP kinase, protein 96.0 0.0022 7.4E-08 43.6 1.7 21 90-110 10-30 (194)
120 4a74_A DNA repair and recombin 96.0 0.002 6.8E-08 45.1 1.5 19 91-109 30-48 (231)
121 2ce2_X GTPase HRAS; signaling 96.0 0.0021 7.3E-08 42.0 1.5 21 89-109 6-26 (166)
122 1rz3_A Hypothetical protein rb 96.0 0.0021 7.2E-08 44.9 1.6 20 91-110 27-46 (201)
123 1ex7_A Guanylate kinase; subst 96.0 0.0024 8.1E-08 44.8 1.8 21 90-110 5-25 (186)
124 3dl0_A Adenylate kinase; phosp 96.0 0.0024 8.2E-08 44.7 1.9 20 89-108 3-22 (216)
125 2zej_A Dardarin, leucine-rich 96.0 0.0023 8E-08 43.5 1.7 20 89-108 5-24 (184)
126 1htw_A HI0065; nucleotide-bind 96.0 0.0025 8.6E-08 43.4 1.9 20 91-110 38-57 (158)
127 2wjg_A FEOB, ferrous iron tran 96.0 0.0026 9E-08 43.0 1.9 20 90-109 11-30 (188)
128 1oix_A RAS-related protein RAB 96.0 0.0023 7.7E-08 44.1 1.6 19 91-109 34-52 (191)
129 2hf9_A Probable hydrogenase ni 96.0 0.0023 7.8E-08 44.9 1.6 21 90-110 42-62 (226)
130 2cbz_A Multidrug resistance-as 96.0 0.0025 8.5E-08 46.1 1.8 20 91-110 36-55 (237)
131 1z2a_A RAS-related protein RAB 96.0 0.0026 9E-08 41.9 1.8 20 90-109 9-28 (168)
132 2f9l_A RAB11B, member RAS onco 96.0 0.0026 9.1E-08 43.8 1.9 19 91-109 10-28 (199)
133 2z0h_A DTMP kinase, thymidylat 96.0 0.0028 9.5E-08 43.4 1.9 19 91-109 5-23 (197)
134 2onk_A Molybdate/tungstate ABC 96.0 0.0026 8.9E-08 46.1 1.9 20 91-110 29-48 (240)
135 2dyk_A GTP-binding protein; GT 96.0 0.0027 9.3E-08 41.6 1.8 21 89-109 4-24 (161)
136 2wwf_A Thymidilate kinase, put 96.0 0.0024 8.4E-08 44.3 1.7 28 90-119 14-41 (212)
137 2wji_A Ferrous iron transport 96.0 0.0026 8.9E-08 42.5 1.7 20 90-109 7-26 (165)
138 2p5t_B PEZT; postsegregational 96.0 0.0019 6.4E-08 46.8 1.1 22 89-110 35-56 (253)
139 3con_A GTPase NRAS; structural 96.0 0.0027 9.2E-08 43.1 1.8 21 89-109 24-44 (190)
140 1nn5_A Similar to deoxythymidy 96.0 0.0025 8.5E-08 44.3 1.7 28 90-119 13-40 (215)
141 1uf9_A TT1252 protein; P-loop, 95.9 0.0023 7.9E-08 44.0 1.4 18 91-108 13-30 (203)
142 3uk6_A RUVB-like 2; hexameric 95.9 0.0024 8.3E-08 48.1 1.7 20 91-110 75-94 (368)
143 1g6h_A High-affinity branched- 95.9 0.0027 9.2E-08 46.4 1.8 20 91-110 38-57 (257)
144 2v54_A DTMP kinase, thymidylat 95.9 0.0028 9.7E-08 43.7 1.9 20 91-110 9-28 (204)
145 3nbx_X ATPase RAVA; AAA+ ATPas 95.9 0.00087 3E-08 53.8 -0.9 21 90-110 45-65 (500)
146 3b85_A Phosphate starvation-in 95.9 0.0025 8.7E-08 45.2 1.6 19 91-109 27-45 (208)
147 1b0u_A Histidine permease; ABC 95.9 0.0027 9.4E-08 46.5 1.8 20 91-110 37-56 (262)
148 3te6_A Regulatory protein SIR3 95.9 0.0022 7.5E-08 48.6 1.3 21 90-110 49-69 (318)
149 2bjv_A PSP operon transcriptio 95.9 0.003 1E-07 45.7 2.0 21 90-110 33-53 (265)
150 1ji0_A ABC transporter; ATP bi 95.9 0.0028 9.6E-08 45.8 1.8 20 91-110 37-56 (240)
151 3aez_A Pantothenate kinase; tr 95.9 0.0028 9.5E-08 47.7 1.8 20 91-110 95-114 (312)
152 3b9q_A Chloroplast SRP recepto 95.9 0.0028 9.6E-08 47.5 1.8 20 91-110 105-124 (302)
153 2d2e_A SUFC protein; ABC-ATPas 95.9 0.0029 9.9E-08 46.0 1.9 19 91-109 34-52 (250)
154 1sgw_A Putative ABC transporte 95.9 0.0029 9.9E-08 45.2 1.8 20 91-110 40-59 (214)
155 1ofh_A ATP-dependent HSL prote 95.9 0.0029 9.8E-08 46.3 1.9 22 89-110 53-74 (310)
156 2pze_A Cystic fibrosis transme 95.9 0.0029 1E-07 45.4 1.8 20 91-110 39-58 (229)
157 2cvh_A DNA repair and recombin 95.9 0.0029 1E-07 44.0 1.7 18 91-108 25-42 (220)
158 2qp9_X Vacuolar protein sortin 95.9 0.003 1E-07 48.1 1.9 21 90-110 88-108 (355)
159 1mv5_A LMRA, multidrug resista 95.9 0.003 1E-07 45.7 1.8 20 91-110 33-52 (243)
160 1gtv_A TMK, thymidylate kinase 95.9 0.0013 4.4E-08 45.8 -0.1 19 91-109 5-23 (214)
161 3d8b_A Fidgetin-like protein 1 95.9 0.003 1E-07 48.0 1.9 20 91-110 122-141 (357)
162 2xb4_A Adenylate kinase; ATP-b 95.9 0.0033 1.1E-07 44.6 1.9 19 90-108 4-22 (223)
163 2olj_A Amino acid ABC transpor 95.8 0.0032 1.1E-07 46.4 1.8 20 91-110 55-74 (263)
164 2px0_A Flagellar biosynthesis 95.8 0.0027 9.2E-08 47.5 1.5 20 91-110 110-129 (296)
165 3llu_A RAS-related GTP-binding 95.8 0.0027 9.2E-08 43.6 1.4 23 88-110 22-44 (196)
166 3ney_A 55 kDa erythrocyte memb 95.8 0.0034 1.2E-07 44.4 1.9 20 91-110 24-43 (197)
167 1odf_A YGR205W, hypothetical 3 95.8 0.0032 1.1E-07 46.9 1.9 20 91-110 36-55 (290)
168 3be4_A Adenylate kinase; malar 95.8 0.0031 1.1E-07 44.5 1.7 21 90-110 9-29 (217)
169 1e4v_A Adenylate kinase; trans 95.8 0.0031 1.1E-07 44.2 1.7 19 90-108 4-22 (214)
170 3sop_A Neuronal-specific septi 95.8 0.0029 1E-07 46.6 1.6 20 91-110 7-26 (270)
171 2ixe_A Antigen peptide transpo 95.8 0.0033 1.1E-07 46.4 1.8 20 91-110 50-69 (271)
172 2ff7_A Alpha-hemolysin translo 95.8 0.0033 1.1E-07 45.7 1.8 20 91-110 40-59 (247)
173 1u8z_A RAS-related protein RAL 95.8 0.0035 1.2E-07 41.1 1.8 20 90-109 8-27 (168)
174 2zu0_C Probable ATP-dependent 95.8 0.0033 1.1E-07 46.2 1.9 19 91-109 51-69 (267)
175 2qi9_C Vitamin B12 import ATP- 95.8 0.0034 1.1E-07 45.8 1.8 20 91-110 31-50 (249)
176 1ak2_A Adenylate kinase isoenz 95.8 0.0036 1.2E-07 44.6 1.9 22 89-110 19-40 (233)
177 2ghi_A Transport protein; mult 95.8 0.0034 1.2E-07 46.0 1.8 20 91-110 51-70 (260)
178 2ged_A SR-beta, signal recogni 95.8 0.0036 1.2E-07 42.6 1.8 21 89-109 51-71 (193)
179 2yz2_A Putative ABC transporte 95.8 0.0035 1.2E-07 46.0 1.8 20 91-110 38-57 (266)
180 3gfo_A Cobalt import ATP-bindi 95.8 0.0035 1.2E-07 46.5 1.8 20 91-110 39-58 (275)
181 1sxj_E Activator 1 40 kDa subu 95.8 0.0033 1.1E-07 47.1 1.7 21 89-109 39-59 (354)
182 1vpl_A ABC transporter, ATP-bi 95.8 0.0035 1.2E-07 45.9 1.8 20 91-110 46-65 (256)
183 1c1y_A RAS-related protein RAP 95.8 0.0038 1.3E-07 41.1 1.8 20 90-109 7-26 (167)
184 4fcw_A Chaperone protein CLPB; 95.8 0.0036 1.2E-07 45.9 1.9 22 89-110 50-71 (311)
185 2ihy_A ABC transporter, ATP-bi 95.7 0.0036 1.2E-07 46.4 1.8 20 91-110 52-71 (279)
186 4g1u_C Hemin import ATP-bindin 95.7 0.0035 1.2E-07 46.1 1.7 20 91-110 42-61 (266)
187 3pvs_A Replication-associated 95.7 0.0035 1.2E-07 49.4 1.9 20 91-110 55-74 (447)
188 1vht_A Dephospho-COA kinase; s 95.7 0.0036 1.2E-07 43.9 1.7 18 91-108 9-26 (218)
189 2w0m_A SSO2452; RECA, SSPF, un 95.7 0.0037 1.3E-07 43.6 1.7 20 91-110 28-47 (235)
190 1z08_A RAS-related protein RAB 95.7 0.004 1.4E-07 41.2 1.8 21 89-109 9-29 (170)
191 1ltq_A Polynucleotide kinase; 95.7 0.0038 1.3E-07 45.9 1.9 20 90-109 6-25 (301)
192 1um8_A ATP-dependent CLP prote 95.7 0.0038 1.3E-07 47.5 1.9 22 89-110 75-96 (376)
193 2nzj_A GTP-binding protein REM 95.7 0.0038 1.3E-07 41.4 1.7 22 89-110 7-28 (175)
194 2nq2_C Hypothetical ABC transp 95.7 0.0039 1.3E-07 45.5 1.8 20 91-110 36-55 (253)
195 1ek0_A Protein (GTP-binding pr 95.7 0.0041 1.4E-07 40.9 1.8 20 90-109 7-26 (170)
196 1z0j_A RAB-22, RAS-related pro 95.7 0.0041 1.4E-07 41.0 1.8 20 90-109 10-29 (170)
197 2jeo_A Uridine-cytidine kinase 95.7 0.004 1.4E-07 44.7 1.9 20 91-110 30-49 (245)
198 3kta_A Chromosome segregation 95.7 0.0036 1.2E-07 42.5 1.5 18 91-108 31-48 (182)
199 3lnc_A Guanylate kinase, GMP k 95.7 0.0026 9.1E-08 45.1 0.8 19 91-109 32-51 (231)
200 2erx_A GTP-binding protein DI- 95.7 0.0044 1.5E-07 40.9 1.9 20 90-109 7-26 (172)
201 1np6_A Molybdopterin-guanine d 95.6 0.0044 1.5E-07 42.9 1.8 22 89-110 9-30 (174)
202 3fwy_A Light-independent proto 95.6 0.004 1.4E-07 47.0 1.7 20 91-110 53-72 (314)
203 1nrj_B SR-beta, signal recogni 95.6 0.0044 1.5E-07 43.1 1.8 23 88-110 14-36 (218)
204 2wsm_A Hydrogenase expression/ 95.6 0.0039 1.3E-07 43.5 1.6 20 90-109 34-53 (221)
205 1z0f_A RAB14, member RAS oncog 95.6 0.0045 1.5E-07 41.2 1.8 22 89-110 18-39 (179)
206 2vp4_A Deoxynucleoside kinase; 95.6 0.0041 1.4E-07 44.3 1.7 19 91-109 25-43 (230)
207 3q72_A GTP-binding protein RAD 95.6 0.0035 1.2E-07 41.3 1.2 20 90-109 6-25 (166)
208 3q85_A GTP-binding protein REM 95.6 0.0044 1.5E-07 41.0 1.7 18 90-107 6-23 (169)
209 2ga8_A Hypothetical 39.9 kDa p 95.6 0.0046 1.6E-07 47.7 1.9 22 89-110 27-48 (359)
210 1jr3_A DNA polymerase III subu 95.6 0.0048 1.6E-07 46.3 2.0 20 91-110 43-62 (373)
211 1m7b_A RND3/RHOE small GTP-bin 95.6 0.0043 1.5E-07 42.0 1.5 20 90-109 11-30 (184)
212 2og2_A Putative signal recogni 95.6 0.0046 1.6E-07 47.6 1.8 20 91-110 162-181 (359)
213 2qnr_A Septin-2, protein NEDD5 95.6 0.0036 1.2E-07 46.7 1.2 20 90-109 22-41 (301)
214 1n0w_A DNA repair protein RAD5 95.6 0.0046 1.6E-07 43.6 1.7 19 91-109 29-47 (243)
215 2eyu_A Twitching motility prot 95.5 0.0049 1.7E-07 45.2 1.9 20 91-110 30-49 (261)
216 1ky3_A GTP-binding protein YPT 95.5 0.005 1.7E-07 41.0 1.8 21 89-109 11-31 (182)
217 3tlx_A Adenylate kinase 2; str 95.5 0.0051 1.7E-07 44.3 1.9 21 90-110 33-53 (243)
218 2pjz_A Hypothetical protein ST 95.5 0.0048 1.6E-07 45.4 1.8 23 87-109 30-53 (263)
219 2r8r_A Sensor protein; KDPD, P 95.5 0.01 3.4E-07 43.0 3.5 27 91-119 11-37 (228)
220 2zan_A Vacuolar protein sortin 95.5 0.0047 1.6E-07 48.5 1.9 20 91-110 172-191 (444)
221 1sxj_A Activator 1 95 kDa subu 95.5 0.0048 1.6E-07 49.2 1.9 22 89-110 80-101 (516)
222 3cbq_A GTP-binding protein REM 95.5 0.0045 1.5E-07 42.7 1.6 19 89-107 26-44 (195)
223 3tw8_B RAS-related protein RAB 95.5 0.0045 1.6E-07 41.2 1.6 20 90-109 13-32 (181)
224 3zvl_A Bifunctional polynucleo 95.5 0.0055 1.9E-07 47.7 2.2 20 91-110 263-282 (416)
225 3kkq_A RAS-related protein M-R 95.5 0.0052 1.8E-07 41.3 1.8 20 90-109 22-41 (183)
226 2fn4_A P23, RAS-related protei 95.5 0.0046 1.6E-07 41.2 1.5 21 89-109 12-32 (181)
227 2hxs_A RAB-26, RAS-related pro 95.5 0.0059 2E-07 40.7 2.1 21 89-109 9-29 (178)
228 1uj2_A Uridine-cytidine kinase 95.5 0.0053 1.8E-07 44.3 1.9 20 91-110 27-46 (252)
229 2gj8_A MNME, tRNA modification 95.5 0.0046 1.6E-07 41.7 1.5 21 89-109 7-27 (172)
230 2f1r_A Molybdopterin-guanine d 95.5 0.002 6.9E-08 44.5 -0.3 22 89-110 5-26 (171)
231 1svi_A GTP-binding protein YSX 95.5 0.0045 1.6E-07 42.0 1.5 21 89-109 26-46 (195)
232 1kao_A RAP2A; GTP-binding prot 95.5 0.0055 1.9E-07 40.1 1.8 20 90-109 7-26 (167)
233 3pxi_A Negative regulator of g 95.5 0.0018 6.3E-08 53.9 -0.7 32 79-110 182-225 (758)
234 3ihw_A Centg3; RAS, centaurin, 95.5 0.0054 1.9E-07 41.8 1.8 19 90-108 24-42 (184)
235 3ake_A Cytidylate kinase; CMP 95.5 0.0057 2E-07 42.2 1.9 20 90-109 6-25 (208)
236 3c5c_A RAS-like protein 12; GD 95.5 0.0055 1.9E-07 41.8 1.8 21 89-109 24-44 (187)
237 1pui_A ENGB, probable GTP-bind 95.5 0.0034 1.2E-07 43.3 0.7 20 90-109 30-49 (210)
238 3e70_C DPA, signal recognition 95.5 0.0053 1.8E-07 46.6 1.9 20 91-110 134-153 (328)
239 1r8s_A ADP-ribosylation factor 95.5 0.0059 2E-07 40.2 1.9 18 90-107 4-21 (164)
240 1lw7_A Transcriptional regulat 95.5 0.0045 1.5E-07 47.2 1.5 20 91-110 175-194 (365)
241 2a9k_A RAS-related protein RAL 95.4 0.0057 2E-07 40.9 1.8 21 89-109 21-41 (187)
242 1wms_A RAB-9, RAB9, RAS-relate 95.4 0.0057 2E-07 40.7 1.8 21 89-109 10-30 (177)
243 1r2q_A RAS-related protein RAB 95.4 0.0058 2E-07 40.2 1.8 20 90-109 10-29 (170)
244 2efe_B Small GTP-binding prote 95.4 0.0058 2E-07 40.9 1.8 21 89-109 15-35 (181)
245 2yhs_A FTSY, cell division pro 95.4 0.0054 1.8E-07 49.3 1.9 20 91-110 298-317 (503)
246 4dsu_A GTPase KRAS, isoform 2B 95.4 0.0059 2E-07 41.0 1.8 21 90-110 8-28 (189)
247 2cxx_A Probable GTP-binding pr 95.4 0.005 1.7E-07 41.5 1.4 21 89-109 4-24 (190)
248 3hws_A ATP-dependent CLP prote 95.4 0.0056 1.9E-07 46.4 1.9 22 89-110 54-75 (363)
249 2bme_A RAB4A, RAS-related prot 95.4 0.0053 1.8E-07 41.3 1.5 20 90-109 14-33 (186)
250 3pqc_A Probable GTP-binding pr 95.4 0.0052 1.8E-07 41.5 1.5 22 88-109 25-46 (195)
251 2grj_A Dephospho-COA kinase; T 95.4 0.0057 2E-07 42.8 1.7 19 91-109 17-35 (192)
252 3bwd_D RAC-like GTP-binding pr 95.4 0.0062 2.1E-07 40.7 1.8 21 89-109 11-31 (182)
253 1fzq_A ADP-ribosylation factor 95.4 0.0047 1.6E-07 41.9 1.3 21 89-109 19-39 (181)
254 4eaq_A DTMP kinase, thymidylat 95.4 0.01 3.4E-07 42.5 3.0 20 91-110 31-50 (229)
255 1nij_A Hypothetical protein YJ 95.4 0.0045 1.6E-07 46.4 1.2 19 91-109 9-27 (318)
256 1upt_A ARL1, ADP-ribosylation 95.4 0.0063 2.2E-07 40.2 1.8 20 90-109 11-30 (171)
257 2lkc_A Translation initiation 95.4 0.0066 2.3E-07 40.4 1.9 20 89-108 11-30 (178)
258 1sxj_C Activator 1 40 kDa subu 95.4 0.006 2.1E-07 45.8 1.9 22 89-110 49-70 (340)
259 1sq5_A Pantothenate kinase; P- 95.4 0.0054 1.8E-07 45.8 1.6 20 91-110 85-104 (308)
260 1nlf_A Regulatory protein REPA 95.4 0.0052 1.8E-07 44.9 1.5 20 91-110 35-54 (279)
261 2chq_A Replication factor C sm 95.3 0.0063 2.2E-07 44.5 1.9 21 90-110 42-62 (319)
262 1g8p_A Magnesium-chelatase 38 95.3 0.0041 1.4E-07 46.4 0.8 21 90-110 49-69 (350)
263 1g16_A RAS-related protein SEC 95.3 0.0058 2E-07 40.3 1.5 20 90-109 7-26 (170)
264 2bov_A RAla, RAS-related prote 95.3 0.0066 2.2E-07 41.5 1.8 21 89-109 17-37 (206)
265 2atv_A RERG, RAS-like estrogen 95.3 0.0066 2.2E-07 41.5 1.8 20 90-109 32-51 (196)
266 1mh1_A RAC1; GTP-binding, GTPa 95.3 0.0067 2.3E-07 40.6 1.8 20 90-109 9-28 (186)
267 1vg8_A RAS-related protein RAB 95.3 0.0066 2.3E-07 41.6 1.8 21 89-109 11-31 (207)
268 2oil_A CATX-8, RAS-related pro 95.3 0.0068 2.3E-07 41.2 1.9 21 89-109 28-48 (193)
269 2bbs_A Cystic fibrosis transme 95.3 0.0058 2E-07 45.6 1.5 20 91-110 69-88 (290)
270 1f6b_A SAR1; gtpases, N-termin 95.3 0.0048 1.6E-07 42.6 1.0 20 89-108 28-47 (198)
271 3r20_A Cytidylate kinase; stru 95.3 0.007 2.4E-07 43.9 1.9 20 91-110 14-33 (233)
272 2f6r_A COA synthase, bifunctio 95.3 0.0056 1.9E-07 45.2 1.4 17 91-107 80-96 (281)
273 1z47_A CYSA, putative ABC-tran 95.3 0.0062 2.1E-07 46.8 1.7 20 91-110 46-65 (355)
274 1vma_A Cell division protein F 95.3 0.0063 2.2E-07 45.7 1.7 20 91-110 109-128 (306)
275 2ce7_A Cell division protein F 95.3 0.0064 2.2E-07 48.5 1.9 22 89-110 52-73 (476)
276 4b4t_M 26S protease regulatory 95.3 0.0055 1.9E-07 48.3 1.5 20 91-110 220-239 (434)
277 3bc1_A RAS-related protein RAB 95.3 0.007 2.4E-07 40.7 1.8 21 89-109 14-34 (195)
278 3tkl_A RAS-related protein RAB 95.3 0.0071 2.4E-07 41.0 1.8 22 89-110 19-40 (196)
279 2iwr_A Centaurin gamma 1; ANK 95.2 0.0051 1.7E-07 41.2 1.0 20 90-109 11-30 (178)
280 3crm_A TRNA delta(2)-isopenten 95.2 0.0069 2.4E-07 46.0 1.8 21 90-110 9-29 (323)
281 2g6b_A RAS-related protein RAB 95.2 0.0074 2.5E-07 40.3 1.8 20 90-109 14-33 (180)
282 2fh5_B SR-beta, signal recogni 95.2 0.0073 2.5E-07 41.8 1.8 21 89-109 10-30 (214)
283 2v9p_A Replication protein E1; 95.2 0.007 2.4E-07 45.6 1.9 19 91-109 131-149 (305)
284 1ojl_A Transcriptional regulat 95.2 0.0084 2.9E-07 44.7 2.3 21 90-110 29-49 (304)
285 1ypw_A Transitional endoplasmi 95.2 0.0049 1.7E-07 52.0 1.1 20 91-110 243-262 (806)
286 1cr0_A DNA primase/helicase; R 95.2 0.0061 2.1E-07 44.8 1.5 20 91-110 40-59 (296)
287 2q3h_A RAS homolog gene family 95.2 0.0072 2.5E-07 41.4 1.7 21 89-109 23-43 (201)
288 3dz8_A RAS-related protein RAB 95.2 0.0068 2.3E-07 41.3 1.6 22 89-110 26-47 (191)
289 3vfd_A Spastin; ATPase, microt 95.2 0.0073 2.5E-07 46.3 1.9 20 91-110 153-172 (389)
290 1zbd_A Rabphilin-3A; G protein 95.2 0.0075 2.6E-07 41.3 1.8 21 89-109 11-31 (203)
291 4bas_A ADP-ribosylation factor 95.2 0.0067 2.3E-07 41.2 1.6 23 88-110 19-41 (199)
292 1g29_1 MALK, maltose transport 95.2 0.0072 2.5E-07 46.7 1.9 20 91-110 34-53 (372)
293 3fvq_A Fe(3+) IONS import ATP- 95.2 0.0061 2.1E-07 46.9 1.5 20 91-110 35-54 (359)
294 4b4t_K 26S protease regulatory 95.2 0.0061 2.1E-07 48.0 1.5 20 91-110 211-230 (428)
295 1m2o_B GTP-binding protein SAR 95.2 0.0068 2.3E-07 41.5 1.5 21 89-109 26-46 (190)
296 2yyz_A Sugar ABC transporter, 95.2 0.007 2.4E-07 46.6 1.7 20 91-110 34-53 (359)
297 2vhj_A Ntpase P4, P4; non- hyd 95.2 0.007 2.4E-07 46.2 1.7 19 91-109 128-146 (331)
298 2a5j_A RAS-related protein RAB 95.2 0.0079 2.7E-07 40.9 1.9 21 89-109 24-44 (191)
299 4b4t_J 26S protease regulatory 95.2 0.0062 2.1E-07 47.7 1.5 20 91-110 187-206 (405)
300 3clv_A RAB5 protein, putative; 95.2 0.0078 2.7E-07 40.6 1.8 21 89-109 10-30 (208)
301 3tui_C Methionine import ATP-b 95.2 0.0072 2.5E-07 46.7 1.8 20 91-110 59-78 (366)
302 3reg_A RHO-like small GTPase; 95.2 0.0079 2.7E-07 41.0 1.8 20 90-109 27-46 (194)
303 2it1_A 362AA long hypothetical 95.2 0.0071 2.4E-07 46.6 1.7 20 91-110 34-53 (362)
304 3t5g_A GTP-binding protein RHE 95.2 0.0071 2.4E-07 40.5 1.5 21 89-109 9-29 (181)
305 2y8e_A RAB-protein 6, GH09086P 95.1 0.0071 2.4E-07 40.2 1.5 20 90-109 18-37 (179)
306 1v43_A Sugar-binding transport 95.1 0.0072 2.5E-07 46.7 1.7 20 91-110 42-61 (372)
307 1gwn_A RHO-related GTP-binding 95.1 0.007 2.4E-07 42.2 1.5 21 89-109 31-51 (205)
308 1x3s_A RAS-related protein RAB 95.1 0.0081 2.8E-07 40.6 1.8 20 90-109 19-38 (195)
309 4b4t_L 26S protease subunit RP 95.1 0.0079 2.7E-07 47.5 2.0 20 91-110 220-239 (437)
310 1ls1_A Signal recognition part 95.1 0.0075 2.6E-07 44.9 1.7 20 91-110 103-122 (295)
311 1zu4_A FTSY; GTPase, signal re 95.1 0.0076 2.6E-07 45.5 1.8 20 91-110 110-129 (320)
312 1zd9_A ADP-ribosylation factor 95.1 0.0083 2.8E-07 40.8 1.8 21 89-109 25-45 (188)
313 3nh6_A ATP-binding cassette SU 95.1 0.0052 1.8E-07 46.3 0.8 19 91-109 85-103 (306)
314 2r44_A Uncharacterized protein 95.1 0.0052 1.8E-07 45.8 0.8 22 89-110 49-70 (331)
315 1r6b_X CLPA protein; AAA+, N-t 95.1 0.0029 1E-07 52.5 -0.6 20 91-110 212-231 (758)
316 3oes_A GTPase rhebl1; small GT 95.1 0.0074 2.5E-07 41.5 1.5 21 90-110 28-48 (201)
317 1qvr_A CLPB protein; coiled co 95.1 0.0026 9E-08 53.7 -0.9 20 91-110 196-215 (854)
318 2dhr_A FTSH; AAA+ protein, hex 95.1 0.0078 2.7E-07 48.2 1.9 21 90-110 68-88 (499)
319 3d3q_A TRNA delta(2)-isopenten 95.1 0.0084 2.9E-07 45.9 1.9 21 90-110 11-31 (340)
320 3lxx_A GTPase IMAP family memb 95.1 0.0084 2.9E-07 42.6 1.8 21 90-110 33-53 (239)
321 1z06_A RAS-related protein RAB 95.1 0.0087 3E-07 40.6 1.8 21 89-109 23-43 (189)
322 3rlf_A Maltose/maltodextrin im 95.1 0.0078 2.7E-07 46.7 1.7 20 91-110 34-53 (381)
323 2fg5_A RAB-22B, RAS-related pr 95.1 0.0077 2.6E-07 41.1 1.5 20 90-109 27-46 (192)
324 3end_A Light-independent proto 95.0 0.0081 2.8E-07 44.4 1.7 20 91-110 46-65 (307)
325 3tqc_A Pantothenate kinase; bi 95.0 0.0085 2.9E-07 45.4 1.9 20 91-110 97-116 (321)
326 2il1_A RAB12; G-protein, GDP, 95.0 0.0081 2.8E-07 41.0 1.6 21 89-109 29-49 (192)
327 2gf9_A RAS-related protein RAB 95.0 0.0093 3.2E-07 40.4 1.8 21 89-109 25-45 (189)
328 1ksh_A ARF-like protein 2; sma 95.0 0.0092 3.2E-07 40.2 1.8 20 90-109 22-41 (186)
329 2qu8_A Putative nucleolar GTP- 95.0 0.0095 3.2E-07 41.9 1.9 21 89-109 32-52 (228)
