Query 042813
Match_columns 250
No_of_seqs 126 out of 305
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 17:04:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042813.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042813hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dzn_A Coiled-coil peptide CC- 81.9 1.8 6.2E-05 27.9 3.8 29 118-146 2-30 (33)
2 2er8_A Regulatory protein Leu3 56.6 20 0.0007 24.5 5.0 17 38-54 3-19 (72)
3 4dzn_A Coiled-coil peptide CC- 46.0 18 0.00062 23.2 2.9 26 126-151 3-28 (33)
4 2xdj_A Uncharacterized protein 43.8 27 0.00092 26.3 4.1 32 118-149 20-51 (83)
5 1zme_C Proline utilization tra 42.1 25 0.00085 23.8 3.5 25 118-142 44-68 (70)
6 3r4h_A Coiled coil helix CC-TE 42.0 26 0.00089 22.6 3.2 22 121-142 5-26 (34)
7 1nkp_B MAX protein, MYC proto- 40.9 44 0.0015 24.1 4.8 34 116-149 45-78 (83)
8 1am9_A Srebp-1A, protein (ster 38.7 44 0.0015 24.4 4.5 28 116-143 48-75 (82)
9 3r4h_A Coiled coil helix CC-TE 36.2 44 0.0015 21.6 3.6 27 126-152 3-29 (34)
10 4e61_A Protein BIM1; EB1-like 35.8 55 0.0019 26.0 4.9 33 115-147 1-33 (106)
11 1hlo_A Protein (transcription 33.0 43 0.0015 24.2 3.6 25 116-140 55-79 (80)
12 3myf_A Sensor protein; HPT, hi 32.0 1.1E+02 0.0039 23.2 6.2 65 68-140 51-115 (119)
13 1lrv_A LRV, leucine-rich repea 30.1 8.3 0.00028 33.4 -0.8 56 39-101 12-74 (244)
14 1zxa_A CGMP-dependent protein 29.6 64 0.0022 23.7 4.0 33 119-151 26-58 (67)
15 2dgc_A Protein (GCN4); basic d 29.4 75 0.0026 22.4 4.3 30 118-147 30-59 (63)
16 3q0x_A Centriole protein; cent 28.5 65 0.0022 28.4 4.7 33 119-151 179-211 (228)
17 1dh3_A Transcription factor CR 28.3 80 0.0027 21.7 4.2 28 118-145 22-49 (55)
18 2yy0_A C-MYC-binding protein; 27.6 67 0.0023 22.2 3.7 20 122-141 30-49 (53)
19 3nmd_A CGMP dependent protein 27.5 84 0.0029 23.4 4.4 28 118-145 40-67 (72)
20 3ra3_B P2F; coiled coil domain 27.2 61 0.0021 20.1 3.0 23 120-142 2-24 (28)
21 1uuj_A Platelet-activating fac 25.1 30 0.001 26.6 1.6 24 119-142 59-82 (88)
22 2zvf_A Alanyl-tRNA synthetase; 24.1 2.2E+02 0.0075 22.3 6.7 47 99-145 13-59 (171)
23 1rtm_1 Mannose-binding protein 22.0 77 0.0026 23.9 3.5 20 120-139 6-25 (149)
24 3ol1_A Vimentin; structural ge 21.8 1.1E+02 0.0039 23.7 4.5 32 117-148 19-50 (119)
25 1r73_A TM1492, 50S ribosomal p 20.7 79 0.0027 22.5 3.1 24 127-150 11-34 (66)
26 1a93_B MAX protein, coiled coi 20.7 1.3E+02 0.0045 19.6 3.8 24 119-142 8-31 (34)
27 2pbi_A Regulator of G-protein 20.0 63 0.0022 30.5 3.1 69 67-135 143-236 (424)
No 1
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=81.90 E-value=1.8 Score=27.89 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 042813 118 STILALQQQVASLQAELTMVQNQLLNSRF 146 (250)
Q Consensus 118 GiI~~LQ~QI~~lqaELa~vq~qLa~~r~ 146 (250)
|.|..|+++|..|+.|++.++-+++..+.
