Query 042815
Match_columns 87
No_of_seqs 133 out of 1515
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 17:05:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042815.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042815hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3spa_A Mtrpol, DNA-directed RN 99.9 2.6E-22 8.9E-27 139.1 7.3 80 4-86 162-244 (1134)
2 4g26_A Pentatricopeptide repea 99.9 4.8E-22 1.6E-26 130.4 7.4 80 4-86 102-183 (501)
3 4g26_A Pentatricopeptide repea 99.8 1.2E-20 4.1E-25 123.8 7.6 80 4-86 137-218 (501)
4 3spa_A Mtrpol, DNA-directed RN 99.8 3.4E-20 1.2E-24 128.7 5.8 76 8-86 128-208 (1134)
5 2xpi_A Anaphase-promoting comp 98.6 5.2E-08 1.8E-12 63.6 5.0 77 2-85 79-157 (597)
6 2xpi_A Anaphase-promoting comp 98.4 1.3E-06 4.4E-11 57.0 6.6 63 6-68 474-544 (597)
7 1na0_A Designed protein CTPR3; 97.3 0.0014 4.9E-08 33.6 6.2 60 7-67 9-70 (125)
8 2fo7_A Synthetic consensus TPR 97.2 0.0026 9E-08 32.8 6.7 62 6-68 34-97 (136)
9 1w3b_A UDP-N-acetylglucosamine 97.1 0.0027 9.2E-08 39.4 7.1 26 9-34 273-298 (388)
10 1w3b_A UDP-N-acetylglucosamine 97.1 0.0024 8.3E-08 39.6 6.6 62 6-69 236-300 (388)
11 1na0_A Designed protein CTPR3; 97.0 0.0057 1.9E-07 31.2 7.1 64 5-69 41-106 (125)
12 2fo7_A Synthetic consensus TPR 97.0 0.0072 2.5E-07 31.1 7.4 63 5-68 67-131 (136)
13 1b89_A Protein (clathrin heavy 96.9 0.00014 4.8E-09 47.6 0.0 56 8-69 33-89 (449)
14 2y4t_A DNAJ homolog subfamily 96.8 0.0032 1.1E-07 39.6 5.9 62 6-68 25-88 (450)
15 2y4t_A DNAJ homolog subfamily 96.8 0.007 2.4E-07 38.0 7.0 64 5-69 58-123 (450)
16 3vtx_A MAMA; tetratricopeptide 96.6 0.021 7.3E-07 31.6 7.7 72 5-82 105-178 (184)
17 3k9i_A BH0479 protein; putativ 96.6 0.012 4.1E-07 30.6 6.1 63 6-69 26-90 (117)
18 2vq2_A PILW, putative fimbrial 96.5 0.011 3.7E-07 33.4 6.0 60 7-67 42-104 (225)
19 3ma5_A Tetratricopeptide repea 96.5 0.024 8.2E-07 28.8 6.7 62 5-67 5-68 (100)
20 2ho1_A Type 4 fimbrial biogene 96.4 0.012 4.1E-07 34.1 5.8 20 13-32 77-96 (252)
21 2lni_A Stress-induced-phosphop 96.4 0.035 1.2E-06 28.6 7.5 62 5-67 14-77 (133)
22 4eqf_A PEX5-related protein; a 96.3 0.014 4.9E-07 35.7 6.1 62 6-68 212-275 (365)
23 2kck_A TPR repeat; tetratricop 96.3 0.015 5.2E-07 29.0 5.3 52 8-60 41-95 (112)
24 3as5_A MAMA; tetratricopeptide 96.3 0.029 9.8E-07 30.5 6.8 59 7-66 76-136 (186)
25 2vq2_A PILW, putative fimbrial 96.3 0.024 8.1E-07 31.9 6.6 62 6-67 75-140 (225)
26 1na3_A Designed protein CTPR2; 96.3 0.031 1.1E-06 27.0 6.4 63 6-69 8-72 (91)
27 3as5_A MAMA; tetratricopeptide 96.3 0.029 9.9E-07 30.5 6.7 64 5-69 40-105 (186)
28 2kat_A Uncharacterized protein 96.2 0.043 1.5E-06 28.2 7.2 63 5-68 17-81 (115)
29 2gw1_A Mitochondrial precursor 96.2 0.014 4.9E-07 37.0 5.7 64 5-69 37-102 (514)
30 3mkr_A Coatomer subunit epsilo 96.2 0.017 5.9E-07 35.1 5.8 35 6-40 64-98 (291)
31 2gw1_A Mitochondrial precursor 96.1 0.024 8.1E-07 36.0 6.6 62 6-69 5-68 (514)
32 4eqf_A PEX5-related protein; a 96.1 0.033 1.1E-06 34.1 7.1 61 6-67 98-160 (365)
33 2l6j_A TPR repeat-containing p 96.1 0.045 1.5E-06 27.5 6.7 63 5-68 2-66 (111)
34 2lni_A Stress-induced-phosphop 96.1 0.053 1.8E-06 27.9 7.1 64 5-69 48-113 (133)
35 2ho1_A Type 4 fimbrial biogene 96.0 0.041 1.4E-06 31.8 6.8 52 8-60 142-193 (252)
36 2q7f_A YRRB protein; TPR, prot 96.0 0.047 1.6E-06 31.2 6.9 52 8-60 160-211 (243)
37 2q7f_A YRRB protein; TPR, prot 96.0 0.049 1.7E-06 31.1 7.0 61 6-67 56-118 (243)
38 1xnf_A Lipoprotein NLPI; TPR, 96.0 0.028 9.6E-07 32.8 6.0 60 7-67 43-104 (275)
39 1fch_A Peroxisomal targeting s 96.0 0.032 1.1E-06 34.0 6.4 62 6-68 216-279 (368)
40 3q49_B STIP1 homology and U bo 95.9 0.067 2.3E-06 27.9 7.1 55 5-60 7-61 (137)
41 1xnf_A Lipoprotein NLPI; TPR, 95.9 0.05 1.7E-06 31.7 6.9 63 5-68 75-139 (275)
42 2kck_A TPR repeat; tetratricop 95.9 0.059 2E-06 26.7 7.8 64 5-69 4-69 (112)
43 3cv0_A Peroxisome targeting si 95.8 0.043 1.5E-06 32.7 6.5 62 6-68 171-234 (327)
44 1elw_A TPR1-domain of HOP; HOP 95.8 0.061 2.1E-06 26.9 6.4 61 6-67 37-99 (118)
45 2pl2_A Hypothetical conserved 95.8 0.04 1.4E-06 31.8 6.1 62 6-69 117-180 (217)
46 4gco_A Protein STI-1; structur 95.8 0.082 2.8E-06 28.0 7.1 61 6-67 46-108 (126)
47 2dba_A Smooth muscle cell asso 95.8 0.083 2.8E-06 27.7 7.3 61 5-67 26-92 (148)
48 1fch_A Peroxisomal targeting s 95.8 0.07 2.4E-06 32.5 7.4 61 6-67 97-159 (368)
49 3cv0_A Peroxisome targeting si 95.8 0.048 1.6E-06 32.4 6.5 64 5-69 204-269 (327)
50 3mkr_A Coatomer subunit epsilo 95.7 0.057 2E-06 32.8 6.8 52 6-58 199-250 (291)
51 1b89_A Protein (clathrin heavy 95.7 0.023 7.9E-07 37.3 5.2 46 9-60 150-195 (449)
52 3gyz_A Chaperone protein IPGC; 95.7 0.056 1.9E-06 29.9 6.2 51 9-60 38-88 (151)
53 3uq3_A Heat shock protein STI1 95.7 0.051 1.7E-06 31.2 6.3 61 6-68 4-66 (258)
54 2xcb_A PCRH, regulatory protei 95.7 0.096 3.3E-06 28.0 7.1 61 6-67 51-113 (142)
55 3gyz_A Chaperone protein IPGC; 95.7 0.076 2.6E-06 29.4 6.7 63 5-69 68-133 (151)
56 2vgx_A Chaperone SYCD; alterna 95.6 0.064 2.2E-06 29.2 6.3 61 6-67 54-116 (148)
57 2ond_A Cleavage stimulation fa 95.6 0.055 1.9E-06 32.8 6.4 63 4-68 96-162 (308)
58 2vgx_A Chaperone SYCD; alterna 95.6 0.1 3.5E-06 28.4 7.0 64 5-69 19-84 (148)
59 1elr_A TPR2A-domain of HOP; HO 95.6 0.025 8.7E-07 29.0 4.3 63 6-68 37-107 (131)
60 2vyi_A SGTA protein; chaperone 95.5 0.096 3.3E-06 26.6 7.1 61 6-67 45-107 (131)
61 3sz7_A HSC70 cochaperone (SGT) 95.5 0.12 4.2E-06 28.1 7.1 53 7-60 45-97 (164)
62 2ooe_A Cleavage stimulation fa 95.4 0.079 2.7E-06 34.5 7.0 71 5-83 11-84 (530)
63 3uq3_A Heat shock protein STI1 95.4 0.11 3.9E-06 29.7 7.1 54 6-60 172-225 (258)
64 3upv_A Heat shock protein STI1 95.4 0.11 3.8E-06 26.9 7.1 61 6-67 37-99 (126)
65 3vtx_A MAMA; tetratricopeptide 95.4 0.094 3.2E-06 28.9 6.6 61 6-68 4-67 (184)
66 1elr_A TPR2A-domain of HOP; HO 95.4 0.11 3.7E-06 26.5 6.4 62 7-69 4-67 (131)
67 2xcb_A PCRH, regulatory protei 95.4 0.094 3.2E-06 28.0 6.3 63 6-69 17-81 (142)
68 3hym_B Cell division cycle pro 95.4 0.067 2.3E-06 31.8 6.2 60 7-67 125-186 (330)
69 3sz7_A HSC70 cochaperone (SGT) 95.3 0.11 3.7E-06 28.3 6.5 64 5-69 9-74 (164)
70 3hym_B Cell division cycle pro 95.3 0.083 2.8E-06 31.4 6.4 64 5-69 234-299 (330)
71 1hh8_A P67PHOX, NCF-2, neutrop 95.2 0.15 5.2E-06 28.6 7.2 64 4-68 34-99 (213)
72 1elw_A TPR1-domain of HOP; HOP 95.2 0.12 3.9E-06 25.8 6.5 63 6-69 3-67 (118)
73 2vyi_A SGTA protein; chaperone 95.1 0.14 4.8E-06 26.0 6.7 64 5-69 10-75 (131)
74 2r5s_A Uncharacterized protein 95.1 0.097 3.3E-06 29.0 5.9 60 6-65 107-169 (176)
75 4i17_A Hypothetical protein; T 95.0 0.17 5.9E-06 28.9 7.0 53 8-60 8-60 (228)
76 3q49_B STIP1 homology and U bo 94.9 0.17 5.8E-06 26.3 7.1 63 5-68 41-105 (137)
77 1a17_A Serine/threonine protei 94.9 0.19 6.4E-06 26.8 7.1 62 6-68 46-109 (166)
78 1hxi_A PEX5, peroxisome target 94.9 0.19 6.3E-06 26.3 6.8 53 6-60 50-103 (121)
79 4ga2_A E3 SUMO-protein ligase 94.8 0.13 4.3E-06 28.0 5.8 52 6-59 64-116 (150)
80 2dba_A Smooth muscle cell asso 94.7 0.21 7.1E-06 26.1 6.7 62 7-69 65-128 (148)
81 2ond_A Cleavage stimulation fa 94.6 0.21 7E-06 30.2 6.8 63 6-68 202-269 (308)
82 3nf1_A KLC 1, kinesin light ch 94.6 0.083 2.8E-06 31.2 5.0 63 6-68 26-97 (311)
83 2pl2_A Hypothetical conserved 94.5 0.2 6.7E-06 28.8 6.4 63 5-69 3-68 (217)
84 3upv_A Heat shock protein STI1 94.5 0.23 7.7E-06 25.6 6.7 62 6-68 3-66 (126)
85 4abn_A Tetratricopeptide repea 94.3 0.2 6.8E-06 32.5 6.6 61 6-68 136-207 (474)
86 3ieg_A DNAJ homolog subfamily 94.2 0.22 7.5E-06 29.8 6.4 62 6-68 36-99 (359)
87 4i17_A Hypothetical protein; T 94.2 0.34 1.2E-05 27.6 7.0 62 5-68 40-104 (228)
88 3qww_A SET and MYND domain-con 94.2 0.17 5.9E-06 32.9 6.1 53 8-60 341-400 (433)
89 1hh8_A P67PHOX, NCF-2, neutrop 94.1 0.1 3.5E-06 29.4 4.5 61 5-69 4-66 (213)
90 3edt_B KLC 2, kinesin light ch 94.0 0.17 5.9E-06 29.2 5.5 62 6-67 42-112 (283)
91 3u4t_A TPR repeat-containing p 93.9 0.27 9.3E-06 28.5 6.2 60 8-67 38-101 (272)
92 3fp2_A TPR repeat-containing p 93.8 0.22 7.4E-06 31.9 6.1 60 7-67 310-371 (537)
93 3rkv_A Putative peptidylprolyl 93.8 0.35 1.2E-05 26.2 6.2 62 6-68 62-125 (162)
94 2xev_A YBGF; tetratricopeptide 93.8 0.33 1.1E-05 24.9 6.8 60 8-69 40-105 (129)
95 3ieg_A DNAJ homolog subfamily 93.7 0.41 1.4E-05 28.6 6.9 63 5-68 152-216 (359)
96 3nf1_A KLC 1, kinesin light ch 93.7 0.21 7.3E-06 29.4 5.5 63 6-68 152-223 (311)
97 4gcn_A Protein STI-1; structur 93.7 0.38 1.3E-05 25.3 6.8 58 8-67 9-69 (127)
98 4ga2_A E3 SUMO-protein ligase 93.5 0.26 8.9E-06 26.7 5.3 61 6-68 30-93 (150)
99 3edt_B KLC 2, kinesin light ch 93.4 0.25 8.6E-06 28.5 5.5 62 6-67 84-154 (283)
100 4gco_A Protein STI-1; structur 93.3 0.45 1.5E-05 25.0 6.6 60 8-68 14-75 (126)
101 3fp2_A TPR repeat-containing p 93.2 0.37 1.3E-05 30.8 6.4 59 5-64 57-117 (537)
102 3qwp_A SET and MYND domain-con 93.2 0.27 9.4E-06 31.8 5.8 54 7-60 329-389 (429)
103 1v54_E Cytochrome C oxidase po 93.2 0.15 5.2E-06 27.1 3.7 59 23-85 26-86 (109)
104 3n71_A Histone lysine methyltr 93.1 0.34 1.2E-05 32.0 6.2 54 7-60 351-411 (490)
105 4gcn_A Protein STI-1; structur 93.1 0.37 1.3E-05 25.3 5.4 64 5-68 40-111 (127)
106 3urz_A Uncharacterized protein 93.0 0.55 1.9E-05 26.7 6.4 54 13-68 60-116 (208)
107 1qqe_A Vesicular transport pro 92.8 0.68 2.3E-05 27.8 6.8 60 8-67 159-226 (292)
108 3u4t_A TPR repeat-containing p 92.8 0.56 1.9E-05 27.1 6.3 60 8-68 75-136 (272)
109 2ooe_A Cleavage stimulation fa 92.7 0.92 3.1E-05 29.5 7.8 63 5-69 319-385 (530)
110 2e2e_A Formate-dependent nitri 92.7 0.66 2.2E-05 25.3 6.3 30 6-35 43-72 (177)
111 1hxi_A PEX5, peroxisome target 92.4 0.57 2E-05 24.4 5.6 58 9-68 19-79 (121)
112 1p5q_A FKBP52, FK506-binding p 92.4 0.76 2.6E-05 28.4 6.8 51 9-60 198-248 (336)
113 2kc7_A BFR218_protein; tetratr 92.3 0.47 1.6E-05 23.2 5.0 52 15-68 8-63 (99)
114 2fbn_A 70 kDa peptidylprolyl i 92.2 0.85 2.9E-05 25.4 6.5 60 8-68 89-150 (198)
115 2if4_A ATFKBP42; FKBP-like, al 92.1 0.97 3.3E-05 27.9 7.1 59 9-68 232-292 (338)
116 3ly7_A Transcriptional activat 92.0 0.98 3.4E-05 29.1 7.0 62 5-68 275-338 (372)
117 1p5q_A FKBP52, FK506-binding p 92.0 0.92 3.1E-05 28.0 6.8 63 5-69 228-294 (336)
118 1a17_A Serine/threonine protei 92.0 0.76 2.6E-05 24.3 6.8 62 7-69 13-76 (166)
119 1wao_1 Serine/threonine protei 91.9 0.92 3.2E-05 29.5 7.0 63 5-68 38-102 (477)
120 2vsy_A XCC0866; transferase, g 91.9 1.1 3.9E-05 29.3 7.5 52 8-60 58-109 (568)
121 4abn_A Tetratricopeptide repea 91.8 0.62 2.1E-05 30.2 6.1 63 5-69 100-166 (474)
122 2c2l_A CHIP, carboxy terminus 91.8 1 3.6E-05 26.9 6.8 59 6-66 37-98 (281)
123 2c2l_A CHIP, carboxy terminus 91.5 1.4 4.8E-05 26.4 7.1 61 6-68 3-66 (281)
124 2ff4_A Probable regulatory pro 91.2 1.5 5.3E-05 27.9 7.3 70 10-80 174-247 (388)
125 3mv2_B Coatomer subunit epsilo 91.1 1.1 3.7E-05 28.1 6.4 65 5-69 98-165 (310)
126 4gyw_A UDP-N-acetylglucosamine 90.9 1 3.5E-05 31.2 6.7 59 7-67 9-70 (723)
127 1ihg_A Cyclophilin 40; ppiase 90.6 1.3 4.4E-05 27.9 6.6 61 6-68 272-335 (370)
128 2xev_A YBGF; tetratricopeptide 90.6 0.96 3.3E-05 23.0 6.0 56 12-69 7-68 (129)
129 2y69_E Cytochrome C oxidase su 90.5 0.42 1.4E-05 26.7 3.7 56 26-85 72-129 (152)
130 2l6j_A TPR repeat-containing p 90.5 0.77 2.6E-05 22.6 4.7 36 5-42 36-71 (111)
131 3qou_A Protein YBBN; thioredox 90.4 1.3 4.5E-05 26.5 6.3 55 6-60 218-273 (287)
132 3qky_A Outer membrane assembly 90.3 1.7 5.6E-05 25.3 7.2 63 5-69 13-81 (261)
133 2e2e_A Formate-dependent nitri 90.0 1.4 4.8E-05 23.9 7.2 63 6-69 77-144 (177)
134 2vsy_A XCC0866; transferase, g 90.0 1.4 4.7E-05 29.0 6.5 63 5-69 21-86 (568)
135 3u3w_A Transcriptional activat 89.7 0.75 2.6E-05 27.5 4.8 59 8-66 156-222 (293)
136 2h6f_A Protein farnesyltransfe 89.5 1.1 3.8E-05 28.4 5.7 27 8-34 167-193 (382)
137 3mv2_B Coatomer subunit epsilo 89.4 1 3.6E-05 28.1 5.3 62 6-69 135-207 (310)
138 4gyw_A UDP-N-acetylglucosamine 88.9 2.1 7E-05 29.7 6.9 23 10-32 80-102 (723)
139 2yhc_A BAMD, UPF0169 lipoprote 88.8 2.1 7.3E-05 24.4 6.7 63 7-69 4-70 (225)
140 1na3_A Designed protein CTPR2; 88.8 1.1 3.8E-05 21.1 5.9 32 5-36 41-72 (91)
141 2ff4_A Probable regulatory pro 88.7 0.96 3.3E-05 28.9 4.9 41 6-46 204-249 (388)
142 4e6h_A MRNA 3'-END-processing 88.3 4 0.00014 28.2 8.0 77 5-84 64-145 (679)
143 1kt0_A FKBP51, 51 kDa FK506-bi 88.3 2.6 8.8E-05 27.2 6.8 60 7-67 317-378 (457)
144 3gw4_A Uncharacterized protein 87.7 1.4 4.9E-05 24.1 4.8 63 5-67 24-93 (203)
145 3ulq_A Response regulator aspa 87.6 2.1 7.2E-05 26.3 5.9 60 8-67 225-291 (383)
146 3ro2_A PINS homolog, G-protein 87.5 2.3 8E-05 24.8 5.9 58 7-66 5-69 (338)
147 4g1t_A Interferon-induced prot 87.4 3.3 0.00011 26.0 6.8 60 7-66 51-120 (472)
148 2hr2_A Hypothetical protein; a 87.2 2.6 9.1E-05 23.7 6.8 61 7-67 57-129 (159)
149 3u3w_A Transcriptional activat 87.0 2.8 9.4E-05 24.9 6.0 58 10-67 118-182 (293)
150 3ro3_A PINS homolog, G-protein 86.9 1.1 3.9E-05 23.2 4.0 61 7-67 9-76 (164)
151 3sf4_A G-protein-signaling mod 86.9 3.7 0.00012 24.9 7.2 60 5-66 7-73 (406)
152 1kt0_A FKBP51, 51 kDa FK506-bi 86.8 2.8 9.5E-05 27.0 6.3 63 5-69 349-415 (457)
153 3u64_A Protein TP_0956; tetrat 86.7 4.2 0.00014 25.5 6.8 73 7-84 199-283 (301)
154 3k9i_A BH0479 protein; putativ 86.7 2 6.9E-05 21.7 5.0 47 6-52 60-107 (117)
155 2qfc_A PLCR protein; TPR, HTH, 86.5 3 0.0001 24.8 6.0 61 7-67 155-223 (293)
156 3ro3_A PINS homolog, G-protein 86.3 2.1 7.1E-05 22.1 4.8 60 8-67 50-116 (164)
157 2b7e_A PRE-mRNA processing pro 86.2 1.3 4.4E-05 20.9 3.4 34 23-56 2-36 (59)
158 1ouv_A Conserved hypothetical 86.2 3.4 0.00012 24.0 6.9 14 20-33 55-68 (273)
159 2ifu_A Gamma-SNAP; membrane fu 86.1 2.4 8.1E-05 25.6 5.5 61 7-67 155-222 (307)
160 2h6f_A Protein farnesyltransfe 86.1 3 0.0001 26.4 6.1 51 8-60 98-150 (382)
161 1ouv_A Conserved hypothetical 85.5 3.8 0.00013 23.8 6.9 57 8-67 75-141 (273)
162 3qou_A Protein YBBN; thioredox 85.1 4.4 0.00015 24.2 7.2 59 8-68 118-179 (287)
163 3gw4_A Uncharacterized protein 85.0 1.9 6.5E-05 23.6 4.4 62 6-67 65-134 (203)
164 3q15_A PSP28, response regulat 84.7 2.6 8.8E-05 26.0 5.2 60 8-67 223-288 (378)
165 3ma5_A Tetratricopeptide repea 84.7 2.2 7.5E-05 21.1 4.2 30 6-35 40-69 (100)
166 3sf4_A G-protein-signaling mod 83.8 2.1 7.3E-05 26.0 4.5 54 7-60 267-325 (406)
167 3ro2_A PINS homolog, G-protein 83.8 1.8 6.1E-05 25.4 4.1 25 9-33 265-289 (338)
168 4f3v_A ESX-1 secretion system 83.7 5.4 0.00018 24.6 6.2 61 9-69 173-237 (282)
169 2pzi_A Probable serine/threoni 83.3 3.5 0.00012 28.1 5.7 62 6-68 432-495 (681)
170 4a1s_A PINS, partner of inscut 82.6 5.4 0.00018 24.5 6.1 58 8-67 49-113 (411)
171 1ihg_A Cyclophilin 40; ppiase 81.6 4 0.00014 25.6 5.2 54 5-60 305-359 (370)
172 2fbn_A 70 kDa peptidylprolyl i 81.1 5.2 0.00018 22.1 7.1 62 7-68 38-116 (198)
173 2kat_A Uncharacterized protein 80.6 3.8 0.00013 20.5 4.2 32 5-36 51-82 (115)
174 4a1s_A PINS, partner of inscut 80.3 2.4 8.1E-05 26.1 3.8 60 8-67 264-330 (411)
175 1qqe_A Vesicular transport pro 80.2 4.2 0.00014 24.3 4.8 63 7-69 117-187 (292)
176 2r5s_A Uncharacterized protein 79.9 2 6.7E-05 23.5 3.1 28 7-34 40-67 (176)
177 2qfc_A PLCR protein; TPR, HTH, 78.9 3.2 0.00011 24.7 4.0 53 8-60 197-254 (293)
178 3n71_A Histone lysine methyltr 78.5 4.9 0.00017 26.6 5.0 50 16-65 318-376 (490)
179 3qwp_A SET and MYND domain-con 78.3 4.1 0.00014 26.3 4.6 54 12-65 292-354 (429)
180 2ifu_A Gamma-SNAP; membrane fu 78.0 4.1 0.00014 24.5 4.3 59 8-67 117-182 (307)
181 1uzc_A Hypothetical protein FL 77.2 4.8 0.00017 19.6 4.5 37 22-58 13-49 (71)
182 1xi4_A Clathrin heavy chain; a 77.1 6.6 0.00023 30.1 5.7 25 8-32 1135-1159(1630)
183 1wao_1 Serine/threonine protei 76.9 5.8 0.0002 25.8 5.0 58 5-64 72-134 (477)
184 3cqc_A Nuclear pore complex pr 76.9 1.6 5.4E-05 26.8 2.2 27 9-35 36-62 (270)
185 4b4t_Q 26S proteasome regulato 76.8 8.8 0.0003 23.7 5.7 60 8-67 136-202 (434)
186 2p58_C Putative type III secre 75.8 1.6 5.4E-05 23.2 1.7 48 15-68 48-97 (116)
187 2o03_A Probable zinc uptake re 75.4 7.4 0.00025 20.8 4.9 49 12-60 15-63 (131)
188 3qky_A Outer membrane assembly 75.3 9.5 0.00032 22.0 6.4 63 7-69 52-126 (261)
189 3urz_A Uncharacterized protein 75.2 8.8 0.0003 21.5 7.0 50 5-56 86-136 (208)
190 1zu2_A Mitochondrial import re 74.5 6.6 0.00023 22.1 4.2 72 6-84 35-130 (158)
191 3mwm_A ZUR, putative metal upt 74.4 6.7 0.00023 21.3 4.2 49 12-60 18-66 (139)
192 1pc2_A Mitochondria fission pr 74.2 3.3 0.00011 23.2 2.9 31 9-41 73-103 (152)
193 1v54_E Cytochrome C oxidase po 74.0 8 0.00027 20.5 5.0 47 5-52 43-89 (109)
194 1ixm_A SPO0B, protein (sporula 73.6 3.9 0.00013 23.7 3.3 24 12-35 37-60 (192)
195 1oai_A Nuclear RNA export fact 73.6 4.4 0.00015 19.0 2.9 24 20-43 33-57 (59)
196 3l6a_A Eukaryotic translation 73.1 13 0.00046 23.7 5.8 57 9-69 14-77 (364)
197 2nsz_A Programmed cell death p 72.6 9.1 0.00031 20.6 5.0 60 9-69 9-72 (129)
198 2if4_A ATFKBP42; FKBP-like, al 72.1 10 0.00035 23.3 5.1 60 7-68 179-258 (338)
199 2dod_A Transcription elongatio 72.0 7.7 0.00026 19.4 4.2 46 23-68 16-68 (82)
200 1wy6_A Hypothetical protein ST 71.4 12 0.0004 21.3 5.8 62 10-75 94-157 (172)
201 2fe3_A Peroxide operon regulat 71.3 10 0.00034 20.7 4.5 49 12-60 26-74 (145)
202 1nzn_A CGI-135 protein, fissio 71.2 4.6 0.00016 21.9 3.0 25 12-36 79-103 (126)
203 3ulq_A Response regulator aspa 71.0 9.9 0.00034 23.3 4.9 62 7-68 184-252 (383)
204 1mzb_A Ferric uptake regulatio 70.9 8.7 0.0003 20.6 4.1 49 12-60 22-71 (136)
205 2xig_A Ferric uptake regulatio 70.5 10 0.00036 20.8 4.4 49 12-60 31-79 (150)
206 4g1t_A Interferon-induced prot 70.3 1.1 3.8E-05 28.2 0.4 28 7-34 430-457 (472)
207 3q15_A PSP28, response regulat 69.9 8.4 0.00029 23.7 4.4 62 7-68 182-250 (378)
208 2v5f_A Prolyl 4-hydroxylase su 68.7 9.3 0.00032 19.1 6.7 61 7-67 5-73 (104)
209 3rkv_A Putative peptidylprolyl 68.1 11 0.00039 19.9 6.0 44 5-50 95-139 (162)
210 1zu2_A Mitochondrial import re 67.1 10 0.00035 21.3 3.9 52 6-59 79-141 (158)
211 2hr2_A Hypothetical protein; a 67.0 15 0.0005 20.7 5.5 59 9-67 13-84 (159)
212 2ion_A PDCD4, programmed cell 66.9 14 0.00048 20.5 5.1 45 9-54 11-55 (152)
213 2yhc_A BAMD, UPF0169 lipoprote 66.7 15 0.00052 20.7 7.2 29 8-36 42-70 (225)
214 2kc7_A BFR218_protein; tetratr 65.8 9.6 0.00033 18.1 6.8 32 6-37 33-65 (99)
215 4b4t_Q 26S proteasome regulato 65.3 16 0.00056 22.5 5.0 53 15-67 12-82 (434)
216 1xi4_A Clathrin heavy chain; a 64.9 19 0.00066 27.8 5.8 54 6-65 1104-1159(1630)
217 1wy6_A Hypothetical protein ST 64.3 15 0.00053 20.8 4.2 34 6-39 124-157 (172)
218 2w57_A Ferric uptake regulatio 62.9 12 0.00039 20.6 3.6 49 12-60 21-70 (150)
219 2y69_E Cytochrome C oxidase su 62.8 18 0.00062 20.3 5.0 46 5-51 86-131 (152)
220 2pzi_A Probable serine/threoni 61.7 14 0.00046 25.2 4.4 17 44-60 536-552 (681)
221 2fu4_A Ferric uptake regulatio 61.5 12 0.00042 17.9 3.5 46 13-58 22-68 (83)
222 3rjv_A Putative SEL1 repeat pr 61.0 20 0.00068 20.2 6.7 46 6-54 17-62 (212)
223 1wgl_A TOLL-interacting protei 60.9 8.5 0.00029 18.0 2.4 20 21-40 37-56 (59)
224 3qww_A SET and MYND domain-con 60.4 14 0.00048 24.0 4.1 27 8-34 383-409 (433)
225 3eyy_A Putative iron uptake re 60.0 14 0.00049 20.1 3.7 48 12-60 23-70 (145)
226 1hz4_A MALT regulatory protein 59.9 19 0.00066 21.8 4.6 59 9-67 95-162 (373)
227 3dra_A Protein farnesyltransfe 57.7 20 0.00067 22.1 4.3 31 5-35 256-286 (306)
228 3bee_A Putative YFRE protein; 57.5 16 0.00056 18.1 6.8 63 5-69 4-72 (93)
229 1uhw_A Pleckstrin; three-helix 57.3 9.9 0.00034 20.1 2.5 34 5-38 35-71 (109)
230 4ets_A Ferric uptake regulatio 56.2 18 0.00063 20.1 3.7 45 14-58 39-85 (162)
231 2jp7_A MRNA export factor MEX6 56.1 4.7 0.00016 18.8 1.0 23 20-43 32-54 (57)
232 4e6h_A MRNA 3'-END-processing 54.9 28 0.00097 24.1 5.1 60 9-69 436-499 (679)
233 2ko4_A Mediator of RNA polymer 54.4 19 0.00066 18.0 3.2 27 5-31 34-60 (81)
234 1hz4_A MALT regulatory protein 54.0 34 0.0012 20.7 6.6 60 8-67 136-201 (373)
235 2rg8_A Programmed cell death p 53.7 28 0.00094 19.6 4.5 26 9-34 12-37 (165)
236 4b4t_R RPN7, 26S proteasome re 52.4 18 0.00061 23.3 3.6 52 9-60 133-186 (429)
237 4gns_B Protein CSD3, chitin bi 51.9 12 0.0004 26.5 2.8 29 6-34 370-398 (754)
238 3eiq_C Programmed cell death p 50.6 29 0.00099 22.2 4.3 60 9-69 219-282 (358)
239 3ezx_A MMCP 1, monomethylamine 49.9 23 0.00077 20.7 3.5 44 17-60 12-55 (215)
240 3f3f_C Nucleoporin NUP85; stru 49.6 12 0.0004 25.6 2.5 48 10-59 519-566 (570)
241 1y8m_A FIS1; mitochondria, unk 49.6 27 0.00092 19.4 3.6 27 13-41 83-109 (144)
242 1fsh_A Dishevelled-1; three-he 48.2 28 0.00096 18.0 3.8 34 5-38 48-85 (105)
243 1v3f_A Pleckstrin 2; three-hel 47.1 26 0.00091 18.6 3.3 34 5-38 35-71 (120)
244 3bqo_A Telomeric repeat-bindin 47.0 23 0.00078 21.0 3.1 21 14-34 124-144 (211)
245 2zu6_B Programmed cell death p 46.9 27 0.00092 21.8 3.7 46 9-55 168-213 (307)
246 1ug3_A EIF4GI, eukaryotic prot 44.5 32 0.0011 21.5 3.8 60 9-69 13-75 (339)
247 2e2a_A Protein (enzyme IIA); h 43.5 17 0.00059 19.0 2.1 19 16-34 29-47 (105)
248 1wcr_A PTS system, N, N'-diace 43.3 17 0.0006 18.9 2.1 19 16-34 27-45 (103)
249 1dp3_A TRAM protein; helix-loo 42.1 14 0.00046 17.1 1.4 41 17-57 6-46 (55)
250 3a54_A Protein-glutaminase; mu 42.0 39 0.0013 20.9 3.7 37 5-41 120-175 (305)
251 4gns_B Protein CSD3, chitin bi 41.8 68 0.0023 22.7 5.3 49 16-66 346-397 (754)
252 3o48_A Mitochondria fission 1 41.6 32 0.0011 18.9 3.0 30 10-41 81-110 (134)
253 1zl8_A LIN-7; heterodimer, alp 41.3 13 0.00046 16.9 1.3 22 21-42 7-28 (53)
254 3bu8_A Telomeric repeat-bindin 40.7 32 0.0011 20.7 3.1 23 14-36 121-143 (235)
255 1x87_A Urocanase protein; stru 40.1 15 0.0005 24.9 1.8 33 12-44 219-257 (551)
256 1uwk_A Urocanate hydratase; hy 39.0 14 0.00049 25.0 1.6 33 12-44 224-262 (557)
257 3k1s_A PTS system, cellobiose- 38.9 22 0.00076 18.7 2.1 19 16-34 31-49 (109)