330 1moz_A ARL1, ADP-ribosylation 95.0 0.0062 2.1E-07 40.8 0.9 20 89-108 21-40 (183)
331 2p5s_A RAS and EF-hand domain 95.0 0.0095 3.3E-07 40.9 1.8 21 89-109 31-51 (199)
332 1q3t_A Cytidylate kinase; nucl 95.0 0.01 3.5E-07 42.3 2.0 19 91-109 21-39 (236)
333 2gf0_A GTP-binding protein DI- 95.0 0.0087 3E-07 40.7 1.6 21 89-109 11-31 (199)
334 2o52_A RAS-related protein RAB 95.0 0.0082 2.8E-07 41.3 1.5 21 89-109 28-48 (200)
335 2c9o_A RUVB-like 1; hexameric 94.9 0.0094 3.2E-07 46.8 1.9 20 91-110 68-87 (456)
336 2obl_A ESCN; ATPase, hydrolase 94.9 0.0084 2.9E-07 45.8 1.6 20 91-110 76-95 (347)
337 2h57_A ADP-ribosylation factor 94.9 0.0079 2.7E-07 40.8 1.3 22 89-110 24-45 (190)
338 3m6a_A ATP-dependent protease 94.9 0.0094 3.2E-07 48.0 1.9 20 91-110 113-132 (543)
339 1svm_A Large T antigen; AAA+ f 94.9 0.0096 3.3E-07 46.1 1.9 20 91-110 174-193 (377)
340 1cp2_A CP2, nitrogenase iron p 94.9 0.0084 2.9E-07 43.2 1.4 20 91-110 6-25 (269)
341 2cjw_A GTP-binding protein GEM 94.9 0.0099 3.4E-07 40.8 1.7 20 89-108 9-28 (192)
342 3kjh_A CO dehydrogenase/acetyl 94.9 0.0063 2.1E-07 43.0 0.7 18 91-108 5-22 (254)
343 3d31_A Sulfate/molybdate ABC t 94.9 0.0062 2.1E-07 46.6 0.7 20 91-110 31-50 (348)
344 2j1l_A RHO-related GTP-binding 94.9 0.0089 3.1E-07 41.7 1.4 20 90-109 38-57 (214)
345 2ocp_A DGK, deoxyguanosine kin 94.9 0.0092 3.2E-07 42.6 1.5 20 91-110 7-26 (241)
346 2v3c_C SRP54, signal recogniti 94.8 0.0088 3E-07 47.0 1.5 22 89-110 102-123 (432)
347 2atx_A Small GTP binding prote 94.8 0.0096 3.3E-07 40.5 1.5 21 89-109 21-41 (194)
348 3a8t_A Adenylate isopentenyltr 94.8 0.011 3.6E-07 45.3 1.9 21 90-110 44-64 (339)
349 2gza_A Type IV secretion syste 94.8 0.0092 3.1E-07 45.6 1.6 20 91-110 180-199 (361)
350 3q3j_B RHO-related GTP-binding 94.8 0.011 3.7E-07 41.3 1.8 20 90-109 31-50 (214)
351 2ew1_A RAS-related protein RAB 94.8 0.0097 3.3E-07 41.3 1.5 21 89-109 29-49 (201)
352 2fu5_C RAS-related protein RAB 94.8 0.0065 2.2E-07 40.8 0.6 21 89-109 11-31 (183)
353 2f7s_A C25KG, RAS-related prot 94.8 0.011 3.7E-07 41.0 1.7 21 89-109 28-48 (217)
354 1zj6_A ADP-ribosylation factor 94.8 0.01 3.5E-07 40.1 1.6 19 90-108 20-38 (187)
355 1j8m_F SRP54, signal recogniti 94.8 0.0096 3.3E-07 44.5 1.6 20 91-110 103-122 (297)
356 4b4t_H 26S protease regulatory 94.8 0.0092 3.1E-07 47.5 1.5 20 91-110 248-267 (467)
357 2bcg_Y Protein YP2, GTP-bindin 94.8 0.01 3.4E-07 40.8 1.5 21 89-109 11-31 (206)
358 2yv5_A YJEQ protein; hydrolase 94.8 0.01 3.6E-07 44.2 1.7 19 91-110 170-188 (302)
359 2fv8_A H6, RHO-related GTP-bin 94.8 0.01 3.4E-07 41.1 1.5 22 88-109 27-48 (207)
360 2h17_A ADP-ribosylation factor 94.8 0.0095 3.2E-07 40.2 1.4 21 89-109 24-44 (181)
361 3bh0_A DNAB-like replicative h 94.8 0.024 8.1E-07 42.4 3.7 32 91-125 73-104 (315)
362 1p5z_B DCK, deoxycytidine kina 94.8 0.01 3.4E-07 43.0 1.5 20 91-110 29-48 (263)
363 2afh_E Nitrogenase iron protei 94.8 0.0096 3.3E-07 43.6 1.4 20 91-110 7-26 (289)
364 2pt7_A CAG-ALFA; ATPase, prote 94.7 0.011 3.7E-07 44.8 1.7 20 91-110 176-195 (330)
365 3gd7_A Fusion complex of cysti 94.7 0.0097 3.3E-07 46.3 1.5 19 91-109 52-70 (390)
366 2j0v_A RAC-like GTP-binding pr 94.7 0.011 3.7E-07 40.9 1.5 20 90-109 13-32 (212)
367 3cph_A RAS-related protein SEC 94.7 0.012 4.2E-07 40.4 1.8 21 89-109 23-43 (213)
368 2gco_A H9, RHO-related GTP-bin 94.7 0.011 3.8E-07 40.7 1.5 22 88-109 27-48 (201)
369 2b6h_A ADP-ribosylation factor 94.7 0.0099 3.4E-07 40.7 1.3 19 90-108 33-51 (192)
370 4gzl_A RAS-related C3 botulinu 94.7 0.011 3.8E-07 40.9 1.5 19 91-109 35-53 (204)
371 2qag_C Septin-7; cell cycle, c 94.7 0.012 4E-07 46.2 1.8 21 90-110 35-55 (418)
372 1oxx_K GLCV, glucose, ABC tran 94.7 0.0057 2E-07 46.9 0.0 20 91-110 36-55 (353)
373 3gj0_A GTP-binding nuclear pro 94.7 0.0099 3.4E-07 41.5 1.3 22 89-110 18-40 (221)
374 2xxa_A Signal recognition part 94.7 0.011 3.9E-07 46.4 1.7 20 91-110 105-124 (433)
375 2dr3_A UPF0273 protein PH0284; 94.6 0.011 3.7E-07 41.7 1.4 20 91-110 28-47 (247)
376 4dkx_A RAS-related protein RAB 94.6 0.017 6E-07 40.9 2.5 19 89-107 16-34 (216)
377 2qag_A Septin-2, protein NEDD5 94.6 0.013 4.3E-07 44.9 1.9 19 91-109 42-60 (361)
378 3cr8_A Sulfate adenylyltranfer 94.6 0.0073 2.5E-07 49.0 0.6 20 91-110 374-393 (552)
379 2hup_A RAS-related protein RAB 94.6 0.012 4E-07 40.7 1.5 21 89-109 32-52 (201)
380 2npi_A Protein CLP1; CLP1-PCF1 94.6 0.011 3.8E-07 46.9 1.6 20 91-110 143-162 (460)
381 1u94_A RECA protein, recombina 94.6 0.023 7.7E-07 43.6 3.3 33 91-126 68-100 (356)
382 2ewv_A Twitching motility prot 94.6 0.013 4.4E-07 45.1 1.9 20 91-110 141-160 (372)
383 2h92_A Cytidylate kinase; ross 94.6 0.013 4.4E-07 40.9 1.7 19 91-109 8-26 (219)
384 2qag_B Septin-6, protein NEDD5 94.6 0.012 4.1E-07 46.4 1.7 20 90-109 46-65 (427)
385 1f2t_A RAD50 ABC-ATPase; DNA d 94.6 0.014 4.8E-07 39.0 1.8 17 91-107 28-44 (149)
386 2zr9_A Protein RECA, recombina 94.6 0.021 7.1E-07 43.6 3.0 33 91-126 66-98 (349)
387 1bif_A 6-phosphofructo-2-kinas 94.5 0.014 4.7E-07 46.1 1.9 22 89-110 42-63 (469)
388 3p32_A Probable GTPase RV1496/ 94.5 0.013 4.4E-07 44.6 1.7 19 91-109 84-102 (355)
389 1u0l_A Probable GTPase ENGC; p 94.5 0.013 4.6E-07 43.5 1.7 20 91-110 174-193 (301)
390 3hu3_A Transitional endoplasmi 94.5 0.014 4.7E-07 46.6 1.9 20 91-110 243-262 (489)
391 3jvv_A Twitching mobility prot 94.5 0.014 4.8E-07 44.7 1.9 20 91-110 128-147 (356)
392 3sr0_A Adenylate kinase; phosp 94.5 0.016 5.4E-07 41.0 1.9 20 90-109 4-23 (206)
393 4b4t_I 26S protease regulatory 94.5 0.012 4.2E-07 46.4 1.5 20 91-110 221-240 (437)
394 1tue_A Replication protein E1; 94.4 0.011 3.8E-07 42.4 1.1 22 89-110 61-82 (212)
395 4dzz_A Plasmid partitioning pr 94.4 0.015 5.2E-07 39.9 1.8 18 93-110 9-26 (206)
396 3k1j_A LON protease, ATP-depen 94.4 0.014 5E-07 47.4 1.9 20 91-110 65-84 (604)
397 2g3y_A GTP-binding protein GEM 94.4 0.015 5.2E-07 41.0 1.7 20 89-108 40-59 (211)
398 1g41_A Heat shock protein HSLU 94.4 0.016 5.3E-07 45.9 1.9 22 89-110 53-74 (444)
399 3umf_A Adenylate kinase; rossm 94.4 0.017 5.9E-07 41.3 2.0 20 91-110 34-53 (217)
400 2xtz_A Guanine nucleotide-bind 94.4 0.011 3.7E-07 45.4 1.0 21 87-107 10-30 (354)
401 2rcn_A Probable GTPase ENGC; Y 94.4 0.015 5.1E-07 44.7 1.7 20 91-110 220-239 (358)
402 2dpy_A FLII, flagellum-specifi 94.4 0.014 4.7E-07 46.0 1.6 20 91-110 162-181 (438)
403 3u61_B DNA polymerase accessor 94.4 0.017 5.8E-07 42.8 2.0 20 91-110 53-72 (324)
404 3cwq_A Para family chromosome 94.4 0.016 5.5E-07 40.7 1.8 17 93-109 8-24 (209)
405 4djt_A GTP-binding nuclear pro 94.4 0.01 3.5E-07 41.1 0.8 19 90-108 15-33 (218)
406 3t5d_A Septin-7; GTP-binding p 94.3 0.013 4.5E-07 42.7 1.3 21 89-109 11-31 (274)
407 2x77_A ADP-ribosylation factor 94.3 0.011 3.8E-07 39.9 0.9 20 89-108 25-44 (189)
408 3ice_A Transcription terminati 94.3 0.024 8.1E-07 44.5 2.8 34 91-125 179-212 (422)
409 2yc2_C IFT27, small RAB-relate 94.3 0.008 2.7E-07 41.0 0.1 21 89-109 23-43 (208)
410 2xtp_A GTPase IMAP family memb 94.3 0.015 5.2E-07 41.7 1.5 21 89-109 25-45 (260)
411 2qm8_A GTPase/ATPase; G protei 94.2 0.016 5.6E-07 43.9 1.7 19 91-109 60-78 (337)
412 1ega_A Protein (GTP-binding pr 94.2 0.018 6E-07 42.9 1.9 19 91-109 13-31 (301)
413 3cpj_B GTP-binding protein YPT 94.2 0.018 6.2E-07 40.2 1.8 21 89-109 16-36 (223)
414 2axn_A 6-phosphofructo-2-kinas 94.2 0.018 6.1E-07 46.3 1.9 22 89-110 38-59 (520)
415 4edh_A DTMP kinase, thymidylat 94.2 0.038 1.3E-06 39.2 3.4 27 91-119 11-37 (213)
416 3kl4_A SRP54, signal recogniti 94.2 0.017 6E-07 45.5 1.8 20 91-110 102-121 (433)
417 3k53_A Ferrous iron transport 94.2 0.017 5.8E-07 42.0 1.6 19 91-109 8-26 (271)
418 1zcb_A G alpha I/13; GTP-bindi 94.2 0.017 6E-07 44.3 1.7 19 88-106 35-53 (362)
419 1yqt_A RNAse L inhibitor; ATP- 94.1 0.018 6E-07 46.5 1.8 20 91-110 52-71 (538)
420 2ffh_A Protein (FFH); SRP54, s 94.1 0.018 6.1E-07 45.3 1.7 20 91-110 103-122 (425)
421 1ypw_A Transitional endoplasmi 94.1 0.024 8.3E-07 47.8 2.6 20 91-110 516-535 (806)
422 3gmt_A Adenylate kinase; ssgci 94.1 0.021 7.1E-07 41.3 1.9 20 91-110 13-32 (230)
423 1pzn_A RAD51, DNA repair and r 94.0 0.017 5.8E-07 44.0 1.5 20 91-110 136-155 (349)
424 3lxw_A GTPase IMAP family memb 94.0 0.021 7.3E-07 41.1 1.9 21 89-109 24-44 (247)
425 1yqt_A RNAse L inhibitor; ATP- 94.0 0.02 6.9E-07 46.1 1.9 20 91-110 317-336 (538)
426 1a7j_A Phosphoribulokinase; tr 94.0 0.013 4.6E-07 43.4 0.8 20 91-110 10-29 (290)
427 1wf3_A GTP-binding protein; GT 94.0 0.021 7.3E-07 42.5 1.8 20 90-109 11-30 (301)
428 3th5_A RAS-related C3 botulinu 93.0 0.01 3.4E-07 40.8 0.0 19 90-108 34-52 (204)
429 3exa_A TRNA delta(2)-isopenten 93.9 0.023 7.7E-07 43.2 1.9 20 91-110 8-27 (322)
430 3ozx_A RNAse L inhibitor; ATP 93.9 0.021 7.1E-07 46.1 1.8 20 91-110 299-318 (538)
431 1g8f_A Sulfate adenylyltransfe 93.9 0.022 7.6E-07 45.8 2.0 22 89-110 398-419 (511)
432 2z43_A DNA repair and recombin 93.9 0.055 1.9E-06 40.5 4.1 36 91-126 112-150 (324)
433 2www_A Methylmalonic aciduria 93.9 0.021 7.1E-07 43.4 1.7 19 91-109 79-97 (349)
434 3zq6_A Putative arsenical pump 93.9 0.019 6.5E-07 43.1 1.5 20 91-110 19-38 (324)
435 3foz_A TRNA delta(2)-isopenten 93.9 0.023 7.7E-07 43.1 1.8 20 91-110 15-34 (316)
436 3k9g_A PF-32 protein; ssgcid, 93.9 0.022 7.6E-07 41.0 1.7 20 91-110 33-52 (267)
437 4dhe_A Probable GTP-binding pr 93.8 0.0095 3.2E-07 41.4 -0.3 21 89-109 32-52 (223)
438 3iev_A GTP-binding protein ERA 93.8 0.023 8E-07 42.3 1.8 19 91-109 15-33 (308)
439 2orw_A Thymidine kinase; TMTK, 93.8 0.023 8E-07 39.2 1.7 19 91-109 8-26 (184)
440 2ph1_A Nucleotide-binding prot 93.8 0.024 8.3E-07 40.9 1.8 20 91-110 24-43 (262)
441 3ozx_A RNAse L inhibitor; ATP 93.8 0.023 7.9E-07 45.8 1.8 20 91-110 30-49 (538)
442 2p67_A LAO/AO transport system 93.8 0.02 7E-07 43.2 1.4 19 91-109 61-79 (341)
443 1m8p_A Sulfate adenylyltransfe 93.7 0.026 8.8E-07 45.9 1.9 21 90-110 400-420 (573)
444 3cf2_A TER ATPase, transitiona 93.7 0.025 8.7E-07 47.8 1.9 20 91-110 243-262 (806)
445 3ug7_A Arsenical pump-driving 93.7 0.025 8.5E-07 43.0 1.7 20 91-110 31-50 (349)
446 1x6v_B Bifunctional 3'-phospho 93.6 0.026 8.9E-07 46.5 1.9 22 89-110 55-76 (630)
447 1p9r_A General secretion pathw 93.6 0.026 8.8E-07 44.2 1.9 20 91-110 172-191 (418)
448 3lv8_A DTMP kinase, thymidylat 93.6 0.048 1.6E-06 39.4 3.2 30 91-122 32-61 (236)
449 3b5x_A Lipid A export ATP-bind 93.6 0.025 8.4E-07 45.8 1.8 20 91-110 374-393 (582)
450 1h65_A Chloroplast outer envel 93.6 0.024 8.2E-07 41.2 1.5 21 90-110 43-63 (270)
451 3dm5_A SRP54, signal recogniti 93.6 0.025 8.6E-07 44.7 1.7 21 90-110 104-124 (443)
452 1tq4_A IIGP1, interferon-induc 93.6 0.024 8E-07 44.4 1.6 19 91-109 74-92 (413)
453 3bk7_A ABC transporter ATP-bin 93.6 0.026 8.8E-07 46.2 1.9 20 91-110 387-406 (607)
454 3euj_A Chromosome partition pr 93.6 0.026 8.8E-07 45.1 1.8 20 91-110 34-53 (483)
455 1qhl_A Protein (cell division 93.6 0.015 5.2E-07 41.9 0.4 20 91-110 32-51 (227)
456 3bk7_A ABC transporter ATP-bin 93.6 0.026 8.8E-07 46.2 1.8 20 91-110 122-141 (607)
457 3ea0_A ATPase, para family; al 93.6 0.028 9.4E-07 39.7 1.8 18 93-110 12-29 (245)
458 3b60_A Lipid A export ATP-bind 93.5 0.024 8.1E-07 45.9 1.5 20 91-110 374-393 (582)
459 3j16_B RLI1P; ribosome recycli 93.5 0.027 9.3E-07 46.1 1.9 20 91-110 108-127 (608)
460 3qks_A DNA double-strand break 93.5 0.029 1E-06 39.3 1.8 18 91-108 28-45 (203)
461 3r7w_A Gtpase1, GTP-binding pr 93.5 0.027 9.3E-07 41.9 1.7 21 89-109 6-26 (307)
462 1t9h_A YLOQ, probable GTPase E 93.5 0.0093 3.2E-07 44.9 -0.9 20 91-110 178-197 (307)
463 3io3_A DEHA2D07832P; chaperone 93.5 0.028 9.5E-07 42.9 1.7 20 91-110 23-42 (348)
464 2yl4_A ATP-binding cassette SU 93.4 0.025 8.4E-07 46.0 1.5 20 91-110 375-394 (595)
465 3hr8_A Protein RECA; alpha and 93.4 0.047 1.6E-06 41.9 3.0 33 91-126 66-98 (356)
466 2j37_W Signal recognition part 93.4 0.029 9.8E-07 45.0 1.7 21 90-110 105-125 (504)
467 2oap_1 GSPE-2, type II secreti 93.4 0.029 9.8E-07 45.0 1.7 20 91-110 265-284 (511)
468 3ld9_A DTMP kinase, thymidylat 93.3 0.034 1.2E-06 39.9 1.9 20 91-110 26-45 (223)
469 3v9p_A DTMP kinase, thymidylat 93.3 0.027 9.1E-07 40.5 1.4 20 91-110 30-49 (227)
470 1e69_A Chromosome segregation 93.3 0.027 9.3E-07 42.1 1.5 17 91-107 29-45 (322)
471 3l0i_B RAS-related protein RAB 93.3 0.011 3.8E-07 40.5 -0.6 20 90-109 37-56 (199)
472 3def_A T7I23.11 protein; chlor 93.3 0.029 9.8E-07 40.6 1.6 21 90-110 40-60 (262)
473 3j16_B RLI1P; ribosome recycli 93.3 0.03 1E-06 45.9 1.8 20 91-110 383-402 (608)
474 1xp8_A RECA protein, recombina 93.3 0.051 1.7E-06 41.8 3.0 33 91-126 79-111 (366)
475 3pxi_A Negative regulator of g 93.3 0.033 1.1E-06 46.3 2.0 22 89-110 524-545 (758)
476 3q9l_A Septum site-determining 93.2 0.033 1.1E-06 39.6 1.8 19 92-110 9-27 (260)
477 4a82_A Cystic fibrosis transme 93.2 0.025 8.6E-07 45.8 1.2 20 91-110 372-391 (578)
478 1v5w_A DMC1, meiotic recombina 93.2 0.1 3.4E-06 39.5 4.5 36 91-126 127-165 (343)
479 3qf4_B Uncharacterized ABC tra 93.2 0.029 9.8E-07 45.6 1.5 20 91-110 386-405 (598)
480 3b1v_A Ferrous iron uptake tra 93.2 0.034 1.2E-06 40.8 1.7 20 90-109 7-26 (272)
481 2woo_A ATPase GET3; tail-ancho 93.1 0.034 1.1E-06 41.9 1.7 20 91-110 24-43 (329)
482 2zts_A Putative uncharacterize 93.1 0.035 1.2E-06 39.0 1.7 18 91-108 35-53 (251)
483 3iqw_A Tail-anchored protein t 93.1 0.034 1.2E-06 42.2 1.7 20 91-110 21-40 (334)
484 3upu_A ATP-dependent DNA helic 93.1 0.071 2.4E-06 41.8 3.6 21 90-110 49-69 (459)
485 3lda_A DNA repair protein RAD5 93.1 0.031 1E-06 43.5 1.5 17 91-107 183-199 (400)
486 1mky_A Probable GTP-binding pr 93.1 0.035 1.2E-06 43.3 1.8 20 91-110 185-204 (439)
487 4hlc_A DTMP kinase, thymidylat 93.0 0.04 1.4E-06 38.8 1.9 20 91-110 7-26 (205)
488 2xj4_A MIPZ; replication, cell 93.0 0.038 1.3E-06 40.5 1.8 19 92-110 11-29 (286)
489 2e87_A Hypothetical protein PH 93.0 0.036 1.2E-06 42.0 1.7 21 90-110 171-191 (357)
490 1g3q_A MIND ATPase, cell divis 93.0 0.039 1.3E-06 38.8 1.8 19 92-110 9-27 (237)
491 2oze_A ORF delta'; para, walke 93.0 0.033 1.1E-06 40.7 1.4 18 93-110 44-61 (298)
492 2dby_A GTP-binding protein; GD 93.0 0.039 1.3E-06 42.5 1.8 20 90-109 5-24 (368)
493 3qf4_A ABC transporter, ATP-bi 92.9 0.033 1.1E-06 45.3 1.4 20 91-110 374-393 (587)
494 3iby_A Ferrous iron transport 92.9 0.038 1.3E-06 40.1 1.6 21 89-109 4-24 (256)
495 2o5v_A DNA replication and rep 92.8 0.04 1.4E-06 42.3 1.8 18 91-108 31-48 (359)
496 3a1s_A Iron(II) transport prot 92.8 0.044 1.5E-06 39.8 1.9 20 90-109 9-28 (258)
497 2woj_A ATPase GET3; tail-ancho 92.8 0.035 1.2E-06 42.3 1.5 20 91-110 23-42 (354)
498 1w1w_A Structural maintenance 92.8 0.041 1.4E-06 42.7 1.8 19 91-109 31-49 (430)
499 1tf7_A KAIC; homohexamer, hexa 92.8 0.035 1.2E-06 44.3 1.5 16 91-106 44-59 (525)
500 3hjn_A DTMP kinase, thymidylat 92.8 0.047 1.6E-06 38.2 1.9 20 91-110 5-24 (197)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.34 E-value=2e-13 Score=110.27 Aligned_cols=37 Identities=14% Similarity=-0.070 Sum_probs=33.8
Q ss_pred ccCcCCCchhHHHHhhhh--hhhhccCCCCeEEEEEeC-CC
Q 042811 91 PFGVEGVGKITSLSKSYP--EFLEDEGIFLIKMHDVVR-DM 128 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~--~~~~~~~~Fd~~~wv~VS-~~ 128 (130)
|+||||+||||||+.+|+ +. ++..+|+.++||+|| .+
T Consensus 157 I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~ 196 (549)
T 2a5y_B 157 LHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTA 196 (549)
T ss_dssp EECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCS
T ss_pred EEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCC
Confidence 999999999999999998 45 668899999999999 64
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=98.99 E-value=3.8e-11 Score=103.40 Aligned_cols=38 Identities=16% Similarity=-0.020 Sum_probs=34.5
Q ss_pred ccCcCCCchhHHHHhhhhhhhhccCCCCe-EEEEEeC-CCC
Q 042811 91 PFGVEGVGKITSLSKSYPEFLEDEGIFLI-KMHDVVR-DMS 129 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~~~~~~~Fd~-~~wv~VS-~~~ 129 (130)
|+||||+||||||+.+|++. ++..+|+. ++|++|| .++
T Consensus 155 IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d 194 (1221)
T 1vt4_I 155 IDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNS 194 (1221)
T ss_dssp ECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSS
T ss_pred EEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCC
Confidence 99999999999999999976 66789997 9999999 765
No 3
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.87 E-value=2e-10 Score=92.67 Aligned_cols=49 Identities=16% Similarity=0.051 Sum_probs=38.7
Q ss_pred CceeecccCCCCcc--------------ccCcCCCchhHHHHhhhhhhhhc-cCCC-CeEEEEEeC
Q 042811 77 TTKLGDVRRNGNNW--------------PFGVEGVGKITSLSKSYPEFLED-EGIF-LIKMHDVVR 126 (130)
Q Consensus 77 ~~ivG~~~~~~~l~--------------I~GmGGvGKTTLak~v~~~~~~~-~~~F-d~~~wv~VS 126 (130)
+.+|||+..++.+. |+||||+||||||+.++++. +. ..+| +.++|++++
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~ 188 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVG 188 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEE
T ss_pred CeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECC
Confidence 34689876433321 99999999999999999976 44 5789 589999998
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.85 E-value=3.7e-10 Score=96.72 Aligned_cols=51 Identities=14% Similarity=0.019 Sum_probs=38.3
Q ss_pred ceeecccCCCCcc--------------ccCcCCCchhHHHHhhhhhhhhccCCC-CeEEEEEeC-CC
Q 042811 78 TKLGDVRRNGNNW--------------PFGVEGVGKITSLSKSYPEFLEDEGIF-LIKMHDVVR-DM 128 (130)
Q Consensus 78 ~ivG~~~~~~~l~--------------I~GmGGvGKTTLak~v~~~~~~~~~~F-d~~~wv~VS-~~ 128 (130)
.++||+..++++. |+||||+||||||+++|++......+| +.++||+++ ++
T Consensus 125 ~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~ 191 (1249)
T 3sfz_A 125 IFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD 191 (1249)
T ss_dssp SCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC
T ss_pred eeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC
Confidence 4689986544432 999999999999999999862224445 577799998 54
No 5
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.47 E-value=5.5e-05 Score=52.68 Aligned_cols=34 Identities=24% Similarity=0.144 Sum_probs=25.3
Q ss_pred ccccCcCCCchhHHHHhhhhhhhhccCCCCeEEEEEe
Q 042811 89 NWPFGVEGVGKITSLSKSYPEFLEDEGIFLIKMHDVV 125 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~wv~V 125 (130)
+.|+|..|+||||||+.+++.. . .....++++..
