BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042816
(163 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YNU|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With
L-Vinylglycine
Length = 473
Score = 154 bits (390), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 102/153 (66%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
DL LPGFR+ IYS ++ V+AAA K++ F VS+ +Q+LL +MLSD K + +I N +R
Sbjct: 274 DLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKR 333
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
L++ K V+GL++ GI C N G +CW DM L+ S + + E+ELW K++ +N++
Sbjct: 334 LKQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNIS 393
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIR 153
PGSSCHC EPGWF F L E+ + + M+R++
Sbjct: 394 PGSSCHCTEPGWFRVCFANLPERTLDLAMQRLK 426
>pdb|1M7Y|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L-
Aminoethoxyvinylglycine
pdb|1M4N|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With
[2-(Amino-
Oxy)ethyl](5'-Deoxyadenosin-5'-Yl)(Methyl)sulfonium
Length = 435
Score = 154 bits (390), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 102/153 (66%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
DL LPGFR+ IYS ++ V+AAA K++ F VS+ +Q+LL +MLSD K + +I N +R
Sbjct: 274 DLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKR 333
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
L++ K V+GL++ GI C N G +CW DM L+ S + + E+ELW K++ +N++
Sbjct: 334 LKQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNIS 393
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIR 153
PGSSCHC EPGWF F L E+ + + M+R++
Sbjct: 394 PGSSCHCTEPGWFRVCFANLPERTLDLAMQRLK 426
>pdb|1B8G|A Chain A, 1-aminocyclopropane-1-carboxylate Synthase
pdb|1B8G|B Chain B, 1-aminocyclopropane-1-carboxylate Synthase
Length = 429
Score = 154 bits (390), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 102/153 (66%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
DL LPGFR+ IYS ++ V+AAA K++ F VS+ +Q+LL +MLSD K + +I N +R
Sbjct: 272 DLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKR 331
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
L++ K V+GL++ GI C N G +CW DM L+ S + + E+ELW K++ +N++
Sbjct: 332 LKQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNIS 391
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIR 153
PGSSCHC EPGWF F L E+ + + M+R++
Sbjct: 392 PGSSCHCTEPGWFRVCFANLPERTLDLAMQRLK 424
>pdb|3PIU|A Chain A, High-Resolution Structure Of Native Malus Domestica Acc
Synthase
Length = 410
Score = 154 bits (389), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 102/153 (66%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
DL LPGFR+ IYS ++ V+AAA K++ F VS+ +Q+LL +MLSD K + +I N +R
Sbjct: 251 DLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKR 310
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
L++ K V+GL++ GI C N G +CW DM L+ S + + E+ELW K++ +N++
Sbjct: 311 LKQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNIS 370
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIR 153
PGSSCHC EPGWF F L E+ + + M+R++
Sbjct: 371 PGSSCHCTEPGWFRVCFANLPERTLDLAMQRLK 403
>pdb|1IAX|A Chain A, Crystal Structure Of Acc Synthase Complexed With Plp
pdb|1IAX|B Chain B, Crystal Structure Of Acc Synthase Complexed With Plp
pdb|1IAY|A Chain A, Crystal Structure Of Acc Synthase Complexed With Cofactor
Plp And Inhibitor Avg
Length = 428
Score = 141 bits (356), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 95/154 (61%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
D+ LPGFR+ +IYS+N+ V+ A+K++ F VS +Q L +MLSD KFV F+ + R
Sbjct: 269 DMGLPGFRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMR 328