258 3q7a_A Farnesyltransferase alp 38.1 70 0.0024 20.3 4.6 30 5-34 300-329 (349)
259 2fkn_A Urocanate hydratase; ro 38.0 15 0.00051 24.9 1.6 22 23-44 237-258 (552)
260 2rpa_A Katanin P60 ATPase-cont 37.6 29 0.00098 17.1 2.3 24 12-35 17-40 (78)
261 2ve8_A FTSK, DNA translocase F 37.5 38 0.0013 16.5 3.7 28 11-39 27-54 (73)
262 2keb_A DNA polymerase subunit 37.1 46 0.0016 17.3 4.3 57 24-82 26-86 (101)
263 2cso_A Pleckstrin; DEP domain, 37.0 36 0.0012 18.4 2.8 35 5-39 45-82 (127)
264 3l8r_A PTCA, putative PTS syst 36.2 26 0.00088 18.9 2.1 19 16-34 46-64 (120)
265 3lpz_A GET4 (YOR164C homolog); 36.0 45 0.0015 21.2 3.5 48 9-56 37-108 (336)
266 3ygs_P Procaspase 9; apoptosis 35.8 38 0.0013 17.1 2.7 25 3-27 64-88 (97)
267 3mkq_A Coatomer beta'-subunit; 35.5 53 0.0018 22.2 4.0 29 6-34 680-708 (814)
268 2xm6_A Protein corresponding t 34.6 89 0.003 19.9 6.9 61 6-69 362-432 (490)
269 2crb_A Nuclear receptor bindin 34.6 50 0.0017 17.0 3.7 26 8-33 16-41 (97)
270 2uy1_A Cleavage stimulation fa 34.5 97 0.0033 20.3 5.5 58 9-69 17-77 (493)
271 2r9g_A AAA ATPase, central reg 34.2 73 0.0025 18.8 4.2 45 12-57 16-63 (204)
272 2wpv_A GET4, UPF0363 protein Y 34.0 50 0.0017 20.6 3.5 24 9-32 35-58 (312)
273 1nnv_A Hypothetical protein HI 33.7 20 0.00069 19.0 1.4 38 23-60 17-55 (110)
274 2f6m_A Suppressor protein STP2 33.4 43 0.0015 15.9 3.5 47 9-56 4-50 (65)
275 2i2x_B MTAC, methyltransferase 32.8 72 0.0025 19.1 3.9 42 17-58 46-87 (258)
276 2v6y_A AAA family ATPase, P60 32.7 27 0.00093 17.2 1.8 18 17-34 21-38 (83)
277 3hfh_A Transcription elongatio 32.4 35 0.0012 19.4 2.4 30 24-54 5-35 (190)
278 2bn5_A PSI; nuclear protein, s 32.3 32 0.0011 14.1 2.0 21 14-34 9-29 (33)
279 2w2u_A Hypothetical P60 katani 32.2 28 0.00096 17.2 1.8 18 17-34 29-46 (83)
280 4fhn_B Nucleoporin NUP120; pro 32.1 75 0.0025 23.3 4.5 50 9-60 940-989 (1139)
281 2ets_A Hypothetical protein; s 31.2 68 0.0023 17.5 3.5 32 8-41 11-42 (128)
282 2eab_A Alpha-fucosidase; glyco 31.0 52 0.0018 23.8 3.5 31 13-43 728-758 (899)
283 3ly7_A Transcriptional activat 30.2 1.1E+02 0.0038 19.7 5.0 39 5-45 308-346 (372)
284 2hm2_Q ASC2, pyrin-only protei 29.5 20 0.0007 17.9 1.0 25 10-34 53-77 (89)
285 2cp9_A EF-TS, EF-TSMT, elongat 29.3 33 0.0011 16.3 1.7 15 20-34 35-49 (64)
286 2ftc_L MRPL20 protein; mitocho 29.1 72 0.0025 17.1 3.8 17 41-57 72-88 (118)
287 1klx_A Cysteine rich protein B 29.1 66 0.0022 16.7 7.0 61 6-69 56-126 (138)
288 4b4t_S RPN3, 26S proteasome re 28.6 69 0.0024 21.7 3.6 28 7-34 231-258 (523)
289 1v54_I STA, cytochrome C oxida 27.0 41 0.0014 16.4 1.8 14 26-39 56-69 (73)
290 3bge_A Predicted ATPase; struc 26.9 1E+02 0.0035 18.2 4.5 40 12-51 9-51 (201)
291 4ewi_A Nacht, LRR and PYD doma 26.8 24 0.00082 18.7 1.0 24 11-34 59-82 (113)
292 4a5x_A MITD1, MIT domain-conta 26.7 40 0.0014 16.8 1.8 17 18-34 27-43 (86)
293 3s6n_M SurviVal motor neuron p 26.3 45 0.0015 13.9 3.1 21 11-37 12-32 (37)
294 2pk8_A Uncharacterized protein 26.2 49 0.0017 17.1 2.0 19 27-45 23-41 (103)
295 2bbr_A Viral CAsp8 and FADD-li 26.0 62 0.0021 18.9 2.7 46 8-53 113-165 (195)
296 2uwj_G Type III export protein 25.6 83 0.0028 16.7 5.0 49 15-69 47-97 (115)
297 2f40_A Hypothetical protein PF 25.6 0.99 3.4E-05 23.1 -4.3 19 5-23 32-50 (96)
298 3fke_A Polymerase cofactor VP3 25.6 18 0.00063 19.3 0.4 34 27-60 10-43 (129)
299 2zk9_X Protein-glutaminase; de 25.3 24 0.00083 20.4 0.8 38 5-42 6-62 (185)
300 1jog_A Hypothetical protein HI 25.2 91 0.0031 17.0 4.3 47 23-69 54-105 (146)
301 2p22_A Suppressor protein STP2 24.8 1.1E+02 0.0036 17.6 3.7 50 5-55 109-158 (174)
302 4a1n_A Nuclease EXOG, mitochon 24.6 47 0.0016 21.1 2.1 24 20-43 279-302 (335)
303 3qf2_A Nacht, LRR and PYD doma 24.5 21 0.00071 18.8 0.5 24 11-34 54-77 (110)
304 4f52_E Glomulin; cullin-ring E 24.2 1.2E+02 0.0041 20.8 4.2 64 5-68 26-114 (596)
305 3ctd_A Putative ATPase, AAA fa 24.0 1.2E+02 0.0041 18.0 4.5 45 12-56 37-84 (213)
306 3r8s_Q 50S ribosomal protein L 23.6 68 0.0023 17.2 2.4 13 44-56 74-86 (117)
307 3hjn_A DTMP kinase, thymidylat 23.5 50 0.0017 18.7 2.0 11 33-43 115-125 (197)
308 3t5v_B Nuclear mRNA export pro 23.0 1.2E+02 0.0041 20.0 3.9 33 8-40 177-209 (455)
309 3hzj_A Rabgap1L, RAB GTPase-ac 22.7 1.2E+02 0.0042 18.4 3.8 41 29-69 176-218 (310)
310 2j4b_A TAF5, transcription ini 22.5 1E+02 0.0035 16.7 3.5 64 18-84 46-110 (138)
311 2vkj_A TM1634; membrane protei 22.4 83 0.0028 16.2 2.4 21 16-36 62-82 (106)
312 4e2i_2 DNA polymerase alpha su 22.2 84 0.0029 15.5 3.9 55 26-82 5-63 (78)
313 3e4b_A ALGK; tetratricopeptide 22.1 1.6E+02 0.0055 18.7 7.0 30 8-37 177-209 (452)
314 2qq8_A TBC1 domain family memb 22.0 1E+02 0.0034 19.1 3.3 41 29-69 215-257 (334)
315 2v6x_A Vacuolar protein sortin 21.7 56 0.0019 15.9 1.8 17 18-34 24-40 (85)
316 3nr7_A DNA-binding protein H-N 21.3 54 0.0019 16.5 1.6 20 24-43 59-78 (86)
317 2km6_A Nacht, LRR and PYD doma 21.0 16 0.00056 19.1 -0.4 24 11-34 58-81 (106)
318 2bbz_A Viral CAsp8 and FADD-li 20.9 83 0.0029 19.1 2.6 34 24-59 134-168 (249)
319 2vxg_A LD41624, GE-1, CG6181-P 20.7 62 0.0021 17.7 1.9 17 14-30 7-23 (139)
320 1v7w_A Chitobiose phosphorylas 20.6 84 0.0029 22.0 3.0 21 13-33 649-669 (807)
321 3v2d_U 50S ribosomal protein L 20.6 69 0.0023 17.2 2.0 13 44-56 75-87 (118)
322 1bol_A Protein (ribonuclease R 20.5 1E+02 0.0035 18.0 3.0 21 33-53 150-171 (222)
323 3bqs_A Uncharacterized protein 20.4 98 0.0034 15.6 3.7 29 24-52 34-62 (93)
324 3qil_A Clathrin heavy chain 1; 20.4 85 0.0029 17.0 2.4 47 10-59 35-81 (125)
325 3qye_A TBC1 domain family memb 20.3 1.1E+02 0.0038 18.8 3.2 41 29-69 210-252 (331)
No 1
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.87 E-value=2.6e-22 Score=139.14 Aligned_cols=80 Identities=18% Similarity=0.174 Sum_probs=75.4
Q ss_pred CCcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchh-HH--HHHHhchhcccccccchhhh
Q 042815 4 PRDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIF-GV--TLMGIQPQNLWYYIDGQIDA 80 (87)
Q Consensus 4 ~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~-~~--~~~~~m~~~~~~g~~~~~~~ 80 (87)
.||++|||+||.|||+.|++++|.++|++|.+.|+.||.+||+++|.++|+.|.. +. ++|+.|..+ |+.||..+
T Consensus 162 ~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k---G~~PD~vt 238 (1134)
T 3spa_A 162 LLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE---GLKLQALF 238 (1134)
T ss_dssp TCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---TCCSHHHH
T ss_pred CCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---CCCCChhh
Confidence 5899999999999999999999999999999999999999999999999999985 44 899999998 99999999
Q ss_pred hhcccc
Q 042815 81 WQAACQ 86 (87)
Q Consensus 81 ~~~~~~ 86 (87)
|++++.
T Consensus 239 Y~~ll~ 244 (1134)
T 3spa_A 239 TAVLLS 244 (1134)
T ss_dssp HHSCCC
T ss_pred cccccC
Confidence 998763
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.86 E-value=4.8e-22 Score=130.39 Aligned_cols=80 Identities=8% Similarity=-0.005 Sum_probs=70.5
Q ss_pred CCcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchhcccccccchhhhh
Q 042815 4 PRDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQNLWYYIDGQIDAW 81 (87)
Q Consensus 4 ~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~~~~~g~~~~~~~~ 81 (87)
.||.+|||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++ ++|+.|... |+.||..+|
T Consensus 102 ~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~---G~~Pd~~ty 178 (501)
T 4g26_A 102 VPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES---EVVPEEPEL 178 (501)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCCCCHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc---CCCCCHHHH
Confidence 478889999999999999999999999999888999999999999999999998888 888888887 889999999
Q ss_pred hcccc
Q 042815 82 QAACQ 86 (87)
Q Consensus 82 ~~~~~ 86 (87)
+++|+
T Consensus 179 ~~Li~ 183 (501)
T 4g26_A 179 AALLK 183 (501)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88874
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.83 E-value=1.2e-20 Score=123.78 Aligned_cols=80 Identities=8% Similarity=0.048 Sum_probs=76.9
Q ss_pred CCcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchhcccccccchhhhh
Q 042815 4 PRDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQNLWYYIDGQIDAW 81 (87)
Q Consensus 4 ~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~~~~~g~~~~~~~~ 81 (87)
.||.++||+||.+|++.|++++|.++|++|.+.|+.||..||++||++|++.|++++ +++++|... |..|+..||
T Consensus 137 ~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~---g~~ps~~T~ 213 (501)
T 4g26_A 137 QPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL---VRQVSKSTF 213 (501)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TSSBCHHHH
T ss_pred CCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh---CCCcCHHHH
Confidence 589999999999999999999999999999999999999999999999999999999 999999988 999999999
Q ss_pred hcccc
Q 042815 82 QAACQ 86 (87)
Q Consensus 82 ~~~~~ 86 (87)
+.+++
T Consensus 214 ~~l~~ 218 (501)
T 4g26_A 214 DMIEE 218 (501)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98753
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.80 E-value=3.4e-20 Score=128.74 Aligned_cols=76 Identities=9% Similarity=0.059 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHHH---HcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchhcccccccchhhhhh
Q 042815 8 TTSSAMMLGLAKNGKNGMGVELFMSIE---KRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQNLWYYIDGQIDAWQ 82 (87)
Q Consensus 8 ~~~~~li~~~~~~g~~~~a~~l~~~m~---~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~~~~~g~~~~~~~~~ 82 (87)
+|||+||.|||+.|++++|.++|.+|. ..|+.||.+|||+||+++|+.|++++ ++|+.|... |+.||.+|||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~---G~~PDvvTYn 204 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA---GLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---TCCCCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCcHHHHH
Confidence 689999999999999999999998876 46899999999999999999999999 999999998 9999999999
Q ss_pred cccc
Q 042815 83 AACQ 86 (87)
Q Consensus 83 ~~~~ 86 (87)
++|+
T Consensus 205 tLI~ 208 (1134)
T 3spa_A 205 AALQ 208 (1134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9985
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.61 E-value=5.2e-08 Score=63.59 Aligned_cols=77 Identities=5% Similarity=-0.153 Sum_probs=63.7
Q ss_pred CCCCcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchhcccccccchhh
Q 042815 2 MPPRDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQNLWYYIDGQID 79 (87)
Q Consensus 2 m~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~~~~~g~~~~~~ 79 (87)
+|.+++..|+.++.+|.+.|++++|..+|++|.. ..||..++..+..+|.+.|++++ .+|+.+.. ..++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~ 151 (597)
T 2xpi_A 79 DSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL-----YNRSSA 151 (597)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG-----GGTCHH
T ss_pred chHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc-----cccchh
Confidence 4567899999999999999999999999999984 46888999999999999999998 78887753 356677
Q ss_pred hhhccc
Q 042815 80 AWQAAC 85 (87)
Q Consensus 80 ~~~~~~ 85 (87)
+++.++
T Consensus 152 ~~~~l~ 157 (597)
T 2xpi_A 152 CRYLAA 157 (597)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.36 E-value=1.3e-06 Score=57.04 Aligned_cols=63 Identities=13% Similarity=0.126 Sum_probs=38.9
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHc----CCCCC--HhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKR----GPRPN--AVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~pd--~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
|..+|+.+...|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|++++ ..++.+..
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4556666666666666666666666666544 55565 4566666666666666666 55555554
No 7
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.27 E-value=0.0014 Score=33.59 Aligned_cols=60 Identities=15% Similarity=0.061 Sum_probs=31.3
Q ss_pred HhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhch
Q 042815 7 ATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
...|..+...|.+.|++++|.++|.++.... ..+..++..+...+...|+.++ ..++...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 70 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4455555555666666666666666555432 1234445555555555555555 4444443
No 8
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.19 E-value=0.0026 Score=32.84 Aligned_cols=62 Identities=13% Similarity=0.055 Sum_probs=39.3
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
+...|..+...|.+.|++++|..+|+++...+ ..+...+..+...+...|+.++ ..++.+..
T Consensus 34 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 97 (136)
T 2fo7_A 34 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 97 (136)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45566666677777777777777777766543 2244566666666777777666 55555543
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.10 E-value=0.0027 Score=39.39 Aligned_cols=26 Identities=8% Similarity=0.096 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHH
Q 042815 9 TSSAMMLGLAKNGKNGMGVELFMSIE 34 (87)
Q Consensus 9 ~~~~li~~~~~~g~~~~a~~l~~~m~ 34 (87)
+|+.+...|.+.|++++|.+.|+++.
T Consensus 273 ~~~~l~~~~~~~g~~~~A~~~~~~al 298 (388)
T 1w3b_A 273 AYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33334444444444444444444433
No 10
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.06 E-value=0.0024 Score=39.59 Aligned_cols=62 Identities=6% Similarity=0.037 Sum_probs=50.5
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC-CHhhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRP-NAVTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
+..+|+.+...|.+.|++++|.+.|+++.... | +..+|..+...+.+.|+.++ ..++.+...
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 300 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56788999999999999999999999988653 4 45678888888888888888 777776653
No 11
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.05 E-value=0.0057 Score=31.23 Aligned_cols=64 Identities=14% Similarity=0.063 Sum_probs=52.8
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
.+...|..+...|.+.|++++|..+|+++.... ..+..++..+-..+...|+.++ ..++.....
T Consensus 41 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 41 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356788999999999999999999999998764 3366788888899999999988 777776643
No 12
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.02 E-value=0.0072 Score=31.09 Aligned_cols=63 Identities=14% Similarity=0.079 Sum_probs=51.6
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
.+...|..+...|.+.|++++|..+|+++.... ..+...+..+...+...|+.++ ..+..+..
T Consensus 67 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 356788899999999999999999999998764 2356788888899999999988 67766654
No 13
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=96.91 E-value=0.00014 Score=47.63 Aligned_cols=56 Identities=7% Similarity=0.078 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH-HHHHhchhc
Q 042815 8 TTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV-TLMGIQPQN 69 (87)
Q Consensus 8 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~-~~~~~m~~~ 69 (87)
.+|+.|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++ ..+..|..+
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark 89 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARK 89 (449)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4899999999999999999999976 3578889999999999998888 335555544
No 14
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=96.84 E-value=0.0032 Score=39.55 Aligned_cols=62 Identities=11% Similarity=0.025 Sum_probs=34.7
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
+...|..+...|.+.|++++|+.+|+++.... ..+..++..+..++...|+.++ ..|+.+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44556666666666666666666666655432 2245555555566666666555 55554443
No 15
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=96.78 E-value=0.007 Score=38.02 Aligned_cols=64 Identities=5% Similarity=-0.176 Sum_probs=55.3
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
.+..+|..+...|.+.|++++|...|+++.+.+ ..+...+..+..++.+.|++++ ..|+.+...
T Consensus 58 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 123 (450)
T 2y4t_A 58 DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS 123 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 467899999999999999999999999998775 2357789999999999999988 888887654
No 16
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=96.62 E-value=0.021 Score=31.61 Aligned_cols=72 Identities=8% Similarity=0.004 Sum_probs=56.4
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchhcccccccchhhhhh
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQNLWYYIDGQIDAWQ 82 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~~~~~g~~~~~~~~~ 82 (87)
.+...|..+-..|.+.|++++|++.|++..+.. .-+...|..+-.++.+.|+.++ ..|++... +.|+...|+
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~a~~~ 178 (184)
T 3vtx_A 105 VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALE-----KEEKKAKYE 178 (184)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----TTHHHHHHC
T ss_pred cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHh-----CCccCHHHH
Confidence 456788888899999999999999999988664 2256688888899999999988 77777654 356655554
No 17
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.58 E-value=0.012 Score=30.59 Aligned_cols=63 Identities=10% Similarity=-0.083 Sum_probs=50.6
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
+...|..+-..|.+.|++++|+..|++..+..-. +...+..+-.++...|+.++ ..+......
T Consensus 26 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 26 LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567888999999999999999999998876422 46677888888899999988 666666543
No 18
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=96.50 E-value=0.011 Score=33.38 Aligned_cols=60 Identities=7% Similarity=-0.296 Sum_probs=28.0
Q ss_pred HhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHccc-chhHH--HHHHhch
Q 042815 7 ATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKI-KIFGV--TLMGIQP 67 (87)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~-~~~~~--~~~~~m~ 67 (87)
...|..+...|.+.|++++|.+.|++..... ..+..++..+...+... |+.++ ..++...
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 104 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKAL 104 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3444445555555555555555555544332 11333444444555555 55544 4444433
No 19
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.47 E-value=0.024 Score=28.77 Aligned_cols=62 Identities=15% Similarity=0.126 Sum_probs=49.9
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhch
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
.|...|..+-..|.+.|++++|+..|++..+..-. +...|..+-.++...|+.++ ..+++..
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36678899999999999999999999998876422 45578888888999999888 6666544
No 20
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.39 E-value=0.012 Score=34.10 Aligned_cols=20 Identities=5% Similarity=0.066 Sum_probs=7.4
Q ss_pred HHHHHHhcCCchhHHHHHHH
Q 042815 13 MMLGLAKNGKNGMGVELFMS 32 (87)
Q Consensus 13 li~~~~~~g~~~~a~~l~~~ 32 (87)
+...|.+.|++++|.+.|++
T Consensus 77 la~~~~~~~~~~~A~~~~~~ 96 (252)
T 2ho1_A 77 LAVVFQTEMEPKLADEEYRK 96 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 33333333333333333333
No 21
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.36 E-value=0.035 Score=28.61 Aligned_cols=62 Identities=13% Similarity=0.022 Sum_probs=36.4
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhch
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
.+...|..+-..|.+.|++++|...|++..... ..+...+..+-..+...|+.++ ..++...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 77 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECI 77 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 345566666666666777777777766655432 1144555566666666666665 4554444
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=96.29 E-value=0.014 Score=35.74 Aligned_cols=62 Identities=5% Similarity=-0.054 Sum_probs=45.1
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
+..+|..+...|.+.|++++|...|++..+.. ..+..+|..+-.++...|+.++ ..|+....
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 275 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALE 275 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56677788888888888888888888877553 2256677777788888888777 66666554
No 23
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.29 E-value=0.015 Score=29.05 Aligned_cols=52 Identities=10% Similarity=-0.150 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC--CHhhHHHHHHHHccc-chhHH
Q 042815 8 TTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRP--NAVTFVGVLTAYGKI-KIFGV 60 (87)
Q Consensus 8 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p--d~~t~~~ll~~~~~~-~~~~~ 60 (87)
..|..+-..|.+.|++++|...|++..+.. .. +...+..+-.++... |+.++
T Consensus 41 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~ 95 (112)
T 2kck_A 41 KYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALRYIEGKEVE 95 (112)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTTCSSCSHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHHHhCCHHH
Confidence 344444444444555555555554444321 11 233444444444444 44444
No 24
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=96.29 E-value=0.029 Score=30.49 Aligned_cols=59 Identities=14% Similarity=0.134 Sum_probs=28.4
Q ss_pred HhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhc
Q 042815 7 ATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQ 66 (87)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m 66 (87)
...|..+...|.+.|++++|.+.|++..... ..+...+..+...+...|+.++ ..++..