T Consensus 2 geiaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 2 GEIAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 67888999999999999988888875543
No 2
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=56.59 E-value=20 Score=24.50 Aligned_cols=17 Identities=24% Similarity=0.585 Sum_probs=12.0
Q ss_pred CCCChhhHHhhhCCCCC
Q 042813 38 AAPCGACKFLRRKCVSG 54 (250)
Q Consensus 38 ~~~CAACK~lRRkC~~d 54 (250)
..+|..|+...-||...
T Consensus 3 ~~AC~~Cr~rK~kCd~~ 19 (72)
T 2er8_A 3 KFACVECRQQKSKCDAH 19 (72)
T ss_dssp CCCCHHHHHTTCCCCSG
T ss_pred CchhHHHHhcccCCCCC
Confidence 45788888777777653
No 3
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=46.05 E-value=18 Score=23.21 Aligned_cols=26 Identities=19% Similarity=0.464 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhhhh
Q 042813 126 QVASLQAELTMVQNQLLNSRFVMANA 151 (250)
Q Consensus 126 QI~~lqaELa~vq~qLa~~r~~~a~~ 151 (250)
+|..|+.|++.++.+++..++..+..
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888888888888777766654
No 4
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=43.83 E-value=27 Score=26.29 Aligned_cols=32 Identities=19% Similarity=0.393 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhhh
Q 042813 118 STILALQQQVASLQAELTMVQNQLLNSRFVMA 149 (250)
Q Consensus 118 GiI~~LQ~QI~~lqaELa~vq~qLa~~r~~~a 149 (250)
..++.|+.||..++.|++.++.++........
T Consensus 20 q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ 51 (83)
T 2xdj_A 20 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLN 51 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 35688899999999999888888765544433
No 5
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=42.13 E-value=25 Score=23.79 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042813 118 STILALQQQVASLQAELTMVQNQLL 142 (250)
Q Consensus 118 GiI~~LQ~QI~~lqaELa~vq~qLa 142 (250)
+.|..|+.+|..|+.+|+.++..|+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5688899999999999999888764
No 6
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=42.02 E-value=26 Score=22.61 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 042813 121 LALQQQVASLQAELTMVQNQLL 142 (250)
Q Consensus 121 ~~LQ~QI~~lqaELa~vq~qLa 142 (250)
..+++++...+.||+.++-+|+
T Consensus 5 aaikqelaaikkelaaikfela 26 (34)
T 3r4h_A 5 AAIKQELAAIKKELAAIKFELA 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455544444443
No 7
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=40.92 E-value=44 Score=24.10 Aligned_cols=34 Identities=9% Similarity=0.024 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhh
Q 042813 116 CVSTILALQQQVASLQAELTMVQNQLLNSRFVMA 149 (250)
Q Consensus 116 CvGiI~~LQ~QI~~lqaELa~vq~qLa~~r~~~a 149 (250)
.+-.|..|+.++..++.|+..++.+....+....
T Consensus 45 Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 45 ATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567999999888888888888887766555443
No 8
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=38.73 E-value=44 Score=24.44 Aligned_cols=28 Identities=18% Similarity=0.180 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042813 116 CVSTILALQQQVASLQAELTMVQNQLLN 143 (250)
Q Consensus 116 CvGiI~~LQ~QI~~lqaELa~vq~qLa~ 143 (250)
.+-.|..|+.++..|+.|+..++..+..
