Query 042813
Match_columns 250
No_of_seqs 126 out of 305
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 09:45:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042813.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042813hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03195 DUF260: Protein of un 100.0 1.2E-49 2.6E-54 315.8 10.2 101 40-141 1-101 (101)
2 COG3416 Uncharacterized protei 84.3 7.1 0.00015 36.1 8.6 66 81-146 11-76 (233)
3 PRK10265 chaperone-modulator p 60.7 17 0.00037 28.8 4.4 31 114-144 67-97 (101)
4 PF09006 Surfac_D-trimer: Lung 60.1 18 0.00039 26.1 4.0 28 120-147 1-28 (46)
5 PF09849 DUF2076: Uncharacteri 58.9 28 0.0006 32.3 6.1 62 82-143 12-73 (247)
6 PF06305 DUF1049: Protein of u 57.4 24 0.00051 25.1 4.3 27 119-145 42-68 (68)
7 PF07106 TBPIP: Tat binding pr 54.0 9.2 0.0002 32.1 2.0 77 68-144 21-105 (169)
8 PF06698 DUF1192: Protein of u 53.2 28 0.00061 26.0 4.2 27 120-146 23-49 (59)
9 PF05308 Mito_fiss_reg: Mitoch 52.4 14 0.0003 34.3 3.0 20 125-144 122-141 (253)
10 PF13334 DUF4094: Domain of un 48.4 17 0.00037 29.0 2.6 23 117-139 72-94 (95)
11 PLN02523 galacturonosyltransfe 48.0 69 0.0015 33.2 7.4 64 84-152 145-210 (559)
12 cd04766 HTH_HspR Helix-Turn-He 45.6 38 0.00083 25.6 4.1 25 118-142 65-89 (91)
13 PF13591 MerR_2: MerR HTH fami 42.4 31 0.00067 26.3 3.1 24 116-139 61-84 (84)
14 PF11333 DUF3135: Protein of u 41.1 1.3E+02 0.0027 23.7 6.4 64 67-134 17-82 (83)
15 PF12097 DUF3573: Protein of u 40.8 31 0.00067 34.1 3.5 22 119-140 43-64 (383)
16 KOG1655 Protein involved in va 38.9 69 0.0015 29.6 5.2 54 74-147 2-55 (218)
17 COG5509 Uncharacterized small 38.4 54 0.0012 25.2 3.8 24 120-143 27-50 (65)
18 PRK10803 tol-pal system protei 35.9 39 0.00086 30.8 3.3 33 118-150 54-86 (263)
19 cd01111 HTH_MerD Helix-Turn-He 35.6 1.7E+02 0.0036 23.2 6.5 28 116-143 78-105 (107)
20 PRK00295 hypothetical protein; 34.0 1.2E+02 0.0027 22.6 5.2 27 118-144 26-52 (68)
21 PF10883 DUF2681: Protein of u 32.6 83 0.0018 25.2 4.2 29 120-148 32-60 (87)
22 PRK04406 hypothetical protein; 30.1 1.4E+02 0.0031 22.8 5.0 25 118-142 32-56 (75)
23 PLN02742 Probable galacturonos 30.0 2E+02 0.0044 29.8 7.4 57 92-152 132-188 (534)
24 PF03242 LEA_3: Late embryogen 29.6 19 0.00041 28.9 0.2 20 102-121 58-77 (93)
25 PRK02119 hypothetical protein; 29.4 1.6E+02 0.0034 22.4 5.1 26 118-143 30-55 (73)
26 PRK02793 phi X174 lysis protei 29.1 1.6E+02 0.0035 22.2 5.1 25 119-143 30-54 (72)
27 PRK00888 ftsB cell division pr 29.0 83 0.0018 25.3 3.8 26 119-144 28-53 (105)
28 PRK00846 hypothetical protein; 28.4 1.6E+02 0.0035 23.0 5.1 27 118-144 34-60 (77)
29 PF12325 TMF_TATA_bd: TATA ele 26.1 1.3E+02 0.0028 25.1 4.4 30 115-144 13-42 (120)
30 PF05120 GvpG: Gas vesicle pro 25.0 84 0.0018 24.6 3.0 37 112-148 8-44 (79)