T Consensus 76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 136 (186)
T 3as5_A 76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIA 136 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 3445555555555555555555555554332 1233444444455555555544 444443
No 25
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=96.28 E-value=0.024 Score=31.94 Aligned_cols=62 Identities=11% Similarity=0.054 Sum_probs=33.1
Q ss_pred cHhHHHHHHHHHHhc-CCchhHHHHHHHHHHcCCCCC-HhhHHHHHHHHcccchhHH--HHHHhch
Q 042815 6 DATTSSAMMLGLAKN-GKNGMGVELFMSIEKRGPRPN-AVTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 6 ~~~~~~~li~~~~~~-g~~~~a~~l~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
+...|..+...|.+. |++++|...|++....+..|+ ...+..+-..+...|+.++ ..++...
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 75 SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSL 140 (225)
T ss_dssp CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555566666666 666666666666555222232 3355555555555565555 4444443
No 26
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.26 E-value=0.031 Score=27.05 Aligned_cols=63 Identities=14% Similarity=0.054 Sum_probs=49.8
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
+...|..+-..|.+.|++++|...|++..... ..+...+..+-..+...|+.++ ..++.....
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45678888889999999999999999987654 2256677788888888999888 667666543
No 27
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=96.25 E-value=0.029 Score=30.46 Aligned_cols=64 Identities=14% Similarity=0.135 Sum_probs=47.3
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
.+...|..+...|.+.|++++|...|++..... ..+...+..+...+...|+.++ ..++.....
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 105 (186)
T 3as5_A 40 FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA 105 (186)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 356778888888888899999999888887653 2356677777777888888877 666665543
No 28
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.22 E-value=0.043 Score=28.16 Aligned_cols=63 Identities=3% Similarity=-0.183 Sum_probs=50.3
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
.+...|..+-..|.+.|++++|+..|++..... ..+...|..+-.++...|+.++ ..|+....
T Consensus 17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 17 DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467789999999999999999999999988664 2245678888888888898888 66665543
No 29
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.014 Score=37.04 Aligned_cols=64 Identities=13% Similarity=0.005 Sum_probs=41.2
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
||...|..+...|.+.|++++|...|+++.... ..+...+..+..++...|+.++ ..|+.+...
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 102 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLN 102 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 466667777777777777777777777766543 1244566666677777777766 666655543
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=96.15 E-value=0.017 Score=35.09 Aligned_cols=35 Identities=11% Similarity=-0.033 Sum_probs=16.9
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRP 40 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p 40 (87)
+..++..+...|.+.|+.++|++.|+++...+..|
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P 98 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDV 98 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCC
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCC
Confidence 34444444445555555555555555544444334
No 31
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=96.13 E-value=0.024 Score=36.02 Aligned_cols=62 Identities=8% Similarity=-0.023 Sum_probs=52.2
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
+...|-..-..|.+.|++++|+..|.++.... ||...+..+..++.+.|+++. ..++.....
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 68 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALEL 68 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 34566777788999999999999999998775 899999999999999999988 777777654
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=96.13 E-value=0.033 Score=34.08 Aligned_cols=61 Identities=10% Similarity=0.001 Sum_probs=37.1
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhch
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
+..+|..+...|.+.|++++|+..|++..... ..+..++..+-..+...|+.++ ..++...
T Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 160 (365)
T 4eqf_A 98 DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWI 160 (365)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 45566666666666666666666666665543 1235566666666666666666 5555544
No 33
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.045 Score=27.46 Aligned_cols=63 Identities=13% Similarity=0.040 Sum_probs=49.5
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
++...|..+-..+.+.|++++|.+.|++..... ..+...+..+-.++...|+.++ ..++....
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 356678888888999999999999999987653 2256677788888888999888 66776654
No 34
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.06 E-value=0.053 Score=27.88 Aligned_cols=64 Identities=9% Similarity=-0.078 Sum_probs=51.7
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
.+...|..+-..|.+.|++++|...|++..... ..+...+..+-.++...|+.++ ..++.....
T Consensus 48 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 48 KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 467788999999999999999999999988764 2256688888888899999988 777766543
No 35
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.01 E-value=0.041 Score=31.79 Aligned_cols=52 Identities=12% Similarity=-0.026 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH
Q 042815 8 TTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV 60 (87)
Q Consensus 8 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~ 60 (87)
..|..+...|.+.|++++|...|++..... ..+...+..+...+...|+.++
T Consensus 142 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 142 RVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 334444444444444444444444443322 1123334444444444444443
No 36
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=95.99 E-value=0.047 Score=31.19 Aligned_cols=52 Identities=13% Similarity=0.111 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH
Q 042815 8 TTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV 60 (87)
Q Consensus 8 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~ 60 (87)
..|..+...|.+.|++++|...|++..... ..+..++..+-..+...|+.++
T Consensus 160 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 211 (243)
T 2q7f_A 160 EARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREK 211 (243)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHH
Confidence 344444444455555555555555444332 1123344444444444444444
No 37
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=95.97 E-value=0.049 Score=31.10 Aligned_cols=61 Identities=10% Similarity=0.071 Sum_probs=30.3
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhch
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
+...|..+...|.+.|++++|...|++..... ..+...+..+...+...|+.+. ..++...
T Consensus 56 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 118 (243)
T 2q7f_A 56 DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKAL 118 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34455555555555555555555555554432 1234444555555555555554 4444433
No 38
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=95.97 E-value=0.028 Score=32.76 Aligned_cols=60 Identities=8% Similarity=-0.132 Sum_probs=32.0
Q ss_pred HhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhch
Q 042815 7 ATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
...|..+-..|.+.|++++|...|++..... ..+...+..+-..+...|++++ ..++...
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 104 (275)
T 1xnf_A 43 AQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL 104 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4455555555666666666666666655442 1134455555555555555555 4444443
No 39
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=95.96 E-value=0.032 Score=33.98 Aligned_cols=62 Identities=6% Similarity=-0.014 Sum_probs=47.2
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
+..+|..+...|.+.|++++|...|++..... ..+..++..+-..+...|+.++ ..++....
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 279 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALE 279 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46778888888888888888888888877653 2246678888888888888877 66766654
No 40
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=95.93 E-value=0.067 Score=27.92 Aligned_cols=55 Identities=15% Similarity=-0.035 Sum_probs=28.1
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV 60 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~ 60 (87)
.+...|..+-..|.+.|++++|...|.+..... ..+...+..+-.++...|+.+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 61 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQ 61 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHH
Confidence 344555555555555566666666555554432 1133444455555555555554
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=95.90 E-value=0.05 Score=31.65 Aligned_cols=63 Identities=11% Similarity=-0.129 Sum_probs=47.5
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
.+...|..+-..|.+.|++++|...|++..... ..+...+..+-..+...|+.++ ..++....
T Consensus 75 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 75 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 356778888888888888888888888887653 2256677778888888888877 66666654
No 42
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=95.86 E-value=0.059 Score=26.75 Aligned_cols=64 Identities=6% Similarity=-0.051 Sum_probs=51.4
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
.+...|..+-..|.+.|++++|...|++..... ..+...+..+-..+...|+.++ ..++.....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 69 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINV 69 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 456678888888999999999999999988664 2356678888888889999988 777776654
No 43
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=95.85 E-value=0.043 Score=32.68 Aligned_cols=62 Identities=5% Similarity=-0.120 Sum_probs=43.9
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
+...|..+...|.+.|++++|...|++..... ..+..++..+-..+...|+.++ ..++....
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55677777778888888888888888876553 2245677777777777777777 66666554
No 44
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=95.83 E-value=0.061 Score=26.90 Aligned_cols=61 Identities=11% Similarity=-0.094 Sum_probs=37.9
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhch
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
+...|..+-..|.+.|++++|...|++..... ..+...+..+-.++...|+.++ ..++...
T Consensus 37 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 37 NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEEAKRTYEEGL 99 (118)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45566666666777777777777777766543 1244556666666666776666 5555544
No 45
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=95.82 E-value=0.04 Score=31.81 Aligned_cols=62 Identities=8% Similarity=-0.111 Sum_probs=52.3
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
+...|..+=..|.+.|++++|+..|++..+.. .+...+..+-.++...|+.++ ..|+.....
T Consensus 117 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 117 YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ 180 (217)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56778888888999999999999999998777 688888888889999999988 777776643
No 46
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=95.82 E-value=0.082 Score=28.00 Aligned_cols=61 Identities=7% Similarity=-0.109 Sum_probs=37.3
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhch
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
+...|..+-..|.+.|++++|+..|++..+.. ..+...|..+-.++...|++++ ..|+...
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al 108 (126)
T 4gco_A 46 NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMREWSKAQRAYEDAL 108 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45566666666777777777777777665543 1234456666666666666666 5555544
No 47
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.77 E-value=0.083 Score=27.73 Aligned_cols=61 Identities=13% Similarity=-0.024 Sum_probs=37.6
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCC----HhhHHHHHHHHcccchhHH--HHHHhch
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPN----AVTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd----~~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
.+...|..+-..+.+.|++++|...|++.... .|+ ...+..+-.++...|++++ ..++...
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 92 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAI 92 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 35566666667777777777777777776543 344 4555556666666666666 4555444
No 48
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=95.77 E-value=0.07 Score=32.45 Aligned_cols=61 Identities=5% Similarity=-0.007 Sum_probs=35.4
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhch
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
+..+|..+...|.+.|++++|...|++..... ..+..++..+...+...|+.++ ..++...
T Consensus 97 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 159 (368)
T 1fch_A 97 HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWL 159 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44556666666666666666666666665443 2245556666666666666655 5555444
No 49
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=95.76 E-value=0.048 Score=32.45 Aligned_cols=64 Identities=8% Similarity=0.055 Sum_probs=52.7
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
.+...|..+...|.+.|++++|...|++..... ..+..++..+-..+...|+.++ ..++.....
T Consensus 204 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 204 DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 456789999999999999999999999988664 2356788889999999999988 777766543
No 50
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=95.73 E-value=0.057 Score=32.78 Aligned_cols=52 Identities=4% Similarity=-0.031 Sum_probs=25.0
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchh
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIF 58 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~ 58 (87)
+...|+.+-..|.+.|++++|.+.|++..... .-|..++..+...+...|+.
T Consensus 199 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~ 250 (291)
T 3mkr_A 199 TLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKP 250 (291)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCC
Confidence 34445555555555555555555555544332 11333444444444445544
No 51
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=95.71 E-value=0.023 Score=37.33 Aligned_cols=46 Identities=17% Similarity=0.039 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH
Q 042815 9 TSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV 60 (87)
Q Consensus 9 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~ 60 (87)
.|..+..++.+.|++++|.+.|+++ .+..+|..++.+|...|+++.
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~l 195 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRL 195 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHH
Confidence 3445555555555555555555544 155566666666666654443
No 52
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=95.71 E-value=0.056 Score=29.91 Aligned_cols=51 Identities=12% Similarity=0.053 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH
Q 042815 9 TSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV 60 (87)
Q Consensus 9 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~ 60 (87)
.|..+=..|.+.|++++|+..|++..... .-+...|..+=.++...|+.++
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~ 88 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQ 88 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHH
Confidence 34444444444555555555555544332 1133344444444444444444
No 53
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=95.70 E-value=0.051 Score=31.21 Aligned_cols=61 Identities=8% Similarity=-0.092 Sum_probs=52.2
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
....|..+-..|.+.|++++|..+|++..+.. .+...+..+-.++...|+.++ ..++....
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 66 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVE 66 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34578888899999999999999999999877 788899999999999999988 66666654
No 54
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=95.69 E-value=0.096 Score=27.98 Aligned_cols=61 Identities=5% Similarity=-0.218 Sum_probs=34.7
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhch
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
+...|..+-..|.+.|++++|+..|++..... .-+...+..+-.++...|+.++ ..|+...
T Consensus 51 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 51 DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGDLDGAESGFYSAR 113 (142)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44556666666666666666666666665443 1133445555556666666665 4555443
No 55
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=95.67 E-value=0.076 Score=29.37 Aligned_cols=63 Identities=6% Similarity=-0.079 Sum_probs=52.9
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC-CHhhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRP-NAVTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
.|...|..+=..|.+.|++++|+..|++..... | +...|..+=.++...|+.++ ..|+.....
T Consensus 68 ~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 68 YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467889999999999999999999999988664 4 45678888889999999998 777776654
No 56
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=95.65 E-value=0.064 Score=29.22 Aligned_cols=61 Identities=3% Similarity=-0.132 Sum_probs=32.5
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhch
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
+...|..+-..|.+.|++++|+..|++..... .-+...+..+-.++...|+.++ ..|+...
T Consensus 54 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 54 DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555555555666666666666666655432 1133445555555556666655 4444443
No 57
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=95.62 E-value=0.055 Score=32.79 Aligned_cols=63 Identities=3% Similarity=-0.114 Sum_probs=49.0
Q ss_pred CCcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHh--hHHHHHHHHcccchhHH--HHHHhchh
Q 042815 4 PRDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAV--TFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 4 ~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~--t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
+.+...|..+...+.+.|++++|.++|++..+ +.|+.. .|..+...+.+.|+++. .+|++...
T Consensus 96 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 162 (308)
T 2ond_A 96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 162 (308)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34566899999999999999999999999876 456533 68888888888888877 77776654
No 58
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=95.59 E-value=0.1 Score=28.36 Aligned_cols=64 Identities=6% Similarity=0.053 Sum_probs=51.0
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
.+...|..+-..+.+.|++++|...|++..... ..+...|..+-.++...|+.++ ..|+.....
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 356678888889999999999999999987664 2266678788888889999988 777776643
No 59
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=95.58 E-value=0.025 Score=28.96 Aligned_cols=63 Identities=14% Similarity=0.082 Sum_probs=34.9
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCC--CCC----HhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGP--RPN----AVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~--~pd----~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
+...|..+-..|.+.|++++|...|.+.....- .++ ..++..+-..+...|+.+. ..|+....
T Consensus 37 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 37 NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 445566666666666666666666666554321 111 4455555556666666655 55554443
No 60
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=95.50 E-value=0.096 Score=26.60 Aligned_cols=61 Identities=8% Similarity=-0.110 Sum_probs=32.4
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhch
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
+...|..+-..|.+.|++++|...|.+..... ..+...+..+-..+...|+.+. ..++...
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 45 NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNKHVEAVAYYKKAL 107 (131)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34455555556666666666666666655432 1134455555555555565555 4444443
No 61
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=95.47 E-value=0.12 Score=28.09 Aligned_cols=53 Identities=8% Similarity=-0.109 Sum_probs=24.7
Q ss_pred HhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH
Q 042815 7 ATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV 60 (87)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~ 60 (87)
...|..+-..|.+.|++++|+..|++..... .-+...|..+-.++...|+.++
T Consensus 45 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~ 97 (164)
T 3sz7_A 45 PIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARFDMADYKG 97 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHH
Confidence 3444445555555555555555555544332 1123344444444444555444
No 62
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=95.43 E-value=0.079 Score=34.50 Aligned_cols=71 Identities=17% Similarity=0.111 Sum_probs=56.0
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC-CHhhHHHHHHHHcccchhHH--HHHHhchhcccccccchhhhh
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRP-NAVTFVGVLTAYGKIKIFGV--TLMGIQPQNLWYYIDGQIDAW 81 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~--~~~~~m~~~~~~g~~~~~~~~ 81 (87)
.|...|..++. +.+.|++++|..+|+++.+. .| +...|...+..+.+.|+.+. .+|++.... .|+...|
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~-----~p~~~lw 82 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK-----VLHIDLW 82 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT-----CCCHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCChHHH
Confidence 36789999998 58899999999999998754 45 45578889999988998888 888888765 3565555
Q ss_pred hc
Q 042815 82 QA 83 (87)
Q Consensus 82 ~~ 83 (87)
..
T Consensus 83 ~~ 84 (530)
T 2ooe_A 83 KC 84 (530)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 63
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=95.42 E-value=0.11 Score=29.69 Aligned_cols=54 Identities=17% Similarity=0.009 Sum_probs=27.4
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV 60 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~ 60 (87)
+...|..+-..|.+.|++++|...|++..... ..+...+..+-..+...|+.++
T Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 225 (258)
T 3uq3_A 172 DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYAS 225 (258)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHH
Confidence 34455555555555555555555555554432 1134445555555555555554
No 64
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=95.42 E-value=0.11 Score=26.86 Aligned_cols=61 Identities=15% Similarity=0.006 Sum_probs=39.2
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhch
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
+...|..+-..|.+.|++++|+..|++..... .-+...|..+-.++...|+.++ ..|+...
T Consensus 37 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 37 DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAAR 99 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 45667777777777777777777777766543 1134566666666667777766 5555444
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=95.42 E-value=0.094 Score=28.91 Aligned_cols=61 Identities=13% Similarity=0.056 Sum_probs=45.2
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC-CHhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRP-NAVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
+...|..+=..|.+.|++++|++.|++..+.. | +...+..+-.++.+.|+.++ ..+.....
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~ 67 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVV 67 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 45678888888888899999999998877653 4 55677777788888888877 55554443
No 66
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=95.38 E-value=0.11 Score=26.46 Aligned_cols=62 Identities=8% Similarity=-0.025 Sum_probs=49.2
Q ss_pred HhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 7 ATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
...|..+-..|.+.|++++|...|.+..... ..+...+..+-..+...|+.++ ..++.....
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 67 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 4578888889999999999999999988664 3356678888888888898888 666665543
No 67
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=95.37 E-value=0.094 Score=28.02 Aligned_cols=63 Identities=11% Similarity=0.084 Sum_probs=49.3
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
+...+..+-..+.+.|++++|...|++..... ..+...|..+-.++...|+.++ ..|+.....
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 81 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALM 81 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45567777788999999999999999988664 2266677778888888999988 777766643
No 68
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=95.36 E-value=0.067 Score=31.84 Aligned_cols=60 Identities=7% Similarity=0.024 Sum_probs=28.6
Q ss_pred HhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhch
Q 042815 7 ATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
...|..+-..|.+.|++++|...|++.....- .+...+..+-..+...|+.++ ..+....
T Consensus 125 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 186 (330)
T 3hym_B 125 GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNSKLAERFFSQAL 186 (330)
T ss_dssp THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34455555555555555555555555544321 122334444445555555554 4444433
No 69
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=95.32 E-value=0.11 Score=28.33 Aligned_cols=64 Identities=6% Similarity=-0.002 Sum_probs=52.0
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
.+...|..+-..|.+.|++++|+..|++..... .-+...|..+-.++...|++++ ..|+.....
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 74 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV 74 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 456788888899999999999999999988664 2266788888889999999988 777766543
No 70
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=95.28 E-value=0.083 Score=31.44 Aligned_cols=64 Identities=9% Similarity=-0.119 Sum_probs=52.7
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
.+...|..+-..|.+.|++++|...|++..+.. ..+...+..+-..+.+.|+.++ ..++.....
T Consensus 234 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 234 KWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp TCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 345789999999999999999999999988764 2256688888899999999988 777776643
No 71
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=95.24 E-value=0.15 Score=28.64 Aligned_cols=64 Identities=8% Similarity=-0.058 Sum_probs=49.8
Q ss_pred CCcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 4 PRDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 4 ~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
.|+...|..+-..|.+.|++++|+..|++..... ..+...+..+-.++...|+.++ ..|+....
T Consensus 34 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 99 (213)
T 1hh8_A 34 DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALI 99 (213)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3467788888899999999999999999987654 2356677788888888888888 66666554
No 72
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=95.22 E-value=0.12 Score=25.82 Aligned_cols=63 Identities=11% Similarity=-0.053 Sum_probs=49.2
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
+...|..+...+.+.|++++|...|++..... ..+...+..+-..+...|+.++ ..+......
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 67 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 45678888899999999999999999987653 2256677777788888888887 666665543
No 73
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=95.07 E-value=0.14 Score=25.96 Aligned_cols=64 Identities=16% Similarity=0.015 Sum_probs=50.8
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
.+...|..+-..+...|++++|...|++..... ..+...+..+-..+...|+.++ ..++.....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 75 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI 75 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc
Confidence 356788888999999999999999999988653 2356778888888888998888 666666543
No 74
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=95.05 E-value=0.097 Score=28.98 Aligned_cols=60 Identities=8% Similarity=0.056 Sum_probs=40.8
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC-CHhhHHHHHHHHcccchhHH--HHHHh
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRP-NAVTFVGVLTAYGKIKIFGV--TLMGI 65 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~--~~~~~ 65 (87)
+...|..+-..|.+.|++++|...|++.....-.+ +...+..+...+...|+.++ ..|.+
T Consensus 107 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 107 NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 45677777778888888888888888876553322 24466677777777777765 44443
No 75
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=94.99 E-value=0.17 Score=28.86 Aligned_cols=53 Identities=11% Similarity=-0.009 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH
Q 042815 8 TTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV 60 (87)
Q Consensus 8 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~ 60 (87)
..|...=..|.+.|++++|+..|++.....-.+|...+..+-.++...|+.++
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKE 60 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHH
Confidence 44444444555555555555555555544322344444444444455555544
No 76
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=94.95 E-value=0.17 Score=26.31 Aligned_cols=63 Identities=5% Similarity=-0.163 Sum_probs=50.8
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
.+...|..+-..|.+.|++++|...|++..... .-+...+..+-.++...|+.+. ..|.....
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 41 LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 356788999999999999999999999988764 2256688888888889999988 66666553
No 77
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=94.95 E-value=0.19 Score=26.83 Aligned_cols=62 Identities=6% Similarity=-0.070 Sum_probs=36.9
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
+...|..+-..|.+.|++++|...|.+..... ..+...+..+-.++...|+.++ ..++....
T Consensus 46 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 46 NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALRDYETVVK 109 (166)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45566666666677777777777777665442 1234455556666666666666 55555443
No 78
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=94.86 E-value=0.19 Score=26.33 Aligned_cols=53 Identities=11% Similarity=0.111 Sum_probs=25.3
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC-CHhhHHHHHHHHcccchhHH
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRP-NAVTFVGVLTAYGKIKIFGV 60 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~ 60 (87)
+...|..+=..+.+.|++++|+..|++..+.. | +...+..+-.++...|+.++
T Consensus 50 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~~~~~g~~~~ 103 (121)
T 1hxi_A 50 REEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEHNANA 103 (121)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHH
Confidence 33444444445555555555555555544332 2 23344444444555555544
No 79
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=94.78 E-value=0.13 Score=27.97 Aligned_cols=52 Identities=12% Similarity=0.064 Sum_probs=24.4
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC-CHhhHHHHHHHHcccchhH
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRP-NAVTFVGVLTAYGKIKIFG 59 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~ 59 (87)
+..+|..+-..|.+.|++++|+..|++..+. .| +...+..+-..+.+.|+.+
T Consensus 64 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~ 116 (150)
T 4ga2_A 64 DPKAHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTD 116 (150)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSS
T ss_pred CHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChH
Confidence 3444555555555555555555555554433 22 2334444444444444443
No 80
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.69 E-value=0.21 Score=26.10 Aligned_cols=62 Identities=6% Similarity=-0.170 Sum_probs=49.4
Q ss_pred HhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 7 ATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
...|..+-..|.+.|++++|+..|++..... ..+...+..+-.++...|+.++ ..|+.....
T Consensus 65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 65 AVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6788888999999999999999999987653 2256677778888888898888 777766543
No 81
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=94.56 E-value=0.21 Score=30.23 Aligned_cols=63 Identities=13% Similarity=0.029 Sum_probs=41.9
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcC-CCCC--HhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRG-PRPN--AVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~pd--~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
+...|..++..+.+.|++++|..+|++..... +.|+ ...|..++....+.|+.+. .++.+...
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 202 IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45677777777777888888888888877653 4553 4466666666666677666 55555443
No 82
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=94.55 E-value=0.083 Score=31.16 Aligned_cols=63 Identities=13% Similarity=0.093 Sum_probs=49.0
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHc-------CCCCCHhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKR-------GPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-------g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
+..+|..+-..|...|++++|..+|++.... .-......+..+-..+...|++++ ..++....
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 97 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA 97 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999998763 222345577888888888999888 66655543
No 83
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=94.51 E-value=0.2 Score=28.82 Aligned_cols=63 Identities=11% Similarity=0.056 Sum_probs=50.1
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC-CHhhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRP-NAVTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
++...|..+-..+.+.|++++|...|++..+. .| +...+..+-..+...|+.++ ..+++....
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 68 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR 68 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 36667888888999999999999999998755 44 56678888888889999988 777776643
No 84
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=94.48 E-value=0.23 Score=25.64 Aligned_cols=62 Identities=13% Similarity=0.040 Sum_probs=49.4
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
+...|..+=..+.+.|++++|+..|.+..... ..+...|..+-.++.+.|++++ ..++....
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE 66 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34567777788999999999999999987664 2366788888888999999988 66766654
No 85
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=94.27 E-value=0.2 Score=32.47 Aligned_cols=61 Identities=10% Similarity=-0.036 Sum_probs=44.2
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHccc---------chhHH--HHHHhchh
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKI---------KIFGV--TLMGIQPQ 68 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~---------~~~~~--~~~~~m~~ 68 (87)
+...|..+-..|.+.|++++|.+.|++..+. .|+...+..+-..+... |++++ ..+++...
T Consensus 136 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 207 (474)
T 4abn_A 136 LVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ 207 (474)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH
Confidence 4567777888888888888888888886654 46667777777777777 77776 66665554
No 86
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=94.23 E-value=0.22 Score=29.83 Aligned_cols=62 Identities=5% Similarity=-0.195 Sum_probs=40.8
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
+...|..+-..|.+.|++++|...|++..... .-+...+..+-..+...|+.++ ..++....
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 99 (359)
T 3ieg_A 36 NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK 99 (359)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 45567777777777777777777777766543 1144566667777777777766 66665554
No 87
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=94.22 E-value=0.34 Score=27.60 Aligned_cols=62 Identities=16% Similarity=0.086 Sum_probs=47.8
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC-CHhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRP-NAVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
+|...|..+-..|.+.|++++|+..|++.... .| +...+..+-..+...|+.++ ..++....
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 104 (228)
T 4i17_A 40 QDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIK 104 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 56667777888889999999999999997755 44 45577778888888888887 66666654
No 88
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=94.20 E-value=0.17 Score=32.89 Aligned_cols=53 Identities=9% Similarity=-0.158 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHHHH-----cC-CCCCHh-hHHHHHHHHcccchhHH
Q 042815 8 TTSSAMMLGLAKNGKNGMGVELFMSIEK-----RG-PRPNAV-TFVGVLTAYGKIKIFGV 60 (87)
Q Consensus 8 ~~~~~li~~~~~~g~~~~a~~l~~~m~~-----~g-~~pd~~-t~~~ll~~~~~~~~~~~ 60 (87)
.++|.|-..|...|++++|+.++++..+ .| -.|++. +++.+-..|...|+.++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~e 400 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAA 400 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHH
Confidence 6899999999999999999999999763 23 345555 78899999999999988
No 89
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=94.12 E-value=0.1 Score=29.37 Aligned_cols=61 Identities=10% Similarity=0.022 Sum_probs=49.3
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
.+...+..+-..+.+.|++++|...|.+. +.|+...+..+-..+...|+.++ ..++.....
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 66 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR 66 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34556677777889999999999999886 36788899999999999999988 677666543
No 90
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=94.05 E-value=0.17 Score=29.22 Aligned_cols=62 Identities=19% Similarity=0.114 Sum_probs=49.3
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHc------CCCC-CHhhHHHHHHHHcccchhHH--HHHHhch
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKR------GPRP-NAVTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~------g~~p-d~~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
...+|..+-..|...|++++|...|++.... +-.| ...++..+-..+...|++++ ..+....
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 112 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 112 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4568899999999999999999999998754 3334 34588888899999999988 6665554
No 91
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=93.89 E-value=0.27 Score=28.51 Aligned_cols=60 Identities=7% Similarity=-0.166 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCH--hhHHHHHHHHcccchhHH--HHHHhch
Q 042815 8 TTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNA--VTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 8 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~--~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
..|..+-..|.+.|++++|+..|++....+-.|+. ..|..+-..+...|+.++ ..++...
T Consensus 38 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~ 101 (272)
T 3u4t_A 38 YIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAV 101 (272)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 35555555666666666666666665542211111 124455555555555555 4444443
No 92
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=93.82 E-value=0.22 Score=31.87 Aligned_cols=60 Identities=12% Similarity=-0.027 Sum_probs=30.5
Q ss_pred HhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhch
Q 042815 7 ATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
..+|..+-..|.+.|++++|...|++.....- -+...+..+-..+...|+.++ ..+....