T Consensus 57 ~~l~G~~GtGKT~la~~i~~~~-~--~~~~~~~~~~~ 90 (202)
T 2w58_A 57 LYLHGSFGVGKTYLLAAIANEL-A--KRNVSSLIVYV 90 (202)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH-H--TTTCCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHH-H--HcCCeEEEEEh
Confidence 4499999999999999999977 3 22334555553
No 6
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.35 E-value=2.2e-05 Score=53.19 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=19.2
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|+|..|+||||||+.+.+..
T Consensus 47 ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 47 VLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEECCTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 399999999999999998875
No 7
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.34 E-value=3.2e-05 Score=57.60 Aligned_cols=33 Identities=18% Similarity=0.120 Sum_probs=25.8
Q ss_pred ceeecccCCCCcc----------ccCcCCCchhHHHHhhhhhh
Q 042811 78 TKLGDVRRNGNNW----------PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 78 ~ivG~~~~~~~l~----------I~GmGGvGKTTLak~v~~~~ 110 (130)
.++||+..++.+. |+|+.|+|||||++.+.+..
T Consensus 13 ~~~gR~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 13 DIFDREEESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp GSCSCHHHHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred hcCChHHHHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 3588876544332 99999999999999998754
No 8
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.25 E-value=3.9e-05 Score=57.77 Aligned_cols=20 Identities=20% Similarity=0.458 Sum_probs=19.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+.+..
T Consensus 50 i~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 50 IYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp EEECTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999876
No 9
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.16 E-value=0.00015 Score=49.73 Aligned_cols=21 Identities=24% Similarity=0.224 Sum_probs=19.4
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|+|..|+|||||++.+.+..
T Consensus 42 ~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 42 TFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp EECCSSSSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 399999999999999999876
No 10
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.06 E-value=0.00019 Score=48.03 Aligned_cols=16 Identities=25% Similarity=0.175 Sum_probs=15.3
Q ss_pred ccCcCCCchhHHHHhh
Q 042811 91 PFGVEGVGKITSLSKS 106 (130)
Q Consensus 91 I~GmGGvGKTTLak~v 106 (130)
|.|+.|+||||+++.+
T Consensus 6 l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 6 ITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EECCTTSCHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 8999999999999987
No 11
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.06 E-value=0.0002 Score=48.68 Aligned_cols=22 Identities=14% Similarity=-0.079 Sum_probs=18.6
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
++|.|+.|+||||+++.+....
T Consensus 6 i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 6 IILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 3489999999999999987643
No 12
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.05 E-value=0.00027 Score=49.69 Aligned_cols=34 Identities=6% Similarity=-0.004 Sum_probs=24.9
Q ss_pred cccCcCCCchhHHHHhhhhhhhhccCCCCeEEEEEeC
Q 042811 90 WPFGVEGVGKITSLSKSYPEFLEDEGIFLIKMHDVVR 126 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~wv~VS 126 (130)
.|+|..|+||||||+.+.+.. .. ..+ .+.++..+
T Consensus 56 ll~G~~G~GKT~la~~l~~~~-~~-~~~-~~~~~~~~ 89 (242)
T 3bos_A 56 YLWGPVKSGRTHLIHAACARA-NE-LER-RSFYIPLG 89 (242)
T ss_dssp EEECSTTSSHHHHHHHHHHHH-HH-TTC-CEEEEEGG
T ss_pred EEECCCCCCHHHHHHHHHHHH-HH-cCC-eEEEEEHH
Confidence 399999999999999999876 32 223 34555544
No 13
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.03 E-value=0.00022 Score=54.38 Aligned_cols=20 Identities=25% Similarity=0.265 Sum_probs=18.8
Q ss_pred c--cCcCCCchhHHHHhhhhhh
Q 042811 91 P--FGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I--~GmGGvGKTTLak~v~~~~ 110 (130)
| +|++|+|||||++.+.+..
T Consensus 55 i~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 55 YGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp EECTTCCSSSHHHHHHHHHHHH
T ss_pred EeCcCcCCCCHHHHHHHHHHHH
Confidence 7 9999999999999999876
No 14
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.99 E-value=0.00026 Score=49.32 Aligned_cols=20 Identities=25% Similarity=0.204 Sum_probs=18.8
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+||||||+.+.+..
T Consensus 50 l~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 50 FSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp EECSTTSCHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 99999999999999998866
No 15
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.93 E-value=0.00033 Score=47.07 Aligned_cols=21 Identities=24% Similarity=-0.084 Sum_probs=17.9
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|.|+.|+||||+++.+...
T Consensus 4 i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 348899999999999998654
No 16
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.90 E-value=0.00027 Score=48.50 Aligned_cols=19 Identities=26% Similarity=0.071 Sum_probs=17.5
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|+|+.|+|||||++.+...
T Consensus 14 l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 14 LSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEECTTSCHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHHhc
Confidence 9999999999999999764
No 17
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.89 E-value=0.00035 Score=48.73 Aligned_cols=22 Identities=23% Similarity=0.134 Sum_probs=19.0
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|+|+.|+|||||++.+....
T Consensus 28 i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 28 IFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHc
Confidence 4499999999999999987654
No 18
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.86 E-value=0.00038 Score=47.01 Aligned_cols=21 Identities=24% Similarity=0.175 Sum_probs=18.2
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|.|+.|+|||||++.+...
T Consensus 7 i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 7 IFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 349999999999999998764
No 19
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.86 E-value=0.0006 Score=50.64 Aligned_cols=30 Identities=17% Similarity=0.142 Sum_probs=23.5
Q ss_pred ccCcCCCchhHHHHhhhhhhhhccCCCCeEEEEEeC
Q 042811 91 PFGVEGVGKITSLSKSYPEFLEDEGIFLIKMHDVVR 126 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~wv~VS 126 (130)
|+|+.|+|||||++.+.+.. . . ..+|+...
T Consensus 35 i~G~~G~GKT~L~~~~~~~~-~--~---~~~~~~~~ 64 (357)
T 2fna_A 35 VLGLRRTGKSSIIKIGINEL-N--L---PYIYLDLR 64 (357)
T ss_dssp EEESTTSSHHHHHHHHHHHH-T--C---CEEEEEGG
T ss_pred EECCCCCCHHHHHHHHHHhc-C--C---CEEEEEch
Confidence 99999999999999999875 2 2 24666543
No 20
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.82 E-value=0.00044 Score=47.26 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=18.8
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|+|+.|+||||+++.+....
T Consensus 8 i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 8 IYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4489999999999999987653
No 21
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.80 E-value=0.00045 Score=46.70 Aligned_cols=19 Identities=26% Similarity=0.281 Sum_probs=17.3
Q ss_pred cccCcCCCchhHHHHhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~ 108 (130)
.|.|+.|+||||+++.+..
T Consensus 6 ~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 6 LTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHh
Confidence 3899999999999999876
No 22
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.79 E-value=0.00034 Score=47.17 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=19.2
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|+|..|+||||||+.+.+..
T Consensus 47 ll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 47 ILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp EEESCGGGCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 399999999999999998876
No 23
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.79 E-value=0.00049 Score=46.98 Aligned_cols=22 Identities=27% Similarity=0.140 Sum_probs=18.9
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|.|+.|+||||+++.+....
T Consensus 14 i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 14 ILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHh
Confidence 4499999999999999987654
No 24
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.77 E-value=0.00049 Score=47.32 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+....
T Consensus 10 i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 10 LLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EECCTTSSHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHhhC
Confidence 89999999999999997754
No 25
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.77 E-value=0.00048 Score=51.81 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=19.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+||||||+.+.+..
T Consensus 49 l~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 49 LYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp ECBCTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999876
No 26
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.77 E-value=0.00051 Score=47.32 Aligned_cols=22 Identities=18% Similarity=0.123 Sum_probs=19.5
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|+|..|+||||||+.+.+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 3499999999999999998865
No 27
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=96.76 E-value=0.00099 Score=43.22 Aligned_cols=22 Identities=9% Similarity=0.092 Sum_probs=20.5
Q ss_pred chHHHHHHHHHHHHHHHHHhhh
Q 042811 3 RLHKIQMGLTRVQALETEVDNL 24 (130)
Q Consensus 3 ~~~~v~~Wl~~v~~~~~e~edi 24 (130)
.+++|+.|+++|++++||+||+
T Consensus 53 ~d~~vk~W~~~vrdlaYD~ED~ 74 (115)
T 3qfl_A 53 LDSQDKLWADEVRELSYVIEDV 74 (115)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999
No 28
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.75 E-value=0.00054 Score=47.23 Aligned_cols=19 Identities=32% Similarity=0.296 Sum_probs=16.8
Q ss_pred cccCcCCCchhHHHHhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~ 108 (130)
.|.|+.|+||||+++.+.+
T Consensus 4 ~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 4 AIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEECCTTSCHHHHHHHHHH
T ss_pred EEECCCccCHHHHHHHHHH
Confidence 3789999999999999866
No 29
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.74 E-value=0.00046 Score=52.19 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=19.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|.+|+||||||+.+.+..
T Consensus 50 l~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 50 FLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp EEECTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999875
No 30
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.73 E-value=0.00056 Score=46.67 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=18.7
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|.|+.|+||||+++.+.+..
T Consensus 7 ~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 7 VVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp EEECCTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 389999999999999998765
No 31
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.73 E-value=0.00072 Score=44.90 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=19.3
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|+|-.|+|||+||+.+++..
T Consensus 28 ll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 28 WLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp EEESSTTSSHHHHHHHHHHSS
T ss_pred EEECCCCCCHHHHHHHHHHhC
Confidence 499999999999999999865
No 32
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.70 E-value=0.00061 Score=47.39 Aligned_cols=22 Identities=23% Similarity=0.136 Sum_probs=18.9
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|.|..|+|||||++.+....
T Consensus 21 I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 21 IVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3499999999999999987754
No 33
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.69 E-value=0.00053 Score=46.17 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=19.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+.+..
T Consensus 41 l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 41 VWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp EESSSTTTTCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999977
No 34
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.69 E-value=0.0006 Score=50.89 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=20.0
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|+|..|+||||||+.+.+..
T Consensus 40 lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 40 IFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 3499999999999999999976
No 35
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.69 E-value=0.00056 Score=46.67 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=18.6
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|.|+.|+||||+++.+.+..
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 3488999999999999987654
No 36
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.68 E-value=0.0006 Score=47.68 Aligned_cols=20 Identities=45% Similarity=0.571 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|+.|+|||||++.+....
T Consensus 17 l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 17 VCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp EECCTTSCHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHHhC
Confidence 89999999999999997754
No 37
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.68 E-value=0.00063 Score=46.13 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=17.7
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|.|+.|+|||||++.+...
T Consensus 12 ~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 12 VLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEECSTTSCHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHh
Confidence 39999999999999998764
No 38
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.67 E-value=0.00066 Score=46.17 Aligned_cols=23 Identities=26% Similarity=0.180 Sum_probs=19.2
Q ss_pred CccccCcCCCchhHHHHhhhhhh
Q 042811 88 NNWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 88 ~l~I~GmGGvGKTTLak~v~~~~ 110 (130)
.+.|.|+.|+||||+++.+....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 34599999999999999987653
No 39
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.66 E-value=0.00062 Score=46.82 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=16.5
Q ss_pred ccCcCCCchhHHHHhhhh
Q 042811 91 PFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~ 108 (130)
|.|..|+|||||++.+..
T Consensus 7 l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 7 ITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHhc
Confidence 899999999999999865
No 40
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.65 E-value=0.00068 Score=47.00 Aligned_cols=19 Identities=37% Similarity=0.371 Sum_probs=16.5
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|+|..|+|||||++.+...
T Consensus 5 l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 5 ITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EECCTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 7899999999999987543
No 41
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.64 E-value=0.00067 Score=49.48 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=19.1
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|+|..|+||||||+.+.+..
T Consensus 55 ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 55 LLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp EEESSSSSSHHHHHHHHHHHT
T ss_pred EEECCCCCcHHHHHHHHHHHh
Confidence 499999999999999998865
No 42
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.64 E-value=0.00068 Score=47.28 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=18.8
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|.|+.|+|||||++.+....
T Consensus 29 ~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 29 WVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp EEECSTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 399999999999999998765
No 43
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.61 E-value=0.00067 Score=46.43 Aligned_cols=21 Identities=19% Similarity=0.052 Sum_probs=18.2
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|.|+.|+||||+++.+....
T Consensus 9 ~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 9 IVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEESTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHc
Confidence 389999999999999987653
No 44
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.61 E-value=0.00076 Score=47.02 Aligned_cols=20 Identities=35% Similarity=0.343 Sum_probs=17.9
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|+.|+|||||++.+....
T Consensus 34 l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 34 VMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp EECCTTSCHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHhh
Confidence 99999999999999987643
No 45
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.60 E-value=0.0008 Score=46.19 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=19.0
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|.|+.|+||||+++.+....
T Consensus 17 ~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 17 WLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp EEECCTTSSHHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHH
Confidence 399999999999999998865
No 46
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.59 E-value=0.00078 Score=48.31 Aligned_cols=22 Identities=23% Similarity=0.185 Sum_probs=19.6
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|+|..|+||||||+.+.+..
T Consensus 42 vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 42 ALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3499999999999999999865
No 47
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.55 E-value=0.00079 Score=45.99 Aligned_cols=17 Identities=35% Similarity=0.487 Sum_probs=15.3
Q ss_pred ccCcCCCchhHHHHhhh
Q 042811 91 PFGVEGVGKITSLSKSY 107 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~ 107 (130)
|+|..|+|||||++.++
T Consensus 14 l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 14 LIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EECCTTSCHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHc
Confidence 89999999999999644
No 48
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.54 E-value=0.0021 Score=48.38 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.9
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|+|..|+|||||++.+.+..
T Consensus 47 ~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 47 ATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 3499999999999999999876
No 49
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.54 E-value=0.00087 Score=46.38 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=17.9
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.+....
T Consensus 11 l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 11 LSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EECSTTSCHHHHHHHHHHCT
T ss_pred EECCCCCCHHHHHHHHHHhh
Confidence 89999999999999987654
No 50
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.54 E-value=0.00084 Score=50.68 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=19.9
Q ss_pred CccccCcCCCchhHHHHhhhhhh
Q 042811 88 NNWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 88 ~l~I~GmGGvGKTTLak~v~~~~ 110 (130)
.+.++|..|+||||||+.+.+..
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 34499999999999999998865
No 51
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.51 E-value=0.0013 Score=47.55 Aligned_cols=22 Identities=23% Similarity=0.102 Sum_probs=19.8
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|+|..|+||||||+.+.+..
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 4599999999999999999865
No 52
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.51 E-value=0.00091 Score=48.12 Aligned_cols=22 Identities=27% Similarity=0.164 Sum_probs=19.5
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|+|..|+|||||++.+.+..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3499999999999999998865
No 53
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.51 E-value=0.0009 Score=46.96 Aligned_cols=20 Identities=25% Similarity=0.190 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.+....
T Consensus 27 I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 27 LSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp EECCTTSCTHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 89999999999999998765
No 54
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.51 E-value=0.00094 Score=46.20 Aligned_cols=19 Identities=16% Similarity=0.111 Sum_probs=17.5
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|.|..|+|||||++.+...
T Consensus 12 l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 12 ISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EECCTTSCHHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHHhh
Confidence 8999999999999998764
No 55
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.50 E-value=0.00092 Score=48.19 Aligned_cols=22 Identities=23% Similarity=0.089 Sum_probs=19.6
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|+|..|+||||||+.+.+..
T Consensus 48 vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHc
Confidence 3499999999999999999865
No 56
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.50 E-value=0.00091 Score=46.80 Aligned_cols=19 Identities=42% Similarity=0.504 Sum_probs=17.4
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|+|..|+|||||++.+...
T Consensus 9 lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 9 LSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp EECCTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHhh
Confidence 8999999999999999764
No 57
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.49 E-value=0.00098 Score=48.51 Aligned_cols=20 Identities=20% Similarity=0.156 Sum_probs=17.1
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|.|+.|+||||||+.+...
T Consensus 5 ~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 5 LIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEECCTTSSHHHHHHHHHHH
T ss_pred EEECCCCcCHHHHHHHHHhc
Confidence 38999999999999987543
No 58
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.48 E-value=0.0012 Score=48.50 Aligned_cols=22 Identities=27% Similarity=0.057 Sum_probs=19.4
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|+|..|+||||||+.+.+..
T Consensus 70 vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 70 MSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp EEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 3599999999999999888766
No 59
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.45 E-value=0.001 Score=52.32 Aligned_cols=22 Identities=23% Similarity=0.224 Sum_probs=19.9
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|+|..|+||||||+.+.+..
T Consensus 133 lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 133 LFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 3399999999999999999976
No 60
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.45 E-value=0.001 Score=47.86 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=18.2
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|+|..|+|||||++.+.+..
T Consensus 31 ~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 31 VILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp EEECCTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 399999999999999998543
No 61
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.44 E-value=0.0012 Score=49.02 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=19.2
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.++|..|+|||+||+.|.+..
T Consensus 40 Ll~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 40 GIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp EEEECTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999876
No 62
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.42 E-value=0.0012 Score=45.04 Aligned_cols=20 Identities=35% Similarity=0.305 Sum_probs=17.5
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|.|+.|+||||+++.+.+.
T Consensus 8 ~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 8 IFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEECCTTSCHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 38999999999999998754
No 63
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.41 E-value=0.0011 Score=48.25 Aligned_cols=21 Identities=29% Similarity=0.200 Sum_probs=18.8
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|.|+.|+||||+++.+....
T Consensus 8 vl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 8 ILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp EEECCTTSSHHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHH
Confidence 489999999999999998764
No 64
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.40 E-value=0.0011 Score=46.10 Aligned_cols=18 Identities=28% Similarity=0.045 Sum_probs=15.9
Q ss_pred cccCcCCCchhHHHHhhh
Q 042811 90 WPFGVEGVGKITSLSKSY 107 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~ 107 (130)
.|.|+.|+||||+++.+.
T Consensus 5 ~i~G~~GsGKSTl~~~L~ 22 (204)
T 2if2_A 5 GLTGNIGCGKSTVAQMFR 22 (204)
T ss_dssp EEEECTTSSHHHHHHHHH
T ss_pred EEECCCCcCHHHHHHHHH
Confidence 389999999999999864
No 65
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.39 E-value=0.0012 Score=45.36 Aligned_cols=21 Identities=24% Similarity=0.180 Sum_probs=18.3
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|.|+.|+||||+++.+.+.
T Consensus 13 I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 13 ILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 349999999999999998765
No 66
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.39 E-value=0.0013 Score=44.92 Aligned_cols=21 Identities=24% Similarity=0.166 Sum_probs=18.1
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|.|+.|+||||+++.+...
T Consensus 5 I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 5 AVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 448999999999999998664
No 67
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.39 E-value=0.0013 Score=44.22 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=18.2
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|.|+.|+||||+++.+.+.
T Consensus 5 I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 5 IFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 448999999999999998664
No 68
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.38 E-value=0.0013 Score=44.84 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=16.9
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|.|+.|+||||+++.+...
T Consensus 8 l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 8 VLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EECCTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 8999999999999988654
No 69
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.38 E-value=0.0012 Score=48.64 Aligned_cols=22 Identities=23% Similarity=0.069 Sum_probs=19.5
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|+|..|+||||||+.+.+..
T Consensus 47 vlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHc
Confidence 4589999999999999998864
No 70
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.37 E-value=0.0012 Score=48.38 Aligned_cols=22 Identities=27% Similarity=0.205 Sum_probs=19.5
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|+|..|+||||||+.+.+..
T Consensus 57 vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 57 LLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp EEEESSSSSCHHHHHHHHHHHT
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 3499999999999999998865
No 71
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.37 E-value=0.0013 Score=45.47 Aligned_cols=21 Identities=19% Similarity=0.104 Sum_probs=18.9
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|.|+.|+||||+++.+....
T Consensus 8 ~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 8 AFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEECCTTSSHHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHH
Confidence 389999999999999998865
No 72
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.36 E-value=0.0013 Score=46.21 Aligned_cols=20 Identities=25% Similarity=0.018 Sum_probs=17.6
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|.|..|+||||+++.+...