31 PF15300 INT_SG_DDX_CT_C: INTS 24.9 77 0.0017 24.1 2.7 27 80-106 23-51 (65)
32 KOG4552 Vitamin-D-receptor int 24.5 1.9E+02 0.0041 27.3 5.7 59 71-137 46-107 (272)
33 PF14282 FlxA: FlxA-like prote 24.5 1.2E+02 0.0025 24.3 3.8 22 120-141 53-74 (106)
34 PF04977 DivIC: Septum formati 24.3 1.4E+02 0.003 21.3 3.9 22 120-141 19-40 (80)
35 PF14197 Cep57_CLD_2: Centroso 24.2 1.5E+02 0.0033 22.3 4.2 32 115-146 37-68 (69)
36 PHA02562 46 endonuclease subun 23.4 1.2E+02 0.0026 29.4 4.4 25 57-82 141-165 (562)
37 PF04102 SlyX: SlyX; InterPro 22.9 1.1E+02 0.0025 22.6 3.3 26 119-144 26-51 (69)
38 PF04706 Dickkopf_N: Dickkopf 22.5 51 0.0011 23.9 1.3 16 39-54 21-36 (52)
39 PF04977 DivIC: Septum formati 21.4 2.1E+02 0.0046 20.3 4.4 27 118-144 24-50 (80)
40 PF05546 She9_MDM33: She9 / Md 21.3 2.6E+02 0.0056 25.7 5.8 56 98-155 14-69 (207)
41 COG5509 Uncharacterized small 21.0 1.1E+02 0.0023 23.5 2.8 20 119-138 33-52 (65)
42 PRK00736 hypothetical protein; 20.9 2.5E+02 0.0055 20.9 4.8 25 119-143 27-51 (68)
No 1
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=100.00 E-value=1.2e-49 Score=315.77 Aligned_cols=101 Identities=57% Similarity=1.006 Sum_probs=99.2
Q ss_pred CChhhHHhhhCCCCCCcCCCCCCCchhhHHHHHHHHhhchhhHHHHHhcCCcccHHHHHHHHHHHHhhcccCCCCchHHH
Q 042813 40 PCGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVTISYEAQARLSDPVYGCVST 119 (250)
Q Consensus 40 ~CAACK~lRRkC~~dCilAPYFPadq~~~rF~~vHkVFG~SNV~KmLq~lpp~~R~dA~~SLvYEA~aR~rDPVyGCvGi 119 (250)
+|||||||||||+++|+||||||+++ +++|++||||||++||+|||+++++++|+++|+||+|||++|.+||||||+|+
T Consensus 1 ~CaaCk~lRr~C~~~C~laPyFP~~~-~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~ 79 (101)
T PF03195_consen 1 PCAACKHLRRRCSPDCVLAPYFPADQ-PQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGI 79 (101)
T ss_pred CChHHHHHhCCCCCCCcCCCCCChhH-HHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHH
Confidence 69999999999999999999999998 79999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 042813 120 ILALQQQVASLQAELTMVQNQL 141 (250)
Q Consensus 120 I~~LQ~QI~~lqaELa~vq~qL 141 (250)
|+.|+|||+++++||+.++++|
T Consensus 80 i~~L~~ql~~~~~el~~~~~~l 101 (101)
T PF03195_consen 80 ISQLQQQLQQLQAELALVRAQL 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHccC
Confidence 9999999999999999999875
No 2
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.30 E-value=7.1 Score=36.12 Aligned_cols=66 Identities=17% Similarity=0.200 Sum_probs=57.6
Q ss_pred hHHHHHhcCCcccHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 042813 81 NVSKLLLHIPVNRRQDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELTMVQNQLLNSRF 146 (250)
Q Consensus 81 NV~KmLq~lpp~~R~dA~~SLvYEA~aR~rDPVyGCvGiI~~LQ~QI~~lqaELa~vq~qLa~~r~ 146 (250)
|+..-|+......|+..+..||-||-++.-|--|=-+-.|..+++-|+.++.+|+.++.+|+.+..
