Query 042813
Match_columns 250
No_of_seqs 126 out of 305
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 17:04:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042813.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042813hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hcia4 a.7.1.1 (A:633-746) al 58.9 9.8 0.00071 26.3 5.7 58 95-152 14-71 (114)
2 d1uklc_ a.38.1.1 (C:) SREBP-2 48.2 11 0.00083 24.4 4.2 27 116-142 31-57 (61)
3 d1nkpa_ a.38.1.1 (A:) Myc prot 42.5 41 0.003 22.7 6.7 30 116-145 50-79 (88)
4 d1am9a_ a.38.1.1 (A:) SREBP-1a 27.1 43 0.0031 22.4 4.5 29 115-143 47-75 (80)
5 d1pyia1 g.38.1.1 (A:30-71) PPR 20.4 28 0.002 21.1 2.2 17 38-54 2-18 (42)
6 d1urfa_ a.2.6.1 (A:) Protein k 20.4 1.1E+02 0.008 21.0 5.8 48 77-140 25-72 (81)
7 d3coqa1 g.38.1.1 (A:8-48) Gal4 19.7 26 0.0019 21.0 1.9 15 39-53 2-16 (41)
8 d1nlwa_ a.38.1.1 (A:) Mad prot 17.2 90 0.0066 20.4 4.5 29 117-145 46-74 (79)
9 d1quua1 a.7.1.1 (A:1-124) alph 16.7 1.4E+02 0.01 19.7 5.9 46 108-153 38-83 (124)
10 d1zmec1 g.38.1.1 (C:31-66) PUT 16.6 35 0.0026 20.2 2.0 15 39-53 2-16 (36)
No 1
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.89 E-value=9.8 Score=26.25 Aligned_cols=58 Identities=5% Similarity=-0.044 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhc
Q 042813 95 QDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELTMVQNQLLNSRFVMANAL 152 (250)
Q Consensus 95 ~dA~~SLvYEA~aR~rDPVyGCvGiI~~LQ~QI~~lqaELa~vq~qLa~~r~~~a~~~ 152 (250)
.+-+.+-+-|+..-+.+|+||-.+.|..+..+...++.||...+..+..+.-.....+
T Consensus 14 a~~~~~Wi~e~~~~l~~~~~~~~~~ve~~l~~h~~~e~el~~~~~~i~~l~~~g~~L~ 71 (114)
T d1hcia4 14 ANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQ 71 (114)
T ss_dssp HHHHHHHHHHHHHHHHSCSCTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666778888888999999999999999999999999999999876654444433
No 2
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.24 E-value=11 Score=24.44 Aligned_cols=27 Identities=22% Similarity=0.117 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042813 116 CVSTILALQQQVASLQAELTMVQNQLL 142 (250)
Q Consensus 116 CvGiI~~LQ~QI~~lqaELa~vq~qLa 142 (250)
++-.|..|+.++..++.|+..++..+.
T Consensus 31 Ai~YI~~Lq~~~~~L~~e~~~L~~~~~ 57 (61)
T d1uklc_ 31 AIDYIKYLQQVNHKLRQENMVLKLANQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999999999999988775
No 3
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.48 E-value=41 Score=22.71 Aligned_cols=30 Identities=17% Similarity=0.241 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 042813 116 CVSTILALQQQVASLQAELTMVQNQLLNSR 145 (250)
Q Consensus 116 CvGiI~~LQ~QI~~lqaELa~vq~qLa~~r 145 (250)
.+-.|..|+.++..+..++..++.+....+
T Consensus 50 A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~ 79 (88)
T d1nkpa_ 50 ATAYILSVQAEEQKLISEEDLLRKRREQLK 79 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355688888888888888887777665433
No 4
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.06 E-value=43 Score=22.37 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=23.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042813 115 GCVSTILALQQQVASLQAELTMVQNQLLN 143 (250)
Q Consensus 115 GCvGiI~~LQ~QI~~lqaELa~vq~qLa~ 143 (250)
..+-.|..|+.++..|..|+..++..+..
T Consensus 47 ~a~~yI~~L~~~~~~L~~e~~~lk~~~~~ 75 (80)
T d1am9a_ 47 KAIDYIRFLQHSNQKLKQENLSLRTAVHK 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667889999999999999988877753
No 5
>d1pyia1 g.38.1.1 (A:30-71) PPR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.39 E-value=28 Score=21.08 Aligned_cols=17 Identities=24% Similarity=0.700 Sum_probs=13.5
Q ss_pred CCCChhhHHhhhCCCCC
Q 042813 38 AAPCGACKFLRRKCVSG 54 (250)
Q Consensus 38 ~~~CAACK~lRRkC~~d 54 (250)
..+|..||..+.||...