T Consensus 310 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 371 (537)
T 3fp2_A 310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETK 371 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555555555555556666655555554321 123345555555555555555 4444443
No 93
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=93.82 E-value=0.35 Score=26.17 Aligned_cols=62 Identities=11% Similarity=-0.057 Sum_probs=50.0
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
+...|..+-..|.+.|++++|+..|.+..... ..+...|..+-.++...|+++. ..|.....
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 34688889999999999999999999988764 2256688888888999999988 66666554
No 94
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=93.78 E-value=0.33 Score=24.87 Aligned_cols=60 Identities=7% Similarity=-0.127 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCC----HhhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 8 TTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPN----AVTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 8 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd----~~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
..|..+-..|.+.|++++|...|++..... |+ ...+..+-.++...|+.++ ..|+.....
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 366677778888899999999998887653 33 3456666677778888877 777766654
No 95
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=93.70 E-value=0.41 Score=28.59 Aligned_cols=63 Identities=14% Similarity=0.072 Sum_probs=46.5
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
.+...|..+-..|.+.|++++|...|++..... ..+..++..+-..+...|+.++ ..++....
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 152 WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356677888888888888888888888877553 2356677778888888888877 66665554
No 96
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=93.69 E-value=0.21 Score=29.35 Aligned_cols=63 Identities=21% Similarity=0.056 Sum_probs=49.0
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHc------CCCCC-HhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKR------GPRPN-AVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~------g~~pd-~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
....|..+-..|.+.|++++|.++|++.... +-.|+ ..++..+-..+...|+.++ ..++....
T Consensus 152 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 152 VAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4467888899999999999999999998764 22443 3477888888999999988 66666553
No 97
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=93.68 E-value=0.38 Score=25.27 Aligned_cols=58 Identities=10% Similarity=-0.015 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC-CHhhHHHHHHHHcccchhHH--HHHHhch
Q 042815 8 TTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRP-NAVTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 8 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
.+|.-+=..|.+.|++++|++.|.+..+. .| +...|..+=.++.+.|++++ ..++...
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 45555656777888888888888887654 34 45577777777778888777 5554443
No 98
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=93.45 E-value=0.26 Score=26.68 Aligned_cols=61 Identities=2% Similarity=-0.175 Sum_probs=49.5
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC-CHhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRP-NAVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
+...|-.+=..|.+.|++++|++.|++..+.. | +...|..+-.++...|+.++ ..|+....
T Consensus 30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 93 (150)
T 4ga2_A 30 KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEENTDKAVECYRRSVE 93 (150)
T ss_dssp HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 34556677788999999999999999988663 4 66788889999999999988 77776654
No 99
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=93.45 E-value=0.25 Score=28.49 Aligned_cols=62 Identities=13% Similarity=-0.072 Sum_probs=48.6
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHc------CCCC-CHhhHHHHHHHHcccchhHH--HHHHhch
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKR------GPRP-NAVTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~------g~~p-d~~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
...+|+.+-..|...|++++|...|.+.... .-.| ...++..+-..+...|++++ ..++...
T Consensus 84 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 154 (283)
T 3edt_B 84 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL 154 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4568899999999999999999999998754 2223 35578888888999999988 6665554
No 100
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=93.29 E-value=0.45 Score=25.00 Aligned_cols=60 Identities=13% Similarity=0.060 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 8 TTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 8 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
-.|...=..|.+.|++++|++.|.+..+.. .-+...|..+-.++.+.|+.++ ..++....
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 75 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIR 75 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH
Confidence 456666677899999999999999987664 2367788888889999999988 66666554
No 101
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=93.24 E-value=0.37 Score=30.80 Aligned_cols=59 Identities=8% Similarity=-0.012 Sum_probs=44.6
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHH
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMG 64 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~ 64 (87)
.+...|..+-..|.+.|++++|++.|++..... ..+...+..+-.++...|+.++ ..|.
T Consensus 57 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 117 (537)
T 3fp2_A 57 NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLS 117 (537)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 466788888888888888888888888887654 2256677777788888888877 5554
No 102
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=93.22 E-value=0.27 Score=31.83 Aligned_cols=54 Identities=9% Similarity=-0.124 Sum_probs=44.5
Q ss_pred HhHHHHHHHHHHhcCCchhHHHHHHHHHHc-----C-CCCCHh-hHHHHHHHHcccchhHH
Q 042815 7 ATTSSAMMLGLAKNGKNGMGVELFMSIEKR-----G-PRPNAV-TFVGVLTAYGKIKIFGV 60 (87)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-----g-~~pd~~-t~~~ll~~~~~~~~~~~ 60 (87)
..+++.+...|...|++++|+.++++...- | -.|++. +++.+-..|...|+.++
T Consensus 329 ~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~e 389 (429)
T 3qwp_A 329 LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQ 389 (429)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHH
Confidence 368999999999999999999999987632 2 445554 78888899999999887
No 103
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.18 E-value=0.15 Score=27.05 Aligned_cols=59 Identities=7% Similarity=0.027 Sum_probs=43.6
Q ss_pred chhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchhcccccccchhhhhhccc
Q 042815 23 NGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQNLWYYIDGQIDAWQAAC 85 (87)
Q Consensus 23 ~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~~~~~g~~~~~~~~~~~~ 85 (87)
.=+..+-++.+-...+.|+.....+.|+||-+..++.. ++++..+.+ ..+...+|..++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K----~~~~~~iY~~~l 86 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK----AGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----TTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----hcCchhhHHHHH
Confidence 34556666777777899999999999999999998888 888888876 333344555544
No 104
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=93.13 E-value=0.34 Score=32.01 Aligned_cols=54 Identities=6% Similarity=-0.218 Sum_probs=44.5
Q ss_pred HhHHHHHHHHHHhcCCchhHHHHHHHHHHc-----C-CCCCHh-hHHHHHHHHcccchhHH
Q 042815 7 ATTSSAMMLGLAKNGKNGMGVELFMSIEKR-----G-PRPNAV-TFVGVLTAYGKIKIFGV 60 (87)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-----g-~~pd~~-t~~~ll~~~~~~~~~~~ 60 (87)
..++|.|...|...|++++|+.++++..+- | -.|++. +++.+-..|...|+.++
T Consensus 351 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~e 411 (490)
T 3n71_A 351 LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEV 411 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHH
Confidence 368999999999999999999999997632 2 345544 88899999999999988
No 105
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=93.12 E-value=0.37 Score=25.33 Aligned_cols=64 Identities=13% Similarity=0.029 Sum_probs=43.5
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcC--CCCC----HhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRG--PRPN----AVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~pd----~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
.+...|+.+=..|.+.|++++|++.|++..+.. ..++ ..+|..+=.++...|+++. ..|+....
T Consensus 40 ~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 40 SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 467889999999999999999999999977532 1111 1234444445556666766 66666554
No 106
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=93.03 E-value=0.55 Score=26.71 Aligned_cols=54 Identities=11% Similarity=0.009 Sum_probs=36.1
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHcCCCC-CHhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 13 MMLGLAKNGKNGMGVELFMSIEKRGPRP-NAVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 13 li~~~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
+-..|.+.|++++|+..|++..+.. | +...+..+-..+...|+.++ ..|++...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA--PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666777777777777777766553 3 45566666667777777766 56665543
No 107
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.79 E-value=0.68 Score=27.77 Aligned_cols=60 Identities=7% Similarity=-0.163 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHh------hHHHHHHHHcccchhHH--HHHHhch
Q 042815 8 TTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAV------TFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 8 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~------t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
.+|+.+-..|.+.|++++|+..|++........... .|..+-.++...|+.+. ..|+...
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 468888899999999999999999988654332221 45666667777888877 6666654
No 108
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=92.77 E-value=0.56 Score=27.12 Aligned_cols=60 Identities=12% Similarity=0.103 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 8 TTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 8 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
.+|..+-..|.+.|++++|+..|++..... .-+...+..+-..+...|+.++ ..++....
T Consensus 75 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 136 (272)
T 3u4t_A 75 ADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR 136 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 347888888899999999999999887653 2245678888888888888887 67766654
No 109
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=92.70 E-value=0.92 Score=29.47 Aligned_cols=63 Identities=3% Similarity=-0.079 Sum_probs=48.2
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCH--hhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNA--VTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~--~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
.+...|..+...+.+.|++++|..+|++..+. .|+. ..|........+.|.++. .+|......
T Consensus 319 ~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 319 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 35778899999999999999999999998864 5542 477777777777777777 677666543
No 110
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=92.70 E-value=0.66 Score=25.29 Aligned_cols=30 Identities=0% Similarity=-0.156 Sum_probs=16.9
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEK 35 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 35 (87)
+...|..+-..|...|++++|...|++...
T Consensus 43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 72 (177)
T 2e2e_A 43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQ 72 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555566666666666655543
No 111
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=92.41 E-value=0.57 Score=24.36 Aligned_cols=58 Identities=9% Similarity=0.043 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC-CHhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 9 TSSAMMLGLAKNGKNGMGVELFMSIEKRGPRP-NAVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 9 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
.|-.+-..+.+.|++++|+..|++.... .| +...|..+=.++...|+.++ ..+++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 79 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARM 79 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555667789999999999999998876 34 56677777788888899888 77776654
No 112
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=92.36 E-value=0.76 Score=28.37 Aligned_cols=51 Identities=10% Similarity=-0.071 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH
Q 042815 9 TSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV 60 (87)
Q Consensus 9 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~ 60 (87)
.|..+-..|.+.|++++|+..|++..... ..+...+..+-.++...|++++
T Consensus 198 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~ 248 (336)
T 1p5q_A 198 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFEL 248 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 44444444555555555555555544332 1133344444444444444444
No 113
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=92.32 E-value=0.47 Score=23.21 Aligned_cols=52 Identities=12% Similarity=0.079 Sum_probs=33.5
Q ss_pred HHHHhcCCchhHHHHHHHHHHcCCCC-CHh-hHHHHHHHHcccchhHH--HHHHhchh
Q 042815 15 LGLAKNGKNGMGVELFMSIEKRGPRP-NAV-TFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 15 ~~~~~~g~~~~a~~l~~~m~~~g~~p-d~~-t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
..+.+.|++++|...|++..+.. | +.. .+..+-.++...|+.++ ..|+....
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34667778888888888776553 3 334 56666666667777766 55655543
No 114
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=92.20 E-value=0.85 Score=25.44 Aligned_cols=60 Identities=8% Similarity=-0.035 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 8 TTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 8 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
..|..+-..|.+.|++++|+..|++..... ..+...+..+-.++...|+.+. ..|+....
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 678888888999999999999999987663 2356677777788888888887 66666553
No 115
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=92.12 E-value=0.97 Score=27.94 Aligned_cols=59 Identities=7% Similarity=-0.059 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 9 TSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 9 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
.|+.+-..|.+.|++++|+..|++..... .-+...|..+-.++...|+++. ..|+....
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 78888889999999999999999987653 2256788888889999999988 67776653
No 116
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=92.01 E-value=0.98 Score=29.06 Aligned_cols=62 Identities=6% Similarity=-0.119 Sum_probs=48.2
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
.+...|.++-..+...|++++|...+++....+ |+...|..+=..+.-.|+.++ ..+++...
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 456677777666777899999999999999886 787777676677778899888 66655543
No 117
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=91.99 E-value=0.92 Score=27.98 Aligned_cols=63 Identities=10% Similarity=-0.058 Sum_probs=50.3
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC-CHhhHHHHHHHHcccchhHH---HHHHhchhc
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRP-NAVTFVGVLTAYGKIKIFGV---TLMGIQPQN 69 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~---~~~~~m~~~ 69 (87)
.+...|..+-..|.+.|++++|+..|++..+.. | +...+..+-.++.+.|+.++ ..+..|..+
T Consensus 228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467789999999999999999999999988663 4 56677788888888888876 566666543
No 118
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=91.97 E-value=0.76 Score=24.34 Aligned_cols=62 Identities=11% Similarity=0.042 Sum_probs=48.8
Q ss_pred HhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 7 ATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
...|..+-..|.+.|++++|...|.+..... ..+...+..+-..+...|+.++ ..+......
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 76 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 76 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567888888999999999999999987653 2256678888888888898888 666666543
No 119
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=91.89 E-value=0.92 Score=29.55 Aligned_cols=63 Identities=6% Similarity=-0.070 Sum_probs=48.4
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
.+..+|+.+-..|.+.|++++|++.|++..+.. .-+...+..+-.++...|+.++ ..+++...
T Consensus 38 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 102 (477)
T 1wao_1 38 SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALRDYETVVK 102 (477)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356788888889999999999999999987653 1255677778888888888887 66666554
No 120
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=91.85 E-value=1.1 Score=29.34 Aligned_cols=52 Identities=4% Similarity=-0.138 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH
Q 042815 8 TTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV 60 (87)
Q Consensus 8 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~ 60 (87)
..|..+-..|.+.|++++|.+.|++..+.. .-+...+..+-.++.+.|+.++
T Consensus 58 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~ 109 (568)
T 2vsy_A 58 EAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEA 109 (568)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 344444444444444444444444443321 1123334444444444444443
No 121
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=91.81 E-value=0.62 Score=30.18 Aligned_cols=63 Identities=13% Similarity=-0.081 Sum_probs=52.6
Q ss_pred CcHhHHHHHHHHHHhcCCc-hhHHHHHHHHHHcCCCC-CHhhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 5 RDATTSSAMMLGLAKNGKN-GMGVELFMSIEKRGPRP-NAVTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~-~~a~~l~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
.+...|..+-..|...|++ ++|++.|++..+.. | +...|..+-.++...|++++ ..|+.....
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 166 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH 166 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4667888888899999999 99999999988764 4 46788999999999999988 777777654
No 122
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=91.77 E-value=1 Score=26.93 Aligned_cols=59 Identities=5% Similarity=-0.150 Sum_probs=35.1
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC-CHhhHHHHHHHHcccchhHH--HHHHhc
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRP-NAVTFVGVLTAYGKIKIFGV--TLMGIQ 66 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~--~~~~~m 66 (87)
+...|..+-..|.+.|++++|...|++..+. .| +...+..+-.++...|+.++ ..|...
T Consensus 37 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 37 VAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQLEMESYDEAIANLQRA 98 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4556666666666777777777777665533 33 34455556666666666665 444443
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=91.46 E-value=1.4 Score=26.37 Aligned_cols=61 Identities=15% Similarity=-0.014 Sum_probs=49.8
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC-CHhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRP-NAVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
+...|..+-..|.+.|++++|+..|.+.... .| +...|..+-.++.+.|++++ ..++....
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 66 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALE 66 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 5567888888999999999999999998866 34 66788888888889999988 66666554
No 124
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.15 E-value=1.5 Score=27.90 Aligned_cols=70 Identities=10% Similarity=-0.099 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchhc--ccccccchhhh
Q 042815 10 SSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQN--LWYYIDGQIDA 80 (87)
Q Consensus 10 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~~--~~~g~~~~~~~ 80 (87)
...++..+...|+.+++...+....... .-+...+..+|.++...|+..+ ..|+..... ...|++|+..+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3456777888999999998888876553 2377799999999999998877 555554332 11578887654
No 125
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=91.13 E-value=1.1 Score=28.08 Aligned_cols=65 Identities=6% Similarity=-0.092 Sum_probs=49.3
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC-CHhhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRP-NAVTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
++..++..+-..|...|++++|++++.+-...|-.+ +...+...+..+.+.|+++. ..++.|...
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 445555677788899999999999999875544212 55578888889999999988 888887643
No 126
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=90.87 E-value=1 Score=31.16 Aligned_cols=59 Identities=10% Similarity=-0.017 Sum_probs=32.8
Q ss_pred HhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC-CHhhHHHHHHHHcccchhHH--HHHHhch
Q 042815 7 ATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRP-NAVTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
..+|+.|=..|.+.|++++|++.|++..+. .| +...+..+=.++.+.|+.++ ..|++..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al 70 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 70 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445666666666666666666666665543 23 23455555555666666655 4444443
No 127
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=90.63 E-value=1.3 Score=27.88 Aligned_cols=61 Identities=8% Similarity=-0.005 Sum_probs=49.0
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC-CHhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRP-NAVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
+...|+.+-..|.+.|++++|++.|++..+. .| +...+..+-.++...|+.++ ..++....
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4567888889999999999999999998764 45 56678888888889999888 66666554
No 128
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=90.58 E-value=0.96 Score=22.98 Aligned_cols=56 Identities=20% Similarity=0.194 Sum_probs=42.0
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHcCCCCCH----hhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 12 AMMLGLAKNGKNGMGVELFMSIEKRGPRPNA----VTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 12 ~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~----~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
.+-..+.+.|++++|...|++..... |+. ..+..+-.++...|+.++ ..|+.....
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~ 68 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR 68 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34566788999999999999988653 333 366667777888899888 777776654
No 129
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=90.53 E-value=0.42 Score=26.74 Aligned_cols=56 Identities=7% Similarity=0.066 Sum_probs=41.7
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchhcccccccchhhhhhccc
Q 042815 26 GVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQNLWYYIDGQIDAWQAAC 85 (87)
Q Consensus 26 a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~~~~~g~~~~~~~~~~~~ 85 (87)
..+-++.+....+.|+.....+.|++|-+..++.. ++++..+.+ ..+....|..++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K----~~~~~~iY~y~l 129 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK----AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----TTTCTTHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh----cCCchhhHHHHH
Confidence 33444455567799999999999999999999988 999988876 334455565544
No 130
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=90.52 E-value=0.77 Score=22.61 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=29.9
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCH
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNA 42 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~ 42 (87)
.+...|..+-..|.+.|++++|++.|++.... .|+.
T Consensus 36 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~ 71 (111)
T 2l6j_A 36 QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTA 71 (111)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSST
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCc
Confidence 36678888999999999999999999998754 5553
No 131
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=90.38 E-value=1.3 Score=26.52 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=35.7
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC-CHhhHHHHHHHHcccchhHH
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRP-NAVTFVGVLTAYGKIKIFGV 60 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~ 60 (87)
|...+..+-..|.+.|++++|++.|.+.....-.. +...+..+...+...|+.+.
T Consensus 218 ~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 218 DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 45566777777777777777777777777653221 24466666666666666554
No 132
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=90.34 E-value=1.7 Score=25.29 Aligned_cols=63 Identities=16% Similarity=0.087 Sum_probs=48.4
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCC----HhhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPN----AVTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd----~~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
.+...+-..-..+.+.|++++|...|++..... |+ ...+..+-.++.+.|+.+. ..|+.....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 81 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI 81 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 455666677778899999999999999998653 43 4566677778888899888 777777654
No 133
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=90.01 E-value=1.4 Score=23.92 Aligned_cols=63 Identities=5% Similarity=-0.099 Sum_probs=47.7
Q ss_pred cHhHHHHHHHH-HHhcCCc--hhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 6 DATTSSAMMLG-LAKNGKN--GMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 6 ~~~~~~~li~~-~~~~g~~--~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
+...|..+-.. |.+.|++ ++|...|++.....- -+...+..+-..+...|+.+. ..+......
T Consensus 77 ~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 77 NAELYAALATVLYYQASQHMTAQTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 55667777777 7789998 999999999887641 245677777788888898888 677766543
No 134
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=89.99 E-value=1.4 Score=28.96 Aligned_cols=63 Identities=8% Similarity=-0.073 Sum_probs=51.3
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC-CHhhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRP-NAVTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
.+...|..+-..|.+.|++++|.+.|++..+. .| +...+..+-..+...|+.++ ..+++....
T Consensus 21 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 86 (568)
T 2vsy_A 21 QDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA 86 (568)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 35678899999999999999999999998765 44 56688888888999999988 777766543
No 135
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=89.71 E-value=0.75 Score=27.46 Aligned_cols=59 Identities=19% Similarity=0.039 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHHHH----c-CCCCCHh-hHHHHHHHHcccchhHH--HHHHhc
Q 042815 8 TTSSAMMLGLAKNGKNGMGVELFMSIEK----R-GPRPNAV-TFVGVLTAYGKIKIFGV--TLMGIQ 66 (87)
Q Consensus 8 ~~~~~li~~~~~~g~~~~a~~l~~~m~~----~-g~~pd~~-t~~~ll~~~~~~~~~~~--~~~~~m 66 (87)
.+|+.+-..|.+.|++++|+..|++..+ . +..|... ++..+-..|.+.|+.++ ..++..
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a 222 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3689999999999999999999999873 1 2233333 77888888889999888 555443
No 136
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=89.52 E-value=1.1 Score=28.42 Aligned_cols=27 Identities=7% Similarity=-0.101 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHHH
Q 042815 8 TTSSAMMLGLAKNGKNGMGVELFMSIE 34 (87)
Q Consensus 8 ~~~~~li~~~~~~g~~~~a~~l~~~m~ 34 (87)
..|+.+-..|.+.|++++|+..|++..
T Consensus 167 ~a~~~~g~~~~~~g~~~eAl~~~~kal 193 (382)
T 2h6f_A 167 QVWHHRRVLVEWLRDPSQELEFIADIL 193 (382)
T ss_dssp HHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 137
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=89.43 E-value=1 Score=28.14 Aligned_cols=62 Identities=8% Similarity=-0.024 Sum_probs=44.4
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC-----CHhhHHHHHHHHccc--c--hhHH--HHHHhchhc
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRP-----NAVTFVGVLTAYGKI--K--IFGV--TLMGIQPQN 69 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-----d~~t~~~ll~~~~~~--~--~~~~--~~~~~m~~~ 69 (87)
+...+-.++..|.+.|+.+.|.+.+++|.+. .| +..+..-+..++... | +... .+|+++..+
T Consensus 135 ~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~ 207 (310)
T 3mv2_B 135 TTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT 207 (310)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 5567778888899999999999999998765 56 356666666663332 2 5555 888887655
No 138
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=88.94 E-value=2.1 Score=29.72 Aligned_cols=23 Identities=13% Similarity=-0.013 Sum_probs=9.0
Q ss_pred HHHHHHHHHhcCCchhHHHHHHH
Q 042815 10 SSAMMLGLAKNGKNGMGVELFMS 32 (87)
Q Consensus 10 ~~~li~~~~~~g~~~~a~~l~~~ 32 (87)
|+.+=..|.+.|++++|++.|++
T Consensus 80 ~~nLg~~l~~~g~~~~A~~~~~k 102 (723)
T 4gyw_A 80 YSNMGNTLKEMQDVQGALQCYTR 102 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33333333333444444444333
No 139
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=88.81 E-value=2.1 Score=24.41 Aligned_cols=63 Identities=13% Similarity=0.087 Sum_probs=44.9
Q ss_pred HhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCC-CC-HhhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 7 ATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPR-PN-AVTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~-pd-~~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
...+-.+-..+.+.|++++|...|+++....-. |. ...+..+-.++-+.|+.++ ..|+.....
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 70 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 70 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 344555666788899999999999998865321 21 2456667778888888888 777776654
No 140
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=88.75 E-value=1.1 Score=21.12 Aligned_cols=32 Identities=13% Similarity=0.096 Sum_probs=27.8
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHc
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKR 36 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 36 (87)
.+...|..+-..|.+.|++++|...|++....
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 41 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35677888889999999999999999998765
No 141
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.68 E-value=0.96 Score=28.85 Aligned_cols=41 Identities=5% Similarity=0.098 Sum_probs=34.8
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHH-----cCCCCCHhhHH
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEK-----RGPRPNAVTFV 46 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-----~g~~pd~~t~~ 46 (87)
+...|-.+|.+|.+.|+..+|++.|++... .|+.|...+-.
T Consensus 204 ~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 204 REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 556899999999999999999999999754 49999877543
No 142
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=88.33 E-value=4 Score=28.18 Aligned_cols=77 Identities=10% Similarity=-0.044 Sum_probs=56.3
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccch---hHH--HHHHhchhcccccccchhh
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKI---FGV--TLMGIQPQNLWYYIDGQID 79 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~---~~~--~~~~~m~~~~~~g~~~~~~ 79 (87)
.|..+|..+|..+.+.+.++++..+|+++... ......-|.-.+..-.+.+. ++. .+|++.... ....|++.
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~--~~~~~sv~ 140 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSK--ELGNNDLS 140 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCS--SSCCCCHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHh--cCCCCCHH
Confidence 47889999999999999999999999999865 23345567777777777777 766 888888865 11136666
Q ss_pred hhhcc
Q 042815 80 AWQAA 84 (87)
Q Consensus 80 ~~~~~ 84 (87)
.|..-
T Consensus 141 LW~~Y 145 (679)
T 4e6h_A 141 LWLSY 145 (679)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 143
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=88.29 E-value=2.6 Score=27.20 Aligned_cols=60 Identities=10% Similarity=-0.148 Sum_probs=38.7
Q ss_pred HhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhch
Q 042815 7 ATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
...|+.+-..|.+.|++++|+..|++..... .-+...|..+-.++...|++++ ..|+...
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al 378 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVL 378 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4566677777777777777777777766543 1245566666666667777666 5555544
No 144
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=87.69 E-value=1.4 Score=24.12 Aligned_cols=63 Identities=6% Similarity=-0.058 Sum_probs=45.4
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHc----CCCC-CHhhHHHHHHHHcccchhHH--HHHHhch
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKR----GPRP-NAVTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p-d~~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
.....|+.+-..|...|++++|...|++.... +..| ....+..+-..+...|++++ ..++...
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 93 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEER 93 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45678888989999999999999999997651 2222 33466666777778888887 5555433
No 145
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=87.56 E-value=2.1 Score=26.35 Aligned_cols=60 Identities=8% Similarity=-0.066 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHHHHc----CCCC-CHhhHHHHHHHHcccchhHH--HHHHhch
Q 042815 8 TTSSAMMLGLAKNGKNGMGVELFMSIEKR----GPRP-NAVTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 8 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p-d~~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
.+|+.+=..|.+.|++++|...|++.... +-.| ...++..+-..+.+.|+.++ ..++...
T Consensus 225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 47788888899999999999999987652 3323 34477778888888888877 5555443
No 146
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=87.51 E-value=2.3 Score=24.84 Aligned_cols=58 Identities=16% Similarity=0.154 Sum_probs=40.9
Q ss_pred HhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCC-----HhhHHHHHHHHcccchhHH--HHHHhc
Q 042815 7 ATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPN-----AVTFVGVLTAYGKIKIFGV--TLMGIQ 66 (87)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd-----~~t~~~ll~~~~~~~~~~~--~~~~~m 66 (87)
...+...-..+.+.|++++|..+|++..... |+ ...+..+-..+...|+++. ..++..
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 69 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD 69 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445555566788899999999999988763 33 3566677777888888877 555543
No 147
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=87.44 E-value=3.3 Score=26.02 Aligned_cols=60 Identities=15% Similarity=0.073 Sum_probs=45.0
Q ss_pred HhHHHHHHHHHHhcCCchhHHHHHHHHHHc-------CCCC-CHhhHHHHHHHHcccchhHH--HHHHhc
Q 042815 7 ATTSSAMMLGLAKNGKNGMGVELFMSIEKR-------GPRP-NAVTFVGVLTAYGKIKIFGV--TLMGIQ 66 (87)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-------g~~p-d~~t~~~ll~~~~~~~~~~~--~~~~~m 66 (87)
...||.|=..|...|++++|++.|++-.+- ...| ...+|..+-..+...|+.++ ..++..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka 120 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKV 120 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 457888888889999999999999885431 1233 34688888889999999888 555443
No 148
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=87.24 E-value=2.6 Score=23.72 Aligned_cols=61 Identities=7% Similarity=-0.175 Sum_probs=46.1
Q ss_pred HhHHHHHHHHHHhcCCchhHHHHHHHHHHc-----CCCCCHh-hH----HHHHHHHcccchhHH--HHHHhch
Q 042815 7 ATTSSAMMLGLAKNGKNGMGVELFMSIEKR-----GPRPNAV-TF----VGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-----g~~pd~~-t~----~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
...|+.+=.++.+.|++++|+..|++-... .+.||-. .| ...=.++...|+.++ ..|+...
T Consensus 57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 348999999999999999999999998764 2367543 66 666677778888887 5555443
No 149
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=86.97 E-value=2.8 Score=24.94 Aligned_cols=58 Identities=5% Similarity=-0.102 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHcCCC-CC----HhhHHHHHHHHcccchhHH--HHHHhch
Q 042815 10 SSAMMLGLAKNGKNGMGVELFMSIEKRGPR-PN----AVTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 10 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~-pd----~~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
+..+...|...|++++|+..|++....... +| ..+++.+-..+...|+.++ ..|+...