T Consensus 11 ~lf~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~ 76 (233)
T COG3416 11 NLFHRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAILQA 76 (233)
T ss_pred HHHHHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344456677778999999999999999999999999999999999999999999999999876554
No 3
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=60.67 E-value=17 Score=28.76 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=27.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 042813 114 YGCVSTILALQQQVASLQAELTMVQNQLLNS 144 (250)
Q Consensus 114 yGCvGiI~~LQ~QI~~lqaELa~vq~qLa~~ 144 (250)
+-.+++|..|-.||+.|+.|+..++++|..+
T Consensus 67 ~~gialvl~LLd~i~~Lr~el~~L~~~l~~~ 97 (101)
T PRK10265 67 WPGIAVALTLLDEIAHLKQENRLLRQRLSRF 97 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999999999999999988644
No 4
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=60.14 E-value=18 Score=26.07 Aligned_cols=28 Identities=32% Similarity=0.358 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 042813 120 ILALQQQVASLQAELTMVQNQLLNSRFV 147 (250)
Q Consensus 120 I~~LQ~QI~~lqaELa~vq~qLa~~r~~ 147 (250)
|..|.+|+..|+.+|..+|+-+..++-+
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKKa 28 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKKA 28 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999988766543
No 5
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=58.90 E-value=28 Score=32.25 Aligned_cols=62 Identities=23% Similarity=0.235 Sum_probs=55.5
Q ss_pred HHHHHhcCCcccHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042813 82 VSKLLLHIPVNRRQDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELTMVQNQLLN 143 (250)
Q Consensus 82 V~KmLq~lpp~~R~dA~~SLvYEA~aR~rDPVyGCvGiI~~LQ~QI~~lqaELa~vq~qLa~ 143 (250)
+..-|+.+....|+--++.||-++-.|.-|-+|=-+-.|+.++.=|+.+++.++.|+.+|..
T Consensus 12 lf~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 12 LFSRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33456777777899999999999999999999999999999999999999999999999843
No 6
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=57.38 E-value=24 Score=25.09 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhch
Q 042813 119 TILALQQQVASLQAELTMVQNQLLNSR 145 (250)
Q Consensus 119 iI~~LQ~QI~~lqaELa~vq~qLa~~r 145 (250)
..+.+++++..++.+++.++.+++..|
T Consensus 42 ~~~~~r~~~~~~~k~l~~le~e~~~lr 68 (68)
T PF06305_consen 42 SRLRLRRRIRRLRKELKKLEKELEQLR 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 346678899999999999999887654
No 7
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=54.03 E-value=9.2 Score=32.15 Aligned_cols=77 Identities=18% Similarity=0.167 Sum_probs=44.5
Q ss_pred HHHHHHHHhhchhhHHHHHhcCCcccHH---HHHHHHHHHHhhcccCCCCch-----HHHHHHHHHHHHHHHHHHHHHHH
Q 042813 68 ARFAAVHKVFGASNVSKLLLHIPVNRRQ---DAVVTISYEAQARLSDPVYGC-----VSTILALQQQVASLQAELTMVQN 139 (250)
Q Consensus 68 ~rF~~vHkVFG~SNV~KmLq~lpp~~R~---dA~~SLvYEA~aR~rDPVyGC-----vGiI~~LQ~QI~~lqaELa~vq~ 139 (250)
.=|.|.|.-||-..|.|.|..|-...+- ..=.+.||=++--.-+-+..- =.-|..|+.++..++.++..++.
T Consensus 21 di~~nL~~~~~K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~ 100 (169)
T PF07106_consen 21 DIFDNLHNKVGKTAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEA 100 (169)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999988544221 223345565544333212211 12355555555555555555555
Q ss_pred HHHhc
Q 042813 140 QLLNS 144 (250)
Q Consensus 140 qLa~~ 144 (250)
+|..+
T Consensus 101 eL~~L 105 (169)
T PF07106_consen 101 ELASL 105 (169)
T ss_pred HHHHH
Confidence 55433
No 8
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=53.18 E-value=28 Score=25.98 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchh
Q 042813 120 ILALQQQVASLQAELTMVQNQLLNSRF 146 (250)
Q Consensus 120 I~~LQ~QI~~lqaELa~vq~qLa~~r~ 146 (250)
|-.|+..|..|++|++.+++++..-+.