T Consensus 2 r~aC~~Cr~rK~kCd~~ 18 (42)
T d1pyia1 2 RTACKRCRLKKIKCDQE 18 (42)
T ss_dssp CCCCHHHHHHTCCCCCC
T ss_pred cHHHHHHHHhCcCCCCc
Confidence 46889999999888754
No 6
>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.38 E-value=1.1e+02 Score=21.04 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=30.3
Q ss_pred hchhhHHHHHhcCCcccHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 042813 77 FGASNVSKLLLHIPVNRRQDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELTMVQNQ 140 (250)
Q Consensus 77 FG~SNV~KmLq~lpp~~R~dA~~SLvYEA~aR~rDPVyGCvGiI~~LQ~QI~~lqaELa~vq~q 140 (250)
=|+.||+++|..-...+|... -||+ +.+..-.++|+.|+.+|..++..
T Consensus 25 eGaEnm~k~~~~~~~~DrK~l-----~eaq-----------~~l~eS~~Ki~lLr~~L~~~~q~ 72 (81)
T d1urfa_ 25 QGAENMIQTYSNGSTKDRKLL-----LTAQ-----------QMLQDSKTKIDIIRMQLRRALQA 72 (81)
T ss_dssp HHHHHHHHHHHHSSSCCHHHH-----HHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCcccHHHH-----HHHH-----------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 499999999997655555432 2333 23344456677777777776654
No 7
>d3coqa1 g.38.1.1 (A:8-48) Gal4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.66 E-value=26 Score=20.98 Aligned_cols=15 Identities=27% Similarity=0.873 Sum_probs=12.4
Q ss_pred CCChhhHHhhhCCCC
Q 042813 39 APCGACKFLRRKCVS 53 (250)
Q Consensus 39 ~~CAACK~lRRkC~~ 53 (250)
.+|..||..+.||..
T Consensus 2 ~AC~~Cr~rK~KCd~ 16 (41)
T d3coqa1 2 QACDICRLKKLKCSK 16 (41)
T ss_dssp CCCHHHHHHTCCCCC
T ss_pred cchHHHHHhCcccCC
Confidence 578899999988864
No 8
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.25 E-value=90 Score=20.38 Aligned_cols=29 Identities=10% Similarity=0.063 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 042813 117 VSTILALQQQVASLQAELTMVQNQLLNSR 145 (250)
Q Consensus 117 vGiI~~LQ~QI~~lqaELa~vq~qLa~~r 145 (250)
+-.|..|+.++..+..++..++.+...++
T Consensus 46 ~~yI~~L~~~~~~l~~~~~~L~~~~~~L~ 74 (79)
T d1nlwa_ 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLK 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888888888877665443
No 9
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.65 E-value=1.4e+02 Score=19.75 Aligned_cols=46 Identities=11% Similarity=0.126 Sum_probs=37.0
Q ss_pred cccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhcc
Q 042813 108 RLSDPVYGCVSTILALQQQVASLQAELTMVQNQLLNSRFVMANALQ 153 (250)
Q Consensus 108 R~rDPVyGCvGiI~~LQ~QI~~lqaELa~vq~qLa~~r~~~a~~~q 153 (250)
...+|+...+-.|-.++.+...+..++...+..+....-.....+.
T Consensus 38 ~~~~~~~~d~~~v~~l~~~h~~~~~~i~~~~~~v~~l~~~~~~L~~ 83 (124)
T d1quua1 38 LQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNE 83 (124)
T ss_dssp HCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3467888899999999999999999999999888766555444443
No 10
>d1zmec1 g.38.1.1 (C:31-66) PUT3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=16.60 E-value=35 Score=20.19 Aligned_cols=15 Identities=27% Similarity=0.640 Sum_probs=10.7
Q ss_pred CCChhhHHhhhCCCC
Q 042813 39 APCGACKFLRRKCVS 53 (250)
Q Consensus 39 ~~CAACK~lRRkC~~ 53 (250)
.+|-.||..+.||..
T Consensus 2 ~aC~~Cr~rK~kCd~ 16 (36)
T d1zmec1 2 VACLSCRKRHIKCPG 16 (36)
T ss_dssp CCCHHHHHHTCCCCC
T ss_pred ccHHHHHHhCCcCCC
Confidence 467777777777754
Done!