Query 042816
Match_columns 163
No_of_seqs 117 out of 1355
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 09:47:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042816.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042816hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02607 1-aminocyclopropane-1 100.0 8.8E-30 1.9E-34 198.7 20.0 163 1-163 280-442 (447)
2 COG0436 Aspartate/tyrosine/aro 100.0 2.3E-29 4.9E-34 193.3 17.5 151 1-159 237-392 (393)
3 PLN02376 1-aminocyclopropane-1 100.0 1.5E-28 3.2E-33 193.8 20.5 160 1-160 280-440 (496)
4 PLN02450 1-aminocyclopropane-1 100.0 5.4E-28 1.2E-32 189.7 20.0 160 1-160 273-432 (468)
5 KOG0256 1-aminocyclopropane-1- 100.0 5.4E-27 1.2E-31 174.5 18.7 160 1-160 304-463 (471)
6 PLN00175 aminotransferase fami 99.9 2.5E-26 5.5E-31 178.0 16.8 147 1-157 260-412 (413)
7 PRK09148 aminotransferase; Val 99.9 6.4E-26 1.4E-30 175.4 17.8 153 1-161 239-393 (405)
8 PRK07682 hypothetical protein; 99.9 2.3E-26 5.1E-31 176.4 14.9 149 1-160 227-378 (378)
9 PRK08636 aspartate aminotransf 99.9 8.1E-26 1.8E-30 174.7 17.8 152 1-160 249-402 (403)
10 PRK05957 aspartate aminotransf 99.9 1.1E-25 2.5E-30 173.2 18.3 149 1-159 234-386 (389)
11 PRK06207 aspartate aminotransf 99.9 1.1E-25 2.3E-30 174.2 17.7 150 1-160 252-404 (405)
12 PRK07681 aspartate aminotransf 99.9 1.1E-25 2.3E-30 173.9 17.7 143 1-154 240-384 (399)
13 PRK15481 transcriptional regul 99.9 1.3E-25 2.8E-30 175.0 17.3 145 1-157 283-430 (431)
14 PRK07683 aminotransferase A; V 99.9 1.9E-25 4.1E-30 171.9 17.9 151 1-161 234-386 (387)
15 PRK06348 aspartate aminotransf 99.9 2.2E-25 4.7E-30 171.4 17.0 144 1-155 235-382 (384)
16 PRK06855 aminotransferase; Val 99.9 3.7E-25 7.9E-30 172.5 18.4 157 1-159 244-430 (433)
17 PRK06107 aspartate aminotransf 99.9 2.3E-25 4.9E-30 172.2 16.9 152 1-159 242-401 (402)
18 PRK07309 aromatic amino acid a 99.9 4.1E-25 8.8E-30 170.3 18.2 151 1-160 238-390 (391)
19 PRK08068 transaminase; Reviewe 99.9 3E-25 6.5E-30 170.9 17.2 143 1-154 241-385 (389)
20 PRK07324 transaminase; Validat 99.9 5.4E-25 1.2E-29 168.7 18.0 146 1-159 223-371 (373)
21 PRK09082 methionine aminotrans 99.9 1.4E-25 2.9E-30 172.6 14.1 145 1-154 237-385 (386)
22 PRK08361 aspartate aminotransf 99.9 2.4E-25 5.3E-30 171.5 14.8 149 1-158 238-390 (391)
23 TIGR03540 DapC_direct LL-diami 99.9 7.8E-25 1.7E-29 168.2 17.1 143 1-154 238-382 (383)
24 COG1167 ARO8 Transcriptional r 99.9 8.7E-25 1.9E-29 171.1 17.5 148 4-160 302-457 (459)
25 PRK07366 succinyldiaminopimela 99.9 4.5E-25 9.7E-30 169.8 15.6 146 1-155 240-387 (388)
26 PRK09276 LL-diaminopimelate am 99.9 8.2E-25 1.8E-29 168.2 16.7 143 1-154 240-384 (385)
27 PRK08175 aminotransferase; Val 99.9 1E-24 2.2E-29 168.2 16.8 150 1-158 238-389 (395)
28 PRK08960 hypothetical protein; 99.9 1.5E-24 3.3E-29 166.9 17.4 148 1-157 235-386 (387)
29 PRK05942 aspartate aminotransf 99.9 1E-24 2.2E-29 168.2 16.4 145 1-156 244-390 (394)
30 PRK07590 L,L-diaminopimelate a 99.9 1.3E-24 2.9E-29 168.3 16.9 145 1-155 250-408 (409)
31 PRK12414 putative aminotransfe 99.9 1.8E-24 3.8E-29 166.4 16.7 144 1-154 236-383 (384)
32 PLN00145 tyrosine/nicotianamin 99.9 3E-24 6.5E-29 167.2 18.2 156 1-162 263-428 (430)
33 PRK08912 hypothetical protein; 99.9 2.3E-24 5E-29 165.8 17.0 150 1-158 233-386 (387)
34 PLN02656 tyrosine transaminase 99.9 3.7E-24 8.1E-29 165.8 18.1 155 1-161 242-406 (409)
35 PRK09440 avtA valine--pyruvate 99.9 3.6E-24 7.7E-29 166.2 17.9 151 2-162 250-415 (416)
36 PRK06108 aspartate aminotransf 99.9 2.7E-24 5.8E-29 165.1 16.9 146 1-157 233-381 (382)
37 PTZ00433 tyrosine aminotransfe 99.9 6.3E-24 1.4E-28 164.7 18.0 154 1-161 250-411 (412)
38 PTZ00377 alanine aminotransfer 99.9 9.3E-24 2E-28 166.5 19.2 158 2-160 302-477 (481)
39 TIGR03542 DAPAT_plant LL-diami 99.9 5.1E-24 1.1E-28 164.7 17.2 145 1-155 247-401 (402)
40 PRK07568 aspartate aminotransf 99.9 7.8E-24 1.7E-28 163.3 17.9 150 1-161 236-395 (397)
41 PRK09147 succinyldiaminopimela 99.9 6.8E-24 1.5E-28 163.7 17.2 142 1-157 246-395 (396)
42 PRK07337 aminotransferase; Val 99.9 6.7E-24 1.4E-28 163.3 17.0 151 1-156 233-387 (388)
43 TIGR01264 tyr_amTase_E tyrosin 99.9 8.2E-24 1.8E-28 163.5 17.3 152 1-159 241-400 (401)
44 PRK07777 aminotransferase; Val 99.9 6.5E-24 1.4E-28 163.3 16.6 148 1-157 233-385 (387)
45 PRK13355 bifunctional HTH-doma 99.9 1.1E-23 2.4E-28 167.4 18.0 156 1-160 354-516 (517)
46 PLN02187 rooty/superroot1 99.9 1.2E-23 2.6E-28 165.0 17.9 156 1-162 277-442 (462)
47 PRK07865 N-succinyldiaminopime 99.9 1.3E-23 2.7E-28 160.6 17.6 138 1-153 224-363 (364)
48 TIGR01265 tyr_nico_aTase tyros 99.9 1.6E-23 3.4E-28 162.0 17.5 153 1-159 242-402 (403)
49 TIGR03538 DapC_gpp succinyldia 99.9 1.4E-23 3E-28 161.8 17.2 140 1-155 245-392 (393)
50 PLN00143 tyrosine/nicotianamin 99.9 2.9E-23 6.3E-28 160.8 18.0 157 1-163 243-409 (409)
51 TIGR03539 DapC_actino succinyl 99.9 4.7E-23 1E-27 157.1 17.9 136 2-152 219-356 (357)
52 TIGR03537 DapC succinyldiamino 99.9 2.4E-23 5.1E-28 158.3 16.1 141 1-154 207-349 (350)
53 PRK08363 alanine aminotransfer 99.9 4.6E-23 9.9E-28 159.2 17.8 151 1-159 238-395 (398)
54 PRK05839 hypothetical protein; 99.9 4.4E-23 9.5E-28 158.2 17.1 137 1-157 233-373 (374)
55 PRK05764 aspartate aminotransf 99.9 8.3E-23 1.8E-27 157.4 18.3 152 1-160 239-393 (393)
56 PRK09275 aspartate aminotransf 99.9 1.2E-23 2.7E-28 165.8 13.8 155 1-161 312-520 (527)
57 PLN02231 alanine transaminase 99.9 9.4E-23 2E-27 162.0 18.5 156 2-159 354-528 (534)
58 PRK07550 hypothetical protein; 99.9 1.6E-22 3.4E-27 155.6 17.2 144 1-155 237-384 (386)
59 PRK07392 threonine-phosphate d 99.9 1.8E-22 3.9E-27 154.0 16.9 137 1-152 217-356 (360)
60 PRK09265 aminotransferase AlaT 99.9 3.2E-22 6.9E-27 154.8 18.3 156 1-160 241-403 (404)
61 PF00155 Aminotran_1_2: Aminot 99.9 3.2E-23 6.8E-28 158.0 12.2 142 1-152 222-363 (363)
62 PLN02672 methionine S-methyltr 99.9 1.3E-22 2.8E-27 169.2 16.7 153 1-157 911-1079(1082)
63 PRK08637 hypothetical protein; 99.9 2.8E-22 6E-27 154.4 17.5 146 1-160 228-388 (388)
64 PRK06358 threonine-phosphate d 99.9 2.3E-22 5E-27 153.2 16.3 139 1-156 214-353 (354)
65 PRK07908 hypothetical protein; 99.9 3.6E-22 7.8E-27 151.8 17.1 142 1-157 205-346 (349)
66 PRK06290 aspartate aminotransf 99.9 3.3E-22 7.1E-27 155.0 16.6 150 1-159 252-406 (410)
67 COG1168 MalY Bifunctional PLP- 99.9 2.9E-22 6.3E-27 148.6 15.2 150 1-159 233-387 (388)
68 TIGR03801 asp_4_decarbox aspar 99.9 1.9E-22 4.2E-27 158.9 14.4 155 1-161 311-519 (521)
69 PRK06425 histidinol-phosphate 99.9 5.5E-22 1.2E-26 149.9 16.1 138 1-156 194-331 (332)
70 PRK04781 histidinol-phosphate 99.9 9.5E-22 2.1E-26 150.3 16.8 140 1-156 221-361 (364)
71 KOG0259 Tyrosine aminotransfer 99.9 1E-21 2.2E-26 145.5 16.0 154 2-161 273-436 (447)
72 PRK08056 threonine-phosphate d 99.9 1.2E-21 2.5E-26 149.4 16.4 140 1-156 213-353 (356)
73 PRK02610 histidinol-phosphate 99.9 2.3E-21 5.1E-26 148.6 16.8 137 1-159 235-372 (374)
74 PRK03158 histidinol-phosphate 99.9 1.2E-21 2.7E-26 149.3 15.0 136 1-155 223-358 (359)
75 PRK14809 histidinol-phosphate 99.9 2.4E-21 5.1E-26 147.7 15.5 134 1-157 223-356 (357)
76 PRK06959 putative threonine-ph 99.9 6.1E-21 1.3E-25 144.6 17.3 138 1-161 199-336 (339)
77 KOG0257 Kynurenine aminotransf 99.9 1.6E-22 3.6E-27 151.3 8.4 152 1-154 246-415 (420)
78 PRK05166 histidinol-phosphate 99.9 5.6E-21 1.2E-25 146.4 16.9 137 1-155 232-368 (371)
79 PLN03026 histidinol-phosphate 99.9 5.4E-21 1.2E-25 146.9 16.8 137 1-154 241-378 (380)
80 PRK06836 aspartate aminotransf 99.9 8.7E-21 1.9E-25 146.4 17.2 140 1-160 245-393 (394)
81 KOG0634 Aromatic amino acid am 99.9 7.1E-21 1.5E-25 142.9 15.9 155 4-161 298-469 (472)
82 PRK01533 histidinol-phosphate 99.9 3.1E-21 6.8E-26 147.5 13.1 138 1-163 223-360 (366)
83 PRK02731 histidinol-phosphate 99.9 1.9E-20 4.2E-25 143.1 17.3 140 1-157 226-365 (367)
84 PRK08153 histidinol-phosphate 99.9 3E-20 6.6E-25 142.3 17.4 144 1-161 224-368 (369)
85 PRK06225 aspartate aminotransf 99.9 5.1E-20 1.1E-24 141.4 18.5 151 1-162 226-380 (380)
86 PLN02397 aspartate transaminas 99.9 4.9E-20 1.1E-24 143.4 17.6 136 1-157 270-420 (423)
87 TIGR01140 L_thr_O3P_dcar L-thr 99.9 2.5E-20 5.3E-25 140.8 14.0 134 1-152 195-329 (330)
88 PTZ00376 aspartate aminotransf 99.8 7.4E-20 1.6E-24 141.7 16.6 135 1-157 252-402 (404)
89 PRK00950 histidinol-phosphate 99.8 4.2E-20 9.2E-25 140.9 14.9 137 1-156 224-360 (361)
90 PRK04870 histidinol-phosphate 99.8 2.1E-20 4.6E-25 142.4 13.2 136 2-155 219-355 (356)
91 COG0079 HisC Histidinol-phosph 99.8 1.5E-19 3.2E-24 137.3 16.8 141 1-158 213-354 (356)
92 PRK05664 threonine-phosphate d 99.8 4.7E-19 1E-23 133.9 16.9 132 1-156 193-326 (330)
93 PRK05387 histidinol-phosphate 99.8 3.2E-19 6.9E-24 135.7 16.0 139 1-157 211-352 (353)
94 PRK01688 histidinol-phosphate 99.8 4.8E-20 1E-24 140.3 11.3 136 1-152 214-350 (351)
95 PRK09105 putative aminotransfe 99.8 4.6E-19 9.9E-24 135.8 16.8 135 1-156 234-368 (370)
96 PRK14807 histidinol-phosphate 99.8 3.1E-19 6.8E-24 135.8 15.5 135 1-155 214-349 (351)
97 PRK09257 aromatic amino acid a 99.8 5.1E-19 1.1E-23 136.6 16.6 134 1-155 247-395 (396)
98 PRK14808 histidinol-phosphate 99.8 9.1E-19 2E-23 132.6 15.9 131 1-154 203-333 (335)
99 COG3977 Alanine-alpha-ketoisov 99.8 1.7E-18 3.7E-23 125.3 15.1 151 2-160 250-413 (417)
100 TIGR01141 hisC histidinol-phos 99.8 1.1E-18 2.3E-23 132.5 14.5 133 2-152 212-345 (346)
101 PRK04635 histidinol-phosphate 99.8 6.4E-19 1.4E-23 134.3 13.2 136 1-154 215-351 (354)
102 PRK03317 histidinol-phosphate 99.8 1.5E-18 3.3E-23 132.8 14.9 136 1-158 229-364 (368)
103 PRK03321 putative aminotransfe 99.8 5.1E-18 1.1E-22 129.1 13.4 134 1-157 217-350 (352)
104 PRK03967 histidinol-phosphate 99.8 1.3E-17 2.7E-22 126.4 13.8 131 1-159 205-335 (337)
105 TIGR03576 pyridox_MJ0158 pyrid 99.8 4.3E-17 9.4E-22 123.8 15.5 135 3-155 205-344 (346)
106 PRK08354 putative aminotransfe 99.7 3.2E-16 7E-21 117.5 15.8 126 1-154 183-308 (311)
107 PF12897 Aminotran_MocR: Alani 99.7 4.3E-15 9.3E-20 111.2 14.4 145 4-157 257-414 (425)
108 PLN02368 alanine transaminase 99.6 2.4E-15 5.3E-20 116.5 10.3 94 1-94 292-397 (407)
109 cd00609 AAT_like Aspartate ami 99.6 4.1E-14 8.9E-19 106.9 16.7 140 2-153 206-349 (350)
110 PRK02627 acetylornithine amino 99.5 1.8E-13 3.9E-18 105.7 13.9 139 2-159 253-395 (396)
111 PRK08088 4-aminobutyrate amino 99.5 1.6E-13 3.6E-18 107.0 13.5 147 5-159 272-424 (425)
112 TIGR00707 argD acetylornithine 99.5 8.7E-13 1.9E-17 101.3 13.9 132 2-156 241-379 (379)
113 PRK05093 argD bifunctional N-s 99.5 9E-13 1.9E-17 102.2 13.3 140 2-159 255-401 (403)
114 PLN02483 serine palmitoyltrans 99.5 2.9E-12 6.2E-17 101.6 16.2 142 2-159 313-467 (489)
115 PRK06939 2-amino-3-ketobutyrat 99.5 2.5E-12 5.5E-17 99.2 15.3 142 5-160 247-395 (397)
116 PLN02822 serine palmitoyltrans 99.5 1.9E-12 4.1E-17 102.4 14.9 150 2-159 318-478 (481)
117 PRK01278 argD acetylornithine 99.5 2.5E-12 5.4E-17 99.3 14.1 136 5-159 248-389 (389)
118 KOG0633 Histidinol phosphate a 99.5 3.1E-12 6.7E-17 91.5 13.2 144 1-155 228-374 (375)
119 PRK02936 argD acetylornithine 99.4 3.4E-12 7.3E-17 98.1 13.1 133 2-156 238-377 (377)
120 PRK04260 acetylornithine amino 99.4 3.8E-12 8.2E-17 97.9 13.3 133 5-155 238-374 (375)
121 PRK13392 5-aminolevulinate syn 99.4 4.7E-12 1E-16 98.4 13.6 143 2-159 250-398 (410)
122 TIGR00858 bioF 8-amino-7-oxono 99.4 5.8E-12 1.3E-16 95.8 13.8 135 2-152 219-359 (360)
123 cd00378 SHMT Serine-glycine hy 99.4 1.2E-11 2.6E-16 95.8 13.8 147 4-158 226-385 (402)
124 PRK05958 8-amino-7-oxononanoat 99.4 2.4E-11 5.3E-16 93.3 14.5 138 2-155 241-384 (385)
125 PLN00144 acetylornithine trans 99.4 2.2E-11 4.8E-16 93.9 14.2 135 4-159 239-381 (382)
126 PRK10534 L-threonine aldolase; 99.4 2.9E-11 6.3E-16 91.5 14.3 125 8-157 202-332 (333)
127 TIGR01822 2am3keto_CoA 2-amino 99.4 4.5E-11 9.9E-16 92.3 15.2 143 4-160 242-391 (393)
128 PRK06918 4-aminobutyrate amino 99.4 4.7E-11 1E-15 93.9 15.4 149 2-161 290-446 (451)
129 PRK13238 tnaA tryptophanase/L- 99.4 2.3E-11 5E-16 95.7 13.5 150 3-158 255-433 (460)
130 TIGR00700 GABAtrnsam 4-aminobu 99.4 3.9E-11 8.5E-16 93.6 14.5 145 2-157 268-419 (420)
131 KOG0258 Alanine aminotransfera 99.3 2E-11 4.3E-16 91.6 11.5 152 2-157 299-468 (475)
132 TIGR02539 SepCysS Sep-tRNA:Cys 99.3 4.3E-11 9.3E-16 91.9 13.5 145 2-159 210-369 (370)
133 TIGR03301 PhnW-AepZ 2-aminoeth 99.3 6.8E-11 1.5E-15 89.9 14.4 141 3-155 191-354 (355)
134 PRK03244 argD acetylornithine 99.3 4.2E-11 9E-16 92.8 13.3 138 2-160 254-396 (398)
135 PRK04073 rocD ornithine--oxo-a 99.3 8.1E-11 1.7E-15 91.2 13.3 133 2-156 257-395 (396)
136 TIGR01821 5aminolev_synth 5-am 99.3 2.1E-10 4.5E-15 89.0 15.1 144 2-160 249-398 (402)
137 PRK09064 5-aminolevulinate syn 99.3 2.1E-10 4.6E-15 89.1 14.7 143 2-159 250-398 (407)
138 PRK13479 2-aminoethylphosphona 99.3 6.3E-10 1.4E-14 85.2 15.8 144 3-160 197-365 (368)
139 PTZ00125 ornithine aminotransf 99.2 3.8E-10 8.2E-15 87.4 14.3 144 2-162 249-399 (400)
140 TIGR01825 gly_Cac_T_rel pyrido 99.2 1.1E-09 2.4E-14 84.4 15.3 138 8-159 238-382 (385)
141 PF04864 Alliinase_C: Allinase 99.2 1.3E-10 2.7E-15 86.4 8.8 143 3-155 197-362 (363)
142 PRK06777 4-aminobutyrate amino 99.2 1.2E-09 2.7E-14 85.3 14.7 143 2-157 269-420 (421)
143 cd06451 AGAT_like Alanine-glyo 99.2 2E-09 4.3E-14 82.1 15.5 139 7-156 192-355 (356)
144 PRK13393 5-aminolevulinate syn 99.2 1.8E-09 3.8E-14 84.0 15.5 143 2-159 249-397 (406)
145 cd06454 KBL_like KBL_like; thi 99.2 1.3E-09 2.9E-14 82.7 14.4 136 8-155 207-348 (349)
146 TIGR02326 transamin_PhnW 2-ami 99.2 2.3E-09 5E-14 82.1 15.5 142 3-156 195-360 (363)
147 COG1448 TyrB Aspartate/tyrosin 99.2 1.6E-09 3.5E-14 81.4 13.7 133 1-155 247-395 (396)
148 PRK12381 bifunctional succinyl 99.1 2E-09 4.4E-14 83.7 14.0 140 5-161 256-402 (406)
149 cd00610 OAT_like Acetyl ornith 99.1 1.3E-09 2.9E-14 84.6 12.5 140 2-155 262-412 (413)
150 PRK10874 cysteine sulfinate de 99.1 3.7E-09 8.1E-14 81.9 14.1 145 2-159 224-399 (401)
151 PRK09792 4-aminobutyrate trans 99.1 4.3E-09 9.3E-14 82.2 14.0 141 5-157 271-420 (421)
152 PLN02721 threonine aldolase 99.1 6.6E-09 1.4E-13 79.0 14.5 133 8-158 213-352 (353)
153 TIGR00713 hemL glutamate-1-sem 99.1 3.5E-09 7.6E-14 82.7 12.8 147 2-159 265-423 (423)
154 PRK07179 hypothetical protein; 99.0 1.7E-08 3.7E-13 78.5 14.9 140 6-159 254-399 (407)
155 PRK00854 rocD ornithine--oxo-a 99.0 9.2E-09 2E-13 79.8 13.3 134 5-157 261-400 (401)
156 cd00617 Tnase_like Tryptophana 99.0 1.5E-08 3.3E-13 79.2 13.8 151 2-158 229-408 (431)
157 PRK00011 glyA serine hydroxyme 99.0 3.3E-08 7.1E-13 77.1 15.7 147 4-158 230-389 (416)
158 PRK00451 glycine dehydrogenase 99.0 4.7E-09 1E-13 82.6 11.0 140 2-156 270-446 (447)
159 TIGR03392 FeS_syn_CsdA cystein 99.0 2.4E-08 5.3E-13 77.3 14.7 145 2-159 221-396 (398)
160 PRK02948 cysteine desulfurase; 99.0 8.7E-09 1.9E-13 79.4 10.4 146 2-161 202-377 (381)
161 PRK08117 4-aminobutyrate amino 98.9 6.6E-08 1.4E-12 75.9 14.9 149 2-160 278-431 (433)
162 TIGR03246 arg_catab_astC succi 98.9 3.1E-08 6.8E-13 76.9 12.6 136 5-158 252-395 (397)
163 PLN02409 serine--glyoxylate am 98.9 1.2E-07 2.6E-12 73.7 15.5 147 2-160 203-374 (401)
164 PRK13520 L-tyrosine decarboxyl 98.9 1.9E-07 4E-12 71.6 15.4 138 2-157 221-370 (371)
165 PLN02624 ornithine-delta-amino 98.9 1.2E-07 2.6E-12 75.2 14.2 145 2-158 295-444 (474)
166 TIGR02407 ectoine_ectB diamino 98.9 1.1E-07 2.4E-12 74.2 13.7 137 6-158 269-412 (412)
167 PRK07505 hypothetical protein; 98.9 1.4E-07 3E-12 73.3 14.2 141 2-158 253-399 (402)
168 TIGR01979 sufS cysteine desulf 98.8 1.6E-07 3.4E-12 72.9 14.0 143 2-159 223-402 (403)
169 TIGR01885 Orn_aminotrans ornit 98.8 1.7E-07 3.6E-12 72.9 13.4 137 2-156 257-400 (401)
170 cd06502 TA_like Low-specificit 98.8 4.6E-07 9.9E-12 68.5 15.0 132 2-154 198-337 (338)
171 PRK07495 4-aminobutyrate amino 98.8 3.8E-07 8.2E-12 71.5 14.5 146 5-160 271-423 (425)
172 PRK08360 4-aminobutyrate amino 98.8 5.1E-07 1.1E-11 71.1 15.2 149 2-161 275-429 (443)
173 TIGR03812 tyr_de_CO2_Arch tyro 98.8 4.2E-07 9.2E-12 69.7 14.5 135 2-154 226-372 (373)
174 PRK06058 4-aminobutyrate amino 98.8 4.6E-07 1E-11 71.4 14.5 144 5-159 292-443 (443)
175 PRK08247 cystathionine gamma-s 98.7 8.6E-07 1.9E-11 68.2 14.2 138 5-159 203-365 (366)
176 cd00613 GDC-P Glycine cleavage 98.7 3.7E-07 7.9E-12 70.7 12.2 136 4-152 228-398 (398)
177 PRK04612 argD acetylornithine 98.7 1.2E-06 2.5E-11 68.4 14.4 138 5-160 260-405 (408)
178 cd06452 SepCysS Sep-tRNA:Cys-t 98.7 1.2E-06 2.5E-11 67.2 13.9 143 2-156 203-360 (361)
179 PRK09264 diaminobutyrate--2-ox 98.7 1.6E-06 3.4E-11 68.0 14.7 142 2-160 269-418 (425)
180 cd06453 SufS_like Cysteine des 98.6 6E-07 1.3E-11 68.9 11.5 135 7-152 206-373 (373)
181 TIGR01976 am_tr_V_VC1184 cyste 98.6 1.6E-06 3.4E-11 67.2 12.6 136 6-151 221-396 (397)
182 PRK00062 glutamate-1-semialdeh 98.6 1.7E-06 3.8E-11 67.8 12.3 144 5-159 269-425 (426)
183 PLN02855 Bifunctional selenocy 98.5 2.1E-06 4.5E-11 67.2 12.2 147 2-160 237-420 (424)
184 TIGR03403 nifS_epsilon cystein 98.5 2.6E-06 5.5E-11 65.8 12.5 121 30-161 236-378 (382)
185 PRK13580 serine hydroxymethylt 98.5 5.4E-06 1.2E-10 65.6 14.3 146 4-158 288-445 (493)
186 KOG1412 Aspartate aminotransfe 98.5 6.6E-06 1.4E-10 60.9 13.4 141 1-162 254-409 (410)
187 PRK09295 bifunctional cysteine 98.5 5.7E-06 1.2E-10 64.4 13.8 142 2-157 228-403 (406)
188 PLN02955 8-amino-7-oxononanoat 98.4 9.4E-06 2E-10 64.1 13.2 135 5-158 321-461 (476)
189 TIGR03402 FeS_nifS cysteine de 98.4 8.3E-06 1.8E-10 62.8 12.5 118 31-161 233-375 (379)
190 COG0156 BioF 7-keto-8-aminopel 98.4 2.7E-05 5.8E-10 60.1 14.2 134 9-155 248-387 (388)
191 PLN03227 serine palmitoyltrans 98.4 4E-05 8.6E-10 59.6 14.8 148 6-159 213-383 (392)
192 PLN02242 methionine gamma-lyas 98.3 7.1E-05 1.5E-09 58.7 15.6 143 2-160 225-417 (418)
193 PRK07049 methionine gamma-lyas 98.3 3.9E-05 8.4E-10 60.3 14.1 68 2-77 243-314 (427)
194 cd06450 DOPA_deC_like DOPA dec 98.3 5.6E-06 1.2E-10 62.8 8.1 109 35-154 232-344 (345)
195 PRK08593 4-aminobutyrate amino 98.2 0.00016 3.5E-09 57.2 15.4 148 5-161 280-432 (445)
196 KOG1360 5-aminolevulinate synt 98.2 0.00011 2.4E-09 56.3 13.0 138 9-159 379-525 (570)
197 TIGR01437 selA_rel uncharacter 98.2 4.9E-05 1.1E-09 58.5 11.4 137 4-155 211-362 (363)
198 TIGR01364 serC_1 phosphoserine 98.1 0.00027 5.9E-09 54.2 14.8 140 2-158 187-348 (349)
199 PRK09331 Sep-tRNA:Cys-tRNA syn 98.1 0.00014 2.9E-09 56.5 13.4 145 5-160 224-383 (387)
200 KOG1359 Glycine C-acetyltransf 98.1 0.00017 3.7E-09 53.3 12.3 140 4-160 265-414 (417)
201 PRK05964 adenosylmethionine--8 98.1 0.0002 4.4E-09 56.2 13.4 138 4-159 273-423 (423)
202 TIGR00709 dat 2,4-diaminobutyr 98.1 0.00021 4.5E-09 56.5 13.4 144 2-159 277-436 (442)
203 PRK06460 hypothetical protein; 98.1 0.00036 7.7E-09 54.0 14.4 64 6-75 198-261 (376)
204 PLN02452 phosphoserine transam 98.0 0.00036 7.9E-09 53.8 14.1 140 2-158 202-363 (365)
205 PRK07582 cystathionine gamma-l 98.0 0.0006 1.3E-08 52.6 15.3 134 3-158 197-365 (366)
206 TIGR01366 serC_3 phosphoserine 98.0 0.00062 1.3E-08 52.4 15.4 97 54-159 259-361 (361)
207 PRK05769 4-aminobutyrate amino 98.0 0.00039 8.4E-09 55.0 14.5 140 5-158 294-439 (441)
208 PRK05937 8-amino-7-oxononanoat 98.0 0.00034 7.5E-09 53.9 13.6 128 12-161 221-353 (370)
209 PRK13034 serine hydroxymethylt 98.0 0.00066 1.4E-08 53.2 14.7 98 55-158 285-392 (416)
210 PRK07678 aminotransferase; Val 97.9 0.0008 1.7E-08 53.4 14.4 150 7-160 289-451 (451)
211 PRK06767 methionine gamma-lyas 97.8 0.0016 3.5E-08 50.6 14.7 139 2-158 209-385 (386)
212 PRK03080 phosphoserine aminotr 97.8 0.0024 5.2E-08 49.5 15.5 101 54-161 270-376 (378)
213 PRK05968 hypothetical protein; 97.8 0.0022 4.7E-08 49.9 15.3 138 2-158 210-386 (389)
214 PTZ00094 serine hydroxymethylt 97.8 0.00077 1.7E-08 53.4 12.8 146 4-158 247-408 (452)
215 TIGR01977 am_tr_V_EF2568 cyste 97.8 0.00059 1.3E-08 52.4 11.4 93 55-154 269-375 (376)
216 PRK05639 4-aminobutyrate amino 97.7 0.0031 6.7E-08 50.2 14.9 144 6-160 296-445 (457)
217 PRK06541 hypothetical protein; 97.7 0.0024 5.1E-08 50.8 14.2 144 5-160 294-457 (460)
218 COG1104 NifS Cysteine sulfinat 97.7 0.0014 3.1E-08 50.4 12.2 121 31-162 238-381 (386)
219 PRK05355 3-phosphoserine/phosp 97.7 0.0023 4.9E-08 49.3 13.3 136 8-158 202-358 (360)
220 cd00614 CGS_like CGS_like: Cys 97.7 0.0031 6.7E-08 48.7 14.1 66 2-75 188-257 (369)
221 PRK11522 putrescine--2-oxoglut 97.7 0.0041 8.9E-08 49.5 14.8 137 7-161 307-454 (459)
222 COG0075 Serine-pyruvate aminot 97.6 0.0073 1.6E-07 46.7 14.6 120 31-160 242-365 (383)
223 PRK14012 cysteine desulfurase; 97.6 0.0017 3.7E-08 50.6 11.3 96 54-161 263-382 (404)
224 PF00266 Aminotran_5: Aminotra 97.5 0.0044 9.5E-08 47.7 13.1 132 3-147 204-370 (371)
225 TIGR03531 selenium_SpcS O-phos 97.5 0.003 6.5E-08 50.0 12.2 144 2-155 275-443 (444)
226 PLN03226 serine hydroxymethylt 97.5 0.0035 7.7E-08 50.1 12.6 97 55-158 313-419 (475)
227 TIGR01365 serC_2 phosphoserine 97.5 0.012 2.6E-07 45.6 15.0 99 54-155 261-370 (374)
228 COG4992 ArgD Ornithine/acetylo 97.5 0.0061 1.3E-07 47.2 13.0 137 5-161 257-401 (404)
229 TIGR03235 DNA_S_dndA cysteine 97.5 0.00023 5.1E-09 54.3 5.1 103 32-147 240-347 (353)
230 KOG1357 Serine palmitoyltransf 97.5 0.0011 2.3E-08 51.7 8.5 133 10-156 354-500 (519)
231 PRK06917 hypothetical protein; 97.4 0.014 3E-07 46.4 14.5 145 8-159 277-438 (447)
232 COG0160 GabT 4-aminobutyrate a 97.4 0.013 2.9E-07 46.2 14.1 145 6-159 296-446 (447)
233 TIGR02006 IscS cysteine desulf 97.4 0.0037 8E-08 48.7 11.2 116 31-161 241-380 (402)
234 PRK07046 aminotransferase; Val 97.4 0.012 2.5E-07 46.9 13.8 139 6-159 290-451 (453)
235 PRK06234 methionine gamma-lyas 97.4 0.02 4.4E-07 44.7 15.0 139 2-158 214-397 (400)
236 TIGR03372 putres_am_tran putre 97.3 0.012 2.6E-07 46.6 13.3 132 7-155 300-441 (442)
237 PF00464 SHMT: Serine hydroxym 97.3 0.012 2.7E-07 45.8 13.0 123 4-139 234-381 (399)
238 PLN02760 4-aminobutyrate:pyruv 97.3 0.015 3.2E-07 46.9 13.7 138 7-159 336-492 (504)
239 cd00616 AHBA_syn 3-amino-5-hyd 97.3 0.011 2.4E-07 44.9 12.6 137 4-152 170-351 (352)
240 COG0520 csdA Selenocysteine ly 97.3 0.0084 1.8E-07 47.0 11.9 96 54-157 298-404 (405)
241 PRK06105 aminotransferase; Pro 97.3 0.015 3.3E-07 46.3 13.6 140 7-161 294-452 (460)
242 PRK08297 L-lysine aminotransfe 97.3 0.0083 1.8E-07 47.6 11.9 111 30-159 325-442 (443)
243 PRK07481 hypothetical protein; 97.3 0.027 5.8E-07 44.8 14.8 141 7-160 289-447 (449)
244 COG0112 GlyA Glycine/serine hy 97.2 0.024 5.2E-07 43.7 13.5 143 4-158 231-390 (413)
245 cd00611 PSAT_like Phosphoserin 97.2 0.024 5.1E-07 43.6 13.7 133 8-155 199-353 (355)
246 PRK07483 hypothetical protein; 97.2 0.031 6.8E-07 44.3 14.5 148 6-160 274-439 (443)
247 PRK00615 glutamate-1-semialdeh 97.2 0.013 2.9E-07 46.3 12.3 141 6-159 274-429 (433)
248 KOG1368 Threonine aldolase [Am 97.2 0.025 5.3E-07 42.3 12.7 127 7-154 229-364 (384)
249 COG2008 GLY1 Threonine aldolas 97.2 0.031 6.7E-07 42.5 13.5 133 6-156 203-341 (342)
250 PRK06148 hypothetical protein; 97.2 0.03 6.5E-07 48.9 15.2 145 5-159 858-1011(1013)
251 PRK07504 O-succinylhomoserine 97.2 0.015 3.3E-07 45.4 12.2 68 2-77 213-285 (398)
252 KOG1411 Aspartate aminotransfe 97.1 0.0045 9.7E-08 46.9 8.5 133 2-155 275-422 (427)
253 TIGR00508 bioA adenosylmethion 97.1 0.016 3.6E-07 45.7 12.3 130 8-158 285-426 (427)
254 PRK08045 cystathionine gamma-s 97.1 0.063 1.4E-06 41.8 15.3 66 3-75 202-269 (386)
255 PRK07269 cystathionine gamma-s 97.1 0.0059 1.3E-07 47.1 9.5 131 9-156 207-362 (364)
256 PRK08133 O-succinylhomoserine 97.1 0.04 8.8E-07 42.9 14.2 66 2-75 209-277 (390)
257 PRK12389 glutamate-1-semialdeh 97.1 0.021 4.6E-07 45.0 12.2 138 6-158 273-427 (428)
258 PRK04366 glycine dehydrogenase 97.1 0.045 9.8E-07 43.9 14.2 103 54-161 347-451 (481)
259 PRK06149 hypothetical protein; 97.0 0.037 8.1E-07 48.1 14.3 142 6-158 819-970 (972)
260 PRK06938 diaminobutyrate--2-ox 97.0 0.046 1E-06 43.6 13.9 144 5-159 304-461 (464)
261 PRK07810 O-succinylhomoserine 97.0 0.052 1.1E-06 42.6 14.0 66 2-75 218-287 (403)
262 PRK03715 argD acetylornithine 97.0 0.035 7.6E-07 43.4 12.8 133 6-159 253-394 (395)
263 PRK07482 hypothetical protein; 97.0 0.061 1.3E-06 42.9 14.0 141 8-159 297-455 (461)
264 PRK06062 hypothetical protein; 96.9 0.047 1E-06 43.4 13.3 140 7-160 290-447 (451)
265 PRK13360 omega amino acid--pyr 96.9 0.099 2.1E-06 41.5 14.8 137 7-159 291-441 (442)
266 TIGR02080 O_succ_thio_ly O-suc 96.9 0.11 2.4E-06 40.4 14.7 66 3-75 201-268 (382)
267 PRK07480 putative aminotransfe 96.9 0.046 1E-06 43.6 12.8 140 7-161 295-451 (456)
268 PRK05630 adenosylmethionine--8 96.9 0.048 1E-06 43.0 12.8 129 7-159 277-421 (422)
269 PRK09221 beta alanine--pyruvat 96.8 0.11 2.3E-06 41.4 14.5 137 7-159 294-444 (445)