T Consensus 118 ~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334666666778899999999998763322 23 2257788888888888887 6666555
No 150
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=86.89 E-value=1.1 Score=23.15 Aligned_cols=61 Identities=8% Similarity=-0.120 Sum_probs=40.3
Q ss_pred HhHHHHHHHHHHhcCCchhHHHHHHHHHHcCC-CCC----HhhHHHHHHHHcccchhHH--HHHHhch
Q 042815 7 ATTSSAMMLGLAKNGKNGMGVELFMSIEKRGP-RPN----AVTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~pd----~~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
..+|..+-..|...|++++|...|++.....- .++ ..++..+-..+...|+.++ ..++...
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34677777888889999999999988764311 111 1356666667777787777 5555443
No 151
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=86.88 E-value=3.7 Score=24.95 Aligned_cols=60 Identities=15% Similarity=0.148 Sum_probs=44.4
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCC-----HhhHHHHHHHHcccchhHH--HHHHhc
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPN-----AVTFVGVLTAYGKIKIFGV--TLMGIQ 66 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd-----~~t~~~ll~~~~~~~~~~~--~~~~~m 66 (87)
.....+...=..+.+.|++++|..+|++..... |+ ...+..+-..+...|+++. ..++..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 73 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD 73 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 455666677778889999999999999988763 33 2467777778888888877 555543
No 152
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=86.83 E-value=2.8 Score=27.04 Aligned_cols=63 Identities=8% Similarity=-0.088 Sum_probs=45.5
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC-CHhhHHHHHHHHcccchhHH---HHHHhchhc
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRP-NAVTFVGVLTAYGKIKIFGV---TLMGIQPQN 69 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~---~~~~~m~~~ 69 (87)
.+...|..+-.+|.+.|++++|+..|++..+. .| +...+..+-.++.+.++.++ ..+..|..+
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46778889999999999999999999998754 45 44577777777777777765 566666543
No 153
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=86.71 E-value=4.2 Score=25.47 Aligned_cols=73 Identities=5% Similarity=-0.132 Sum_probs=53.6
Q ss_pred HhHHHHHHHHHHh-----cCCchhHHHHHHHHHHcCCCC--CHhhHHHHHHHHccc-chhHH--HHHHhchhccccccc-
Q 042815 7 ATTSSAMMLGLAK-----NGKNGMGVELFMSIEKRGPRP--NAVTFVGVLTAYGKI-KIFGV--TLMGIQPQNLWYYID- 75 (87)
Q Consensus 7 ~~~~~~li~~~~~-----~g~~~~a~~l~~~m~~~g~~p--d~~t~~~ll~~~~~~-~~~~~--~~~~~m~~~~~~g~~- 75 (87)
-..|..+-.-|.+ -|+.++|.+.|++-.+- .| +..++...-+.++.. ++.+. ..+++.... ...
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a---~p~~ 273 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI---DPES 273 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC---CGGG
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC---CCCC
Confidence 4688999999999 49999999999997765 45 356777778888874 77666 777776654 343
Q ss_pred -chhhhhhcc
Q 042815 76 -GQIDAWQAA 84 (87)
Q Consensus 76 -~~~~~~~~~ 84 (87)
|+....|..
T Consensus 274 ~P~~~lan~~ 283 (301)
T 3u64_A 274 VPHNKLLVIL 283 (301)
T ss_dssp CSSCHHHHHH
T ss_pred CCChhHHHHH
Confidence 666655543
No 154
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=86.67 E-value=2 Score=21.74 Aligned_cols=47 Identities=17% Similarity=0.219 Sum_probs=33.2
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcC-CCCCHhhHHHHHHHH
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRG-PRPNAVTFVGVLTAY 52 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~pd~~t~~~ll~~~ 52 (87)
+...|..+-..|.+.|++++|+..|++..... -.|+...|...+..+
T Consensus 60 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 60 HQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFY 107 (117)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 56778889999999999999999999987542 233333444444333
No 155
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=86.54 E-value=3 Score=24.78 Aligned_cols=61 Identities=16% Similarity=0.024 Sum_probs=45.8
Q ss_pred HhHHHHHHHHHHhcCCchhHHHHHHHHHHc-CCCCC-----HhhHHHHHHHHcccchhHH--HHHHhch
Q 042815 7 ATTSSAMMLGLAKNGKNGMGVELFMSIEKR-GPRPN-----AVTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~pd-----~~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
..+|+.+-..|.+.|++++|...|++.... ...|+ ..++..+-..|.+.|+.++ ..++...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 348899999999999999999999997621 11222 2578888888999999988 5555543
No 156
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=86.33 E-value=2.1 Score=22.11 Aligned_cols=60 Identities=10% Similarity=-0.036 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHHHHcC----CCCC-HhhHHHHHHHHcccchhHH--HHHHhch
Q 042815 8 TTSSAMMLGLAKNGKNGMGVELFMSIEKRG----PRPN-AVTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 8 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g----~~pd-~~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
.++..+-..|...|++++|.+.|++..... -.+. ...+..+-..+...|+.++ ..++...
T Consensus 50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 478888888999999999999999976431 1111 3356666667777888877 5554443
No 157
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=86.25 E-value=1.3 Score=20.94 Aligned_cols=34 Identities=9% Similarity=0.130 Sum_probs=27.0
Q ss_pred chhHHHHHHHHHHcCCCCCHhhHHHHHHHH-cccc
Q 042815 23 NGMGVELFMSIEKRGPRPNAVTFVGVLTAY-GKIK 56 (87)
Q Consensus 23 ~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~-~~~~ 56 (87)
.++|.+.|.+|+...-.+...||.-.++.+ ++..
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DP 36 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDP 36 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCC
Confidence 478999999999665566778999999998 5543
No 158
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=86.20 E-value=3.4 Score=23.99 Aligned_cols=14 Identities=0% Similarity=0.041 Sum_probs=5.5
Q ss_pred cCCchhHHHHHHHH
Q 042815 20 NGKNGMGVELFMSI 33 (87)
Q Consensus 20 ~g~~~~a~~l~~~m 33 (87)
.|++++|...|++.
T Consensus 55 ~~~~~~A~~~~~~a 68 (273)
T 1ouv_A 55 EKNLKKAASFYAKA 68 (273)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 33333333333333
No 159
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=86.15 E-value=2.4 Score=25.55 Aligned_cols=61 Identities=7% Similarity=-0.100 Sum_probs=39.3
Q ss_pred HhHHHHHHHHHHhcCCchhHHHHHHHHHHc----CCCCCHh-hHHHHHHHHcccchhHH--HHHHhch
Q 042815 7 ATTSSAMMLGLAKNGKNGMGVELFMSIEKR----GPRPNAV-TFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~pd~~-t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
..+|+.+-..|.+.|++++|+..|++.... +..++.. .+..+..++...|+.+. ..|+...
T Consensus 155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 356777788888889999999988887642 2222222 45555555666677766 5565554
No 160
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=86.13 E-value=3 Score=26.45 Aligned_cols=51 Identities=6% Similarity=-0.051 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC-CHhhHHHHHHHHcccch-hHH
Q 042815 8 TTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRP-NAVTFVGVLTAYGKIKI-FGV 60 (87)
Q Consensus 8 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~ll~~~~~~~~-~~~ 60 (87)
..|+.+-..+.+.|++++|++.|++.... .| +...|..+-..+...|+ +++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~e 150 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHE 150 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHH
Confidence 34444444555555555555555554433 22 23344444444444453 444
No 161
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=85.49 E-value=3.8 Score=23.81 Aligned_cols=57 Identities=5% Similarity=-0.074 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHh----cCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcc----cchhHH--HHHHhch
Q 042815 8 TTSSAMMLGLAK----NGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGK----IKIFGV--TLMGIQP 67 (87)
Q Consensus 8 ~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~----~~~~~~--~~~~~m~ 67 (87)
.+|..+-..|.+ .|++++|+..|++..+.+ +...+..+-..+.. .++.++ ..|+...
T Consensus 75 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~ 141 (273)
T 1ouv_A 75 NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC 141 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 344455555555 566666666666655443 33444444444444 444444 4444433
No 162
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=85.07 E-value=4.4 Score=24.20 Aligned_cols=59 Identities=7% Similarity=-0.034 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC-CHhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 8 TTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRP-NAVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 8 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
-.+-.+-..+.+.|++++|...|++.... .| +...+..+-..+...|+.++ ..++....
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 34455566678889999999999988765 34 45577777788888888887 66766654
No 163
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=84.95 E-value=1.9 Score=23.61 Aligned_cols=62 Identities=8% Similarity=-0.061 Sum_probs=41.2
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHc----CCCC--CHhhHHHHHHHHcccchhHH--HHHHhch
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKR----GPRP--NAVTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p--d~~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
...+++.+-..|...|++++|.+.|.+.... +-.| ....+..+-..+...|++++ ..++...
T Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 65 EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3457777888888999999999999886643 2122 12346666666777788777 5554443
No 164
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=84.70 E-value=2.6 Score=26.01 Aligned_cols=60 Identities=15% Similarity=0.094 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHHHHc----CCCCCHhhHHHHHHHHcccchhHH--HHHHhch
Q 042815 8 TTSSAMMLGLAKNGKNGMGVELFMSIEKR----GPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 8 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
.+++.+=..|.+.|++++|.+.|.+.... +-.....++..+-..+.+.|+.++ ..++...
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 288 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGL 288 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 46677777788888888888888887651 212234566777777778888777 5555443
No 165
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=84.67 E-value=2.2 Score=21.11 Aligned_cols=30 Identities=3% Similarity=-0.102 Sum_probs=26.5
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEK 35 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 35 (87)
+...|..+-..|.+.|++++|.+.|++...
T Consensus 40 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 40 YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 556889999999999999999999998764
No 166
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=83.79 E-value=2.1 Score=26.02 Aligned_cols=54 Identities=7% Similarity=-0.038 Sum_probs=33.0
Q ss_pred HhHHHHHHHHHHhcCCchhHHHHHHHHHHc----CCCCC-HhhHHHHHHHHcccchhHH
Q 042815 7 ATTSSAMMLGLAKNGKNGMGVELFMSIEKR----GPRPN-AVTFVGVLTAYGKIKIFGV 60 (87)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~pd-~~t~~~ll~~~~~~~~~~~ 60 (87)
..+|..+-..|.+.|++++|...|++.... +-.+. ..++..+-..+...|+.++
T Consensus 267 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 267 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 346667777777777777777777776532 11111 3355566666666676666
No 167
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=83.75 E-value=1.8 Score=25.36 Aligned_cols=25 Identities=0% Similarity=-0.073 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHH
Q 042815 9 TSSAMMLGLAKNGKNGMGVELFMSI 33 (87)
Q Consensus 9 ~~~~li~~~~~~g~~~~a~~l~~~m 33 (87)
++..+-..|.+.|++++|...|++.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a 289 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKH 289 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3444444444455555555544443
No 168
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=83.65 E-value=5.4 Score=24.58 Aligned_cols=61 Identities=7% Similarity=-0.150 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHh--hHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 9 TSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAV--TFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 9 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~--t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
.+..+=.++.+.|++++|+..|++.......|... .....--++.+.|+.++ .+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 45555566888889999999888876433325422 33444455667777777 778777654
No 169
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=83.27 E-value=3.5 Score=28.07 Aligned_cols=62 Identities=6% Similarity=-0.183 Sum_probs=44.8
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
+...|..+-..|.+.|++++|++.|++..+.. .-+...|..+=.++...|++++ ..|++...
T Consensus 432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 495 (681)
T 2pzi_A 432 SVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLD 495 (681)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45677777788888899999999988887653 1245566666677778888877 66666554
No 170
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=82.59 E-value=5.4 Score=24.46 Aligned_cols=58 Identities=14% Similarity=0.104 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCC-H----hhHHHHHHHHcccchhHH--HHHHhch
Q 042815 8 TTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPN-A----VTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 8 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd-~----~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
..+..+-..+.+.|++++|..+|++..+.+ |+ . ..+..+-..+...|+.+. ..++...
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 113 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL 113 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344555667888999999999999988763 33 2 367777777888888877 5555443
No 171
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=81.65 E-value=4 Score=25.64 Aligned_cols=54 Identities=11% Similarity=0.025 Sum_probs=39.6
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC-CHhhHHHHHHHHcccchhHH
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRP-NAVTFVGVLTAYGKIKIFGV 60 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~ 60 (87)
.+...|..+-.+|.+.|++++|+..|++..+. .| +...+..+-..+...++.++
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999999998765 34 44455555555555555443
No 172
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=81.08 E-value=5.2 Score=22.11 Aligned_cols=62 Identities=10% Similarity=-0.087 Sum_probs=44.8
Q ss_pred HhHHHHHHHHHHhcCCchhHHHHHHHHHHcCC-CCC--------------HhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 7 ATTSSAMMLGLAKNGKNGMGVELFMSIEKRGP-RPN--------------AVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~pd--------------~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
...|..+-..|.+.|++++|...|.+.....- .|+ ...+..+-.++...|+.++ ..+.....
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34567777788899999999999999875421 121 2577777778888888887 66665554
No 173
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=80.61 E-value=3.8 Score=20.46 Aligned_cols=32 Identities=9% Similarity=-0.098 Sum_probs=27.4
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHc
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKR 36 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 36 (87)
.+...|..+-..|.+.|++++|...|++....
T Consensus 51 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 51 TYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35678888999999999999999999997653
No 174
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=80.31 E-value=2.4 Score=26.10 Aligned_cols=60 Identities=10% Similarity=-0.021 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHHHHcC--CC---CCHhhHHHHHHHHcccchhHH--HHHHhch
Q 042815 8 TTSSAMMLGLAKNGKNGMGVELFMSIEKRG--PR---PNAVTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 8 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~---pd~~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
..|..+-..|.+.|++++|...|++..... .. ....++..+-..+...|+.++ ..++...
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 264 RANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 367778888888888888888888765431 11 114466677777777787777 5555443
No 175
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=80.23 E-value=4.2 Score=24.25 Aligned_cols=63 Identities=5% Similarity=-0.107 Sum_probs=46.6
Q ss_pred HhHHHHHHHHHHhc-CCchhHHHHHHHHHHcC--C-CC-C-HhhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 7 ATTSSAMMLGLAKN-GKNGMGVELFMSIEKRG--P-RP-N-AVTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 7 ~~~~~~li~~~~~~-g~~~~a~~l~~~m~~~g--~-~p-d-~~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
..+|+.+-..|.+. |++++|+..|++..... . .+ . ..++..+-..+...|+.++ ..|+.....
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 187 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS 187 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34788888889986 99999999999976431 1 11 1 3467788888899999988 777776653
No 176
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=79.86 E-value=2 Score=23.50 Aligned_cols=28 Identities=18% Similarity=0.115 Sum_probs=15.9
Q ss_pred HhHHHHHHHHHHhcCCchhHHHHHHHHH
Q 042815 7 ATTSSAMMLGLAKNGKNGMGVELFMSIE 34 (87)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~a~~l~~~m~ 34 (87)
...|..+-..|.+.|++++|...|++..
T Consensus 40 ~~a~~~la~~~~~~g~~~~A~~~~~~a~ 67 (176)
T 2r5s_A 40 GDVKLAKADCLLETKQFELAQELLATIP 67 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhh
Confidence 3455555555566666666666665543
No 177
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=78.91 E-value=3.2 Score=24.68 Aligned_cols=53 Identities=4% Similarity=-0.135 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHHHHcC----CCCC-HhhHHHHHHHHcccchhHH
Q 042815 8 TTSSAMMLGLAKNGKNGMGVELFMSIEKRG----PRPN-AVTFVGVLTAYGKIKIFGV 60 (87)
Q Consensus 8 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g----~~pd-~~t~~~ll~~~~~~~~~~~ 60 (87)
.+|+.+-..|.+.|++++|+..|++..... ..+. ..+|..+-..+.+.|+.++
T Consensus 197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~ 254 (293)
T 2qfc_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEA 254 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHH
Confidence 588899999999999999999999876432 1111 4466666667777776654
No 178
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=78.49 E-value=4.9 Score=26.57 Aligned_cols=50 Identities=6% Similarity=-0.070 Sum_probs=37.3
Q ss_pred HHHhcCCchhHHHHHHHHHHc-----C-CCCCH-hhHHHHHHHHcccchhHH--HHHHh
Q 042815 16 GLAKNGKNGMGVELFMSIEKR-----G-PRPNA-VTFVGVLTAYGKIKIFGV--TLMGI 65 (87)
Q Consensus 16 ~~~~~g~~~~a~~l~~~m~~~-----g-~~pd~-~t~~~ll~~~~~~~~~~~--~~~~~ 65 (87)
.+-..|++++|+.++++..+. | -.|++ .+++.+...|...|++++ .++++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~ 376 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARR 376 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 456789999999999987642 1 23444 389999999999999988 44444
No 179
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=78.31 E-value=4.1 Score=26.35 Aligned_cols=54 Identities=7% Similarity=-0.115 Sum_probs=39.7
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHc--C-CCC---C-HhhHHHHHHHHcccchhHH--HHHHh
Q 042815 12 AMMLGLAKNGKNGMGVELFMSIEKR--G-PRP---N-AVTFVGVLTAYGKIKIFGV--TLMGI 65 (87)
Q Consensus 12 ~li~~~~~~g~~~~a~~l~~~m~~~--g-~~p---d-~~t~~~ll~~~~~~~~~~~--~~~~~ 65 (87)
..+..+.+.|++++|+.++++..+. . +.| + ..+++.+...|...|++++ .++++
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~ 354 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTR 354 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 3456677889999999999998743 1 222 2 3388899999999999988 44443
No 180
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=78.04 E-value=4.1 Score=24.49 Aligned_cols=59 Identities=7% Similarity=-0.113 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHHHHc----CCCC-CHhhHHHHHHHHcccchhHH--HHHHhch
Q 042815 8 TTSSAMMLGLAKNGKNGMGVELFMSIEKR----GPRP-NAVTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 8 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p-d~~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
.+|+.+-..|.+ |++++|++.|++.... |-.+ -..++..+-..+...|+.++ ..|++..
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456666666766 8888888888776532 1111 13456666677777777777 5555544
No 181
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=77.23 E-value=4.8 Score=19.56 Aligned_cols=37 Identities=8% Similarity=0.088 Sum_probs=27.7
Q ss_pred CchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchh
Q 042815 22 KNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIF 58 (87)
Q Consensus 22 ~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~ 58 (87)
..++|.+.|.+|+...-.....||.-.+..+....++
T Consensus 13 t~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~~DpRY 49 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRY 49 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHTSGGG
T ss_pred CHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCccc
Confidence 3589999999999554344567899999988765544
No 182
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=77.09 E-value=6.6 Score=30.13 Aligned_cols=25 Identities=8% Similarity=0.031 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHH
Q 042815 8 TTSSAMMLGLAKNGKNGMGVELFMS 32 (87)
Q Consensus 8 ~~~~~li~~~~~~g~~~~a~~l~~~ 32 (87)
..|.-++..|.+.|++++|.+.|..
T Consensus 1135 say~eVa~~~~~lGkyEEAIeyL~m 1159 (1630)
T 1xi4_A 1135 SSYMEVVQAANTSGNWEELVKYLQM 1159 (1630)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444455555555555554443
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=76.91 E-value=5.8 Score=25.80 Aligned_cols=58 Identities=12% Similarity=-0.053 Sum_probs=39.1
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCC-HhhHHHHHHH--HcccchhHH--HHHH
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPN-AVTFVGVLTA--YGKIKIFGV--TLMG 64 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd-~~t~~~ll~~--~~~~~~~~~--~~~~ 64 (87)
.+...|..+-..|.+.|++++|++.|++..+.. |+ ...+..+-.+ +.+.|+.++ ..++
T Consensus 72 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 72 KYIKGYYRRAASNMALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 466789999999999999999999999987653 32 2334333333 566677666 5444
No 184
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=76.88 E-value=1.6 Score=26.78 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHH
Q 042815 9 TSSAMMLGLAKNGKNGMGVELFMSIEK 35 (87)
Q Consensus 9 ~~~~li~~~~~~g~~~~a~~l~~~m~~ 35 (87)
.=|.|+..|..+|+.+.|.++|++++.
T Consensus 36 ~~n~l~R~FL~~gkl~AAr~l~~rlp~ 62 (270)
T 3cqc_A 36 QGNAIMRKFLASKKHEAAKEVFVKIPQ 62 (270)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHCCh
Confidence 458999999999999999999998653
No 185
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.78 E-value=8.8 Score=23.73 Aligned_cols=60 Identities=8% Similarity=0.048 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHHHHc--CC--CCC-HhhHHHHHHHHcccchhHH--HHHHhch
Q 042815 8 TTSSAMMLGLAKNGKNGMGVELFMSIEKR--GP--RPN-AVTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 8 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~--g~--~pd-~~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
.++..+...|...|++++|..++++.... +. +|. ..++..+...|...|+++. ..+....
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 136 SLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 46778889999999999999999987643 21 222 3478888889999999887 5554433
No 186
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=75.78 E-value=1.6 Score=23.21 Aligned_cols=48 Identities=6% Similarity=0.121 Sum_probs=31.6
Q ss_pred HHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 15 LGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 15 ~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
..+.+.|+|++|..+.+.+. .||...|-++-.. +.|.-++ ..+.++..
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 45678899999998877654 8999999766443 3444444 33334443
No 187
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=75.36 E-value=7.4 Score=20.77 Aligned_cols=49 Identities=16% Similarity=0.121 Sum_probs=39.4
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH
Q 042815 12 AMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV 60 (87)
Q Consensus 12 ~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~ 60 (87)
.++..+...+..-.|.++++.+.+.+...+..|.--.|+.+...|.+..
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 63 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDT 63 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEE
Confidence 4666677777788999999999988777788888788888888887755
No 188
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=75.30 E-value=9.5 Score=21.96 Aligned_cols=63 Identities=8% Similarity=-0.074 Sum_probs=45.1
Q ss_pred HhHHHHHHHHHHhcCCchhHHHHHHHHHHcCC-CCC-HhhHHHHHHHHcc--------cchhHH--HHHHhchhc
Q 042815 7 ATTSSAMMLGLAKNGKNGMGVELFMSIEKRGP-RPN-AVTFVGVLTAYGK--------IKIFGV--TLMGIQPQN 69 (87)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~pd-~~t~~~ll~~~~~--------~~~~~~--~~~~~m~~~ 69 (87)
...|..+-..|.+.|++++|...|++.....- .|+ ...+..+-.++.. .|+.+. ..|+.....
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 45777888889999999999999999987631 222 2344455555555 788887 777777654
No 189
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=75.24 E-value=8.8 Score=21.54 Aligned_cols=50 Identities=10% Similarity=0.003 Sum_probs=37.5
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC-CHhhHHHHHHHHcccc
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRP-NAVTFVGVLTAYGKIK 56 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~ll~~~~~~~ 56 (87)
.+...|..+-..|.+.|++++|+..|++..+. .| +...+..+-..+...|
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHh
Confidence 46778999999999999999999999998876 34 4445655555544433
No 190
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=74.51 E-value=6.6 Score=22.07 Aligned_cols=72 Identities=11% Similarity=0.019 Sum_probs=47.4
Q ss_pred cHhHHHHHHHHHHhcCC----------chhHHHHHHHHHHcCCCC-CHhhHHHHHHHHcccc-----------hhHH--H
Q 042815 6 DATTSSAMMLGLAKNGK----------NGMGVELFMSIEKRGPRP-NAVTFVGVLTAYGKIK-----------IFGV--T 61 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~----------~~~a~~l~~~m~~~g~~p-d~~t~~~ll~~~~~~~-----------~~~~--~ 61 (87)
|...|+.+=..+.+.|+ +++|+..|++..+. .| +...|..+=.+|...| ++++ .
T Consensus 35 ~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~ 112 (158)
T 1zu2_A 35 DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQ 112 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHH
Confidence 55666666666666655 45999999997765 45 4457777777777765 5665 6
Q ss_pred HHHhchhcccccccchhhhhhcc
Q 042815 62 LMGIQPQNLWYYIDGQIDAWQAA 84 (87)
Q Consensus 62 ~~~~m~~~~~~g~~~~~~~~~~~ 84 (87)
.|++... +.|+...|...
T Consensus 113 ~~~kAl~-----l~P~~~~y~~a 130 (158)
T 1zu2_A 113 FFQQAVD-----EQPDNTHYLKS 130 (158)
T ss_dssp HHHHHHH-----HCTTCHHHHHH
T ss_pred HHHHHHH-----hCCCCHHHHHH
Confidence 6666653 46766666443
No 191
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=74.38 E-value=6.7 Score=21.26 Aligned_cols=49 Identities=16% Similarity=0.120 Sum_probs=38.6
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH
Q 042815 12 AMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV 60 (87)
Q Consensus 12 ~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~ 60 (87)
.++..+...+..-.|.++++++.+.+...+..|.=-.|+.+.+.|.+..
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 66 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDV 66 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 4666677777788899999999988777788877777888888777654
No 192
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=74.24 E-value=3.3 Score=23.20 Aligned_cols=31 Identities=6% Similarity=0.066 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCC
Q 042815 9 TSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPN 41 (87)
Q Consensus 9 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd 41 (87)
.+=-+=-+|.+.|++++|.+.++...+. .|+
T Consensus 73 ~lY~LAv~~~kl~~Y~~A~~y~~~lL~i--eP~ 103 (152)
T 1pc2_A 73 YVFYLAVGNYRLKEYEKALKYVRGLLQT--EPQ 103 (152)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhc--CCC
Confidence 3444556789999999999999998865 553
No 193
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=74.03 E-value=8 Score=20.50 Aligned_cols=47 Identities=9% Similarity=0.159 Sum_probs=35.3
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAY 52 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~ 52 (87)
|+.....+.+.+|.+-.++..|.++|.-.+..- .+...+|.-+++-.
T Consensus 43 P~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lqEl 89 (109)
T 1v54_E 43 PEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQEL 89 (109)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHHH
Confidence 555677899999999999999999999987432 33345677666543
No 194
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=73.60 E-value=3.9 Score=23.65 Aligned_cols=24 Identities=13% Similarity=0.039 Sum_probs=21.6
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHH
Q 042815 12 AMMLGLAKNGKNGMGVELFMSIEK 35 (87)
Q Consensus 12 ~li~~~~~~g~~~~a~~l~~~m~~ 35 (87)
.+|.|+.+-|++++|.++..++..
T Consensus 37 qvI~GLlql~~ydea~~yI~~~~~ 60 (192)
T 1ixm_A 37 QLIKGNLSLQKYDRVFEMIEEMVI 60 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 589999999999999999988763
No 195
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=73.56 E-value=4.4 Score=18.96 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=18.9
Q ss_pred cCCchhHHHHHHHHHHcC-CCCCHh
Q 042815 20 NGKNGMGVELFMSIEKRG-PRPNAV 43 (87)
Q Consensus 20 ~g~~~~a~~l~~~m~~~g-~~pd~~ 43 (87)
..++++|...|.++...| |.|+.+
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 678999999999998665 555543
No 196
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=73.14 E-value=13 Score=23.66 Aligned_cols=57 Identities=9% Similarity=0.119 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCC----HhhHHHHHHHHcccchhHH---HHHHhchhc
Q 042815 9 TSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPN----AVTFVGVLTAYGKIKIFGV---TLMGIQPQN 69 (87)
Q Consensus 9 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd----~~t~~~ll~~~~~~~~~~~---~~~~~m~~~ 69 (87)
.-.++|.-|...|+.++|.+.++++. .|+ .+.+..+..++-+...-++ .++..+...
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~----~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~ 77 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMR----APKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQE 77 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT----CCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC----CchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHC
Confidence 45789999999999999999999986 353 3344445555544433333 666666554
No 197
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=72.63 E-value=9.1 Score=20.57 Aligned_cols=60 Identities=5% Similarity=0.020 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccc-hh-HH--HHHHhchhc
Q 042815 9 TSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIK-IF-GV--TLMGIQPQN 69 (87)
Q Consensus 9 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~-~~-~~--~~~~~m~~~ 69 (87)
..+.+|.-|...|+.++|.+.++++..-... ..+....+..+.-+.+ .- +. .++..+...
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~ 72 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKS 72 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHC
Confidence 4578999999999999999999998622211 3334445555555543 21 22 555555443
No 198
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=72.07 E-value=10 Score=23.29 Aligned_cols=60 Identities=12% Similarity=-0.006 Sum_probs=44.7
Q ss_pred HhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHh------------------hHHHHHHHHcccchhHH--HHHHhc
Q 042815 7 ATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAV------------------TFVGVLTAYGKIKIFGV--TLMGIQ 66 (87)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~------------------t~~~ll~~~~~~~~~~~--~~~~~m 66 (87)
...|..+-..|.+.|++++|...|.+.... .|+.. .|..+-.++.+.|++++ ..+...
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345667777788899999999999997654 35443 67777778888888887 666665
Q ss_pred hh
Q 042815 67 PQ 68 (87)
Q Consensus 67 ~~ 68 (87)
..