T Consensus 9 ~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 9 TIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp EEECCTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 39999999999999998654
No 73
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.36 E-value=0.00068 Score=50.64 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=18.9
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|+|..|+||||||+.+.+..
T Consensus 62 ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 62 LFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp EEECSTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 399999999999999998864
No 74
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.35 E-value=0.00096 Score=45.34 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=14.2
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|.|+.|+||||+++.+.+..
T Consensus 9 ~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 9 WINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp EEECCC----CHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHHhc
Confidence 389999999999999987653
No 75
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.35 E-value=0.0013 Score=45.35 Aligned_cols=20 Identities=40% Similarity=0.566 Sum_probs=17.5
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.+....
T Consensus 6 l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 6 ISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EESSSSSSHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHhhC
Confidence 78999999999999987543
No 76
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.34 E-value=0.0014 Score=43.87 Aligned_cols=20 Identities=25% Similarity=0.036 Sum_probs=17.0
Q ss_pred ccccCcCCCchhHHHHhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~ 108 (130)
+.|.|+.|+||||+++.+.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 34789999999999998765
No 77
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.34 E-value=0.0013 Score=47.80 Aligned_cols=20 Identities=25% Similarity=0.049 Sum_probs=18.7
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+||||||+.+.+..
T Consensus 69 l~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 69 LEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp EECSTTSSHHHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHHHh
Confidence 99999999999999998864
No 78
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.33 E-value=0.0014 Score=45.98 Aligned_cols=20 Identities=25% Similarity=0.154 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+..-.
T Consensus 25 l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 25 LSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EECSTTSSHHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHhhC
Confidence 99999999999999987754
No 79
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.33 E-value=0.0013 Score=48.82 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=19.2
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|+|..|+||||||+.+.+..
T Consensus 53 LL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 53 LFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp EEECSSSSSHHHHHHHHHHHT
T ss_pred EEECCCCcCHHHHHHHHHHHh
Confidence 499999999999999999865
No 80
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.33 E-value=0.0013 Score=47.28 Aligned_cols=20 Identities=25% Similarity=0.169 Sum_probs=17.6
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|.||+|||||+..+....
T Consensus 19 ~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 19 FVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp EECSTTSSHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999987544
No 81
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.32 E-value=0.0013 Score=48.74 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=19.6
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|+|..|+||||||+.+.+..
T Consensus 41 vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 41 LLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CEEECCTTCCCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3499999999999999998865
No 82
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.31 E-value=0.0014 Score=48.72 Aligned_cols=21 Identities=29% Similarity=0.230 Sum_probs=18.6
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
+|.|+.|+|||||++.+.+..
T Consensus 37 vl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 37 LLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEECCTTSCTHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 499999999999999997754
No 83
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.31 E-value=0.0014 Score=47.95 Aligned_cols=21 Identities=29% Similarity=0.207 Sum_probs=19.0
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|+|..|+|||||++.+.+..
T Consensus 77 ll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 77 LLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEECCTTSSHHHHHHHHHHHT
T ss_pred EEECCCcChHHHHHHHHHHHc
Confidence 399999999999999998865
No 84
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.31 E-value=0.0016 Score=43.91 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=19.9
Q ss_pred CCccccCcCCCchhHHHHhhhhhh
Q 042811 87 GNNWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 87 ~~l~I~GmGGvGKTTLak~v~~~~ 110 (130)
..+.|.|+.|+||||+++.+.+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 344589999999999999987754
No 85
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.30 E-value=0.001 Score=44.11 Aligned_cols=22 Identities=14% Similarity=-0.183 Sum_probs=19.4
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|+|-.|+|||+||+.+++..
T Consensus 30 vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCTT
T ss_pred EEEECCCCccHHHHHHHHHHhC
Confidence 3499999999999999999864
No 86
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.30 E-value=0.0013 Score=45.88 Aligned_cols=20 Identities=20% Similarity=0.047 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.+....
T Consensus 11 i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 11 IAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 89999999999999987754
No 87
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.28 E-value=0.0015 Score=46.36 Aligned_cols=20 Identities=45% Similarity=0.517 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+....
T Consensus 28 lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 28 ICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp EECSTTSSHHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHhhC
Confidence 99999999999999987743
No 88
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.26 E-value=0.0016 Score=45.13 Aligned_cols=22 Identities=27% Similarity=0.232 Sum_probs=18.9
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|.|+.|+||||+++.+....
T Consensus 23 I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 23 VLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3499999999999999987754
No 89
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.26 E-value=0.0015 Score=44.81 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|+.|+||||+++.+.+..
T Consensus 14 l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 14 VVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp EEECTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 99999999999999987654
No 90
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.24 E-value=0.0017 Score=48.74 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=20.1
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|+|..|+|||+||+.+.+..
T Consensus 155 lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 155 LYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4499999999999999999977
No 91
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.22 E-value=0.0017 Score=45.45 Aligned_cols=20 Identities=35% Similarity=0.401 Sum_probs=17.7
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+....
T Consensus 6 i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 6 LTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp EESCCSSCHHHHHHHHHHHH
T ss_pred EECCCCChHHHHHHHHHhhc
Confidence 89999999999999987654
No 92
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.21 E-value=0.0015 Score=45.47 Aligned_cols=19 Identities=26% Similarity=0.163 Sum_probs=17.5
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|.|..|+|||||++.+...
T Consensus 26 i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 26 ISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEESTTSSHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 9999999999999998764
No 93
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.20 E-value=0.0035 Score=43.34 Aligned_cols=21 Identities=24% Similarity=0.150 Sum_probs=18.8
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|.|..|+|||||+..+....
T Consensus 8 ~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 8 QVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp EEECCTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHhh
Confidence 389999999999999998865
No 94
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.19 E-value=0.0018 Score=48.70 Aligned_cols=22 Identities=27% Similarity=0.196 Sum_probs=19.6
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
++|+|..|+||||||+.+.+..
T Consensus 48 iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 48 ILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp EEEESSSSSCHHHHHHHHHHHT
T ss_pred EEEECCCCccHHHHHHHHHHHc
Confidence 3499999999999999999865
No 95
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.17 E-value=0.0018 Score=45.55 Aligned_cols=20 Identities=30% Similarity=0.280 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.+....
T Consensus 13 l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 13 LSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EECCTTSCHHHHHHHHHHST
T ss_pred EECcCCCCHHHHHHHHHhhC
Confidence 89999999999999997754
No 96
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.17 E-value=0.0018 Score=45.06 Aligned_cols=18 Identities=28% Similarity=0.073 Sum_probs=16.2
Q ss_pred ccCcCCCchhHHHHhhhh
Q 042811 91 PFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~ 108 (130)
|.|+.|+||||+++.+..
T Consensus 7 l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 7 LTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EECSTTSCHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 899999999999999854
No 97
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.17 E-value=0.0019 Score=45.43 Aligned_cols=21 Identities=29% Similarity=0.290 Sum_probs=18.2
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|.|+.|+||||+++.+.+..
T Consensus 8 ~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 8 VLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp EEECCTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHc
Confidence 389999999999999987654
No 98
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.16 E-value=0.002 Score=43.69 Aligned_cols=21 Identities=29% Similarity=0.302 Sum_probs=18.5
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|+|..|+|||||++.+.+.+
T Consensus 18 ~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 18 VYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEECSTTSSHHHHHHHHHHTS
T ss_pred EEECCCCCCHHHHHHHHHhhc
Confidence 399999999999998887755
No 99
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.15 E-value=0.0019 Score=47.25 Aligned_cols=22 Identities=23% Similarity=0.207 Sum_probs=18.7
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|+|+.|+|||||++.+....
T Consensus 51 i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 51 MYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 3499999999999999987643
No 100
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.15 E-value=0.00065 Score=53.75 Aligned_cols=32 Identities=19% Similarity=0.192 Sum_probs=25.0
Q ss_pred eeecccCCCCc------------cccCcCCCchhHHHHhhhhhh
Q 042811 79 KLGDVRRNGNN------------WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 79 ivG~~~~~~~l------------~I~GmGGvGKTTLak~v~~~~ 110 (130)
++|++..++.+ +|+|-.|+||||||+.+.+..
T Consensus 182 iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 182 VIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 58877543332 299999999999999998865
No 101
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.15 E-value=0.002 Score=48.16 Aligned_cols=22 Identities=27% Similarity=0.134 Sum_probs=19.3
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|+|..|+||||||+.+.+..
T Consensus 58 vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 58 ILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 3499999999999999998764
No 102
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.15 E-value=0.002 Score=44.66 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=18.6
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|.|+.|+||||+++.+.+..
T Consensus 18 I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 18 IFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 3489999999999999987643
No 103
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.14 E-value=0.0021 Score=43.85 Aligned_cols=19 Identities=37% Similarity=0.471 Sum_probs=16.9
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|.|+.|+||||+++.+.+.
T Consensus 5 l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 5 FEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EECSTTSCHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 6899999999999998763
No 104
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.14 E-value=0.0019 Score=45.85 Aligned_cols=18 Identities=28% Similarity=0.169 Sum_probs=16.7
Q ss_pred ccCcCCCchhHHHHhhhh
Q 042811 91 PFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~ 108 (130)
|+|..|+|||||++.+..
T Consensus 35 l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 35 LTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHH
Confidence 999999999999998873
No 105
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.14 E-value=0.0017 Score=45.98 Aligned_cols=21 Identities=33% Similarity=0.344 Sum_probs=18.2
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|.|+.|+||||+++.+....
T Consensus 11 ~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 11 VIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp EEEECTTSSHHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHHHc
Confidence 399999999999999987643
No 106
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.13 E-value=0.0018 Score=44.40 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=18.5
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|.|+.|+||||+++.+....
T Consensus 16 ~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 16 FIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp EEEECTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 389999999999999997754
No 107
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.13 E-value=0.0021 Score=45.11 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=18.7
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|.|+.|+||||+++.+....
T Consensus 29 ~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 29 WLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp EEECSTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 389999999999999998765
No 108
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.11 E-value=0.0021 Score=46.01 Aligned_cols=20 Identities=15% Similarity=0.096 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+....
T Consensus 21 l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 21 VSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EECCTTSCHHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHhccC
Confidence 99999999999999998754
No 109
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.10 E-value=0.0021 Score=47.22 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=19.4
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|+|..|+||||||+.+.+..
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 3499999999999999998865
No 110
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.10 E-value=0.0019 Score=45.49 Aligned_cols=22 Identities=18% Similarity=0.066 Sum_probs=19.0
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|.|+.|+||||+++.+.+..
T Consensus 8 I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 8 VMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999997765
No 111
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.10 E-value=0.0021 Score=47.27 Aligned_cols=21 Identities=33% Similarity=0.271 Sum_probs=19.0
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.++|..|+||||+|+.+.+..
T Consensus 50 ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 50 LFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp EEESCTTSSHHHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHHHh
Confidence 399999999999999998864
No 112
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.09 E-value=0.0023 Score=44.78 Aligned_cols=20 Identities=25% Similarity=0.235 Sum_probs=16.7
Q ss_pred ccccCcCCCchhHHHHhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~ 108 (130)
+.|.|+.|+||||+++.+..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 34789999999999998843
No 113
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.09 E-value=0.0021 Score=48.11 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=19.6
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.++|..|+|||+||+.+.+..
T Consensus 54 vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 54 ILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp EEEECSSSSCHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 3499999999999999998865
No 114
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.08 E-value=0.0021 Score=48.24 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=18.8
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|+|.+|+|||||++.+..-.
T Consensus 106 ~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 106 LVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp EEECSTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHHHH
Confidence 399999999999999998765
No 115
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.07 E-value=0.0023 Score=43.57 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=18.4
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|.|+.|+||||+++.+....
T Consensus 9 ~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 9 WLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEECCTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 389999999999999997754
No 116
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.07 E-value=0.0021 Score=46.38 Aligned_cols=20 Identities=30% Similarity=0.091 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+..-.
T Consensus 36 iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 36 IMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EECSTTSSHHHHHHHHTTSS
T ss_pred EECCCCCcHHHHHHHHhcCC
Confidence 99999999999999987643
No 117
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.06 E-value=0.0021 Score=46.58 Aligned_cols=19 Identities=26% Similarity=0.020 Sum_probs=17.2
Q ss_pred cccCcCCCchhHHHHhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~ 108 (130)
.|.|+.|+|||||++.+..
T Consensus 31 ~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 31 TVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3999999999999999874
No 118
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.05 E-value=0.002 Score=46.16 Aligned_cols=20 Identities=30% Similarity=0.062 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+..-.
T Consensus 35 iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 35 IIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEECTTSCHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 99999999999999987643
No 119
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.05 E-value=0.0022 Score=43.64 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=18.2
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|.|+.|+||||+++.+....
T Consensus 10 ~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 10 FVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEESTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 389999999999999987653
No 120
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.04 E-value=0.002 Score=45.14 Aligned_cols=19 Identities=26% Similarity=0.165 Sum_probs=17.5
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|+|..|+|||||++.+...
T Consensus 30 l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 30 VFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEESTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 9999999999999999763
No 121
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.04 E-value=0.0021 Score=42.01 Aligned_cols=21 Identities=24% Similarity=0.183 Sum_probs=17.9
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.++|.+|+|||||+..+.+.
T Consensus 6 i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 348999999999999998654
No 122
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.04 E-value=0.0021 Score=44.86 Aligned_cols=20 Identities=20% Similarity=0.135 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.+....
T Consensus 27 i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 27 IDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp EEECTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 89999999999999988754
No 123
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.04 E-value=0.0024 Score=44.80 Aligned_cols=21 Identities=38% Similarity=0.498 Sum_probs=17.9
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|.|..|+|||||++.+....
T Consensus 5 Vi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 5 VISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEECCTTSSHHHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHHHhC
Confidence 389999999999999986553
No 124
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.03 E-value=0.0024 Score=44.70 Aligned_cols=20 Identities=25% Similarity=0.192 Sum_probs=16.7
Q ss_pred ccccCcCCCchhHHHHhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~ 108 (130)
+.|.|+.|+||||+++.+..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 34789999999999998743
No 125
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.02 E-value=0.0023 Score=43.52 Aligned_cols=20 Identities=30% Similarity=0.265 Sum_probs=17.5
Q ss_pred ccccCcCCCchhHHHHhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~ 108 (130)
+.|+|.+|+|||||++.+.+
T Consensus 5 v~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 34899999999999999876
No 126
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.02 E-value=0.0025 Score=43.37 Aligned_cols=20 Identities=25% Similarity=0.132 Sum_probs=17.9
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|.|||||++.+..-.
T Consensus 38 L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 38 LNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EECSTTSSHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHhC
Confidence 89999999999999987754
No 127
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.00 E-value=0.0026 Score=43.00 Aligned_cols=20 Identities=30% Similarity=0.202 Sum_probs=17.8
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|..|+|||||+..+.+.
T Consensus 11 ~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 11 ALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEECSTTSSHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHhCC
Confidence 39999999999999998763
No 128
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.00 E-value=0.0023 Score=44.06 Aligned_cols=19 Identities=37% Similarity=0.408 Sum_probs=17.4
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|+|..|+|||||++.+.+.
T Consensus 34 lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 34 LIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEECTTSSHHHHHHHHHHS
T ss_pred EECcCCCCHHHHHHHHhcC
Confidence 9999999999999998764
No 129
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.00 E-value=0.0023 Score=44.88 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=17.9
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|+|.+|+|||||+..+.+..
T Consensus 42 ~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 42 DFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEESTTSSHHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHh
Confidence 488999999999999887653
No 130
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.99 E-value=0.0025 Score=46.05 Aligned_cols=20 Identities=35% Similarity=0.413 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+..-.
T Consensus 36 i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 36 VVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EECSTTSSHHHHHHHHTTCS
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 99999999999999997754
No 131
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.99 E-value=0.0026 Score=41.90 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=17.6
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|.+|+|||||+..+.+.
T Consensus 9 ~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 9 VVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEECSTTSSHHHHHHHHHHC
T ss_pred EEECcCCCCHHHHHHHHHcC
Confidence 48999999999999998664
No 132
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.98 E-value=0.0026 Score=43.79 Aligned_cols=19 Identities=37% Similarity=0.408 Sum_probs=17.4
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|+|..|+|||||++.+.+.
T Consensus 10 lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 10 LIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EESSTTSSHHHHHHHHHHS
T ss_pred EECcCCCCHHHHHHHHhcC
Confidence 8999999999999998765
No 133
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.97 E-value=0.0028 Score=43.41 Aligned_cols=19 Identities=26% Similarity=0.260 Sum_probs=17.0
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|.|..|+||||+++.+.+.
T Consensus 5 l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 5 FEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EECSTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 6799999999999998765
No 134
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.97 E-value=0.0026 Score=46.15 Aligned_cols=20 Identities=25% Similarity=0.172 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+..-.
T Consensus 29 liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 29 LLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EECCTTSSHHHHHHHHHTSS
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999987643
No 135
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.97 E-value=0.0027 Score=41.61 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=17.9
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 448999999999999998654
No 136
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.97 E-value=0.0024 Score=44.27 Aligned_cols=28 Identities=14% Similarity=0.031 Sum_probs=22.1
Q ss_pred cccCcCCCchhHHHHhhhhhhhhccCCCCe
Q 042811 90 WPFGVEGVGKITSLSKSYPEFLEDEGIFLI 119 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~~~~~~~Fd~ 119 (130)
.|.|+.|+||||+++.+.+.. .. ..++.
T Consensus 14 ~l~G~~GsGKST~~~~L~~~l-~~-~~~~~ 41 (212)
T 2wwf_A 14 VFEGLDRSGKSTQSKLLVEYL-KN-NNVEV 41 (212)
T ss_dssp EEEESTTSSHHHHHHHHHHHH-HH-TTCCE
T ss_pred EEEcCCCCCHHHHHHHHHHHH-HH-cCCcE
Confidence 399999999999999998865 32 35554
No 137
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.97 E-value=0.0026 Score=42.52 Aligned_cols=20 Identities=30% Similarity=0.202 Sum_probs=17.5
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|.+|+|||||++.+.+.
T Consensus 7 ~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 7 ALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEECSTTSSHHHHHHHHHCC
T ss_pred EEECCCCCCHHHHHHHHhCC
Confidence 38999999999999998663
No 138
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.97 E-value=0.0019 Score=46.81 Aligned_cols=22 Identities=32% Similarity=0.231 Sum_probs=19.0
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
++|.|..|+||||+++.+....
T Consensus 35 i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 35 ILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEESCGGGTTHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 3489999999999999997754
No 139
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.97 E-value=0.0027 Score=43.09 Aligned_cols=21 Identities=24% Similarity=0.183 Sum_probs=18.2
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|.+|+|||||+..+.+.
T Consensus 24 i~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 449999999999999998654
No 140
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.96 E-value=0.0025 Score=44.28 Aligned_cols=28 Identities=21% Similarity=0.032 Sum_probs=22.0
Q ss_pred cccCcCCCchhHHHHhhhhhhhhccCCCCe
Q 042811 90 WPFGVEGVGKITSLSKSYPEFLEDEGIFLI 119 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~~~~~~~Fd~ 119 (130)
.|.|+.|+||||+++.+.+.. .. ..++.
T Consensus 13 ~l~G~~GsGKsT~~~~L~~~l-~~-~~~~v 40 (215)
T 1nn5_A 13 VLEGVDRAGKSTQSRKLVEAL-CA-AGHRA 40 (215)
T ss_dssp EEEESTTSSHHHHHHHHHHHH-HH-TTCCE
T ss_pred EEECCCCCCHHHHHHHHHHHH-HH-cCCcE
Confidence 399999999999999998865 32 34554
No 141
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.95 E-value=0.0023 Score=44.03 Aligned_cols=18 Identities=28% Similarity=0.119 Sum_probs=16.5
Q ss_pred ccCcCCCchhHHHHhhhh
Q 042811 91 PFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~ 108 (130)
|.|+.|+||||+++.+-.
T Consensus 13 i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 13 ITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp EEECTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999998765
No 142
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.95 E-value=0.0024 Score=48.08 Aligned_cols=20 Identities=20% Similarity=0.149 Sum_probs=19.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+||||||+.+.+..
T Consensus 75 l~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 75 IAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 99999999999999999876
No 143
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.94 E-value=0.0027 Score=46.39 Aligned_cols=20 Identities=25% Similarity=0.217 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+..-.
T Consensus 38 liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 38 IIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EECSTTSSHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999987644
No 144
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.94 E-value=0.0028 Score=43.69 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|+.|+||||+++.+.+..
T Consensus 9 l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 9 FEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EECCTTSSHHHHHHHHHHTS
T ss_pred EEcCCCCCHHHHHHHHHHHH
Confidence 89999999999999997754
No 145
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.93 E-value=0.00087 Score=53.76 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=19.2
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|+|..|+|||+||+.+.+..
T Consensus 45 LL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 45 FLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp EEECCSSSSHHHHHHHGGGGB
T ss_pred EeecCchHHHHHHHHHHHHHH
Confidence 399999999999999999865
No 146
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.93 E-value=0.0025 Score=45.22 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=17.6
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|+|..|+|||||++.+..-
T Consensus 27 liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 27 GLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EECCTTSSTTHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 8999999999999998765
No 147
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.93 E-value=0.0027 Score=46.54 Aligned_cols=20 Identities=30% Similarity=0.082 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+..-.
T Consensus 37 liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 37 IIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EECCTTSSHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 99999999999999987643
No 148
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.92 E-value=0.0022 Score=48.64 Aligned_cols=21 Identities=10% Similarity=0.153 Sum_probs=19.5
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|+|..|+|||++++.|.+..
T Consensus 49 li~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 49 YITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp EEECCCSHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 389999999999999999987
No 149
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.92 E-value=0.003 Score=45.68 Aligned_cols=21 Identities=24% Similarity=0.067 Sum_probs=19.2
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|+|-.|+|||+||+.+.+..
T Consensus 33 ll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 33 LIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp EEECCTTSCHHHHHHHHHHTS
T ss_pred EEECCCCCcHHHHHHHHHHhc
Confidence 499999999999999999865
No 150
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.92 E-value=0.0028 Score=45.81 Aligned_cols=20 Identities=35% Similarity=0.396 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+..-.
T Consensus 37 l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 37 LIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EECSTTSSHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999987743
No 151
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.91 E-value=0.0028 Score=47.75 Aligned_cols=20 Identities=25% Similarity=0.137 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.+..-.
T Consensus 95 I~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 95 VAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp EECCTTSCHHHHHHHHHHHH
T ss_pred EECCCCchHHHHHHHHHhhc
Confidence 89999999999999998865
No 152
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.91 E-value=0.0028 Score=47.51 Aligned_cols=20 Identities=45% Similarity=0.504 Sum_probs=18.6
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+....
T Consensus 105 lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 105 IVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp EECCTTSCHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHH
Confidence 99999999999999998765
No 153
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.91 E-value=0.0029 Score=46.03 Aligned_cols=19 Identities=26% Similarity=0.186 Sum_probs=17.8
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|+|..|+|||||++.+..-
T Consensus 34 l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 34 LMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EECSTTSSHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 9999999999999999874
No 154
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.90 E-value=0.0029 Score=45.18 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+..-.
T Consensus 40 iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 40 FHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EECCTTSSHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 99999999999999997754
No 155
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.90 E-value=0.0029 Score=46.26 Aligned_cols=22 Identities=23% Similarity=0.129 Sum_probs=19.4
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.++|-.|+||||||+.+.+..
T Consensus 53 vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 53 ILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999998865
No 156
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.89 E-value=0.0029 Score=45.41 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|.|||||++.+..-.
T Consensus 39 i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 39 VAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EECCTTSSHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 157
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.88 E-value=0.0029 Score=43.99 Aligned_cols=18 Identities=22% Similarity=0.148 Sum_probs=17.0
Q ss_pred ccCcCCCchhHHHHhhhh
Q 042811 91 PFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~ 108 (130)
|+|.+|+|||||+..+..
T Consensus 25 i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 25 VYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999999876
No 158
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.87 E-value=0.003 Score=48.08 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=19.3
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
+|+|..|+||||||+.+.+..
T Consensus 88 LL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 88 LLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp EEECSTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHHHh
Confidence 399999999999999999865
No 159
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.87 E-value=0.003 Score=45.71 Aligned_cols=20 Identities=30% Similarity=0.144 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+..-.
T Consensus 33 i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 33 FAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EECCTTSSHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 99999999999999987643
No 160
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.87 E-value=0.0013 Score=45.78 Aligned_cols=19 Identities=37% Similarity=0.358 Sum_probs=16.5
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|.|..|+|||||++.+...
T Consensus 5 i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 5 IEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHH
Confidence 7899999999999998543
No 161
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.87 E-value=0.003 Score=48.03 Aligned_cols=20 Identities=25% Similarity=0.167 Sum_probs=18.6
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+||||||+.+.+..
T Consensus 122 l~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 122 LFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp EESSTTSSHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHc
Confidence 99999999999999998864
No 162
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.86 E-value=0.0033 Score=44.62 Aligned_cols=19 Identities=32% Similarity=0.240 Sum_probs=16.5
Q ss_pred cccCcCCCchhHHHHhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~ 108 (130)
.|.|+.|+||||+++.+..
T Consensus 4 ~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 4 LIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEECCTTSCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3789999999999998854
No 163
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.83 E-value=0.0032 Score=46.36 Aligned_cols=20 Identities=30% Similarity=0.102 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+..-.
T Consensus 55 liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 55 VIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCCCcHHHHHHHHHcCC
Confidence 99999999999999987643
No 164
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.83 E-value=0.0027 Score=47.46 Aligned_cols=20 Identities=40% Similarity=0.483 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|.+|+||||++.++....