270 TIGR01325 O_suc_HS_sulf O-succ 96.8 0.14 3E-06 39.8 15.0 66 2-75 202-270 (380)
271 PRK06931 diaminobutyrate--2-ox 96.8 0.066 1.4E-06 42.7 13.3 144 6-160 299-456 (459)
272 PRK08249 cystathionine gamma-s 96.8 0.14 3.1E-06 40.0 14.6 66 2-75 212-280 (398)
273 TIGR01814 kynureninase kynuren 96.8 0.033 7.2E-07 43.5 11.2 87 54-156 307-405 (406)
274 PRK06173 adenosylmethionine--8 96.8 0.084 1.8E-06 41.8 13.3 131 8-159 284-426 (429)
275 PRK06943 adenosylmethionine--8 96.7 0.11 2.4E-06 41.4 13.8 138 6-159 296-447 (453)
276 PRK06082 4-aminobutyrate amino 96.7 0.14 3.1E-06 40.9 14.2 141 7-160 304-453 (459)
277 PLN02271 serine hydroxymethylt 96.7 0.078 1.7E-06 43.2 12.5 97 55-157 434-539 (586)
278 PRK08776 cystathionine gamma-s 96.6 0.23 5.1E-06 39.0 15.4 64 5-75 212-277 (405)
279 TIGR01328 met_gam_lyase methio 96.6 0.22 4.7E-06 38.9 14.6 66 2-75 207-277 (391)
280 TIGR03251 LAT_fam L-lysine 6-t 96.6 0.049 1.1E-06 43.1 11.1 57 85-154 373-430 (431)
281 PRK07986 adenosylmethionine--8 96.6 0.073 1.6E-06 42.1 12.1 130 8-158 282-423 (428)
282 PRK05965 hypothetical protein; 96.6 0.23 4.9E-06 39.7 14.8 141 6-160 289-449 (459)
283 PLN02482 glutamate-1-semialdeh 96.6 0.1 2.3E-06 41.8 12.9 141 5-159 318-474 (474)
284 PRK07036 hypothetical protein; 96.6 0.19 4E-06 40.3 14.2 139 7-159 297-453 (466)
285 PRK08064 cystathionine beta-ly 96.6 0.22 4.8E-06 38.8 14.3 66 5-75 205-270 (390)
286 PRK12403 putative aminotransfe 96.5 0.24 5.2E-06 39.6 14.6 143 8-160 299-454 (460)
287 COG0001 HemL Glutamate-1-semia 96.5 0.11 2.3E-06 40.9 11.9 147 5-161 272-431 (432)
288 PRK06209 glutamate-1-semialdeh 96.5 0.11 2.5E-06 41.0 12.5 41 106-159 366-406 (431)
289 COG1932 SerC Phosphoserine ami 96.5 0.21 4.5E-06 38.3 12.9 139 2-159 202-364 (365)
290 KOG2862 Alanine-glyoxylate ami 96.3 0.17 3.6E-06 38.2 11.4 101 52-160 278-384 (385)
291 PRK07030 adenosylmethionine--8 96.3 0.29 6.3E-06 39.2 13.6 139 6-159 289-447 (466)
292 PRK07503 methionine gamma-lyas 96.1 0.48 1E-05 37.2 15.2 66 2-75 213-283 (403)
293 TIGR02379 ECA_wecE TDP-4-keto- 96.1 0.35 7.7E-06 37.5 12.9 25 4-28 184-208 (376)
294 PRK08742 adenosylmethionine--8 96.0 0.56 1.2E-05 37.7 13.9 137 8-159 314-468 (472)
295 PLN02724 Molybdenum cofactor s 95.9 0.064 1.4E-06 45.8 8.9 99 54-156 338-486 (805)
296 PRK11706 TDP-4-oxo-6-deoxy-D-g 95.8 0.1 2.2E-06 40.4 9.1 106 5-121 185-318 (375)
297 PRK07811 cystathionine gamma-s 95.8 0.68 1.5E-05 36.1 14.7 67 2-75 209-278 (388)
298 PRK06916 adenosylmethionine--8 95.8 0.57 1.2E-05 37.5 13.2 137 7-161 300-458 (460)
299 PLN02880 tyrosine decarboxylas 95.7 0.27 6E-06 39.6 11.2 104 55-162 379-488 (490)
300 TIGR02618 tyr_phenol_ly tyrosi 95.6 0.93 2E-05 36.1 13.8 144 9-158 260-426 (450)
301 PLN02414 glycine dehydrogenase 95.5 0.66 1.4E-05 40.6 13.3 106 51-161 801-910 (993)
302 TIGR00699 GABAtrns_euk 4-amino 95.5 0.49 1.1E-05 37.9 11.7 61 83-156 403-464 (464)
303 PRK13237 tyrosine phenol-lyase 95.5 1 2.3E-05 36.0 14.1 144 9-158 267-433 (460)
304 PRK12566 glycine dehydrogenase 95.3 0.96 2.1E-05 39.3 13.4 102 54-160 773-878 (954)
305 TIGR01329 cysta_beta_ly_E cyst 95.1 1.2 2.6E-05 34.6 14.7 137 5-158 198-375 (378)
306 PRK07050 cystathionine beta-ly 95.0 1.3 2.9E-05 34.6 14.5 140 4-158 216-391 (394)
307 PRK08861 cystathionine gamma-s 95.0 1.4 3E-05 34.5 15.2 64 5-75 205-270 (388)
308 PLN02651 cysteine desulfurase 94.8 0.29 6.2E-06 37.6 8.6 124 7-144 205-362 (364)
309 PLN02590 probable tyrosine dec 94.2 1.2 2.6E-05 36.5 11.1 107 53-162 425-536 (539)
310 TIGR01326 OAH_OAS_sulfhy OAH/O 94.0 0.025 5.5E-07 44.5 1.3 107 2-123 205-316 (418)
311 PRK12462 phosphoserine aminotr 93.9 2.4 5.1E-05 33.0 12.2 140 2-157 200-361 (364)
312 TIGR00461 gcvP glycine dehydro 93.8 0.82 1.8E-05 39.8 9.8 86 52-153 338-426 (939)
313 PRK04013 argD acetylornithine/ 93.8 0.93 2E-05 35.1 9.4 126 6-159 235-361 (364)
314 PRK08574 cystathionine gamma-s 93.8 2.6 5.7E-05 32.9 14.6 66 3-75 201-269 (385)
315 TIGR01788 Glu-decarb-GAD gluta 93.7 2.4 5.2E-05 33.7 11.7 102 54-159 324-430 (431)
316 KOG1401 Acetylornithine aminot 93.3 3.1 6.8E-05 32.7 11.3 140 5-160 279-432 (433)
317 COG0161 BioA Adenosylmethionin 92.7 4.2 9.2E-05 32.5 11.5 135 9-160 293-445 (449)
318 KOG1358 Serine palmitoyltransf 92.4 1 2.2E-05 35.1 7.6 103 55-158 355-465 (467)
319 KOG1404 Alanine-glyoxylate ami 92.1 4.8 0.0001 31.6 14.8 138 5-152 285-432 (442)
320 PRK11658 UDP-4-amino-4-deoxy-L 92.1 4.7 0.0001 31.3 12.6 25 3-27 183-207 (379)
321 PRK05367 glycine dehydrogenase 91.8 3.1 6.8E-05 36.5 10.6 83 54-153 352-437 (954)
322 TIGR00461 gcvP glycine dehydro 91.4 8.2 0.00018 33.9 12.6 103 54-161 764-870 (939)
323 PRK05367 glycine dehydrogenase 91.4 6.1 0.00013 34.8 12.0 103 54-161 772-878 (954)
324 PLN02414 glycine dehydrogenase 91.3 3.4 7.4E-05 36.4 10.4 83 54-153 380-464 (993)
325 PLN02974 adenosylmethionine-8- 90.5 11 0.00024 32.7 14.8 139 5-156 658-816 (817)
326 PRK09028 cystathionine beta-ly 90.1 7.9 0.00017 30.4 15.0 65 3-75 211-277 (394)
327 COG3033 TnaA Tryptophanase [Am 89.8 8.1 0.00018 30.2 11.9 122 31-158 307-444 (471)
328 KOG2467 Glycine/serine hydroxy 89.6 7.9 0.00017 30.3 9.9 92 58-155 323-423 (477)
329 TIGR01324 cysta_beta_ly_B cyst 89.5 8.5 0.00018 30.0 13.4 64 4-75 201-266 (377)
330 COG3844 Kynureninase [Amino ac 88.7 9.4 0.0002 29.4 10.4 92 54-161 304-405 (407)
331 PF01053 Cys_Met_Meta_PP: Cys/ 88.4 11 0.00023 29.7 14.5 133 6-157 209-386 (386)
332 KOG1402 Ornithine aminotransfe 88.3 10 0.00022 29.3 11.4 135 7-157 283-426 (427)
333 PRK06702 O-acetylhomoserine am 88.1 12 0.00026 29.9 12.6 42 30-78 272-314 (432)
334 TIGR03588 PseC UDP-4-keto-6-de 86.3 14 0.00029 28.7 13.3 97 54-155 257-379 (380)
335 PF05889 SLA_LP_auto_ag: Solub 83.6 20 0.00043 28.2 14.3 144 11-157 233-389 (389)
336 PRK02308 uvsE putative UV dama 83.2 18 0.00039 27.4 9.5 97 53-157 35-137 (303)
337 PRK05967 cystathionine beta-ly 82.5 22 0.00048 28.0 15.3 64 4-75 215-280 (395)
338 PF01041 DegT_DnrJ_EryC1: DegT 81.5 20 0.00044 27.6 9.0 107 5-123 178-310 (363)
339 PRK08248 O-acetylhomoserine am 81.5 25 0.00055 28.0 14.3 28 130-160 402-429 (431)
340 KOG1403 Predicted alanine-glyo 81.2 22 0.00048 27.2 14.4 140 6-157 284-436 (452)
341 KOG1549 Cysteine desulfurase N 80.4 28 0.0006 27.8 9.6 32 130-161 389-421 (428)
342 PF05687 DUF822: Plant protein 76.7 20 0.00043 24.0 6.6 24 103-126 46-70 (150)
343 PRK04311 selenocysteine syntha 75.2 42 0.00092 27.1 11.8 141 5-157 296-463 (464)
344 PF06153 DUF970: Protein of un 74.6 7.7 0.00017 24.7 4.0 54 102-159 11-67 (109)
345 TIGR02617 tnaA_trp_ase tryptop 74.0 46 0.00099 26.9 12.9 121 31-158 305-441 (467)
346 PRK06434 cystathionine gamma-l 73.9 41 0.0009 26.4 13.9 62 7-75 215-278 (384)
347 PLN02509 cystathionine beta-ly 72.9 49 0.0011 26.8 14.7 64 7-77 286-352 (464)
348 PRK05939 hypothetical protein; 72.3 46 0.00099 26.2 12.9 25 130-157 371-395 (397)
349 COG1103 Archaea-specific pyrid 69.8 46 0.00099 25.2 10.3 143 7-159 224-381 (382)
350 PRK07812 O-acetylhomoserine am 68.3 18 0.00038 29.0 5.7 29 130-161 406-434 (436)
351 PRK15407 lipopolysaccharide bi 66.6 65 0.0014 25.7 12.4 18 140-157 418-435 (438)
352 PRK07671 cystathionine beta-ly 64.4 66 0.0014 25.1 14.5 62 7-75 203-266 (377)
353 PRK06084 O-acetylhomoserine am 60.7 31 0.00067 27.4 5.8 27 130-159 397-423 (425)
354 PRK08134 O-acetylhomoserine am 59.9 29 0.00064 27.7 5.6 28 130-160 402-429 (433)
355 KOG1405 4-aminobutyrate aminot 58.4 90 0.002 24.6 11.1 68 77-158 415-483 (484)
356 PF03295 Pox_TAA1: Poxvirus tr 57.6 20 0.00043 20.1 3.0 34 103-139 28-61 (63)
357 PRK06176 cystathionine gamma-s 57.5 90 0.002 24.4 14.1 26 130-158 353-378 (380)
358 TIGR00629 uvde UV damage endon 57.4 85 0.0019 24.0 10.3 96 54-157 40-140 (312)
359 PRK02769 histidine decarboxyla 57.1 93 0.002 24.4 12.5 82 54-158 290-372 (380)
360 PRK08114 cystathionine beta-ly 56.1 1E+02 0.0022 24.4 14.7 63 5-75 216-280 (395)
361 PF00224 PK: Pyruvate kinase, 53.8 50 0.0011 25.6 5.8 44 104-161 16-59 (348)
362 COG4050 Uncharacterized protei 53.6 50 0.0011 21.4 4.7 30 132-162 121-150 (152)
363 PF05932 CesT: Tir chaperone p 49.4 38 0.00083 20.9 3.9 53 107-160 60-119 (119)
364 PF04481 DUF561: Protein of un 47.6 36 0.00078 24.7 3.8 97 12-121 46-150 (242)
365 PF09885 DUF2112: Uncharacteri 47.4 75 0.0016 21.1 4.9 27 132-159 117-143 (143)
366 PF01930 Cas_Cas4: Domain of u 47.2 24 0.00052 23.7 2.9 52 106-157 87-138 (162)
367 PRK05994 O-acetylhomoserine am 46.9 54 0.0012 26.1 5.2 25 130-157 401-425 (427)
368 TIGR03799 NOD_PanD_pyr putativ 45.8 1.7E+02 0.0037 24.1 9.4 95 54-148 398-515 (522)
369 COG1003 GcvP Glycine cleavage 45.4 1.7E+02 0.0036 23.8 11.5 127 29-161 321-450 (496)
370 COG5561 Predicted metal-bindin 42.1 62 0.0014 19.8 3.7 44 76-126 56-100 (101)
371 PF04237 YjbR: YjbR; InterPro 41.1 65 0.0014 19.3 3.9 43 105-150 43-86 (92)
372 cd04751 Commd3 COMM_Domain con 40.7 73 0.0016 19.5 4.1 27 134-161 66-92 (95)
373 PRK08187 pyruvate kinase; Vali 40.7 1.1E+02 0.0023 25.1 6.0 31 130-160 160-190 (493)
374 TIGR03271 methan_mark_5 putati 40.0 1.1E+02 0.0023 20.3 4.8 27 132-159 116-142 (142)
375 cd08818 CARD_MDA5_1 Caspase ac 39.6 78 0.0017 19.3 3.9 30 16-45 32-61 (88)
376 PF02347 GDC-P: Glycine cleava 39.2 1.7E+02 0.0037 23.6 6.7 86 51-151 340-428 (429)
377 cd04908 ACT_Bt0572_1 N-termina 39.0 70 0.0015 17.7 3.8 34 103-137 14-47 (66)
378 PF13113 DUF3970: Protein of u 38.7 49 0.0011 18.5 2.6 20 134-154 3-22 (60)
379 PRK05613 O-acetylhomoserine am 38.7 55 0.0012 26.2 4.1 26 130-158 411-436 (437)
380 COG1560 HtrB Lauroyl/myristoyl 37.9 1.8E+02 0.004 22.2 7.8 107 48-160 159-282 (308)
381 PF09840 DUF2067: Uncharacteri 37.6 1.4E+02 0.003 21.1 5.5 54 103-161 10-63 (190)
382 TIGR03516 ppisom_GldI peptidyl 37.6 1.4E+02 0.003 20.7 5.7 45 47-91 31-76 (177)
383 PF04298 Zn_peptidase_2: Putat 36.7 58 0.0013 23.6 3.5 37 103-139 38-81 (222)
384 PRK14725 pyruvate kinase; Prov 36.3 1.2E+02 0.0027 25.5 5.7 31 130-160 166-196 (608)
385 TIGR01326 OAH_OAS_sulfhy OAH/O 35.8 80 0.0017 25.0 4.6 24 130-156 394-417 (418)
386 KOG1122 tRNA and rRNA cytosine 35.1 2.4E+02 0.0053 22.8 7.4 62 55-127 341-404 (460)
387 PRK09371 gas vesicle synthesis 34.8 60 0.0013 18.6 2.7 17 103-120 8-24 (68)
388 cd00288 Pyruvate_Kinase Pyruva 33.9 1.6E+02 0.0036 24.0 6.0 44 103-160 15-58 (480)
389 TIGR01064 pyruv_kin pyruvate k 32.2 1.8E+02 0.0038 23.7 6.0 30 131-160 28-57 (473)
390 PRK06247 pyruvate kinase; Prov 32.1 1.7E+02 0.0038 23.9 5.8 30 131-160 32-61 (476)
391 PF15219 TEX12: Testis-express 31.9 1.1E+02 0.0023 18.9 3.5 23 50-72 76-98 (100)
392 KOG0628 Aromatic-L-amino-acid/ 31.4 2.9E+02 0.0064 22.6 11.3 54 103-159 417-472 (511)
393 COG0626 MetC Cystathionine bet 31.0 2.7E+02 0.0059 22.1 13.2 60 9-75 220-282 (396)
394 PF07071 DUF1341: Protein of u 30.3 90 0.0019 22.4 3.5 41 63-118 164-204 (218)
395 PF08756 YfkB: YfkB-like domai 30.1 1.7E+02 0.0038 19.6 5.1 31 102-138 49-79 (153)
396 PF07687 M20_dimer: Peptidase 29.9 1.3E+02 0.0029 18.1 4.4 32 130-161 78-109 (111)
397 COG2061 ACT-domain-containing 29.7 1.6E+02 0.0034 20.2 4.4 30 129-158 128-157 (170)
398 PF11363 DUF3164: Protein of u 29.6 2.1E+02 0.0045 20.3 6.6 58 103-161 50-114 (195)
399 KOG1383 Glutamate decarboxylas 29.4 3.2E+02 0.0069 22.4 12.3 93 57-163 355-451 (491)
400 PF09158 MotCF: Bacteriophage 29.2 1.2E+02 0.0027 19.0 3.6 29 66-94 63-91 (103)
401 TIGR03006 pepcterm_polyde poly 28.4 2.5E+02 0.0054 20.9 5.8 48 59-120 24-71 (265)
402 PRK15400 lysine decarboxylase 28.1 4E+02 0.0087 23.2 11.9 46 103-155 510-556 (714)
403 PF00741 Gas_vesicle: Gas vesi 27.8 95 0.0021 15.8 2.5 24 105-139 3-26 (39)
404 PF14085 DUF4265: Domain of un 27.3 1.7E+02 0.0037 18.6 4.7 32 63-95 65-96 (117)
405 KOG2278 RNA:NAD 2'-phosphotran 27.3 66 0.0014 22.4 2.4 38 77-122 146-183 (207)
406 PRK06946 lipid A biosynthesis 27.2 2.7E+02 0.0058 20.8 9.0 58 103-160 207-268 (293)
407 PRK06739 pyruvate kinase; Vali 26.7 2.3E+02 0.005 22.2 5.5 40 103-156 14-53 (352)
408 PF05596 Taeniidae_ag: Taeniid 26.7 1.3E+02 0.0029 17.1 4.9 26 18-43 11-36 (64)
409 PF11629 Mst1_SARAH: C termina 26.3 1.2E+02 0.0025 16.3 3.9 23 51-73 25-47 (49)
410 PLN02461 Probable pyruvate kin 26.1 2.5E+02 0.0054 23.3 5.8 44 103-160 34-77 (511)
411 KOG4175 Tryptophan synthase al 26.1 2.6E+02 0.0056 20.2 6.1 32 87-126 127-158 (268)
412 PF09969 DUF2203: Uncharacteri 26.0 1.9E+02 0.0041 18.7 4.6 40 54-96 48-87 (120)
413 PRK06354 pyruvate kinase; Prov 25.7 2.6E+02 0.0055 23.7 5.9 44 103-160 21-64 (590)
414 cd04893 ACT_GcvR_1 ACT domains 25.5 1.4E+02 0.0031 17.1 4.7 35 104-139 15-49 (77)
415 PF01842 ACT: ACT domain; Int 25.1 1.2E+02 0.0026 16.1 3.7 50 104-155 14-64 (66)
416 smart00340 HALZ homeobox assoc 25.1 1.1E+02 0.0025 15.8 3.5 31 52-82 8-39 (44)
417 TIGR03581 EF_0839 conserved hy 25.0 1.6E+02 0.0035 21.4 4.1 43 61-118 162-204 (236)
418 KOG2470 Similar to IMP-GMP spe 24.6 1.2E+02 0.0026 23.8 3.6 68 5-75 367-440 (510)
419 PF00202 Aminotran_3: Aminotra 24.4 1.2E+02 0.0027 23.1 3.8 39 6-45 251-291 (339)
420 PF05036 SPOR: Sporulation rel 24.4 1.3E+02 0.0028 16.7 3.1 49 102-153 16-65 (76)
421 PF14527 LAGLIDADG_WhiA: WhiA 24.3 1E+02 0.0023 18.8 2.8 63 78-154 14-76 (93)
422 PRK13281 succinylarginine dihy 23.9 3.7E+02 0.0081 21.5 6.1 33 128-161 362-404 (442)
423 PF02590 SPOUT_MTase: Predicte 23.9 2.2E+02 0.0047 19.3 4.5 54 82-140 65-127 (155)
424 TIGR00474 selA seryl-tRNA(sec) 23.3 4.1E+02 0.0088 21.5 10.5 134 5-152 291-453 (454)
425 PLN02913 dihydrofolate synthet 23.2 3.2E+02 0.0069 22.5 6.0 56 101-159 86-147 (510)
426 PF03484 B5: tRNA synthetase B 23.1 1.6E+02 0.0034 16.7 3.7 50 64-116 20-69 (70)
427 COG0399 WecE Predicted pyridox 23.0 3.8E+02 0.0083 21.2 13.2 21 8-28 190-210 (374)
428 PTZ00372 endonuclease 4-like p 23.0 4E+02 0.0087 21.4 6.5 69 84-158 156-226 (413)
429 COG0076 GadB Glutamate decarbo 22.9 4.2E+02 0.0091 21.5 10.2 88 2-94 277-381 (460)
430 PF01995 DUF128: Domain of unk 22.7 1.6E+02 0.0034 21.6 3.8 29 130-158 23-51 (236)
431 KOG3671 Actin regulatory prote 22.6 4.2E+02 0.0091 22.0 6.3 39 117-157 100-140 (569)
432 PF10229 DUF2246: Uncharacteri 22.4 2.7E+02 0.0058 21.0 5.0 84 5-89 125-217 (278)
433 KOG1957 DNA topoisomerase III 22.3 65 0.0014 26.1 1.9 54 86-153 108-161 (555)
434 PRK00083 frr ribosome recyclin 22.2 2.9E+02 0.0062 19.4 7.5 49 105-159 76-124 (185)
435 PF05952 ComX: Bacillus compet 22.2 28 0.00061 19.3 -0.1 36 11-47 8-44 (57)
436 COG3340 PepE Peptidase E [Amin 22.2 1.8E+02 0.0038 21.1 3.8 47 65-126 51-97 (224)
437 KOG2040 Glycine dehydrogenase 22.0 5.4E+02 0.012 22.5 8.3 112 38-159 804-919 (1001)
438 cd00446 GrpE GrpE is the adeni 22.0 1.6E+02 0.0035 19.2 3.5 32 54-85 61-92 (137)
439 PRK13578 ornithine decarboxyla 22.0 5.4E+02 0.012 22.5 11.9 48 104-157 517-564 (720)
440 PHA03073 late transcription fa 21.8 1.3E+02 0.0028 20.1 2.9 34 103-139 115-148 (150)
441 PRK09790 hypothetical protein; 21.8 75 0.0016 18.4 1.6 12 3-14 20-31 (91)
442 PF08848 DUF1818: Domain of un 21.3 59 0.0013 21.0 1.2 7 5-11 5-11 (117)
443 cd00219 ToxGAP GTPase-activati 21.2 38 0.00083 21.8 0.3 56 103-160 59-114 (120)
444 PF03401 TctC: Tripartite tric 21.1 1.9E+02 0.0041 21.4 4.1 14 16-29 215-228 (274)
445 COG0285 FolC Folylpolyglutamat 20.3 4.7E+02 0.01 21.1 8.0 57 102-158 56-113 (427)
No 1
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=99.97 E-value=8.8e-30 Score=198.65 Aligned_cols=163 Identities=48% Similarity=0.960 Sum_probs=142.9
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
|||+||+|+||++++++++++.+.....+..+|++.|.+++.+|+++++++++++..++.++++++.+.+.|++.|+.+.
T Consensus 280 ~fg~~GlRvG~ivs~n~~l~~~~~~~~~~~~~s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~gi~~~ 359 (447)
T PLN02607 280 DLGLPGFRVGTIYSYNDKVVTTARRMSSFTLVSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRAGIECL 359 (447)
T ss_pred cCCCCcceEEEEEEcCHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 68999999999999778888888877666678999999999999999887899999999999999999999999999999
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHhh
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~ 160 (163)
+|+||+|+|++++..........+.++++.+++++||.|.||+.|+...++|+||+|+..+++.+++++++|.+++++.+
T Consensus 360 ~~~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~fa~~~~~~l~~gl~Ri~~~l~~~~ 439 (447)
T PLN02607 360 KGNAGLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHCSEPGWFRVCFANMSEDTLEVALKRIHRFMDRRK 439 (447)
T ss_pred cCCeeEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999986543222234568888888878999999999987678999999997688999999999999998877
Q ss_pred hcC
Q 042816 161 SHS 163 (163)
Q Consensus 161 ~~~ 163 (163)
+.|
T Consensus 440 ~~~ 442 (447)
T PLN02607 440 TAS 442 (447)
T ss_pred hhh
Confidence 653
No 2
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=99.97 E-value=2.3e-29 Score=193.28 Aligned_cols=151 Identities=25% Similarity=0.424 Sum_probs=136.1
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CC
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GI 77 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 77 (163)
+|+|+|||+||++++++++++.+.+.+.. ++++.+.|.++..+|+.++. +.+.+.+++.|++|++.+.+.|++. |+
T Consensus 237 ~~~mtGwRvG~~v~~~~~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~-~~~~~~~~~~~~~rrd~l~~~l~~~~g~ 315 (393)
T COG0436 237 TYGMTGWRIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQS-DEVVEEMREEYRERRDLLVEALNEIGGL 315 (393)
T ss_pred cccccccceeEeecChHHHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccc-hHHHHHHHHHHHHHHHHHHHHHHhcCCe
Confidence 58999999999999338999999877774 68999999999999998743 4678899999999999999999999 69
Q ss_pred cccc-CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-CCceEEEEEecCChhHHHHHHHHHHHH
Q 042816 78 ECAK-SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI-EPGWFSFSFTLLTEKDIHVVMERIRRI 155 (163)
Q Consensus 78 ~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-~~~~iRi~~~~~~~~~l~~~~~~l~~~ 155 (163)
++.. |+|+||+|++++... ++.+|+.+|++++||.|.||+.|+.. +++++|+|++. +.+.+++++++|.++
T Consensus 316 ~~~~~p~Ga~Y~~~~i~~~~------d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~~-~~~~l~~a~~rl~~~ 388 (393)
T COG0436 316 SVVKPPEGAFYLFPKIPELL------DSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLAT-SEETLEEALRRLARF 388 (393)
T ss_pred eeccCCCeeEEEEeecCCCC------CHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEec-CHHHHHHHHHHHHHH
Confidence 9988 899999999999753 89999999999999999999999985 78999999998 779999999999999
Q ss_pred HHHh
Q 042816 156 SQTC 159 (163)
Q Consensus 156 ~~~~ 159 (163)
+..+
T Consensus 389 ~~~~ 392 (393)
T COG0436 389 LAEY 392 (393)
T ss_pred HHhc
Confidence 8765
No 3
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=99.97 E-value=1.5e-28 Score=193.81 Aligned_cols=160 Identities=39% Similarity=0.784 Sum_probs=138.8
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
+||+||+|+||++++++.+++.+.....+..+|++.|.+++.+|++++++++++++.++.|+++++.+.+.|++.|+++.
T Consensus 280 ~~glpGlRvG~li~~~~~l~~~~~~~~~~~~vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~gi~~~ 359 (496)
T PLN02376 280 DMGLPGFRVGIVYSFNDSVVSCARKMSSFGLVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKADIACL 359 (496)
T ss_pred cCCCCcceEEEEEECCHHHHHHHHHHhhcCCCCHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccc
Confidence 68999999999999667777777666666678999999999999999887899999999999999999999999999999
Q ss_pred cCCceeEEEeecCCcccC-CChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHh
Q 042816 81 KSNGGFYCWADMSGLISS-YSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~ 159 (163)
+|+||+|+|++++..... ....++.++++.|+++.||.|.||+.|+...++|+|||++..+.+++++++++|.+++.+.
T Consensus 360 ~~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa~~~~~~l~~al~rl~~~l~~~ 439 (496)
T PLN02376 360 TSNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFANMDDDTLHVALGRIQDFVSKN 439 (496)
T ss_pred CCCceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccCCCCCCEEEEEeeCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999865422 2223457899999987899999999998666899999999668899999999999998765
Q ss_pred h
Q 042816 160 K 160 (163)
Q Consensus 160 ~ 160 (163)
+
T Consensus 440 ~ 440 (496)
T PLN02376 440 K 440 (496)
T ss_pred h
Confidence 4
No 4
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=99.96 E-value=5.4e-28 Score=189.74 Aligned_cols=160 Identities=43% Similarity=0.866 Sum_probs=136.4
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
+||+||+|+||++++++.+++.+.+...+.++|.+.|.+++.+|+++.+.+.+++++++.|+++++.+.+.|+++|+.+.
T Consensus 273 ~~~l~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~gi~~~ 352 (468)
T PLN02450 273 DLGLPGFRVGAIYSNDEMVVSAATKMSSFGLVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAAGIKCL 352 (468)
T ss_pred cCCCCCccEEEEEECCHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 58999999999999546677777776555668999999999999998775568999999999999999999999999999
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHhh
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~ 160 (163)
+|+||||+|+++++.+......+..++++.|++++||.|.||+.|+...++|+||+++.++++++++++++|.+++.+..
T Consensus 353 ~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~f~~~~~~~l~~~l~ri~~~l~~~~ 432 (468)
T PLN02450 353 KSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFANMSEETLDLAMKRLKSFVESDS 432 (468)
T ss_pred CCCceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHhcc
Confidence 99999999999986543222334567888888878999999999987668999999996588999999999999887644
No 5
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=99.96 E-value=5.4e-27 Score=174.50 Aligned_cols=160 Identities=45% Similarity=0.891 Sum_probs=150.1
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
|||+||+|+|.+...|++++....+...+..+|+..|..++.+|+|..+.+.+++..+++++.+..++.+.|++.|+.+.
T Consensus 304 D~GlpGfRvGviYS~ne~VvsaA~kmssf~~vSs~tQ~~la~LLSD~~f~~~yl~en~~Rl~~rh~~~~~gLk~lgI~cl 383 (471)
T KOG0256|consen 304 DFGLPGFRVGVIYSNNEDVVSAATKMSSFGLVSSQTQYLLASLLSDEEFTREYLRENNKRLRIRHRYIVEGLKALGIPCL 383 (471)
T ss_pred ccCCCceEEEEEEecChHHHHHHHHHhhccCCcHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCcee
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHhh
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~ 160 (163)
+.++|+|+|+|+...+...+++.+.++++.++.+-++.+.||+.|.+..+||+|++|+...++.++-+++||..++....
T Consensus 384 ~s~AGlF~wvDlr~lL~s~tfe~El~Lw~~i~~~vklnlSpG~s~~C~EpGWFRvcFAn~~~~t~~~am~Ri~~~~~~~~ 463 (471)
T KOG0256|consen 384 KSNAGLFCWVDLRKLLTSLTFEGELELWERILDNVKLNLSPGSSCHCHEPGWFRVCFANMSEETLEVAMRRLKQFLDSQV 463 (471)
T ss_pred ecCCeeEEEEEhHHhcCcCChHHHHHHHHHHHHhhccccCCCCcceecCCCeEEEEeccCCHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999888888888899999999866999999999999889999999999777777779999999887543
No 6
>PLN00175 aminotransferase family protein; Provisional
Probab=99.95 E-value=2.5e-26 Score=178.00 Aligned_cols=147 Identities=16% Similarity=0.262 Sum_probs=129.3
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+|++||+|+||+++ |+++++.+.+... .+++|.+.|.++..+|+++ +.++++.++.|+++++++.+.|+++|++
T Consensus 260 ~~~~~G~RiG~~v~-~~~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 335 (413)
T PLN00175 260 TFSLTGWKIGWAIA-PPHLTWGVRQAHSFLTFATATPMQWAAVAALRAP---ESYYEELKRDYSAKKDILVEGLKEVGFK 335 (413)
T ss_pred hccCcchheeeeEe-CHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 47899999999999 9999999988876 3689999999999999886 6789999999999999999999999999
Q ss_pred cccCCceeEEEeecCC-cccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC---CCCceEEEEEecCChhHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSG-LISSYSEKGELELWDKLLNVAKVNVTPGSSCHC---IEPGWFSFSFTLLTEKDIHVVMERIRR 154 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~---~~~~~iRi~~~~~~~~~l~~~~~~l~~ 154 (163)
+.+|+||||+|++++. .. .++.++++.|++++||.+.||+.|+. .+++++||+++. +++++++++++|.+
T Consensus 336 ~~~p~g~~f~~~~~~~~~~-----~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~~-~~e~l~~~~~rL~~ 409 (413)
T PLN00175 336 VYPSSGTYFVMVDHTPFGF-----ENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCK-DEETLRAAVERMKT 409 (413)
T ss_pred ecCCCeeEEEEEeccccCC-----CCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEcC-CHHHHHHHHHHHHH
Confidence 9999999999999853 21 25689999998778999999999963 236799999997 89999999999998
Q ss_pred HHH
Q 042816 155 ISQ 157 (163)
Q Consensus 155 ~~~ 157 (163)
+++
T Consensus 410 ~~~ 412 (413)
T PLN00175 410 KLK 412 (413)
T ss_pred HHh
Confidence 875
No 7
>PRK09148 aminotransferase; Validated
Probab=99.94 E-value=6.4e-26 Score=175.42 Aligned_cols=153 Identities=20% Similarity=0.322 Sum_probs=133.5
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+||+||+|+||+++ |+++++.+.+... .++++.+.|.++..+|+++ ++++++.++.|+++++.+.+.|+++|+.