T Consensus 48 Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 48 AIDYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999988753
No 9
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=36.16 E-value=44 Score=21.56 Aligned_cols=27 Identities=22% Similarity=0.448 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhhhhc
Q 042813 126 QVASLQAELTMVQNQLLNSRFVMANAL 152 (250)
Q Consensus 126 QI~~lqaELa~vq~qLa~~r~~~a~~~ 152 (250)
++...+.||+.++.+|+.+++-.+..-
T Consensus 3 elaaikqelaaikkelaaikfelaaik 29 (34)
T 3r4h_A 3 ELAAIKQELAAIKKELAAIKFELAAIK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467789999999999999998877654
No 10
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=35.80 E-value=55 Score=25.98 Aligned_cols=33 Identities=12% Similarity=0.263 Sum_probs=24.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 042813 115 GCVSTILALQQQVASLQAELTMVQNQLLNSRFV 147 (250)
Q Consensus 115 GCvGiI~~LQ~QI~~lqaELa~vq~qLa~~r~~ 147 (250)
|..|.+..|+.++...+.+++.+..++..++..
T Consensus 1 ~~~~s~~al~~eL~~~~~ei~~L~~ei~eLk~~ 33 (106)
T 4e61_A 1 GPLGSLVAIQAELTKSQETIGSLNEEIEQYKGT 33 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888887777766554443
No 11
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=32.99 E-value=43 Score=24.15 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 042813 116 CVSTILALQQQVASLQAELTMVQNQ 140 (250)
Q Consensus 116 CvGiI~~LQ~QI~~lqaELa~vq~q 140 (250)
.+-.|..|+.++..++.++..++.+
T Consensus 55 Ai~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 55 ATEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567888888888888888877654
No 12
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=31.99 E-value=1.1e+02 Score=23.21 Aligned_cols=65 Identities=20% Similarity=0.288 Sum_probs=43.1
Q ss_pred HHHHHHHHhhchhhHHHHHhcCCcccHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 042813 68 ARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELTMVQNQ 140 (250)
Q Consensus 68 ~rF~~vHkVFG~SNV~KmLq~lpp~~R~dA~~SLvYEA~aR~rDPVyGCvGiI~~LQ~QI~~lqaELa~vq~q 140 (250)
.-+..+||+-|++..+..- .-..-+-..|..+|..+|+-..-..+..|..+|..+..++....++
T Consensus 51 ~l~~~aHkLkGaa~~~Ga~--------~L~~~~~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~~l~~ 115 (119)
T 3myf_A 51 TMLSTIHKLHGASCYCGVP--------TTQRLCQEIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLSQ 115 (119)
T ss_dssp HHHHHHHHHHHHHTTTTCH--------HHHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHH--------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566788888877654321 1122233557777888887777788888888887777777666555
No 13
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=30.09 E-value=8.3 Score=33.36 Aligned_cols=56 Identities=23% Similarity=0.335 Sum_probs=36.6
Q ss_pred CCChhhHHhh-----hCCCCC--CcCCCCCCCchhhHHHHHHHHhhchhhHHHHHhcCCcccHHHHHHHH
Q 042813 39 APCGACKFLR-----RKCVSG--CIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVTI 101 (250)
Q Consensus 39 ~~CAACK~lR-----RkC~~d--CilAPYFPadq~~~rF~~vHkVFG~SNV~KmLq~lpp~~R~dA~~SL 101 (250)
-.|+.|.|.- .+|.++ |+..+|=+- ..+|.+.+ ..-+..++++-.++-|..++..|
T Consensus 12 ~~c~~c~~~~~~~~~~~c~~~~~c~~~~~~~r---i~~~~~~~----p~l~~~ll~d~~~~VR~~AA~~l 74 (244)
T 1lrv_A 12 GDCRVCSFRMSLLLTGRCTPGDACVAVESGRQ---IDRFFRNN----PHLAVQYLADPFWERRAIAVRYS 74 (244)
T ss_dssp CCTTTSTTTTTTGGGTSSBTTTBCSSSSCHHH---HHHHHHHC----GGGGGGGTTCSSHHHHHHHHTTS
T ss_pred ccccCCCCcccchhcCCCCCCchHhhcCcHHH---HHHHHcCC----HHHHHHHhcCCCHHHHHHHHHhC
Confidence 6699999998 799975 999997543 34554432 22233444555566677777654
No 14
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=29.55 E-value=64 Score=23.67 Aligned_cols=33 Identities=15% Similarity=0.293 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhh
Q 042813 119 TILALQQQVASLQAELTMVQNQLLNSRFVMANA 151 (250)
Q Consensus 119 iI~~LQ~QI~~lqaELa~vq~qLa~~r~~~a~~ 151 (250)
.|..|+..+..-..|+..++.+|..++......