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~a 49 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKSA 49 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999998875443
No 9
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=52.40 E-value=14 Score=34.28 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 042813 125 QQVASLQAELTMVQNQLLNS 144 (250)
Q Consensus 125 ~QI~~lqaELa~vq~qLa~~ 144 (250)
++|..|+.||+.+|+|||.+
T Consensus 122 qKIsALEdELs~LRaQIA~I 141 (253)
T PF05308_consen 122 QKISALEDELSRLRAQIAKI 141 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999754
No 10
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=48.43 E-value=17 Score=29.02 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 042813 117 VSTILALQQQVASLQAELTMVQN 139 (250)
Q Consensus 117 vGiI~~LQ~QI~~lqaELa~vq~ 139 (250)
.-.|..|...|..|+.||+.+|+
T Consensus 72 h~aIq~LdKtIS~LEMELAaARa 94 (95)
T PF13334_consen 72 HEAIQSLDKTISSLEMELAAARA 94 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44677888888889998888875
No 11
>PLN02523 galacturonosyltransferase
Probab=47.99 E-value=69 Score=33.25 Aligned_cols=64 Identities=13% Similarity=0.196 Sum_probs=48.8
Q ss_pred HHHhcCCcc--cHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhc
Q 042813 84 KLLLHIPVN--RRQDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELTMVQNQLLNSRFVMANAL 152 (250)
Q Consensus 84 KmLq~lpp~--~R~dA~~SLvYEA~aR~rDPVyGCvGiI~~LQ~QI~~lqaELa~vq~qLa~~r~~~a~~~ 152 (250)
..|++|+++ +|..+|..++++|.. +|-|..+|.+|+..|..++.++...+.|-+......+..+
T Consensus 145 ~~~~~~~~~~~~~~k~~~~~~~~a~~-----~~d~~~~~~kl~~~~~~~e~~~~~~~~q~~~~~~laa~t~ 210 (559)
T PLN02523 145 DVLRQFEKEVKERVKVARQMIAESKE-----SFDNQLKIQKLKDTIFAVNEQLTKAKKNGAFASLIAAKSI 210 (559)
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHHh-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 355677653 688899999999993 5557789999999999999999999877655444434433
No 12
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=45.57 E-value=38 Score=25.64 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042813 118 STILALQQQVASLQAELTMVQNQLL 142 (250)
Q Consensus 118 GiI~~LQ~QI~~lqaELa~vq~qLa 142 (250)
..|..|..+++.++++|+.++++|-
T Consensus 65 ~~~l~l~~~~~~l~~~l~~l~~~~~ 89 (91)
T cd04766 65 KRILELEEELAELRAELDELRARLR 89 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445599999999999999998873
No 13
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=42.36 E-value=31 Score=26.27 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 042813 116 CVSTILALQQQVASLQAELTMVQN 139 (250)
Q Consensus 116 CvGiI~~LQ~QI~~lqaELa~vq~ 139 (250)
.+++|.+|-.+|..|+.||..+++
T Consensus 61 gi~lil~LLd~i~~L~~el~~L~~ 84 (84)
T PF13591_consen 61 GIALILDLLDRIEQLRRELRELRR 84 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 478999999999999999988763
No 14
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=41.06 E-value=1.3e+02 Score=23.66 Aligned_cols=64 Identities=17% Similarity=0.242 Sum_probs=48.8
Q ss_pred hHHHHHHHHhhchhhHHHHHhcCCccc--HHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHH
Q 042813 67 AARFAAVHKVFGASNVSKLLLHIPVNR--RQDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAEL 134 (250)
Q Consensus 67 ~~rF~~vHkVFG~SNV~KmLq~lpp~~--R~dA~~SLvYEA~aR~rDPVyGCvGiI~~LQ~QI~~lqaEL 134 (250)
|+.|....+ .-|-.++...|++. |-.++.+-|=---.|.++|+..|+-+...+..++..+...|
T Consensus 17 Pe~fe~lr~----~~~ee~I~~a~~~~q~rL~~lQ~~Id~~~~~~knP~~~~~~l~~~m~~~~~~l~~~l 82 (83)
T PF11333_consen 17 PEAFEQLRQ----ELIEEMIESAPEEMQPRLRALQFHIDMQRSRCKNPLHRCVLLSRMMYEQFYKLNDAL 82 (83)
T ss_pred HHHHHHHHH----HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHhh
Confidence 688887664 45667888888875 44456666656667889999999999999999988776554
No 15
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=40.80 E-value=31 Score=34.11 Aligned_cols=22 Identities=41% Similarity=0.575 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 042813 119 TILALQQQVASLQAELTMVQNQ 140 (250)