T Consensus 239 ~~~~pGlR~G~~v~-~~~~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~~---~~~~~~~~~~~~~~r~~l~~~L~~~~~~ 314 (405)
T PRK09148 239 TFSMAGWRMGFAVG-NERLIAALTRVKSYLDYGAFTPIQVAATAALNGP---QDCIAEMRELYKKRRDVLVESFGRAGWD 314 (405)
T ss_pred ccCCcchheeeeeC-CHHHHHHHHHHHHHhccCCChHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 48999999999999 9999999998876 3678899999999999875 6889999999999999999999999988
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
+..|+||+|+|+++|..... .++.++++.+++++||.|.||+.|+..+++|+||+++. +.+++.+++++|.+++.+
T Consensus 315 ~~~p~~g~f~~~~l~~~~~~---~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~~-~~~~l~~al~~l~~~l~~ 390 (405)
T PRK09148 315 IPPPAASMFAWAPIPEAFRH---LGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALVE-NEQRIRQAARNIKRFLSS 390 (405)
T ss_pred cCCCCeeEEEEEECCCccCC---CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHH
Confidence 88899999999999864210 14678998888768999999999975557899999995 899999999999999987
Q ss_pred hhh
Q 042816 159 CKS 161 (163)
Q Consensus 159 ~~~ 161 (163)
+.+
T Consensus 391 ~~~ 393 (405)
T PRK09148 391 ADE 393 (405)
T ss_pred HHH
Confidence 765
No 8
>PRK07682 hypothetical protein; Validated
Probab=99.94 E-value=2.3e-26 Score=176.35 Aligned_cols=149 Identities=21% Similarity=0.365 Sum_probs=131.0
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
.||+||+|+||+++ |+++++.+.+.... ++++.+.|.++..+|+++ +.++++.++.|+++++++.+.|+++|++
T Consensus 227 ~~~~~GlR~G~~~~-~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 302 (378)
T PRK07682 227 GFAMTGWRLGFIAA-PVYFSEAMLKIHQYSMMCAPTMAQFAALEALRAG---NDDVIRMRDSYRKRRNFFVTSFNEIGLT 302 (378)
T ss_pred cccChhhhhhhhhc-CHHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 47899999999999 99999999877653 578899999999999886 4568899999999999999999999999
Q ss_pred cccCCceeEEEeecCC-cccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSG-LISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
+..|+||||+|++++. .+ ++.++++.|++++||.|.||..|+..+++++|||++. +.+++++++++|.++++
T Consensus 303 ~~~p~g~~~~~~~~~~~~~------~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~l~ 375 (378)
T PRK07682 303 CHVPGGAFYAFPSISSTGL------SSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYAT-SLEQLQEAMKRMKRFVE 375 (378)
T ss_pred cCCCCeeEEEEEeccCCCC------CHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeCC-CHHHHHHHHHHHHHHHh
Confidence 9999999999999853 22 6788999888668999999999976557999999998 88999999999999987
Q ss_pred Hhh
Q 042816 158 TCK 160 (163)
Q Consensus 158 ~~~ 160 (163)
+++
T Consensus 376 ~~~ 378 (378)
T PRK07682 376 NKK 378 (378)
T ss_pred hcC
Confidence 653
No 9
>PRK08636 aspartate aminotransferase; Provisional
Probab=99.94 E-value=8.1e-26 Score=174.75 Aligned_cols=152 Identities=21% Similarity=0.350 Sum_probs=131.4
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+||+||+|+||+++ |+++++.+.+.... .+++++.|.++..+++.. ++++++.++.|+++++.+.+.|++.|++
T Consensus 249 ~~~~~GlRiG~iv~-~~~li~~~~~~~~~~~~~~~~~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 324 (403)
T PRK08636 249 SYNMAGWRVGFVVG-NKKLVGALKKIKSWLDYGMFTPIQVAATIALDGD---QSCVEEIRETYRKRRDVLIESFANAGWE 324 (403)
T ss_pred ccCCccceeeeeeC-CHHHHHHHHHHHHHhcccCChHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 47999999999999 99999999888763 578888999888877654 5789999999999999999999998888
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
+..|+||+|+|+++|..+.. .++.++++.+++++||.|.||+.|+..+++++||+++. +.+++++++++|.++++.
T Consensus 325 ~~~p~~g~~~~~~l~~~~~~---~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~~~~rl~~~l~~ 400 (403)
T PRK08636 325 LQKPRASMFVWAKIPEPARH---LGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALIE-NENRIRQAARNIKKFLKE 400 (403)
T ss_pred ccCCCcceEEEEECCCccCC---CCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEecC-CHHHHHHHHHHHHHHHHh
Confidence 88999999999999864310 14688998888778999999999986667899999995 999999999999999987
Q ss_pred hh
Q 042816 159 CK 160 (163)
Q Consensus 159 ~~ 160 (163)
++
T Consensus 401 ~~ 402 (403)
T PRK08636 401 LE 402 (403)
T ss_pred hc
Confidence 54
No 10
>PRK05957 aspartate aminotransferase; Provisional
Probab=99.94 E-value=1.1e-25 Score=173.20 Aligned_cols=149 Identities=19% Similarity=0.290 Sum_probs=129.6
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-C-
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-G- 76 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g- 76 (163)
+||+||+|+||+++ ++++++.+...... .+++.+.|.++..+|+++ ..++++.++.++++++.+.+.|+++ +
T Consensus 234 ~~g~~GlRiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~r~~l~~~L~~~~~~ 309 (389)
T PRK05957 234 AYGFASWRIGYMVI-PIHLLEAIKKIQDTILICPPVVSQYAALGALQVG---KSYCQQHLPEIAQVRQILLKSLGQLQDR 309 (389)
T ss_pred hccCccceeEEEec-CHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 47899999999999 89999999988764 467889999999999886 4567777788999999999999987 6
Q ss_pred CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 77 IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 77 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
+.+.+|+||+|+|++++..+ ++.++++.|++++||.|.||+.|+...++|+|||++..+.+++++++++|.+.+
T Consensus 310 ~~~~~~~gg~~~~~~~~~~~------~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~l~~~~~~l~~~~ 383 (389)
T PRK05957 310 CTLHPANGAFYCFLKVNTDL------NDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGIERLVQGL 383 (389)
T ss_pred ccccCCCeeEEEEEeCCCCC------ChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEecCCHHHHHHHHHHHHHHH
Confidence 47888999999999998654 788999999876899999999997655679999998768899999999999988
Q ss_pred HHh
Q 042816 157 QTC 159 (163)
Q Consensus 157 ~~~ 159 (163)
+++
T Consensus 384 ~~~ 386 (389)
T PRK05957 384 KTI 386 (389)
T ss_pred Hhh
Confidence 765
No 11
>PRK06207 aspartate aminotransferase; Provisional
Probab=99.94 E-value=1.1e-25 Score=174.21 Aligned_cols=150 Identities=19% Similarity=0.283 Sum_probs=129.0
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CC
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GI 77 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 77 (163)
+||+||+|+||+++ |+++++.+.+.... .+++.+.|.++..+|+++ ..++++.++.++++++.+.+.|+++ ++
T Consensus 252 ~~~lpGlRiG~ii~-~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~~r~~l~~~L~~~~~~ 327 (405)
T PRK06207 252 TESLSGYRLGVAFG-SPAIIDRMEKLQAIVSLRAAGYSQAVLRTWFSEP---DGWMKDRIARHQAIRDDLLRVLRGVEGV 327 (405)
T ss_pred hccCcccceEEEEc-CHHHHHHHHHHHhHhccCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 47899999999999 89999999888764 467889999999999875 3456667777888999999999888 89
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
++.+|+||+|+|++++... .++.++++.|++++||.|.||+.|+...++++|||++. +.+++++++++|.++++
T Consensus 328 ~~~~p~gg~fl~~~l~~~~-----~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~~-~~~~l~~al~rl~~~l~ 401 (405)
T PRK06207 328 FVRAPQAGSYLFPRLPRLA-----VSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFSQ-DHAAAVAAAERIAQLIE 401 (405)
T ss_pred eecCCCeeEEEEEeCcccC-----CCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHH
Confidence 9999999999999998521 15788999988668999999999976567899999998 88999999999999998
Q ss_pred Hhh
Q 042816 158 TCK 160 (163)
Q Consensus 158 ~~~ 160 (163)
+++
T Consensus 402 ~~~ 404 (405)
T PRK06207 402 RYR 404 (405)
T ss_pred Hhh
Confidence 765
No 12
>PRK07681 aspartate aminotransferase; Provisional
Probab=99.94 E-value=1.1e-25 Score=173.88 Aligned_cols=143 Identities=24% Similarity=0.365 Sum_probs=128.6
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+||+||+|+||+++ |+++++.+.+... .+++|.+.|.++..+|+++ +.++++.++.++++++.+.+.|+++|++
T Consensus 240 ~~~~~GlRiG~~i~-~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 315 (399)
T PRK07681 240 SYSLAGSRIGYMIG-NEEIVRALTQFKSNTDYGVFLPIQKAACAALRNG---AAFCEKNRGIYQERRDTLVDGFRTFGWN 315 (399)
T ss_pred ccCCccceeEEEec-CHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 48999999999999 9999999988876 3689999999999999987 5788999999999999999999999998
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~ 154 (163)
+..|++|+|+|++++..+ ++.++++.|++++||.|.||+.|+..+++++||+++. +.+++++++++|.+
T Consensus 316 ~~~p~~g~f~~~~l~~~~------~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~~~~~l~~l~~ 384 (399)
T PRK07681 316 VDKPAGSMFVWAEIPKGW------TSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALVQ-DEEVLQQAVENIRN 384 (399)
T ss_pred ccCCCeeeEEEEECCCCC------CHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEecC-CHHHHHHHHHHHHH
Confidence 888999999999998643 6788999998878999999999986557899999996 88999999999987
No 13
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=99.94 E-value=1.3e-25 Score=174.99 Aligned_cols=145 Identities=17% Similarity=0.223 Sum_probs=128.2
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+|| ||+|+||+++ |+++++.+...... .++|.+.|.++..+|+++.+ +++++++++.|+++++.+.+.|++.|++
T Consensus 283 ~~~-~GlRiG~~i~-~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~-~~~l~~~~~~~~~~r~~~~~~L~~~~~~ 359 (431)
T PRK15481 283 ALG-PDLRLAFVAS-DSATSARLRLRLNSGTQWVSHLLQDLVYACLTDPEY-QARLAQARLFYAQRRQKLARALQQYGIA 359 (431)
T ss_pred ccC-CCceeEEEeC-CHHHHHHHHHHHhccccCCCHHHHHHHHHHHhCccH-HHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 478 9999999999 99999999776553 56899999999999999876 7889999999999999999999999988
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-CCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI-EPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
+..|+||+|+|++++. ++.++++.|.+ +||.|.||+.|+.. ..+++|||++..+++++++++++|.+++.
T Consensus 360 ~~~p~gg~f~~~~l~~--------~~~~~~~~l~~-~gV~v~pg~~f~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~~~ 430 (431)
T PRK15481 360 IPSPGDGLNLWLPLDT--------DSQATALTLAK-SGWLVREGEAFGVSAPSHGLRITLSTLNDAEINRLAADLHQALN 430 (431)
T ss_pred cccCCCeEEEEEECCC--------CHHHHHHHHHH-CCcEEecCCccccCCCCCeEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 8889999999999985 45788888875 89999999999643 25699999998788999999999998875
No 14
>PRK07683 aminotransferase A; Validated
Probab=99.94 E-value=1.9e-25 Score=171.89 Aligned_cols=151 Identities=17% Similarity=0.321 Sum_probs=130.9
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+||+||+|+||+++ ++++++.+.+.... .+++.+.|.++..+|.++ +.++++.++.++++++.+.+.|++.|+.
T Consensus 234 ~~~~pGlRiG~i~~-~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 309 (387)
T PRK07683 234 SHSMTGWRIGFLFA-PSYLAKHILKVHQYNVTCASSISQYAALEALTAG---KDDAKMMRHQYKKRRDYVYNRLISMGLD 309 (387)
T ss_pred cccCccceeEEEEc-CHHHHHHHHHHHHhccCCCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 48999999999999 99999999877553 457889999999999887 4678899999999999999999998999
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
+.+|+||+|+|+.++... .++.+++..+++++||.|.||+.|+..+++++||+++. +++++++++++|.+++++
T Consensus 310 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~~-~~~~~~~al~~l~~~l~~ 383 (387)
T PRK07683 310 VEKPTGAFYLFPSIGHFT-----MSSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYAY-SIETLKEGLDRLEAFLQQ 383 (387)
T ss_pred ccCCCeeEEEEEecccCC-----CCHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHh
Confidence 999999999999988521 16678888877779999999999986557899999998 899999999999999876
Q ss_pred hhh
Q 042816 159 CKS 161 (163)
Q Consensus 159 ~~~ 161 (163)
..+
T Consensus 384 ~~~ 386 (387)
T PRK07683 384 KAK 386 (387)
T ss_pred hcc
Confidence 543
No 15
>PRK06348 aspartate aminotransferase; Provisional
Probab=99.94 E-value=2.2e-25 Score=171.40 Aligned_cols=144 Identities=18% Similarity=0.345 Sum_probs=127.3
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CC
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GI 77 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 77 (163)
+||+||+|+||+++ |+++++.+..... .++++.+.|.++..++.+. ++++++.++.|+++++++.+.|+++ ++
T Consensus 235 ~~~l~GlRiG~~v~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~r~~~~~~~L~~~~~~ 310 (384)
T PRK06348 235 DFAMTGWRIGYVIA-PDYIIETAKIINEGICFSAPTISQRAAIYALKHR---DTIVPLIKEEFQKRLEYAYKRIESIPNL 310 (384)
T ss_pred ccCCccccceeeec-CHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 47899999999999 8999999988776 3678999999999999875 6888999999999999999999988 78
Q ss_pred ccccCCceeEEEeecCC-cccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSG-LISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~ 155 (163)
++.+|+||||+|++++. .+ ++.++++.+++++||.|.||+.|+..+++++||+++. +.+++++++++|.++
T Consensus 311 ~~~~p~gg~~~~~~~~~~~~------~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~al~~l~~~ 382 (384)
T PRK06348 311 SLHPPKGSIYAFINIKKTGL------SSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACTV-GIEVLEEAFNRIEKM 382 (384)
T ss_pred eeccCCeeEEEEEecccCCC------CHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEecC-CHHHHHHHHHHHHhh
Confidence 88999999999999974 33 6789999888768999999999986557899999986 899999999999764
No 16
>PRK06855 aminotransferase; Validated
Probab=99.94 E-value=3.7e-25 Score=172.49 Aligned_cols=157 Identities=15% Similarity=0.203 Sum_probs=126.6
Q ss_pred CCCCCceeEEEEEecC----H---HHHHHHHHhhc-ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042816 1 DLSLPGFRISVIYSYN----N---SVLAAAKKLAR-FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGL 72 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~----~---~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 72 (163)
+|++||+|+||+++++ + .+++.+..... ..+++.+.|.++..+++++.+ ++++++.++.|++|++.+.+.|
T Consensus 244 ~~~~pGlRiG~ii~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~~-~~~~~~~~~~~~~r~~~~~~~L 322 (433)
T PRK06855 244 ELPWPGSRCGWIEVYNADKDEVFKKYINSILNAKMIEVCSTTLPQMAIPRIMSHPEY-KNYLKERNKRYEKRSNIAYEKL 322 (433)
T ss_pred ccCCCcceEEEEEEeCCchhhHHHHHHHHHHHhhccccCCChHHHHHHHHhhcCCcH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999832 2 33444444433 246789999999999998766 7899999999999999999999
Q ss_pred hhc-CCccccCCceeEEEeecCCcccC-------CC--------------hhhHHHHHHHHHHhcCeEEcCCCCCCCCCC
Q 042816 73 RQL-GIECAKSNGGFYCWADMSGLISS-------YS--------------EKGELELWDKLLNVAKVNVTPGSSCHCIEP 130 (163)
Q Consensus 73 ~~~-g~~~~~~~~g~~~~~~~~~~~~~-------~~--------------~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~ 130 (163)
+++ |+.+.+|+||||+|+++|+.+.. .+ ..++.+++..+++++||.+.||+.|+.. .
T Consensus 323 ~~~~~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~-~ 401 (433)
T PRK06855 323 KDVPGLKVNRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTE-L 401 (433)
T ss_pred hcCCCeeccCCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCC-C
Confidence 987 88899999999999999874210 00 0136788888888899999999999743 4
Q ss_pred ceEEEEEecCChhHHHHHHHHHHHHHHHh
Q 042816 131 GWFSFSFTLLTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 131 ~~iRi~~~~~~~~~l~~~~~~l~~~~~~~ 159 (163)
+++|||++..+.+++++++++|.+++.++
T Consensus 402 ~~~Rls~~~~~~~~i~~~~~~l~~~~~~~ 430 (433)
T PRK06855 402 NGFRVTLLERDEEKFEWIYQTLAEKIEEY 430 (433)
T ss_pred CceEEEECCCcHHHHHHHHHHHHHHHHHH
Confidence 56999999778999999999999998764
No 17
>PRK06107 aspartate aminotransferase; Provisional
Probab=99.94 E-value=2.3e-25 Score=172.23 Aligned_cols=152 Identities=23% Similarity=0.331 Sum_probs=130.9
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CC
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GI 77 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 77 (163)
+||+||+|+||+++ |+++++.+...... ++++.+.|.++..+|+++ ++++++.++.|+++++.+.+.|+++ |+
T Consensus 242 ~~~~pGlRiG~~~~-~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~g~ 317 (402)
T PRK06107 242 TYAMTGWRIGYAAG-PADLIAAINKLQSQSSSCPSSISQAAAAAALNGD---QSFVTESVAVYKQRRDYALALLNAIPGL 317 (402)
T ss_pred hhcCcccceeeeec-CHHHHHHHHHHHHhcccCCChHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 47899999999999 99999999988863 679999999999999865 5789999999999999999999998 89
Q ss_pred ccccCCceeEEEeecCCcccC---C--ChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISS---Y--SEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERI 152 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~---~--~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l 152 (163)
++.+|+||||+|++++..... . ...++.+++..+++++||.|.||+.|+. ++++||+++. +.+++++++++|
T Consensus 318 ~~~~p~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~--~~~iRis~~~-~~e~l~~~l~~l 394 (402)
T PRK06107 318 SCLVPDGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGL--SPYFRLSIAT-SLETLEEACARI 394 (402)
T ss_pred cccCCCcceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCC--CCeEEEEeCC-CHHHHHHHHHHH
Confidence 999999999999998532110 0 0125678888888879999999999975 6899999997 899999999999
Q ss_pred HHHHHHh
Q 042816 153 RRISQTC 159 (163)
Q Consensus 153 ~~~~~~~ 159 (163)
.++++++
T Consensus 395 ~~~l~~~ 401 (402)
T PRK06107 395 ERAVAAL 401 (402)
T ss_pred HHHHHhc
Confidence 9998765
No 18
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=99.94 E-value=4.1e-25 Score=170.25 Aligned_cols=151 Identities=17% Similarity=0.307 Sum_probs=129.9
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+||+||+|+||+++ ++++++.+...... .++|.+.|.++..+|+++. .+....++.|+++++.+.+.|+++|++
T Consensus 238 ~~g~~GlRvG~~v~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~ 313 (391)
T PRK07309 238 SHAMTGWRIGLIFA-PAEFTAQLIKSHQYLVTAATTMAQFAAVEALTNGK---DDALPMKKEYIKRRDYIIEKMTDLGFK 313 (391)
T ss_pred hccCccceeEEEEe-CHHHHHHHHHHHhhcccCCChHHHHHHHHHHhCCh---hHHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 47899999999999 89999999877553 5789999999999999863 334678899999999999999999999
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
+.+|+||||+|+++|.... .++.++++.+++++||.|.||+.|+..+++++||+++. +.+++++++++|.+++++
T Consensus 314 ~~~p~gg~~~~~~l~~~~~----~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~~i~~l~~~~~~ 388 (391)
T PRK07309 314 IIKPDGAFYIFAKIPAGYN----QDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAA-SMETIKEAMKRLKEYMEE 388 (391)
T ss_pred ecCCCeeEEEEEECCCCCC----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHHh
Confidence 9999999999999986421 15678888877778999999999986667899999997 889999999999999987
Q ss_pred hh
Q 042816 159 CK 160 (163)
Q Consensus 159 ~~ 160 (163)
++
T Consensus 389 ~~ 390 (391)
T PRK07309 389 HA 390 (391)
T ss_pred hc
Confidence 64
No 19
>PRK08068 transaminase; Reviewed
Probab=99.94 E-value=3e-25 Score=170.87 Aligned_cols=143 Identities=22% Similarity=0.359 Sum_probs=125.1
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhccc--CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFS--SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+||+||+|+||+++ ++++++.+.+....+ +++++.|.++..++.++ .+++++.++.++++++.+.+.|+++|+.
T Consensus 241 ~~g~~GlRiG~~~~-~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~r~~~~~~L~~~g~~ 316 (389)
T PRK08068 241 TFNMAGWRVAFAVG-NESVIEAINLLQDHLFVSLFGAIQDAAIEALLSD---QSCVAELVARYESRRNAFISACREIGWE 316 (389)
T ss_pred ccCCccceeEeEec-CHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 48999999999999 999999998887753 55566888888888765 5788999999999999999999999999
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~ 154 (163)
+.+|+||||+|++++... ++.++++.|++++||.|.||+.|+..+++++||+++. +.+++++++++|.+
T Consensus 317 ~~~~~g~~~~~v~~~~~~------~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~al~~l~~ 385 (389)
T PRK08068 317 VDAPKGSFFAWMPVPKGY------TSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLLT-DEERLREAVERIGK 385 (389)
T ss_pred ccCCCeeEEEEEECCCCC------CHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEcC-CHHHHHHHHHHHHH
Confidence 999999999999998643 6789999998768999999999986557899999987 88899999999875
No 20
>PRK07324 transaminase; Validated
Probab=99.94 E-value=5.4e-25 Score=168.66 Aligned_cols=146 Identities=15% Similarity=0.215 Sum_probs=130.6
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CC
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GI 77 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 77 (163)
.||+||+|+||+++ |+++++.+.+.+.. ++++.+.|.++..++++. +.++++.++.++++++.+.+.|+++ ++
T Consensus 223 ~~~~~G~RiG~i~~-~~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~~---~~~l~~~~~~~~~~~~~l~~~l~~~~~~ 298 (373)
T PRK07324 223 TYSLPGIRVGWIAA-NEEVIDILRKYRDYTMICAGVFDDMLASLALEHR---DAILERNRKIVRTNLAILDEWVAKEPRV 298 (373)
T ss_pred hcCCccceeEEEec-CHHHHHHHHHHhCcEEecCChHHHHHHHHHHcCH---HHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 48999999999999 99999999998874 578889999999999875 6889999999999999999999988 78
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
.+..|+||+|+|+.++... ++.+|+++|++++||.|.||+.|+. ++++|||++. +++.+++++++|.++++
T Consensus 299 ~~~~p~gg~~~~i~~~~~~------~~~~~~~~ll~~~gv~v~pg~~F~~--~~~iRis~~~-~~~~l~~~l~rl~~~l~ 369 (373)
T PRK07324 299 SYVKPKAVSTSFVKLDVDM------PSEDFCLKLLKETGVLLVPGNRFDL--EGHVRIGYCC-DTETLKKGLKKLSEFLR 369 (373)
T ss_pred eEECCCceEEEEEEeCCCC------CHHHHHHHHHHhcCEEEECccccCC--CCeEEEEecC-CHHHHHHHHHHHHHHHH
Confidence 8899999999999987543 7789999998778999999999975 6799999998 88999999999999997
Q ss_pred Hh
Q 042816 158 TC 159 (163)
Q Consensus 158 ~~ 159 (163)
++
T Consensus 370 ~~ 371 (373)
T PRK07324 370 EF 371 (373)
T ss_pred hc
Confidence 64
No 21
>PRK09082 methionine aminotransferase; Validated
Probab=99.94 E-value=1.4e-25 Score=172.63 Aligned_cols=145 Identities=16% Similarity=0.200 Sum_probs=125.8
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+||+||+|+||+++ |+++++.+.+... .++++.+.|.+++.++.+. ++++++.++.|+++++++.+.|++.|++
T Consensus 237 ~~~~~G~RiG~iv~-~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 312 (386)
T PRK09082 237 TYHVTGWKVGYCVA-PAALSAEFRKVHQYNTFTVNTPAQLALADYLRAE---PEHYLELPAFYQAKRDRFRAALANSRFK 312 (386)
T ss_pred hccchhhhhhhhhC-CHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 47999999999999 8999999988875 3689999999999999743 5778899999999999999999998999
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC--CCCceEEEEEecCChhHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC--IEPGWFSFSFTLLTEKDIHVVMERIRR 154 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~--~~~~~iRi~~~~~~~~~l~~~~~~l~~ 154 (163)
+.+|+||||+|+++++.- + .++.++++.|++++||.+.||+.|+. .+.+++||+++. +++++++++++|++
T Consensus 313 ~~~~~g~~~~~~~~~~~~---~-~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~~-~~~~l~~~~~rl~~ 385 (386)
T PRK09082 313 LLPCEGTYFQLVDYSAIS---D-LDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFAK-QEETLDAAAERLCQ 385 (386)
T ss_pred ccCCCeeEEEEEeccccC---C-CCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEecC-CHHHHHHHHHHHhh
Confidence 999999999999998410 0 26789999888779999999998863 236899999998 88999999999875
No 22
>PRK08361 aspartate aminotransferase; Provisional
Probab=99.93 E-value=2.4e-25 Score=171.48 Aligned_cols=149 Identities=19% Similarity=0.326 Sum_probs=131.4
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CC
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GI 77 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 77 (163)
+||+||+|+||+++ ++++++.+.+... .++++.+.|.++..+|+++.+ .+++++.++.++++++.+.+.|+++ |+
T Consensus 238 ~~~~~GlRiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 315 (391)
T PRK08361 238 TFAMTGWRLGFVIA-PEQVIKDMIKLHAYIIGNVASFVQIAGIEALRSKES-WKAVEEMRKEYNERRKLVLKRLKEMPHI 315 (391)
T ss_pred hcCCcHhhhhhhcc-CHHHHHHHHHHHhhhccCCChHHHHHHHHHhcCCcc-cHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 48999999999999 8999999887765 367899999999999998754 4789999999999999999999998 89
Q ss_pred ccccCCceeEEEeecCC-cccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSG-LISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
++.+|+||||+|++++. .+ ++.++++.|++++||.|.||+.|+..+++++||+++. +++++++++++|.+++
T Consensus 316 ~~~~p~g~~~~~~~l~~~~~------~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~al~~l~~~l 388 (391)
T PRK08361 316 KVFEPKGAFYVFANIDETGM------SSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYAT-SKEKLIEAMERMEKAL 388 (391)
T ss_pred eecCCCEEEEEEEECCCCCC------CHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHH
Confidence 99999999999999984 22 6788999888768999999999986567899999997 8889999999999988
Q ss_pred HH
Q 042816 157 QT 158 (163)
Q Consensus 157 ~~ 158 (163)
++
T Consensus 389 ~~ 390 (391)
T PRK08361 389 EE 390 (391)
T ss_pred hc
Confidence 65
No 23
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=99.93 E-value=7.8e-25 Score=168.21 Aligned_cols=143 Identities=23% Similarity=0.388 Sum_probs=126.5
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
.||+||+|+||+++ |+++++.+...... .+++.+.|.++..++++. ++++++.++.++++++.+.+.|+++|+.
T Consensus 238 ~~g~~GlRiG~~i~-~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 313 (383)
T TIGR03540 238 TYNMTGWRIGMAVG-NADLIAGLGKVKTNVDSGVFQAIQYAAIAALNGP---QDVVKEIRKIYQRRRDLLLEALKKIGID 313 (383)
T ss_pred ccCCccceeeEEeC-CHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 47999999999999 99999999887763 467889999999999886 6888999999999999999999999999
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~ 154 (163)
+.+|++|+|+|++++..+ ++.++++.|++++||.|.||+.|+..+++++||+++. +.+++++++++|.+
T Consensus 314 ~~~~~~~~~~~~~l~~~~------~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~ 382 (383)
T TIGR03540 314 VEKPKATFYVWVPVPEGY------TSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLTV-PDERLEEAVARIKK 382 (383)
T ss_pred ecCCCcceEEEEECCCCC------CHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEecC-CHHHHHHHHHHHhh
Confidence 999999999999998654 6789999988768999999999975557899999996 88899999988864
No 24
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=99.93 E-value=8.7e-25 Score=171.12 Aligned_cols=148 Identities=20% Similarity=0.325 Sum_probs=134.7
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc---CCc
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL---GIE 78 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---g~~ 78 (163)
+||+|+||+++ |+++++.+...+.. .++|.+.|.+++.++.++.+ ++|++++|+.|++|++++.+.|+++ +++
T Consensus 302 ~PglRlG~vv~-p~~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~G~~-~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~ 379 (459)
T COG1167 302 APGLRLGYVVA-PPELIEKLLRLKQAADLGPSSLSQAALAAFLLSGHY-DRHLRRLRREYARRRDALLEALAEYLPELAT 379 (459)
T ss_pred ccccceeeeeC-CHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCee
Confidence 69999999999 99999999988884 68999999999999998777 9999999999999999999999998 489
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcC-CCCCCCCC--CceEEEEEecCChhHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTP-GSSCHCIE--PGWFSFSFTLLTEKDIHVVMERIRRI 155 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~p-g~~f~~~~--~~~iRi~~~~~~~~~l~~~~~~l~~~ 155 (163)
+..|.||||+|+++|+.+ ++.++...+++ +||.+.| |..|...+ .+++|++++..+.+++++++++|.++
T Consensus 380 ~~~p~gG~flwl~l~~~~------~~~~l~~~a~~-~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~~~e~i~~gi~~l~~~ 452 (459)
T COG1167 380 WTRPEGGLFLWLELPEGI------DARELLAAALE-KGVVVTPLGSAFSADGDPRNGLRLSFSSPSEEEIEEGIKRLAAL 452 (459)
T ss_pred eecCCceEEEEEEcCCCC------CHHHHHHHHHH-CCCEEEcCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999876 88999998887 8999999 99987543 57999999998899999999999999
Q ss_pred HHHhh
Q 042816 156 SQTCK 160 (163)
Q Consensus 156 ~~~~~ 160 (163)
+.++.
T Consensus 453 ~~~~~ 457 (459)
T COG1167 453 LREAA 457 (459)
T ss_pred HHHHh
Confidence 88764
No 25
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=99.93 E-value=4.5e-25 Score=169.83 Aligned_cols=146 Identities=19% Similarity=0.323 Sum_probs=119.3
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhccc--CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFS--SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+||+||+|+||+++ |+++++.+.+....+ +.++..|.++...+.+. ++++++.++.|+++++.+.+.|+++|+.
T Consensus 240 ~~g~~GlRiG~~v~-~~~li~~l~~~~~~~~~~~~~~~~~~a~~~l~~~---~~~l~~~~~~~~~~r~~l~~~L~~~~~~ 315 (388)
T PRK07366 240 SYNMGGFRIGFAIG-NAQLIQALRQVKAVVDFNQYRGILNGAIAALTGP---QATVQQTVQIFRQRRDAFINALHQIGWP 315 (388)
T ss_pred ccCCcchhheehcC-CHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 48999999999999 999999999887753 33333344444444433 5789999999999999999999998888
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~ 155 (163)
+..|+||+|+|++++..+. .++.++++.+++++||.|.||+.|+...++|+||+++. +++++++++++|.++
T Consensus 316 ~~~p~~g~f~~~~~~~~~~----~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~~l~rl~~~ 387 (388)
T PRK07366 316 VPLPEATMYVWAKLPEPWQ----GNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALVH-DPDILEEAVERIAAF 387 (388)
T ss_pred ccCCCeeEEEEEECCcccC----CCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEecC-CHHHHHHHHHHHHHh
Confidence 8889999999999986320 14678888887778999999999975556899999997 889999999999875
No 26
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=99.93 E-value=8.2e-25 Score=168.18 Aligned_cols=143 Identities=27% Similarity=0.419 Sum_probs=125.6
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
.||+||+|+||+++ |+++++.+.+.... .+++.+.|.++..++.+. +.++++.++.++++++.+.+.|++.|++
T Consensus 240 ~~g~~GlRiG~~i~-~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 315 (385)
T PRK09276 240 TYNMTGWRIGFAVG-NADLIAGLGKVKSNVDSGVFQAIQEAGIAALNGP---QEVVEELRKIYQERRDILVEGLRKLGLE 315 (385)
T ss_pred hcCCcchhheeeeC-CHHHHHHHHHHHhhccCCCCHHHHHHHHHHHcCc---HHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 47999999999999 99999999887764 457778999999999864 6888999999999999999999999999
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~ 154 (163)
+.+|+||||+|+++++.. ++.++++.|++++||.|.||+.|+..+++++||+++. +++++.+++++|.+
T Consensus 316 ~~~~~~~~~~~v~~~~~~------~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~ 384 (385)
T PRK09276 316 VEPPKATFYVWAPVPKGY------TSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALTV-PDERIEEAVERIKK 384 (385)
T ss_pred ccCCCcceEEEEECCCCC------CHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeCC-CHHHHHHHHHHHhh
Confidence 999999999999998653 6789999988768999999999976557899999996 88899999998864
No 27
>PRK08175 aminotransferase; Validated
Probab=99.93 E-value=1e-24 Score=168.22 Aligned_cols=150 Identities=23% Similarity=0.367 Sum_probs=130.3
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+||+||+|+||+++ |+++++.+.+.... ++++++.|.++..++.+. +.+++++++.|+++++++.+.|+..|++
T Consensus 238 ~~g~pGlRiG~~~~-~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 313 (395)
T PRK08175 238 SYNMAGWRIGFMVG-NPELVSALARIKSYHDYGTFTPLQVAAIAALEGD---QQCVRDIAEQYKRRRDVLVKGLHEAGWM 313 (395)
T ss_pred cccCcchhheeeeC-CHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 47999999999999 99999999888763 577888999899998765 6789999999999999999999999988
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
+.+|++|+|+|++++..... .++.++++.+++++||.|.||+.|+..+++++||+++. +.+.+++++++|.+++.+
T Consensus 314 ~~~p~~g~~i~i~l~~~~~~---~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~~-~~~~~~~al~~l~~~l~~ 389 (395)
T PRK08175 314 VEMPKASMYVWAKIPEPYAA---MGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIE-NRDRIRQAIRGIKAMFRA 389 (395)
T ss_pred ccCCCEEEEEEEECCcccCC---CCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeCC-CHHHHHHHHHHHHHHHHh
Confidence 88899999999999864310 14688998888778999999999976557899999986 889999999999998865
No 28
>PRK08960 hypothetical protein; Provisional
Probab=99.93 E-value=1.5e-24 Score=166.88 Aligned_cols=148 Identities=22% Similarity=0.350 Sum_probs=126.9
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+||+||+|+||+++ |+++++.+.++... .++|.+.|.++..+|.+. . ++++++.++.|+++++.+.+.|+++|+.
T Consensus 235 ~~g~~GlRiG~~~~-~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~-~-~~~l~~~~~~~~~~~~~l~~~L~~~~~~ 311 (387)
T PRK08960 235 YFGMTGWRLGWLVA-PPAAVPELEKLAQNLYISASTPAQHAALACFEPE-T-LAILEARRAEFARRRDFLLPALRELGFG 311 (387)
T ss_pred ccCCcccEEEEEEc-CHHHHHHHHHHHhhhccCCCHHHHHHHHHHhhcC-c-HHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 47999999999999 89999999888763 578999999999999764 2 6889999999999999999999998876
Q ss_pred c-ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-CCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 79 C-AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI-EPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 79 ~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
+ ..|+||+|+|+++++.. .++.++++.|++++||.|.||+.|+.. .++|+||+++. +.+++++++++|.+++
T Consensus 312 ~~~~p~g~~f~~~~~~~~~-----~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~-~~~~l~~al~~l~~~~ 385 (387)
T PRK08960 312 IAVEPQGAFYLYADISAFG-----GDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQ-SLPRLQEAVERIARGL 385 (387)
T ss_pred CCcCCCeeEEEEEeccccC-----CCHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecC-CHHHHHHHHHHHHHHH
Confidence 5 57899999999998621 167889988887789999999999753 35799999998 8899999999998876
Q ss_pred H
Q 042816 157 Q 157 (163)
Q Consensus 157 ~ 157 (163)
.