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~~~ 58 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHKCQSVLPVP 58 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 577888889999999999999998776665533
No 15
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=29.44 E-value=75 Score=22.43 Aligned_cols=30 Identities=13% Similarity=0.217 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 042813 118 STILALQQQVASLQAELTMVQNQLLNSRFV 147 (250)
Q Consensus 118 GiI~~LQ~QI~~lqaELa~vq~qLa~~r~~ 147 (250)
..|..|+.++..|+.+...+..++..++-.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888988988888888888766543
No 16
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=28.46 E-value=65 Score=28.39 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhh
Q 042813 119 TILALQQQVASLQAELTMVQNQLLNSRFVMANA 151 (250)
Q Consensus 119 iI~~LQ~QI~~lqaELa~vq~qLa~~r~~~a~~ 151 (250)
-...|++.+.+.++|++..+++|+.+|.+.|.+
T Consensus 179 kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~ 211 (228)
T 3q0x_A 179 TCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQL 211 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888999999999999999888877654
No 17
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=28.28 E-value=80 Score=21.71 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 042813 118 STILALQQQVASLQAELTMVQNQLLNSR 145 (250)
Q Consensus 118 GiI~~LQ~QI~~lqaELa~vq~qLa~~r 145 (250)
..|..|+.++..|+.|...++.++...+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888889999888888886543
No 18
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=27.60 E-value=67 Score=22.19 Aligned_cols=20 Identities=10% Similarity=0.278 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042813 122 ALQQQVASLQAELTMVQNQL 141 (250)
Q Consensus 122 ~LQ~QI~~lqaELa~vq~qL 141 (250)
.|+.++..|+.+++.++.+|
T Consensus 30 eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 30 EMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 19
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=27.52 E-value=84 Score=23.39 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 042813 118 STILALQQQVASLQAELTMVQNQLLNSR 145 (250)
Q Consensus 118 GiI~~LQ~QI~~lqaELa~vq~qLa~~r 145 (250)
..|..|+.+|.....++..++.+|-.+|
T Consensus 40 ~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 40 ALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4578888888888888888888886554
No 20
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=27.25 E-value=61 Score=20.12 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 042813 120 ILALQQQVASLQAELTMVQNQLL 142 (250)
Q Consensus 120 I~~LQ~QI~~lqaELa~vq~qLa 142 (250)
|..|+++...++.|++.+.-+++
T Consensus 2 irrlkqknarlkqeiaaleyeia 24 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIA 24 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHH
Confidence 55688888888888888877775
No 21
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=25.07 E-value=30 Score=26.61 Aligned_cols=24 Identities=21% Similarity=0.484 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 042813 119 TILALQQQVASLQAELTMVQNQLL 142 (250)
Q Consensus 119 iI~~LQ~QI~~lqaELa~vq~qLa 142 (250)
.|..||.+|..|+++++.++++|.
T Consensus 59 SViRLQKKImdLE~~~~~l~~el~ 82 (88)
T 1uuj_A 59 SVIRLQKKVMELESKLNEAKEEFT 82 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999999999999885
No 22
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=24.07 E-value=2.2e+02 Score=22.26 Aligned_cols=47 Identities=11% Similarity=0.025 Sum_probs=33.8
Q ss_pred HHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 042813 99 VTISYEAQARLSDPVYGCVSTILALQQQVASLQAELTMVQNQLLNSR 145 (250)
Q Consensus 99 ~SLvYEA~aR~rDPVyGCvGiI~~LQ~QI~~lqaELa~vq~qLa~~r 145 (250)
..++.+......-|..--...|..|+.++..++.||+.++.+++...