Q Consensus 119 iI~~LQ~QI~~lqaELa~vq~q 140 (250)
.|..||+||.+||+||..++.+
T Consensus 43 ~i~~Lq~QI~~Lq~ei~~l~~~ 64 (383)
T PF12097_consen 43 EISELQKQIQQLQAEINQLEEQ 64 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5889999999999999999877
No 16
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.91 E-value=69 Score=29.59 Aligned_cols=54 Identities=22% Similarity=0.381 Sum_probs=33.6
Q ss_pred HHhhchhhHHHHHhcCCcccHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 042813 74 HKVFGASNVSKLLLHIPVNRRQDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELTMVQNQLLNSRFV 147 (250)
Q Consensus 74 HkVFG~SNV~KmLq~lpp~~R~dA~~SLvYEA~aR~rDPVyGCvGiI~~LQ~QI~~lqaELa~vq~qLa~~r~~ 147 (250)
|||||..|- ..|+..-.++..+|=--+ -.+..+|..|-+||...+.||.+.|--
T Consensus 2 nRiFG~~k~-----k~p~psL~dai~~v~~r~---------------dSve~KIskLDaeL~k~~~Qi~k~R~g 55 (218)
T KOG1655|consen 2 NRIFGRGKP-----KEPPPSLQDAIDSVNKRS---------------DSVEKKISKLDAELCKYKDQIKKTRPG 55 (218)
T ss_pred cccccCCCC-----CCCChhHHHHHHHHHHhh---------------hhHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 689998862 345555555665552221 235667777777777777777766654
No 17
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=38.37 E-value=54 Score=25.16 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 042813 120 ILALQQQVASLQAELTMVQNQLLN 143 (250)
Q Consensus 120 I~~LQ~QI~~lqaELa~vq~qLa~ 143 (250)
|-.|.+.|..|++|++.+++++..
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~k 50 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAK 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778888888888888888753
No 18
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=35.86 E-value=39 Score=30.83 Aligned_cols=33 Identities=18% Similarity=0.388 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q 042813 118 STILALQQQVASLQAELTMVQNQLLNSRFVMAN 150 (250)
Q Consensus 118 GiI~~LQ~QI~~lqaELa~vq~qLa~~r~~~a~ 150 (250)
..+..|++||+.++.|+..+|.++.........
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~ 86 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQ 86 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 467899999999999999999988766555444
No 19
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=35.58 E-value=1.7e+02 Score=23.25 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042813 116 CVSTILALQQQVASLQAELTMVQNQLLN 143 (250)
Q Consensus 116 CvGiI~~LQ~QI~~lqaELa~vq~qLa~ 143 (250)
|...+..+..+|+....+|..++.+|..
T Consensus 78 ~~~~~~~~~~~l~~~~~~L~~l~~~L~~ 105 (107)
T cd01111 78 PEACLAQLRQKIEVRRAALNALTTQLAE 105 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888888899999999999988863
No 20
>PRK00295 hypothetical protein; Provisional
Probab=34.01 E-value=1.2e+02 Score=22.60 Aligned_cols=27 Identities=11% Similarity=0.203 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 042813 118 STILALQQQVASLQAELTMVQNQLLNS 144 (250)
Q Consensus 118 GiI~~LQ~QI~~lqaELa~vq~qLa~~ 144 (250)
.+|...+++|..++.+|..+..+|...
T Consensus 26 ~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 26 DVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356667777777777777777777543
No 21
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=32.56 E-value=83 Score=25.15 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhhh
Q 042813 120 ILALQQQVASLQAELTMVQNQLLNSRFVM 148 (250)
Q Consensus 120 I~~LQ~QI~~lqaELa~vq~qLa~~r~~~ 148 (250)
|-.|+.++++++.|.+.+.+++.+++...
T Consensus 32 ~~kL~~en~qlk~Ek~~~~~qvkn~~vrq 60 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVAETQVKNAKVRQ 60 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566667777777777777777666554
No 22
>PRK04406 hypothetical protein; Provisional
Probab=30.14 E-value=1.4e+02 Score=22.82 Aligned_cols=25 Identities=12% Similarity=0.221 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042813 118 STILALQQQVASLQAELTMVQNQLL 142 (250)
Q Consensus 118 GiI~~LQ~QI~~lqaELa~vq~qLa 142 (250)
.+|...+++|..|+.+|..+..+|.