T Consensus 386 ~ 386 (387)
T PRK08960 386 R 386 (387)
T ss_pred h
Confidence 4
No 29
>PRK05942 aspartate aminotransferase; Provisional
Probab=99.93 E-value=1e-24 Score=168.18 Aligned_cols=145 Identities=17% Similarity=0.307 Sum_probs=127.2
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+||+||+|+||+++ ++++++.+..... .++++++.|.++..+|+.. ++++++.++.|+++++.+.+.|+..|++
T Consensus 244 ~~~~~GlRiG~i~~-~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 319 (394)
T PRK05942 244 TYNMAGWRVGFVVG-NRHIIQGLRTLKTNLDYGIFSALQKAAETALQLP---DSYLQQVQERYRTRRDFLIQGLGELGWN 319 (394)
T ss_pred ccCChhhheeeeec-CHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 48999999999999 9999999998876 3678889999999999764 6788999999999999999999988999
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
+.+|+||+|+|++++..+ ++.+++..+++++||.|.||+.|+..+++|+||+++. +.+.+.+++++|.++-
T Consensus 320 ~~~~~~~~f~~~~~~~~~------~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~~ 390 (394)
T PRK05942 320 IPPTKATMYLWVPCPVGM------GSTDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLIA-DCDRLGEALDRLKQAG 390 (394)
T ss_pred ecCCCeeeEEEEECCCCC------CHHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEecC-CHHHHHHHHHHHHHhh
Confidence 999999999999998643 6678888777779999999999976557899999986 7889999999997643
No 30
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=99.93 E-value=1.3e-24 Score=168.31 Aligned_cols=145 Identities=21% Similarity=0.252 Sum_probs=122.3
Q ss_pred CCCCCceeEEEEEecCHHHHHHH------------HHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAA------------KKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYV 66 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~------------~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 66 (163)
+||+||+|+||+++ |+++++.+ ..... ..++|.+.|.++..++.+.. ++++++.++.|+++++
T Consensus 250 ~~~~pGlRiG~~i~-~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~--~~~~~~~~~~~~~~r~ 326 (409)
T PRK07590 250 TAGFTGTRCAYTVV-PKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEG--KAQIKELIDYYMENAK 326 (409)
T ss_pred ccCCcCceeEEEEc-CHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCc--HHHHHHHHHHHHHHHH
Confidence 48999999999999 88888722 12122 24689999999999997642 5789999999999999
Q ss_pred HHHHHhhhcCCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHH
Q 042816 67 KFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIH 146 (163)
Q Consensus 67 ~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~ 146 (163)
.+.+.|+++|+++..|+||+|+|++++..+ ++.++++.|++++||.+.||+.|+..+++++||++.. ++++++
T Consensus 327 ~l~~~L~~~~~~~~~~~g~~f~wi~~~~~~------~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~ 399 (409)
T PRK07590 327 IIREGLESAGFEVYGGVNAPYIWVKTPDGM------SSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLSAFG-SRENVL 399 (409)
T ss_pred HHHHHHHhcCCceecCCcceEEEEECCCCC------CHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEEccC-CHHHHH
Confidence 999999999988888999999999998653 6788998888778999999999976557899999865 889999
Q ss_pred HHHHHHHHH
Q 042816 147 VVMERIRRI 155 (163)
Q Consensus 147 ~~~~~l~~~ 155 (163)
+++++|.++
T Consensus 400 ~~l~rl~~~ 408 (409)
T PRK07590 400 EAMERIKKA 408 (409)
T ss_pred HHHHHHHhh
Confidence 999999875
No 31
>PRK12414 putative aminotransferase; Provisional
Probab=99.93 E-value=1.8e-24 Score=166.37 Aligned_cols=144 Identities=16% Similarity=0.201 Sum_probs=121.3
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
.||+||+|+||+++ ++++++.+.+... .+++|.+.|.++..+|.++.+ ..+.++.|+++++.+.+.|+++|++
T Consensus 236 ~~~~pGlRiG~~v~-~~~l~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~~----~~~~~~~~~~~r~~l~~~L~~~g~~ 310 (384)
T PRK12414 236 SYHVTGWRVGYCLA-PAELMDEIRKVHQFMVFSADTPMQHAFAEALAEPAS----YLGLGAFYQRKRDLLARELAGSRFE 310 (384)
T ss_pred cccCccceEEEEec-CHHHHHHHHHHHhheecCCCcHHHHHHHHHhcCChH----HHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 47899999999999 8999999988875 368899999999999988632 3467889999999999999999999
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCC--CceEEEEEecCChhHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIE--PGWFSFSFTLLTEKDIHVVMERIRR 154 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~--~~~iRi~~~~~~~~~l~~~~~~l~~ 154 (163)
+.+|+||||+|+++++... .++.+++..+++++||.|.||+.|+..+ .+++||+++. +++++++++++|.+
T Consensus 311 ~~~~~gg~~~~~~~~~~~~----~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~~-~~~~~~~~~~rl~~ 383 (384)
T PRK12414 311 LLPSEGSFFMLARFRHFSD----ESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSK-DDATLVEGARRLCS 383 (384)
T ss_pred ecCCCcceEEEEcccccCC----CCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEecC-CHHHHHHHHHHHhh
Confidence 9999999999999875210 1456777667777999999999996432 5899999998 88999999999874
No 32
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=99.93 E-value=3e-24 Score=167.18 Aligned_cols=156 Identities=17% Similarity=0.328 Sum_probs=126.0
Q ss_pred CCCCCceeEEEEEec-CHHHH------HHHHHhhcc-cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042816 1 DLSLPGFRISVIYSY-NNSVL------AAAKKLARF-SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGL 72 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~-~~~~~------~~~~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 72 (163)
.|++||||+||++++ |+.++ +.+...... .+++.+.|.++..+|.+.. +++++++++.++++++.+++.|
T Consensus 263 ~~~~pG~RlG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~L 340 (430)
T PLN00145 263 RWVVPGWRLGWIATCDPNGILKETKVVDSIRNYLNISTDPATFVQGAIPQIIANTK--EEFFTKTLGLLKETADICYEKI 340 (430)
T ss_pred ccCCCCeeEEEEEEecchhhhhhhHHHHHHHHHhcccCCCCHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999983 34433 344444433 3578999999999998742 6889999999999999999999
Q ss_pred hhc-CCcc-ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHH
Q 042816 73 RQL-GIEC-AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVME 150 (163)
Q Consensus 73 ~~~-g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~ 150 (163)
+.+ |+++ ..|+||||+|++++.... .+..++.+++..|++++||.+.||+.|+. ++|+||+++. +.+.++++++
T Consensus 341 ~~~~g~~~~~~P~ga~y~~v~l~~~~~-~~~~~~~~~~~~ll~~~gV~v~pG~~fg~--~~~lRis~~~-~~~~l~~al~ 416 (430)
T PLN00145 341 KEIKCITCPHKPEGSMFVMVKLDLSCL-SGIKDDMDFCCKLAKEESVVVLPGSALGM--KNWLRITFAI-DPPSLEDGLE 416 (430)
T ss_pred hcCCCCCCCcCCCeeeEEEeccChhhc-CCCCCHHHHHHHHHHhCCEEEeCccccCC--CCeEEEEeCC-CHHHHHHHHH
Confidence 998 8875 479999999999974210 01125678998888888999999999985 6899999997 8999999999
Q ss_pred HHHHHHHHhhhc
Q 042816 151 RIRRISQTCKSH 162 (163)
Q Consensus 151 ~l~~~~~~~~~~ 162 (163)
+|.+++.++++.
T Consensus 417 rl~~~~~~~~~~ 428 (430)
T PLN00145 417 RLKSFCLRHAKL 428 (430)
T ss_pred HHHHHHHHhccc
Confidence 999999988764
No 33
>PRK08912 hypothetical protein; Provisional
Probab=99.93 E-value=2.3e-24 Score=165.84 Aligned_cols=150 Identities=19% Similarity=0.301 Sum_probs=127.0
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+||+||+|+||+++ ++++++.+.+.... ++++++.|.++..++... ++++++.++.++++++++.+.|+.+|++
T Consensus 233 ~~g~~GlRiG~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 308 (387)
T PRK08912 233 IFSLTGWKVGFVCA-APPLLRVLAKAHQFLTFTTPPNLQAAVAYGLGKP---DDYFEGMRADLARSRDRLAAGLRRIGFP 308 (387)
T ss_pred hccCcCceeEEEec-CHHHHHHHHHHHhhccccCChHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 47999999999999 89999999887764 567778898888888654 5778899999999999999999999999
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC--CCCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC--IEPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~--~~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
+.+|+||||+|++++.... ..++.++++.|++++||.|.||..|+. ..++|+||+++. +.+.+++++++|.+++
T Consensus 309 ~~~~~g~~~l~~~l~~~~~---~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~-~~~~l~~~l~rl~~~l 384 (387)
T PRK08912 309 VLPSQGTYFLTVDLAPLGL---AEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAK-RDATLDEAVERLAAAR 384 (387)
T ss_pred ccCCCcceEEEecccccCC---CCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEeC-CHHHHHHHHHHHHHHH
Confidence 9999999999999975100 026788999988778999999999963 236899999998 7899999999999877
Q ss_pred HH
Q 042816 157 QT 158 (163)
Q Consensus 157 ~~ 158 (163)
.+
T Consensus 385 ~~ 386 (387)
T PRK08912 385 RR 386 (387)
T ss_pred hc
Confidence 54
No 34
>PLN02656 tyrosine transaminase
Probab=99.93 E-value=3.7e-24 Score=165.80 Aligned_cols=155 Identities=14% Similarity=0.255 Sum_probs=125.5
Q ss_pred CCCCCceeEEEEEec-------CHHHHHHHHHhhcc-cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042816 1 DLSLPGFRISVIYSY-------NNSVLAAAKKLARF-SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGL 72 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~-------~~~~~~~~~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 72 (163)
+|++||+|+||++++ ++++++.+.+.... .++|.+.|.++..+|++.. +.++++.++.++++++.+.+.|
T Consensus 242 ~f~~pGlRiG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~--~~~~~~~~~~~~~~r~~~~~~L 319 (409)
T PLN02656 242 RWIVPGWRLGWFVTTDPSGSFRDPKIVERIKKYFDILGGPATFIQAAVPTILEQTD--ESFFKKTINILKQSSDICCDRI 319 (409)
T ss_pred hccCcceeEEEEEEeCcccccccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999994 25788888877654 4688999999999998642 5788999999999999999999
Q ss_pred hhc-CCc-cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHH
Q 042816 73 RQL-GIE-CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVME 150 (163)
Q Consensus 73 ~~~-g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~ 150 (163)
+.+ ++. +.+|+||+|+|++++..... +..++.+++..+++++||.|.||+.|+. ++++||+++. ++++++++++
T Consensus 320 ~~~~~~~~~~~p~gg~~~w~~l~~~~~~-~~~~~~~~~~~~l~~~gV~v~pg~~fg~--~~~iRi~~~~-~~e~l~eal~ 395 (409)
T PLN02656 320 KEIPCITCPHKPEGSMAVMVKLNLSLLE-DISDDIDFCFKLAREESVIILPGTAVGL--KNWLRITFAA-DPSSLEEALG 395 (409)
T ss_pred hhCCCCcCCcCCCeEEEEEEecchhhcC-CCCCHHHHHHHHHHhCCEEEecchhcCC--CCeEEEEeCC-CHHHHHHHHH
Confidence 987 443 46899999999999742100 0013556666666679999999999974 6899999997 8999999999
Q ss_pred HHHHHHHHhhh
Q 042816 151 RIRRISQTCKS 161 (163)
Q Consensus 151 ~l~~~~~~~~~ 161 (163)
+|.+++.++..
T Consensus 396 rl~~~~~~~~~ 406 (409)
T PLN02656 396 RIKSFYLRHSK 406 (409)
T ss_pred HHHHHHHHhcc
Confidence 99999887654
No 35
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=99.93 E-value=3.6e-24 Score=166.19 Aligned_cols=151 Identities=16% Similarity=0.245 Sum_probs=126.7
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHH-HHHHHHHHHHHHHHHhhhc---
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFINI-NRERLRRLYVKFVAGLRQL--- 75 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~--- 75 (163)
+++||+|+||+++ |+++++.+...... .++|.+.|.++..+|+++++ .++..+ .++.|+++++.+.+.|.+.
T Consensus 250 ~~~pGlRiG~~i~-~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~r~~~~~~~L~~~l~~ 327 (416)
T PRK09440 250 LGLPGVRCGIVIA-DEEIIEALSNMNGIISLAPGRLGPAIAAEMIESGDL-LRLSETVIRPFYRQKVQLAIALLRRYLPD 327 (416)
T ss_pred cCCCcceEEEEeC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHhccchH-HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3799999999999 99999999888774 57899999999999999876 566655 7899999999999999765
Q ss_pred -CCccccCCceeEEEeecCC-cccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-------CCceEEEEEecCChhHHH
Q 042816 76 -GIECAKSNGGFYCWADMSG-LISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI-------EPGWFSFSFTLLTEKDIH 146 (163)
Q Consensus 76 -g~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-------~~~~iRi~~~~~~~~~l~ 146 (163)
++++.+|+||+|+|+++++ .. ++.++++.|.+ +||.|.||+.|+.. ..+++|||++. +.++++
T Consensus 328 ~~~~~~~p~gg~fiw~~~~~~~~------~~~~~~~~l~~-~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~-~~~~l~ 399 (416)
T PRK09440 328 EPCLIHKPEGAIFLWLWFKDLPI------TTEELYQRLKA-RGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQ-DDEEIE 399 (416)
T ss_pred CCeEEecCCCceEEEEECCCCCC------CHHHHHHHHHH-CCEEEechHhhCCCCccccCCcCceEEEEecC-CHHHHH
Confidence 3566789999999999986 23 56888887755 89999999998532 13699999987 889999
Q ss_pred HHHHHHHHHHHHhhhc
Q 042816 147 VVMERIRRISQTCKSH 162 (163)
Q Consensus 147 ~~~~~l~~~~~~~~~~ 162 (163)
+++++|.+++++....
T Consensus 400 ~~i~~l~~~~~~~~~~ 415 (416)
T PRK09440 400 KGIAILAEEVEKAYAE 415 (416)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999876543
No 36
>PRK06108 aspartate aminotransferase; Provisional
Probab=99.93 E-value=2.7e-24 Score=165.05 Aligned_cols=146 Identities=25% Similarity=0.450 Sum_probs=129.0
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CC
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GI 77 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 77 (163)
+||+||+|+||+++ ++++++.+.+.... .+++.+.|.++..+|.++ ++++++.++.++++++.+.+.|+++ |+
T Consensus 233 ~~g~~G~RiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 308 (382)
T PRK06108 233 NWAMTGWRLGWLVA-PPALGQVLEKLIEYNTSCVAQFVQRAAVAALDEG---EDFVAELVARLRRSRDHLVDALRALPGV 308 (382)
T ss_pred hccCcccceeeeeC-CHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 47999999999999 89999999877653 568899999999999886 5778899999999999999999988 89
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
++..|+||+|+|++++... ++.++++.|++++||.+.||+.|+..+++++|||++. +.+++++++++|.++++
T Consensus 309 ~~~~p~~g~~~~~~l~~~~------~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~~l~ 381 (382)
T PRK06108 309 EVAKPDGAMYAFFRIPGVT------DSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR-DPARLDEAVERLRRFLA 381 (382)
T ss_pred cccCCCeeEEEEEeCCCCC------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHh
Confidence 9999999999999998643 6788999988778999999999975557899999998 99999999999998775
No 37
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=99.92 E-value=6.3e-24 Score=164.68 Aligned_cols=154 Identities=20% Similarity=0.337 Sum_probs=128.9
Q ss_pred CCCCCceeEEEEEec-----CHHHHHHHHHhhcc-cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042816 1 DLSLPGFRISVIYSY-----NNSVLAAAKKLARF-SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ 74 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~-----~~~~~~~~~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (163)
+||+||+|+||++++ ++++++.+.+.... +++|.+.|.++..++.+. . +.++++.++.++++++.+.+.|++
T Consensus 250 ~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~-~-~~~~~~~~~~~~~~r~~l~~~L~~ 327 (412)
T PTZ00433 250 NLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLGMLVCGPCSVVQAALGEALLNT-P-QEHLEQIVAKLEEGAMVLYNHIGE 327 (412)
T ss_pred hcCCCCeeEEEEEEeCCcccHHHHHHHHHHHhhccCCCChHHHHHHHHHHhcC-c-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 479999999999972 24688888776653 689999999999999864 2 688999999999999999999998
Q ss_pred c-CCccccCCceeEEEeecCCc-ccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHH
Q 042816 75 L-GIECAKSNGGFYCWADMSGL-ISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERI 152 (163)
Q Consensus 75 ~-g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l 152 (163)
+ |+++..|+||+|+|++++.. .. +..++.++++.|++++||.|.||+.|+. ++++||+++. +++++++++++|
T Consensus 328 ~~~~~~~~p~gg~f~~~~l~~~~~~--~~~~~~~~~~~ll~~~gV~v~pg~~f~~--~~~iRis~~~-~~e~l~~al~~l 402 (412)
T PTZ00433 328 CIGLSPTMPRGSMFLMSRLDLEKFR--DIKSDVEFYEKLLEEENVQVLPGEIFHM--PGFTRLTISR-PVEVLREAVERI 402 (412)
T ss_pred CCCCcccCCCeeEEEEEEechhhcC--CCCCHHHHHHHHHHhcCEEEeCccccCC--CCeEEEEecC-CHHHHHHHHHHH
Confidence 7 88889999999999998741 10 0014688999998768999999999975 6899999998 789999999999
Q ss_pred HHHHHHhhh
Q 042816 153 RRISQTCKS 161 (163)
Q Consensus 153 ~~~~~~~~~ 161 (163)
.++++++++
T Consensus 403 ~~~~~~~~~ 411 (412)
T PTZ00433 403 KAFCERHKK 411 (412)
T ss_pred HHHHHHhcc
Confidence 999987764
No 38
>PTZ00377 alanine aminotransferase; Provisional
Probab=99.92 E-value=9.3e-24 Score=166.54 Aligned_cols=158 Identities=16% Similarity=0.182 Sum_probs=124.4
Q ss_pred CCCCceeEEEEEe--cCHHHHHHHHHhhcc-cCCChHHHHHHHHhcCCh-----HH--HHHHHHHHHHHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYS--YNNSVLAAAKKLARF-SSVSAPSQNLLVSMLSDT-----KF--VQKFININRERLRRLYVKFVAG 71 (163)
Q Consensus 2 ~~~~G~RiG~~i~--~~~~~~~~~~~~~~~-~~~s~~~q~~~~~~l~~~-----~~--~~~~~~~~~~~~~~~~~~l~~~ 71 (163)
||+||||+||+++ .|+++++.+.+.... +++|.++|.++..+++++ .+ ..+++++.++.|++|++.+.+.
T Consensus 302 ~~~~GlRiG~~~~~~~p~~li~~l~~~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~ 381 (481)
T PTZ00377 302 IGECGRRGGYFELTNIPPEVREQIYKLASINLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDE 381 (481)
T ss_pred ccCCcCceEEEEEeCCCHHHHHHHHHHhheecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999996 278999999887754 579999999999999642 11 1345566666789999999999
Q ss_pred hhhc-CCccccCCceeEEEeecC--CcccC----CChhhHHHHHHHHHHhcCeEEcCCCCCCCC-CCceEEEEEecCChh
Q 042816 72 LRQL-GIECAKSNGGFYCWADMS--GLISS----YSEKGELELWDKLLNVAKVNVTPGSSCHCI-EPGWFSFSFTLLTEK 143 (163)
Q Consensus 72 l~~~-g~~~~~~~~g~~~~~~~~--~~~~~----~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-~~~~iRi~~~~~~~~ 143 (163)
|+++ |+++.+|+||||+|++++ ..... .+..++..++..+++++||.|.||+.|+.. +++++|||++. +.+
T Consensus 382 L~~~~g~~~~~p~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~~-~~e 460 (481)
T PTZ00377 382 LNKIEGVSCQPVEGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITILP-PEE 460 (481)
T ss_pred HhcCCCcEeecCCeeEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEECC-CHH
Confidence 9998 899999999999998764 21100 001134567777888799999999999853 36799999995 889
Q ss_pred HHHHHHHHHHHHHHHhh
Q 042816 144 DIHVVMERIRRISQTCK 160 (163)
Q Consensus 144 ~l~~~~~~l~~~~~~~~ 160 (163)
++++++++|.++++++.
T Consensus 461 ~l~~~l~rl~~~~~~~~ 477 (481)
T PTZ00377 461 QIEEMVKKIKEFHESFM 477 (481)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988654
No 39
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=99.92 E-value=5.1e-24 Score=164.72 Aligned_cols=145 Identities=19% Similarity=0.187 Sum_probs=120.9
Q ss_pred CCCCCceeEEEEEecCHHHH--------HHHHHhh-c-ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVIYSYNNSVL--------AAAKKLA-R-FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVA 70 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~--------~~~~~~~-~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (163)
.||+||+|+||+++ |++++ +.+.... . ..++|.+.|.++..++.++.+ .++.+.++.|+++++.+.+
T Consensus 247 ~~g~pGlRiG~~i~-~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~ 323 (402)
T TIGR03542 247 TAGFTGVRLGWTVV-PKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGL--QPILEAISYYMENARILRK 323 (402)
T ss_pred ccCCCCcceEEEEe-cHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcch--hHHHHHHHHHHHHHHHHHH
Confidence 47999999999999 88876 3332222 2 346889999999999987643 4567788999999999999
Q ss_pred HhhhcCCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHH
Q 042816 71 GLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVME 150 (163)
Q Consensus 71 ~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~ 150 (163)
.|++.|+++.+|.+|+|+|++++..+ ++.+++..|++++||.|.||+.|+..+++|+||+++. ++++++++++
T Consensus 324 ~L~~~~~~~~~~~~~~f~~v~l~~~~------~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~l~~~l~ 396 (402)
T TIGR03542 324 ALEAAGFKVYGGEHAPYLWVKTPEGI------SSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSAFG-KRENIVEACE 396 (402)
T ss_pred HHHhcCceecCCCceeEEEEECCCCC------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHHHH
Confidence 99998888888899999999998654 6788999998768999999999976557899999877 8899999999
Q ss_pred HHHHH
Q 042816 151 RIRRI 155 (163)
Q Consensus 151 ~l~~~ 155 (163)
+|.++
T Consensus 397 ~l~~~ 401 (402)
T TIGR03542 397 RIKEA 401 (402)
T ss_pred HHHhh
Confidence 99875
No 40
>PRK07568 aspartate aminotransferase; Provisional
Probab=99.92 E-value=7.8e-24 Score=163.29 Aligned_cols=150 Identities=23% Similarity=0.310 Sum_probs=128.9
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc-cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF-SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~ 78 (163)
+||+||+|+||++++++++++.+.+.... +++|.+.|.+++.+++++ +.++++.++.|+++++.+.+.|+++ |+.
T Consensus 236 ~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 312 (397)
T PRK07568 236 RYSACGARIGCLISKNKELIAAAMKLCQARLSPPTLEQIGAAALLDTP---ESYFDEVREEYKKRRDILYEELNKIPGVV 312 (397)
T ss_pred hccCCCcceEEEecCCHHHHHHHHHHhhccCCCCcHHHHHHHHHhhCC---HHHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 47899999999999557898888766553 688999999999999876 6788999999999999999999988 888
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHh-----cCeEEcCCCCCCCC---CCceEEEEEecCChhHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNV-----AKVNVTPGSSCHCI---EPGWFSFSFTLLTEKDIHVVME 150 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~gi~v~pg~~f~~~---~~~~iRi~~~~~~~~~l~~~~~ 150 (163)
+..|+||||+|++++.. ++.++++.|+++ +||.+.||+.|+.. +++++||+++. +.++++++++
T Consensus 313 ~~~p~g~~~~~~~l~~~-------~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~~-~~~~~~~~~~ 384 (397)
T PRK07568 313 CEKPKGAFYIIAKLPVD-------DAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYVL-NEEDLKRAME 384 (397)
T ss_pred ecCCCcceEEEEecCCC-------CHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEeC-CHHHHHHHHH
Confidence 89999999999999852 567898888764 69999999999531 25799999986 7899999999
Q ss_pred HHHHHHHHhhh
Q 042816 151 RIRRISQTCKS 161 (163)
Q Consensus 151 ~l~~~~~~~~~ 161 (163)
+|.++++++.+
T Consensus 385 ~l~~~l~~~~~ 395 (397)
T PRK07568 385 ILKEALEKYNK 395 (397)
T ss_pred HHHHHHHHhhc
Confidence 99999988764
No 41
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=99.92 E-value=6.8e-24 Score=163.71 Aligned_cols=142 Identities=19% Similarity=0.320 Sum_probs=122.5
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+||+||+|+||+++ |+++++.+.+.... ++++.+.|.++...+.+ ++++++.++.|+++++.+.+.|+++ +.
T Consensus 246 ~~~~~GlRiG~~~~-~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~L~~~-~~ 319 (396)
T PRK09147 246 RSNVPGLRSGFVAG-DAALLKKFLLYRTYHGCAMPPAVQAASIAAWND----EAHVRENRALYREKFDAVTPILAPV-LD 319 (396)
T ss_pred ccCCccceeeeecC-CHHHHHHHHHHhhhcccCCCHHHHHHHHHHhcc----hhHHHHHHHHHHHHHHHHHHHHHHh-cC
Confidence 48999999999999 89999999877753 57888999988888865 4678999999999999999999886 77
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC------CCCceEEEEEecCChhHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC------IEPGWFSFSFTLLTEKDIHVVMERI 152 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~------~~~~~iRi~~~~~~~~~l~~~~~~l 152 (163)
+..|+||+|+|++++. ++.++++.|++++||.+.||+.|+. .+++++||+++. +++++++++++|
T Consensus 320 ~~~p~~g~f~~~~~~~--------~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~-~~~~l~~~l~rl 390 (396)
T PRK09147 320 VQLPDAGFYLWAKVPG--------DDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVA-PLAECVEAAERI 390 (396)
T ss_pred CCCCCeeEEEEEECCC--------CHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecC-CHHHHHHHHHHH
Confidence 7889999999999982 5688989888768999999998863 236899999998 889999999999
Q ss_pred HHHHH
Q 042816 153 RRISQ 157 (163)
Q Consensus 153 ~~~~~ 157 (163)
.++++
T Consensus 391 ~~~~~ 395 (396)
T PRK09147 391 VDFCR 395 (396)
T ss_pred HHHhc
Confidence 98764
No 42
>PRK07337 aminotransferase; Validated
Probab=99.92 E-value=6.7e-24 Score=163.33 Aligned_cols=151 Identities=19% Similarity=0.320 Sum_probs=125.2
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+||+||+|+||+++ ++++++.+.+.... .++|.+.|.++..++.++.+ .+.++.++.|+++++.+.+.|+++|+.
T Consensus 233 ~~~~~G~RiG~~~~-~~~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~L~~~~~~ 309 (388)
T PRK07337 233 YFNMTGWRLGWLVV-PEALVGTFEKLAQNLFICASALAQHAALACFEPDTL--AIYERRRAEFKRRRDFIVPALESLGFK 309 (388)
T ss_pred hcCCchhheeeeec-CHHHHHHHHHHHHHhccCCChHHHHHHHHHhccCch--HHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 47999999999999 89999999888763 47899999999999976542 445888999999999999999998876
Q ss_pred c-ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-CCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 79 C-AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI-EPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 79 ~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
+ ..|+||+|+|++++... +++..++.+++..+++++||.|.||+.|+.. +++|+||+++. +.+.+++++++|.+++
T Consensus 310 ~~~~p~~g~f~~~~~~~~~-~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~~-~~~~l~~~l~rl~~~l 387 (388)
T PRK07337 310 VPVMPDGAFYVYADCRGVA-HPAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYAT-SMSRLEEAVARLGKLF 387 (388)
T ss_pred cccCCCeeEEEEEeccccc-CCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEecC-CHHHHHHHHHHHHHHh
Confidence 5 47899999999997521 0111267889988877799999999999753 36899999998 8899999999998765
No 43
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=99.92 E-value=8.2e-24 Score=163.49 Aligned_cols=152 Identities=20% Similarity=0.281 Sum_probs=124.8
Q ss_pred CCCCCceeEEEEEecCH-----HHHHHHHHhhc-ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042816 1 DLSLPGFRISVIYSYNN-----SVLAAAKKLAR-FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ 74 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~-----~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (163)
+|++||+|+||++++++ ++++.+..... .+++|.+.|.++..+|.+.. ++++++.++.++++++.+.+.|+.
T Consensus 241 ~~~~~GlRiG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~--~~~l~~~~~~~~~~r~~l~~~L~~ 318 (401)
T TIGR01264 241 RWLVPGWRLGWIIIHDRRGILRDIRDGLVKLSQRILGPCTIVQGALPSILLRTP--QEYFDGTLSVLESNAMLCYGALAA 318 (401)
T ss_pred cCCCccceEEEEEecCcchhHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 48999999999999321 45666666554 46789999999999997631 688999999999999999999999
Q ss_pred c-CCccccCCceeEEEeecCCc-ccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHH
Q 042816 75 L-GIECAKSNGGFYCWADMSGL-ISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERI 152 (163)
Q Consensus 75 ~-g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l 152 (163)
+ |+++..|+||+|+|++++.. . ++..++.+++..|++++||.|.||+.|+. ++++||+++. +.+++++++++|
T Consensus 319 ~~~~~~~~p~~g~f~~~~~~~~~~--~~~~~~~~~~~~l~~~~gI~v~pg~~f~~--~~~iRis~~~-~~~~l~~~l~rl 393 (401)
T TIGR01264 319 VPGLRPVMPSGAMYMMVGIEMEHF--PEFKNDVEFTERLVAEQSVFCLPGSCFEY--PGFFRVVLTV-PVVMMEEACSRI 393 (401)
T ss_pred CCCCcccCCCeeeEEEEEeccccc--CCCCCHHHHHHHHHHhCCEEEeCchhcCC--CCeEEEEEcC-CHHHHHHHHHHH
Confidence 8 88888899999999998641 1 00115688998888669999999999964 6899999997 889999999999
Q ss_pred HHHHHHh
Q 042816 153 RRISQTC 159 (163)
Q Consensus 153 ~~~~~~~ 159 (163)
.++++++
T Consensus 394 ~~~~~~~ 400 (401)
T TIGR01264 394 QEFCERH 400 (401)
T ss_pred HHHHhcc
Confidence 9988754
No 44
>PRK07777 aminotransferase; Validated
Probab=99.92 E-value=6.5e-24 Score=163.34 Aligned_cols=148 Identities=20% Similarity=0.258 Sum_probs=126.6
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+||+||+|+||+++ ++++++.+.+... .++++.+.|.++..++.++ ++++++.++.++++++++.+.|++.|++
T Consensus 233 ~~g~~GlRiG~~~~-~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 308 (387)
T PRK07777 233 TFNVTGWKIGWACG-PAPLIAAVRAAKQYLTYVGGAPFQPAVAHALDHE---DAWVAALRDSLQAKRDRLAAGLAEAGFE 308 (387)
T ss_pred hccCcCceeEEEec-CHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 48999999999999 8999999988776 3567888999999988876 5788999999999999999999999999
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC---CCceEEEEEecCChhHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI---EPGWFSFSFTLLTEKDIHVVMERIRRI 155 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~---~~~~iRi~~~~~~~~~l~~~~~~l~~~ 155 (163)
+.+|+||||+|++++..- ..++.++++.|++++||.|.||+.|+.. .++++||+++. +++++++++++|.++
T Consensus 309 ~~~~~g~~~~~~~~~~~~----~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~~-~~~~l~~~l~~l~~~ 383 (387)
T PRK07777 309 VHDSAGTYFLCADPRPLG----YDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFCK-RDDTLDEAIRRLRAL 383 (387)
T ss_pred ccCCCcceEEEecccccC----CCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEecC-CHHHHHHHHHHHHHH
Confidence 999999999999986310 0267899999987789999999998632 25799999998 899999999999886
Q ss_pred HH
Q 042816 156 SQ 157 (163)
Q Consensus 156 ~~ 157 (163)
..
T Consensus 384 ~~ 385 (387)
T PRK07777 384 RG 385 (387)
T ss_pred hc
Confidence 53
No 45
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=99.92 E-value=1.1e-23 Score=167.42 Aligned_cols=156 Identities=17% Similarity=0.280 Sum_probs=121.7
Q ss_pred CCCCCceeEEEEEec-CHH----HHHHHHHhhcc-cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042816 1 DLSLPGFRISVIYSY-NNS----VLAAAKKLARF-SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ 74 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~-~~~----~~~~~~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (163)
+|++||+|+||++++ +++ +++.+...... .+++.++|.++..+|.+...+++++...++.+ ++++++.+.|++
T Consensus 354 ~~~~~G~RiG~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~~-~~r~~l~~~L~~ 432 (517)
T PRK13355 354 SHMIAGYRIGWMILSGNKRIAKDYIEGLNMLANMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGRVY-EQRELVYNALNA 432 (517)
T ss_pred hccCcccceEEEEeeCchhhHHHHHHHHHHHhcCcCCcChHHHHHHHHHhcCCccHHHHHHHHHHHH-HHHHHHHHHHhc
Confidence 479999999999962 454 44445443333 57889999999999976432366777665555 557999999999
Q ss_pred c-CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHH
Q 042816 75 L-GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIR 153 (163)
Q Consensus 75 ~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~ 153 (163)
+ |+++.+|+|+||+|++++... .+..++.+++..+++++||.|.||+.|+...++|+||+++. +.+++++++++|.
T Consensus 433 ~~g~~~~~p~g~fy~~~~l~~~~--~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~~~-~~~~l~~a~~rl~ 509 (517)
T PRK13355 433 IPGISAVKPKAAFYIFPKIDVKK--FNIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVYLP-RLEDLEDAMDRLA 509 (517)
T ss_pred CCCcccCCCCeeeEEEeecCccc--CCCCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEeCC-CHHHHHHHHHHHH
Confidence 8 999999999999999987421 01124667877777779999999999986568999999986 9999999999999
Q ss_pred HHHHHhh
Q 042816 154 RISQTCK 160 (163)
Q Consensus 154 ~~~~~~~ 160 (163)
+++++++
T Consensus 510 ~~~~~~~ 516 (517)
T PRK13355 510 DFFSYYR 516 (517)
T ss_pred HHHHHhh
Confidence 9998654
No 46
>PLN02187 rooty/superroot1
Probab=99.92 E-value=1.2e-23 Score=165.01 Aligned_cols=156 Identities=13% Similarity=0.212 Sum_probs=123.4
Q ss_pred CCCCCceeEEEEEecCHH----HHHHHHHhhccc----CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042816 1 DLSLPGFRISVIYSYNNS----VLAAAKKLARFS----SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGL 72 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~----~~~~~~~~~~~~----~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 72 (163)
+|++||+|+||+++++++ +++.+......+ +++.+.|.++..+|++.. ++|+++.++.++++++++.+.|
T Consensus 277 ~f~~pGlRiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~--~~~l~~~~~~l~~~r~~l~~~L 354 (462)
T PLN02187 277 GWVVPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKAD--KNFFAKKNKILKHNVDLVCDRL 354 (462)
T ss_pred hcCCccceeEEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999984343 345666665532 458899999999998632 5889999999999999999999
Q ss_pred hhcC-Cc-cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHH
Q 042816 73 RQLG-IE-CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVME 150 (163)
Q Consensus 73 ~~~g-~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~ 150 (163)
++++ .. +..|+||+|+|++++.... .+..++.+++..+++++||.|.||+.|+. ++|+||+++. +++.++++++
T Consensus 355 ~~~~~~~~~~~P~gg~fl~~~l~~~~~-~~~~~~~~~~~~ll~~~gV~v~pG~~fg~--~~~iRis~~~-~~e~l~~al~ 430 (462)
T PLN02187 355 KDIPCVVCPKKPESCTYLLTKLELSLM-DNIKDDIDFCVKLAREENLVFLPGDALGL--KNWMRITIGV-EAHMLEDALE 430 (462)
T ss_pred hhCCCCcCCCCCCEeEEEEeecChhhC-CCCCCHHHHHHHHHhhCCEEEECccccCC--CCeEEEEeCC-CHHHHHHHHH
Confidence 9884 33 4578999999998863210 01114567877787779999999999974 7899999998 8899999999
Q ss_pred HHHHHHHHhhhc
Q 042816 151 RIRRISQTCKSH 162 (163)
Q Consensus 151 ~l~~~~~~~~~~ 162 (163)
+|.++++++.++
T Consensus 431 rL~~~l~~~~~~ 442 (462)
T PLN02187 431 RLKGFCTRHAKK 442 (462)
T ss_pred HHHHHHHHhhhc
Confidence 999999887653
No 47
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=99.92 E-value=1.3e-23 Score=160.56 Aligned_cols=138 Identities=22% Similarity=0.335 Sum_probs=120.2
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
.||+||+|+||+++ |+++++.+.+... .++++.+.|.++..+|.+. +++++.++.|+++++.+.+.|++.|+.
T Consensus 224 ~~~~~GlRiG~i~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~g~~ 298 (364)
T PRK07865 224 QSNLAGYRAGFVAG-DPALVAELLEVRKHAGMMVPAPVQAAMVAALGDD----AHVREQRERYARRRAVLRPALEAAGFR 298 (364)
T ss_pred ccCCCceeeEEEec-CHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 37899999999999 9999999988765 3678999999999999874 667889999999999999999999999
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIR 153 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~ 153 (163)
+..|+||+|+|++++. ++.++++.|.+ +||.|.||..|+...++++||+++. +++++++++++|.