T Consensus 257 l~ 258 (338)
T 2if4_A 257 LT 258 (338)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 199
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=71.97 E-value=7.7 Score=19.41 Aligned_cols=46 Identities=7% Similarity=-0.109 Sum_probs=31.1
Q ss_pred chhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH-------HHHHhchh
Q 042815 23 NGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV-------TLMGIQPQ 68 (87)
Q Consensus 23 ~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~-------~~~~~m~~ 68 (87)
.++|...|.+|+...-.+...||.-.+..+...-.+.. .+|+....
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~~tWe~~~~~i~~DpRY~aL~~~eRK~~F~~y~~ 68 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLNPKERKQVFDQYVK 68 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSSSCHHHHHHHHHTCSGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCCccccCCHHHHHHHHHHHHH
Confidence 58899999999955434455789888888776544322 56665543
No 200
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=71.42 E-value=12 Score=21.25 Aligned_cols=62 Identities=18% Similarity=0.002 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchhccccccc
Q 042815 10 SSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQNLWYYID 75 (87)
Q Consensus 10 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~~~~~g~~ 75 (87)
.+.-++...+.|+-++-.+++.++.. ...|+.....-+-.||.+.|..++ ++..+..++ |+.
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k---G~k 157 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK---GEK 157 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCH
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh---hhH
Confidence 34456667778888888888888643 447788888899999999999988 888887776 664
No 201
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=71.25 E-value=10 Score=20.66 Aligned_cols=49 Identities=12% Similarity=0.172 Sum_probs=32.6
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH
Q 042815 12 AMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV 60 (87)
Q Consensus 12 ~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~ 60 (87)
.++..+...+..-.|.++++.+.+.+...+..|.--.|+.+...|.+..
T Consensus 26 ~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 74 (145)
T 2fe3_A 26 AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKE 74 (145)
T ss_dssp HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEE
Confidence 3455555556666788888888777656666666666777776666543
No 202
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=71.23 E-value=4.6 Score=21.93 Aligned_cols=25 Identities=4% Similarity=0.041 Sum_probs=21.5
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHc
Q 042815 12 AMMLGLAKNGKNGMGVELFMSIEKR 36 (87)
Q Consensus 12 ~li~~~~~~g~~~~a~~l~~~m~~~ 36 (87)
-|--|+.+.|++++|.+.++.+.+.
T Consensus 79 ~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 79 YLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3556899999999999999998865
No 203
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=71.02 E-value=9.9 Score=23.31 Aligned_cols=62 Identities=5% Similarity=-0.092 Sum_probs=44.5
Q ss_pred HhHHHHHHHHHHhcCCchhHHHHHHHHHHc----CCCC-CHhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 7 ATTSSAMMLGLAKNGKNGMGVELFMSIEKR----GPRP-NAVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p-d~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
..+++.+-..|...|++++|+..|.+.... +-.+ ...++..+=..+...|+.++ ..++....
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 457888888999999999999999997643 1111 12367777778888888887 55555443
No 204
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=70.88 E-value=8.7 Score=20.63 Aligned_cols=49 Identities=12% Similarity=0.165 Sum_probs=35.4
Q ss_pred HHHHHHHhcC-CchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH
Q 042815 12 AMMLGLAKNG-KNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV 60 (87)
Q Consensus 12 ~li~~~~~~g-~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~ 60 (87)
.++..+...+ ..-.|.++++.+.+.+...+..|.---|+.+.+.|.+..
T Consensus 22 ~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 71 (136)
T 1mzb_A 22 KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVR 71 (136)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 4566666665 677899999999888766777777777777777776654
No 205
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=70.45 E-value=10 Score=20.76 Aligned_cols=49 Identities=16% Similarity=0.176 Sum_probs=33.0
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH
Q 042815 12 AMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV 60 (87)
Q Consensus 12 ~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~ 60 (87)
.++..+...+..-.|.++++.+.+.+...+..|.--.|+.+...|.+..
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 79 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISV 79 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEE
Confidence 4555566666667788888888777666666666666677766666543
No 206
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=70.29 E-value=1.1 Score=28.19 Aligned_cols=28 Identities=11% Similarity=-0.207 Sum_probs=9.0
Q ss_pred HhHHHHHHHHHHhcCCchhHHHHHHHHH
Q 042815 7 ATTSSAMMLGLAKNGKNGMGVELFMSIE 34 (87)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~a~~l~~~m~ 34 (87)
..+|+.+=..|.+.|++++|++.|++-.
T Consensus 430 ~~~~~~LG~~~~~~g~~~~A~~~y~kAL 457 (472)
T 4g1t_A 430 SEALHVLAFLQELNEKMQQADEDSERGL 457 (472)
T ss_dssp TTHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555445555555555555555544
No 207
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=69.90 E-value=8.4 Score=23.66 Aligned_cols=62 Identities=3% Similarity=-0.046 Sum_probs=44.0
Q ss_pred HhHHHHHHHHHHhcCCchhHHHHHHHHHHc----CCCC-CHhhHHHHHHHHcccchhHH--HHHHhchh
Q 042815 7 ATTSSAMMLGLAKNGKNGMGVELFMSIEKR----GPRP-NAVTFVGVLTAYGKIKIFGV--TLMGIQPQ 68 (87)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p-d~~t~~~ll~~~~~~~~~~~--~~~~~m~~ 68 (87)
..+++.+=..|...|++++|.+.|.+.... +-.+ ...++..+=..+...|+.++ ..+.....
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 457888888999999999999999987642 2111 12356667777778888877 55555543
No 208
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=68.73 E-value=9.3 Score=19.08 Aligned_cols=61 Identities=5% Similarity=-0.258 Sum_probs=42.1
Q ss_pred HhHHHHHHHHHHhcCCchhHHHHHHHHHHcC------CCCCHhhHHHHHHHHcccchhHH--HHHHhch
Q 042815 7 ATTSSAMMLGLAKNGKNGMGVELFMSIEKRG------PRPNAVTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g------~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
..-+-.|=..+.+.|++++|...|++..+.- -.+....+..+-.++.+.|+++. ..++...
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3445566677888899999999888866431 12345577777888888888877 5555554
No 209
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=68.07 E-value=11 Score=19.87 Aligned_cols=44 Identities=9% Similarity=-0.042 Sum_probs=33.6
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHh-hHHHHHH
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAV-TFVGVLT 50 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~-t~~~ll~ 50 (87)
.+...|..+-..|...|++++|...|.+.... .|+.. .....+.
T Consensus 95 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~l~ 139 (162)
T 3rkv_A 95 TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAASVVAREMK 139 (162)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCHHHHHHHHH
Confidence 46678889999999999999999999998765 56544 4433333
No 210
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=67.11 E-value=10 Score=21.28 Aligned_cols=52 Identities=8% Similarity=0.121 Sum_probs=39.7
Q ss_pred cHhHHHHHHHHHHhcC-----------CchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhH
Q 042815 6 DATTSSAMMLGLAKNG-----------KNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFG 59 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g-----------~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~ 59 (87)
+...|+.+=.+|.+.| ++++|++.|++..+. .|+-..|.-.++.+-+...+.
T Consensus 79 ~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~~ka~el~ 141 (158)
T 1zu2_A 79 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMTAKAPQLH 141 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTHHHHH
T ss_pred cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHhCHhcc
Confidence 5567888888888764 899999999997755 788888877777666654443
No 211
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=66.98 E-value=15 Score=20.65 Aligned_cols=59 Identities=10% Similarity=0.026 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHcCCC-C-----C-----HhhHHHHHHHHcccchhHH--HHHHhch
Q 042815 9 TSSAMMLGLAKNGKNGMGVELFMSIEKRGPR-P-----N-----AVTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 9 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~-p-----d-----~~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
.+...=..+.+.|++++|+..|++.....-. | + ...|...=.++.+.|++++ ..++...
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL 84 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL 84 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4455556678899999999999997754322 1 1 2378888888889999888 5554443
No 212
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=66.88 E-value=14 Score=20.49 Aligned_cols=45 Identities=4% Similarity=0.067 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcc
Q 042815 9 TSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGK 54 (87)
Q Consensus 9 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~ 54 (87)
..+.+|.-|...|+.++|.+.++++..-... ..+....+..+.-+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~ 55 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLES 55 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcC
Confidence 4678999999999999999999998622111 23344445555554
No 213
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=66.72 E-value=15 Score=20.74 Aligned_cols=29 Identities=7% Similarity=0.025 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHHHHc
Q 042815 8 TTSSAMMLGLAKNGKNGMGVELFMSIEKR 36 (87)
Q Consensus 8 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 36 (87)
..+..+-..|.+.|++++|+..|++..+.
T Consensus 42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 70 (225)
T 2yhc_A 42 QVQLDLIYAYYKNADLPLAQAAIDRFIRL 70 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 46777888999999999999999998865
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=65.79 E-value=9.6 Score=18.15 Aligned_cols=32 Identities=13% Similarity=-0.032 Sum_probs=27.5
Q ss_pred cHh-HHHHHHHHHHhcCCchhHHHHHHHHHHcC
Q 042815 6 DAT-TSSAMMLGLAKNGKNGMGVELFMSIEKRG 37 (87)
Q Consensus 6 ~~~-~~~~li~~~~~~g~~~~a~~l~~~m~~~g 37 (87)
+.. .|..+-..|.+.|++++|.+.|++.....
T Consensus 33 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 33 GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 455 78888889999999999999999988663
No 215
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.25 E-value=16 Score=22.51 Aligned_cols=53 Identities=8% Similarity=0.130 Sum_probs=37.4
Q ss_pred HHHHhcCCchhHHHHHHHHHHcCCC-CCH---------------hhHHHHHHHHcccchhHH--HHHHhch
Q 042815 15 LGLAKNGKNGMGVELFMSIEKRGPR-PNA---------------VTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 15 ~~~~~~g~~~~a~~l~~~m~~~g~~-pd~---------------~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
..+.+.|++++|++.|.+..+..-. .+. ..+..+...|...|+.++ ..+....
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3467889999999999998764322 111 136778888889998887 5555544
No 216
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=64.90 E-value=19 Score=27.78 Aligned_cols=54 Identities=7% Similarity=0.169 Sum_probs=45.4
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHh
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGI 65 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~ 65 (87)
+..+|..+=.++.+.|++++|.+.|.+- -|...|.-+..+|.+.|++++ +.+..
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~m 1159 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 1159 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3468999999999999999999999663 477888999999999999988 55543
No 217
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=64.30 E-value=15 Score=20.75 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=28.4
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCC
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPR 39 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 39 (87)
+..-.-.+-.+|.+-|+..+|-+++.+..+.|++
T Consensus 124 ~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 124 SASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred ChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 3444556778999999999999999999999975
No 218
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=62.89 E-value=12 Score=20.59 Aligned_cols=49 Identities=16% Similarity=0.164 Sum_probs=35.5
Q ss_pred HHHHHHHhcC-CchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH
Q 042815 12 AMMLGLAKNG-KNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV 60 (87)
Q Consensus 12 ~li~~~~~~g-~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~ 60 (87)
.++..+...+ ..-.|.++++.+.+.+...+..|.---|+.+...|.+..
T Consensus 21 ~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 21 KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 3555555555 567789999999888766677777777777777776654
No 219
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=62.77 E-value=18 Score=20.25 Aligned_cols=46 Identities=9% Similarity=0.161 Sum_probs=35.3
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTA 51 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~ 51 (87)
|+.....+-+.+|-+-.++..|.++|+-.+.. +.+...+|.-+++-
T Consensus 86 PeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqE 131 (152)
T 2y69_E 86 PEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 131 (152)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHH
Confidence 55567789999999999999999999998743 23445567766654
No 220
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=61.74 E-value=14 Score=25.21 Aligned_cols=17 Identities=12% Similarity=-0.220 Sum_probs=6.8
Q ss_pred hHHHHHHHHcccchhHH
Q 042815 44 TFVGVLTAYGKIKIFGV 60 (87)
Q Consensus 44 t~~~ll~~~~~~~~~~~ 60 (87)
.|..+-.++.+.|+.++
T Consensus 536 a~~~lg~~~~~~g~~~~ 552 (681)
T 2pzi_A 536 AAFGLARARSAEGDRVG 552 (681)
T ss_dssp HHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCCHHH
Confidence 33333334444444443
No 221
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=61.51 E-value=12 Score=17.90 Aligned_cols=46 Identities=15% Similarity=0.201 Sum_probs=23.1
Q ss_pred HHHHHHhcC-CchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchh
Q 042815 13 MMLGLAKNG-KNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIF 58 (87)
Q Consensus 13 li~~~~~~g-~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~ 58 (87)
++..+.+.+ ..-.+.++++.+.+.+...+..|.--.|+.+.+.|.+
T Consensus 22 IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 22 ILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 344444332 3445556666665554444555555555555555444
No 222
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=61.01 E-value=20 Score=20.16 Aligned_cols=46 Identities=7% Similarity=-0.042 Sum_probs=27.4
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcc
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGK 54 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~ 54 (87)
|..++..+=..|.+.+++++|...|++..+.| +...+..+=..+..
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~ 62 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR 62 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc
Confidence 44556666666667777777777777776655 33334444444444
No 223
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=60.86 E-value=8.5 Score=17.96 Aligned_cols=20 Identities=10% Similarity=0.396 Sum_probs=8.4
Q ss_pred CCchhHHHHHHHHHHcCCCC
Q 042815 21 GKNGMGVELFMSIEKRGPRP 40 (87)
Q Consensus 21 g~~~~a~~l~~~m~~~g~~p 40 (87)
|+++.|...+-+|...+.+|
T Consensus 37 gdvd~aI~~LL~m~~~~~~~ 56 (59)
T 1wgl_A 37 GNKDAAINSLLQMGEEPSGP 56 (59)
T ss_dssp TCHHHHHHHHHHSSCCCCSC
T ss_pred CCHHHHHHHHHcCcCCCCCC
Confidence 44444444444444333333
No 224
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=60.43 E-value=14 Score=24.01 Aligned_cols=27 Identities=4% Similarity=-0.176 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHHH
Q 042815 8 TTSSAMMLGLAKNGKNGMGVELFMSIE 34 (87)
Q Consensus 8 ~~~~~li~~~~~~g~~~~a~~l~~~m~ 34 (87)
.++|.|=..|...|++++|+.+|++-.
T Consensus 383 ~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 383 SMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 689999999999999999999999865
No 225
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=60.05 E-value=14 Score=20.07 Aligned_cols=48 Identities=8% Similarity=0.085 Sum_probs=33.6
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH
Q 042815 12 AMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV 60 (87)
Q Consensus 12 ~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~ 60 (87)
.++..+.+.+ .-.|.++++++.+.+...+..|.=--|+.+.+.|.+..
T Consensus 23 ~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 70 (145)
T 3eyy_A 23 LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSH 70 (145)
T ss_dssp HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEE
Confidence 3455555556 66889999999887766677776666777777766644
No 226
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=59.91 E-value=19 Score=21.75 Aligned_cols=59 Identities=7% Similarity=-0.271 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHc----CCC--CC-HhhHHHHHHHHcccchhHH--HHHHhch
Q 042815 9 TSSAMMLGLAKNGKNGMGVELFMSIEKR----GPR--PN-AVTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 9 ~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~--pd-~~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
+++.+-..|...|++++|...|++.... +-. |. ...+..+-..+...|++++ ..++...
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 162 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 162 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3556667788899999999999987643 221 32 2355556667778888887 5555443
No 227
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=57.67 E-value=20 Score=22.13 Aligned_cols=31 Identities=3% Similarity=0.004 Sum_probs=22.5
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEK 35 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 35 (87)
++...+..+...|.+.|+.++|.++|+.+.+
T Consensus 256 ~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 256 TSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 3556677777777777888888888877653
No 228
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=57.46 E-value=16 Score=18.06 Aligned_cols=63 Identities=13% Similarity=-0.114 Sum_probs=40.9
Q ss_pred CcHhHHHHHHHHHHhcCC---chhHHHHHHHHHHcCCCCC-HhhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 5 RDATTSSAMMLGLAKNGK---NGMGVELFMSIEKRGPRPN-AVTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~---~~~a~~l~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
.|...|..+-.++...++ .++|..+|++..+. .|+ ......+=..+.+.|+.++ ..|+.+...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345555555555544433 68888888887765 444 3455555566677788877 778887755
No 229
>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A
Probab=57.26 E-value=9.9 Score=20.09 Aligned_cols=34 Identities=21% Similarity=0.131 Sum_probs=28.0
Q ss_pred CcHhHHHHHHHHHHhcCCc---hhHHHHHHHHHHcCC
Q 042815 5 RDATTSSAMMLGLAKNGKN---GMGVELFMSIEKRGP 38 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~---~~a~~l~~~m~~~g~ 38 (87)
|+.++=+.|+..+.+++.. ++|..+-+.+.+.|+
T Consensus 35 ~~cF~GselVdWLi~~~~~~~R~EAv~lgq~Ll~~G~ 71 (109)
T 1uhw_A 35 NHCLTGSGVIDWLVSNKLVRNRQEGLMISASLLSEGY 71 (109)
T ss_dssp EEECCHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHTS
T ss_pred cccccchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCe
Confidence 5566777888889998855 899999999999984
No 230
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=56.22 E-value=18 Score=20.10 Aligned_cols=45 Identities=13% Similarity=0.145 Sum_probs=20.6
Q ss_pred HHHHHhcCCchhHHHHHHHHHHc--CCCCCHhhHHHHHHHHcccchh
Q 042815 14 MLGLAKNGKNGMGVELFMSIEKR--GPRPNAVTFVGVLTAYGKIKIF 58 (87)
Q Consensus 14 i~~~~~~g~~~~a~~l~~~m~~~--g~~pd~~t~~~ll~~~~~~~~~ 58 (87)
+..+.+.+..-.|.++++.+.+. +...+..|.=--|+.+.+.|.+
T Consensus 39 L~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 39 LKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 33344444445555555555544 4333444443444444444443
No 231
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=56.07 E-value=4.7 Score=18.78 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=17.2
Q ss_pred cCCchhHHHHHHHHHHcCCCCCHh
Q 042815 20 NGKNGMGVELFMSIEKRGPRPNAV 43 (87)
Q Consensus 20 ~g~~~~a~~l~~~m~~~g~~pd~~ 43 (87)
..++++|...|.+. +..|.|+..
T Consensus 32 ~Wd~~~A~~~F~~~-~~~IP~eAF 54 (57)
T 2jp7_A 32 NWNYEVAIKGFQSS-MNGIPREAF 54 (57)
T ss_dssp TTCSHHHHHHHHHS-TTTSCHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHh
Confidence 57899999999996 445666554
No 232
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=54.94 E-value=28 Score=24.07 Aligned_cols=60 Identities=7% Similarity=-0.045 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHc-C-CCCCHhhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 9 TSSAMMLGLAKNGKNGMGVELFMSIEKR-G-PRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 9 ~~~~li~~~~~~g~~~~a~~l~~~m~~~-g-~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
.|-..+....+.|..+.|..+|.+..+. + ..+......+.+.-.+. ++.+. .+|+...+.
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~-~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS-KDTKTACKVLELGLKY 499 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHH
Confidence 5777777667777888888888887654 2 33444444444443331 22333 666666554
No 233
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=54.39 E-value=19 Score=17.96 Aligned_cols=27 Identities=7% Similarity=-0.142 Sum_probs=11.8
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHH
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFM 31 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~ 31 (87)
|++-||+-+...+-+..-..+++.+.+
T Consensus 34 pgVnTW~qI~el~qkk~i~~~~m~iik 60 (81)
T 2ko4_A 34 PNINTWQQVTALAQQKLLTPQDMEAAK 60 (81)
T ss_dssp TTTCBHHHHHHHHTTTSSCHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCCCHHHHHHHH
Confidence 455555555443333333344444333
No 234
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=54.04 E-value=34 Score=20.66 Aligned_cols=60 Identities=5% Similarity=-0.238 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHHHHcCCC--C--CHhhHHHHHHHHcccchhHH--HHHHhch
Q 042815 8 TTSSAMMLGLAKNGKNGMGVELFMSIEKRGPR--P--NAVTFVGVLTAYGKIKIFGV--TLMGIQP 67 (87)
Q Consensus 8 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~--p--d~~t~~~ll~~~~~~~~~~~--~~~~~m~ 67 (87)
..+..+-..|...|++++|...+++.....-. | ...++..+-..+...|+.++ ..++...
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666777889999999999999997654221 2 12356666677777888877 5555543
No 235
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=53.75 E-value=28 Score=19.56 Aligned_cols=26 Identities=12% Similarity=0.240 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHH
Q 042815 9 TSSAMMLGLAKNGKNGMGVELFMSIE 34 (87)
Q Consensus 9 ~~~~li~~~~~~g~~~~a~~l~~~m~ 34 (87)
...++|.-|...|+.++|...++++.
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 45788999999999999999999986
No 236
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.43 E-value=18 Score=23.34 Aligned_cols=52 Identities=4% Similarity=-0.234 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCC--HhhHHHHHHHHcccchhHH
Q 042815 9 TSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPN--AVTFVGVLTAYGKIKIFGV 60 (87)
Q Consensus 9 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd--~~t~~~ll~~~~~~~~~~~ 60 (87)
++..+-.-|.+.|++++|.+.|.++......+. ...+-.+++.+...++...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~ 186 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLY 186 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHH
Confidence 344566778999999999999999986543333 3356667777777676665
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=51.91 E-value=12 Score=26.45 Aligned_cols=29 Identities=7% Similarity=-0.109 Sum_probs=27.3
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHH
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIE 34 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 34 (87)
+..+|-.|...|.+.|++|.|+-.++.++
T Consensus 370 eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 370 SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 57899999999999999999999999986
No 238
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=50.57 E-value=29 Score=22.19 Aligned_cols=60 Identities=5% Similarity=0.013 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchh--HH--HHHHhchhc
Q 042815 9 TSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIF--GV--TLMGIQPQN 69 (87)
Q Consensus 9 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~--~~--~~~~~m~~~ 69 (87)
..+.+|.-|...|+.++|.+.++++..-... ..+....+..+.-+.+.- +. .++..+...
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~ 282 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKS 282 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC
Confidence 4578999999999999999999998632222 233344444444443221 22 555555544
No 239
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=49.86 E-value=23 Score=20.74 Aligned_cols=44 Identities=11% Similarity=-0.122 Sum_probs=36.5
Q ss_pred HHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH
Q 042815 17 LAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV 60 (87)
Q Consensus 17 ~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~ 60 (87)
..-.|+-+.+.+++++....|..|.......++.+.-+.|..-+
T Consensus 12 al~~~d~~~~~~~~~~al~~g~~~~~ii~~~l~p~m~~VG~lw~ 55 (215)
T 3ezx_A 12 AIVNQNVAGTPELCKEALAAGVPALDIITKGLSVGMKIVGDKFE 55 (215)
T ss_dssp HHHTTCTTHHHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 44568999999999999999998888888888888888776543
No 240
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=49.64 E-value=12 Score=25.64 Aligned_cols=48 Identities=4% Similarity=0.041 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhH
Q 042815 10 SSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFG 59 (87)
Q Consensus 10 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~ 59 (87)
---++.-|++.|..+.|.++++.|-..-+. +...+ ..|..++++|+++
T Consensus 519 ~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~ 566 (570)
T 3f3f_C 519 IEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYE 566 (570)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHC------------------------
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChh
Confidence 344667777778788888887777544332 33444 5566677777665
No 241
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=49.60 E-value=27 Score=19.43 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=21.8
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHcCCCCC
Q 042815 13 MMLGLAKNGKNGMGVELFMSIEKRGPRPN 41 (87)
Q Consensus 13 li~~~~~~g~~~~a~~l~~~m~~~g~~pd 41 (87)
|--||.+.|++++|.+..+.+.+. .|+
T Consensus 83 LAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 83 LTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 456899999999999999888755 553
No 242
>1fsh_A Dishevelled-1; three-helix bundle, beta-ARM, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31
Probab=48.23 E-value=28 Score=18.02 Aligned_cols=34 Identities=15% Similarity=0.028 Sum_probs=27.9
Q ss_pred CcHhHHHHHHHHHHhcCC----chhHHHHHHHHHHcCC
Q 042815 5 RDATTSSAMMLGLAKNGK----NGMGVELFMSIEKRGP 38 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~----~~~a~~l~~~m~~~g~ 38 (87)
|+..+=+.++.-+.+++. -++|..+-+.|.+.|+
T Consensus 48 ~~~F~G~dlVdWL~~~~~~~~~r~eAv~lg~~Ll~~G~ 85 (105)
T 1fsh_A 48 ANAVIGADVVDWLYTHVEGFKERREARKYASSMLKHGF 85 (105)
T ss_dssp SSCCHHHHHHHHHHHHCCCCSSHHHHHHHHHHHHHTTT
T ss_pred CceeEcHHHHHHHHHhCcCCCCHHHHHHHHHHHHHCCc
Confidence 667777888888888863 3899999999999885
No 243
>1v3f_A Pleckstrin 2; three-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: a.4.5.31
Probab=47.06 E-value=26 Score=18.61 Aligned_cols=34 Identities=12% Similarity=-0.030 Sum_probs=27.6
Q ss_pred CcHhHHHHHHHHHHhcCCc---hhHHHHHHHHHHcCC
Q 042815 5 RDATTSSAMMLGLAKNGKN---GMGVELFMSIEKRGP 38 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~---~~a~~l~~~m~~~g~ 38 (87)
|+.++=+.++.-+.+++.. ++|..+-+.|.+.|+
T Consensus 35 ~~cF~GsdlVdWL~~~~~~~sR~eAv~lgq~Ll~~G~ 71 (120)
T 1v3f_A 35 KKTFLGSSLVDWLISSNFAASRLEAVTLASMLMEENF 71 (120)
T ss_dssp SSCEEHHHHHHHHHHTTSCSSHHHHHHHHHHHHHHTS
T ss_pred cceeehHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 5667778888888888754 899999999998885
No 244
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=46.98 E-value=23 Score=21.02 Aligned_cols=21 Identities=24% Similarity=0.175 Sum_probs=18.2
Q ss_pred HHHHHhcCCchhHHHHHHHHH
Q 042815 14 MLGLAKNGKNGMGVELFMSIE 34 (87)
Q Consensus 14 i~~~~~~g~~~~a~~l~~~m~ 34 (87)
+.-|.++|.+++|.++|++.-
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHccchHHHHHHHHHHh
Confidence 456899999999999999954
No 245
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=46.94 E-value=27 Score=21.77 Aligned_cols=46 Identities=4% Similarity=0.069 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHccc
Q 042815 9 TSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKI 55 (87)
Q Consensus 9 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~ 55 (87)
..+.+|.-|...|+.++|.+.++++..-... ..+....+..+.-+.
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~ 213 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLEST 213 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccC
Confidence 4568899999999999999999998632211 223334444444443
No 246
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=44.53 E-value=32 Score=21.52 Aligned_cols=60 Identities=12% Similarity=-0.024 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH---HHHHhchhc
Q 042815 9 TSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV---TLMGIQPQN 69 (87)
Q Consensus 9 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~---~~~~~m~~~ 69 (87)
.-+.+|.-|...|+.++|.+.++++..-... .......+..+.-+...-++ .++..+...
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~ 75 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCA 75 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHC
Confidence 4568899999999999999999998632221 23334444444444332222 556655544
No 247
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=43.49 E-value=17 Score=19.03 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=15.9
Q ss_pred HHHhcCCchhHHHHHHHHH
Q 042815 16 GLAKNGKNGMGVELFMSIE 34 (87)
Q Consensus 16 ~~~~~g~~~~a~~l~~~m~ 34 (87)
..++.|++++|.+++++-.
T Consensus 29 ~~Ak~g~fe~A~~~l~eA~ 47 (105)
T 2e2a_A 29 KAAENGDFAKADSLVVEAG 47 (105)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 3678999999999988864
No 248
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=43.26 E-value=17 Score=18.93 Aligned_cols=19 Identities=16% Similarity=0.115 Sum_probs=15.9
Q ss_pred HHHhcCCchhHHHHHHHHH
Q 042815 16 GLAKNGKNGMGVELFMSIE 34 (87)
Q Consensus 16 ~~~~~g~~~~a~~l~~~m~ 34 (87)
..++.|++++|.+++++-.
T Consensus 27 ~~Ak~g~fe~A~~~l~eA~ 45 (103)
T 1wcr_A 27 KQAKQGDFAAAKAMMDQSR 45 (103)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 3678999999999988864
No 249
>1dp3_A TRAM protein; helix-loop-helix, DNA binding protein; NMR {Escherichia coli} SCOP: a.55.1.2
Probab=42.09 E-value=14 Score=17.11 Aligned_cols=41 Identities=10% Similarity=0.089 Sum_probs=30.2
Q ss_pred HHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccch
Q 042815 17 LAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKI 57 (87)
Q Consensus 17 ~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~ 57 (87)
|.++.-.++.-.+..+=+++|-++..++|+++-+-+-..|.