T Consensus 13 ~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 13 ERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp HHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555545457778888899999999999999988887653
No 23
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=22.02 E-value=77 Score=23.87 Aligned_cols=20 Identities=10% Similarity=0.461 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042813 120 ILALQQQVASLQAELTMVQN 139 (250)
Q Consensus 120 I~~LQ~QI~~lqaELa~vq~ 139 (250)
|..|+.+|..|+.+|..++.
T Consensus 6 l~~l~~~~~~l~~~l~~l~~ 25 (149)
T 1rtm_1 6 LANMEAEINTLKSKLELTNK 25 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44455555555555555444
No 24
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=21.81 E-value=1.1e+02 Score=23.70 Aligned_cols=32 Identities=19% Similarity=0.105 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhh
Q 042813 117 VSTILALQQQVASLQAELTMVQNQLLNSRFVM 148 (250)
Q Consensus 117 vGiI~~LQ~QI~~lqaELa~vq~qLa~~r~~~ 148 (250)
.+.|..|++||..+..+-+.+..+|.+.+.+.
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~ 50 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDI 50 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688999999999888888888877766553
No 25
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=20.72 E-value=79 Score=22.51 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhh
Q 042813 127 VASLQAELTMVQNQLLNSRFVMAN 150 (250)
Q Consensus 127 I~~lqaELa~vq~qLa~~r~~~a~ 150 (250)
.+.|..+|..++.+|.+.|++.++
T Consensus 11 ~~EL~~~l~elk~ELf~LR~q~at 34 (66)
T 1r73_A 11 DEELKNLLEEKKRQLMELRFQLAM 34 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 356788888888888888888876
No 26
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=20.69 E-value=1.3e+02 Score=19.56 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 042813 119 TILALQQQVASLQAELTMVQNQLL 142 (250)
Q Consensus 119 iI~~LQ~QI~~lqaELa~vq~qLa 142 (250)
.+...|+.|+.++.+.+.+..|+-
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHhhHHHHHHHHHHHHHHHH
Confidence 466788899999999888888863
No 27
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=20.01 E-value=63 Score=30.47 Aligned_cols=69 Identities=9% Similarity=0.106 Sum_probs=47.9
Q ss_pred hHHHHHHHHhhchhhHHHHHh---cCCcccHHHHHHHHHHHHh----hcccCCCCchHHH------------------HH
Q 042813 67 AARFAAVHKVFGASNVSKLLL---HIPVNRRQDAVVTISYEAQ----ARLSDPVYGCVST------------------IL 121 (250)
Q Consensus 67 ~~rF~~vHkVFG~SNV~KmLq---~lpp~~R~dA~~SLvYEA~----aR~rDPVyGCvGi------------------I~ 121 (250)
.+.+..++|.|...+-.=+++ .+.+.++.+-..-+|++.+ +++.-|+.||+-+ +-
T Consensus 143 ~e~~~~l~~~~~~~w~~i~~qa~~q~~~~k~r~k~~r~v~~~qe~a~w~vhrp~pg~~~~~e~~~~~~~~~~~~~~~~~~ 222 (424)
T 2pbi_A 143 KENYDFLNKKINYKWDFVIMQAKEQYRTGKERNKADRYALDCQEKAYWLVHRSPPGMNNVLDYGLDRVTNPNEVKKQTVT 222 (424)
T ss_dssp HHHHHHHHHHTGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHSCCTTSCCTTCCCSCBSSCTTCCCCCCHH
T ss_pred HHHHhhhhhhhcCchHHHHHHHHHHHhhhhccchhhhhhhhhhhhhhhhhhCCCCCCccccccccccccCccccccccHH
Confidence 367888888887777666665 3445566667777777766 7889999998743 34
Q ss_pred HHHHHHHHHHHHHH
Q 042813 122 ALQQQVASLQAELT 135 (250)
Q Consensus 122 ~LQ~QI~~lqaELa 135 (250)
.++.+|++|+.||.
T Consensus 223 ~~r~~veqLk~~l~ 236 (424)
T 2pbi_A 223 AVRKEIMYYQQALM 236 (424)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 56666666666653
Done!