T Consensus 299 ~~~~~~~~~~~~~~~~--------~~~~~~~~l~~-~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~~~~~~~~l~ 363 (364)
T PRK07865 299 VDHSEAGLYLWATRGE--------DCWDTVAWLAE-RGILVAPGDFYGPAGAQHVRVALTA-TDERIAAAVERLA 363 (364)
T ss_pred ccCCCccEEEEEeCCC--------CHHHHHHHHHH-CCEEEeCccccCcCCCCEEEEEecC-CHHHHHHHHHHhh
Confidence 9999999999999853 45677777765 8999999998875557899999987 7899999999885
No 48
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=99.92 E-value=1.6e-23 Score=162.03 Aligned_cols=153 Identities=22% Similarity=0.371 Sum_probs=125.1
Q ss_pred CCCCCceeEEEEEecCH------HHHHHHHHhhc-ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042816 1 DLSLPGFRISVIYSYNN------SVLAAAKKLAR-FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLR 73 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~------~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 73 (163)
+|++||+|+||++++++ ++++.+..... .+++|.+.|.++..+|.+.. +.++++.++.++++++.+.+.|+
T Consensus 242 ~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~ 319 (403)
T TIGR01265 242 RWVVPGWRLGWIIIHDPHGIFRDTVLQGLKNLLQRILGPATIVQGALPDILENTP--QEFFDGKISVLKSNAELCYEELK 319 (403)
T ss_pred ccCCCcceEEEEEEeCchhhhHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHHHHHHHHh
Confidence 37999999999998433 24555555544 36789999999999997642 68899999999999999999999
Q ss_pred hc-CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHH
Q 042816 74 QL-GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERI 152 (163)
Q Consensus 74 ~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l 152 (163)
.+ |+++..|+||+|+|++++.... .+..++.+++..+++++||.|.||+.|+. ++|+||+++. +.+++++++++|
T Consensus 320 ~~~~~~~~~p~~g~f~~~~~~~~~~-~~~~~~~~~~~~l~~~~gv~v~pg~~f~~--~~~iRis~~~-~~~~l~~~l~~l 395 (403)
T TIGR01265 320 DIPGLVCPKPEGAMYLMVKLELELF-PEIKDDVDFCEKLVREESVICLPGSAFGL--PNWVRITITV-PESMLEEACSRI 395 (403)
T ss_pred cCCCceecCCCceeEEEEecccccc-CCCCCHHHHHHHHHHhCCEEEeCccccCC--CCeEEEEecC-CHHHHHHHHHHH
Confidence 88 8888889999999999975310 00115678988887779999999999974 7899999997 889999999999
Q ss_pred HHHHHHh
Q 042816 153 RRISQTC 159 (163)
Q Consensus 153 ~~~~~~~ 159 (163)
.++++++
T Consensus 396 ~~~~~~~ 402 (403)
T TIGR01265 396 KEFCERH 402 (403)
T ss_pred HHHHHhc
Confidence 9998765
No 49
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.92 E-value=1.4e-23 Score=161.81 Aligned_cols=140 Identities=21% Similarity=0.373 Sum_probs=120.7
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+|++||+|+||+++ |+++++.+.+.... ++++.+.|.++...+.+ ++++++.++.|+++++.+.+.|+++ +.
T Consensus 245 ~~~~~GlRvG~~i~-~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~L~~~-~~ 318 (393)
T TIGR03538 245 RSNLPGLRSGFVAG-DAEILKAFLRYRTYHGCAMPIPTQLASIAAWND----EQHVRENRALYREKFAAVLEILGQV-LD 318 (393)
T ss_pred hcCCcccceEEEec-CHHHHHHHHHHHHhhccCcCHHHHHHHHHHhcC----hHHHHHHHHHHHHHHHHHHHHHHhh-Cc
Confidence 38999999999999 89999999888763 57889999998888865 4778999999999999999999886 56
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC------CCCceEEEEEecCChhHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC------IEPGWFSFSFTLLTEKDIHVVMERI 152 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~------~~~~~iRi~~~~~~~~~l~~~~~~l 152 (163)
+..|+||+|+|++++. ++.++++.|++++||.|.||+.|+. .+.+++||+++. +++++++++++|
T Consensus 319 ~~~p~gg~f~~~~~~~--------~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~-~~~~l~~~l~~l 389 (393)
T TIGR03538 319 LELPDAGFYLWPKVPG--------DDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVA-PLEECVEAAERI 389 (393)
T ss_pred ccCCCeeEEEEEECCC--------CHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecC-CHHHHHHHHHHH
Confidence 6789999999999982 5678999888778999999999862 236799999997 889999999999
Q ss_pred HHH
Q 042816 153 RRI 155 (163)
Q Consensus 153 ~~~ 155 (163)
.++
T Consensus 390 ~~~ 392 (393)
T TIGR03538 390 RSF 392 (393)
T ss_pred HHh
Confidence 874
No 50
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=99.92 E-value=2.9e-23 Score=160.84 Aligned_cols=157 Identities=15% Similarity=0.271 Sum_probs=120.9
Q ss_pred CCCCCceeEEEEEec-CHHH------HHHHHHhhcc-cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042816 1 DLSLPGFRISVIYSY-NNSV------LAAAKKLARF-SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGL 72 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~-~~~~------~~~~~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 72 (163)
+|++||+|+||++++ ++.+ ++.+.+.... ..++.+.|.++..+|+++. +.++++.++.++++++.+.+.|
T Consensus 243 ~f~~pGlRvG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~L 320 (409)
T PLN00143 243 RWMIPGWGLGWLVTCDPSGLLQICEIADSIKKALNPAPFPPTFIQAAIPEILEKTT--EDFFSKTINILRAALAFCYDKL 320 (409)
T ss_pred hcCCCccceEEEEeeCchhhhhhHHHHHHHHHHHhccCCCCchHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999994 3333 3444444332 3458899999999998632 4677888888888999999999
Q ss_pred hhcC-Cc-cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHH
Q 042816 73 RQLG-IE-CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVME 150 (163)
Q Consensus 73 ~~~g-~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~ 150 (163)
++++ .. +..|+||+|+|++++.... .+..++.+++..+++++||.+.||+.|+. ++|+||+++. +.++++++++
T Consensus 321 ~~~~~~~~~~~p~gg~f~w~~l~~~~~-~~~~~~~~~~~~ll~~~gV~v~pg~~f~~--~~~iRi~~~~-~~~~l~~al~ 396 (409)
T PLN00143 321 KEIPCIMCPQKAEGAFFALVKLNLLLL-EDIEDDMEFCLKLAKEESLIILPGVTVGL--KNWLRITFAV-EQSSLEDGLG 396 (409)
T ss_pred hcCCCCCCCCCCCeeEEEEEecchhhc-CCCCCHHHHHHHHHHhCCEEEeCccccCC--CCeEEEEEcC-CHHHHHHHHH
Confidence 8873 33 3578999999999974210 01114677887777779999999999964 7899999997 8899999999
Q ss_pred HHHHHHHHhhhcC
Q 042816 151 RIRRISQTCKSHS 163 (163)
Q Consensus 151 ~l~~~~~~~~~~~ 163 (163)
+|.++++++.+++
T Consensus 397 rl~~~l~~~~~~~ 409 (409)
T PLN00143 397 RLKSFCGRHAKKP 409 (409)
T ss_pred HHHHHHHHhccCC
Confidence 9999999887653
No 51
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.91 E-value=4.7e-23 Score=157.09 Aligned_cols=136 Identities=21% Similarity=0.352 Sum_probs=119.0
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIEC 79 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 79 (163)
||+||+|+||+++ |+++++.+.+.... ++++.+.|.++..+|++. .++++.++.|+++++.+.+.|++.|+++
T Consensus 219 ~~~~G~R~G~~i~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~L~~~g~~~ 293 (357)
T TIGR03539 219 SNLAGYRAGFVAG-DPALVAELLTVRKHAGLMVPAPVQAAMVAALGDD----GHVAEQKARYAARRAQLKPALEKAGFRI 293 (357)
T ss_pred cCCCceeEEEEec-CHHHHHHHHHHHhhcccCCCHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 7899999999999 89999999877653 678999999999999874 6678889999999999999999999999
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERI 152 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l 152 (163)
.+|+||+|+|++++. ++.++++.|.+ +||.|.||..|+...++++||+++. +.+++++++++|
T Consensus 294 ~~p~~~~~~~~~~~~--------~~~~~~~~l~~-~gV~v~pg~~f~~~~~~~iRis~~~-~~~~i~~~~~~l 356 (357)
T TIGR03539 294 DHSEAGLYLWATRGE--------DAWDTVDRLAE-LGILVAPGDFYGPAGSQHVRVALTA-TDERIAAAVARL 356 (357)
T ss_pred cCCCccEEEEEECCC--------CHHHHHHHHHh-CCEEECCccccCCCCCCeEEEEecC-CHHHHHHHHHhh
Confidence 999999999999864 55778887765 8999999998875557899999998 889999999876
No 52
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=99.91 E-value=2.4e-23 Score=158.33 Aligned_cols=141 Identities=18% Similarity=0.278 Sum_probs=121.3
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhccc--CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFS--SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+||+||+|+||+++ ++++++.+......+ +++.+.|.++...+.+. +++++.++.++++++.+.+.|+..|++
T Consensus 207 ~~g~~GlRiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----~~~~~~r~~l~~~~~~~~~~l~~~g~~ 281 (350)
T TIGR03537 207 RSGMTGYRSGFVAG-DEKLISFLRKLRANFGVASPDFVQAAAKAAWSDD----NHVLERRKIFKRKRDLFIEFFNKVGLE 281 (350)
T ss_pred ccCCccccceeeec-CHHHHHHHHHHHHhhccCCCHHHHHHHHHHhCCc----HHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 47999999999999 999999998877643 45557888887777763 567888999999999999999999999
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~ 154 (163)
+.+|+||+|+|+++|... ++.++++.|++ +||.|.||+.|+...++++||+++. +++++++++++|++
T Consensus 282 ~~~~~g~~~~~~~~~~~~------~~~~l~~~L~~-~gv~v~~g~~f~~~~~~~~Ri~~~~-~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 282 YLYPDATFYLWVKVPSGI------DAKDYALRLLE-NGIVVAPGENFGSGEEGYVRVALVP-TLEECEEALRLWER 349 (350)
T ss_pred ccCCCeEEEEEEECCCCC------CHHHHHHHHHH-CCEEEcCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHhc
Confidence 999999999999998643 67899999987 8999999999975557899999985 88999999999875
No 53
>PRK08363 alanine aminotransferase; Validated
Probab=99.91 E-value=4.6e-23 Score=159.21 Aligned_cols=151 Identities=19% Similarity=0.249 Sum_probs=124.3
Q ss_pred CCCCCceeEEEEEe-cCHHHHHHHHHhhc-----ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042816 1 DLSLPGFRISVIYS-YNNSVLAAAKKLAR-----FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ 74 (163)
Q Consensus 1 ~~~~~G~RiG~~i~-~~~~~~~~~~~~~~-----~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (163)
.|++||+|+||+++ .++++++.+.+... .+++|.+.|.++..+|.+. ++++++.++.++++++.+.+.|++
T Consensus 238 ~~~~~GlRiG~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~l~~~~~~~~~~~~~l~~~L~~ 314 (398)
T PRK08363 238 VYFATGWRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGP---MDYLEEYMKKLKERRDYIYKRLNE 314 (398)
T ss_pred ccCCccceEEEEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHhc
Confidence 37999999999997 36667666654432 2578999999999999764 688899999999999999999998
Q ss_pred c-CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHH
Q 042816 75 L-GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIR 153 (163)
Q Consensus 75 ~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~ 153 (163)
+ |+++.+|+||||+|++++... ..++.+++..+++++||.|.||+.|+..+++|+||+++. +.+++++++++|.
T Consensus 315 ~~~~~~~~p~g~~~~~~~l~~~~----~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~ 389 (398)
T PRK08363 315 IPGISTTKPQGAFYIFPRIEEGP----WKDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFLP-PVEILEEAMDRFE 389 (398)
T ss_pred CCCCEecCCCeEEEEEEEeccCC----CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHH
Confidence 8 888889999999999987520 014567776776779999999999976557899999986 8899999999999
Q ss_pred HHHHHh
Q 042816 154 RISQTC 159 (163)
Q Consensus 154 ~~~~~~ 159 (163)
+++.+.
T Consensus 390 ~~~~~~ 395 (398)
T PRK08363 390 EFMRER 395 (398)
T ss_pred HHHHHh
Confidence 988653
No 54
>PRK05839 hypothetical protein; Provisional
Probab=99.91 E-value=4.4e-23 Score=158.15 Aligned_cols=137 Identities=20% Similarity=0.283 Sum_probs=116.7
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+||+||+|+||+++ ++++++.+.+.... ++++.+.|.++..++.+ ++++++.++.++++++++.+.| ++.
T Consensus 233 ~~~~~GlRiG~ii~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~l---~~~ 304 (374)
T PRK05839 233 RSSAPGLRSGFIAG-DASILKKYKAYRTYLGCASPLPLQKAAAVAWLD----DEHAEFFRNIYAKNLKLAREIL---GIT 304 (374)
T ss_pred ccCCccceeEEEec-CHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcc----chHHHHHHHHHHHHHHHHHHhc---CCC
Confidence 48999999999999 89999999888653 57888999999888876 4677889999999999988866 333
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC--CCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI--EPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~--~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
.|+||+|+|++++ ++.++++.|++++||.|.||+.|+.. +++|+|||++. +.+++++++++|.+++
T Consensus 305 --~p~gg~fi~~~~~---------~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~~-~~~~~~~~l~~l~~~l 372 (374)
T PRK05839 305 --IPPATFYVWLPVD---------NDEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALVY-DTPKLEKALEIIKTYL 372 (374)
T ss_pred --CCCeeEEEEEeCC---------ChHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEecC-CHHHHHHHHHHHHHHh
Confidence 7899999999997 34788998887699999999988753 36899999987 8899999999999887
Q ss_pred H
Q 042816 157 Q 157 (163)
Q Consensus 157 ~ 157 (163)
+
T Consensus 373 ~ 373 (374)
T PRK05839 373 E 373 (374)
T ss_pred h
Confidence 4
No 55
>PRK05764 aspartate aminotransferase; Provisional
Probab=99.91 E-value=8.3e-23 Score=157.42 Aligned_cols=152 Identities=27% Similarity=0.460 Sum_probs=130.4
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CC
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GI 77 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 77 (163)
.||+||+|+||+++ ++++++.+..... ..+++.+.|.++..++++. ++++++.++.+.++++.+.+.|+++ |+
T Consensus 239 ~~~~~G~RiG~i~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~g~ 314 (393)
T PRK05764 239 AYAMTGWRLGYAAG-PKELIKAMSKLQSHSTSNPTSIAQYAAVAALNGP---QDEVEEMRQAFEERRDLMVDGLNEIPGL 314 (393)
T ss_pred cccCccceeEEEec-CHHHHHHHHHHHhhcccCCChHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 47899999999999 9999999988776 3578999999999999742 5788899999999999999999999 99
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
++.+|+||+|+|++++......+. ++.++++.+++++||.+.||..|+. ++++||+++. +.+++++++++|.+++.
T Consensus 315 ~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~f~~--~~~vRis~~~-~~~~~~~~i~~l~~~~~ 390 (393)
T PRK05764 315 ECPKPEGAFYVFPNVSKLLGKSIT-DSLEFAEALLEEAGVAVVPGIAFGA--PGYVRLSYAT-SLEDLEEGLERIERFLE 390 (393)
T ss_pred cccCCCcceEEEEecccccccccC-CHHHHHHHHHHhCCEEEccccccCC--CCEEEEEecC-CHHHHHHHHHHHHHHHH
Confidence 999999999999999864311111 3588888888778999999999975 7899999997 89999999999999988
Q ss_pred Hhh
Q 042816 158 TCK 160 (163)
Q Consensus 158 ~~~ 160 (163)
+++
T Consensus 391 ~~~ 393 (393)
T PRK05764 391 SLK 393 (393)
T ss_pred hhC
Confidence 654
No 56
>PRK09275 aspartate aminotransferase; Provisional
Probab=99.91 E-value=1.2e-23 Score=165.80 Aligned_cols=155 Identities=20% Similarity=0.300 Sum_probs=120.5
Q ss_pred CCCCCceeEEEEEecCHH-----HHHHH--------------------------------HHhhcc--cCCChHHHHH--
Q 042816 1 DLSLPGFRISVIYSYNNS-----VLAAA--------------------------------KKLARF--SSVSAPSQNL-- 39 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~-----~~~~~--------------------------------~~~~~~--~~~s~~~q~~-- 39 (163)
+|||||||+||+++ +++ +++.+ +++..+ .++|++.|.+
T Consensus 312 ~f~mtG~RlG~i~~-~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~a 390 (527)
T PRK09275 312 YFGATGWRLGVIAL-HEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMA 390 (527)
T ss_pred hccCcHhHHhhhhc-CchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHH
Confidence 58999999999999 554 33222 344442 5788999986
Q ss_pred ---HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCceeEEEeecCCccc---CC-------ChhhHHH
Q 042816 40 ---LVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLIS---SY-------SEKGELE 106 (163)
Q Consensus 40 ---~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~~---~~-------~~~~~~~ 106 (163)
+..+++.+ +.+.+.+++.|++|++.+.+.|. .++...+|+|+||+|++++.... +. ...++.+
T Consensus 391 l~~~~all~~~---~~~~~~~~~~~~~Rr~~l~~~Lg-~~~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~ 466 (527)
T PRK09275 391 LFSLFALLDEE---DAYKKAMKDIIRRRYKALYEGLG-LPEPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPVD 466 (527)
T ss_pred HHHHHHHHhCc---hHHHHHHHHHHHHHHHHHHHHcC-CCCcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhccCCHHH
Confidence 33556655 67889999999999999999883 24444689999999999976421 00 0125789
Q ss_pred HHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHhhh
Q 042816 107 LWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 107 ~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
|+.+|++++||.+.||+.|+. +++++|||++..+++++.++.++|.+++.++..
T Consensus 467 f~~~Ll~e~gV~v~PG~~Fg~-~~~~vRis~a~~~~~~~~~~~~rl~~~l~~y~~ 520 (527)
T PRK09275 467 LLFRLAEETGVVLLPGGGFGG-PEWSVRVSLANLNEEDYAKIGKAIRKLLDEYYE 520 (527)
T ss_pred HHHHHHhcCCEEEeCchhhCC-CCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999985 368999999976889999999999999987754
No 57
>PLN02231 alanine transaminase
Probab=99.91 E-value=9.4e-23 Score=162.04 Aligned_cols=156 Identities=19% Similarity=0.233 Sum_probs=122.5
Q ss_pred CCCCceeEEEEEec--CHHHHHHHHHhhcc-cCCChHHHHHHHHhcCCh-----HHHHH---HHHHHHHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSY--NNSVLAAAKKLARF-SSVSAPSQNLLVSMLSDT-----KFVQK---FININRERLRRLYVKFVA 70 (163)
Q Consensus 2 ~~~~G~RiG~~i~~--~~~~~~~~~~~~~~-~~~s~~~q~~~~~~l~~~-----~~~~~---~~~~~~~~~~~~~~~l~~ 70 (163)
+|+||+|+||++++ |+++++.+.+.... .+++.+.|.++..+++.+ .+ +. +.+.+++.|++|++++.+
T Consensus 354 ~g~pGlRiGy~~~~~~~~~l~~~l~k~~~~~~~s~~~~Q~~~~~~l~~p~~~~~~y-~~~~~~~~~i~~~~~~r~~~l~~ 432 (534)
T PLN02231 354 YGECGKRGGYMEVTGFTSDVREQIYKVASVNLCSNISGQILASLVMSPPKPGDESY-ESYMAEKDGILSSLARRAKTLED 432 (534)
T ss_pred ccCCccceEEEEEecCCHHHHHHHHHHHhhhcCCChHHHHHHHHHhCCCCCCcchH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999873 68999999877663 567788899999888752 33 44 345678999999999999
Q ss_pred Hhhhc-CCccccCCceeEEEeec--CCc-ccC---CChhhHHHHHHHHHHhcCeEEcCCCCCCCC-CCceEEEEEecCCh
Q 042816 71 GLRQL-GIECAKSNGGFYCWADM--SGL-ISS---YSEKGELELWDKLLNVAKVNVTPGSSCHCI-EPGWFSFSFTLLTE 142 (163)
Q Consensus 71 ~l~~~-g~~~~~~~~g~~~~~~~--~~~-~~~---~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-~~~~iRi~~~~~~~ 142 (163)
.|+++ |+++.+|+||||+|+++ |.. +.. .+..++..++..|++++||.+.||+.|+.. +..++|+++.. ++
T Consensus 433 ~L~~~~gi~~~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit~~~-~~ 511 (534)
T PLN02231 433 ALNSLEGVTCNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCTILP-QE 511 (534)
T ss_pred HHhcCCCceecCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEEEEeCC-CH
Confidence 99998 99999999999999665 421 000 001134567788888789999999999853 35689999986 89
Q ss_pred hHHHHHHHHHHHHHHHh
Q 042816 143 KDIHVVMERIRRISQTC 159 (163)
Q Consensus 143 ~~l~~~~~~l~~~~~~~ 159 (163)
+++++++++|.+++++.
T Consensus 512 e~l~eal~RL~~~~~~~ 528 (534)
T PLN02231 512 DKIPAIVSRLTEFHKSF 528 (534)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987654
No 58
>PRK07550 hypothetical protein; Provisional
Probab=99.90 E-value=1.6e-22 Score=155.64 Aligned_cols=144 Identities=19% Similarity=0.242 Sum_probs=124.5
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CC
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GI 77 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 77 (163)
+||+||+|+||+++ ++++++.+.+.... .++|.+.|.++..++++. ++++++.++.++++++.+.+.|+.+ ++
T Consensus 237 ~~g~~G~RiG~i~~-~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 312 (386)
T PRK07550 237 SYALTGHRVGAVVA-SPARIAEIEKFMDTVAICAPRIGQIAVAWGLPNL---ADWRAGNRAEIARRRDAFRAVFARLPGW 312 (386)
T ss_pred hccCcccceEeeec-CHHHHHHHHHHHhhcccCCCcHHHHHHHHHhccH---HHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 47899999999999 89999999887763 567999999999999873 7888999999999999999999987 66
Q ss_pred ccccCCceeEEEeecCC-cccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSG-LISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~ 155 (163)
.+. +.||+|+|++++. .. ++.++++.|++++||.|.||..|+...++++||+++..+++++++++++|.++
T Consensus 313 ~~~-~~g~~~~~~~~~~~~~------~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 313 ELL-ASGAYFAYVRHPFPDR------PSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFANADVAGIGELVERLRAF 384 (386)
T ss_pred eeC-CCceEEEEecCCCCCC------CHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeecCCHHHHHHHHHHHHhh
Confidence 554 6799999999985 43 78899999887789999999999755578999999976888999999999864
No 59
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=99.90 E-value=1.8e-22 Score=154.04 Aligned_cols=137 Identities=18% Similarity=0.232 Sum_probs=112.6
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIEC 79 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~ 79 (163)
+||+||+|+||+++ ++++++.+.+....+++|.+.|.++..+|+++ .+.+..++.++++++.+.+.|+++ |+.+
T Consensus 217 ~~~l~GlRiG~~v~-~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~----~~~~~~~~~~~~~r~~l~~~L~~~~~~~~ 291 (360)
T PRK07392 217 FYSLPGLRLGYAIA-HPDRLQRWQQWRDPWPVNGLAAAAAIAALADR----DFQQQTWAWLPPAREALFQGLASLPGLTP 291 (360)
T ss_pred hhcCCchheeeeeC-CHHHHHHHHhhCCCCCCCHHHHHHHHHHhccH----HHHHHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence 48999999999999 89999999877766889999999999999986 345666778999999999999987 7777
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCCh--hHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTE--KDIHVVMERI 152 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~--~~l~~~~~~l 152 (163)
. +.+|+|+|++++. ++.++++.+++++||.|.||+.|+..+++|+||+++. +. +++.++++++
T Consensus 292 ~-~~~~~fl~~~~~~--------~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~~~l~~al~~~ 356 (360)
T PRK07392 292 L-PSAANFLLVQSQG--------SALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVRT-EAENQRLLEALAAI 356 (360)
T ss_pred C-CCCCCEEEEEcCC--------CHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeCC-HHHHHHHHHHHHHH
Confidence 5 4789999999874 5688998887768999999999975557899999996 32 3455555443
No 60
>PRK09265 aminotransferase AlaT; Validated
Probab=99.90 E-value=3.2e-22 Score=154.81 Aligned_cols=156 Identities=19% Similarity=0.277 Sum_probs=117.5
Q ss_pred CCCCCceeEEEEEec-CHH----HHHHHHHhhc-ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042816 1 DLSLPGFRISVIYSY-NNS----VLAAAKKLAR-FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ 74 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~-~~~----~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (163)
+||+||+|+||++++ +++ +++.+..... .+++|.+.|.++..+|.+.+.++.+++. ++.++++++.+.+.|++
T Consensus 241 ~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~-~~~~~~~r~~~~~~L~~ 319 (404)
T PRK09265 241 AYRVAGFRVGWMVLSGPKKHAKGYIEGLDMLASMRLCANVPAQHAIQTALGGYQSINELILP-GGRLYEQRDRAWELLNA 319 (404)
T ss_pred hccCcccceEEEEEeCchHHHHHHHHHHHHHhccccCCCcHHHHHHHHHhcCchhHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 478999999999972 444 4444443322 3678999999999999765432334333 35677889999999998
Q ss_pred c-CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHH
Q 042816 75 L-GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIR 153 (163)
Q Consensus 75 ~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~ 153 (163)
+ |+++.+|+||+|+|++++.... +..++.++...+++++||.|.||+.|+...++++|++++. +.+++++++++|.
T Consensus 320 ~~~~~~~~p~~g~~l~~~~~~~~~--~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~~~-~~e~l~~~l~rl~ 396 (404)
T PRK09265 320 IPGVSCVKPKGALYAFPKLDPKVY--PIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVTLP-RVDDLEEAIGRIG 396 (404)
T ss_pred CCCCcccCCCcceEEEEEeccccc--CCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEeCC-CHHHHHHHHHHHH
Confidence 8 8999999999999999975310 0013445555555669999999999975557899999986 8899999999999
Q ss_pred HHHHHhh
Q 042816 154 RISQTCK 160 (163)
Q Consensus 154 ~~~~~~~ 160 (163)
+++++++
T Consensus 397 ~~l~~~~ 403 (404)
T PRK09265 397 RFLSGYR 403 (404)
T ss_pred HHHHHhc
Confidence 9988654
No 61
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=99.90 E-value=3.2e-23 Score=158.03 Aligned_cols=142 Identities=28% Similarity=0.489 Sum_probs=128.1
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
.||+||+|+||+++ ++++++.+.+....+..+++.|.++..++.+.....+++++.++.++++++.+.+.|++.|+.+.
T Consensus 222 ~~g~~GlRvG~i~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~ 300 (363)
T PF00155_consen 222 SFGLPGLRVGYIVA-PPELIERLRRFQRSGLSSSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEIGITVL 300 (363)
T ss_dssp TTTSGGGTEEEEEE-EHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEE
T ss_pred cccccccccccccc-hhhhhhhhhhccccccccchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHhhhhee
Confidence 48999999999999 99999999999887666999999999999987644569999999999999999999999999999
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERI 152 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l 152 (163)
++++|+|+|++++.. ++.++++.|+++.||.+.||..|+. ++++||+++..+++++++++++|
T Consensus 301 ~~~~~~~~~~~~~~~-------~~~~l~~~L~~~~gi~v~pg~~~~~--~~~iRi~~a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 301 PPEAGFFLWVRLDPN-------DAEELAQELLEEYGILVRPGSYFGV--PGYIRISLASHSEEDLEEALERL 363 (363)
T ss_dssp HHSBSSEEEEEESHH-------HHHHHHHHHHHHHTEEEEEGGGGTS--TTEEEEEGGCSCHHHHHHHHHHH
T ss_pred eccCccEEEEEcccc-------hHHHHHHHHHHhCCEEEEecCCCCC--CCEEEEEeccCCHHHHHHHHhhC
Confidence 999999999999862 6789999999866999999999987 88999999556999999999886
No 62
>PLN02672 methionine S-methyltransferase
Probab=99.90 E-value=1.3e-22 Score=169.23 Aligned_cols=153 Identities=15% Similarity=0.255 Sum_probs=121.6
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSML-----SDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
.|++||+|+||++++++++++.+.+......+..+.|.++..++ +++.| .+++++.++.|+++++++.+.|+++
T Consensus 911 kf~lpGLRIGylIap~~eLi~~l~~~~~~s~~~~~~q~Aaaaalall~~~~~~~-~~~l~e~r~~Lk~rRd~L~e~L~~~ 989 (1082)
T PLN02672 911 ELLSGGHEFGFLALNDSVLIDAFHSAPGLSRPHSTLKYTIKKLLGLKNQKSSDL-LDGVAEQKKILKSRAERLKETLEAC 989 (1082)
T ss_pred hhccHHHHheeEEeCCHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHhccCcHH-HHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 37899999999999556699999887554444445555444433 24555 6788999999999999999999999
Q ss_pred CCccccCCceeEEEeecCCccc------CC----C-hhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhH
Q 042816 76 GIECAKSNGGFYCWADMSGLIS------SY----S-EKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKD 144 (163)
Q Consensus 76 g~~~~~~~~g~~~~~~~~~~~~------~~----~-~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~ 144 (163)
|+++.+|+||||+|++++...+ .. . ..++.++++.|+++.||.|.||+.|+. ++|+||+++. +.++
T Consensus 990 Gi~v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~--~g~~RIsfa~-~~e~ 1066 (1082)
T PLN02672 990 GWDVLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGI--PGYCRFSFAL-EDSE 1066 (1082)
T ss_pred CCeEecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCC--CCeEEEEecC-CHHH
Confidence 9999999999999998754321 00 0 126789999999877999999988874 7899999997 8899
Q ss_pred HHHHHHHHHHHHH
Q 042816 145 IHVVMERIRRISQ 157 (163)
Q Consensus 145 l~~~~~~l~~~~~ 157 (163)
+++++++|.++.+
T Consensus 1067 LeeALerL~kf~~ 1079 (1082)
T PLN02672 1067 FDRALKAIARFKE 1079 (1082)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998654
No 63
>PRK08637 hypothetical protein; Provisional
Probab=99.90 E-value=2.8e-22 Score=154.41 Aligned_cols=146 Identities=21% Similarity=0.231 Sum_probs=122.5
Q ss_pred CCCCCceeEEEEEec-----CHHHHHHHHHhh------cccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVIYSY-----NNSVLAAAKKLA------RFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFV 69 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~-----~~~~~~~~~~~~------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 69 (163)
+|++||+|+||++++ |+++++.+.+.. ..+++|.+.|.++..+|+++.+ .+++++.+..++++++.+.
T Consensus 228 ~~~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~-~~~~~~~~~~~~~r~~~~~ 306 (388)
T PRK08637 228 EEFVWGFRVGFITFGTKAGSSQTVKEALEKKVKGLIRSNISNGPHPSQSAVLRALNSPEF-DKEKQEKFQILKERYEKTK 306 (388)
T ss_pred cCCCcccceEEEEEccccCCcHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHHHHH
Confidence 479999999999973 368888876421 1357899999999999998876 7888899999999999999
Q ss_pred HHhhhc----CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHH
Q 042816 70 AGLRQL----GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDI 145 (163)
Q Consensus 70 ~~l~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l 145 (163)
+.|+.. ++++.+|+||||+|++++. .++.++++.|++++||.+.+. +++++||+++..+.+++
T Consensus 307 ~~l~~~~~~~~~~~~~~~~g~~~~~~l~~-------~~~~~l~~~l~~~~gv~~~~~------~~~~iRi~~~~~~~~~i 373 (388)
T PRK08637 307 EVLYDGKYDDAWQAYPFNSGYFMCLKLKG-------VDAEELRVHLLEKYGIGTIAL------NETDLRIAFSCVEEEDI 373 (388)
T ss_pred HHHHhhCCCCCcccccccceEEEEecCCh-------HHHHHHHHHHhhhcceEEEec------cCCceEEEeecCCHHHH
Confidence 999775 5788899999999999974 267899999987689998742 26799999998789999
Q ss_pred HHHHHHHHHHHHHhh
Q 042816 146 HVVMERIRRISQTCK 160 (163)
Q Consensus 146 ~~~~~~l~~~~~~~~ 160 (163)
++++++|.++++.++
T Consensus 374 ~~~~~~l~~~~~~~~ 388 (388)
T PRK08637 374 PELFDSIYKAIKDLR 388 (388)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998653
No 64
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=99.90 E-value=2.3e-22 Score=153.16 Aligned_cols=139 Identities=14% Similarity=0.265 Sum_probs=118.8
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIEC 79 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~ 79 (163)
+||+||+|+||++++++.+++.+.+....++++.+.|.++..+|+++ +++++.++.++++++.+.+.|+++ |+++
T Consensus 214 ~~gl~G~RiG~lv~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----~~~~~~~~~~~~~r~~l~~~L~~~~~~~~ 289 (354)
T PRK06358 214 FFAIPGLRLGYGLTSNKNLAEKLLQMREPWSINTFADLAGQTLLDDK----EYIKKTIQWIKEEKDFLYNGLSEFKGIKV 289 (354)
T ss_pred hccCcchhheeeecCCHHHHHHHHHhCCCCcchHHHHHHHHHHhccH----HHHHHHHHHHHHHHHHHHHHHhcCCCcEE
Confidence 48999999999998557899999988877889999999999999764 567888999999999999999988 8888
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
.+|+|+ |+|++++. ..++++.|++ +||.|.||+.|+..+++++||+++ ++++++..++.|.+++
T Consensus 290 ~~~~g~-f~~~~~~~---------~~~~~~~l~~-~gI~v~~~~~f~~~~~~~iRls~~--~~~~~~~l~~~l~~~~ 353 (354)
T PRK06358 290 YKPSVN-FIFFKLEK---------PIDLRKELLK-KGILIRSCSNYRGLDENYYRVAVK--SREDNKKLLKALEVIL 353 (354)
T ss_pred cCCcce-EEEEEcCc---------hHHHHHHHHH-CCeEEEECCCCCCCCCCEEEEEeC--CHHHHHHHHHHHHHHh
Confidence 888776 78999873 4789998887 899999999996445789999999 6678888888887654
No 65
>PRK07908 hypothetical protein; Provisional
Probab=99.90 E-value=3.6e-22 Score=151.78 Aligned_cols=142 Identities=16% Similarity=0.248 Sum_probs=119.3
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
.||+||+|+||+++ ++++++.+......++.+++.|.++..++++.. .+++++.++.++++++.+.+.|+++|+++.
T Consensus 205 ~~~l~GlRiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~ 281 (349)
T PRK07908 205 TWSLAGLRVGYALG-APDVLARLTRGRAHWPVGTLQLEAIAACCAPRA--VAEAAADAARLAADRAEMVAGLRAVGARVV 281 (349)
T ss_pred ccCCccceeeeeec-CHHHHHHHHhcCCCCCccHHHHHHHHHHhcccc--hHHHHHHHHHHHHHHHHHHHHHHhCCcEec
Confidence 48999999999999 999999998887778888899998888888542 477889999999999999999998888888
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
+|.+|+|+|++++. ...+.+.|. ++||.|.||+.|+..+++++|||++ ++++++..++.|++++.
T Consensus 282 ~p~~g~~~~~~~~~---------~~~~~~~l~-~~gI~v~~g~~f~~~~~~~vRis~~--~~~~~~~l~~al~~~~~ 346 (349)
T PRK07908 282 DPAAAPFVLVRVPD---------AELLRKRLR-ERGIAVRRGDTFPGLDPDYLRLAVR--PRAEVPVLVQALAEILK 346 (349)
T ss_pred cCCCceEEEEECCc---------HHHHHHHHH-hCCEEEEECCCCCCCCCCeEEEEeC--CCccHHHHHHHHHHHHh
Confidence 88999999999983 356666664 5899999999996545789999997 55677777777776653
No 66
>PRK06290 aspartate aminotransferase; Provisional
Probab=99.90 E-value=3.3e-22 Score=154.95 Aligned_cols=150 Identities=18% Similarity=0.262 Sum_probs=123.6
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
.||+||+|+||+++ |+++++.+...... ++++.+.|.++..+|+++ +++++.++.|+++++.+.+.|++.|+.
T Consensus 252 ~~g~~GlRiG~ii~-~~~l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~g~~ 326 (410)
T PRK06290 252 AYNMTGWRLAFVVG-NELIVKAFATVKDNNDSGQFIAIQKAGIYALDHP----EITEKIREKYSRRLDKLVKILNEVGFK 326 (410)
T ss_pred hcCCchhheEeEEe-CHHHHHHHHHHHhccccCCcHHHHHHHHHHhhCc----HHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 47899999999999 99999999888764 456678999999999885 567889999999999999999999999
Q ss_pred cccCCceeEEEeecCCccc-CCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec--CChhHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLIS-SYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL--LTEKDIHVVMERIRRI 155 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~--~~~~~l~~~~~~l~~~ 155 (163)
+.+|+||||+|+++|.... ..+..++.++++.|+++.+|.+.||+.|+ +|+||+++. .+++++++.++.|.+.