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
L + + F GL +GI+C K+N G +CW D+ L+ + E+ LW ++N K+NV+
Sbjct: 329 LGKRHKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVS 388
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154
PGSS C EPGWF F + + + + + RIRR
Sbjct: 389 PGSSFECQEPGWFRVCFANMDDGTVDIALARIRR 422
>pdb|1V2D|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase
pdb|1V2E|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase
Complex With A-Keto-G-Methylthiobutyrate
pdb|1V2E|B Chain B, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase
Complex With A-Keto-G-Methylthiobutyrate
pdb|1V2F|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase
Complex With 3-Phenylpropionate
pdb|1V2F|B Chain B, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase
Complex With 3-Phenylpropionate
Length = 381
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 72/162 (44%), Gaps = 22/162 (13%)
Query: 6 GFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQK--FININRERLRR 63
G+R+ I + + +++S SAP+ L + K ++ F RE RR
Sbjct: 228 GYRVGWIVG-PKEFMPRLAGMRQWTSFSAPTP-LQAGVAEALKLARREGFYEALREGYRR 285
Query: 64 LYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWD--KLLNVAKVNVTP 121
GLR +G+ G ++ A++ G WD +L+ A+V + P
Sbjct: 286 RRDLLAGGLRAMGLRVYVPEGTYFLMAELPG-------------WDAFRLVEEARVALIP 332
Query: 122 GSSCHCIEP--GWFSFSFTLLTEKDIHVVMERIRRISQTCKS 161
S+ + +P F F+F TE+++H+ +ER+ R+ + +
Sbjct: 333 ASAFYLEDPPKDLFRFAFCK-TEEELHLALERLGRVVNSPRE 373
>pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus
pdb|1BJW|B Chain B, Aspartate Aminotransferase From Thermus Thermophilus
Length = 382
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 14/137 (10%)
Query: 24 KKLARFSSVSAPSQNLL-----VSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78
K +A SS S S + + + L++ + + F+ + RE RR + GL LG++
Sbjct: 254 KAMASVSSQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLK 313
Query: 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT 138
+ +G FY D S + E+ ++LL A V V PG+ G S+
Sbjct: 314 AVRPSGAFYVLMDTSPIAPD-----EVRAAERLLE-AGVAVVPGTDFAAF--GHVRLSYA 365
Query: 139 LLTEKDIHVVMERIRRI 155
+E+++ +ER R+
Sbjct: 366 -TSEENLRKALERFARV 381
>pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|B Chain B, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|C Chain C, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|D Chain D, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
Length = 385
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 14/137 (10%)
Query: 24 KKLARFSSVSAPSQNLL-----VSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78
K +A SS S S + + + L++ + + F+ + RE RR + GL LG++
Sbjct: 254 KAMASVSSQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLK 313
Query: 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT 138
+ +G FY D S + E+ ++LL A V V PG+ G S+
Sbjct: 314 AVRPSGAFYVLMDTSPIAPD-----EVRAAERLLE-AGVAVVPGTDFAAF--GHVRLSYA 365
Query: 139 LLTEKDIHVVMERIRRI 155
+E+++ +ER R+
Sbjct: 366 -TSEENLRKALERFARV 381
>pdb|1B5O|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Single
Mutant 1
pdb|1B5O|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Single
Mutant 1
Length = 385
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 14/137 (10%)
Query: 24 KKLARFSSVSAPSQNLL-----VSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78
K +A SS S S + + + L++ + + F+ + RE RR + GL LG++
Sbjct: 254 KAMASVSSQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLK 313
Query: 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT 138
+ +G FY D S + E+ ++LL A V V PG+ G S+
Sbjct: 314 AVRPSGAFYVLMDTSPIAPD-----EVRAAERLLE-AGVAVVPGTDFAAF--GHVRLSYA 365