T Consensus 32 ~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 32 DALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777777777777766664
No 23
>PLN02742 Probable galacturonosyltransferase
Probab=29.97 E-value=2e+02 Score=29.82 Aligned_cols=57 Identities=21% Similarity=0.269 Sum_probs=44.3
Q ss_pred ccHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhc
Q 042813 92 NRRQDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELTMVQNQLLNSRFVMANAL 152 (250)
Q Consensus 92 ~~R~dA~~SLvYEA~aR~rDPVyGCvGiI~~LQ~QI~~lqaELa~vq~qLa~~r~~~a~~~ 152 (250)
..+-.+|+.++++|.-- -|.|-.+|.+|+..|..++.|+...+.|-+......+..+
T Consensus 132 ~~~~~~m~~~i~~ak~~----~~d~~~~~~klr~~l~~~e~~~~~~~~q~~~~~~laa~t~ 188 (534)
T PLN02742 132 EPIIRDLAALIYQAQDL----HYDSATTIMTLKAHIQALEERANAATVQSTKFGQLAAEAL 188 (534)
T ss_pred HHHHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 46778899999988654 4569999999999999999999998877655544444444
No 24
>PF03242 LEA_3: Late embryogenesis abundant protein; InterPro: IPR004926 Late-embryogenesis abundant (LEA) genes encode a diverse group of proteins that accumulate to high levels during the maturation phase of seed development []. This group includes LEA-5 [], whose expression is induced by salt, drought and heat stress [], and related proteins. ; GO: 0006950 response to stress
Probab=29.61 E-value=19 Score=28.90 Aligned_cols=20 Identities=30% Similarity=0.322 Sum_probs=16.7
Q ss_pred HHHHhhcccCCCCchHHHHH
Q 042813 102 SYEAQARLSDPVYGCVSTIL 121 (250)
Q Consensus 102 vYEA~aR~rDPVyGCvGiI~ 121 (250)
-++-..|..|||-|+|--..
T Consensus 58 ~~~~~~W~pDPvTGyyrPen 77 (93)
T PF03242_consen 58 SKEKSSWMPDPVTGYYRPEN 77 (93)
T ss_pred cccccccccCCCCccccCCC
Confidence 66778999999999987654
No 25
>PRK02119 hypothetical protein; Provisional
Probab=29.40 E-value=1.6e+02 Score=22.39 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042813 118 STILALQQQVASLQAELTMVQNQLLN 143 (250)
Q Consensus 118 GiI~~LQ~QI~~lqaELa~vq~qLa~ 143 (250)
.+|...+++|..++.+|..+..+|..
T Consensus 30 ~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 30 QALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666667777777777777777653
No 26
>PRK02793 phi X174 lysis protein; Provisional
Probab=29.09 E-value=1.6e+02 Score=22.22 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 042813 119 TILALQQQVASLQAELTMVQNQLLN 143 (250)
Q Consensus 119 iI~~LQ~QI~~lqaELa~vq~qLa~ 143 (250)
+|...+++|..++.+|..+..+|..
T Consensus 30 ~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 30 TVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566677777777777777777754
No 27
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=29.04 E-value=83 Score=25.26 Aligned_cols=26 Identities=15% Similarity=0.055 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 042813 119 TILALQQQVASLQAELTMVQNQLLNS 144 (250)
Q Consensus 119 iI~~LQ~QI~~lqaELa~vq~qLa~~ 144 (250)
.+..++++++.++.|++.++++-...
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L 53 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQL 53 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777776666554433
No 28
>PRK00846 hypothetical protein; Provisional
Probab=28.42 E-value=1.6e+02 Score=23.02 Aligned_cols=27 Identities=7% Similarity=-0.042 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 042813 118 STILALQQQVASLQAELTMVQNQLLNS 144 (250)
Q Consensus 118 GiI~~LQ~QI~~lqaELa~vq~qLa~~ 144 (250)
.+|...+++|..++.+|..+..+|...
T Consensus 34 ~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 34 EALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777788888877777777533
No 29
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=26.15 E-value=1.3e+02 Score=25.09 Aligned_cols=30 Identities=30% Similarity=0.359 Sum_probs=22.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 042813 115 GCVSTILALQQQVASLQAELTMVQNQLLNS 144 (250)
Q Consensus 115 GCvGiI~~LQ~QI~~lqaELa~vq~qLa~~ 144 (250)
..+++|-.|+.+|.++..|+..++.+|+..