T Consensus 327 ~~~p~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~----~~lRi~~~~~~~~~~~~~~~~~~l~~~ 402 (410)
T PRK06290 327 AEMPGGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDAG----HFLRFSVTFEAKDEEEEDRILEEIKRR 402 (410)
T ss_pred ecCCCeeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCcccc----CeEEEEEEcccccccchhHHHHHHHHH
Confidence 9999999999999986421 11112678999999987788888988764 699999984 2667788888888887
Q ss_pred HHHh
Q 042816 156 SQTC 159 (163)
Q Consensus 156 ~~~~ 159 (163)
+.++
T Consensus 403 ~~~~ 406 (410)
T PRK06290 403 LSDV 406 (410)
T ss_pred Hhhc
Confidence 7654
No 67
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=99.90 E-value=2.9e-22 Score=148.61 Aligned_cols=150 Identities=21% Similarity=0.269 Sum_probs=135.9
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhc---ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc--
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLAR---FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-- 75 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~---~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-- 75 (163)
+||+||++++++|++|+++++.+.+... ..++|.++..|...+++++ ..|++.+++.++.|++++.+.|++.
T Consensus 233 tFNlaGL~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~~G---~~WLd~L~~yl~~N~~~~~~~l~~~~P 309 (388)
T COG1168 233 TFNLAGLKCAYIIISNRELRAKFLKRLKRNGLHGPSALGIIATEAAYNQG---EPWLDELLEYLKDNRDYVADFLNKHLP 309 (388)
T ss_pred cccchhhhheeEEecCHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc---hHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 6999999999999989998777655544 2579999999999999999 7999999999999999999999998
Q ss_pred CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHH
Q 042816 76 GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155 (163)
Q Consensus 76 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~ 155 (163)
++++..|+|.|.+|+|+.+.. .++.++.+.++++.+|.+.+|+.|+..+.+++|+++++ +++.+++++++|..+
T Consensus 310 ~v~v~~p~gTYL~WLD~r~l~-----l~d~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN~ac-pr~~L~eal~ri~~a 383 (388)
T COG1168 310 GVKVTEPQGTYLAWLDCRELG-----LDDSELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFAC-PRAILEEALERLKRA 383 (388)
T ss_pred CcEEecCCCceeeeeeccccC-----CChHHHHHHHHHhhcEeccCCCccCcCCCceEEEecCC-CHHHHHHHHHHHHHH
Confidence 999999999999999998753 36689999999999999999999998889999999998 999999999999988
Q ss_pred HHHh
Q 042816 156 SQTC 159 (163)
Q Consensus 156 ~~~~ 159 (163)
+...
T Consensus 384 l~~~ 387 (388)
T COG1168 384 LKKR 387 (388)
T ss_pred Hhcc
Confidence 7653
No 68
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=99.89 E-value=1.9e-22 Score=158.89 Aligned_cols=155 Identities=17% Similarity=0.253 Sum_probs=118.2
Q ss_pred CCCCCceeEEEEEecCHH-----HH--------HHH------------------------HHhhcc--cCCChHHHH---
Q 042816 1 DLSLPGFRISVIYSYNNS-----VL--------AAA------------------------KKLARF--SSVSAPSQN--- 38 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~-----~~--------~~~------------------------~~~~~~--~~~s~~~q~--- 38 (163)
+||+||||+||+++ +++ ++ +.+ +++..+ .++|++.|.
T Consensus 311 ~fg~~G~RlG~i~~-~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~a 389 (521)
T TIGR03801 311 YFGATGWRLGTIAL-HKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMA 389 (521)
T ss_pred hccCchhhhhhhhc-CchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHH
Confidence 48999999999999 543 22 111 333332 467888886
Q ss_pred --HHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCceeEEEeecCCcccC-CC---------hhhHHH
Q 042816 39 --LLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISS-YS---------EKGELE 106 (163)
Q Consensus 39 --~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~-~~---------~~~~~~ 106 (163)
++..++..+ +.+.+.+++.+++|++.+.+.| ...+...+|+|+||+|+++++.... .+ ..++.+
T Consensus 390 l~a~~all~~~---~~y~~~~~~~~~~R~~~l~~~L-g~~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~ 465 (521)
T TIGR03801 390 LFSLFALMDKE---NAYKAETKDICRRREKLLFRGL-GLPLQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVD 465 (521)
T ss_pred HHHHHHHhccc---hhHHHHHHHHHHHHHHHHHHhc-CCCCcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhccCCHHH
Confidence 345666654 6789999999999999999998 2233346799999999999863210 00 115789
Q ss_pred HHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHhhh
Q 042816 107 LWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 107 ~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
|+.+|++++||.+.||..|+.. ++++|||++..++++++++.++|++++.++..
T Consensus 466 ~~~~L~~e~gV~v~PG~~Fg~~-~~~vRisla~l~~~~~~~~~~rl~~~~~~~~~ 519 (521)
T TIGR03801 466 VLFRLAEETGIVLLPGGGFGGP-EWSVRVSLANLNEYDYAEIGRAIRKILDEYYE 519 (521)
T ss_pred HHHHHHHhCCEEEeCchhcCCC-CCeEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999853 67899999966889999999999999988764
No 69
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=99.89 E-value=5.5e-22 Score=149.91 Aligned_cols=138 Identities=12% Similarity=0.216 Sum_probs=112.3
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
.||+||+|+||+++ |+++++.+.+....++.+.+++.++. ...+ +.++++.++.++++++.+.+.|+++|+++.
T Consensus 194 ~~~l~GlRiGy~v~-~~~li~~l~~~~~~~~~~~~~~~~l~----~~~~-~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~ 267 (332)
T PRK06425 194 ILGIPSLRIGYIAT-DDYNMKISRKITEPWSVCDPAIDFIR----SIDL-DYVAKHSLDIMENERSYLINNLEAMGFRAA 267 (332)
T ss_pred hcCCchhhheeeec-CHHHHHHHHHcCCCCccCHHHHHHHH----Hhhh-HHHHHHHHHHHHHHHHHHHHHHHHCCCEEC
Confidence 48999999999999 99999999987766666666554432 2222 567788999999999999999999888876
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
.+.+|.|+|++++ ++.++++.|++ +||.|.||+.|+..+++|+||+++ ++++++..++.|++++
T Consensus 268 ~~~~g~f~~~~~~---------~~~~~~~~l~~-~gi~v~~~~~f~~~~~~~iRis~~--~~~~~~~l~~al~~~~ 331 (332)
T PRK06425 268 GDPSANFITFMIP---------DAHDFYSYLLK-NGILVRLLDDYECLGEQYIRIAIR--RRSFNIKLVNALRNFL 331 (332)
T ss_pred CCCCceEEEEEcC---------CHHHHHHHHHH-CCeEEEECCCCCCCCCCEEEEEeC--CHHHHHHHHHHHHHHh
Confidence 5556778999987 45789998887 899999999997555689999999 5578888888887764
No 70
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=99.89 E-value=9.5e-22 Score=150.30 Aligned_cols=140 Identities=18% Similarity=0.210 Sum_probs=114.2
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIEC 79 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~ 79 (163)
+||+||+|+||+++ |+++++.+.+....++++.+.|.++..+|+++.+ .+..+.++.++++++.+.+.|+++ |+..
T Consensus 221 ~~gl~GlRvGy~v~-~~~l~~~l~~~~~~~~~~~~~~~~a~~~l~~~~~--~~~~~~~~~~~~~r~~l~~~L~~~~~~~~ 297 (364)
T PRK04781 221 AHALAAARIGSLIA-NAELIAVLRRCQAPYPVPTPCAALAEQALSAPAL--AVTARRVAEVRAERERLHAALAQLPGVRR 297 (364)
T ss_pred hcccccceeeeeeC-CHHHHHHHHhccCCCCCCHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHHHHHHhCCCCCe
Confidence 48999999999999 9999999999988889999999999999988743 344555567899999999999988 7754
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
..|.+|+|+|++++ +..++.+.|.+ +||.|.||..|.. .++++||+++ ..++++..++.|.++.
T Consensus 298 ~~p~~g~f~~~~~~---------~~~~~~~~l~~-~gI~v~~~~~~~~-~~~~~Ris~~--~~~~~~~l~~al~~~~ 361 (364)
T PRK04781 298 VYPSQGNFLLVRFD---------DAEAAFQALLA-AGVVVRDQRAAPR-LSDALRITLG--TPEQNDRVLAALQRTQ 361 (364)
T ss_pred ECCCCCcEEEEEcC---------CHHHHHHHHHH-CCeEEeeCCCCCC-CCCeEEEeCC--CHHHHHHHHHHHHHHH
Confidence 45788899999987 34677877765 9999999988753 3689999999 4567777777776543
No 71
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=99.89 E-value=1e-21 Score=145.47 Aligned_cols=154 Identities=17% Similarity=0.269 Sum_probs=132.1
Q ss_pred CCCCceeEEEEEecCH-------HHHHHHHHhhcc-cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042816 2 LSLPGFRISVIYSYNN-------SVLAAAKKLARF-SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLR 73 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~-------~~~~~~~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 73 (163)
|=.||||+||++..++ .+++.+.+.... .+++++.|.|+..+|+... +++..+....++.+.++.++.|+
T Consensus 273 W~VPGWRlGWi~~hD~~gvf~~~~~~q~~~~~~~~~~~p~TiiQ~AlP~IL~kTp--~efF~k~~~~lk~na~l~y~~Lk 350 (447)
T KOG0259|consen 273 WIVPGWRLGWIALHDPRGVFRDTKVVQGIKNFLDIIPGPATIIQGALPDILEKTP--EEFFDKKLSFLKSNADLCYSRLK 350 (447)
T ss_pred cccCCceeeeEEEecccccccchHHHHHHHHHHhccCCccHhHHHHhHHHHHhCh--HHHHHHHHHHHHhhHHHHHHHHh
Confidence 6689999999999432 345666666663 6899999999999998654 68899999999999999999999
Q ss_pred hc-CCc-cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHH
Q 042816 74 QL-GIE-CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMER 151 (163)
Q Consensus 74 ~~-g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~ 151 (163)
.+ ++. ..+|+|.+|+|+.+.-.. -+.++|+.+|+++|.+++.+.+.||..|+. ++|+|++++. +.+.++++.+|
T Consensus 351 ~IP~l~cp~kPeg~mylmv~l~~s~-~~~~~dD~dFc~kL~~Eesv~~LPG~af~~--~nw~Ri~i~~-~~~~leea~~R 426 (447)
T KOG0259|consen 351 DIPCLTCPVKPEGCMYLMVKLNLSL-FPDIEDDVDFCQKLAREESVICLPGQAFGL--KNWLRIVITV-EEEMLEEAFSR 426 (447)
T ss_pred cCCCcccCcCCCcceEEEeccchhh-hccccccHHHHHHHhhhcceEEeccccccC--CCeEEEEEcc-ChHHHHHHHHH
Confidence 99 887 789999999999886321 123358899999999999999999999997 8999999998 88999999999
Q ss_pred HHHHHHHhhh
Q 042816 152 IRRISQTCKS 161 (163)
Q Consensus 152 l~~~~~~~~~ 161 (163)
|+++..++.+
T Consensus 427 ik~Fc~RH~~ 436 (447)
T KOG0259|consen 427 IKEFCDRHSK 436 (447)
T ss_pred HHHHHHhhhh
Confidence 9999998764
No 72
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=99.89 E-value=1.2e-21 Score=149.38 Aligned_cols=140 Identities=12% Similarity=0.213 Sum_probs=116.1
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIEC 79 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~ 79 (163)
.||+||+|+||++++++++++.+.+....++++.+.|.++..+++++ .+.++.++.++++++.+.+.|+.+ |+.+
T Consensus 213 ~~~~~G~RiG~~v~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~l~~~----~~~~~~~~~~~~~r~~l~~~L~~~~~~~~ 288 (356)
T PRK08056 213 FYAIPGLRLGYLVNSDDAAVARMRRQQMPWSINAFAALAGEVILQDR----AYQQATWQWLAEEGARFYQALCALPLLTV 288 (356)
T ss_pred hccCcchhheeeecCCHHHHHHHHHhCCCCchhHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHhcCCCcEE
Confidence 48999999999998557888888887767788999999999999764 556888999999999999999988 7777
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
.+| +|+|+|++++. ++.++++.|++ +||.|.||+.|....++++||+++ +.++++..++.|.+++
T Consensus 289 ~~~-~~~~~~~~~~~--------~~~~~~~~l~~-~gI~v~~~~~f~~~~~~~iRis~~--~~~~~~~l~~~l~~~~ 353 (356)
T PRK08056 289 WPG-RANYLFLRCER--------PDIDLQRALLT-QRILIRSCANYPGLDSRYYRVAIR--SAAENERLLAALRNVL 353 (356)
T ss_pred cCC-CCcEEEEEcCC--------ChHHHHHHHHH-CCeEEEECCCCCCCCCCEEEEEEc--CHHHHHHHHHHHHHHH
Confidence 655 67889999974 45789998886 899999999996555689999998 5577777777777654
No 73
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=99.88 E-value=2.3e-21 Score=148.63 Aligned_cols=137 Identities=14% Similarity=0.132 Sum_probs=114.2
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIEC 79 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~ 79 (163)
+||+||+|+||+++ |+++++.+.+....+++|.+.|.++..++++. +.+.+..++.+++ ++.+.+.|+++ ++.+
T Consensus 235 ~~g~~GlRiG~~v~-~~~l~~~l~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~-r~~l~~~L~~~~~~~~ 309 (374)
T PRK02610 235 AFRLAAHRVGYAIG-HPELIAVLEKVRLPYNLPSFSQLAAQLALEHR---QELLAAIPEILQE-RDRLYQALQELPQLRV 309 (374)
T ss_pred hccCcccceeeeec-CHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCH---HHHHHHHHHHHHH-HHHHHHHHHhCCCcEe
Confidence 47999999999999 99999999988877888999999999999876 5677777777665 67788999887 7765
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHh
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~ 159 (163)
.|++|+|+|++++... ++.++++.|.+ +||.|.++ ++++||+++. .+++++++++|.+++..+
T Consensus 310 -~p~~g~f~~~~l~~~~------~~~~~~~~l~~-~gi~v~~~-------~~~lRls~~~--~~~~~~~l~~l~~~l~~~ 372 (374)
T PRK02610 310 -WPSAANFLYLRLSQDA------ALAALHQALKA-QGTLVRHT-------GGGLRITIGT--PEENQRTLERLQAALTQL 372 (374)
T ss_pred -CCCcceEEEEeCCCCC------CHHHHHHHHHH-CCEEEEeC-------CCeEEEeCCC--HHHHHHHHHHHHHHHhhc
Confidence 4788999999998643 67889888765 89999763 4689999985 467899999999988765
No 74
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=99.88 E-value=1.2e-21 Score=149.30 Aligned_cols=136 Identities=13% Similarity=0.179 Sum_probs=116.2
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
.||+||+|+||+++ ++++++.+.+....+++|.++|.++..+++++ +++++.++.++++++.+.+.|++.|+.+.
T Consensus 223 ~~g~~GlRiG~~v~-~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (359)
T PRK03158 223 AYGLAALRVGYGIA-SEELIEKLNIARPPFNTTRIAQYAAIAALEDQ----AFLKECVEKNAEGLEQYYAFCKEYGLFYY 297 (359)
T ss_pred hhcCcchhhehhcC-CHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHHCCCeeC
Confidence 47899999999999 99999999888777889999999999999875 55677788889999999999988888776
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~ 155 (163)
+ .+|+|+|++++. ++.++++.|++ +||.|.||+.|+. ++++||+++ ..++++..++.|.++
T Consensus 298 ~-~~g~~i~~~~~~--------~~~~~~~~l~~-~gv~v~~g~~f~~--~~~iRi~~~--~~~~~~~l~~al~~~ 358 (359)
T PRK03158 298 P-SQTNFIFVDTGR--------DANELFEALLK-KGYIVRSGAALGF--PTGVRITIG--LKEQNDKIIELLKEL 358 (359)
T ss_pred C-CcCcEEEEECCC--------CHHHHHHHHHH-CCeEEeeCCCCCC--CCeEEEecC--CHHHHHHHHHHHHHh
Confidence 5 457899999863 57889999886 8999999999964 689999999 567888888888764
No 75
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=99.88 E-value=2.4e-21 Score=147.73 Aligned_cols=134 Identities=13% Similarity=0.110 Sum_probs=114.1
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
+||+||+|+||+++ |+++++.+.+....++++.+.|.++..+|.+ ++++++.++.++++++.+.+.|...+
T Consensus 223 ~~~~~GlRiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~----~~~~~~~~~~~~~~r~~l~~~L~~~~---- 293 (357)
T PRK14809 223 AYGLAGLRLGYAVV-PEEWADAYARVNTPFAASELACRAGLAALDD----DEHVERTVETARWAREYIREELDAPT---- 293 (357)
T ss_pred HhcCcchhheeeec-CHHHHHHHHHhCCCCCCCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHhcCcc----
Confidence 47899999999999 8999999998876778899999999999986 46788889999999999999997642
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
.|.+|+|+|++++ ++.++++.|.+ +||.|.||+.|+. ++++||+++ +.+++++++++|.++++
T Consensus 294 ~~~~g~f~~~~~~---------~~~~~~~~l~~-~gv~v~~g~~f~~--~~~iRls~~--~~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 294 WESAGNFVLAEVG---------DASAVAEAAQE-RGVIVRDCTSFGL--PECIRITCG--TREETERAVEVLNEVLA 356 (357)
T ss_pred CCCCCCEEEEECC---------CHHHHHHHHHH-CCEEEEECccCCC--CCeEEEecC--CHHHHHHHHHHHHHHhc
Confidence 2578899999885 45788888754 8999999999974 589999987 56899999999998764
No 76
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=99.88 E-value=6.1e-21 Score=144.59 Aligned_cols=138 Identities=19% Similarity=0.248 Sum_probs=117.1
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
.||+||+|+||+++ |+++++.+.+....+++|.+.|.++..+|+++ .+.++.++.++++++.+.+.|+++|+++.
T Consensus 199 ~~gl~GlRiGy~v~-~~~li~~l~~~~~~~~vs~~~q~a~~~~L~~~----~~~~~~~~~~~~~r~~l~~~L~~~g~~~~ 273 (339)
T PRK06959 199 FFGLAGVRAGFVLA-APALLAALRDALGAWTVSGPARHAVRAAFADA----AWQAAMRERLAADGARLAALLRAHGFAVH 273 (339)
T ss_pred hcCCcchheEEEec-CHHHHHHHHHhcCCCCCcHHHHHHHHHHhCcH----HHHHHHHHHHHHHHHHHHHHHHHCCCCcc
Confidence 48999999999999 99999999999888889999999999999986 45678899999999999999999987765
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHhh
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~ 160 (163)
.+++|+|++++ ++.++.+.|.+ +||.|++ |+. .+++||+++. ++++++..++.|.++++.+.
T Consensus 274 --~~~~f~~~~~~---------~~~~l~~~l~~-~GI~vr~---~~~--~~~lRisi~~-~~~e~~~l~~al~~~~~~~~ 335 (339)
T PRK06959 274 --ATPLFSWTDDP---------RAAALHAALAR-RGIWTRY---FAP--PPSVRFGLPA-DEAEWQRLEDALAECVPTLA 335 (339)
T ss_pred --CcceEEEEeCC---------CHHHHHHHHHh-CCeEEEE---CCC--CCeEEEECCC-CHHHHHHHHHHHHHHHHHHh
Confidence 36799999986 35678888876 8999984 432 5699999964 66788999999988887765
Q ss_pred h
Q 042816 161 S 161 (163)
Q Consensus 161 ~ 161 (163)
.
T Consensus 336 ~ 336 (339)
T PRK06959 336 A 336 (339)
T ss_pred h
Confidence 4
No 77
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=99.88 E-value=1.6e-22 Score=151.27 Aligned_cols=152 Identities=17% Similarity=0.288 Sum_probs=126.3
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHH-----HHHHHHHHHHHHHHHHHHHHHhh
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFV-----QKFININRERLRRLYVKFVAGLR 73 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~l~~~l~ 73 (163)
+||++|||+||+++ |+.+......+... ..++++.|.+.+.++..+.-. ..++..+.+.|+++++.|.+.|.
T Consensus 246 tf~~TGWrlGW~ig-p~~L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~ 324 (420)
T KOG0257|consen 246 TFGVTGWRLGWAIG-PKHLYSALFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALE 324 (420)
T ss_pred eeeeeeeeeeeeec-hHHhhhhHHHHhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999 99999999988884 578999998888777654200 15666799999999999999999
Q ss_pred hcCCccccCCceeEEEeecCC--ccc---C-CChhhHHHHHHHHHHhcCeEEcCCCCCCCCC-----CceEEEEEecCCh
Q 042816 74 QLGIECAKSNGGFYCWADMSG--LIS---S-YSEKGELELWDKLLNVAKVNVTPGSSCHCIE-----PGWFSFSFTLLTE 142 (163)
Q Consensus 74 ~~g~~~~~~~~g~~~~~~~~~--~~~---~-~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~-----~~~iRi~~~~~~~ 142 (163)
+.|+++..|+|+||+|++++. .+. . ....++..++.+++++.|+.+.|++.|+... .+++|+++.. +.
T Consensus 325 ~lg~~v~~p~gayyl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~~~~r~~~~k-~~ 403 (420)
T KOG0257|consen 325 ELGLKVTGPEGAYYLWADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVAERLVRFCFCK-AD 403 (420)
T ss_pred hcCCccccCCCceEEEEeccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCchhhHHHHHHHHHHHHh-hH
Confidence 999999999999999999981 110 0 1112678899999999999999999998643 5689999988 88
Q ss_pred hHHHHHHHHHHH
Q 042816 143 KDIHVVMERIRR 154 (163)
Q Consensus 143 ~~l~~~~~~l~~ 154 (163)
+.++++++++++
T Consensus 404 ~~L~~a~e~l~~ 415 (420)
T KOG0257|consen 404 ETLRKAIERLKK 415 (420)
T ss_pred HHHHHHHHHHhh
Confidence 999999999983
No 78
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=99.88 E-value=5.6e-21 Score=146.40 Aligned_cols=137 Identities=12% Similarity=0.147 Sum_probs=111.0
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
.||+||+|+||++++++++++.+.+....+++|.+.|.++..++.+. +++++.++.++++++.+.+.|+++|+.+.
T Consensus 232 ~~~l~GlRiG~~i~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~l~~~----~~~~~~~~~~~~~r~~l~~~L~~~g~~~~ 307 (371)
T PRK05166 232 AYGLAGLRVGYGLVSDPELVGLLDRVRTPFNVNGAAQAAALAALDDE----EHLAKGVALALAERERLKKELAEMGYRIA 307 (371)
T ss_pred hhhcchhheeeeecCCHHHHHHHHHhccCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHHCcCeeC
Confidence 47899999999886578999999887777889999998888888874 56788889999999999999999888764
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~ 155 (163)
|.+|+|+|++++. ++.++++.|++ +||.|.||..++. ++++||+++. .++++...+.|..+
T Consensus 308 -p~~g~fl~~~~~~--------~~~~l~~~l~~-~gi~v~p~~~~~~--~~~iRi~~~~--~~~~~~l~~~l~~i 368 (371)
T PRK05166 308 -PSRANFLFFDARR--------PASAVAEALLR-QGVIVKPWKQPGF--ETFIRVSIGS--PEENDHFVAALDKV 368 (371)
T ss_pred -CCcCCEEEEeCCC--------CHHHHHHHHHH-CCeEEecCCCCCC--CCeEEEEcCC--HHHHHHHHHHHHHH
Confidence 5678899999864 56889999887 7999999986543 7899999995 34445555555443
No 79
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=99.88 E-value=5.4e-21 Score=146.90 Aligned_cols=137 Identities=15% Similarity=0.151 Sum_probs=113.0
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-Ccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG-IEC 79 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~ 79 (163)
.||+||+|+||+++ ++++++.+.+....++++.+.|.++..+|++. +++++.++.++++++.+.+.|++++ +.+
T Consensus 241 ~~glaGlRiGy~~~-~~~~i~~l~~~~~~~~~~~~~q~aa~~aL~~~----~~~~~~~~~~~~~r~~l~~~L~~~~~~~~ 315 (380)
T PLN03026 241 RAGLAGLRVGYGAF-PLSIIEYLWRAKQPYNVSVAAEVAACAALSNP----KYLEDVKNALVEERERLFGLLKEVPFLEP 315 (380)
T ss_pred hhcCccccceeeec-CHHHHHHHHHhcCCCCCCHHHHHHHHHHhhCH----HHHHHHHHHHHHHHHHHHHHHHHCCCCeE
Confidence 48999999999999 99999999988888889999999999999874 5678889999999999999999985 444
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~ 154 (163)
.|.+|+|+|++++... ++.++++.|++ +||.|+++..++ .++++|||++. .++++..++.|.+
T Consensus 316 -~p~~~~f~~~~~~~~~------~~~~~~~~l~~-~gI~v~~~~~~~--~~~~lRis~~~--~~~~~~l~~al~~ 378 (380)
T PLN03026 316 -YPSDANFILCRVTSGR------DAKKLKEDLAK-MGVMVRHYNSKE--LKGYIRVSVGK--PEHTDALMEALKQ 378 (380)
T ss_pred -CCCCCeEEEEECCCCC------CHHHHHHHHHH-CCeEEEECCCCC--CCCEEEEecCC--HHHHHHHHHHHHH
Confidence 5788999999998532 67889998885 899999987643 36799999994 4555555555543
No 80
>PRK06836 aspartate aminotransferase; Provisional
Probab=99.87 E-value=8.7e-21 Score=146.40 Aligned_cols=140 Identities=27% Similarity=0.465 Sum_probs=114.8
Q ss_pred CCCCCceeEEEEEecCHHHHH------HHHHhhc---ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVIYSYNNSVLA------AAKKLAR---FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAG 71 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~------~~~~~~~---~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 71 (163)
+||+||+|+||+++ ++++.+ .+..... .++++.+.|.++..+++++. .++.|+++++.+.+.
T Consensus 245 ~~~~pGlRiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~--------~~~~~~~~r~~l~~~ 315 (394)
T PRK06836 245 SLSLPGERIGYIAV-NPEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDATV--------DVSIYKRNRDLLYDG 315 (394)
T ss_pred hccCcceeeEEEec-CHHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCChH--------HHHHHHHHHHHHHHH
Confidence 47899999999999 776533 2221222 24688899999999998751 256788899999999
Q ss_pred hhhcCCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHH
Q 042816 72 LRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMER 151 (163)
Q Consensus 72 l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~ 151 (163)
|+++|+.+.+|+||||+|+++|.. ++.++++.|.+ +||.|.||+.|+. ++++||+++. +++++++++++
T Consensus 316 L~~~g~~~~~~~gg~~~~~~~~~~-------~~~~~~~~l~~-~gv~v~~g~~f~~--~~~iRi~~~~-~~~~~~~~i~~ 384 (394)
T PRK06836 316 LTELGFECVKPQGAFYLFPKSPEE-------DDVAFCEKAKK-HNLLLVPGSGFGC--PGYFRLSYCV-DTETIERSLPA 384 (394)
T ss_pred HHhCCCEeecCCceEEEEEeCCCC-------CHHHHHHHHHh-CCEEEECchhcCC--CCeEEEEecC-CHHHHHHHHHH
Confidence 999999999999999999998862 56788877755 8999999999974 5899999995 99999999999
Q ss_pred HHHHHHHhh
Q 042816 152 IRRISQTCK 160 (163)
Q Consensus 152 l~~~~~~~~ 160 (163)
|.+++++++
T Consensus 385 l~~~l~~~~ 393 (394)
T PRK06836 385 FEKLAKEYK 393 (394)
T ss_pred HHHHHHHhc
Confidence 999998875
No 81
>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]
Probab=99.87 E-value=7.1e-21 Score=142.91 Aligned_cols=155 Identities=21% Similarity=0.241 Sum_probs=128.1
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCCh---HHHHHHHHHHHHHHHHHHHHHHHHhhhc---
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDT---KFVQKFININRERLRRLYVKFVAGLRQL--- 75 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~--- 75 (163)
.||+|+||+++ ++.+++.+...... .++|.+.|.++-++|+.- .| -+|+.+.+..|.+|++++..+|.+.
T Consensus 298 aPGlRlG~it~-~~~~l~ril~~ae~~t~~pSg~sq~iv~a~l~~wgqeG~-~~wi~~l~~~Yt~Rrn~~l~Al~kylp~ 375 (472)
T KOG0634|consen 298 APGLRLGWITG-NSLFLKRILDLAEVATSGPSGFSQGIVYAMLKRWGQEGF-LRWIQHLRSSYTERRNALLSALDKYLPK 375 (472)
T ss_pred cCcceeEEeec-CHHHHHHHhhhcceeecCcccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 69999999999 88888888877774 579999999998888752 23 5899999999999999999999997
Q ss_pred C-CccccCCceeEEEeecCCccc---CCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-C----CceEEEEEecCChhHHH
Q 042816 76 G-IECAKSNGGFYCWADMSGLIS---SYSEKGELELWDKLLNVAKVNVTPGSSCHCI-E----PGWFSFSFTLLTEKDIH 146 (163)
Q Consensus 76 g-~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-~----~~~iRi~~~~~~~~~l~ 146 (163)
+ +++.+|.||+|+|++++ ++. +++....+++...++.++||.+.+|+.|... . +-++|++++..+.|+++
T Consensus 376 ~~~~~~~P~aGmFiwv~i~-~~~~~~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a~a~~e~l~ 454 (472)
T KOG0634|consen 376 SVCEYHPPKAGMFIWVEIP-YINFDTKKSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIAFAEPEKLD 454 (472)
T ss_pred CeeEEecCCcceEEEEEec-ccccccccchHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEeecCCHHHHH
Confidence 5 89999999999999998 221 1222236677777777799999999999754 2 23999999988999999
Q ss_pred HHHHHHHHHHHHhhh
Q 042816 147 VVMERIRRISQTCKS 161 (163)
Q Consensus 147 ~~~~~l~~~~~~~~~ 161 (163)
++++++..+++++-.
T Consensus 455 ~g~~rf~~~ike~f~ 469 (472)
T KOG0634|consen 455 EGIERFGSVIKEHFI 469 (472)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999987643
No 82
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=99.87 E-value=3.1e-21 Score=147.53 Aligned_cols=138 Identities=14% Similarity=0.152 Sum_probs=117.4
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
+||+||+|+||+++ ++++++.+.+....+++|.++|.++..+|+++ ++.+..++.+.++++.+.+.++.+|+++.
T Consensus 223 ~~~l~GlRiG~~i~-~~~~~~~l~~~~~~~~~~~~~q~aa~~~l~~~----~~~~~~~~~~~~~r~~~~~~l~~~g~~~~ 297 (366)
T PRK01533 223 AYGLASFRVGYAVG-HEELIEKLNVVRLPFNVSSLAQKAATIAFGDD----EFIEEIVRVNTEGLRQYESFCKENEIPFY 297 (366)
T ss_pred HhcChHHHHhHHhC-CHHHHHHHHHhcCCCCcCHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHhCCCccC
Confidence 48999999999999 89999999988777899999999999999875 55667778888888889999988899988
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHhh
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~ 160 (163)
+|+|+ |+|++++ ++.++.+.|++ +||.|++ | ++++||+++ +.++++..++.|+++++..+
T Consensus 298 ~~~~n-f~~~~~~---------~~~~~~~~l~~-~GI~Vr~---~----~~~iRis~~--~~~~~~~l~~al~~~~~~~~ 357 (366)
T PRK01533 298 QSQTN-FIFLPVE---------NGGEIYEACAH-AGFIIRP---F----PNGVRITVG--TREQNEGVISVLQQHFENKK 357 (366)
T ss_pred CCcCc-EEEEeCC---------CHHHHHHHHHH-CCcEEcc---C----CCceEEeCC--CHHHHHHHHHHHHHHHHhcc
Confidence 88655 7999986 34678888876 9999998 3 478999999 66899999999999988776
Q ss_pred hcC
Q 042816 161 SHS 163 (163)
Q Consensus 161 ~~~ 163 (163)
+.|
T Consensus 358 ~~~ 360 (366)
T PRK01533 358 RKS 360 (366)
T ss_pred ccc
Confidence 654
No 83
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=99.87 E-value=1.9e-20 Score=143.08 Aligned_cols=140 Identities=18% Similarity=0.237 Sum_probs=119.5
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
+||+||+|+||+++ ++++++.+.+....++.|.+.|.++..++++. .++++.++.++++++.+.+.|++.|+.+.
T Consensus 226 ~~g~~G~RiG~l~~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 300 (367)
T PRK02731 226 AYGLAGLRVGYGIA-PPEIIDALNRVRQPFNVNSLALAAAVAALDDD----AFVEKSRALNAEGMAWLTEFLAELGLEYI 300 (367)
T ss_pred hhcCcccceeeeeC-CHHHHHHHHHccCCCCCCHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHHCCCccC
Confidence 37899999999999 89999999988777788999999999999874 56788899999999999999999888877
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
|.+|+|+|++++... ++.++++.|.+ +||.|.|+..|+. ++++||+++ +.++++..++.|.+++.
T Consensus 301 -~~~g~~~~i~~~~~~------~~~~~~~~L~~-~gI~v~~~~~~~~--~~~iRis~~--~~~e~~~l~~aL~~~~~ 365 (367)
T PRK02731 301 -PSVGNFILVDFDDGK------DAAEAYQALLK-RGVIVRPVAGYGL--PNALRITIG--TEEENRRFLAALKEFLA 365 (367)
T ss_pred -CCCceEEEEECCCCC------CHHHHHHHHHH-CCEEEEeCCCCCC--CCeEEEecC--CHHHHHHHHHHHHHHHh
Confidence 456789999996543 67899998876 8999999988863 689999998 55788998888887754
No 84
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=99.86 E-value=3e-20 Score=142.27 Aligned_cols=144 Identities=13% Similarity=0.143 Sum_probs=120.6
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
+||+||+|+||+++ |+++++.+.+....+++|.+.|.++..+|+++ +++++.++.++++++.+.+.|++.|+++.
T Consensus 224 ~~g~~GlRiG~~v~-~~~~~~~l~~~~~~~~~s~~~q~~~~~~l~~~----~~~~~~~~~~~~~r~~~~~~L~~~g~~~~ 298 (369)
T PRK08153 224 AYGLAGARVGYAIG-APGTIKAFDKVRNHFGMNRIAQAAALAALKDQ----AYLAEVVGKIAAARDRIAAIARANGLTPL 298 (369)
T ss_pred hccCcchheeeeec-CHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHHCCCccC
Confidence 47999999999999 89999999988877889999999999999874 56778899999999999999998888755
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEc-CCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHh
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT-PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~-pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~ 159 (163)
|.+++|+|++++... ..+..+.++|++ +||.|. |+... .++++||+++ ++++++..++.|.+++..+
T Consensus 299 -p~~~~f~~~~~~~~~-----~~a~~l~~~l~~-~Gi~v~~p~~~~---~~~~iRis~~--~~~~~~~~~~al~~~~~~~ 366 (369)
T PRK08153 299 -PSATNFVAIDCGRDG-----AFARAVLDGLIA-RDIFVRMPGVAP---LDRCIRVSCG--PDEELDLFAEALPEALEAA 366 (369)
T ss_pred -CCcCcEEEEECCCCc-----ccHHHHHHHHHH-CCeEEeeCCCCC---CCCeEEEecC--CHHHHHHHHHHHHHHHHHh
Confidence 688999999986310 256788988886 899995 66532 2579999999 6689999999999998766
Q ss_pred hh
Q 042816 160 KS 161 (163)
Q Consensus 160 ~~ 161 (163)
++
T Consensus 367 ~~ 368 (369)
T PRK08153 367 RK 368 (369)
T ss_pred hc
Confidence 54
No 85
>PRK06225 aspartate aminotransferase; Provisional
Probab=99.86 E-value=5.1e-20 Score=141.45 Aligned_cols=151 Identities=15% Similarity=0.202 Sum_probs=123.2
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhc-ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLAR-FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~ 78 (163)
.||+||+|+||+++ ++++++.+..... .++++.+.|.++...+... ++++++.++.++++++.+.+.|+++ |+.