Query: 139 LLTEKDIHVVMERIRRI 155
+E+++ +ER R+
Sbjct: 366 -TSEENLRKALERFARV 381
>pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1 Complexed With Aspartate
pdb|1GCK|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1 Complexed With Aspartate
pdb|1B5P|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1
pdb|1B5P|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1
Length = 385
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 11/141 (7%)
Query: 17 NSVLAAAKKLARFSSVSAPS--QNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ 74
V+ A ++R S+ S + Q + L++ + + F+ + RE RR + GL
Sbjct: 250 KEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTA 309
Query: 75 LGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFS 134
LG++ + +G FY D S + E+ ++LL A V V PG+ G
Sbjct: 310 LGLKAVRPSGAFYVLMDTSPIAPD-----EVRAAERLLE-AGVAVVPGTDFAAF--GHVR 361
Query: 135 FSFTLLTEKDIHVVMERIRRI 155
S+ +E+++ +ER R+
Sbjct: 362 LSYA-TSEENLRKALERFARV 381
>pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|E Chain E, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|F Chain F, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|G Chain G, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|H Chain H, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC4|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|5BJ4|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2
pdb|5BJ4|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2
Length = 385
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 11/141 (7%)
Query: 17 NSVLAAAKKLARFSSVSAPS--QNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ 74
V+ A ++R S+ S + Q + L++ + + F+ + RE RR + GL
Sbjct: 250 KEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTA 309
Query: 75 LGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFS 134
LG++ + +G FY D S + E+ ++LL A V V PG+ G
Sbjct: 310 LGLKAVRPSGAFYVLMDTSPIAPD-----EVRAAERLLE-AGVAVVPGTDFAAF--GHVR 361
Query: 135 FSFTLLTEKDIHVVMERIRRI 155
S+ +E+++ +ER R+
Sbjct: 362 LSYA-TSEENLRKALERFARV 381
>pdb|5BJ3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
pdb|5BJ3|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
pdb|5BJ3|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
pdb|5BJ3|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
Length = 385
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 11/141 (7%)
Query: 17 NSVLAAAKKLARFSSVSAPS--QNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ 74
V+ A ++R S+ S + Q + L++ + + F+ + RE RR + GL
Sbjct: 250 KEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTA 309
Query: 75 LGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFS 134
LG++ + +G FY D S + E+ ++LL A V V PG+ G
Sbjct: 310 LGLKAVRPSGAFYVLMDTSPIAPD-----EVRAAERLLE-AGVAVVPGTDFAAF--GHVR 361
Query: 135 FSFTLLTEKDIHVVMERIRRI 155
S+ +E+++ +ER R+
Sbjct: 362 LSYA-TSEENLRKALERFARV 381
>pdb|2X5D|A Chain A, Crystal Structure Of A Probable Aminotransferase From
Pseudomonas Aeruginosa
pdb|2X5D|B Chain B, Crystal Structure Of A Probable Aminotransferase From
Pseudomonas Aeruginosa
pdb|2X5D|C Chain C, Crystal Structure Of A Probable Aminotransferase From
Pseudomonas Aeruginosa
pdb|2X5D|D Chain D, Crystal Structure Of A Probable Aminotransferase From
Pseudomonas Aeruginosa
Length = 412
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Query: 18 SVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGI 77
S LA K + + + + ++ D + V+ +I R+ +R V V GLR+ G
Sbjct: 265 SALARIKSYHDYGTFTPLQVAAIAALEGDQQCVR---DIARQYQQRRDV-LVKGLREAGW 320
Query: 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPG 122