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l 42 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQEELARL 42 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888777543
No 30
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=24.99 E-value=84 Score=24.59 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=20.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhh
Q 042813 112 PVYGCVSTILALQQQVASLQAELTMVQNQLLNSRFVM 148 (250)
Q Consensus 112 PVyGCvGiI~~LQ~QI~~lqaELa~vq~qLa~~r~~~ 148 (250)
||.|.+-+.-+++.+.+.---.-+.++.+|+....++
T Consensus 8 Pvrgv~wv~e~I~~~Ae~E~~Dp~~i~~~L~~L~~~~ 44 (79)
T PF05120_consen 8 PVRGVVWVAEQIQEQAERELYDPAAIRRELAELQEAL 44 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 5555555555555554443334567777776555544
No 31
>PF15300 INT_SG_DDX_CT_C: INTS6/SAGE1/DDX26B/CT45 C-terminus
Probab=24.89 E-value=77 Score=24.07 Aligned_cols=27 Identities=33% Similarity=0.420 Sum_probs=23.7
Q ss_pred hhHHHHHhcC--CcccHHHHHHHHHHHHh
Q 042813 80 SNVSKLLLHI--PVNRRQDAVVTISYEAQ 106 (250)
Q Consensus 80 SNV~KmLq~l--pp~~R~dA~~SLvYEA~ 106 (250)
+.|.++|+.+ |.+.|...+..++.||.
T Consensus 23 e~iF~lL~~vqG~~~~r~~fv~~~IkEA~ 51 (65)
T PF15300_consen 23 EKIFKLLEQVQGPLEVRKQFVEMIIKEAA 51 (65)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 4688999988 67899999999999995
No 32
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=24.54 E-value=1.9e+02 Score=27.27 Aligned_cols=59 Identities=22% Similarity=0.302 Sum_probs=39.7
Q ss_pred HHHHHhhchh--hHHHHHhcCCc-ccHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 042813 71 AAVHKVFGAS--NVSKLLLHIPV-NRRQDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELTMV 137 (250)
Q Consensus 71 ~~vHkVFG~S--NV~KmLq~lpp-~~R~dA~~SLvYEA~aR~rDPVyGCvGiI~~LQ~QI~~lqaELa~v 137 (250)
.++-++|-.. -+.+||+-++. .+|+.+|+.|--+.+.|. ..|.+||.++...+.-|..+
T Consensus 46 v~il~Ll~~kd~ef~~llkla~eq~k~e~~m~~Lea~VEkrD--------~~IQqLqk~LK~aE~iLtta 107 (272)
T KOG4552|consen 46 VNILKLLDSKDDEFKTLLKLAPEQQKREQLMRTLEAHVEKRD--------EVIQQLQKNLKSAEVILTTA 107 (272)
T ss_pred HHHHHHHHhccHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHH
Confidence 3455555432 35566666654 578999999866655554 36999999998877766554
No 33
>PF14282 FlxA: FlxA-like protein
Probab=24.53 E-value=1.2e+02 Score=24.31 Aligned_cols=22 Identities=41% Similarity=0.504 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 042813 120 ILALQQQVASLQAELTMVQNQL 141 (250)
Q Consensus 120 I~~LQ~QI~~lqaELa~vq~qL 141 (250)
+-.|+.||..|+++|+.++.+.
T Consensus 53 ~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 53 IQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 34
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=24.28 E-value=1.4e+02 Score=21.28 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 042813 120 ILALQQQVASLQAELTMVQNQL 141 (250)
Q Consensus 120 I~~LQ~QI~~lqaELa~vq~qL 141 (250)
+..++.++..++.+++.++.+.
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~ 40 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKEN 40 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555554443
No 35
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=24.19 E-value=1.5e+02 Score=22.34 Aligned_cols=32 Identities=13% Similarity=0.091 Sum_probs=22.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 042813 115 GCVSTILALQQQVASLQAELTMVQNQLLNSRF 146 (250)
Q Consensus 115 GCvGiI~~LQ~QI~~lqaELa~vq~qLa~~r~ 146 (250)
|.+.-+...-..+..|+.|+..++.+|..+|.
T Consensus 37 ~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 37 SAERQLGDAYEENNKLKEENEALRKELEELRA 68 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44555555667788888888888888876653
No 36
>PHA02562 46 endonuclease subunit; Provisional
Probab=23.39 E-value=1.2e+02 Score=29.41 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=12.2
Q ss_pred CCCCCCCchhhHHHHHHHHhhchhhH
Q 042813 57 FAPHFGSDQGAARFAAVHKVFGASNV 82 (250)
Q Consensus 57 lAPYFPadq~~~rF~~vHkVFG~SNV 82 (250)
|.|+++... ..+-..+.++||....