T Consensus 110 lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 110 LFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999998766
No 165
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.83 E-value=0.0027 Score=43.64 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=19.1
Q ss_pred CccccCcCCCchhHHHHhhhhhh
Q 042811 88 NNWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 88 ~l~I~GmGGvGKTTLak~v~~~~ 110 (130)
++.|+|.+|+|||||++.+.+.+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 34599999999999999877754
No 166
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.82 E-value=0.0034 Score=44.43 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+....
T Consensus 24 l~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 24 LIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp EECCTTSSHHHHHHHHHHHC
T ss_pred EECcCCCCHHHHHHHHHhhC
Confidence 99999999999999998754
No 167
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.82 E-value=0.0032 Score=46.91 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.+....
T Consensus 36 I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 36 FSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp EECCTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 79999999999999987765
No 168
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.82 E-value=0.0031 Score=44.46 Aligned_cols=21 Identities=29% Similarity=0.260 Sum_probs=18.2
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|.|+.|+||||+++.+....
T Consensus 9 ~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 9 ILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp EEEECTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 389999999999999987654
No 169
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.82 E-value=0.0031 Score=44.24 Aligned_cols=19 Identities=21% Similarity=0.039 Sum_probs=16.5
Q ss_pred cccCcCCCchhHHHHhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~ 108 (130)
.|.|+.|+||||+++.+.+
T Consensus 4 ~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 4 ILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4789999999999998754
No 170
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.81 E-value=0.0029 Score=46.63 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+++-.
T Consensus 7 lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 7 VVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEESSSSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 79999999999999998754
No 171
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.81 E-value=0.0033 Score=46.37 Aligned_cols=20 Identities=25% Similarity=0.235 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+..-.
T Consensus 50 i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 50 LVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EECSTTSSHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 99999999999999997744
No 172
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.81 E-value=0.0033 Score=45.70 Aligned_cols=20 Identities=25% Similarity=0.165 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+..-.
T Consensus 40 i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 40 IVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EECSTTSSHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 99999999999999987643
No 173
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.81 E-value=0.0035 Score=41.09 Aligned_cols=20 Identities=25% Similarity=0.200 Sum_probs=17.4
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|..|+|||||+..+.+.
T Consensus 8 ~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 8 IMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 38999999999999998654
No 174
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.81 E-value=0.0033 Score=46.20 Aligned_cols=19 Identities=26% Similarity=0.218 Sum_probs=17.8
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|+|..|+|||||++.+..-
T Consensus 51 l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 51 IMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EECCTTSSHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 9999999999999999874
No 175
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.80 E-value=0.0034 Score=45.83 Aligned_cols=20 Identities=30% Similarity=0.285 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+..-.
T Consensus 31 liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 31 LVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EECCTTSSHHHHHHHHTTSS
T ss_pred EECCCCCcHHHHHHHHhCCC
Confidence 99999999999999987754
No 176
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.80 E-value=0.0036 Score=44.60 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=19.3
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|.|+.|+||||+++.+.+..
T Consensus 19 I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 19 AVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4599999999999999998765
No 177
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.79 E-value=0.0034 Score=45.97 Aligned_cols=20 Identities=30% Similarity=0.325 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+..-.
T Consensus 51 i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 51 LVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EECSTTSSHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhccC
Confidence 99999999999999997743
No 178
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.79 E-value=0.0036 Score=42.58 Aligned_cols=21 Identities=19% Similarity=0.117 Sum_probs=18.1
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 51 i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 51 IIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 349999999999999998764
No 179
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.77 E-value=0.0035 Score=46.05 Aligned_cols=20 Identities=30% Similarity=0.164 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+..-.
T Consensus 38 liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 38 VAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EECSTTSSHHHHHHHHTTSS
T ss_pred EECCCCCcHHHHHHHHhCCC
Confidence 99999999999999987743
No 180
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.77 E-value=0.0035 Score=46.47 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+..-.
T Consensus 39 iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 39 ILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EECCTTSSHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHHcCC
Confidence 99999999999999987643
No 181
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.76 E-value=0.0033 Score=47.09 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=18.6
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||++.+.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 449999999999999998874
No 182
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.76 E-value=0.0035 Score=45.88 Aligned_cols=20 Identities=30% Similarity=0.345 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+..-.
T Consensus 46 l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 46 LIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EECCTTSSHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 99999999999999987743
No 183
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.75 E-value=0.0038 Score=41.06 Aligned_cols=20 Identities=25% Similarity=0.222 Sum_probs=17.4
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|..|+|||||+..+.+.
T Consensus 7 ~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 7 VVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEECSTTSSHHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 38999999999999998654
No 184
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.75 E-value=0.0036 Score=45.94 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=19.5
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.++|-.|+||||||+.+.+..
T Consensus 50 ~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 50 FLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEESCSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHHHH
Confidence 3489999999999999998865
No 185
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.74 E-value=0.0036 Score=46.41 Aligned_cols=20 Identities=30% Similarity=0.358 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+..-.
T Consensus 52 liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 52 LYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EECCTTSSHHHHHHHHTTSS
T ss_pred EECCCCCcHHHHHHHHhCCC
Confidence 99999999999999987754
No 186
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.74 E-value=0.0035 Score=46.14 Aligned_cols=20 Identities=30% Similarity=0.245 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|.|||||++.+..-.
T Consensus 42 liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 42 IIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EECCTTSCHHHHHHHHTSSS
T ss_pred EECCCCCcHHHHHHHHhcCC
Confidence 99999999999999987643
No 187
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.74 E-value=0.0035 Score=49.42 Aligned_cols=20 Identities=25% Similarity=0.155 Sum_probs=18.8
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|||-.|+||||||+.+.+..
T Consensus 55 L~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 55 LWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp EECSTTSSHHHHHHHHHHHT
T ss_pred EECCCCCcHHHHHHHHHHHh
Confidence 99999999999999999865
No 188
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.73 E-value=0.0036 Score=43.89 Aligned_cols=18 Identities=28% Similarity=0.091 Sum_probs=16.3
Q ss_pred ccCcCCCchhHHHHhhhh
Q 042811 91 PFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~ 108 (130)
|.|+.|+||||+++.+..
T Consensus 9 i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 9 LTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 899999999999998754
No 189
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.73 E-value=0.0037 Score=43.63 Aligned_cols=20 Identities=20% Similarity=0.024 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.+....
T Consensus 28 i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 28 LTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp EECSTTSSHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHH
Confidence 99999999999999988655
No 190
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.72 E-value=0.004 Score=41.17 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=17.8
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 348999999999999888654
No 191
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.71 E-value=0.0038 Score=45.86 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=17.6
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|.|+.|+||||+++.+...
T Consensus 6 ~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 6 LTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEECCTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 38999999999999998763
No 192
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.70 E-value=0.0038 Score=47.54 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=19.5
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.++|..|+||||||+.+.+..
T Consensus 75 ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 75 ILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4599999999999999998865
No 193
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.70 E-value=0.0038 Score=41.44 Aligned_cols=22 Identities=27% Similarity=0.117 Sum_probs=17.9
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|+|..|+|||||+..+.+..
T Consensus 7 i~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCccHHHHHHHHhcCC
Confidence 3489999999999999986543
No 194
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.70 E-value=0.0039 Score=45.54 Aligned_cols=20 Identities=30% Similarity=0.287 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+..-.
T Consensus 36 l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 36 VLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EECCSSSSHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 195
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.70 E-value=0.0041 Score=40.92 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=17.1
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|..|+|||||+..+.+.
T Consensus 7 ~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 7 VLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 38999999999999887654
No 196
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.69 E-value=0.0041 Score=41.00 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=17.5
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|..|+|||||+..+.+.
T Consensus 10 ~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 10 CLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEECCTTSSHHHHHHHHHHS
T ss_pred EEECcCCCCHHHHHHHHHcC
Confidence 38999999999999988664
No 197
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.69 E-value=0.004 Score=44.72 Aligned_cols=20 Identities=25% Similarity=0.106 Sum_probs=17.9
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.+....
T Consensus 30 I~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 30 VSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EECSTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 89999999999999987743
No 198
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.67 E-value=0.0036 Score=42.53 Aligned_cols=18 Identities=22% Similarity=0.141 Sum_probs=16.6
Q ss_pred ccCcCCCchhHHHHhhhh
Q 042811 91 PFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~ 108 (130)
|+|..|+|||||+..|+-
T Consensus 31 i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 31 IVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEECTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999999854
No 199
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.67 E-value=0.0026 Score=45.12 Aligned_cols=19 Identities=26% Similarity=0.228 Sum_probs=12.4
Q ss_pred ccCcCCCchhHHHHhhh-hh
Q 042811 91 PFGVEGVGKITSLSKSY-PE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~-~~ 109 (130)
|.|..|+|||||++.+. ..
T Consensus 32 l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 32 LSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EECSCC----CHHHHHHC--
T ss_pred EECCCCCCHHHHHHHHHhcC
Confidence 99999999999999998 53
No 200
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.67 E-value=0.0044 Score=40.89 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=17.3
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|..|+|||||+..+.+.
T Consensus 7 ~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 7 AVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEECCTTSSHHHHHHHHHTC
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 38999999999999988653
No 201
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.65 E-value=0.0044 Score=42.88 Aligned_cols=22 Identities=32% Similarity=0.240 Sum_probs=19.1
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|.|..|+|||||++.+....
T Consensus 9 i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 9 LAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHhc
Confidence 3399999999999999998765
No 202
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.64 E-value=0.004 Score=46.97 Aligned_cols=20 Identities=35% Similarity=0.556 Sum_probs=16.8
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|-|||||||.+-++---.
T Consensus 53 IaGKGGVGKTTtavNLA~aL 72 (314)
T 3fwy_A 53 VYGKGGIGKSTTSSNLSAAF 72 (314)
T ss_dssp EECSTTSSHHHHHHHHHHHH
T ss_pred EECCCccCHHHHHHHHHHHH
Confidence 99999999999988775543
No 203
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.64 E-value=0.0044 Score=43.09 Aligned_cols=23 Identities=17% Similarity=0.079 Sum_probs=19.0
Q ss_pred CccccCcCCCchhHHHHhhhhhh
Q 042811 88 NNWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 88 ~l~I~GmGGvGKTTLak~v~~~~ 110 (130)
++.|+|..|+|||||+..+.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 34499999999999999887643
No 204
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.63 E-value=0.0039 Score=43.49 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=17.3
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|.+|+|||||+..+.+.
T Consensus 34 ~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 34 NIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEECTTSCHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHH
Confidence 38899999999999887665
No 205
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.63 E-value=0.0045 Score=41.17 Aligned_cols=22 Identities=27% Similarity=0.158 Sum_probs=18.4
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|+|..|+|||||+..+.+..
T Consensus 18 i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 18 YIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 3499999999999999986543
No 206
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.63 E-value=0.0041 Score=44.32 Aligned_cols=19 Identities=32% Similarity=0.130 Sum_probs=17.4
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|.|..|+|||||++.+...
T Consensus 25 i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 25 IEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EECSTTSCHHHHHHTTGGG
T ss_pred EECCCCCCHHHHHHHHHhc
Confidence 8999999999999998764
No 207
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.62 E-value=0.0035 Score=41.35 Aligned_cols=20 Identities=25% Similarity=0.134 Sum_probs=17.2
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|..|+|||||+..+.+.
T Consensus 6 ~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 6 LLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEESTTSSHHHHHHHHCCC
T ss_pred EEECCCCCCHHHHHHHHcCc
Confidence 38999999999999998653
No 208
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.62 E-value=0.0044 Score=40.98 Aligned_cols=18 Identities=33% Similarity=0.235 Sum_probs=16.2
Q ss_pred cccCcCCCchhHHHHhhh
Q 042811 90 WPFGVEGVGKITSLSKSY 107 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~ 107 (130)
.|+|..|+|||||+..+.
T Consensus 6 ~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 6 MLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 389999999999999874
No 209
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.59 E-value=0.0046 Score=47.68 Aligned_cols=22 Identities=23% Similarity=0.137 Sum_probs=18.6
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|+|+.|+|||||++.+.+..
T Consensus 27 i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 27 VILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 3489999999999999887654
No 210
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.57 E-value=0.0048 Score=46.31 Aligned_cols=20 Identities=25% Similarity=0.204 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+||||||+.+.+..
T Consensus 43 l~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 43 FSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp EESCTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 99999999999999998765
No 211
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.56 E-value=0.0043 Score=42.05 Aligned_cols=20 Identities=20% Similarity=0.094 Sum_probs=17.5
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|..|+|||||+..+.+.
T Consensus 11 ~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 11 VVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEESTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 48999999999999988654
No 212
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.56 E-value=0.0046 Score=47.59 Aligned_cols=20 Identities=45% Similarity=0.504 Sum_probs=18.7
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+....
T Consensus 162 lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 162 IVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp EECCTTSCHHHHHHHHHHHH
T ss_pred EEcCCCChHHHHHHHHHhhc
Confidence 99999999999999998866
No 213
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.55 E-value=0.0036 Score=46.73 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=17.4
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|-.|+|||||++.++..
T Consensus 22 ~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 22 MVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEETTSSHHHHHHHHHC-
T ss_pred EEECCCCCCHHHHHHHHhCC
Confidence 39999999999999998764
No 214
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.55 E-value=0.0046 Score=43.62 Aligned_cols=19 Identities=21% Similarity=0.072 Sum_probs=17.6
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|+|..|+|||||++.+...
T Consensus 29 i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 29 MFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EECCTTSSHHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHHH
Confidence 9999999999999998775
No 215
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.55 E-value=0.0049 Score=45.17 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+..-.
T Consensus 30 i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 30 VTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EECSTTCSHHHHHHHHHHHH
T ss_pred EECCCCccHHHHHHHHHHhC
Confidence 99999999999999987754
No 216
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.55 E-value=0.005 Score=41.04 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=17.6
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 11 i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 11 VIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 349999999999999887654
No 217
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.54 E-value=0.0051 Score=44.33 Aligned_cols=21 Identities=24% Similarity=0.131 Sum_probs=18.3
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|.|+.|+||||+++.+-+..
T Consensus 33 ~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 33 IFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEECCTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 389999999999999997654
No 218
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.54 E-value=0.0048 Score=45.37 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=19.4
Q ss_pred CCcc-ccCcCCCchhHHHHhhhhh
Q 042811 87 GNNW-PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 87 ~~l~-I~GmGGvGKTTLak~v~~~ 109 (130)
.++. |+|..|+|||||++.+..-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 4444 9999999999999998763
No 219
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.53 E-value=0.01 Score=43.04 Aligned_cols=27 Identities=15% Similarity=0.021 Sum_probs=21.1
Q ss_pred ccCcCCCchhHHHHhhhhhhhhccCCCCe
Q 042811 91 PFGVEGVGKITSLSKSYPEFLEDEGIFLI 119 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~~~~~~~Fd~ 119 (130)
+.|.||+||||++-.+.... . ...+++
T Consensus 11 ~~~kgGvGKTt~a~~la~~l-~-~~G~~V 37 (228)
T 2r8r_A 11 LGAAPGVGKTYAMLQAAHAQ-L-RQGVRV 37 (228)
T ss_dssp EESSTTSSHHHHHHHHHHHH-H-HTTCCE
T ss_pred EECCCCCcHHHHHHHHHHHH-H-HCCCCE
Confidence 78999999999988887766 2 345554
No 220
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.53 E-value=0.0047 Score=48.48 Aligned_cols=20 Identities=30% Similarity=0.273 Sum_probs=18.7
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+||||||+.+.+..
T Consensus 172 L~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 172 LFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp EECSTTSSHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHHHc
Confidence 99999999999999999864
No 221
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.53 E-value=0.0048 Score=49.25 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.4
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|+|..|+||||||+.+.+..
T Consensus 80 lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 80 AMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 3499999999999999998865
No 222
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.53 E-value=0.0045 Score=42.70 Aligned_cols=19 Identities=32% Similarity=0.184 Sum_probs=16.8
Q ss_pred ccccCcCCCchhHHHHhhh
Q 042811 89 NWPFGVEGVGKITSLSKSY 107 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~ 107 (130)
+.|+|.+|+|||||+..+.
T Consensus 26 i~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 26 VMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEECSTTSSHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4499999999999999984
No 223
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.53 E-value=0.0045 Score=41.23 Aligned_cols=20 Identities=30% Similarity=0.315 Sum_probs=17.6
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|..|+|||||+..+.+.
T Consensus 13 ~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 13 LIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEECCTTSCHHHHHHHHCSC
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 49999999999999998654
No 224
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.52 E-value=0.0055 Score=47.74 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|+.|+|||||++.+....
T Consensus 263 l~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 263 AVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp EESCTTSSHHHHHHHHTGGG
T ss_pred EECCCCCCHHHHHHHHHHhc
Confidence 99999999999999987754
No 225
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.52 E-value=0.0052 Score=41.32 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=17.8
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|..|+|||||+..+.+.
T Consensus 22 ~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 22 VVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 49999999999999998764
No 226
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.52 E-value=0.0046 Score=41.21 Aligned_cols=21 Identities=24% Similarity=0.107 Sum_probs=18.0
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 12 i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 12 LVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 349999999999999988664
No 227
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.51 E-value=0.0059 Score=40.69 Aligned_cols=21 Identities=19% Similarity=0.028 Sum_probs=17.6
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 9 i~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHGG
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 348999999999999987653
No 228
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.51 E-value=0.0053 Score=44.27 Aligned_cols=20 Identities=20% Similarity=0.094 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|+.|+||||+++.+....
T Consensus 27 I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 27 VSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EECSTTSSHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 99999999999999987754
No 229
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.51 E-value=0.0046 Score=41.73 Aligned_cols=21 Identities=19% Similarity=0.023 Sum_probs=18.2
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 7 i~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 7 VVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 448999999999999998764
No 230
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.50 E-value=0.002 Score=44.46 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=18.5
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|+|..|+|||||++.+..-.
T Consensus 5 v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 5 LSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3389999999999999987654
No 231
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.50 E-value=0.0045 Score=42.03 Aligned_cols=21 Identities=19% Similarity=0.078 Sum_probs=18.1
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 26 i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 26 IALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 349999999999999998664
No 232
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.48 E-value=0.0055 Score=40.09 Aligned_cols=20 Identities=25% Similarity=0.227 Sum_probs=16.9
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|..|+|||||+..+.+.
T Consensus 7 ~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 7 VVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEECCTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 38999999999999887643
No 233
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.48 E-value=0.0018 Score=53.90 Aligned_cols=32 Identities=19% Similarity=0.192 Sum_probs=25.0
Q ss_pred eeecccCCCCc------------cccCcCCCchhHHHHhhhhhh
Q 042811 79 KLGDVRRNGNN------------WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 79 ivG~~~~~~~l------------~I~GmGGvGKTTLak~v~~~~ 110 (130)
++|++..++.+ +++|-.|+||||||+.+.+..
T Consensus 182 iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 182 VIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 58877543332 299999999999999998864
No 234
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.47 E-value=0.0054 Score=41.83 Aligned_cols=19 Identities=16% Similarity=0.064 Sum_probs=16.0
Q ss_pred cccCcCCCchhHHHHhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~ 108 (130)
.|+|..|+|||||+..+.+
T Consensus 24 ~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 24 GIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEECCTTSCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHhc
Confidence 3999999999999976544
No 235
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.47 E-value=0.0057 Score=42.16 Aligned_cols=20 Identities=15% Similarity=0.016 Sum_probs=17.4
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|.|..|+||||+++.+...
T Consensus 6 ~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 6 TIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEECSTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 38999999999999998653
No 236
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.46 E-value=0.0055 Score=41.78 Aligned_cols=21 Identities=24% Similarity=0.167 Sum_probs=17.5
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 24 i~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 24 LAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCcHHHHHHHHHhC
Confidence 449999999999999876543
No 237
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.46 E-value=0.0034 Score=43.34 Aligned_cols=20 Identities=20% Similarity=0.135 Sum_probs=17.6
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|..|+|||||++.+.+.
T Consensus 30 ~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 30 AFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEECTTSSHHHHHTTTCCC
T ss_pred EEECCCCCCHHHHHHHHhCC
Confidence 49999999999999998754
No 238
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.46 E-value=0.0053 Score=46.62 Aligned_cols=20 Identities=30% Similarity=0.373 Sum_probs=18.6
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+....
T Consensus 134 lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 134 FVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp EECCTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999998766
No 239
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.46 E-value=0.0059 Score=40.15 Aligned_cols=18 Identities=33% Similarity=0.366 Sum_probs=16.0
Q ss_pred cccCcCCCchhHHHHhhh
Q 042811 90 WPFGVEGVGKITSLSKSY 107 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~ 107 (130)
.|+|..|+|||||+..+.
T Consensus 4 ~~~G~~~~GKssl~~~l~ 21 (164)
T 1r8s_A 4 LMVGLDAAGKTTILYKLK 21 (164)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 378999999999999874
No 240
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.46 E-value=0.0045 Score=47.18 Aligned_cols=20 Identities=30% Similarity=0.312 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+..-.
T Consensus 175 IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 175 ILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp EECCTTSHHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 99999999999999987654
No 241
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.45 E-value=0.0057 Score=40.94 Aligned_cols=21 Identities=24% Similarity=0.156 Sum_probs=17.9
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 21 i~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 21 VIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhhC
Confidence 349999999999999998654
No 242
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.44 E-value=0.0057 Score=40.71 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=17.8
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 10 i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 348999999999999998653
No 243
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.44 E-value=0.0058 Score=40.17 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=17.3
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|..|+|||||+..+.+.
T Consensus 10 ~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 10 VLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 48999999999999988653
No 244
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.43 E-value=0.0058 Score=40.85 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=17.9
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 15 i~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 349999999999999887654
No 245
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.42 E-value=0.0054 Score=49.29 Aligned_cols=20 Identities=45% Similarity=0.695 Sum_probs=18.6
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+....
T Consensus 298 LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 298 MVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp EECCTTSSHHHHHHHHHHHH
T ss_pred EECCCcccHHHHHHHHHHHh
Confidence 99999999999999998765
No 246
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.42 E-value=0.0059 Score=41.02 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=18.0
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|+|..|+|||||+..+.+..
T Consensus 8 ~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 8 VVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEECCTTSSHHHHHHHHHHSS
T ss_pred EEECCCCCCHHHHHHHHHhCC
Confidence 389999999999999987643
No 247
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.40 E-value=0.005 Score=41.51 Aligned_cols=21 Identities=24% Similarity=0.090 Sum_probs=17.5
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 347899999999999987654
No 248
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.40 E-value=0.0056 Score=46.41 Aligned_cols=22 Identities=18% Similarity=0.069 Sum_probs=19.5
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.++|..|+||||||+.+.+..
T Consensus 54 vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 54 ILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 3589999999999999998865
No 249
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.40 E-value=0.0053 Score=41.30 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=17.5
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|..|+|||||+..+.+.
T Consensus 14 ~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 14 LVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEESTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 39999999999999988654
No 250
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.40 E-value=0.0052 Score=41.51 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=18.6
Q ss_pred CccccCcCCCchhHHHHhhhhh
Q 042811 88 NNWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 88 ~l~I~GmGGvGKTTLak~v~~~ 109 (130)
++.|+|..|+|||||+..+.+.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3449999999999999988765
No 251
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.40 E-value=0.0057 Score=42.85 Aligned_cols=19 Identities=26% Similarity=0.125 Sum_probs=17.1
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|.|+.|+||||+++.+-..
T Consensus 17 ltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 17 VTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EECSTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 8999999999999988664
No 252
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.39 E-value=0.0062 Score=40.74 Aligned_cols=21 Identities=24% Similarity=0.145 Sum_probs=17.6
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 11 i~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 11 CVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 349999999999999887653
No 253
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.38 E-value=0.0047 Score=41.90 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=18.1
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 19 i~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 19 ILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEESTTSSHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 349999999999999998764
No 254
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.37 E-value=0.01 Score=42.52 Aligned_cols=20 Identities=35% Similarity=0.501 Sum_probs=19.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+||||+++.+.+..
T Consensus 31 i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 31 FEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp EECCTTSCHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999877
No 255
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.37 E-value=0.0045 Score=46.45 Aligned_cols=19 Identities=37% Similarity=0.370 Sum_probs=17.3
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|.|..|.|||||++.+...
T Consensus 9 i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 9 LTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEESSSSSCHHHHHHHHHS
T ss_pred EEecCCCCHHHHHHHHHhh
Confidence 8999999999999998854
No 256
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.37 E-value=0.0063 Score=40.18 Aligned_cols=20 Identities=30% Similarity=0.414 Sum_probs=17.4
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|..|+|||||+..+.+.
T Consensus 11 ~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 11 LILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 39999999999999998553
No 257
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.36 E-value=0.0066 Score=40.44 Aligned_cols=20 Identities=25% Similarity=0.054 Sum_probs=17.3
Q ss_pred ccccCcCCCchhHHHHhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~ 108 (130)
+.|+|..|+|||||+..+.+
T Consensus 11 i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 11 VTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp EEEESCTTTTHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 34999999999999998755
No 258
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.35 E-value=0.006 Score=45.78 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=18.9
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.++|..|+||||||+.+.+..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 3499999999999999987754
No 259
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.35 E-value=0.0054 Score=45.81 Aligned_cols=20 Identities=25% Similarity=0.124 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.+....
T Consensus 85 I~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 85 IAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp EEECTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 89999999999999998754
No 260
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.35 E-value=0.0052 Score=44.93 Aligned_cols=20 Identities=15% Similarity=0.077 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||+..+....
T Consensus 35 i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 35 LVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHH
Confidence 99999999999999987644
No 261
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.35 E-value=0.0063 Score=44.52 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=18.9
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.++|..|+||||+|+.+.+..
T Consensus 42 ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 42 LFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp EEESSSSSSHHHHHHHHHHHH
T ss_pred EEECcCCcCHHHHHHHHHHHh
Confidence 499999999999999998764
No 262
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.33 E-value=0.0041 Score=46.37 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=19.2
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
+|+|-.|+||||||+.+.+..