T Consensus 6 Yvs~~v~~~I~~ive~r~qeGA~~~dvs~Ssv~smLleLGL 46 (55)
T 1dp3_A 6 YVSDEIVYKINKIVERRRAEGAKSTDVSFSSISTMLLELGL 46 (55)
T ss_dssp CCCCTHHHHHHHHHHHHHHHTCCSTTCCHHHHHHHHHHHTT
T ss_pred ehhhHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHhH
Confidence 44455556667777777789999999999988877766653
No 250
>3a54_A Protein-glutaminase; mutant structure like A substrate-enzyme complex, hydrolase; 1.50A {Chryseobacterium proteolyticum} PDB: 3a55_A 3a56_A*
Probab=41.99 E-value=39 Score=20.94 Aligned_cols=37 Identities=11% Similarity=0.108 Sum_probs=25.0
Q ss_pred CcHhHHHHHHHHHHhc-------------------CCchhHHHHHHHHHHcCCCCC
Q 042815 5 RDATTSSAMMLGLAKN-------------------GKNGMGVELFMSIEKRGPRPN 41 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~-------------------g~~~~a~~l~~~m~~~g~~pd 41 (87)
||+.|++.|-..+-.. |.+.+|...-..|.+.|+.|+
T Consensus 120 P~~~T~~~Lf~~i~n~rd~r~~asq~~I~F~YpdDGCyARAHLM~~~l~~~Gi~p~ 175 (305)
T 3a54_A 120 PDVATLNSLFNQIKNQSCGTSTASSPCITFRYPVDGCYARAHKMRQILMNNGYDCE 175 (305)
T ss_dssp SCHHHHHHHHHHHHTTBTTSTTCCSSCBCTTCTTSCHHHHHHHHHHHHHHTTBCCE
T ss_pred CchhhHHHHHHHHhhhhcchhhccCCCccccCCcccHHHHHHHHHHHHHHcCCChh
Confidence 6778888887766543 555666666666667777664
No 251
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=41.78 E-value=68 Score=22.74 Aligned_cols=49 Identities=6% Similarity=0.011 Sum_probs=39.6
Q ss_pred HHHhcCCchhHHHHHHHHHHcCCCCCHh-hHHHHHHHHcccchhHH--HHHHhc
Q 042815 16 GLAKNGKNGMGVELFMSIEKRGPRPNAV-TFVGVLTAYGKIKIFGV--TLMGIQ 66 (87)
Q Consensus 16 ~~~~~g~~~~a~~l~~~m~~~g~~pd~~-t~~~ll~~~~~~~~~~~--~~~~~m 66 (87)
-+...|+++-|+++-++-... .|+.+ ||-.|..+|.+.|+++. ..++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 355689999999999886544 67765 99999999999999998 555554
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=41.61 E-value=32 Score=18.89 Aligned_cols=30 Identities=17% Similarity=0.166 Sum_probs=22.4
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHcCCCCC
Q 042815 10 SSAMMLGLAKNGKNGMGVELFMSIEKRGPRPN 41 (87)
Q Consensus 10 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd 41 (87)
+=-|--|+.+.|++++|.+..+.+.+. .|+
T Consensus 81 LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~ 110 (134)
T 3o48_A 81 LYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 110 (134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTT--CTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--CCC
Confidence 334556889999999999988887644 554
No 253
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=41.33 E-value=13 Score=16.86 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=16.7
Q ss_pred CCchhHHHHHHHHHHcCCCCCH
Q 042815 21 GKNGMGVELFMSIEKRGPRPNA 42 (87)
Q Consensus 21 g~~~~a~~l~~~m~~~g~~pd~ 42 (87)
.++.+|.++++++...|-.|..
T Consensus 7 RDv~RaiELle~lq~sgevp~~ 28 (53)
T 1zl8_A 7 RDVQRILELMEHVQKTGEVNNA 28 (53)
T ss_dssp HHHHHHHHHHHHHGGGSSSTHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcH
Confidence 3567899999999888866543
No 254
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=40.75 E-value=32 Score=20.72 Aligned_cols=23 Identities=9% Similarity=0.034 Sum_probs=19.2
Q ss_pred HHHHHhcCCchhHHHHHHHHHHc
Q 042815 14 MLGLAKNGKNGMGVELFMSIEKR 36 (87)
Q Consensus 14 i~~~~~~g~~~~a~~l~~~m~~~ 36 (87)
+.-|.++|.+++|.++|++....
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHhcchHHHHHHHHHHhcC
Confidence 45589999999999999997643
No 255
>1x87_A Urocanase protein; structural genomics, protein STR initiative, MCSG, PSI, midwest center for structural genomi; HET: MSE NAD; 2.40A {Geobacillus stearothermophilus} SCOP: e.51.1.1
Probab=40.09 E-value=15 Score=24.91 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=23.4
Q ss_pred HHHHHHHhcCC------chhHHHHHHHHHHcCCCCCHhh
Q 042815 12 AMMLGLAKNGK------NGMGVELFMSIEKRGPRPNAVT 44 (87)
Q Consensus 12 ~li~~~~~~g~------~~~a~~l~~~m~~~g~~pd~~t 44 (87)
.++.-..+.++ ...|.++|.++.++|+.||..|
T Consensus 219 ~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~~Dlvt 257 (551)
T 1x87_A 219 EMAKQAKEEKKALSIGLVGNAAEVLPRLVETGFVPDVLT 257 (551)
T ss_dssp HHHHHHHHTTCCEEEEEESCHHHHHHHHHHTTCCCSEEC
T ss_pred HHHHHHHHcCCceEEEEeccHHHHHHHHHHCCCCCCCCC
Confidence 34444444444 3678899999999999997764
No 256
>1uwk_A Urocanate hydratase; hydrolase, urocanase, imidazolonepropionate, histidine metabolism, lyase; HET: NAD URO; 1.19A {Pseudomonas putida} SCOP: e.51.1.1 PDB: 1w1u_A* 1uwl_A* 2v7g_A*
Probab=38.96 E-value=14 Score=24.97 Aligned_cols=33 Identities=33% Similarity=0.558 Sum_probs=23.3
Q ss_pred HHHHHHHhcCC------chhHHHHHHHHHHcCCCCCHhh
Q 042815 12 AMMLGLAKNGK------NGMGVELFMSIEKRGPRPNAVT 44 (87)
Q Consensus 12 ~li~~~~~~g~------~~~a~~l~~~m~~~g~~pd~~t 44 (87)
.++.-..+.++ ...|.++|.++.++|+.||..|
T Consensus 224 ~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~~Dlvt 262 (557)
T 1uwk_A 224 VRIAKYTAEGKAISIALHGNAAEILPELVKRGVRPDMVT 262 (557)
T ss_dssp HHHHHHHHTTCCCEEEEESCHHHHHHHHHHHTCCCSEEC
T ss_pred HHHHHHHHcCCceEEEEeccHHHHHHHHHHCCCCCCCCC
Confidence 34444444444 3678899999999999997764
No 257
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=38.91 E-value=22 Score=18.75 Aligned_cols=19 Identities=26% Similarity=0.302 Sum_probs=15.6
Q ss_pred HHHhcCCchhHHHHHHHHH
Q 042815 16 GLAKNGKNGMGVELFMSIE 34 (87)
Q Consensus 16 ~~~~~g~~~~a~~l~~~m~ 34 (87)
..++.|++++|.+++++-.
T Consensus 31 ~~Ak~gdfe~A~~~l~eA~ 49 (109)
T 3k1s_A 31 QFAKQGKMAEADEAMVKAK 49 (109)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 3578899999999988763
No 258
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=38.12 E-value=70 Score=20.26 Aligned_cols=30 Identities=3% Similarity=0.036 Sum_probs=26.3
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHH
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIE 34 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 34 (87)
+....+.-+...|...|+.++|.++|+.+.
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 567788889999999999999999999975
No 259
>2fkn_A Urocanate hydratase; rossman fold, lyase; HET: NAD; 2.20A {Bacillus subtilis}
Probab=37.97 E-value=15 Score=24.89 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=18.4
Q ss_pred chhHHHHHHHHHHcCCCCCHhh
Q 042815 23 NGMGVELFMSIEKRGPRPNAVT 44 (87)
Q Consensus 23 ~~~a~~l~~~m~~~g~~pd~~t 44 (87)
...|.++|.++.++|+.||..|
T Consensus 237 ~GNaadv~~~l~~~~i~~Dlvt 258 (552)
T 2fkn_A 237 LGNAAEVHHTLLNRGVKIDIVT 258 (552)
T ss_dssp ESCHHHHHHHHHTTTCCCSEEC
T ss_pred eccHHHHHHHHHHCCCCCCCCC
Confidence 3678899999999999997764
No 260
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=37.63 E-value=29 Score=17.15 Aligned_cols=24 Identities=8% Similarity=0.088 Sum_probs=19.6
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHH
Q 042815 12 AMMLGLAKNGKNGMGVELFMSIEK 35 (87)
Q Consensus 12 ~li~~~~~~g~~~~a~~l~~~m~~ 35 (87)
.+-.-|+..|+++.|..+|+...+
T Consensus 17 k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHH
Confidence 455668889999999999998764
No 261
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=37.52 E-value=38 Score=16.53 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=18.0
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHcCCC
Q 042815 11 SAMMLGLAKNGKNGMGVELFMSIEKRGPR 39 (87)
Q Consensus 11 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 39 (87)
.++|..-.+-| +.+|-.+.++|...|+.
T Consensus 27 ~S~lQR~lrIG-YnRAArlid~lE~~GiV 54 (73)
T 2ve8_A 27 ISAVQRKLKIG-YNRAARMIEAMEMAGVV 54 (73)
T ss_dssp HHHHHHHHTCC-HHHHHHHHHHHHHTTSB
T ss_pred HHHHHHHHccC-hHHHHHHHHHHHHCCcC
Confidence 35555555555 56677777777777754
No 262
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=37.14 E-value=46 Score=17.34 Aligned_cols=57 Identities=5% Similarity=-0.075 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccch-hHH---HHHHhchhcccccccchhhhhh
Q 042815 24 GMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKI-FGV---TLMGIQPQNLWYYIDGQIDAWQ 82 (87)
Q Consensus 24 ~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~-~~~---~~~~~m~~~~~~g~~~~~~~~~ 82 (87)
-.|.++-++...-|+.|+..+..=++.-|-.-+. .++ +++..-... .|..|+....+
T Consensus 26 Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~lda~e~VeeWmAFsts~--~g~~pT~enL~ 86 (101)
T 2keb_A 26 ASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTST--HKVGLTSEILN 86 (101)
T ss_dssp CCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TCSBCCHHHHH
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--CCCCCCHHHHH
Confidence 4567778888888999998887777777766543 111 333222222 37777776544
No 263
>2cso_A Pleckstrin; DEP domain, platelet P47 protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.31
Probab=37.03 E-value=36 Score=18.44 Aligned_cols=35 Identities=17% Similarity=0.112 Sum_probs=27.4
Q ss_pred CcHhHHHHHHHHHHhcCCc---hhHHHHHHHHHHcCCC
Q 042815 5 RDATTSSAMMLGLAKNGKN---GMGVELFMSIEKRGPR 39 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~---~~a~~l~~~m~~~g~~ 39 (87)
|+.++=+.|+..+.+++.. ++|..+-+.+.+.|+-
T Consensus 45 ~~cF~GsdlVdWLl~~~~~~sR~EAv~lg~~Ll~~G~i 82 (127)
T 2cso_A 45 NHCFTGNCVIDWLVSNQSVRNRQEGLMIASSLLNEGYL 82 (127)
T ss_dssp EEEEEHHHHHHHHHHTTSCSSHHHHHHHHHHHHHHTSS
T ss_pred cceeechHHHHHHHHcCCCCCHHHHHHHHHHHHHCCeE
Confidence 4556667888888888753 7899999999998843
No 264
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=36.23 E-value=26 Score=18.89 Aligned_cols=19 Identities=0% Similarity=-0.034 Sum_probs=15.7
Q ss_pred HHHhcCCchhHHHHHHHHH
Q 042815 16 GLAKNGKNGMGVELFMSIE 34 (87)
Q Consensus 16 ~~~~~g~~~~a~~l~~~m~ 34 (87)
..++.|++++|.+++++-.
T Consensus 46 ~~Ak~gdfe~A~~~l~eA~ 64 (120)
T 3l8r_A 46 DAMREKNYILAEQKLQEAN 64 (120)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 3578899999999998864
No 265
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=35.95 E-value=45 Score=21.20 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHH------------------------HHHcCCCCCHhhHHHHHHHHcccc
Q 042815 9 TSSAMMLGLAKNGKNGMGVELFMS------------------------IEKRGPRPNAVTFVGVLTAYGKIK 56 (87)
Q Consensus 9 ~~~~li~~~~~~g~~~~a~~l~~~------------------------m~~~g~~pd~~t~~~ll~~~~~~~ 56 (87)
.|-++...|.+.+++++|++++.+ ..+.++++|..+..-++..+....
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~ 108 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ 108 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 567788888888888888886544 123456666666555555555443
No 266
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=35.81 E-value=38 Score=17.08 Aligned_cols=25 Identities=12% Similarity=0.232 Sum_probs=14.3
Q ss_pred CCCcHhHHHHHHHHHHhcCCchhHH
Q 042815 3 PPRDATTSSAMMLGLAKNGKNGMGV 27 (87)
Q Consensus 3 ~~~~~~~~~~li~~~~~~g~~~~a~ 27 (87)
|.+...+|..++.++.+.|+.+-|.
T Consensus 64 ~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 64 ETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp TTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred HHcChHHHHHHHHHHHHcCcHHHHH
Confidence 4455566666666665555544443
No 267
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=35.52 E-value=53 Score=22.20 Aligned_cols=29 Identities=10% Similarity=-0.003 Sum_probs=25.8
Q ss_pred cHhHHHHHHHHHHhcCCchhHHHHHHHHH
Q 042815 6 DATTSSAMMLGLAKNGKNGMGVELFMSIE 34 (87)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 34 (87)
+...|..+-..+.+.|+++.|.+.|.++.
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 45789999999999999999999999875
No 268
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=34.64 E-value=89 Score=19.88 Aligned_cols=61 Identities=8% Similarity=0.029 Sum_probs=36.2
Q ss_pred cHhHHHHHHHHHHh----cCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcc----cchhHH--HHHHhchhc
Q 042815 6 DATTSSAMMLGLAK----NGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGK----IKIFGV--TLMGIQPQN 69 (87)
Q Consensus 6 ~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~----~~~~~~--~~~~~m~~~ 69 (87)
+...+..+=..|.+ .+++++|...|++..+.| +...+..+=..+.+ .++.++ .+|+.....
T Consensus 362 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 362 EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 34456666666666 677888888888776655 33344444444443 455555 666655544
No 269
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=34.62 E-value=50 Score=17.04 Aligned_cols=26 Identities=15% Similarity=0.023 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHH
Q 042815 8 TTSSAMMLGLAKNGKNGMGVELFMSI 33 (87)
Q Consensus 8 ~~~~~li~~~~~~g~~~~a~~l~~~m 33 (87)
..+.---..+.+.|++++|++...+-
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 34555667889999999998876663
No 270
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=34.45 E-value=97 Score=20.26 Aligned_cols=58 Identities=9% Similarity=-0.117 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH---HHHHhchhc
Q 042815 9 TSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV---TLMGIQPQN 69 (87)
Q Consensus 9 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~---~~~~~m~~~ 69 (87)
.|...+.-|-. |+++++..+|++-... .|+...|..-+.-.-+.+.-.+ .+|+.....
T Consensus 17 vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~ 77 (493)
T 2uy1_A 17 IMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQ 77 (493)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHH
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 56666666665 7899999999997763 5788888777776665553222 677776654
No 271
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=34.22 E-value=73 Score=18.81 Aligned_cols=45 Identities=9% Similarity=0.189 Sum_probs=30.4
Q ss_pred HHHHHHHh---cCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccch
Q 042815 12 AMMLGLAK---NGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKI 57 (87)
Q Consensus 12 ~li~~~~~---~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~ 57 (87)
-+|+++-| ..+.+.|+-.+.+|.+.| .|.-..=..++-+.=..|.
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 35666655 578999999999999999 6654444444444444443
No 272
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=34.03 E-value=50 Score=20.64 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHH
Q 042815 9 TSSAMMLGLAKNGKNGMGVELFMS 32 (87)
Q Consensus 9 ~~~~li~~~~~~g~~~~a~~l~~~ 32 (87)
.|-++...|.+.+++++|++++.+
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ 58 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ 58 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH
Confidence 466777777777777777776544
No 273
>1nnv_A Hypothetical protein HI1450; structure 2 function project, S2F, structural genomics, unknown function; NMR {Haemophilus influenzae} SCOP: d.17.7.1
Probab=33.69 E-value=20 Score=18.95 Aligned_cols=38 Identities=11% Similarity=0.290 Sum_probs=28.1
Q ss_pred chhHHHHHHHHHHcCCCC-CHhhHHHHHHHHcccchhHH
Q 042815 23 NGMGVELFMSIEKRGPRP-NAVTFVGVLTAYGKIKIFGV 60 (87)
Q Consensus 23 ~~~a~~l~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~ 60 (87)
.+.|..+|-+|....+.| |...|+.-+.-.+....++.
T Consensus 17 id~AYDiFLE~A~dNL~paDillFnlqFEerGaaE~v~~ 55 (110)
T 1nnv_A 17 IDIAYDIFLEMAGENLDPADILLFNLQFEERGGVEFVET 55 (110)
T ss_dssp HHHHHHHHHHHCSTTSCHHHHHHHHHSSSTTCEEEEECC
T ss_pred HHHHHHHHHHhhhhcCCHHHHHHHHHhHHhcCCeeccCc
Confidence 478999999998888888 66677776666665555543
No 274
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=33.45 E-value=43 Score=15.95 Aligned_cols=47 Identities=15% Similarity=0.046 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccc
Q 042815 9 TSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIK 56 (87)
Q Consensus 9 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~ 56 (87)
.++-++..+++..-+++++-.+.+....| ..+..+|.--++..++.-
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaReQ 50 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQQ 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHH
Confidence 46788888999888999999999999988 446666665555555543
No 275
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=32.83 E-value=72 Score=19.05 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=34.6
Q ss_pred HHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchh
Q 042815 17 LAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIF 58 (87)
Q Consensus 17 ~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~ 58 (87)
....|+-+.+.+++++....|..|.......++.+.-..|..
T Consensus 46 al~~gd~~~~~~~~~~al~~g~~~~~i~~~~l~p~l~~vG~~ 87 (258)
T 2i2x_B 46 AIFEGEEDDVVEGLQAAIEAGKDPIDLIDDALMVGMGVVIRL 87 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCCTTTHHHHTHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999999999888887777888888777654
No 276
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=32.68 E-value=27 Score=17.19 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=13.7
Q ss_pred HHhcCCchhHHHHHHHHH
Q 042815 17 LAKNGKNGMGVELFMSIE 34 (87)
Q Consensus 17 ~~~~g~~~~a~~l~~~m~ 34 (87)
+=+.|++++|+.+|.+-.
T Consensus 21 ~D~~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 21 ADKEGKVEDAITYYKKAI 38 (83)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHH
Confidence 345799999999888744
No 277
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A
Probab=32.44 E-value=35 Score=19.44 Aligned_cols=30 Identities=17% Similarity=0.101 Sum_probs=21.0
Q ss_pred hhHHHHHHHHH-HcCCCCCHhhHHHHHHHHcc
Q 042815 24 GMGVELFMSIE-KRGPRPNAVTFVGVLTAYGK 54 (87)
Q Consensus 24 ~~a~~l~~~m~-~~g~~pd~~t~~~ll~~~~~ 54 (87)
+++...|.+|+ ..||.| ..||.-.+..+..
T Consensus 5 ee~~~~F~~lL~~~~V~~-~~~We~~~~~i~~ 35 (190)
T 3hfh_A 5 SARMXQFXDMLLERGVSA-FSTWEXELHXIVF 35 (190)
T ss_dssp CHHHHHHHHHHHHTTCCS-SSCHHHHGGGTTT
T ss_pred HHHHHHHHHHHHHcCcCC-CCchhhhhhhhcc
Confidence 68889999998 456554 4577777665543
No 278
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=32.34 E-value=32 Score=14.06 Aligned_cols=21 Identities=10% Similarity=-0.067 Sum_probs=16.5
Q ss_pred HHHHHhcCCchhHHHHHHHHH
Q 042815 14 MLGLAKNGKNGMGVELFMSIE 34 (87)
Q Consensus 14 i~~~~~~g~~~~a~~l~~~m~ 34 (87)
+.-|.+.|..++|..+=.+|+
T Consensus 9 ~eYYrsiG~~~eAeaIe~q~k 29 (33)
T 2bn5_A 9 AEYYRSVGKIEEAEAIEKTLK 29 (33)
T ss_dssp HHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHcccHHHHHHHHHHHH
Confidence 445777899999999877775
No 279
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=32.24 E-value=28 Score=17.22 Aligned_cols=18 Identities=11% Similarity=0.145 Sum_probs=14.0
Q ss_pred HHhcCCchhHHHHHHHHH
Q 042815 17 LAKNGKNGMGVELFMSIE 34 (87)
Q Consensus 17 ~~~~g~~~~a~~l~~~m~ 34 (87)
+=+.|++++|+.+|.+-.
T Consensus 29 ~D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 29 ADKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHH
Confidence 446899999999888744
No 280
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=32.15 E-value=75 Score=23.34 Aligned_cols=50 Identities=8% Similarity=0.054 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH
Q 042815 9 TSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV 60 (87)
Q Consensus 9 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~ 60 (87)
.|..+..++.+.|++++|...+..++....+- ..+..++...|..+.++.
T Consensus 940 l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~--~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 940 ITHETLKTACAAGKFDAAHVALMVLSTTPLKK--SCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCH--HHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHH--HHHHHHHHHHHhCCChhh
Confidence 57888888888888888888888877665543 344455666665555543
No 281
>2ets_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.25A {Staphylococcus aureus subsp} SCOP: a.24.26.1
Probab=31.15 E-value=68 Score=17.46 Aligned_cols=32 Identities=6% Similarity=0.041 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCC
Q 042815 8 TTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPN 41 (87)
Q Consensus 8 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd 41 (87)
..-|.+|.-+... .+++...|.++++.|..||
T Consensus 11 ~~~~~~i~~L~~~--~~~~~~ry~~~ke~~~e~D 42 (128)
T 2ets_A 11 HHMNDLVESLIYE--VNNMQQNFENVKSQQQDHD 42 (128)
T ss_dssp THHHHHHHHHHHH--HHHHHHHHHHHHHHTCCCC
T ss_pred HhHHHHHHHHHHH--HHHHHHHHHHHHhcCCCCC
Confidence 4556777766654 6888999999998886665
No 282
>2eab_A Alpha-fucosidase; glycoside hydrolase; 1.12A {Bifidobacterium bifidum} PDB: 2eac_A* 2ead_A* 2eae_A*
Probab=30.97 E-value=52 Score=23.79 Aligned_cols=31 Identities=16% Similarity=0.088 Sum_probs=26.6
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHcCCCCCHh
Q 042815 13 MMLGLAKNGKNGMGVELFMSIEKRGPRPNAV 43 (87)
Q Consensus 13 li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~ 43 (87)
.+..+++.|+.++|.++++++...++-||..
T Consensus 728 ~~~~~ARL~dg~~A~~~l~~ll~~~~~~Nl~ 758 (899)
T 2eab_A 728 RINSWARTGDGNTTYQLVELQLKNAMYANLF 758 (899)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSBCTTCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCcCcccc
Confidence 5567799999999999999999888888654
No 283
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=30.20 E-value=1.1e+02 Score=19.68 Aligned_cols=39 Identities=15% Similarity=0.108 Sum_probs=28.0
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhH
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTF 45 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~ 45 (87)
|+...|..+=..+.-.|++++|.+.|.+-... .|...||
T Consensus 308 ~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 308 MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 45555655556667799999999999987655 5555555
No 284
>2hm2_Q ASC2, pyrin-only protein 1, PAAD-only; pyrin domain, six helix bundle, apoptosis; NMR {Homo sapiens}
Probab=29.51 E-value=20 Score=17.88 Aligned_cols=25 Identities=4% Similarity=0.126 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHH
Q 042815 10 SSAMMLGLAKNGKNGMGVELFMSIE 34 (87)
Q Consensus 10 ~~~li~~~~~~g~~~~a~~l~~~m~ 34 (87)
=+-|+..|...+-++-+..+|++|-
T Consensus 53 a~lLv~~y~~~~A~~vt~~if~~mn 77 (89)
T 2hm2_Q 53 TDKLVASYYEDYAAELVVAVLRDMR 77 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHcC
Confidence 3456666767777788888888875
No 285
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=29.28 E-value=33 Score=16.26 Aligned_cols=15 Identities=7% Similarity=-0.093 Sum_probs=12.5
Q ss_pred cCCchhHHHHHHHHH
Q 042815 20 NGKNGMGVELFMSIE 34 (87)
Q Consensus 20 ~g~~~~a~~l~~~m~ 34 (87)
+|++++|+.++++--
T Consensus 35 ~GDi~~Ai~~Lr~kg 49 (64)
T 2cp9_A 35 GGDLKQAEIWLHKEA 49 (64)
T ss_dssp TSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 689999999988743
No 286
>2ftc_L MRPL20 protein; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=29.10 E-value=72 Score=17.11 Aligned_cols=17 Identities=6% Similarity=0.276 Sum_probs=8.9
Q ss_pred CHhhHHHHHHHHcccch
Q 042815 41 NAVTFVGVLTAYGKIKI 57 (87)
Q Consensus 41 d~~t~~~ll~~~~~~~~ 57 (87)
+..+|+.+|.++.+.+-
T Consensus 72 ~g~sYs~fi~~L~k~~I 88 (118)
T 2ftc_L 72 HGLKYPALIGNLVKCQV 88 (118)
T ss_pred cCCCHHHHHHHHHHhCC
Confidence 33455555655555543
No 287
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=29.09 E-value=66 Score=16.66 Aligned_cols=61 Identities=2% Similarity=-0.236 Sum_probs=36.0
Q ss_pred cHhHHHHHHHHHHh----cCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcc----cchhHH--HHHHhchhc
Q 042815 6 DATTSSAMMLGLAK----NGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGK----IKIFGV--TLMGIQPQN 69 (87)
Q Consensus 6 ~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~----~~~~~~--~~~~~m~~~ 69 (87)
+..+++.|=..|.+ .+++++|.+.|++-.+.| +...+..+=..+.. .++.++ .+|+.....
T Consensus 56 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 34455556566666 678888888888877665 33334444344443 455555 556655543
No 288
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.65 E-value=69 Score=21.72 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=25.3
Q ss_pred HhHHHHHHHHHHhcCCchhHHHHHHHHH
Q 042815 7 ATTSSAMMLGLAKNGKNGMGVELFMSIE 34 (87)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~a~~l~~~m~ 34 (87)
...+|.++.-|...+.+++|..+..+..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~ 258 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE 258 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc
Confidence 4689999999999999999999998864
No 289
>1v54_I STA, cytochrome C oxidase polypeptide VIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.3.1 PDB: 1oco_I* 1occ_I* 1ocz_I* 1ocr_I* 1v55_I* 2dyr_I* 2dys_I* 2eij_I* 2eik_I* 2eil_I* 2eim_I* 2ein_I* 2occ_I* 2ybb_T* 2zxw_I* 3abk_I* 3abl_I* 3abm_I* 3ag1_I* 3ag2_I* ...