T Consensus 226 ~~g~~G~RiG~i~~-~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 301 (380)
T PRK06225 226 IFGMAGLRIGAVVA-TPDLIEVVKSIVINDLGTNVIAQEAAIAGLKVK---DEWIDRIRRTTFKNQKLIKEAVDEIEGVF 301 (380)
T ss_pred hcCCccceeEEEec-CHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHHhCcCCc
Confidence 37899999999999 8999999887754 4678899999988888764 5677888889999999999999986 643
Q ss_pred c-ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-CCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 79 C-AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI-EPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 79 ~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
+ ..|.+|+|+|++++..- .+..++++.|.+ +||.+.||+.|+.. +++++|++++. +++++++++++|.+++
T Consensus 302 ~~~~~~~g~~~~~~~~~~~-----~~~~~l~~~l~~-~gi~v~~g~~~~~~~~~~~iR~s~~~-~~e~l~~~~~~l~~~~ 374 (380)
T PRK06225 302 LPVYPSHGNMMVIDISEAG-----IDPEDLVEYLLE-RKIFVRQGTYTSKRFGDRYIRVSFSI-PREQVEVFCEEFPDVV 374 (380)
T ss_pred cccCCCCCeEEEEEccccc-----CCHHHHHHHHHH-CCEEEcCCcccCcCCCCceEEEEeCC-CHHHHHHHHHHHHHHH
Confidence 3 24567788899986420 267889998885 89999999877532 36799999997 8899999999999999
Q ss_pred HHhhhc
Q 042816 157 QTCKSH 162 (163)
Q Consensus 157 ~~~~~~ 162 (163)
++++++
T Consensus 375 ~~~~~~ 380 (380)
T PRK06225 375 ETLRTS 380 (380)
T ss_pred HHhhcC
Confidence 988753
No 86
>PLN02397 aspartate transaminase
Probab=99.86 E-value=4.9e-20 Score=143.38 Aligned_cols=136 Identities=17% Similarity=0.297 Sum_probs=110.1
Q ss_pred CCCCCceeEEEEE--ecCHHHHH----HHHHhhc--ccCCChHHHHHHHHhcCChHHHHH---HHHHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVIY--SYNNSVLA----AAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQK---FININRERLRRLYVKFV 69 (163)
Q Consensus 1 ~~~~~G~RiG~~i--~~~~~~~~----~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~l~ 69 (163)
+|++||||+||++ ++++++++ .+.+... .++++.+.|.++..+|+++.+.+. +++++++.|+++++.+.
T Consensus 270 ~~~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~ 349 (423)
T PLN02397 270 NMGLYGERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLY 349 (423)
T ss_pred cCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999995 43666554 3444443 246788899999999998754333 47889999999999999
Q ss_pred HHhhhcC----CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHH
Q 042816 70 AGLRQLG----IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDI 145 (163)
Q Consensus 70 ~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l 145 (163)
+.|+++| +++..|+||||+|++++ .+++++|++++||.|.+ .+ ||+++..+.+++
T Consensus 350 ~~L~~~~~~~~~~~~~p~gg~fl~~~l~-----------~~~~~~Ll~~~~V~v~~--------~~--Ri~~~~~~~~~i 408 (423)
T PLN02397 350 DALEARGSPGDWSHITKQIGMFSFTGLN-----------KEQVDRMTKEYHIYMTR--------DG--RISMAGLSSKNV 408 (423)
T ss_pred HHHHhcCCCCCCCcccCCceEEEecCCC-----------HHHHHHHHHhCCEEECC--------CC--eEEEeeCCHHHH
Confidence 9999987 78888999999999875 34889999989999973 22 999986699999
Q ss_pred HHHHHHHHHHHH
Q 042816 146 HVVMERIRRISQ 157 (163)
Q Consensus 146 ~~~~~~l~~~~~ 157 (163)
++++++|.++++
T Consensus 409 ~~~~~~i~~~~~ 420 (423)
T PLN02397 409 PYLADAIHAVVT 420 (423)
T ss_pred HHHHHHHHHHHh
Confidence 999999999975
No 87
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=99.85 E-value=2.5e-20 Score=140.81 Aligned_cols=134 Identities=18% Similarity=0.301 Sum_probs=111.2
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-Ccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG-IEC 79 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~ 79 (163)
+||+||+|+||+++ ++++++.+......+++|+++|.++..+++++ .+.++.++.++++++.+.+.|++++ +++
T Consensus 195 ~~g~~G~R~G~i~~-~~~~~~~l~~~~~~~~~s~~~q~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 269 (330)
T TIGR01140 195 FFGLAGLRLGFVVA-HPALLARLREALGPWTVNGPARAAGRAALADT----AWQAATRARLAAERARLAALLARLGGLEV 269 (330)
T ss_pred hhcCchhhhhheeC-CHHHHHHHHhcCCCCCchHHHHHHHHHHHhch----HHHHHHHHHHHHHHHHHHHHHHhCCCceE
Confidence 47899999999999 89999999988777788999999999999976 4456788999999999999999995 665
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERI 152 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l 152 (163)
. |.+|+|+|++++ ++.+++++|++ +||.+.||..|...+++++||++++ +.++ +.+++.|
T Consensus 270 ~-~~~~~f~~~~~~---------~~~~l~~~l~~-~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~-~~~~~~l 329 (330)
T TIGR01140 270 V-GGTALFLLVRTP---------DAAALHEALAR-RGILIRDFDNFPGLDPRYLRFALPT-DEEN-DRLEEAL 329 (330)
T ss_pred C-CCCCeEEEEEcC---------CHHHHHHHHHH-CCEEEEECCCCCCCCCCEEEEEecC-HHHH-HHHHHhh
Confidence 4 567899999987 35789999987 8999999999964456899999996 4433 5555544
No 88
>PTZ00376 aspartate aminotransferase; Provisional
Probab=99.85 E-value=7.4e-20 Score=141.65 Aligned_cols=135 Identities=21% Similarity=0.314 Sum_probs=108.5
Q ss_pred CCCCCceeEEEE---EecCHHHHHHH----HHhhc-c-cCCChHHHHHHHHhcCChHHHH---HHHHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVI---YSYNNSVLAAA----KKLAR-F-SSVSAPSQNLLVSMLSDTKFVQ---KFININRERLRRLYVKF 68 (163)
Q Consensus 1 ~~~~~G~RiG~~---i~~~~~~~~~~----~~~~~-~-~~~s~~~q~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~l 68 (163)
+|++||+|+||+ ++ |+++++.+ .+... . .+++.+.|.++..+|+++.+.+ +++++.++.|+++++.+
T Consensus 252 ~~~~~GlRvG~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l 330 (404)
T PTZ00376 252 NMGLYGERIGALHIVCA-NKEEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLL 330 (404)
T ss_pred cccccccccceEEEEeC-CHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999998 45 77765544 33322 3 3567899999999999875433 44677888999999999
Q ss_pred HHHhhhcC----CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhH
Q 042816 69 VAGLRQLG----IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKD 144 (163)
Q Consensus 69 ~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~ 144 (163)
.+.|++++ +++..|+||||+|++++ .+++++|++++||.+.|| + ||+++..+.++
T Consensus 331 ~~~L~~~~~~~~~~~~~p~gg~f~~~~~~-----------~~~~~~L~~~~~v~v~p~--------~--Ris~~~~~~~~ 389 (404)
T PTZ00376 331 YDELKALGSPGDWEHIINQIGMFSFTGLT-----------KEQVERLIEKYHIYLLDN--------G--RISVAGLTSKN 389 (404)
T ss_pred HHHHHhcCCCCcccccccCceEEEecCCC-----------HHHHHHHHHhCCEeecCC--------C--eEEEeccCHHh
Confidence 99999874 45668999999999875 467888998779999997 1 99998568899
Q ss_pred HHHHHHHHHHHHH
Q 042816 145 IHVVMERIRRISQ 157 (163)
Q Consensus 145 l~~~~~~l~~~~~ 157 (163)
+++++++|.+++.
T Consensus 390 ~~~~~~~l~~~~~ 402 (404)
T PTZ00376 390 VDYVAEAIHDVVR 402 (404)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998865
No 89
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=99.85 E-value=4.2e-20 Score=140.91 Aligned_cols=137 Identities=18% Similarity=0.170 Sum_probs=114.6
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
+||+||+|+||+++ ++++++.+.+....++.+.+.|.++..++++. +++++.++.++++++.+.+.|+ +.+.
T Consensus 224 ~~g~~GlRiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~----~~~~~~~~~~~~~r~~l~~~l~---~~~~ 295 (361)
T PRK00950 224 VFGLAGLRIGYGFV-PEWLIDYYMRAKTPFSLTRLSQAAAIAALSDK----EYIEKSIEHGIKSREYLYNELP---FKVY 295 (361)
T ss_pred hhcCchhhcchhcC-CHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHhhcC---eeEC
Confidence 47899999999999 99999999988877788999999999999874 5567788888899999888876 4443
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
|.+|+|+|++++. .++.++++.|.+ +||.|.||..|+..+++++||+++ +.++++++++.|++++
T Consensus 296 -~~~~~~i~~~~~~-------~~~~~~~~~l~~-~gv~v~~~~~f~~~~~~~lRis~~--~~~~~~~l~~~L~~il 360 (361)
T PRK00950 296 -PSEANFVLVDVTP-------MTAKEFCEELLK-RGVIVRDCTSFRGLGDYYIRVSIG--TFEENERFLEILKEIV 360 (361)
T ss_pred -CCcceEEEEECCC-------CCHHHHHHHHHH-CCEEEeeCCccCCCCCCeEEEECC--CHHHHHHHHHHHHHHh
Confidence 5678899999953 267899999986 899999999887555789999998 5578899999888765
No 90
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=99.85 E-value=2.1e-20 Score=142.39 Aligned_cols=136 Identities=16% Similarity=0.225 Sum_probs=112.8
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCccc
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIECA 80 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~ 80 (163)
||+||+|+||+++ ++++++.+......++++.+.|.++..++++. +++++.++.++++++.+.+.|+.. |+.+.
T Consensus 219 ~~~~GlRiG~~i~-~~~~i~~~~~~~~~~~~~~~~q~~a~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 293 (356)
T PRK04870 219 LGLAGLRLGYLAG-HPAWIAELDKVRPPYNVNVLTQATALFALEHV----DVLDAQAAQLRAERTRLAAALAALPGVTVF 293 (356)
T ss_pred hhhHHHhhhhhhC-CHHHHHHHHHccCCCcCCHHHHHHHHHHHhCH----HHHHHHHHHHHHHHHHHHHHHHhCCCcEEC
Confidence 5899999999999 89999999888777789999999998998864 346788888999999999999988 88765
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~ 155 (163)
|.+|+|+|++++ ++.++++.|.+ +||.|.||..|+...++++||+++ ..++++..++.|.++
T Consensus 294 -~~~~~~~~~~~~---------~~~~~~~~l~~-~gI~v~~~~~f~~~~~~~iRis~~--~~~~~~~l~~al~~~ 355 (356)
T PRK04870 294 -PSAANFILVRVP---------DAAAVFDGLKT-RGVLVKNLSGMHPLLANCLRVTVG--TPEENAQFLAALKAA 355 (356)
T ss_pred -CCCCeEEEEECC---------CHHHHHHHHHH-CCEEEEECCCCCCCCCCeEEEeCC--CHHHHHHHHHHHHHh
Confidence 566779999987 34677877654 999999999997555789999999 457777777777654
No 91
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=99.84 E-value=1.5e-19 Score=137.30 Aligned_cols=141 Identities=21% Similarity=0.335 Sum_probs=120.7
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc-c
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE-C 79 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~-~ 79 (163)
.||+||+|+||+++ ++++++.+.+.+.+|++|.++|.++..++.+. +++++.++...+.++.+.+.|+.+|+. +
T Consensus 213 a~gLAGlRlGy~ia-~~~~i~~l~~vr~p~~v~~~a~~aa~aal~~~----~~~~~~~~~~~~~r~rl~~~l~~~~~~~v 287 (356)
T COG0079 213 AFGLAGLRVGYAIA-NPELIAALNKVRPPFNVSSPALAAAIAALRDA----DYLEESVERIREERERLYAALKALGLFGV 287 (356)
T ss_pred hhhcchhceeeccC-CHHHHHHHHHhcCCCCCCHHHHHHHHHHcccH----HHHHHHHHHHHHHHHHHHHHHHhCCCCee
Confidence 38999999999999 99999999999999999999999999999995 778899999999999999999999855 6
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
.++. +.|++++++. . .+..+.+.|++ +||.|+++.. ....++|+||+++ ++++.+..++.|.+++..
T Consensus 288 ~pS~-aNFvlv~~~~-~------~~~~l~~~L~~-~giivR~~~~-~~~~~~~lRitvg--t~een~~ll~AL~~~~~~ 354 (356)
T COG0079 288 FPSQ-ANFVLVRVPD-A------EAAALAEALLK-KGILVRDCSS-VGLLPGYLRITVG--TPEENDRLLAALREVLKG 354 (356)
T ss_pred cCCC-CcEEEEECCC-c------cHHHHHHHHHH-CCEEEEeCCC-CCCCCCeEEEEeC--CHHHHHHHHHHHHHHHhc
Confidence 6555 6688889885 1 25678888887 8999999866 4445789999999 556779999999887754
No 92
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=99.83 E-value=4.7e-19 Score=133.86 Aligned_cols=132 Identities=23% Similarity=0.331 Sum_probs=105.7
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
+||+||+|+||+++ |+++++.+.+....++.|.+.|.++..+|.+. .+.++.++.+.++++.+.+.|+++|++
T Consensus 193 ~~gl~GlRiG~~v~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~----~~~~~~~~~~~~~r~~l~~~L~~~~~~-- 265 (330)
T PRK05664 193 FFGLAGARLGFVLA-EPALLRALAELLGPWTVSGPTRWLAQAALADT----PWQRRQRERLLAASQRLAALLRRHGLT-- 265 (330)
T ss_pred cccCCCcceEEEEe-CHHHHHHHHHhcCCCCCCHHHHHHHHHHHhCh----HHHHHHHHHHHHHHHHHHHHHHHCCCc--
Confidence 48999999999999 89999999988777788999999999999875 345678999999999999999998764
Q ss_pred cCCce--eEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 81 KSNGG--FYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 81 ~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
|.+| +|+|++++ ++.++++.|.+ +||.|.+ |. .++++||+++. +.+++++..+.|+++.
T Consensus 266 -~~~~~~~f~~~~~~---------~~~~~~~~l~~-~gi~v~~---f~--~~~~iRis~~~-~~~~~~~l~~al~~~~ 326 (330)
T PRK05664 266 -PAGGCALFQWVRTE---------DAAALHEFLAR-RGILTRL---FE--QPASLRFGLPA-DEADWARLDQALLAYR 326 (330)
T ss_pred -ccCCcceEEEEecC---------CHHHHHHHHHH-CCeEEEE---CC--CCCeEEEECCC-CHHHHHHHHHHHHHHH
Confidence 3445 78888875 46788888765 8999974 54 25799999995 4555565555555443
No 93
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=99.83 E-value=3.2e-19 Score=135.72 Aligned_cols=139 Identities=15% Similarity=0.245 Sum_probs=113.5
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc---cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF---SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGI 77 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 77 (163)
+||+||+|+||+++ ++++++.+...... ++++.+.|.++..++.+. ++.++.++.+.++++.+.+.|+++|+
T Consensus 211 ~~~~~GlR~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~g~ 285 (353)
T PRK05387 211 SRSLAGLRVGFAIG-HPELIEALNRVKNSFNSYPLDRLAQAGAIAAIEDE----AYFEETRAKVIATRERLVEELEALGF 285 (353)
T ss_pred hhcchhhhceeeec-CHHHHHHHHHhhccCCCCCcCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 47899999999999 99999999887752 468899999999999875 45667888899999999999999888
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
++. |.+|+|+|++++.. ++.++++.|.+ +||.|.+.... ..++++||+++ +.++++.+++.|.+++.
T Consensus 286 ~~~-~~~~~~~~~~~~~~-------~~~~~~~~l~~-~gi~v~~~~~~--~~~~~iRis~~--~~~~~~~~~~~L~~~~~ 352 (353)
T PRK05387 286 EVL-PSKANFVFARHPSH-------DAAELAAKLRE-RGIIVRHFNKP--RIDQFLRITIG--TDEEMEALVDALKEILA 352 (353)
T ss_pred eEC-CCcCcEEEEECCCC-------CHHHHHHHHHH-CCEEEEECCCC--CCCCeEEEEeC--CHHHHHHHHHHHHHHhh
Confidence 765 56788999998742 67899998876 89999753211 23689999998 55889999999988764
No 94
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=99.83 E-value=4.8e-20 Score=140.32 Aligned_cols=136 Identities=13% Similarity=0.193 Sum_probs=112.2
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIEC 79 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~ 79 (163)
.||+||+|+||+++ ++++++.+.+....+++|.+.|.++..+|.+.. .+++++.++.+.++++.+.+.|+++ |++.
T Consensus 214 ~~glaGlRiGy~i~-~~~~i~~l~~~~~~~~v~~~~~~~a~~~L~~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~ 290 (351)
T PRK01688 214 AFALAGLRCGFTLA-NEEVINLLLKVIAPYPLSTPVADIAAQALSPQG--IAAMRERVAEINANRQWLIAALKEIPCVEQ 290 (351)
T ss_pred hhcCHHHHHhHHhC-CHHHHHHHHhccCCCCCCHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHHHHHHHhCCCCCe
Confidence 38999999999999 999999999988888899999998989998653 3567888888999999999999998 6754
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERI 152 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l 152 (163)
..|.++.|+|++++ ++.++.+.|++ +||.|+++..|.. .++|+||+++ +.++++..++.|
T Consensus 291 ~~ps~~nfi~~~~~---------~~~~l~~~L~~-~gi~vr~~~~~~~-~~~~iRis~~--~~~e~~~l~~al 350 (351)
T PRK01688 291 VFDSETNYILARFT---------ASSAVFKSLWD-QGIILRDQNKQPG-LSNCLRITIG--TREECQRVIDAL 350 (351)
T ss_pred ECCCCCcEEEEEcC---------CHHHHHHHHHH-CCeEEEECCCcCC-CCCeEEEeCC--CHHHHHHHHHhh
Confidence 45667889999886 35788888886 8999998766532 2689999999 557878777765
No 95
>PRK09105 putative aminotransferase; Provisional
Probab=99.83 E-value=4.6e-19 Score=135.82 Aligned_cols=135 Identities=17% Similarity=0.321 Sum_probs=111.3
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
+||+||+|+||+++ ++++++.+... ..++++.+.|.++..+|.+. ++++..++.++++++.+.+.|++.|+++.
T Consensus 234 ~~g~~GlRiG~~v~-~~~~i~~l~~~-~~~~~~~~~~~aa~~~L~~~----~~~~~~~~~~~~~r~~l~~~L~~~g~~~~ 307 (370)
T PRK09105 234 LYGMAGMRLGLAAA-RPDLLAKLARF-GHNPLPVPAAAAGLASLRDP----KLVPQRRAENAAVREDTIAWLKKKGYKCT 307 (370)
T ss_pred hhcCCccceeeeec-CHHHHHHHHhc-CCCCcCHHHHHHHHHHHhCH----HHHHHHHHHHHHHHHHHHHHHHHCCCCcC
Confidence 47999999999999 99999999877 45568889999999999874 67888899999999999999999999999
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
+|+|+||+ ++++. ++.++++.|++ +||.| |..|. ..++++||+++ ++++++..++.|.+++
T Consensus 308 ~~~~~f~~-~~~~~--------~~~~l~~~L~~-~gI~v--~~~~~-~~~~~~Ris~~--~~~~~~~l~~al~~~~ 368 (370)
T PRK09105 308 PSQANCFM-VDVKR--------PAKAVADAMAK-QGVFI--GRSWP-IWPNWVRVTVG--SEEEMAAFRSAFAKVM 368 (370)
T ss_pred CCCCcEEE-EeCCC--------CHHHHHHHHHH-CCcEE--ecCCC-CCCCeEEEEcC--CHHHHHHHHHHHHHHh
Confidence 99998874 77762 66899999987 69998 44453 23789999999 4567777777776654
No 96
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=99.83 E-value=3.1e-19 Score=135.83 Aligned_cols=135 Identities=12% Similarity=0.172 Sum_probs=106.7
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIEC 79 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~ 79 (163)
+||+||+|+||+++ |+++++.+...+..++++.+.|.++..+++++ ++++..+.+.++++.+.+.|++. |+.+
T Consensus 214 ~~~~~GlRiG~~v~-~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-----~~~~~~~~~~~~r~~l~~~l~~~~g~~~ 287 (351)
T PRK14807 214 AFGLAGLRVGYAVA-NENILKYLNLVKSPYNINSLSQVIALKVLRTG-----VLKERVNYILNERERLIKELSKIPGIKV 287 (351)
T ss_pred hcccchhceeeeec-CHHHHHHHHHccCCCCcCHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence 47899999999999 99999999988777788999999999999864 23455566788888999999887 8877
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~ 155 (163)
.+ .+|+|+|++++ ++..+++.|++ +||.|.++..+. ..++++||+++. .++++..++.|+++
T Consensus 288 ~~-~~~~~~~i~~~---------~~~~~~~~l~~-~gV~v~~~~~~~-~~~~~iRis~~~--~~~~~~l~~~l~~~ 349 (351)
T PRK14807 288 YP-SKTNFILVKFK---------DADYVYQGLLE-RGILVRDFSKVE-GLEGALRITVSS--CEANDYLINGLKEL 349 (351)
T ss_pred Cc-CCccEEEEEcC---------CHHHHHHHHHH-CCEEEEECCCCC-CCCCeEEEEcCC--HHHHHHHHHHHHHh
Confidence 65 55778999987 35778887776 899999865432 236899999994 46667777777654
No 97
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=99.83 E-value=5.1e-19 Score=136.65 Aligned_cols=134 Identities=21% Similarity=0.338 Sum_probs=106.8
Q ss_pred CCCCCceeEEEEEe--cCHHH----HHHHHHhhc--ccCCChHHHHHHHHhcCChHH---HHHHHHHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVIYS--YNNSV----LAAAKKLAR--FSSVSAPSQNLLVSMLSDTKF---VQKFININRERLRRLYVKFV 69 (163)
Q Consensus 1 ~~~~~G~RiG~~i~--~~~~~----~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~l~ 69 (163)
+|++||+|+||+++ ++++. +..+..... .++++.+.|.+++.++.++.+ .+++++++++.|+++++.+.
T Consensus 247 ~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~ 326 (396)
T PRK09257 247 NFGLYGERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLV 326 (396)
T ss_pred cCccccccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999983 35443 344434332 345789999999999998743 26788999999999999999
Q ss_pred HHhhhcC----CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHH
Q 042816 70 AGLRQLG----IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDI 145 (163)
Q Consensus 70 ~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l 145 (163)
+.|++++ +++..|+||||+|++++ .+++..|++++||.+.|. + ||+++..+++++
T Consensus 327 ~~L~~~~~~~~~~~~~p~gg~~~w~~l~-----------~~~~~~l~~~~~V~~~p~--------~--ri~~~~~~~~~i 385 (396)
T PRK09257 327 EALKAKGPSRDFDFIARQRGMFSYSGLT-----------PEQVDRLREEFGVYAVGS--------G--RINVAGLNESNI 385 (396)
T ss_pred HHHHhcCCCCCcccccccceEEEecCCC-----------HHHHHHHHHcCCEEEcCC--------C--eEEEeeCCHHHH
Confidence 9999884 67889999999999886 235566777799999872 2 999986799999
Q ss_pred HHHHHHHHHH
Q 042816 146 HVVMERIRRI 155 (163)
Q Consensus 146 ~~~~~~l~~~ 155 (163)
++++++|.++
T Consensus 386 ~~~~~~i~~~ 395 (396)
T PRK09257 386 DYVAEAIAAV 395 (396)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 98
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=99.82 E-value=9.1e-19 Score=132.56 Aligned_cols=131 Identities=15% Similarity=0.202 Sum_probs=107.0
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
+||+||+|+||+++ |+++++.+.+.+..++++.++|.++..++++. ++..+.++.+.++++.+.+.|++.|+++.
T Consensus 203 ~~~l~GlRvG~~v~-~~~~~~~l~~~~~~~~~~~~~q~a~~~~l~~~----~~~~~~~~~~~~~r~~l~~~L~~~g~~~~ 277 (335)
T PRK14808 203 AFSLAAQRIGYVVS-SEKFIDAYNRVRLPFNVSYVSQMFAKVALDHR----EIFEERTKFIVEERERMKSALREMGYRIT 277 (335)
T ss_pred hccCcccceEEEEe-CHHHHHHHHHhcCCCCCCHHHHHHHHHHHhCH----HHHHHHHHHHHHHHHHHHHHHHHCCCEEC
Confidence 48999999999999 89999999888877889999999999998864 34566777888889999999999898888
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~ 154 (163)
+|+|+ |+|+.++.. +..++.+.|.+ +||.|++ | .+++||+++ +.++++..++.|.+
T Consensus 278 ~~~g~-f~~~~l~~~-------~~~~~~~~l~~-~Gi~V~~---~----~~~~Risi~--~~~~~~~~~~~l~~ 333 (335)
T PRK14808 278 DSRGN-FVFIFMEKE-------EKERLLEHLRA-KNIAVRS---F----REGVRITIG--KREENDMILKELEV 333 (335)
T ss_pred CCCCe-EEEEeCCCc-------cHHHHHHHHHH-CCeEEEE---C----CCCeEEecC--CHHHHHHHHHHHHh
Confidence 88655 679998842 45778887776 8999985 3 368999999 55787888777764
No 99
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=99.81 E-value=1.7e-18 Score=125.27 Aligned_cols=151 Identities=17% Similarity=0.215 Sum_probs=128.4
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc----
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL---- 75 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---- 75 (163)
.|+||.|+|-+++ +++++..+.+.... ..++.+.|++++++++.++.++---+-.|-.|+++.+...+.|++.
T Consensus 250 ~GLPG~R~GIiIa-ne~viqaitnmn~iisLap~~~G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp~~ 328 (417)
T COG3977 250 LGLPGSRCGIIIA-NEKVIQAITNMNGIISLAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRYLPEY 328 (417)
T ss_pred cCCCCcceeEEEc-cHHHHHHHHhccceeeecCCCccHHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHhcCcc
Confidence 5899999999999 99999999998885 5788999999999999998755555678889999999999988876
Q ss_pred CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-------CCceEEEEEecCChhHHHHH
Q 042816 76 GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI-------EPGWFSFSFTLLTEKDIHVV 148 (163)
Q Consensus 76 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-------~~~~iRi~~~~~~~~~l~~~ 148 (163)
-+.+.+|+|.+|+|+-+...= .+++++.+.|-+ .||.+.||+.|..+ ...++|+|+.. ++++++++
T Consensus 329 ~~~iHkpEGAIFlWLWf~dLP-----Itt~~LYq~LKa-~Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn~~~-~~~~ie~G 401 (417)
T COG3977 329 RCLIHKPEGAIFLWLWFKDLP-----ITTEELYQRLKA-RGVLMVPGHYFFPGLDKEWPHTHQCMRMNYVP-EPEKIEKG 401 (417)
T ss_pred ceeeecCCcceeehhhhccCC-----CCHHHHHHHHHh-CeEEEecccccCCCCCCCCCCccceEEEecCC-CHHHHHHH
Confidence 377889999999998775421 288999998855 89999999988642 25699999998 88999999
Q ss_pred HHHHHHHHHHhh
Q 042816 149 MERIRRISQTCK 160 (163)
Q Consensus 149 ~~~l~~~~~~~~ 160 (163)
+.+|.+.+++.-
T Consensus 402 va~lae~ve~~y 413 (417)
T COG3977 402 VAILAEEVERAY 413 (417)
T ss_pred HHHHHHHHHHHH
Confidence 999999887643
No 100
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=99.81 E-value=1.1e-18 Score=132.52 Aligned_cols=133 Identities=20% Similarity=0.310 Sum_probs=113.8
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCccc
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIECA 80 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~ 80 (163)
||+||+|+||+++ ++++++.+......++.+.++|.++..++++. .++++.++.++++++.+.+.|+++ |+++.
T Consensus 212 ~g~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 286 (346)
T TIGR01141 212 FGLAGLRIGYAIA-NAEIIDALNKVRAPFNLSRLAQAAAIAALRDD----DFIEKTVEEINAERERLYDGLKKLPGLEVY 286 (346)
T ss_pred hhchhhhceeeec-CHHHHHHHHhccCCCCCCHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHhcCCCEEC
Confidence 6899999999999 99999999888777788999999999999886 367889999999999999999998 88865
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERI 152 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l 152 (163)
|.+|+|+|++++. ++.++++.|.+ +||.+.||+.|+.. ++++|+|++ ++++++.+++.|
T Consensus 287 -~~~g~~~~~~~~~--------~~~~~~~~L~~-~gI~v~~g~~f~~~-~~~iRls~~--~~~~i~~~~~~l 345 (346)
T TIGR01141 287 -PSDANFVLIRFPR--------DADALFEALLE-KGIIVRDLNSYPGL-PNCLRITVG--TREENDRFLAAL 345 (346)
T ss_pred -CCcCCEEEEecCC--------CHHHHHHHHHH-CCeEEEeCCCcCCC-CCeEEEecC--CHHHHHHHHHHh
Confidence 4567899999874 46788988876 89999999988644 789999988 667888877765
No 101
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=99.81 E-value=6.4e-19 Score=134.28 Aligned_cols=136 Identities=17% Similarity=0.239 Sum_probs=108.9
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIEC 79 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~ 79 (163)
.||+||+|+||+++ ++++++.+......++++.+.|.++..+|.+.. .+++++.++.++++++.+.+.|+++ ++++
T Consensus 215 ~~~l~GlRlG~~i~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~l~~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~ 291 (354)
T PRK04635 215 AFALAGARCGFTLA-NEELIEILMRVIAPYPVPLPVSEIATQALSEAG--LARMKFQVLDLNAQGARLQAALSMYGGAKV 291 (354)
T ss_pred HhhhhHHHHhhhhC-CHHHHHHHHhhcCCCCCCHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHhCCCceE
Confidence 37899999999999 999999998877678889999999999987653 2456788889999999999999998 4888
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~ 154 (163)
.+|+ |.|+|++++ ++.++.+.|.+ +||.|.++..+. .++++|||++ ..++++..++.|++
T Consensus 292 ~~~~-g~f~~~~~~---------~~~~~~~~l~~-~gv~v~~~~~~~--~~~~lRis~~--~~e~~~~l~~al~~ 351 (354)
T PRK04635 292 LEGN-GNYVLAKFD---------DVDAVFKALWD-AGIVARAYKDPR--LANCIRFSFS--NRAETDKLIGLIRN 351 (354)
T ss_pred CCCC-CcEEEEECC---------CHHHHHHHHHH-CCEEEEECCCCC--CCCeEEEEeC--CHHHHHHHHHHHHH
Confidence 7775 568898887 34677776654 899998764432 3679999998 56787777777754
No 102
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=99.81 E-value=1.5e-18 Score=132.81 Aligned_cols=136 Identities=21% Similarity=0.328 Sum_probs=112.3
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
.||+||+|+||+++ ++++++.+......+++|++.|.++..+|++. +.+ .+.++.+.++++.+.+.|+++|+++.
T Consensus 229 ~~g~~GlRiG~~~~-~~~~~~~l~~~~~~~~~s~~~~~a~~~~l~~~---~~~-~~~~~~~~~~~~~l~~~L~~~g~~~~ 303 (368)
T PRK03317 229 AFAFAGGRLGYLAA-APAVVDALRLVRLPYHLSAVTQAAARAALRHA---DEL-LASVAALRAERDRVVAWLRELGLRVA 303 (368)
T ss_pred hhccchhhhhhhhC-CHHHHHHHHhcCCCCCCCHHHHHHHHHHhhCH---HHH-HHHHHHHHHHHHHHHHHHHHCCCEeC
Confidence 47899999999999 99999999887766789999999999999875 333 34456688899999999999999999
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
+|+++|++|.+++ ++..+++.|++ +||.|.++ +. ++++||+++ +.++++.+++.|.+++..
T Consensus 304 ~~~~~~~~~~~~~---------~~~~~~~~l~~-~Gv~v~~~---~~--~~~iRi~~~--~~~~~~~~~~~l~~~~~~ 364 (368)
T PRK03317 304 PSDANFVLFGRFA---------DRHAVWQGLLD-RGVLIRDV---GI--PGWLRVTIG--TPEENDAFLAALAEVLAT 364 (368)
T ss_pred CCCCcEEEEeccC---------CHHHHHHHHHH-CCEEEEeC---CC--CCeEEEecC--CHHHHHHHHHHHHHHHHH
Confidence 9999999997764 45788888876 89999874 22 679999998 557888888888887753
No 103
>PRK03321 putative aminotransferase; Provisional
Probab=99.78 E-value=5.1e-18 Score=129.13 Aligned_cols=134 Identities=16% Similarity=0.192 Sum_probs=106.7
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
+||+||+|+||+++ |+++++.+.+....+++|.+.|.++..+|... +.+.+..++. .++++.+.+.|++.|+.+.
T Consensus 217 ~~g~~GlRiG~~v~-~~~~~~~~~~~~~~~~~s~~~q~~a~~~l~~~---~~~~~~~~~~-~~~r~~~~~~L~~~~~~~~ 291 (352)
T PRK03321 217 AYGLAGLRVGYAVG-HPEVIAALRKVAVPFSVNSLAQAAAIASLAAE---DELLERVDAV-VAERDRVRAALRAAGWTVP 291 (352)
T ss_pred HhhhHHHhhhhhcC-CHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCH---HHHHHHHHHH-HHHHHHHHHHHHHCCCccC
Confidence 47899999999999 89999999887666889999999888888764 3444444444 4556778899988887765
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
+ .+|+|+|++++. ++.++++.|.+ +||.|.| |+ ++++||+++ ..++++++++.|.++++
T Consensus 292 ~-~~g~~i~i~l~~--------~~~~~~~~l~~-~gI~v~~---~~---~~~iRi~~~--~~~~~~~~~~al~~~~~ 350 (352)
T PRK03321 292 P-SQANFVWLPLGE--------RTADFAAAAAE-AGVVVRP---FA---GEGVRVTIG--APEENDAFLRAARAWRA 350 (352)
T ss_pred C-CCCCEEEEeCCC--------CHHHHHHHHHH-CCEEEEc---cC---CCcEEEeeC--CHHHHHHHHHHHHHHhc
Confidence 4 467899999863 56789998865 9999987 43 356999997 66889999999988764
No 104
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=99.77 E-value=1.3e-17 Score=126.44 Aligned_cols=131 Identities=13% Similarity=0.176 Sum_probs=101.9
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
+||+||+|+||+++ |+++++.+.+....+++|.+.|.++..++++.+ +..+.++.+.++++.+.+.|.+. .
T Consensus 205 ~~~l~GlRiG~iv~-~~~~i~~~~~~~~~~~~~~~~q~~~~~~l~~~~----~~~~~~~~~~~~r~~l~~~L~~~----~ 275 (337)
T PRK03967 205 AFGLAGIRAGYAIA-NEEIIDALYRIKPPFSLNILTMKIVRLALDHYD----LIEERIDYIIKERERVRRELGEY----A 275 (337)
T ss_pred hhcchhhhheeeec-CHHHHHHHHhhcCCCCCCHHHHHHHHHHHhCHH----HHHHHHHHHHHHHHHHHHHhccC----c
Confidence 48999999999999 899999999988778899999999999998752 34444555566777888888764 3
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHh
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~ 159 (163)
.|.+++|+|++++ +++.|++ +||.|.++... .++++||+++ ..++.++.++.|.++.+.+
T Consensus 276 ~~~~~~~~~~~~~-------------~~~~l~~-~gi~v~~~~~~---~~~~~Ri~~~--~~~~~~~l~~~l~~~~~~~ 335 (337)
T PRK03967 276 YPSDANFLLLKLD-------------AYDYLLE-NGIVVRKLSGR---LEGHIRVTVG--KREENDEFIKALKEIKEGY 335 (337)
T ss_pred CCCCCcEEEEhHH-------------HHHHHHH-CCEEEEeCCCC---CCCeEEEecC--CHHHHHHHHHHHHHHHHhc
Confidence 4688999998653 4567776 89999986532 2679999998 4466677777777776654
No 105
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=99.76 E-value=4.3e-17 Score=123.79 Aligned_cols=135 Identities=11% Similarity=0.151 Sum_probs=106.3
Q ss_pred CCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 3 SLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
++||+|+||+++ ++++++.+.+...+ ++++++.|.++..+|+.. . .+..++.++++.+++.+.++. +.+.
T Consensus 205 alaG~r~G~v~~-~~~li~~l~~~~~~~~~s~~~~~~~aa~~aL~~~---~--~~~~~~~l~~r~~~~~~~l~~--~~~~ 276 (346)
T TIGR03576 205 LMDGPRGGLLAG-RKELVDKIKSVGEQFGLEAQAPLLAAVVRALEEF---E--LSRIRDAFKRKEEVYLRLFDK--LNVE 276 (346)
T ss_pred hccccceEEEEe-CHHHHHHHHHhhcCcccCccHHHHHHHHHHHhhc---c--HHHHHHHHHHHHHHHHHHHHh--CCCC
Confidence 589999999999 99999999998874 357888999999988753 2 256688999999999888884 4555
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChh---HHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEK---DIHVVMERIRRI 155 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~---~l~~~~~~l~~~ 155 (163)
++.++ |+|++++.. ++.+++..+++++||.|+||+.|. ..++|+||+++. +++ +++..++.|++.