T Consensus 49 Ll~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 49 LVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp EEECCGGGCTTHHHHHHHHHS
T ss_pred EEECCCCccHHHHHHHHHHhC
Confidence 399999999999999998865
No 263
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.33 E-value=0.0058 Score=40.26 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=17.2
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|..|+|||||+..+.+.
T Consensus 7 ~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 7 LLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEESTTSSHHHHHHHHHHC
T ss_pred EEECcCCCCHHHHHHHHHhC
Confidence 38999999999999988654
No 264
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.32 E-value=0.0066 Score=41.51 Aligned_cols=21 Identities=24% Similarity=0.156 Sum_probs=17.7
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 17 i~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 17 VIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 349999999999999988653
No 265
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.32 E-value=0.0066 Score=41.52 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=17.6
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|..|+|||||+..+.+.
T Consensus 32 ~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 32 AIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEECCTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 39999999999999988654
No 266
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.31 E-value=0.0067 Score=40.62 Aligned_cols=20 Identities=25% Similarity=0.145 Sum_probs=17.0
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|..|+|||||+..+.+.
T Consensus 9 ~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 9 VVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 38999999999999887643
No 267
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.31 E-value=0.0066 Score=41.58 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=17.8
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 11 i~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 11 VIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 349999999999999987654
No 268
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.30 E-value=0.0068 Score=41.20 Aligned_cols=21 Identities=33% Similarity=0.328 Sum_probs=17.9
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 28 i~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 28 VVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 349999999999999987654
No 269
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.28 E-value=0.0058 Score=45.59 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+..-.
T Consensus 69 i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 69 VAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEESTTSSHHHHHHHHTTSS
T ss_pred EECCCCCcHHHHHHHHhcCC
Confidence 99999999999999998754
No 270
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.28 E-value=0.0048 Score=42.60 Aligned_cols=20 Identities=25% Similarity=0.190 Sum_probs=17.6
Q ss_pred ccccCcCCCchhHHHHhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~ 108 (130)
+.|+|.+|+|||||++.+.+
T Consensus 28 i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 28 LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEETTSSHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 44999999999999999865
No 271
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.28 E-value=0.007 Score=43.85 Aligned_cols=20 Identities=20% Similarity=0.119 Sum_probs=17.7
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.+....
T Consensus 14 i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 14 VDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp EECCTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 99999999999999987543
No 272
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.28 E-value=0.0056 Score=45.17 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=16.1
Q ss_pred ccCcCCCchhHHHHhhh
Q 042811 91 PFGVEGVGKITSLSKSY 107 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~ 107 (130)
|.|+.|+||||+++.+-
T Consensus 80 I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 80 LTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEECTTSCHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 99999999999999876
No 273
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.28 E-value=0.0062 Score=46.79 Aligned_cols=20 Identities=30% Similarity=0.162 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.|..-.
T Consensus 46 llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 46 LLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EECSTTSSHHHHHHHHHTSS
T ss_pred EECCCCCcHHHHHHHHhCCC
Confidence 99999999999999987643
No 274
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.27 E-value=0.0063 Score=45.75 Aligned_cols=20 Identities=45% Similarity=0.532 Sum_probs=18.6
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|.+|+||||++.++....
T Consensus 109 ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 109 VVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp EECCTTSSHHHHHHHHHHHH
T ss_pred EEcCCCChHHHHHHHHHHHH
Confidence 99999999999999998766
No 275
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.27 E-value=0.0064 Score=48.45 Aligned_cols=22 Identities=23% Similarity=0.089 Sum_probs=19.7
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|+|..|+||||||+.+.+..
T Consensus 52 vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 3499999999999999999865
No 276
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.27 E-value=0.0055 Score=48.34 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=19.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
+||..|+|||+||+.|.+..
T Consensus 220 LyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 220 MYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp EESCTTSSHHHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHHHHh
Confidence 99999999999999999876
No 277
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.27 E-value=0.007 Score=40.68 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=17.9
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 14 i~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 14 FLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 349999999999999998753
No 278
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.26 E-value=0.0071 Score=41.00 Aligned_cols=22 Identities=27% Similarity=0.209 Sum_probs=18.5
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|+|..|+|||||+..+.+..
T Consensus 19 i~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 3499999999999999987643
No 279
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.24 E-value=0.0051 Score=41.16 Aligned_cols=20 Identities=15% Similarity=0.120 Sum_probs=17.3
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|..|+|||||+..+.+.
T Consensus 11 ~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 11 GVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEECCGGGCHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 39999999999999987653
No 280
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.23 E-value=0.0069 Score=46.03 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=18.4
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|+|..|+|||||++.+....
T Consensus 9 ~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 9 FLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEECCTTSCHHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHHHc
Confidence 399999999999999987754
No 281
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.23 E-value=0.0074 Score=40.27 Aligned_cols=20 Identities=30% Similarity=0.278 Sum_probs=17.4
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|..|+|||||+..+.+.
T Consensus 14 ~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 14 MLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECcCCCCHHHHHHHHHhC
Confidence 39999999999999987654
No 282
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.23 E-value=0.0073 Score=41.81 Aligned_cols=21 Identities=14% Similarity=0.075 Sum_probs=17.7
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|.+|+|||||+..+.+.
T Consensus 10 i~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 10 VLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 349999999999999987653
No 283
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.22 E-value=0.007 Score=45.57 Aligned_cols=19 Identities=16% Similarity=-0.017 Sum_probs=17.4
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|+|..|.|||||++.+..-
T Consensus 131 IvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 131 FIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EECSSSSSHHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHhhh
Confidence 9999999999999998763
No 284
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.22 E-value=0.0084 Score=44.68 Aligned_cols=21 Identities=19% Similarity=0.007 Sum_probs=19.0
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
+|+|-.|+|||+||+.+++..
T Consensus 29 Li~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 29 LIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp EEESCTTSCHHHHHHHHHHHS
T ss_pred EEECCCCchHHHHHHHHHHhC
Confidence 499999999999999999854
No 285
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.21 E-value=0.0049 Score=51.98 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=18.5
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|-.|+||||||+.+.+..
T Consensus 243 L~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 243 LYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp ECSCTTSSHHHHHHHHHHTT
T ss_pred EECcCCCCHHHHHHHHHHHc
Confidence 99999999999999998854
No 286
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.21 E-value=0.0061 Score=44.82 Aligned_cols=20 Identities=20% Similarity=0.223 Sum_probs=18.5
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.+....
T Consensus 40 i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 40 VTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHH
Confidence 99999999999999988766
No 287
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.20 E-value=0.0072 Score=41.35 Aligned_cols=21 Identities=19% Similarity=0.112 Sum_probs=17.3
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 23 i~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 23 CVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEECSTTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 349999999999999887654
No 288
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.20 E-value=0.0068 Score=41.26 Aligned_cols=22 Identities=23% Similarity=0.163 Sum_probs=18.5
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|+|..|+|||||+..+.+..
T Consensus 26 i~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCcCHHHHHHHHhcCC
Confidence 3499999999999999887643
No 289
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.20 E-value=0.0073 Score=46.31 Aligned_cols=20 Identities=30% Similarity=0.273 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|-.|+|||+||+.+.+..
T Consensus 153 L~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 153 LFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp EESSTTSCHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHhh
Confidence 99999999999999997754
No 290
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.20 E-value=0.0075 Score=41.33 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=17.9
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 11 i~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 11 ILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 349999999999999987654
No 291
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.19 E-value=0.0067 Score=41.22 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=19.0
Q ss_pred CccccCcCCCchhHHHHhhhhhh
Q 042811 88 NNWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 88 ~l~I~GmGGvGKTTLak~v~~~~ 110 (130)
++.|+|..|+|||||+..+.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 34599999999999999986643
No 292
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.19 E-value=0.0072 Score=46.67 Aligned_cols=20 Identities=30% Similarity=0.245 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.|..-.
T Consensus 34 llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 34 LLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EECSTTSSHHHHHHHHHTSS
T ss_pred EECCCCcHHHHHHHHHHcCC
Confidence 99999999999999987643
No 293
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.19 E-value=0.0061 Score=46.93 Aligned_cols=20 Identities=30% Similarity=0.149 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.|..-.
T Consensus 35 llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 35 IIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEESTTSSHHHHHHHHHTSS
T ss_pred EECCCCchHHHHHHHHhcCC
Confidence 99999999999999987743
No 294
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.19 E-value=0.0061 Score=48.00 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=18.9
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
+||..|+|||+||+.|.+..
T Consensus 211 L~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 211 LYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp EESCTTTTHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 99999999999999999866
No 295
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.18 E-value=0.0068 Score=41.50 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=18.0
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 26 i~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 26 LLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 449999999999999988763
No 296
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.17 E-value=0.007 Score=46.56 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.|..-.
T Consensus 34 llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 34 LLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EECSTTSSHHHHHHHHHTSS
T ss_pred EEcCCCchHHHHHHHHHCCC
Confidence 99999999999999987643
No 297
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.17 E-value=0.007 Score=46.17 Aligned_cols=19 Identities=16% Similarity=0.025 Sum_probs=17.4
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|+|+.|+||||||..+...
T Consensus 128 I~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 128 VTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EECSCSSSHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHh
Confidence 9999999999999998764
No 298
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.17 E-value=0.0079 Score=40.93 Aligned_cols=21 Identities=29% Similarity=0.215 Sum_probs=17.9
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 24 i~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 449999999999999988654
No 299
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.17 E-value=0.0062 Score=47.67 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=18.9
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
+||..|+|||+||+.|.+..
T Consensus 187 L~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 187 LYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp EESCSSSSHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHhh
Confidence 99999999999999998866
No 300
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.17 E-value=0.0078 Score=40.63 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=18.1
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 10 i~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 10 TVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 349999999999999998765
No 301
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.16 E-value=0.0072 Score=46.67 Aligned_cols=20 Identities=25% Similarity=0.162 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|.|||||++.+..-.
T Consensus 59 IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 59 VIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EECCTTSSHHHHHHHHHTSS
T ss_pred EEcCCCchHHHHHHHHhcCC
Confidence 99999999999999987643
No 302
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.16 E-value=0.0079 Score=40.98 Aligned_cols=20 Identities=25% Similarity=0.077 Sum_probs=17.8
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|..|+|||||+..+.+.
T Consensus 27 ~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 27 VVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECcCCCCHHHHHHHHhcC
Confidence 39999999999999998764
No 303
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.16 E-value=0.0071 Score=46.58 Aligned_cols=20 Identities=30% Similarity=0.297 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.|..-.
T Consensus 34 llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 34 LLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EECCTTSSHHHHHHHHHTSS
T ss_pred EECCCCchHHHHHHHHhcCC
Confidence 99999999999999987643
No 304
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.15 E-value=0.0071 Score=40.55 Aligned_cols=21 Identities=19% Similarity=0.055 Sum_probs=17.6
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 9 i~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 9 IAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 348999999999999988743
No 305
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.15 E-value=0.0071 Score=40.16 Aligned_cols=20 Identities=20% Similarity=0.301 Sum_probs=17.3
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|..|+|||||+..+.+.
T Consensus 18 ~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 18 VFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEESTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 39999999999999998643
No 306
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.15 E-value=0.0072 Score=46.72 Aligned_cols=20 Identities=30% Similarity=0.245 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.|..-.
T Consensus 42 llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 42 LLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EECCTTSSHHHHHHHHHTSS
T ss_pred EECCCCChHHHHHHHHHcCC
Confidence 99999999999999987643
No 307
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.15 E-value=0.007 Score=42.16 Aligned_cols=21 Identities=19% Similarity=0.045 Sum_probs=18.2
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 31 i~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 31 IVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 349999999999999998664
No 308
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.14 E-value=0.0081 Score=40.59 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=17.7
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|..|+|||||+..+.+.
T Consensus 19 ~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 19 LIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 39999999999999998664
No 309
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.13 E-value=0.0079 Score=47.48 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=19.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
+||..|+|||+||+.|.+..
T Consensus 220 L~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 220 LYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp EESCTTSSHHHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHHHh
Confidence 99999999999999999876
No 310
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.12 E-value=0.0075 Score=44.92 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|.+|+||||++..+....
T Consensus 103 i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 103 LVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp EECCTTTTHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 78999999999999998766
No 311
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.12 E-value=0.0076 Score=45.53 Aligned_cols=20 Identities=45% Similarity=0.591 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|.+|+||||++.++....
T Consensus 110 ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 110 LVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp EESSTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 89999999999999988765
No 312
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.12 E-value=0.0083 Score=40.79 Aligned_cols=21 Identities=19% Similarity=0.033 Sum_probs=18.0
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 25 i~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 25 LTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 349999999999999998754
No 313
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.11 E-value=0.0052 Score=46.27 Aligned_cols=19 Identities=32% Similarity=0.319 Sum_probs=17.5
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|+|..|.|||||++.+..-
T Consensus 85 ivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 85 LVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EESSSCHHHHHHHHHHTTS
T ss_pred EECCCCchHHHHHHHHHcC
Confidence 9999999999999998764
No 314
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.11 E-value=0.0052 Score=45.81 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=19.3
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.++|-.|+||||||+.+.+..
T Consensus 49 vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 49 ILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp EEEESCCCHHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 3499999999999999998855
No 315
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.10 E-value=0.0029 Score=52.54 Aligned_cols=20 Identities=25% Similarity=0.180 Sum_probs=18.6
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|-.|+||||||+.+.+..
T Consensus 212 L~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 212 LVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp EECCTTSSHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHH
Confidence 99999999999999998765
No 316
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.10 E-value=0.0074 Score=41.49 Aligned_cols=21 Identities=19% Similarity=0.061 Sum_probs=18.1
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|+|..|+|||||+..+.+..
T Consensus 28 ~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 28 VILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEESTTSSHHHHHHHHHHSC
T ss_pred EEECCCCcCHHHHHHHHHhCC
Confidence 399999999999999987643
No 317
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.09 E-value=0.0026 Score=53.73 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=18.8
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
++|-.|+||||||+.+.+..
T Consensus 196 L~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 196 LIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp EEECTTSCHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHH
Confidence 99999999999999998865
No 318
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.09 E-value=0.0078 Score=48.23 Aligned_cols=21 Identities=29% Similarity=0.207 Sum_probs=19.1
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|+|..|+||||||+.|.+..
T Consensus 68 LL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 68 LLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp EEECSSSSSHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 499999999999999998865
No 319
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.08 E-value=0.0084 Score=45.86 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=18.5
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|.|..|+||||||+.+....
T Consensus 11 ~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 11 VIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEECSTTSSHHHHHHHHHHHT
T ss_pred EEECCCcCcHHHHHHHHHHHc
Confidence 399999999999999987764
No 320
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.07 E-value=0.0084 Score=42.63 Aligned_cols=21 Identities=19% Similarity=0.115 Sum_probs=18.2
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|+|..|+|||||+..+.+..
T Consensus 33 ~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 33 VLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEECCTTSSHHHHHHHHHTSC
T ss_pred EEECCCCCCHHHHHHHHcCCC
Confidence 399999999999999887643
No 321
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.07 E-value=0.0087 Score=40.58 Aligned_cols=21 Identities=19% Similarity=0.075 Sum_probs=17.8
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 23 i~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 23 IIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 449999999999999988643
No 322
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.06 E-value=0.0078 Score=46.71 Aligned_cols=20 Identities=30% Similarity=0.109 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.|..-.
T Consensus 34 llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 34 FVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EECCTTSSHHHHHHHHHTSS
T ss_pred EEcCCCchHHHHHHHHHcCC
Confidence 99999999999999987644
No 323
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.06 E-value=0.0077 Score=41.11 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=17.5
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|..|+|||||+..+.+.
T Consensus 27 ~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 27 CLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEECTTSSHHHHHHHHHHC
T ss_pred EEECcCCCCHHHHHHHHhcC
Confidence 39999999999999998654
No 324
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.05 E-value=0.0081 Score=44.36 Aligned_cols=20 Identities=35% Similarity=0.556 Sum_probs=17.5
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|-||+||||++-.+-.-.
T Consensus 46 v~~KGGvGKTT~a~nLA~~L 65 (307)
T 3end_A 46 VYGKGGIGKSTTSSNLSAAF 65 (307)
T ss_dssp EECSTTSSHHHHHHHHHHHH
T ss_pred EECCCCccHHHHHHHHHHHH
Confidence 66999999999999887765
No 325
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.04 E-value=0.0085 Score=45.41 Aligned_cols=20 Identities=25% Similarity=0.102 Sum_probs=17.9
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.+..-.
T Consensus 97 I~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 97 IAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp EECCTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 89999999999999987654
No 326
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.03 E-value=0.0081 Score=41.04 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=17.7
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 449999999999999998754
No 327
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.01 E-value=0.0093 Score=40.44 Aligned_cols=21 Identities=24% Similarity=0.210 Sum_probs=18.1
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 25 i~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 25 LLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 449999999999999988654
No 328
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.00 E-value=0.0092 Score=40.21 Aligned_cols=20 Identities=35% Similarity=0.426 Sum_probs=17.6
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|..|+|||||+..+.+.
T Consensus 22 ~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 22 LMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp EEECSTTSSHHHHHHHHTTC
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 49999999999999998754
No 329
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.99 E-value=0.0095 Score=41.94 Aligned_cols=21 Identities=19% Similarity=0.078 Sum_probs=18.2
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 32 I~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 32 IILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEECSTTSSHHHHHHHHTTT
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 449999999999999988664
No 330
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.98 E-value=0.0062 Score=40.85 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=17.2
Q ss_pred ccccCcCCCchhHHHHhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~ 108 (130)
+.|+|..|+|||||+..+.+
T Consensus 21 i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 21 ILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEETTSSHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 34999999999999998864
No 331
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.98 E-value=0.0095 Score=40.85 Aligned_cols=21 Identities=24% Similarity=0.118 Sum_probs=17.9
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 31 i~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 31 IVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 349999999999999988653
No 332
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.96 E-value=0.01 Score=42.28 Aligned_cols=19 Identities=21% Similarity=0.029 Sum_probs=17.2
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|.|+.|+||||+++.+...
T Consensus 21 i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 21 IDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp EECSSCSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 8999999999999988764
No 333
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.96 E-value=0.0087 Score=40.66 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=17.8
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 11 i~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 11 VVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCcHHHHHHHHHcC
Confidence 349999999999999998653
No 334
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.95 E-value=0.0082 Score=41.34 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=17.4
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 28 i~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 28 FLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHC-
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 339999999999999987653
No 335
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.93 E-value=0.0094 Score=46.79 Aligned_cols=20 Identities=25% Similarity=0.197 Sum_probs=19.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
++|..|+||||||+.+.+..
T Consensus 68 l~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 68 LAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp EECCTTSSHHHHHHHHHHHH
T ss_pred EECCCcCCHHHHHHHHHHHh
Confidence 99999999999999999876
No 336
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.93 E-value=0.0084 Score=45.81 Aligned_cols=20 Identities=35% Similarity=0.283 Sum_probs=18.7
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|-.|+|||||++.+.+..
T Consensus 76 IiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 76 IFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEECTTSSHHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 99999999999999998865
No 337
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.93 E-value=0.0079 Score=40.84 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=18.6
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|+|..|+|||||+..+.+..
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 24 VLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 4499999999999999987653
No 338
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.91 E-value=0.0094 Score=48.02 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=18.6
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
++|..|+||||||+.+.+..
T Consensus 113 l~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 113 LAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp EESSSSSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHhc
Confidence 99999999999999998765
No 339
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.91 E-value=0.0096 Score=46.06 Aligned_cols=20 Identities=20% Similarity=-0.047 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+.+..
T Consensus 174 l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 174 FKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp EECSTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHhhc
Confidence 99999999999999998743
No 340
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=94.90 E-value=0.0084 Score=43.20 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=16.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|-||+||||++-.+-.-.
T Consensus 6 vs~KGGvGKTT~a~nLA~~l 25 (269)
T 1cp2_A 6 IYGKGGIGKSTTTQNLTSGL 25 (269)
T ss_dssp EEECTTSSHHHHHHHHHHHH
T ss_pred EecCCCCcHHHHHHHHHHHH
Confidence 46889999999998875443
No 341
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.89 E-value=0.0099 Score=40.83 Aligned_cols=20 Identities=30% Similarity=0.164 Sum_probs=17.0
Q ss_pred ccccCcCCCchhHHHHhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~ 108 (130)
+.|+|-+|+|||||+..+.+
T Consensus 9 v~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 9 VVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 34999999999999988753
No 342
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.87 E-value=0.0063 Score=43.00 Aligned_cols=18 Identities=33% Similarity=0.300 Sum_probs=14.9
Q ss_pred ccCcCCCchhHHHHhhhh
Q 042811 91 PFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~ 108 (130)
|.|-||+||||++-.+-.
T Consensus 5 vs~kGGvGKTt~a~~LA~ 22 (254)
T 3kjh_A 5 VAGKGGVGKTTVAAGLIK 22 (254)
T ss_dssp EECSSSHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHH
Confidence 468999999999988643
No 343
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.86 E-value=0.0062 Score=46.65 Aligned_cols=20 Identities=25% Similarity=0.142 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.|..-.
T Consensus 31 llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 31 ILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EECCCTHHHHHHHHHHHTSS
T ss_pred EECCCCccHHHHHHHHHcCC
Confidence 99999999999999997743
No 344
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.86 E-value=0.0089 Score=41.66 Aligned_cols=20 Identities=25% Similarity=0.131 Sum_probs=17.1
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|..|+|||||+..+.+.
T Consensus 38 ~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 38 VLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEECTTSSHHHHHHHHHC-
T ss_pred EEECcCCCCHHHHHHHHHcC
Confidence 39999999999999988653
No 345
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.85 E-value=0.0092 Score=42.58 Aligned_cols=20 Identities=25% Similarity=0.119 Sum_probs=17.8
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|.-|+||||+++.+.+..
T Consensus 7 ~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 7 IEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEECTTSSHHHHHHHHHHHC
T ss_pred EEcCCCCCHHHHHHHHHHHc
Confidence 78999999999999987764
No 346
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.84 E-value=0.0088 Score=47.04 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.0
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|+|.+|+|||||+.++....
T Consensus 102 I~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 102 ILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp EEEECCSSSSTTHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 3499999999999999987765
No 347
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.84 E-value=0.0096 Score=40.46 Aligned_cols=21 Identities=24% Similarity=0.124 Sum_probs=18.0
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 21 i~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 21 CVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 349999999999999988754
No 348
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.83 E-value=0.011 Score=45.33 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=18.7
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|+|+.|+|||||+..+...+
T Consensus 44 vI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 44 VLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEECSTTSSHHHHHHHHHTTS
T ss_pred EEECCCCCCHHHHHHHHHHHC
Confidence 399999999999999987755
No 349
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.83 E-value=0.0092 Score=45.64 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|.|||||++.+..-.
T Consensus 180 ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 180 VAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp EEESSSSCHHHHHHHHHTTS
T ss_pred EECCCCCCHHHHHHHHHhcC
Confidence 99999999999999987754
No 350
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.83 E-value=0.011 Score=41.32 Aligned_cols=20 Identities=20% Similarity=0.081 Sum_probs=17.4
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|..|+|||||+..+.+.
T Consensus 31 ~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 31 VLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECcCCCCHHHHHHHHhcC
Confidence 39999999999999987654
No 351
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.83 E-value=0.0097 Score=41.35 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=17.6
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 29 i~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 29 IVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 349999999999999987543
No 352
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.82 E-value=0.0065 Score=40.80 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=7.6
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 11 i~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 11 LLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 349999999999999887543
No 353
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.80 E-value=0.011 Score=41.02 Aligned_cols=21 Identities=33% Similarity=0.360 Sum_probs=17.8
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 28 i~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 28 LLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 349999999999999987653
No 354
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.80 E-value=0.01 Score=40.13 Aligned_cols=19 Identities=26% Similarity=0.242 Sum_probs=17.0
Q ss_pred cccCcCCCchhHHHHhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~ 108 (130)
.|+|..|+|||||+..+.+
T Consensus 20 ~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 20 IIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEESTTSSHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHhc
Confidence 4999999999999998874
No 355
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.80 E-value=0.0096 Score=44.47 Aligned_cols=20 Identities=35% Similarity=0.426 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
++|.+|+||||++.++....
T Consensus 103 i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 103 LVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp EECSSCSSTTHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 88999999999999988765
No 356
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.80 E-value=0.0092 Score=47.51 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=18.9
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
++|..|+|||+||+.|.+..
T Consensus 248 LyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 248 LYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp ECSCTTSSHHHHHHHHHHHH
T ss_pred eeCCCCCcHHHHHHHHHhcc
Confidence 99999999999999999866
No 357
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.79 E-value=0.01 Score=40.84 Aligned_cols=21 Identities=29% Similarity=0.270 Sum_probs=17.8
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 11 i~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 11 LLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 349999999999999998654
No 358
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.79 E-value=0.01 Score=44.20 Aligned_cols=19 Identities=37% Similarity=0.323 Sum_probs=17.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.+. ..
T Consensus 170 l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 170 LAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EECSTTSSHHHHHHHHH-SC
T ss_pred EECCCCCCHHHHHHHHH-Hh
Confidence 99999999999999997 44
No 359
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.79 E-value=0.01 Score=41.06 Aligned_cols=22 Identities=18% Similarity=0.024 Sum_probs=18.5
Q ss_pred CccccCcCCCchhHHHHhhhhh
Q 042811 88 NNWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 88 ~l~I~GmGGvGKTTLak~v~~~ 109 (130)
++.|+|..|+|||||+..+.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3449999999999999988664
No 360
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.78 E-value=0.0095 Score=40.17 Aligned_cols=21 Identities=24% Similarity=0.199 Sum_probs=18.0
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 24 i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 24 VIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEETTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 449999999999999998653
No 361
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.77 E-value=0.024 Score=42.43 Aligned_cols=32 Identities=9% Similarity=-0.059 Sum_probs=24.0
Q ss_pred ccCcCCCchhHHHHhhhhhhhhccCCCCeEEEEEe
Q 042811 91 PFGVEGVGKITSLSKSYPEFLEDEGIFLIKMHDVV 125 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~wv~V 125 (130)
|.|..|+|||||+..+...... . . ..++|++.