Probab=27.04 E-value=41 Score=16.43 Aligned_cols=14 Identities=21% Similarity=0.256 Sum_probs=10.4
Q ss_pred HHHHHHHHHHcCCC
Q 042815 26 GVELFMSIEKRGPR 39 (87)
Q Consensus 26 a~~l~~~m~~~g~~ 39 (87)
+.+-|++|++.|+-
T Consensus 56 ~~k~ferMk~aG~f 69 (73)
T 1v54_I 56 SMKDFEEMRKAGIF 69 (73)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHcccc
Confidence 45568999998863
No 290
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=26.93 E-value=1e+02 Score=18.16 Aligned_cols=40 Identities=18% Similarity=0.139 Sum_probs=27.2
Q ss_pred HHHHHHHh---cCCchhHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 042815 12 AMMLGLAK---NGKNGMGVELFMSIEKRGPRPNAVTFVGVLTA 51 (87)
Q Consensus 12 ~li~~~~~---~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~ 51 (87)
-+|+++-| ..+.+.|+-.+.+|.+.|-.|.-..=..++-+
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~A 51 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIA 51 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 35566655 57899999999999999866644433333333
No 291
>4ewi_A Nacht, LRR and PYD domains-containing protein 4; NLR proteins, death domain, pyrin domain, NLRP4, ASC, innate system, inflammasome, apoptosis; 2.28A {Homo sapiens}
Probab=26.85 E-value=24 Score=18.66 Aligned_cols=24 Identities=4% Similarity=0.231 Sum_probs=15.6
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHH
Q 042815 11 SAMMLGLAKNGKNGMGVELFMSIE 34 (87)
Q Consensus 11 ~~li~~~~~~g~~~~a~~l~~~m~ 34 (87)
+-|+..|...+-++-+..+|++|-
T Consensus 59 ~lLv~~y~~~~A~~vtl~if~~mn 82 (113)
T 4ewi_A 59 NLLIKHYEEQQAWNITLRIFQKMD 82 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcChhHHHHHHHHHHHHhC
Confidence 445666666666677777777764
No 292
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=26.73 E-value=40 Score=16.77 Aligned_cols=17 Identities=0% Similarity=-0.080 Sum_probs=13.8
Q ss_pred HhcCCchhHHHHHHHHH
Q 042815 18 AKNGKNGMGVELFMSIE 34 (87)
Q Consensus 18 ~~~g~~~~a~~l~~~m~ 34 (87)
=+.|++++|+.+|.+-.
T Consensus 27 D~~g~y~eAl~lY~~Ai 43 (86)
T 4a5x_A 27 DSESRYPQALVCYQEGI 43 (86)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 45799999999998854
No 293
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=26.35 E-value=45 Score=13.88 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=14.3
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHcC
Q 042815 11 SAMMLGLAKNGKNGMGVELFMSIEKRG 37 (87)
Q Consensus 11 ~~li~~~~~~g~~~~a~~l~~~m~~~g 37 (87)
++||.+| ++|..-|+.-.+.|
T Consensus 12 tALIKay------DKAVaSfk~alk~~ 32 (37)
T 3s6n_M 12 TALIKAY------DKAVASFKHALKNG 32 (37)
T ss_pred HHHHHHH------HHHHHHHHHHHhcC
Confidence 5677665 66788887766555
No 294
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=26.19 E-value=49 Score=17.11 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=13.9
Q ss_pred HHHHHHHHHcCCCCCHhhH
Q 042815 27 VELFMSIEKRGPRPNAVTF 45 (87)
Q Consensus 27 ~~l~~~m~~~g~~pd~~t~ 45 (87)
.+-.++++..|+.||..-+
T Consensus 23 eekinELk~dG~ePDIiL~ 41 (103)
T 2pk8_A 23 EEKMNELKMDGFNPDIILF 41 (103)
T ss_dssp HHHHHHHHHTTCCCCEEEE
T ss_pred HHHHHHHHhcCCCCCeEEE
Confidence 3445677889999998744
No 295
>2bbr_A Viral CAsp8 and FADD-like apoptosis regulator; viral protein; 1.20A {Molluscum contagiosum virus subtype 1} PDB: 2f1s_A
Probab=25.98 E-value=62 Score=18.86 Aligned_cols=46 Identities=20% Similarity=0.256 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHhcCCch-----hHHHHHHHHHHcC-CCCCHhhH-HHHHHHHc
Q 042815 8 TTSSAMMLGLAKNGKNG-----MGVELFMSIEKRG-PRPNAVTF-VGVLTAYG 53 (87)
Q Consensus 8 ~~~~~li~~~~~~g~~~-----~a~~l~~~m~~~g-~~pd~~t~-~~ll~~~~ 53 (87)
....-+...+.-.++.+ .+.++|.+|.+.+ +.|+-..+ ..++....
T Consensus 113 ~~lKFL~~~~ipk~kle~~~~~s~ldlf~~LEk~~~l~~~nL~~L~~iL~~I~ 165 (195)
T 2bbr_A 113 RALRLFACNLNPSLSTALSESSRFVELVLALENVGLVSPSSVSVLADMLRTLR 165 (195)
T ss_dssp HHHHHHHHHHCGGGGGGCCTTCCHHHHHHHHHHTTSCBTTBCHHHHHHHHHTT
T ss_pred HHHHHHhhcccchhhcccccCCCHHHHHHHHHhhCCCCchhHHHHHHHHHHcC
Confidence 33334444444455555 8999999999877 55555544 33444443
No 296
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=25.60 E-value=83 Score=16.66 Aligned_cols=49 Identities=8% Similarity=0.043 Sum_probs=33.1
Q ss_pred HHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 15 LGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 15 ~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
..+.+.|+|++|..+.+.+. .||...|-++-.. +.|.-++ ..+.++..+
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNP----WPALEPWFALCEW--HLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHH--HTTCHHHHHHHHHHHHTC
T ss_pred HHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHHHHHhC
Confidence 45788999999999876654 8999999776544 4444444 334344443
No 297
>2f40_A Hypothetical protein PF1455; protein structure prediction, residual dipolar couplings, PY furious, simulated annealing, structural genomics; NMR {Pyrococcus furiosus} SCOP: i.11.1.1
Probab=25.58 E-value=0.99 Score=23.08 Aligned_cols=19 Identities=11% Similarity=-0.045 Sum_probs=13.1
Q ss_pred CcHhHHHHHHHHHHhcCCc
Q 042815 5 RDATTSSAMMLGLAKNGKN 23 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~ 23 (87)
.+..+|-..|.||+++|.+
T Consensus 32 k~~avyRvFiNgYAk~g~V 50 (96)
T 2f40_A 32 TRDEFYRVFINPYAKVAEV 50 (96)
T ss_dssp TTTTBCCCCCCTTTTCCEE
T ss_pred cchhhhhheeccccccceE
Confidence 3455677778888887764
No 298
>3fke_A Polymerase cofactor VP35; RNA binding domain, coiled coil, interferon antiviral system evasion, RNA replication, RNA-binding; 1.40A {Zaire ebolavirus - mayinga} PDB: 3l25_A 3l26_A 3l28_A 3l27_A 3l29_A 3l2a_A
Probab=25.55 E-value=18 Score=19.31 Aligned_cols=34 Identities=9% Similarity=-0.082 Sum_probs=22.5
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH
Q 042815 27 VELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV 60 (87)
Q Consensus 27 ~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~ 60 (87)
...|.++.-..+.-...+|-.|.++.|+.|+-..
T Consensus 10 akdl~~il~~hLpG~~TaFH~Lvqvi~kvgkd~~ 43 (129)
T 3fke_A 10 AKDLRNIMYDHLPGFGTAFHQLVQVICKLGKDSN 43 (129)
T ss_dssp HHHHHHHHHTTSSSSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHccchh
Confidence 3445666555555566788888888888776544
No 299
>2zk9_X Protein-glutaminase; deamidation glutaminase, hydrolase; 1.15A {Chryseobacterium proteolyticum} PDB: 2ksv_A 2z8t_X
Probab=25.26 E-value=24 Score=20.37 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=26.7
Q ss_pred CcHhHHHHHHHHHH-------------------hcCCchhHHHHHHHHHHcCCCCCH
Q 042815 5 RDATTSSAMMLGLA-------------------KNGKNGMGVELFMSIEKRGPRPNA 42 (87)
Q Consensus 5 ~~~~~~~~li~~~~-------------------~~g~~~~a~~l~~~m~~~g~~pd~ 42 (87)
||+.+|+.|....- ..|.+.+|...-..+.+.|+.|+.
T Consensus 6 p~~~s~~~lf~~i~n~~~~~~~a~~pdI~f~YpddGCyARAHlm~~~l~~~Gi~p~K 62 (185)
T 2zk9_X 6 PDVATLNSLFNQIKNESCGTSTASSPCITFRYPVDGCYARAHKMRQILMNNGYDCEK 62 (185)
T ss_dssp SCHHHHHHHHHHHHTTBTTCTTCCSSCBCTTCTTSCHHHHHHHHHHHHHHTTBCCEE
T ss_pred CchHHHHHHHHHHhhccccccccCCCCcccccCcccHHHHHHHHHHHHHHcCCChhh
Confidence 67788887766433 345567787777778888888754
No 300
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=25.19 E-value=91 Score=17.00 Aligned_cols=47 Identities=9% Similarity=0.062 Sum_probs=29.9
Q ss_pred chhHHHHHHHHH-HcCCCC---CHhhHHHHHHHHcccchhHH-HHHHhchhc
Q 042815 23 NGMGVELFMSIE-KRGPRP---NAVTFVGVLTAYGKIKIFGV-TLMGIQPQN 69 (87)
Q Consensus 23 ~~~a~~l~~~m~-~~g~~p---d~~t~~~ll~~~~~~~~~~~-~~~~~m~~~ 69 (87)
+|.|..+.++.. ..|+.| +..++.-+++...+.|-++. +.|-.|...
T Consensus 54 ~Elawk~~k~~L~~~g~~~~~~~~~s~rd~~r~a~~~GlI~d~~~w~~m~~~ 105 (146)
T 1jog_A 54 YELSLKMMKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDMSKWVAYRDM 105 (146)
T ss_dssp HHHHHHHHHHHHHHHTCSCCCTTSCCHHHHHHHHHHTTSCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 344444444443 356665 47788888888888888776 666666543
No 301
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=24.83 E-value=1.1e+02 Score=17.61 Aligned_cols=50 Identities=14% Similarity=0.037 Sum_probs=38.4
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHccc
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKI 55 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~ 55 (87)
|....++-|+..++.-.-+++++-.+.+....|. .+..+|.=-++.+++.
T Consensus 109 ~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaRe 158 (174)
T 2p22_A 109 AKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELARQ 158 (174)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 3446779999999999999999999999998884 4666665555555554
No 302
>4a1n_A Nuclease EXOG, mitochondrial; hydrolase; 2.80A {Homo sapiens}
Probab=24.59 E-value=47 Score=21.08 Aligned_cols=24 Identities=4% Similarity=0.029 Sum_probs=18.8
Q ss_pred cCCchhHHHHHHHHHHcCCCCCHh
Q 042815 20 NGKNGMGVELFMSIEKRGPRPNAV 43 (87)
Q Consensus 20 ~g~~~~a~~l~~~m~~~g~~pd~~ 43 (87)
++..++-.+++.++++.|+.||..
T Consensus 279 a~~~~~l~~~~~~~~~~~~~~~~~ 302 (335)
T 4a1n_A 279 ARSVLRLEKIMVNLKNAEIEPDDY 302 (335)
T ss_dssp --CTTCHHHHHHHHHC-CCCCCHH
T ss_pred hcCHHHHHHHHHHHHHcCCChhHH
Confidence 467788899999999999999984
No 303
>3qf2_A Nacht, LRR and PYD domains-containing protein 3; six helix bundle, apoptosis; 1.70A {Homo sapiens}
Probab=24.45 E-value=21 Score=18.76 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=13.1
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHH
Q 042815 11 SAMMLGLAKNGKNGMGVELFMSIE 34 (87)
Q Consensus 11 ~~li~~~~~~g~~~~a~~l~~~m~ 34 (87)
+.|+..|....-++-+..+|++|.
T Consensus 54 ~lLv~~y~~~~A~~vt~~if~~mn 77 (110)
T 3qf2_A 54 TLMIDFNGEEKAWAMAVWIFAAIN 77 (110)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCHHHHHHHHHHHHHHcC
Confidence 344555555555566666666653
No 304
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=24.15 E-value=1.2e+02 Score=20.80 Aligned_cols=64 Identities=11% Similarity=0.013 Sum_probs=41.2
Q ss_pred CcHhHHHHHHHHHHhcCCchhHHHHHHH----HHHcCCCCCHh------------------hHHHHHHHHcccchhHH--
Q 042815 5 RDATTSSAMMLGLAKNGKNGMGVELFMS----IEKRGPRPNAV------------------TFVGVLTAYGKIKIFGV-- 60 (87)
Q Consensus 5 ~~~~~~~~li~~~~~~g~~~~a~~l~~~----m~~~g~~pd~~------------------t~~~ll~~~~~~~~~~~-- 60 (87)
-|..+|-..+.-|...|...+..++++. .....+.+|.+ -.-.+|.-.++.|.+++
T Consensus 26 ~d~~~f~~~~~~~l~~g~~~~l~eilqDe~n~~l~~~igWdLv~~lv~~l~~~~~~~~~~~~s~~iL~~la~lcnPrEvi 105 (596)
T 4f52_E 26 EDFGLFQLAGQRCIEEGHTDQLLEIIQNEKNKVIIKNMGWNLVGPVVRCLLCKDKEDSKRKVYFLIFDLLVKLCNPKELL 105 (596)
T ss_dssp ---CHHHHHHHHHHSSSCSHHHHHHHTTCTTHHHHHHTGGGGHHHHHHHHHTSCCCSSSTHHHHHHHHHHHHHSCGGGHH
T ss_pred hHHHHHHHHHHHHcCcccHHHHHHHHhCcchhHHHHHcCcccHHHHHHHHhhccccccchhHHHHHHHHHHHhCCHHHHH
Confidence 4778899999999999999998888876 23333444544 23344666677777776
Q ss_pred -HHHHhchh
Q 042815 61 -TLMGIQPQ 68 (87)
Q Consensus 61 -~~~~~m~~ 68 (87)
.+.+.+..
T Consensus 106 l~llE~le~ 114 (596)
T 4f52_E 106 LGLLELIEE 114 (596)
T ss_dssp HHHGGGGTS
T ss_pred HHHHHHHhc
Confidence 55555543
No 305
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=24.03 E-value=1.2e+02 Score=18.02 Aligned_cols=45 Identities=13% Similarity=0.179 Sum_probs=30.4
Q ss_pred HHHHHHHh---cCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccc
Q 042815 12 AMMLGLAK---NGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIK 56 (87)
Q Consensus 12 ~li~~~~~---~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~ 56 (87)
-+|+++-| ..+++.|+-.+.+|.+.|-.|.-..=..++-+.=..|
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 45666655 5789999999999999997765544444444443444
No 306
>3r8s_Q 50S ribosomal protein L20; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_O 1p86_O 2awb_Q 2aw4_Q 2i2v_Q 2j28_Q 2i2t_Q* 2qao_Q* 2qba_Q* 2qbc_Q* 2qbe_Q 2qbg_Q 2qbi_Q* 2qbk_Q* 2qov_Q 2qox_Q 2qoz_Q* 2qp1_Q* 2rdo_Q 2vhm_Q ...
Probab=23.65 E-value=68 Score=17.17 Aligned_cols=13 Identities=8% Similarity=0.253 Sum_probs=7.1
Q ss_pred hHHHHHHHHcccc
Q 042815 44 TFVGVLTAYGKIK 56 (87)
Q Consensus 44 t~~~ll~~~~~~~ 56 (87)
+|+.+|.++.+.+
T Consensus 74 sYs~fi~~L~k~~ 86 (117)
T 3r8s_Q 74 SYSKFINGLKKAS 86 (117)
T ss_dssp CHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcC
Confidence 4555555555544
No 307
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=23.52 E-value=50 Score=18.74 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=5.2
Q ss_pred HHHcCCCCCHh
Q 042815 33 IEKRGPRPNAV 43 (87)
Q Consensus 33 m~~~g~~pd~~ 43 (87)
....++.||.+
T Consensus 115 ~~~~~~~PDl~ 125 (197)
T 3hjn_A 115 FATDGLIPDLT 125 (197)
T ss_dssp HHHTTCCCSEE
T ss_pred hhhcCCCCCce
Confidence 33445555544
No 308
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=22.97 E-value=1.2e+02 Score=20.04 Aligned_cols=33 Identities=3% Similarity=-0.045 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC
Q 042815 8 TTSSAMMLGLAKNGKNGMGVELFMSIEKRGPRP 40 (87)
Q Consensus 8 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p 40 (87)
..-|.++.-|.+.|+.+.|..+++.+...+..|
T Consensus 177 ~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p 209 (455)
T 3t5v_B 177 YLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLA 209 (455)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCc
Confidence 356888999999999999999999999887744
No 309
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=22.74 E-value=1.2e+02 Score=18.39 Aligned_cols=41 Identities=7% Similarity=-0.019 Sum_probs=23.3
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 29 LFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 29 l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
++..+.+.|+.|..+++.=++..+++.=.++. ++|+.+...
T Consensus 176 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~ 218 (310)
T 3hzj_A 176 LHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCE 218 (310)
T ss_dssp HHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Confidence 44455556666666666666666665434444 555555544
No 310
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=22.51 E-value=1e+02 Score=16.67 Aligned_cols=64 Identities=8% Similarity=-0.008 Sum_probs=32.3
Q ss_pred HhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH-HHHHhchhcccccccchhhhhhcc
Q 042815 18 AKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV-TLMGIQPQNLWYYIDGQIDAWQAA 84 (87)
Q Consensus 18 ~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~-~~~~~m~~~~~~g~~~~~~~~~~~ 84 (87)
.++|..++|.++|++-...- ... .-...-+.....-.++.. ......... ...+.-+..+++.+
T Consensus 46 v~~g~~~~A~~F~~~f~~~~-~~~-~~~i~~L~~i~~~e~l~~n~~~~~fr~n-Ky~I~ls~~s~~lL 110 (138)
T 2j4b_A 46 IQQNKTDEAKEFFEKYRGDH-YNK-SEEIKQFESIYTVQHIHENNFAYTFKNS-KYHLSMGRYAFDLL 110 (138)
T ss_dssp HHTTCHHHHHHHHHHHGGGC---C-HHHHHHHTTCCSHHHHHHCHHHHHHHHS-CEEEEEEHHHHHHH
T ss_pred HHCCChHHHHHHHHHHhHHH-hhH-HHHHHHHhcCCCHHHHhhCHHHHHHHhC-CeEEEECHHHHHHH
Confidence 45789999999999975332 112 333333333444445544 333333322 13345555555544
No 311
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=22.35 E-value=83 Score=16.18 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=17.3
Q ss_pred HHHhcCCchhHHHHHHHHHHc
Q 042815 16 GLAKNGKNGMGVELFMSIEKR 36 (87)
Q Consensus 16 ~~~~~g~~~~a~~l~~~m~~~ 36 (87)
-+.+.|++.+|..+|++....
T Consensus 62 ~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 62 DLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcchhHHHHHHHHHHcc
Confidence 467789999999999998743
No 312
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=22.23 E-value=84 Score=15.53 Aligned_cols=55 Identities=5% Similarity=-0.059 Sum_probs=34.0
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhHH----HHHHhchhcccccccchhhhhh
Q 042815 26 GVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV----TLMGIQPQNLWYYIDGQIDAWQ 82 (87)
Q Consensus 26 a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~----~~~~~m~~~~~~g~~~~~~~~~ 82 (87)
+.++-+++..-|+.|+.....=++.-|..-+.-.. ++...+... .|..|+..+.+
T Consensus 5 ~e~l~~el~~Fgi~c~d~v~eKl~ElC~~y~~~~~e~V~ew~Afs~s~--~~~~lt~~~L~ 63 (78)
T 4e2i_2 5 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTST--HKVGLTSEILN 63 (78)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHTHHHHSCCCHHHHHHHHTTHHHHT--TCCCCCTTTTT
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--CCCCCCHHHHH
Confidence 45677777788999888776666666665543222 444444444 36666665543
No 313
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=22.07 E-value=1.6e+02 Score=18.72 Aligned_cols=30 Identities=10% Similarity=-0.001 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHhcC---CchhHHHHHHHHHHcC
Q 042815 8 TTSSAMMLGLAKNG---KNGMGVELFMSIEKRG 37 (87)
Q Consensus 8 ~~~~~li~~~~~~g---~~~~a~~l~~~m~~~g 37 (87)
..+..|-..|.+.| +.++|++.|++-...|
T Consensus 177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g 209 (452)
T 3e4b_A 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRG 209 (452)
T ss_dssp THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC
Confidence 35666666677777 7777777777776666
No 314
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=21.99 E-value=1e+02 Score=19.13 Aligned_cols=41 Identities=17% Similarity=0.265 Sum_probs=24.3
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 29 LFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 29 l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
+++.+.+.|+.|..+++.=++..+++.=.++. ++|+.+...
T Consensus 215 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~e 257 (334)
T 2qq8_A 215 LFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRD 257 (334)
T ss_dssp HHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHc
Confidence 44555566777777776666666665444444 666655544
No 315
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=21.74 E-value=56 Score=15.91 Aligned_cols=17 Identities=0% Similarity=-0.148 Sum_probs=13.5
Q ss_pred HhcCCchhHHHHHHHHH
Q 042815 18 AKNGKNGMGVELFMSIE 34 (87)
Q Consensus 18 ~~~g~~~~a~~l~~~m~ 34 (87)
=+.|++++|+.+|.+-.
T Consensus 24 D~~g~y~eAl~~Y~~ai 40 (85)
T 2v6x_A 24 DTATQYEEAYTAYYNGL 40 (85)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 45789999999888754
No 316
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=21.33 E-value=54 Score=16.47 Aligned_cols=20 Identities=15% Similarity=0.054 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHcCCCCCHh
Q 042815 24 GMGVELFMSIEKRGPRPNAV 43 (87)
Q Consensus 24 ~~a~~l~~~m~~~g~~pd~~ 43 (87)
++..++...|...|+.|+..
T Consensus 59 ~Kl~~~~e~l~~~GI~~eeL 78 (86)
T 3nr7_A 59 RKLQQYREMLIADGIDPNEL 78 (86)
T ss_dssp HHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHH
Confidence 34556666777889988654
No 317
>2km6_A Nacht, LRR and PYD domains-containing protein 7; NLRP7, pyrin domain, innate immune system, NALP, ATP-binding mutation, leucine-rich repeat; NMR {Homo sapiens}
Probab=20.99 E-value=16 Score=19.06 Aligned_cols=24 Identities=8% Similarity=0.102 Sum_probs=14.2
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHH
Q 042815 11 SAMMLGLAKNGKNGMGVELFMSIE 34 (87)
Q Consensus 11 ~~li~~~~~~g~~~~a~~l~~~m~ 34 (87)
+-|+..|...+-++-+..+|++|-
T Consensus 58 ~lLv~~y~e~~A~~vt~~if~~mn 81 (106)
T 2km6_A 58 EILVNTSSENWIRNATVNILEEMN 81 (106)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCHHHHHHHHHHHHHHcC
Confidence 345555555556666666666664
No 318
>2bbz_A Viral CAsp8 and FADD-like apoptosis regulator; death effector domain, viral protein; 3.80A {Molluscum contagiosum virus subtype 1}
Probab=20.88 E-value=83 Score=19.14 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHcC-CCCCHhhHHHHHHHHcccchhH
Q 042815 24 GMGVELFMSIEKRG-PRPNAVTFVGVLTAYGKIKIFG 59 (87)
Q Consensus 24 ~~a~~l~~~m~~~g-~~pd~~t~~~ll~~~~~~~~~~ 59 (87)
..+.++|.+|.+.+ +.|+-..+ +-+.+-..++.+
T Consensus 134 ~s~LdlF~~LEk~~~L~~dNL~~--Le~iL~~I~R~D 168 (249)
T 2bbz_A 134 SRFVELVLALENVGLVSPSSVSV--LADMLRTLRRLD 168 (249)
T ss_dssp CCHHHHHHHHHHHTSCSTTCCHH--HHHHHTTTTCHH
T ss_pred CCHHHHHHHHHhhCCCCchhHHH--HHHHHHHcChHH
Confidence 38999999999776 55655554 334444444443
No 319
>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster}
Probab=20.67 E-value=62 Score=17.75 Aligned_cols=17 Identities=12% Similarity=0.040 Sum_probs=13.3
Q ss_pred HHHHHhcCCchhHHHHH
Q 042815 14 MLGLAKNGKNGMGVELF 30 (87)
Q Consensus 14 i~~~~~~g~~~~a~~l~ 30 (87)
|..+.+.|++++|..-+
T Consensus 7 I~~Ll~~g~~eeAf~~a 23 (139)
T 2vxg_A 7 IKQLLMAGQINKAFHQA 23 (139)
T ss_dssp HHHHHHHTCHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHH
Confidence 67788899999887643
No 320
>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A*
Probab=20.64 E-value=84 Score=21.97 Aligned_cols=21 Identities=10% Similarity=0.287 Sum_probs=19.1
Q ss_pred HHHHHHhcCCchhHHHHHHHH
Q 042815 13 MMLGLAKNGKNGMGVELFMSI 33 (87)
Q Consensus 13 li~~~~~~g~~~~a~~l~~~m 33 (87)
++.++++.|+.++|.++++.+
T Consensus 649 ~~~al~~~G~~d~A~~l~~~~ 669 (807)
T 1v7w_A 649 AWVAETKLGRGDRAMKFYDAL 669 (807)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHh
Confidence 567899999999999999987
No 321
>3v2d_U 50S ribosomal protein L20; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_O 2hgj_T 2hgq_T 2hgu_T 1vsa_O 2j03_U 2jl6_U 2jl8_U 2v47_U 2v49_U 2wdi_U 2wdj_U 2wdl_U 2wdn_U 2wh2_U 2wh4_U 2wrj_U 2wrl_U 2wro_U 2wrr_U ...
Probab=20.59 E-value=69 Score=17.18 Aligned_cols=13 Identities=8% Similarity=0.176 Sum_probs=7.4
Q ss_pred hHHHHHHHHcccc
Q 042815 44 TFVGVLTAYGKIK 56 (87)
Q Consensus 44 t~~~ll~~~~~~~ 56 (87)
+|+.+|.++.+.+
T Consensus 75 sYs~fi~gL~k~~ 87 (118)
T 3v2d_U 75 NYSTFIHGLKKAG 87 (118)
T ss_dssp CHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcC
Confidence 4666666655544
No 322
>1bol_A Protein (ribonuclease RH); ribonucleases, hydrolase; 2.00A {Rhizopus niveus} SCOP: d.124.1.1
Probab=20.45 E-value=1e+02 Score=18.00 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=12.3
Q ss_pred HHHcCCCCC-HhhHHHHHHHHc
Q 042815 33 IEKRGPRPN-AVTFVGVLTAYG 53 (87)
Q Consensus 33 m~~~g~~pd-~~t~~~ll~~~~ 53 (87)
+...||.|+ .++...+.++..
T Consensus 150 L~~~gI~P~~~yt~~~I~~Ai~ 171 (222)
T 1bol_A 150 FSSNGITPGGTYTATEMQSAIE 171 (222)
T ss_dssp HHTTTCCSSEEEEHHHHHHHHH
T ss_pred HHHcCCCCCCcCcHHHHHHHHH
Confidence 455788875 345555555544
No 323
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=20.44 E-value=98 Score=15.63 Aligned_cols=29 Identities=14% Similarity=0.010 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 042815 24 GMGVELFMSIEKRGPRPNAVTFVGVLTAY 52 (87)
Q Consensus 24 ~~a~~l~~~m~~~g~~pd~~t~~~ll~~~ 52 (87)
..|.+.|.++++.|..|....+-++-.+.
T Consensus 34 ~Ga~~ay~rL~~~~~~~c~~~L~aL~gAi 62 (93)
T 3bqs_A 34 VGSKEAFLRIWENDSSVCMSELYALEGAV 62 (93)
T ss_dssp HHHHHHHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 45788999999888888887666654444
No 324
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=20.44 E-value=85 Score=17.01 Aligned_cols=47 Identities=11% Similarity=-0.012 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHcCCCCCHhhHHHHHHHHcccchhH
Q 042815 10 SSAMMLGLAKNGKNGMGVELFMSIEKRGPRPNAVTFVGVLTAYGKIKIFG 59 (87)
Q Consensus 10 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~ 59 (87)
|.--|..-+..|+.+-|.+|++-..+.| +...|.+.|-.|-..=+++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpD 81 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPD 81 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChH
Confidence 4445666677899999999999988777 6677888887777665554
No 325
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=20.32 E-value=1.1e+02 Score=18.78 Aligned_cols=41 Identities=15% Similarity=0.172 Sum_probs=21.9
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHcccchhHH--HHHHhchhc
Q 042815 29 LFMSIEKRGPRPNAVTFVGVLTAYGKIKIFGV--TLMGIQPQN 69 (87)
Q Consensus 29 l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~--~~~~~m~~~ 69 (87)
++..+.+.|+.|..+++.-++..+++.=.++. ++|+.....
T Consensus 210 L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~ 252 (331)
T 3qye_A 210 LYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQ 252 (331)
T ss_dssp HHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHC
Confidence 44455555666666666655555555433433 555554443
Done!