Y WA + Y+ G LE KLL AKV+V+PG
Sbjct: 321 MVENPKASMYVWAKIP---EPYAHLGSLEFAKKLLQDAKVSVSPG 362
>pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From
Pyrococcus Horikoshii Ot3
pdb|1DJU|B Chain B, Crystal Structure Of Aromatic Aminotransferase From
Pyrococcus Horikoshii Ot3
Length = 388
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 72 LRQLGIECAKSNGGFYCWADM--SGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIE 129
L ++G+ K G FY + + +GL S + + +L A+V V PGS+
Sbjct: 304 LNEMGLPTVKPKGAFYIFPRIRDTGLTSK-------KFSELMLKEARVAVVPGSAFGKAG 356
Query: 130 PGWFSFSFTLLTEKDIHVVMERIRRISQTCK 160
G+ S+ EK + MER+ R+ + K
Sbjct: 357 EGYVRISYATAYEK-LEEAMERMERVLKERK 386
>pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-form
pdb|1GDE|B Chain B, Crystal Structure Of Pyrococcus Protein A-1 E-form
pdb|1GD9|A Chain A, Crystall Structure Of Pyrococcus Protein-A1
pdb|1GD9|B Chain B, Crystall Structure Of Pyrococcus Protein-A1
Length = 389
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 72 LRQLGIECAKSNGGFYCWADM--SGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIE 129
L ++G+ K G FY + + +GL S + + +L A+V V PGS+
Sbjct: 305 LNEMGLPTVKPKGAFYIFPRIRDTGLTSK-------KFSELMLKEARVAVVPGSAFGKAG 357
Query: 130 PGWFSFSFTLLTEKDIHVVMERIRRISQTCK 160
G+ S+ EK + M+R+ R+ + K
Sbjct: 358 EGYVRISYATAYEK-LEEAMDRMERVLKERK 387
>pdb|3ELE|A Chain A, Crystal Structure Of Amino Transferase (rer070207001803)
From Eubacterium Rectale At 2.10 A Resolution
pdb|3ELE|B Chain B, Crystal Structure Of Amino Transferase (rer070207001803)
From Eubacterium Rectale At 2.10 A Resolution
pdb|3ELE|C Chain C, Crystal Structure Of Amino Transferase (rer070207001803)
From Eubacterium Rectale At 2.10 A Resolution
pdb|3ELE|D Chain D, Crystal Structure Of Amino Transferase (rer070207001803)
From Eubacterium Rectale At 2.10 A Resolution
Length = 398
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 62/152 (40%), Gaps = 24/152 (15%)
Query: 2 LSLPGFRISVIYS----YNNSVLAAAKKLA--RFSSVSAPSQNLLVSMLSDTKFVQKFIN 55
LSLPG RI + Y+ + L AA A V APS L + + IN
Sbjct: 250 LSLPGERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPS--LFQKXIVKCQGATGDIN 307
Query: 56 INRERLRRLYVKFVAGLRQLGIECAKSNGGFYCWAD-MSGLISSYSEKGELELWDKLLNV 114
+E LY GL ++G C K +G FY + + +++ EK + E D L+
Sbjct: 308 AYKENRDLLY----EGLTRIGYHCFKPDGAFYXFVKALEDDSNAFCEKAKEE--DVLIVA 361
Query: 115 AKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIH 146
A G C PGW S+ + E H
Sbjct: 362 AD-----GFGC----PGWVRISYCVDREXIKH 384
>pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum
pdb|1J32|B Chain B, Aspartate Aminotransferase From Phormidium Lapideum
Length = 388
Score = 30.0 bits (66), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 11/105 (10%)
Query: 50 VQKFININRERLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWD 109
VQ+ + ER R + A G+EC K +G FY + + + + + L+
Sbjct: 289 VQEMLAAFAERRRYMLDALNA---MPGLECPKPDGAFYMFPSI-----AKTGRSSLDFCS 340
Query: 110 KLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154
+LL+ +V PG++ + S++ L T I MER+ +
Sbjct: 341 ELLDQHQVATVPGAAFGADDCIRLSYATDLDT---IKRGMERLEK 382
>pdb|1KPI|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa2 Complexed With Sah And Dddmab
pdb|3HEM|A Chain A, Structure Of Mycobacterium Tuberculosis Mycolic Acid
Cyclopropane Synthase Cmaa2 In Complex With Dioctylamine
Length = 302
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 81 KSNGGFYCWADMSGLIS-SYSEKGELELWD-----KLLNVAKVNVTPGSSCHCIEPGWFS 134
KSN F W D S S +Y E+ ++ L + + L + K+N+ PG + I GW S
Sbjct: 26 KSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGS 85
Query: 135 FSFTLLTEKDIHVV 148
+ E D++V+
Sbjct: 86 TMRHAVAEYDVNVI 99