T Consensus 73 i~G~pG~GKTtl~l~ia~~~a~-~-g-~~vl~~sl 104 (315)
T 3bh0_A 73 IAARPSMGKTAFALKQAKNMSD-N-D-DVVNLHSL 104 (315)
T ss_dssp EECCTTSSHHHHHHHHHHHHHT-T-T-CEEEEEES
T ss_pred EEeCCCCCHHHHHHHHHHHHHH-c-C-CeEEEEEC
Confidence 9999999999999998765522 2 2 56777653
No 362
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.77 E-value=0.01 Score=43.00 Aligned_cols=20 Identities=20% Similarity=-0.062 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|.-|+||||+++.+.+..
T Consensus 29 ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 29 IEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp EECSTTSSHHHHHTTTGGGC
T ss_pred EECCCCCCHHHHHHHHHHhc
Confidence 99999999999999998765
No 363
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.76 E-value=0.0096 Score=43.59 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=16.8
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|-||+||||++-.+-.-.
T Consensus 7 vs~KGGvGKTT~a~nLA~~L 26 (289)
T 2afh_E 7 IYGKGGIGKSTTTQNLVAAL 26 (289)
T ss_dssp EEECTTSSHHHHHHHHHHHH
T ss_pred EeCCCcCcHHHHHHHHHHHH
Confidence 56899999999999886654
No 364
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.74 E-value=0.011 Score=44.80 Aligned_cols=20 Identities=25% Similarity=0.228 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|.|||||++.+..-.
T Consensus 176 i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 176 VCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp EEESTTSCHHHHHHHGGGGS
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 365
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.73 E-value=0.0097 Score=46.27 Aligned_cols=19 Identities=37% Similarity=0.309 Sum_probs=17.5
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|+|..|+|||||++.|..-
T Consensus 52 llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 52 LLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEESTTSSHHHHHHHHHTC
T ss_pred EECCCCChHHHHHHHHhCC
Confidence 9999999999999998763
No 366
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.71 E-value=0.011 Score=40.86 Aligned_cols=20 Identities=25% Similarity=0.145 Sum_probs=17.2
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|..|+|||||+..+.+.
T Consensus 13 ~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 13 VTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEESTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 39999999999999887653
No 367
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.70 E-value=0.012 Score=40.38 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=17.8
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 23 i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 23 ILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 349999999999999987653
No 368
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.69 E-value=0.011 Score=40.66 Aligned_cols=22 Identities=18% Similarity=0.012 Sum_probs=18.6
Q ss_pred CccccCcCCCchhHHHHhhhhh
Q 042811 88 NNWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 88 ~l~I~GmGGvGKTTLak~v~~~ 109 (130)
++.|+|..|+|||||+..+.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3459999999999999988764
No 369
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.69 E-value=0.0099 Score=40.72 Aligned_cols=19 Identities=32% Similarity=0.307 Sum_probs=16.9
Q ss_pred cccCcCCCchhHHHHhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~ 108 (130)
.|+|..|+|||||+..+.+
T Consensus 33 ~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 33 LMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEESTTSSHHHHHHHHCS
T ss_pred EEECCCCCCHHHHHHHHHh
Confidence 3999999999999999854
No 370
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.68 E-value=0.011 Score=40.87 Aligned_cols=19 Identities=26% Similarity=0.198 Sum_probs=16.6
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|+|..|+|||||+..+.+.
T Consensus 35 vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 35 VVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEESTTSSHHHHHHHHHHS
T ss_pred EECcCCCCHHHHHHHHHhC
Confidence 9999999999999777643
No 371
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.67 E-value=0.012 Score=46.17 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=18.5
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|+|-.|+|||||++.+.+..
T Consensus 35 ~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 35 MVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEECCTTSSHHHHHHHHTTCC
T ss_pred EEECCCCCcHHHHHHHHhCCC
Confidence 499999999999999988753
No 372
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.67 E-value=0.0057 Score=46.89 Aligned_cols=20 Identities=25% Similarity=0.129 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.|..-.
T Consensus 36 llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 36 ILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EECSCHHHHHHHHHHHHTSS
T ss_pred EECCCCCcHHHHHHHHhCCC
Confidence 99999999999999987643
No 373
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.67 E-value=0.0099 Score=41.45 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=17.8
Q ss_pred ccccCcCCCchhHHHHh-hhhhh
Q 042811 89 NWPFGVEGVGKITSLSK-SYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~-v~~~~ 110 (130)
+.|+|..|+|||||+.. +.+.+
T Consensus 18 i~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcCCC
Confidence 34999999999999998 54443
No 374
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.66 E-value=0.011 Score=46.40 Aligned_cols=20 Identities=35% Similarity=0.381 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
++|.||+||||++-++-...
T Consensus 105 ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 105 MAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp EECSTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 88999999999999987766
No 375
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.64 E-value=0.011 Score=41.69 Aligned_cols=20 Identities=20% Similarity=-0.037 Sum_probs=16.9
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||+..+....
T Consensus 28 i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 28 LSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp EEECTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999987765544
No 376
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.64 E-value=0.017 Score=40.92 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=16.4
Q ss_pred ccccCcCCCchhHHHHhhh
Q 042811 89 NWPFGVEGVGKITSLSKSY 107 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~ 107 (130)
+.|+|-+|||||+|+...-
T Consensus 16 ivlvGd~~VGKTsLi~r~~ 34 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFM 34 (216)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHH
Confidence 4599999999999998753
No 377
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.63 E-value=0.013 Score=44.89 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=17.4
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|+|..|+|||||+..++..
T Consensus 42 vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 42 VVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp ECCCTTSCHHHHHHHHTTC
T ss_pred EEcCCCCCHHHHHHHHhCC
Confidence 9999999999999998764
No 378
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.63 E-value=0.0073 Score=48.99 Aligned_cols=20 Identities=25% Similarity=0.240 Sum_probs=18.7
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|+.|+|||||++.+....
T Consensus 374 LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 374 FTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp EEESSCHHHHHHHHHHHHHH
T ss_pred EECCCCChHHHHHHHHHHhh
Confidence 99999999999999998865
No 379
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.63 E-value=0.012 Score=40.66 Aligned_cols=21 Identities=19% Similarity=0.105 Sum_probs=17.8
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 32 i~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 32 LVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhhC
Confidence 349999999999999988653
No 380
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.63 E-value=0.011 Score=46.85 Aligned_cols=20 Identities=15% Similarity=-0.011 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+.+-.
T Consensus 143 IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 143 IVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp EEESTTSSHHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHhCcc
Confidence 99999999999999998755
No 381
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.61 E-value=0.023 Score=43.58 Aligned_cols=33 Identities=15% Similarity=-0.045 Sum_probs=24.6
Q ss_pred ccCcCCCchhHHHHhhhhhhhhccCCCCeEEEEEeC
Q 042811 91 PFGVEGVGKITSLSKSYPEFLEDEGIFLIKMHDVVR 126 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~wv~VS 126 (130)
|+|-+|+||||||..+-....+ .. ..++|+...
T Consensus 68 I~G~pGsGKTtLal~la~~~~~--~g-~~vlyid~E 100 (356)
T 1u94_A 68 IYGPESSGKTTLTLQVIAAAQR--EG-KTCAFIDAE 100 (356)
T ss_dssp EECSTTSSHHHHHHHHHHHHHH--TT-CCEEEEESS
T ss_pred EECCCCCCHHHHHHHHHHHHHH--CC-CeEEEEeCC
Confidence 9999999999999988766522 12 257777664
No 382
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.60 E-value=0.013 Score=45.08 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+....
T Consensus 141 ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 141 VTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp EECSSSSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHhhc
Confidence 99999999999999987754
No 383
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.59 E-value=0.013 Score=40.90 Aligned_cols=19 Identities=26% Similarity=0.172 Sum_probs=16.8
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|.|+.|+||||+++.+...
T Consensus 8 i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 8 LDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp EECCTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 8999999999999987553
No 384
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.59 E-value=0.012 Score=46.35 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=18.0
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|..|+|||||++.+...
T Consensus 46 aLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 46 LCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEECSTTSSSHHHHHHHHTS
T ss_pred EEECCCCCCHHHHHHHHhCc
Confidence 39999999999999999774
No 385
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.58 E-value=0.014 Score=39.03 Aligned_cols=17 Identities=29% Similarity=0.388 Sum_probs=16.0
Q ss_pred ccCcCCCchhHHHHhhh
Q 042811 91 PFGVEGVGKITSLSKSY 107 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~ 107 (130)
|+|..|.|||||+..|+
T Consensus 28 I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 28 IIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 99999999999999975
No 386
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.57 E-value=0.021 Score=43.57 Aligned_cols=33 Identities=18% Similarity=0.041 Sum_probs=24.2
Q ss_pred ccCcCCCchhHHHHhhhhhhhhccCCCCeEEEEEeC
Q 042811 91 PFGVEGVGKITSLSKSYPEFLEDEGIFLIKMHDVVR 126 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~wv~VS 126 (130)
|+|-.|+|||||+..+-....+ .. ..++|+...
T Consensus 66 I~G~pGsGKTtLal~la~~~~~--~g-~~vlyi~~E 98 (349)
T 2zr9_A 66 IYGPESSGKTTVALHAVANAQA--AG-GIAAFIDAE 98 (349)
T ss_dssp EEESTTSSHHHHHHHHHHHHHH--TT-CCEEEEESS
T ss_pred EECCCCCCHHHHHHHHHHHHHh--CC-CeEEEEECC
Confidence 9999999999999988765522 12 356777655
No 387
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.54 E-value=0.014 Score=46.06 Aligned_cols=22 Identities=18% Similarity=-0.000 Sum_probs=19.1
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
++++|+.|+||||+++.+....
T Consensus 42 IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 42 IVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4499999999999999987654
No 388
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.53 E-value=0.013 Score=44.56 Aligned_cols=19 Identities=37% Similarity=0.366 Sum_probs=16.9
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|.|.+|+|||||+..+...
T Consensus 84 i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 84 ITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp EECCTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 8999999999999988654
No 389
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.52 E-value=0.013 Score=43.53 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+....
T Consensus 174 l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 174 MAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EECSTTSSHHHHHHHHSTTC
T ss_pred EECCCCCcHHHHHHHhcccc
Confidence 99999999999999997654
No 390
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.50 E-value=0.014 Score=46.61 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=18.5
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|-.|+|||+||+.+.+..
T Consensus 243 L~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 243 LYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp EECSTTSSHHHHHHHHHHHC
T ss_pred EECcCCCCHHHHHHHHHHHh
Confidence 99999999999999998854
No 391
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.49 E-value=0.014 Score=44.72 Aligned_cols=20 Identities=30% Similarity=0.338 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.+.+..
T Consensus 128 I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 128 VTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EECSTTSCHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHhcc
Confidence 99999999999999987654
No 392
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.47 E-value=0.016 Score=41.03 Aligned_cols=20 Identities=30% Similarity=0.250 Sum_probs=16.9
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|.|..|+||||+|+.+-++
T Consensus 4 il~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 4 VFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEECSTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 36899999999999988654
No 393
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.45 E-value=0.012 Score=46.41 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=19.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
+||..|+|||+||+.|.+..
T Consensus 221 LyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 221 LYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp EESSTTTTHHHHHHHHHHHH
T ss_pred eECCCCchHHHHHHHHHHHh
Confidence 99999999999999999876
No 394
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.44 E-value=0.011 Score=42.37 Aligned_cols=22 Identities=14% Similarity=-0.222 Sum_probs=18.6
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
++|+|..|+||||+|..+.+..
T Consensus 61 ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 61 LVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4599999999999988877754
No 395
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.44 E-value=0.015 Score=39.92 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=15.1
Q ss_pred CcCCCchhHHHHhhhhhh
Q 042811 93 GVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 93 GmGGvGKTTLak~v~~~~ 110 (130)
+-||+||||++-.+-...
T Consensus 9 ~kgG~GKTt~a~~la~~l 26 (206)
T 4dzz_A 9 PKGGSGKTTAVINIATAL 26 (206)
T ss_dssp SSTTSSHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHH
Confidence 679999999998876554
No 396
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.41 E-value=0.014 Score=47.39 Aligned_cols=20 Identities=20% Similarity=0.091 Sum_probs=18.6
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+||||||+.+.+..
T Consensus 65 l~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 65 LIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp EECCTTSSHHHHHHHHHHTS
T ss_pred EEeCCCCCHHHHHHHHhccC
Confidence 99999999999999998855
No 397
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.40 E-value=0.015 Score=41.01 Aligned_cols=20 Identities=30% Similarity=0.164 Sum_probs=17.1
Q ss_pred ccccCcCCCchhHHHHhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~ 108 (130)
+.|+|-+|+|||||+..+.+
T Consensus 40 VvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 40 VVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEECCTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 44999999999999988753
No 398
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.39 E-value=0.016 Score=45.90 Aligned_cols=22 Identities=23% Similarity=0.129 Sum_probs=19.5
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.++|..|+||||||+.+.+..
T Consensus 53 iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 53 ILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHc
Confidence 4599999999999999998865
No 399
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.38 E-value=0.017 Score=41.31 Aligned_cols=20 Identities=35% Similarity=0.390 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+||||+|+.+-+.+
T Consensus 34 llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 34 VLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EECCTTCCHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 89999999999999998765
No 400
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=94.37 E-value=0.011 Score=45.37 Aligned_cols=21 Identities=19% Similarity=0.134 Sum_probs=17.7
Q ss_pred CCccccCcCCCchhHHHHhhh
Q 042811 87 GNNWPFGVEGVGKITSLSKSY 107 (130)
Q Consensus 87 ~~l~I~GmGGvGKTTLak~v~ 107 (130)
-++++.|.||+||||++|.+-
T Consensus 10 ~k~lllG~~~sGKsT~~kq~~ 30 (354)
T 2xtz_A 10 RKLLLLGAGESGKSTIFKQIK 30 (354)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eeEEEECCCCCcHHHHHHHHH
Confidence 345699999999999999863
No 401
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.36 E-value=0.015 Score=44.74 Aligned_cols=20 Identities=30% Similarity=0.202 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+....
T Consensus 220 lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 220 FAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EECCTTSSHHHHHHHHHCCS
T ss_pred EECCCCccHHHHHHHHhccc
Confidence 99999999999999998754
No 402
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.36 E-value=0.014 Score=45.99 Aligned_cols=20 Identities=30% Similarity=0.195 Sum_probs=18.5
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|-.|+|||||++.|.+-.
T Consensus 162 IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 162 LFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEECTTSSHHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHhccc
Confidence 99999999999999998854
No 403
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.36 E-value=0.017 Score=42.75 Aligned_cols=20 Identities=20% Similarity=0.134 Sum_probs=17.8
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
+.|..|+||||||+.+.+..
T Consensus 53 ~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 53 HSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp ECSSTTSSHHHHHHHHHHHT
T ss_pred eeCcCCCCHHHHHHHHHHHh
Confidence 77889999999999998764
No 404
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=94.35 E-value=0.016 Score=40.66 Aligned_cols=17 Identities=29% Similarity=0.149 Sum_probs=14.1
Q ss_pred CcCCCchhHHHHhhhhh
Q 042811 93 GVEGVGKITSLSKSYPE 109 (130)
Q Consensus 93 GmGGvGKTTLak~v~~~ 109 (130)
+-||+||||++-.+-.-
T Consensus 8 ~KGGvGKTT~a~~LA~~ 24 (209)
T 3cwq_A 8 FKGGVGKTTTAVHLSAY 24 (209)
T ss_dssp SSTTSSHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHH
Confidence 67999999999887543
No 405
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.35 E-value=0.01 Score=41.14 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=16.9
Q ss_pred cccCcCCCchhHHHHhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~ 108 (130)
.|+|..|+|||||+..+.+
T Consensus 15 ~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 15 CLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEECCTTSSHHHHHCBCTT
T ss_pred EEECCCCCCHHHHHHHHhc
Confidence 4999999999999998774
No 406
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.33 E-value=0.013 Score=42.71 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=17.7
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..++..
T Consensus 11 I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 349999999999999987654
No 407
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.31 E-value=0.011 Score=39.95 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=17.2
Q ss_pred ccccCcCCCchhHHHHhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~ 108 (130)
+.|+|..|+|||||+..+.+
T Consensus 25 i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 25 VLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEETTSSHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 34999999999999999854
No 408
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.31 E-value=0.024 Score=44.52 Aligned_cols=34 Identities=9% Similarity=-0.019 Sum_probs=23.5
Q ss_pred ccCcCCCchhHHHHhhhhhhhhccCCCCeEEEEEe
Q 042811 91 PFGVEGVGKITSLSKSYPEFLEDEGIFLIKMHDVV 125 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~wv~V 125 (130)
|+|-.|+|||||++.+-+........++++ .+-|
T Consensus 179 IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I-~~lI 212 (422)
T 3ice_A 179 IVAPPKAGKTMLLQNIAQSIAYNHPDCVLM-VLLI 212 (422)
T ss_dssp EECCSSSSHHHHHHHHHHHHHHHCTTSEEE-EEEE
T ss_pred EecCCCCChhHHHHHHHHHHhhcCCCeeEE-EEEe
Confidence 999999999999999877552212345543 3433
No 409
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.27 E-value=0.008 Score=41.05 Aligned_cols=21 Identities=24% Similarity=0.105 Sum_probs=2.7
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 23 i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 23 VAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEC-----------------
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 349999999999999987665
No 410
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.26 E-value=0.015 Score=41.73 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=17.8
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 25 I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 25 IILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEECTTSCHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 349999999999999998653
No 411
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.24 E-value=0.016 Score=43.86 Aligned_cols=19 Identities=37% Similarity=0.371 Sum_probs=17.1
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|+|..|+|||||++.+..-
T Consensus 60 i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 60 ITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp EECCTTSCHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 8999999999999998753
No 412
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.23 E-value=0.018 Score=42.86 Aligned_cols=19 Identities=37% Similarity=0.351 Sum_probs=17.3
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|+|..|+|||||+..+...
T Consensus 13 IvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 13 IVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EECSSSSSHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHHCC
Confidence 9999999999999998664
No 413
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.22 E-value=0.018 Score=40.23 Aligned_cols=21 Identities=33% Similarity=0.289 Sum_probs=17.9
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 16 i~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 16 IVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEESCTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 349999999999999987654
No 414
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.21 E-value=0.018 Score=46.27 Aligned_cols=22 Identities=18% Similarity=-0.000 Sum_probs=18.8
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
++++|+.|.||||+++.+....
T Consensus 38 IvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 38 IVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 3499999999999999986654
No 415
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.19 E-value=0.038 Score=39.22 Aligned_cols=27 Identities=26% Similarity=0.174 Sum_probs=22.1
Q ss_pred ccCcCCCchhHHHHhhhhhhhhccCCCCe
Q 042811 91 PFGVEGVGKITSLSKSYPEFLEDEGIFLI 119 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~~~~~~~Fd~ 119 (130)
|-|..|+||||+++.+.+.. . ...+++
T Consensus 11 ~eG~~gsGKsT~~~~l~~~l-~-~~~~~v 37 (213)
T 4edh_A 11 LEGPEGAGKSTNRDYLAERL-R-ERGIEV 37 (213)
T ss_dssp EECSTTSSHHHHHHHHHHHH-H-TTTCCE
T ss_pred EEcCCCCCHHHHHHHHHHHH-H-HcCCCc
Confidence 78999999999999999877 4 245654
No 416
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.17 E-value=0.017 Score=45.46 Aligned_cols=20 Identities=35% Similarity=0.409 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
++|.+|+||||++.++....
T Consensus 102 lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 102 LVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp ECCCTTSCHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 88999999999999988765
No 417
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.16 E-value=0.017 Score=42.01 Aligned_cols=19 Identities=26% Similarity=0.169 Sum_probs=17.1
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|+|..|+|||||...+.+.
T Consensus 8 lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 8 LVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEECSSSSHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 8999999999999998664
No 418
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=94.16 E-value=0.017 Score=44.30 Aligned_cols=19 Identities=26% Similarity=0.230 Sum_probs=16.6
Q ss_pred CccccCcCCCchhHHHHhh
Q 042811 88 NNWPFGVEGVGKITSLSKS 106 (130)
Q Consensus 88 ~l~I~GmGGvGKTTLak~v 106 (130)
+++|.|.||+||||++|.+
T Consensus 35 killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 35 KILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 3459999999999999985
No 419
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.15 E-value=0.018 Score=46.47 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|.|||||++.+....
T Consensus 52 LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 52 IVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EECCTTSSHHHHHHHHHTSS
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999988743
No 420
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.11 E-value=0.018 Score=45.28 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|.+|+||||++..+....
T Consensus 103 i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 103 LVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp EECCTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 88999999999999998766
No 421
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.09 E-value=0.024 Score=47.75 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=18.9
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
++|..|+||||||+.+.+..
T Consensus 516 L~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 516 FYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CBCCTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 99999999999999999865
No 422
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.09 E-value=0.021 Score=41.35 Aligned_cols=20 Identities=30% Similarity=0.348 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|+.|+||||+++.+.+..
T Consensus 13 ~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 13 LLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EECCTTSCHHHHHHHHHHHH
T ss_pred eECCCCCCHHHHHHHHHHHh
Confidence 89999999999999987755
No 423
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.03 E-value=0.017 Score=43.97 Aligned_cols=20 Identities=25% Similarity=0.159 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+....
T Consensus 136 I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 136 VFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEESTTSSHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 99999999999999987654
No 424
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.99 E-value=0.021 Score=41.07 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=18.0
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 24 I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 24 LILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEESSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 349999999999999988764
No 425
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.98 E-value=0.02 Score=46.12 Aligned_cols=20 Identities=25% Similarity=0.179 Sum_probs=18.6
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+....
T Consensus 317 i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 317 IVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EECCTTSSHHHHHHHHHTSS
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998854
No 426
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.97 E-value=0.013 Score=43.43 Aligned_cols=20 Identities=25% Similarity=0.189 Sum_probs=14.9
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+||||+++.+.+.+
T Consensus 10 ItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 10 VTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp EESCC---CCTHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 88999999999999987754
No 427
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=93.95 E-value=0.021 Score=42.51 Aligned_cols=20 Identities=30% Similarity=0.179 Sum_probs=17.5
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|.+|+|||||+..+.+.
T Consensus 11 ~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 11 AIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEECSTTSSHHHHHHHHHTS
T ss_pred EEECCCCCCHHHHHHHHhCC
Confidence 39999999999999997654
No 428
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.01 E-value=0.01 Score=40.84 Aligned_cols=19 Identities=26% Similarity=0.137 Sum_probs=16.3
Q ss_pred cccCcCCCchhHHHHhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~ 108 (130)
.|+|..|+|||||+..+.+
T Consensus 34 ~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 34 VVVGDGAVGKTCLLISYTT 52 (204)
Confidence 3999999999999977654
No 429
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.94 E-value=0.023 Score=43.21 Aligned_cols=20 Identities=20% Similarity=0.167 Sum_probs=17.9
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||+..+...+
T Consensus 8 i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 8 IVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EECCTTSCHHHHHHHHHHTT
T ss_pred EECCCcCCHHHHHHHHHHhC
Confidence 89999999999999987654
No 430
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.93 E-value=0.021 Score=46.12 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=18.5
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+..-.
T Consensus 299 i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 299 ILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EECCTTSSHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 431
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.92 E-value=0.022 Score=45.77 Aligned_cols=22 Identities=9% Similarity=-0.221 Sum_probs=19.8
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
|++.|+.|+||||+++.+....
T Consensus 398 I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 398 IVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp EEECTTCCSCHHHHHHHHHHHH
T ss_pred EEecccCCCCHHHHHHHHHHHH
Confidence 3399999999999999998876
No 432
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.92 E-value=0.055 Score=40.47 Aligned_cols=36 Identities=17% Similarity=-0.008 Sum_probs=24.7
Q ss_pred ccCcCCCchhHHHHhhhhhhhhcc--C-CCCeEEEEEeC
Q 042811 91 PFGVEGVGKITSLSKSYPEFLEDE--G-IFLIKMHDVVR 126 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~~~~~--~-~Fd~~~wv~VS 126 (130)
|+|..|+|||||+..+........ . .=..++|++..
T Consensus 112 i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e 150 (324)
T 2z43_A 112 FFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTE 150 (324)
T ss_dssp EEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred EECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 999999999999998876541110 0 02367787655
No 433
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.91 E-value=0.021 Score=43.45 Aligned_cols=19 Identities=26% Similarity=0.092 Sum_probs=17.2
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|+|..|+|||||+..+-..
T Consensus 79 lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 79 LSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp EECCTTSSHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHH
Confidence 8999999999999998763
No 434
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=93.89 E-value=0.019 Score=43.09 Aligned_cols=20 Identities=30% Similarity=0.154 Sum_probs=17.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
.-|-||+||||+|..+--..
T Consensus 19 ~sgKGGvGKTTvA~~LA~~l 38 (324)
T 3zq6_A 19 IGGKGGVGKTTISAATALWM 38 (324)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred EeCCCCchHHHHHHHHHHHH
Confidence 77999999999999887655
No 435
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.88 E-value=0.023 Score=43.10 Aligned_cols=20 Identities=15% Similarity=0.072 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||+..+....