T Consensus 141 f~~f~~~~~-~er~~il~~l~~~~~~ 165 (562)
T PHA02562 141 YVPFMQLSA-PARRKLVEDLLDISVL 165 (562)
T ss_pred hhhHhcCCh-HhHHHHHHHHhCCHHH
Confidence 444444332 3455556666665543
No 37
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=22.88 E-value=1.1e+02 Score=22.59 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 042813 119 TILALQQQVASLQAELTMVQNQLLNS 144 (250)
Q Consensus 119 iI~~LQ~QI~~lqaELa~vq~qLa~~ 144 (250)
+|...+.+|..|+.+|..+..+|...
T Consensus 26 ~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 26 VVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556667777777777777776543
No 38
>PF04706 Dickkopf_N: Dickkopf N-terminal cysteine-rich region; InterPro: IPR006796 Dickkopf proteins are a class of Wnt antagonists. They possess two conserved cysteine-rich regions. This family represents the N-terminal conserved region []. The C-terminal region has been found to share significant sequence similarity to the colipase fold (IPR001981 from INTERPRO) [].; GO: 0007275 multicellular organismal development, 0030178 negative regulation of Wnt receptor signaling pathway, 0005576 extracellular region
Probab=22.52 E-value=51 Score=23.89 Aligned_cols=16 Identities=25% Similarity=0.793 Sum_probs=14.9
Q ss_pred CCChhhHHhhhCCCCC
Q 042813 39 APCGACKFLRRKCVSG 54 (250)
Q Consensus 39 ~~CAACK~lRRkC~~d 54 (250)
..|..||-+|++|..|
T Consensus 21 ~~C~~Cr~~~~rC~Rd 36 (52)
T PF04706_consen 21 SKCLPCRKRRKRCTRD 36 (52)
T ss_pred ccChhhccCCCCCCCC
Confidence 8899999999999976
No 39
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=21.41 E-value=2.1e+02 Score=20.33 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 042813 118 STILALQQQVASLQAELTMVQNQLLNS 144 (250)
Q Consensus 118 GiI~~LQ~QI~~lqaELa~vq~qLa~~ 144 (250)
.-|..|+.+++.++.+...++.++...
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346677777777777777777777654
No 40
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=21.33 E-value=2.6e+02 Score=25.70 Aligned_cols=56 Identities=23% Similarity=0.372 Sum_probs=44.6
Q ss_pred HHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhccCC
Q 042813 98 VVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELTMVQNQLLNSRFVMANALQTS 155 (250)
Q Consensus 98 ~~SLvYEA~aR~rDPVyGCvGiI~~LQ~QI~~lqaELa~vq~qLa~~r~~~a~~~q~~ 155 (250)
+.+-+..|.-++.| |-| |..|-.|+..|..++.+|+.++..+...+.+|..+++.-
T Consensus 14 lq~~i~~as~~lNd-~TG-Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~R 69 (207)
T PF05546_consen 14 LQETIFTASQALND-VTG-YSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQR 69 (207)
T ss_pred HHHHHHHHHHHHHh-ccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555444 566 999999999999999999999999999999998887554
No 41
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=20.98 E-value=1.1e+02 Score=23.55 Aligned_cols=20 Identities=35% Similarity=0.451 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042813 119 TILALQQQVASLQAELTMVQ 138 (250)
Q Consensus 119 iI~~LQ~QI~~lqaELa~vq 138 (250)
.|-.||.+|+.+++||++-.
T Consensus 33 RIalLq~EIeRlkAe~~kK~ 52 (65)
T COG5509 33 RIALLQAEIERLKAELAKKK 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 47889999999999998754
No 42
>PRK00736 hypothetical protein; Provisional
Probab=20.90 E-value=2.5e+02 Score=20.95 Aligned_cols=25 Identities=12% Similarity=0.294 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 042813 119 TILALQQQVASLQAELTMVQNQLLN 143 (250)
Q Consensus 119 iI~~LQ~QI~~lqaELa~vq~qLa~ 143 (250)
+|..-+++|..|+.+|..+..+|..
T Consensus 27 ~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 27 QLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777776653
Done!