>pdb|3E2F|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase
Iii, Plp-Bound Form
pdb|3E2F|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase
Iii, Plp-Bound Form
pdb|3E2Z|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii
In Complex With Kynurenine
pdb|2ZJG|A Chain A, Crystal Structural Of Mouse Kynurenine Aminotransferase
Iii
pdb|2ZJG|B Chain B, Crystal Structural Of Mouse Kynurenine Aminotransferase
Iii
Length = 410
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 50 VQKFININRERLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWD 109
+ K + + R+R+ RL L +G++ +GG++ AD+S L + S+ E +D
Sbjct: 302 LPKELEVKRDRMVRL-------LNSVGLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYD 354
>pdb|3E2Z|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii
In Complex With Kynurenine
pdb|3E2Y|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii
In Complex With Glutamine
pdb|3E2Y|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii
In Complex With Glutamine
Length = 410
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 50 VQKFININRERLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWD 109
+ K + + R+R+ RL L +G++ +GG++ AD+S L + S+ E +D
Sbjct: 302 LPKELEVKRDRMVRL-------LNSVGLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYD 354
>pdb|2YZ7|A Chain A, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|2YZ7|B Chain B, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|2YZ7|C Chain C, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|2YZ7|D Chain D, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|2YZ7|E Chain E, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|2YZ7|F Chain F, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|2YZ7|G Chain G, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|2YZ7|H Chain H, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|3VDR|A Chain A, Crystal Structure Of D-3-Hydroxybutyrate Dehydrogenase,
Prepared In The Presence Of The Substrate
D-3-Hydroxybutyrate And Nad(+)
pdb|3VDR|B Chain B, Crystal Structure Of D-3-Hydroxybutyrate Dehydrogenase,
Prepared In The Presence Of The Substrate
D-3-Hydroxybutyrate And Nad(+)
pdb|3VDR|C Chain C, Crystal Structure Of D-3-Hydroxybutyrate Dehydrogenase,
Prepared In The Presence Of The Substrate
D-3-Hydroxybutyrate And Nad(+)
pdb|3VDR|D Chain D, Crystal Structure Of D-3-Hydroxybutyrate Dehydrogenase,
Prepared In The Presence Of The Substrate
D-3-Hydroxybutyrate And Nad(+)
pdb|3VDQ|A Chain A, Crystal Structure Of Alcaligenes Faecalis
D-3-Hydroxybutyrate Dehydrogenase In Complex With Nad(+)
And Acetate
pdb|3VDQ|B Chain B, Crystal Structure Of Alcaligenes Faecalis
D-3-Hydroxybutyrate Dehydrogenase In Complex With Nad(+)
And Acetate
pdb|3VDQ|C Chain C, Crystal Structure Of Alcaligenes Faecalis
D-3-Hydroxybutyrate Dehydrogenase In Complex With Nad(+)
And Acetate
pdb|3VDQ|D Chain D, Crystal Structure Of Alcaligenes Faecalis
D-3-Hydroxybutyrate Dehydrogenase In Complex With Nad(+)
And Acetate
Length = 260
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 90 ADMSGLISSYSEKGELELWDKLLNVAKV----NVTPGSSCHCIEPGWFSFSFTLLTEKDI 145
A GL++S ++ + ++ + KV N G +C+ I PGW T L EK I
Sbjct: 141 ASAHGLVASVNKSAYVAAKHGVVGLTKVTALENAGKGITCNAICPGWVR---TPLVEKQI 197
Query: 146 HVVMER 151
+ ++
Sbjct: 198 EAISQQ 203
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,331,355
Number of Sequences: 62578
Number of extensions: 155559
Number of successful extensions: 432
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 418
Number of HSP's gapped (non-prelim): 25
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)