T Consensus 15 i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 15 LMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EECCTTSCHHHHHHHHHHHS
T ss_pred EECCCccCHHHHHHHHHHhC
Confidence 89999999999999998754
No 436
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=93.87 E-value=0.022 Score=41.02 Aligned_cols=20 Identities=30% Similarity=0.054 Sum_probs=17.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
.-+-||+||||++-.+-.-.
T Consensus 33 ~s~kGGvGKTT~a~~LA~~l 52 (267)
T 3k9g_A 33 ASIKGGVGKSTSAIILATLL 52 (267)
T ss_dssp CCSSSSSCHHHHHHHHHHHH
T ss_pred EeCCCCchHHHHHHHHHHHH
Confidence 56899999999999887655
No 437
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.85 E-value=0.0095 Score=41.41 Aligned_cols=21 Identities=19% Similarity=0.075 Sum_probs=18.4
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.|+|..|+|||||+..+.+.
T Consensus 32 i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 32 IAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp EEEEESCHHHHHHHHHHHTTC
T ss_pred EEEEcCCCCCHHHHHHHHhCC
Confidence 449999999999999998765
No 438
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.82 E-value=0.023 Score=42.29 Aligned_cols=19 Identities=32% Similarity=0.282 Sum_probs=17.0
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|+|..|+|||||+..+.+.
T Consensus 15 ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 15 IVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EECSTTSSHHHHHHHHHTS
T ss_pred EECCCCCcHHHHHHHHhCC
Confidence 8999999999999987664
No 439
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.78 E-value=0.023 Score=39.25 Aligned_cols=19 Identities=26% Similarity=-0.001 Sum_probs=15.2
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|+|.-|+||||++..+...
T Consensus 8 i~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 8 ITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp EEESTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 8999999999998554443
No 440
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=93.78 E-value=0.024 Score=40.90 Aligned_cols=20 Identities=30% Similarity=0.260 Sum_probs=16.8
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
.-+-||+||||++-.+-.-.
T Consensus 24 ~s~kGGvGKTT~a~nLA~~l 43 (262)
T 2ph1_A 24 MSGKGGVGKSTVTALLAVHY 43 (262)
T ss_dssp ECSSSCTTHHHHHHHHHHHH
T ss_pred EcCCCCCCHHHHHHHHHHHH
Confidence 45789999999999987665
No 441
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.77 E-value=0.023 Score=45.85 Aligned_cols=20 Identities=40% Similarity=0.458 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|.|||||++.+....
T Consensus 30 LiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 30 VLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EECCTTSSHHHHHHHHTTSS
T ss_pred EECCCCCcHHHHHHHHhcCC
Confidence 89999999999999988753
No 442
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.76 E-value=0.02 Score=43.25 Aligned_cols=19 Identities=32% Similarity=0.148 Sum_probs=16.8
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|.|.+|+|||||+..+...
T Consensus 61 i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 61 VTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp EEECTTSCHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHH
Confidence 8999999999999998543
No 443
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.67 E-value=0.026 Score=45.92 Aligned_cols=21 Identities=14% Similarity=0.023 Sum_probs=18.9
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
+|.|+.|+||||+|+.+....
T Consensus 400 ~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 400 FLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp EEECSTTSSHHHHHHHHHHHH
T ss_pred EeecCCCCCHHHHHHHHHHHh
Confidence 399999999999999998765
No 444
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.65 E-value=0.025 Score=47.82 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=18.9
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
++|..|+|||+||+.|.+..
T Consensus 243 L~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 243 LYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp EECCTTSCHHHHHHHHHTTT
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 99999999999999999865
No 445
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=93.65 E-value=0.025 Score=42.99 Aligned_cols=20 Identities=30% Similarity=0.152 Sum_probs=17.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
+-|-||+||||+|..+--..
T Consensus 31 ~sgKGGvGKTTvA~~LA~~l 50 (349)
T 3ug7_A 31 FGGKGGVGKTTMSAATGVYL 50 (349)
T ss_dssp EECSSSTTHHHHHHHHHHHH
T ss_pred EeCCCCccHHHHHHHHHHHH
Confidence 77999999999998886655
No 446
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.64 E-value=0.026 Score=46.50 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.3
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|.|+.|+||||+|+.+....
T Consensus 55 IvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 55 VWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 4499999999999999997764
No 447
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.64 E-value=0.026 Score=44.21 Aligned_cols=20 Identities=35% Similarity=0.431 Sum_probs=18.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.+.+..
T Consensus 172 I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 172 VTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp EECSTTSCHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHhhc
Confidence 99999999999999987754
No 448
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.64 E-value=0.048 Score=39.41 Aligned_cols=30 Identities=20% Similarity=0.184 Sum_probs=23.9
Q ss_pred ccCcCCCchhHHHHhhhhhhhhccCCCCeEEE
Q 042811 91 PFGVEGVGKITSLSKSYPEFLEDEGIFLIKMH 122 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~w 122 (130)
|-|..|+||||+++.+.+.. . ...+..+..
T Consensus 32 ~eG~~GsGKsT~~~~l~~~l-~-~~~~~~~~~ 61 (236)
T 3lv8_A 32 IEGLEGAGKSTAIQVVVETL-Q-QNGIDHITR 61 (236)
T ss_dssp EEESTTSCHHHHHHHHHHHH-H-HTTCCCEEE
T ss_pred EECCCCCCHHHHHHHHHHHH-H-hcCCCeeee
Confidence 99999999999999999877 4 346664443
No 449
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.62 E-value=0.025 Score=45.82 Aligned_cols=20 Identities=25% Similarity=0.170 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|.|||||++.+..-.
T Consensus 374 ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 374 LVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 99999999999999987643
No 450
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.61 E-value=0.024 Score=41.17 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=18.2
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.++|..|+|||||+..+.+..
T Consensus 43 ~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 43 LVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEESTTSSHHHHHHHHHTSC
T ss_pred EEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999987653
No 451
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.61 E-value=0.025 Score=44.72 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=18.5
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.++|.+|+||||++.++....
T Consensus 104 livG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 104 LMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp EEECCTTSSHHHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHHHH
Confidence 389999999999999987765
No 452
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.60 E-value=0.024 Score=44.42 Aligned_cols=19 Identities=21% Similarity=0.151 Sum_probs=17.6
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|+|..|+|||||++.+..-
T Consensus 74 lvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 74 VTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEECTTSSHHHHHHHHHTC
T ss_pred EECCCCCcHHHHHHHHhCC
Confidence 8999999999999999873
No 453
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.60 E-value=0.026 Score=46.23 Aligned_cols=20 Identities=25% Similarity=0.179 Sum_probs=18.6
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+....
T Consensus 387 i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 387 IVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EECCTTSSHHHHHHHHHTSS
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 99999999999999998854
No 454
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.60 E-value=0.026 Score=45.12 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=17.9
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+..-.
T Consensus 34 liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 34 LSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp EECCTTSSHHHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHhcCC
Confidence 99999999999999987643
No 455
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=93.60 E-value=0.015 Score=41.87 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=17.7
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.|..-.
T Consensus 32 i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 32 LSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHSCCSHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHhccc
Confidence 99999999999999986643
No 456
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.57 E-value=0.026 Score=46.22 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|.|||||++.+....
T Consensus 122 LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 122 IVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EECCTTSSHHHHHHHHTTSS
T ss_pred EECCCCChHHHHHHHHhCCC
Confidence 99999999999999987744
No 457
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=93.56 E-value=0.028 Score=39.68 Aligned_cols=18 Identities=11% Similarity=-0.053 Sum_probs=15.7
Q ss_pred CcCCCchhHHHHhhhhhh
Q 042811 93 GVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 93 GmGGvGKTTLak~v~~~~ 110 (130)
+-||+||||++-.+-.-.
T Consensus 12 ~kGGvGKTt~a~~LA~~l 29 (245)
T 3ea0_A 12 AKGGDGGSCIAANFAFAL 29 (245)
T ss_dssp SSTTSSHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHH
Confidence 679999999999987765
No 458
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.54 E-value=0.024 Score=45.93 Aligned_cols=20 Identities=30% Similarity=0.209 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|.|||||++.+..-.
T Consensus 374 ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 374 LVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEECTTSSHHHHHHHHTTTT
T ss_pred EECCCCCCHHHHHHHHhhcc
Confidence 99999999999999987643
No 459
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.51 E-value=0.027 Score=46.12 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=18.2
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+..-.
T Consensus 108 LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 108 LVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EECCTTSSHHHHHHHHHTSS
T ss_pred EECCCCChHHHHHHHHhcCC
Confidence 99999999999999987754
No 460
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=93.51 E-value=0.029 Score=39.27 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=16.3
Q ss_pred ccCcCCCchhHHHHhhhh
Q 042811 91 PFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~ 108 (130)
|+|..|.|||||+..|+-
T Consensus 28 I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 28 IIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHH
Confidence 999999999999998753
No 461
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=93.51 E-value=0.027 Score=41.85 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=17.8
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.++|.+|+|||||...+.+.
T Consensus 6 I~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 6 LLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEECCTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 348999999999999997654
No 462
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.47 E-value=0.0093 Score=44.92 Aligned_cols=20 Identities=40% Similarity=0.511 Sum_probs=17.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+....
T Consensus 178 lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 178 FAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEESHHHHHHHHHHHHCC--
T ss_pred EECCCCCCHHHHHHHhcccc
Confidence 99999999999999987643
No 463
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.47 E-value=0.028 Score=42.94 Aligned_cols=20 Identities=35% Similarity=0.321 Sum_probs=17.5
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
+-|.||+||||+|..+.-..
T Consensus 23 ~~gkGGvGKTt~a~~lA~~l 42 (348)
T 3io3_A 23 VGGKGGVGKTTTSSSVAVQL 42 (348)
T ss_dssp EECSTTSSHHHHHHHHHHHH
T ss_pred EeCCCCCcHHHHHHHHHHHH
Confidence 88999999999999887655
No 464
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=93.44 E-value=0.025 Score=45.95 Aligned_cols=20 Identities=35% Similarity=0.356 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|.|||||++.+..-.
T Consensus 375 ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 375 LVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EECCTTSSSTHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhcCc
Confidence 99999999999999987643
No 465
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.41 E-value=0.047 Score=41.87 Aligned_cols=33 Identities=21% Similarity=0.072 Sum_probs=23.9
Q ss_pred ccCcCCCchhHHHHhhhhhhhhccCCCCeEEEEEeC
Q 042811 91 PFGVEGVGKITSLSKSYPEFLEDEGIFLIKMHDVVR 126 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~wv~VS 126 (130)
|+|-.|+|||||+..+.... .. .. ..++|+...
T Consensus 66 I~GppGsGKSTLal~la~~~-~~-~g-g~VlyId~E 98 (356)
T 3hr8_A 66 IFGQESSGKTTLALHAIAEA-QK-MG-GVAAFIDAE 98 (356)
T ss_dssp EEESTTSSHHHHHHHHHHHH-HH-TT-CCEEEEESS
T ss_pred EECCCCCCHHHHHHHHHHHH-Hh-cC-CeEEEEecc
Confidence 99999999999999988765 21 12 245666543
No 466
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.38 E-value=0.029 Score=45.04 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=17.9
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|+|.+|+|||||+.++-...
T Consensus 105 ~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 105 MFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp EEECSTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 389999999999999987544
No 467
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.37 E-value=0.029 Score=45.03 Aligned_cols=20 Identities=25% Similarity=0.215 Sum_probs=18.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|.|..|+|||||++.+..-.
T Consensus 265 I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 265 VVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp EEESTTSSHHHHHHHHGGGS
T ss_pred EECCCCCCHHHHHHHHHhhC
Confidence 99999999999999987654
No 468
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.34 E-value=0.034 Score=39.91 Aligned_cols=20 Identities=25% Similarity=0.207 Sum_probs=18.7
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|-|..|+||||+++.+.+..
T Consensus 26 ~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 26 FEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp EECSTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 88999999999999998876
No 469
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.34 E-value=0.027 Score=40.53 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=15.9
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|-|..|+||||+++.+.+..
T Consensus 30 ~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 30 FEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp EECCC---CHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 88999999999999999877
No 470
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.33 E-value=0.027 Score=42.10 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=16.6
Q ss_pred ccCcCCCchhHHHHhhh
Q 042811 91 PFGVEGVGKITSLSKSY 107 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~ 107 (130)
|+|..|.|||||+..|+
T Consensus 29 i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 29 IVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EECCTTTCSTHHHHHHH
T ss_pred EECCCCCcHHHHHHHHH
Confidence 99999999999999998
No 471
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=93.33 E-value=0.011 Score=40.48 Aligned_cols=20 Identities=30% Similarity=0.317 Sum_probs=17.1
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|..|+|||||+..+.+.
T Consensus 37 ~vvG~~~~GKSsli~~l~~~ 56 (199)
T 3l0i_B 37 LLIGDSGVGKSCLLLRFADD 56 (199)
T ss_dssp EEECCTTSCCTTTTTSSBCC
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 39999999999999887653
No 472
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.33 E-value=0.029 Score=40.60 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=17.9
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|+|..|+|||||+..+.+..
T Consensus 40 ~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 40 LVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEECTTSSHHHHHHHHHTSC
T ss_pred EEECCCCCCHHHHHHHHhCCC
Confidence 389999999999999987643
No 473
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.32 E-value=0.03 Score=45.87 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=18.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+..-.
T Consensus 383 iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 383 MMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EESCTTSSHHHHHHHHHTSS
T ss_pred EECCCCCcHHHHHHHHhcCC
Confidence 99999999999999998754
No 474
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.30 E-value=0.051 Score=41.79 Aligned_cols=33 Identities=15% Similarity=-0.083 Sum_probs=24.7
Q ss_pred ccCcCCCchhHHHHhhhhhhhhccCCCCeEEEEEeC
Q 042811 91 PFGVEGVGKITSLSKSYPEFLEDEGIFLIKMHDVVR 126 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~~~~~~~Fd~~~wv~VS 126 (130)
|+|-.|+||||||..+-....+ .. ..++|+...
T Consensus 79 I~G~pGsGKTtlal~la~~~~~--~g-~~vlyi~~E 111 (366)
T 1xp8_A 79 IYGPESGGKTTLALAIVAQAQK--AG-GTCAFIDAE 111 (366)
T ss_dssp EEESTTSSHHHHHHHHHHHHHH--TT-CCEEEEESS
T ss_pred EEcCCCCChHHHHHHHHHHHHH--CC-CeEEEEECC
Confidence 9999999999999887765522 22 357887765
No 475
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.26 E-value=0.033 Score=46.32 Aligned_cols=22 Identities=23% Similarity=0.148 Sum_probs=19.6
Q ss_pred ccccCcCCCchhHHHHhhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~~ 110 (130)
+.++|..|+|||+||+.+.+..
T Consensus 524 ~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 524 FIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3499999999999999998875
No 476
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=93.25 E-value=0.033 Score=39.63 Aligned_cols=19 Identities=37% Similarity=0.371 Sum_probs=15.9
Q ss_pred cCcCCCchhHHHHhhhhhh
Q 042811 92 FGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 92 ~GmGGvGKTTLak~v~~~~ 110 (130)
-+-||+||||++-.+-.-.
T Consensus 9 s~kgGvGKTt~a~~LA~~l 27 (260)
T 3q9l_A 9 SGKGGVGKTTSSAAIATGL 27 (260)
T ss_dssp CSSTTSSHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHH
Confidence 4679999999999887665
No 477
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=93.21 E-value=0.025 Score=45.76 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=17.8
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|.|||||++.+..-.
T Consensus 372 ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 372 FVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EECSTTSSHHHHHTTTTTSS
T ss_pred EECCCCChHHHHHHHHhcCC
Confidence 99999999999999987643
No 478
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.19 E-value=0.1 Score=39.46 Aligned_cols=36 Identities=11% Similarity=-0.187 Sum_probs=24.8
Q ss_pred ccCcCCCchhHHHHhhhhhhhhccC---CCCeEEEEEeC
Q 042811 91 PFGVEGVGKITSLSKSYPEFLEDEG---IFLIKMHDVVR 126 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~~~~~~---~Fd~~~wv~VS 126 (130)
|+|-.|+|||||+..+......... .=..++|+...
T Consensus 127 I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 127 AFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTE 165 (343)
T ss_dssp EECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESS
T ss_pred EECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 9999999999999988765311000 12367777665
No 479
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.19 E-value=0.029 Score=45.64 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=17.9
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|.|||||++.+..-.
T Consensus 386 ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 386 LVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EECCTTSSTTHHHHHHTTSS
T ss_pred EECCCCCcHHHHHHHHhcCc
Confidence 99999999999999987643
No 480
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.16 E-value=0.034 Score=40.85 Aligned_cols=20 Identities=15% Similarity=0.051 Sum_probs=17.6
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.++|-+|+|||||...+.+.
T Consensus 7 ~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 7 ALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEECCTTSSHHHHHHHHHCC
T ss_pred EEECCCCCCHHHHHHHHHCC
Confidence 38999999999999998764
No 481
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=93.15 E-value=0.034 Score=41.88 Aligned_cols=20 Identities=30% Similarity=0.248 Sum_probs=17.5
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
.-|-||+||||++-.+.-..
T Consensus 24 ~sgkGGvGKTTva~~LA~~l 43 (329)
T 2woo_A 24 VGGKGGVGKTTTSCSLAIQM 43 (329)
T ss_dssp EECSSSSSHHHHHHHHHHHH
T ss_pred EeCCCCCcHHHHHHHHHHHH
Confidence 77999999999999887665
No 482
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.14 E-value=0.035 Score=39.03 Aligned_cols=18 Identities=33% Similarity=0.372 Sum_probs=15.8
Q ss_pred ccCcCCCchhHHHHhh-hh
Q 042811 91 PFGVEGVGKITSLSKS-YP 108 (130)
Q Consensus 91 I~GmGGvGKTTLak~v-~~ 108 (130)
|.|-.|+|||||+.++ ++
T Consensus 35 i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 35 LTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EECCTTSSHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHH
Confidence 9999999999999875 44
No 483
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=93.14 E-value=0.034 Score=42.20 Aligned_cols=20 Identities=30% Similarity=0.255 Sum_probs=17.5
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
+-|-||+||||++..+.-..
T Consensus 21 ~sgkGGvGKTt~a~~lA~~l 40 (334)
T 3iqw_A 21 VGGKGGVGKTTTSCSLAIQL 40 (334)
T ss_dssp EECSTTSSHHHHHHHHHHHH
T ss_pred EeCCCCccHHHHHHHHHHHH
Confidence 78999999999999887655
No 484
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.11 E-value=0.071 Score=41.75 Aligned_cols=21 Identities=19% Similarity=0.045 Sum_probs=19.1
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|.|..|+||||++..+-...
T Consensus 49 li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 49 TINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEECCTTSCHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHH
Confidence 399999999999999988876
No 485
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.08 E-value=0.031 Score=43.54 Aligned_cols=17 Identities=24% Similarity=0.090 Sum_probs=15.5
Q ss_pred ccCcCCCchhHHHHhhh
Q 042811 91 PFGVEGVGKITSLSKSY 107 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~ 107 (130)
|+|-.|+|||||+..+.
T Consensus 183 I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 183 LFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEESTTSSHHHHHHHHH
T ss_pred EEcCCCCChHHHHHHHH
Confidence 99999999999999654
No 486
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=93.08 E-value=0.035 Score=43.27 Aligned_cols=20 Identities=25% Similarity=0.184 Sum_probs=18.0
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|+|||||++.+....
T Consensus 185 ivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 185 IVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EECSTTSSHHHHHHHHHTST
T ss_pred EECCCCCCHHHHHHHHhCCc
Confidence 99999999999999987653
No 487
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.04 E-value=0.04 Score=38.78 Aligned_cols=20 Identities=35% Similarity=0.501 Sum_probs=17.1
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|=|.-|+||||+++.+.+..
T Consensus 7 ~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 7 FEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EECCTTSCHHHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHHHH
Confidence 45899999999999988765
No 488
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=93.01 E-value=0.038 Score=40.48 Aligned_cols=19 Identities=21% Similarity=0.113 Sum_probs=16.1
Q ss_pred cCcCCCchhHHHHhhhhhh
Q 042811 92 FGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 92 ~GmGGvGKTTLak~v~~~~ 110 (130)
-+-||+||||++..+..-.
T Consensus 11 s~KGGvGKTT~a~nLA~~L 29 (286)
T 2xj4_A 11 NEKGGAGKSTIAVHLVTAL 29 (286)
T ss_dssp CSSSCTTHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 3689999999999987765
No 489
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=93.01 E-value=0.036 Score=42.01 Aligned_cols=21 Identities=29% Similarity=0.086 Sum_probs=18.1
Q ss_pred cccCcCCCchhHHHHhhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~~ 110 (130)
.|+|..|+|||||+..+.+..
T Consensus 171 ~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 171 VIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp EEECSTTSSHHHHHHHHCSSC
T ss_pred EEECCCCCCHHHHHHHHhCCC
Confidence 399999999999999987643
No 490
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=92.98 E-value=0.039 Score=38.78 Aligned_cols=19 Identities=26% Similarity=0.272 Sum_probs=16.0
Q ss_pred cCcCCCchhHHHHhhhhhh
Q 042811 92 FGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 92 ~GmGGvGKTTLak~v~~~~ 110 (130)
-+-||+||||++-.+-.-.
T Consensus 9 s~kgGvGKTt~a~~LA~~l 27 (237)
T 1g3q_A 9 SGKGGTGKTTVTANLSVAL 27 (237)
T ss_dssp CSSTTSSHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 3579999999999987765
No 491
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=92.97 E-value=0.033 Score=40.73 Aligned_cols=18 Identities=22% Similarity=-0.123 Sum_probs=15.4
Q ss_pred CcCCCchhHHHHhhhhhh
Q 042811 93 GVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 93 GmGGvGKTTLak~v~~~~ 110 (130)
+-||+||||++-.+-.-.
T Consensus 44 ~KGGvGKTT~a~nLA~~l 61 (298)
T 2oze_A 44 FKGGVGKSKLSTMFAYLT 61 (298)
T ss_dssp SSSSSSHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHH
Confidence 489999999999987655
No 492
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=92.95 E-value=0.039 Score=42.49 Aligned_cols=20 Identities=25% Similarity=0.189 Sum_probs=17.5
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.|+|..|+|||||...+.+.
T Consensus 5 ~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 5 GIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEECCSSSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHhCC
Confidence 38999999999999998664
No 493
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.89 E-value=0.033 Score=45.25 Aligned_cols=20 Identities=25% Similarity=0.215 Sum_probs=17.9
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|+|..|.|||||++.+..-.
T Consensus 374 ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 374 VLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EECSSSSSHHHHHHTTTTSS
T ss_pred EECCCCCCHHHHHHHHhCCc
Confidence 99999999999999987643
No 494
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=92.86 E-value=0.038 Score=40.11 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=17.9
Q ss_pred ccccCcCCCchhHHHHhhhhh
Q 042811 89 NWPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 89 l~I~GmGGvGKTTLak~v~~~ 109 (130)
+.++|-.|+|||||...+.+.
T Consensus 4 I~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 4 ALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEESTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 347899999999999998765
No 495
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=92.84 E-value=0.04 Score=42.26 Aligned_cols=18 Identities=33% Similarity=0.608 Sum_probs=17.1
Q ss_pred ccCcCCCchhHHHHhhhh
Q 042811 91 PFGVEGVGKITSLSKSYP 108 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~ 108 (130)
|+|..|.|||||+..|+-
T Consensus 31 i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 31 IYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCChhHHHHHHHH
Confidence 999999999999999984
No 496
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=92.82 E-value=0.044 Score=39.79 Aligned_cols=20 Identities=20% Similarity=0.120 Sum_probs=17.4
Q ss_pred cccCcCCCchhHHHHhhhhh
Q 042811 90 WPFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 90 ~I~GmGGvGKTTLak~v~~~ 109 (130)
.++|-.|+|||||...+.+.
T Consensus 9 ~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 9 ALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEECCTTSSHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHCC
Confidence 38999999999999998663
No 497
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=92.81 E-value=0.035 Score=42.30 Aligned_cols=20 Identities=35% Similarity=0.265 Sum_probs=17.3
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
.-|-||+||||++-.+--..
T Consensus 23 ~sgKGGvGKTTvaanLA~~l 42 (354)
T 2woj_A 23 VGGKGGVGKTTSSCSIAIQM 42 (354)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred EeCCCCCcHHHHHHHHHHHH
Confidence 67999999999998877655
No 498
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=92.81 E-value=0.041 Score=42.74 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=17.3
Q ss_pred ccCcCCCchhHHHHhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPE 109 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~ 109 (130)
|+|..|.|||||+..|+--
T Consensus 31 i~G~nG~GKstll~ai~~~ 49 (430)
T 1w1w_A 31 IIGPNGSGKSNMMDAISFV 49 (430)
T ss_dssp EECSTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHhh
Confidence 9999999999999998753
No 499
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.80 E-value=0.035 Score=44.33 Aligned_cols=16 Identities=25% Similarity=0.183 Sum_probs=15.2
Q ss_pred ccCcCCCchhHHHHhh
Q 042811 91 PFGVEGVGKITSLSKS 106 (130)
Q Consensus 91 I~GmGGvGKTTLak~v 106 (130)
|+|..|+|||||++.+
T Consensus 44 l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 44 VSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEESTTSSHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHH
Confidence 9999999999999994
No 500
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.80 E-value=0.047 Score=38.15 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=16.4
Q ss_pred ccCcCCCchhHHHHhhhhhh
Q 042811 91 PFGVEGVGKITSLSKSYPEF 110 (130)
Q Consensus 91 I~GmGGvGKTTLak~v~~~~ 110 (130)
|=|.-|+||||+++.+.+..
T Consensus 5 ~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 5 FEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EECSTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 34889999999999987654
Done!