T Consensus 277 ~~~~~-f~~~~~~~~-------~~~~~~~~ll~~~gV~v~~~~~f~-~~~~~vRis~~~-~~~~~~~~~~~~~al~~~ 344 (346)
T TIGR03576 277 RTPTG-FVIKGVEEE-------KLIEIGLDLLRNYGIITITAVGMP-GASKTLRFDLAA-KDAERIGDDYLVEAVKDS 344 (346)
T ss_pred cCCCe-EEEEeCCCC-------CHHHHHHHHHHhCCEEEeCCcccC-CCCCeEEEEEec-ChHHhcCHHHHHHHHHhc
Confidence 55555 799999742 356777788888999999999884 237899999997 554 678888777654
No 106
>PRK08354 putative aminotransferase; Provisional
Probab=99.73 E-value=3.2e-16 Score=117.52 Aligned_cols=126 Identities=18% Similarity=0.280 Sum_probs=91.4
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
+||+||+|+||+++ +++.+.....++..+.+.|.++..++++. .+++.+.++.+.++++.+.+.+ ..
T Consensus 183 ~~~l~GlRiG~~v~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~l------~~ 249 (311)
T PRK08354 183 SYGLPGIRVGYVKG----FEEAFRSVRMPWSIGSTGYAFLEFLIEDD---FEHLRKTMPLIWREKERFEKAL------YV 249 (311)
T ss_pred hcCCccceeeeeee----hHHHHHHcCCCccCCHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHhc------CC
Confidence 48999999999999 45666666667778888888888887743 2556666777777776665544 23
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~ 154 (163)
+|+++|++ ++++ ++.++++.|.+ +||.|.||+.|+. ++++||+++. .++.+..++.|++
T Consensus 250 ~~~~~~~~-~~~~---------~~~~~~~~l~~-~gv~v~~g~~f~~--~~~iRi~~~~--~~~~~~l~~al~~ 308 (311)
T PRK08354 250 KSDANFFI-KDVG---------DAEKFVEFLKR-NGILVRDCTSFGL--PGYIRFSVRD--REENEKLIRALRE 308 (311)
T ss_pred CCCCcEEE-EECC---------CHHHHHHHHHH-CCeEEEecccCCC--CCeEEEEeCC--HHHHHHHHHHHHH
Confidence 57777766 5664 45788888865 8999999999964 6899999995 3444444444443
No 107
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=99.66 E-value=4.3e-15 Score=111.21 Aligned_cols=145 Identities=17% Similarity=0.203 Sum_probs=109.2
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChH-HHHHHHHHHHHHHHHHHHHHHHHhhhc-C---
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTK-FVQKFININRERLRRLYVKFVAGLRQL-G--- 76 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~-g--- 76 (163)
.||-+|+|+.+ +++-++.+.+.... ++++.++|.....+|.+.+ -+++||++.++.++-+.+.+.+.|.+. |
T Consensus 257 f~GaGva~~aa-S~~Nl~~~~~~~~~~tIgpdKvNQLRHvrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~ 335 (425)
T PF12897_consen 257 FPGAGVAFFAA-SEANLAWIKKHLSVQTIGPDKVNQLRHVRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGL 335 (425)
T ss_dssp -TTSS-EEEEE--HHHHHHHHHHHHHH-S---HHHHHHHHHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGG
T ss_pred cCCcceeeeec-CHHHHHHHHHHhcCceeCccHHHHHHHHHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCC
Confidence 58999999999 89888988888773 7899999999999999976 679999999999999999999998775 4
Q ss_pred --CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcC-CCCCCCC---CCceEEEEEecCChhHHHHHHH
Q 042816 77 --IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTP-GSSCHCI---EPGWFSFSFTLLTEKDIHVVME 150 (163)
Q Consensus 77 --~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~p-g~~f~~~---~~~~iRi~~~~~~~~~l~~~~~ 150 (163)
.+|..|+||||+++++.++ .+.+.++ |.++.||.++| |..|... .+..|||+.+.++.++++.+++
T Consensus 336 ~ia~Wt~P~GGYFIsld~~~G-------~AkrvV~-lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P~leel~~Am~ 407 (425)
T PF12897_consen 336 GIASWTKPKGGYFISLDVLDG-------TAKRVVE-LAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYPSLEELETAMD 407 (425)
T ss_dssp TSEEE---SBSS-EEEEESTT--------HHHHHH-HHHHTTEE---TTTTSGGG--TTS-EEEE--SSS-HHHHHHHHH
T ss_pred CeeEecCCCCceEEEEecCCC-------hHHHHHH-HHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCCCHHHHHHHHH
Confidence 6999999999999999874 5677777 45669999999 8888532 3679999999989999999999
Q ss_pred HHHHHHH
Q 042816 151 RIRRISQ 157 (163)
Q Consensus 151 ~l~~~~~ 157 (163)
.+.-++.
T Consensus 408 ~~~~cv~ 414 (425)
T PF12897_consen 408 VFATCVK 414 (425)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9986553
No 108
>PLN02368 alanine transaminase
Probab=99.63 E-value=2.4e-15 Score=116.48 Aligned_cols=94 Identities=17% Similarity=0.168 Sum_probs=78.1
Q ss_pred CC-CCCceeEEEEEe--cCHHHHHHHHHhhc-ccCCChHHHHHHHHhcCChH-----H--HHHHHHHHHHHHHHHHHHHH
Q 042816 1 DL-SLPGFRISVIYS--YNNSVLAAAKKLAR-FSSVSAPSQNLLVSMLSDTK-----F--VQKFININRERLRRLYVKFV 69 (163)
Q Consensus 1 ~~-~~~G~RiG~~i~--~~~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~-----~--~~~~~~~~~~~~~~~~~~l~ 69 (163)
+| |+||||+||+++ .|+++++.+.+... .+++|.++|.++..+|++++ + ..++++++++.|++|++++.
T Consensus 292 ~~~~~~GlRiGy~i~~~~~~~li~~~~~~~~~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~ 371 (407)
T PLN02368 292 GYWGECGQRGGYFEMTNIPPKTVEEIYKVASIALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMT 371 (407)
T ss_pred ccccCCccceEEEEEeCCCHHHHHHHHHHhcccCCCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36 899999999994 28899999988754 47899999999999998541 1 13445678999999999999
Q ss_pred HHhhhc-CCccccCCceeEEEeecCC
Q 042816 70 AGLRQL-GIECAKSNGGFYCWADMSG 94 (163)
Q Consensus 70 ~~l~~~-g~~~~~~~~g~~~~~~~~~ 94 (163)
+.|+++ |+.+.+|+||||+|++++-
T Consensus 372 ~~L~~~~g~~~~~P~Gafy~~~~i~l 397 (407)
T PLN02368 372 DGFNSCKNVVCNFTEGAMYSFPQIKL 397 (407)
T ss_pred HHHhCCCCeEeCCCCeeeEeccCCCC
Confidence 999998 9999999999999987653
No 109
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=99.63 E-value=4.1e-14 Score=106.85 Aligned_cols=140 Identities=31% Similarity=0.491 Sum_probs=114.6
Q ss_pred CCCCceeEEEEEecCH-HHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 2 LSLPGFRISVIYSYNN-SVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~-~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
++.+|+|+||+++ ++ ++.+.+...... ++++...|.++..+++.. .+++++.++.+.++++++.+.|++++..
T Consensus 206 ~~~~g~~~G~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 281 (350)
T cd00609 206 FGLPGLRIGYLIA-PPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDG---EEHLEELRERYRRRRDALLEALKELGPL 281 (350)
T ss_pred cCCcccceEEEec-CHHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 5679999999999 67 899998887775 678899999999999886 3678899999999999999999998543
Q ss_pred c-ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHH
Q 042816 79 C-AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIR 153 (163)
Q Consensus 79 ~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~ 153 (163)
. ..+.+|+++|+.++.. ...+++.++++++||.+.++..|....+.++||+++.. .++++.+++.|+
T Consensus 282 ~~~~~~~g~~~~~~~~~~-------~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~-~~~i~~~~~al~ 349 (350)
T cd00609 282 VVVKPSGGFFLWLDLPEG-------DDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP-EEELEEALERLA 349 (350)
T ss_pred cccCCCccEEEEEecCCC-------ChHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCC-HHHHHHHHHHhh
Confidence 3 6778999999999863 23444455556689999999888754578999999984 889999888875
No 110
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=99.55 E-value=1.8e-13 Score=105.69 Aligned_cols=139 Identities=11% Similarity=0.101 Sum_probs=97.9
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cc
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG-IE 78 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~ 78 (163)
++ +|+|+||+++ ++++++.+..... .++.+++.|.++...++..+. +++.++.++.....++.+.+.+..++ +.
T Consensus 253 ~~-~G~rig~~~~-~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 329 (396)
T PRK02627 253 LG-GGVPIGAVLA-KEKVADVFTPGDHGSTFGGNPLACAAALAVIEIIEE-EGLLENAAEVGEYLRAKLRELLEKYPGIK 329 (396)
T ss_pred hh-CCcccEEEEE-cHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence 56 8999999999 8899888865333 367899999998888874322 23344444444444444444444332 22
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~~~l~~~~~ 157 (163)
.. +..|.++|++++. ++.++++.|++ +||.+.|+. .+++|++++ .++++++++++++|.++++
T Consensus 330 ~~-~~~g~~~~i~~~~--------~~~~~~~~l~~-~Gv~v~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~l~ 393 (396)
T PRK02627 330 EV-RGLGLMIGIELDR--------PAAEIVKKALE-KGLLINVTG------DNVLRLLPPLIISKEEIDEAVDRLEEVLK 393 (396)
T ss_pred ee-ccCcEEEEEEecC--------cHHHHHHHHHH-CCeEEeecC------CCEEEEECCcccCHHHHHHHHHHHHHHHH
Confidence 22 2357889999843 57889999987 699999863 478999875 3588999999999999886
Q ss_pred Hh
Q 042816 158 TC 159 (163)
Q Consensus 158 ~~ 159 (163)
++
T Consensus 394 ~~ 395 (396)
T PRK02627 394 EL 395 (396)
T ss_pred hh
Confidence 53
No 111
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=99.55 E-value=1.6e-13 Score=107.01 Aligned_cols=147 Identities=8% Similarity=-0.025 Sum_probs=108.4
Q ss_pred CceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-cccc
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGI-ECAK 81 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~-~~~~ 81 (163)
+|+|+||+++ ++++++.+...... ++.+++.|.++..+|+.... ++++++.++..++.++.+.+.+...+. ....
T Consensus 272 ~G~rig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~ 349 (425)
T PRK08088 272 GGFPLAGVTG-RAEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQ-ENLLQKANALGEKLKDGLLAIAEKHPEIGDVR 349 (425)
T ss_pred CCCcceeeEe-cHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 8999999999 99999988665442 56899999999999987654 677778887777777766666555532 2222
Q ss_pred CCceeEEEeecCCccc--CCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHHHHHHHHHHH
Q 042816 82 SNGGFYCWADMSGLIS--SYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 82 ~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~~~l~~~~~~ 158 (163)
+. |+++|+.+.+... .++......+.+.+.+ +||.+.|+..| ++.+|++++ .++++++++++++|.+++.+
T Consensus 350 g~-G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~-~Gv~~~~~~~~----~~~iRl~~~~~~t~~ei~~~i~~l~~~l~~ 423 (425)
T PRK08088 350 GL-GAMIAIELFEDGDHSKPNAKLTAQIVARARD-KGLILLSCGPY----YNVLRILVPLTIEDAQIRQGLEIIAQCFDE 423 (425)
T ss_pred cc-ceEEEEEEecCCCCCCCCHHHHHHHHHHHHh-CCCEEecCCCC----CCEEEEECCCCcCHHHHHHHHHHHHHHHHh
Confidence 22 8889999843210 0111246788888876 89999886444 378999998 45789999999999999876
Q ss_pred h
Q 042816 159 C 159 (163)
Q Consensus 159 ~ 159 (163)
.
T Consensus 424 ~ 424 (425)
T PRK08088 424 A 424 (425)
T ss_pred h
Confidence 4
No 112
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=99.50 E-value=8.7e-13 Score=101.29 Aligned_cols=132 Identities=15% Similarity=0.118 Sum_probs=95.4
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc----
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL---- 75 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---- 75 (163)
|+ +|+|+||+++ ++++++.+..... .++.+++.|.++..+|+.- .. ...++.++++++.+.+.|++.
T Consensus 241 ~~-~G~riG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~---~~--~~~~~~~~~~~~~~~~~l~~~~~~~ 313 (379)
T TIGR00707 241 LG-GGVPIGATLA-KEEVAEAFTPGDHGSTFGGNPLACAAALAVLEVI---EK--ERLLENVKEKGDYFKERLEELGKNY 313 (379)
T ss_pred cc-CCcccEEEEE-cHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHH---Hh--hhHHHHHHHHHHHHHHHHHHHHhhC
Confidence 67 9999999999 8999999876433 3578899999888777532 11 234455666666666666554
Q ss_pred CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHH
Q 042816 76 GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRR 154 (163)
Q Consensus 76 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~ 154 (163)
++... +..|.++|++++. +..++.+.|.+ +||.+.|+. ++++||+++. .+++++++++++|.+
T Consensus 314 ~~~~~-~~~g~~~~~~~~~--------~~~~~~~~l~~-~Gv~v~~~~------~~~lRi~~~~~~t~~~i~~~~~~l~~ 377 (379)
T TIGR00707 314 PNKEV-RGKGLMLGIELEA--------PCKDIVKKALE-KGLLVNCAG------PKVLRFLPPLIITKEEIDEAVSALEE 377 (379)
T ss_pred CCCcc-ccCceEEEEEecC--------cHHHHHHHHHH-CCcEEeeCC------CCEEEEECCCcCCHHHHHHHHHHHHH
Confidence 22212 2467788888874 45788888776 899999852 4789999753 588999999999987
Q ss_pred HH
Q 042816 155 IS 156 (163)
Q Consensus 155 ~~ 156 (163)
++
T Consensus 378 ~~ 379 (379)
T TIGR00707 378 AI 379 (379)
T ss_pred hC
Confidence 53
No 113
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=99.49 E-value=9e-13 Score=102.23 Aligned_cols=140 Identities=15% Similarity=0.176 Sum_probs=104.4
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG--- 76 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g--- 76 (163)
++ +|+|+||+++ ++++++.+..... .++.+++.|.++...|+.- . ....++.++++.+++.+.|++++
T Consensus 255 l~-~G~rig~vv~-~~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~---~--~~~~~~~~~~~~~~l~~~L~~~~~~~ 327 (403)
T PRK05093 255 LG-GGFPIGAMLT-TAEIASHFKVGTHGSTYGGNPLACAVAEAVFDII---N--TPEVLEGVKARRQRFVDGLQKINQKY 327 (403)
T ss_pred cc-CCcceEEEEE-cHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH---h--hccHHHHHHHHHHHHHHHHHHHHhhC
Confidence 56 8999999999 8999888875433 2567899998888866421 1 12445788888999999888763
Q ss_pred -CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecC-ChhHHHHHHHHHHH
Q 042816 77 -IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLL-TEKDIHVVMERIRR 154 (163)
Q Consensus 77 -~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~-~~~~l~~~~~~l~~ 154 (163)
+....+.+|+++|+.++... ..++.++++.|++ +||.+.|+ +++++|++++.. +++++++++++|.+
T Consensus 328 ~~~~~~~~~G~~~~~~l~~~~----~~~~~~~~~~l~~-~Gv~v~~~------g~~~lRl~~~~~~~~~~i~~~~~~l~~ 396 (403)
T PRK05093 328 GVFSEIRGMGLLIGAELKPQY----KGRARDFLNAAAE-EGVMVLVA------GPDVLRFAPSLVIEEADIDEGLARFEK 396 (403)
T ss_pred CCeEeEeeCceEEEEEecCcc----hhHHHHHHHHHHH-CCeEEecC------CCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 22344567999999986421 0146789998887 89999874 257999976553 88999999999999
Q ss_pred HHHHh
Q 042816 155 ISQTC 159 (163)
Q Consensus 155 ~~~~~ 159 (163)
++.++
T Consensus 397 ~l~~~ 401 (403)
T PRK05093 397 AVAKV 401 (403)
T ss_pred HHHHh
Confidence 88754
No 114
>PLN02483 serine palmitoyltransferase
Probab=99.49 E-value=2.9e-12 Score=101.60 Aligned_cols=142 Identities=14% Similarity=0.125 Sum_probs=102.7
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc---cc-CCC-hHHHHHHHHhc---C--ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR---FS-SVS-APSQNLLVSML---S--DTKFVQKFININRERLRRLYVKFVAG 71 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~---~~-~~s-~~~q~~~~~~l---~--~~~~~~~~~~~~~~~~~~~~~~l~~~ 71 (163)
||++| ||+++ ++++++.+..... +. +++ ...|.+ ...| . ++ .++..+.++.++++++++.+.
T Consensus 313 ~g~~G---G~i~~-~~~li~~l~~~~~~~~~~~~~~p~~~~~~-~aaL~~l~~~~g---~~~~~~~~~~l~~~~~~l~~~ 384 (489)
T PLN02483 313 FGSCG---GYIAG-SKELIQYLKRTCPAHLYATSMSPPAVQQV-ISAIKVILGEDG---TNRGAQKLAQIRENSNFFRSE 384 (489)
T ss_pred cccCc---eEEEc-CHHHHHHHHHhCccccccCCcCHHHHHHH-HHHHHHHHhCcc---ccchHHHHHHHHHHHHHHHHH
Confidence 56666 99999 9999999987643 22 223 334433 2323 2 22 133455678899999999999
Q ss_pred hhhcCCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC--CCCceEEEEEec-CChhHHHHH
Q 042816 72 LRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC--IEPGWFSFSFTL-LTEKDIHVV 148 (163)
Q Consensus 72 l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~--~~~~~iRi~~~~-~~~~~l~~~ 148 (163)
|+++|+.+..+.+++.+|+-+.... +..++++.|++ +||.|.| ..|.. ...+++||+++. +++|+++++
T Consensus 385 L~~~G~~v~~~~~sp~~~l~l~~~~------~~~~~~~~Ll~-~GI~v~~-~~fp~~p~~~~~vRi~isa~~t~edId~~ 456 (489)
T PLN02483 385 LQKMGFEVLGDNDSPVMPIMLYNPA------KIPAFSRECLK-QNVAVVV-VGFPATPLLLARARICISASHSREDLIKA 456 (489)
T ss_pred HHHCCCcccCCCCCCEEEEEECCHH------HHHHHHHHHHH-CCcEEee-eCCCCCCCCCceEEEEeCCCCCHHHHHHH
Confidence 9999988887777777777655321 55689999987 7999997 55532 235799999975 588999999
Q ss_pred HHHHHHHHHHh
Q 042816 149 MERIRRISQTC 159 (163)
Q Consensus 149 ~~~l~~~~~~~ 159 (163)
+++|.++.+.+
T Consensus 457 l~~L~~~~~~~ 467 (489)
T PLN02483 457 LEVISEVGDLV 467 (489)
T ss_pred HHHHHHHHHHh
Confidence 99999987654
No 115
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=99.48 E-value=2.5e-12 Score=99.18 Aligned_cols=142 Identities=14% Similarity=0.087 Sum_probs=101.3
Q ss_pred CceeEEEEEecCHHHHHHHHHhhcc---cCC-ChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLARF---SSV-SAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~~---~~~-s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
+|+|+||+++ ++++++.+...... .++ ++..+.++...++.- . ..++.++.++++++++.+.|++.|++..
T Consensus 247 ~g~r~G~v~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~---~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 321 (397)
T PRK06939 247 GGASGGYTAG-RKEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELL---E-ESDELRDRLWENARYFREGMTAAGFTLG 321 (397)
T ss_pred CccCceEEEe-CHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHH---h-cCHHHHHHHHHHHHHHHHHHHHcCCCcC
Confidence 4679999999 89999998875442 222 233344444444321 1 1256788899999999999998888877
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC--CCCceEEEEEec-CChhHHHHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC--IEPGWFSFSFTL-LTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~--~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~ 157 (163)
++.++++.+ .++.. .++.++++.|++ +||.+.++. |.. .+.+++|++++. ++++++++++++|.++++
T Consensus 322 ~~~~~~~~~-~~~~~------~~~~~~~~~L~~-~gI~v~~~~-~~~~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~ 392 (397)
T PRK06939 322 PGEHPIIPV-MLGDA------KLAQEFADRLLE-EGVYVIGFS-FPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGK 392 (397)
T ss_pred CCCCCEEEE-EECCH------HHHHHHHHHHHH-CCceEeeeC-CCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 777776544 34432 257889999987 699999754 432 235799999864 588999999999999987
Q ss_pred Hhh
Q 042816 158 TCK 160 (163)
Q Consensus 158 ~~~ 160 (163)
+..
T Consensus 393 ~~~ 395 (397)
T PRK06939 393 ELG 395 (397)
T ss_pred HhC
Confidence 653
No 116
>PLN02822 serine palmitoyltransferase
Probab=99.48 E-value=1.9e-12 Score=102.42 Aligned_cols=150 Identities=14% Similarity=0.110 Sum_probs=110.7
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCC--ChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-C
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSV--SAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-G 76 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~--s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g 76 (163)
||++| ||+++ ++++++.+..... .++. +++.|.++..+|+.. +. ....++.++++.+++.+.|++. |
T Consensus 318 lg~~G---G~i~g-~~~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l---~~-~~~~~~~l~~~~~~l~~~L~~~~g 389 (481)
T PLN02822 318 LATEG---GFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL---ED-NPSVLAKLKENIALLHKGLSDIPG 389 (481)
T ss_pred hhhCC---eEEEc-CHHHHHHHHhcCCceeeccccCHHHHHHHHHHHHHH---Hh-CHHHHHHHHHHHHHHHHHHHhcCC
Confidence 56778 99999 9999998876544 2343 355677777777432 22 2578889999999999999997 8
Q ss_pred CccccCCceeEEEeecCCcccC--CChhhHHHHHHHHHHhcCeEEcCC--CCCCCC-CCceEEEEEec-CChhHHHHHHH
Q 042816 77 IECAKSNGGFYCWADMSGLISS--YSEKGELELWDKLLNVAKVNVTPG--SSCHCI-EPGWFSFSFTL-LTEKDIHVVME 150 (163)
Q Consensus 77 ~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~gi~v~pg--~~f~~~-~~~~iRi~~~~-~~~~~l~~~~~ 150 (163)
+.+..+.+++++++.+++.... .+.....+++++|++++||.+.|+ ..|... .+.++|++++. +++++++++++
T Consensus 390 ~~~~~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~ 469 (481)
T PLN02822 390 LSIGSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASE 469 (481)
T ss_pred cccCCCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHHHHH
Confidence 9888888999999999642100 011124689999986689999976 445422 25689999864 48899999999
Q ss_pred HHHHHHHHh
Q 042816 151 RIRRISQTC 159 (163)
Q Consensus 151 ~l~~~~~~~ 159 (163)
+|++++.+.
T Consensus 470 ~l~~~~~~~ 478 (481)
T PLN02822 470 SLKRVAASV 478 (481)
T ss_pred HHHHHHHHH
Confidence 999988764
No 117
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=99.46 E-value=2.5e-12 Score=99.30 Aligned_cols=136 Identities=13% Similarity=0.120 Sum_probs=98.2
Q ss_pred CceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQLGIEC 79 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 79 (163)
+|+|+||+++ ++++++.+...... ++.+++.|.++...|+ ++++ .++.+++.+.++++.+.+.+.+... +..
T Consensus 248 ~G~~ig~~~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~-~~~~~~~~~~l~~~l~~l~~~~~~~-~~~ 324 (389)
T PRK01278 248 GGFPLGACLA-TEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGF-LDNVQRMGLYLKQKLEGLVDRFPDV-IEE 324 (389)
T ss_pred CCcceEEEEE-cHHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHhhCCCc-eee
Confidence 7999999999 88888887655442 4688899988865554 3333 4666777777777776654332211 222
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~ 158 (163)
..+ .|+++|++++. ++.++++.|++ +||.+.|+. ++++||+++. ++++++++++++|.+++.+
T Consensus 325 v~g-~G~~~~i~~~~--------~~~~~~~~l~~-~GV~~~p~~------~~~lR~~p~~~~~~~~i~~~l~~l~~~l~~ 388 (389)
T PRK01278 325 VRG-KGLLLGLKCVV--------PNRDLVQALRD-EGLLTVGAG------DNVVRLLPPLIITEEEIDEALERLERAAES 388 (389)
T ss_pred Eec-ccEEEEEEEec--------CHHHHHHHHHH-CCeEEeecC------CCEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence 333 67788888753 56889999987 699999872 5799999753 5889999999999998865
Q ss_pred h
Q 042816 159 C 159 (163)
Q Consensus 159 ~ 159 (163)
+
T Consensus 389 ~ 389 (389)
T PRK01278 389 L 389 (389)
T ss_pred C
Confidence 3
No 118
>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]
Probab=99.46 E-value=3.1e-12 Score=91.55 Aligned_cols=144 Identities=15% Similarity=0.163 Sum_probs=108.2
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCc-
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIE- 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~- 78 (163)
+||++|+|+||..+ +.++++.+.+.+.+++.|.+...++..++++.. -+.++..++.+-+.+..+.+.|... ++.
T Consensus 228 sfGLAGiRvG~~~~-~~~ia~iln~~KaPYNiS~~~s~~AL~Als~~n--~kkme~~rdaiv~er~RL~keLt~v~~~~~ 304 (375)
T KOG0633|consen 228 SFGLAGIRVGYGAF-PLSIAEILNRAKAPYNISVAGSVAALAALSDSN--GKKMEDVRDAIVRERERLFKELTEVPFLND 304 (375)
T ss_pred hcCcceeEeecccc-cHHHHHHHHhccCCccccchhHHHHHHhcCccc--chHHHHHHHHHHHHHHHHHHHhhcCccccC
Confidence 48999999999999 999999999999999999999999999998643 3678899999999999999999998 544
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcC-CCCCCCCCCceEEEEEecCChhHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTP-GSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~p-g~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~ 155 (163)
+..+.-+-|+.+++... .+. -+..+..+++.+.||.|+- |+.-+ .++++||++++ +|+....++-|+++
T Consensus 305 ~~gg~daNFiLi~v~~~---~n~-~akkly~q~at~~gVvVRfrgse~~--c~G~lRitvGt--~EentvL~k~~K~~ 374 (375)
T KOG0633|consen 305 YPGGSDANFILIEVTGG---DNG-MAKKLYKQDATKMGVVVRFRGSEEG--CKGYLRITVGT--PEENTVLMKCLKQF 374 (375)
T ss_pred CCCcccccEEEEEEcCC---CcH-HHHHHHHHHHHhcceEEEEcCCccc--cceeEEEEcCC--cccchHHHHHHHhh
Confidence 33344445677777642 121 2345555566668999973 33222 38999999995 35556666666654
No 119
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=99.44 E-value=3.4e-12 Score=98.13 Aligned_cols=133 Identities=11% Similarity=0.113 Sum_probs=93.9
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CC
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL--GI 77 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g~ 77 (163)
++ +|+|+||+++ ++++++.+..... .++.+++.|.++..+|+.... + ...+.+.++.+++.+.|++. ++
T Consensus 238 l~-~G~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~----~~~~~~~~~~~~l~~~L~~~~~~~ 310 (377)
T PRK02936 238 LG-NGIPVGAMIG-KKELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQ-P----SFLEEVQEKGEYFLQKLQEELEHL 310 (377)
T ss_pred cc-CCCccEEEEE-cHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHh-c----cHHHHHHHHHHHHHHHHHHHHhhC
Confidence 56 8999999999 8999888865433 246899999999888865321 2 33345556666666666553 22
Q ss_pred ccc--cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEE-ecCChhHHHHHHHHHHH
Q 042816 78 ECA--KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSF-TLLTEKDIHVVMERIRR 154 (163)
Q Consensus 78 ~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~-~~~~~~~l~~~~~~l~~ 154 (163)
... ....|+++|++++. +...+.+.|.+ +||.+.|+ +.+++||++ ..++++++++++++|.+
T Consensus 311 ~~~~~v~~~g~~~~i~~~~--------~~~~~~~~l~~-~gv~v~~~------g~~~lRi~p~~~~~~~~i~~~i~~l~~ 375 (377)
T PRK02936 311 ECVKNIRGKGLMIGIECTE--------EVAPVIEQLRE-EGLLVLSA------GPNVIRLLPPLVVTKEELDQAVYLLKK 375 (377)
T ss_pred CcEEeEeecceEEEEEecc--------hHHHHHHHHHH-CCeEEecC------CCCEEEEECCcccCHHHHHHHHHHHHH
Confidence 221 12356899999975 35677777765 89999884 257999996 33589999999999987
Q ss_pred HH
Q 042816 155 IS 156 (163)
Q Consensus 155 ~~ 156 (163)
++
T Consensus 376 ~~ 377 (377)
T PRK02936 376 VL 377 (377)
T ss_pred hC
Confidence 53
No 120
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=99.44 E-value=3.8e-12 Score=97.86 Aligned_cols=133 Identities=11% Similarity=0.047 Sum_probs=104.5
Q ss_pred CceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-Ccccc
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG-IECAK 81 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~ 81 (163)
+|+|+||+++ ++++.+.+..... .++.+++.|.++..+|+.... +++.++.++..+..++.+.+.+.+++ +...
T Consensus 238 ~G~~ig~~~~-~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~- 314 (375)
T PRK04260 238 NGVPVGAMLA-KSSLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLT-AGFLEQALENGNYLQEQLQKALQDKETVTTV- 314 (375)
T ss_pred CCcceEEEEE-cHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHhhCCCeeEE-
Confidence 6899999999 8999888865333 356789999999999876543 56778888888888888888887764 3333
Q ss_pred CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEE-ecCChhHHHHHHHHHHHH
Q 042816 82 SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSF-TLLTEKDIHVVMERIRRI 155 (163)
Q Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~-~~~~~~~l~~~~~~l~~~ 155 (163)
+..|+++|++++. +...+.+.+.+ +||.+.|+ +.+.+|++. ..++++++++++++|.++
T Consensus 315 ~~~g~~~~~~~~~--------~~~~~~~~l~~-~Gi~v~~~------~~~~lR~~~~~~~t~~~i~~~l~~l~~~ 374 (375)
T PRK04260 315 RGLGYMIGIETTA--------DLSQLVEAARD-KGLIVLTA------GTNVIRLLPPLTLTKEEIEQGIAILSEV 374 (375)
T ss_pred eccceEEEEEecC--------cHHHHHHHHHh-CCCEEecC------CCCEEEEcCCCccCHHHHHHHHHHHHHh
Confidence 3489999999853 56788888876 89999874 247899999 557889999999999765
No 121
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=99.43 E-value=4.7e-12 Score=98.43 Aligned_cols=143 Identities=12% Similarity=0.078 Sum_probs=105.4
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcc----cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARF----SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGI 77 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~----~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 77 (163)
||++| ||+++ ++++++.+++.... .+.+++.|.++..+|+.. +.....++.+.++++++.+.|++.|+
T Consensus 250 ~g~~G---G~~~~-~~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~----~~~~~~~~~~~~~~~~l~~~L~~~g~ 321 (410)
T PRK13392 250 FGCLG---GYIAA-SADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHL----KTSQTERDAHQDRVAALKAKLNANGI 321 (410)
T ss_pred hhccc---chhhc-CHHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 67777 99999 89999988877653 234556788787887653 22345668889999999999999899
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC-CCCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC-IEPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~-~~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
++.+++++++ .+.++.. .+..++++.|++++||.+.|+..... .+..++||++.. +++++++.+++.|.++
T Consensus 322 ~~~~~~~~~~-~i~~~~~------~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~~ 394 (410)
T PRK13392 322 PVMPSPSHIV-PVMVGDP------TLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVAI 394 (410)
T ss_pred CCCCCCCCEE-EEEeCCH------HHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 8888888765 2233321 14678999887668999998754332 235799999852 4889999999999988
Q ss_pred HHHh
Q 042816 156 SQTC 159 (163)
Q Consensus 156 ~~~~ 159 (163)
++++
T Consensus 395 ~~~~ 398 (410)
T PRK13392 395 WDRL 398 (410)
T ss_pred HHHc
Confidence 7654
No 122
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=99.43 E-value=5.8e-12 Score=95.81 Aligned_cols=135 Identities=16% Similarity=0.129 Sum_probs=97.9
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcc--c--CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARF--S--SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGI 77 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 77 (163)
||++| ||+++ ++++++.+...... . ++++..+.++..+++.. ...+..++.++++++++.+.|+++++
T Consensus 219 ~~~~g---G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~----~~~~~~~~~~~~~~~~l~~~L~~~~~ 290 (360)
T TIGR00858 219 LGSYG---AYVAG-SQALIDYLINRARTLIFSTALPPAVAAAALAALELI----QEEPWRREKLLALIARLRAGLEALGF 290 (360)
T ss_pred hhccC---cEEEc-CHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45555 99999 89999888655432 1 23444444555666432 22356789999999999999998887
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC-CCCceEEEEEec-CChhHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC-IEPGWFSFSFTL-LTEKDIHVVMERI 152 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~-~~~~~iRi~~~~-~~~~~l~~~~~~l 152 (163)
++.+ .++.++|+.++.. .++.++++.|++ +||.+.|+..+.. .+++++||++.. .+.++++.++++|
T Consensus 291 ~~~~-~~~~~~~~~~~~~------~~~~~~~~~l~~-~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~i~~~l~~l 359 (360)
T TIGR00858 291 TLMP-SCTPIVPVIIGDN------ASALALAEELQQ-QGIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLAEAL 359 (360)
T ss_pred ccCC-CCCCEEEEEeCCH------HHHHHHHHHHHH-CCeeEeeeCCCCCCCCCceEEEEEcCCCCHHHHHHHHHhh
Confidence 7764 4667889888753 267889999876 8999998766643 235799999984 4788999888876
No 123
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=99.40 E-value=1.2e-11 Score=95.79 Aligned_cols=147 Identities=11% Similarity=0.056 Sum_probs=99.9
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhcc--cCCChHH-HHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPS-QNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~-q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
++|.|.||++++++++++.+.+.... .+.+.+. +.++..++.... ..+.++.++.+.++++++.+.|++.|+++.
T Consensus 226 l~G~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 303 (402)
T cd00378 226 LRGPRGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKEAL--EPEFKAYAKQVVENAKALAEALKERGFKVV 303 (402)
T ss_pred CCCCCceEEEeccHHHHHHHHHHhCccccCCchHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHhCCCeEe
Confidence 58999999999444899998776653 2322222 333333333221 224567778899999999999999888775
Q ss_pred -cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCC----CCCCceEEEEEecC-----ChhHHHHHHH
Q 042816 81 -KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCH----CIEPGWFSFSFTLL-----TEKDIHVVME 150 (163)
Q Consensus 81 -~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~----~~~~~~iRi~~~~~-----~~~~l~~~~~ 150 (163)
.|.+++++|++++... .+...+.+. ++++||.+.++.... ...++++|+++... +.++++.+++
T Consensus 304 ~~~~~~~~v~v~~~~~~-----~~~~~~~~~-l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~~~ 377 (402)
T cd00378 304 SGGTDNHLVLVDLRPKG-----ITGKAAEDA-LEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIAD 377 (402)
T ss_pred ecCCCCeEEEEeCCccC-----CCHHHHHHH-HHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHHHH
Confidence 4678999999997421 134555654 456899998643212 11357899998653 4788999999
Q ss_pred HHHHHHHH
Q 042816 151 RIRRISQT 158 (163)
Q Consensus 151 ~l~~~~~~ 158 (163)
.|.+++.+
T Consensus 378 ~l~~~~~~ 385 (402)
T cd00378 378 FIARALKD 385 (402)
T ss_pred HHHHHHhc
Confidence 99987653
No 124
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=99.38 E-value=2.4e-11 Score=93.29 Aligned_cols=138 Identities=20% Similarity=0.218 Sum_probs=98.3
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc-c--cC-CChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR-F--SS-VSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGI 77 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~-~--~~-~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 77 (163)
||++| ||+++ ++++.+.+.+... + .+ .+++.+.++..+++.. +.. +..++.+.++++++.+.|++.|+
T Consensus 241 ~~~~G---g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~---~~~-~~~~~~~~~~~~~l~~~L~~~~~ 312 (385)
T PRK05958 241 LGSSG---AAVLG-SETLIDYLINRARPFIFTTALPPAQAAAARAALRIL---RRE-PERRERLAALIARLRAGLRALGF 312 (385)
T ss_pred cccCC---cEEEc-CHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHH---hcC-HHHHHHHHHHHHHHHHHHHHcCC
Confidence 45556 99999 8899888765543 2 22 3444444555666543 222 46678899999999999998888
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC-CCCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC-IEPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~-~~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
++.+|.++ ++|+.++.. .++.++++.|.+ +||.|.++..+.. .+++++||+++. .+++++++++++|.++
T Consensus 313 ~~~~~~~~-~~~~~~~~~------~~~~~~~~~l~~-~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~~~ 384 (385)
T PRK05958 313 QLMDSQSA-IQPLIVGDN------ERALALAAALQE-QGFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEA 384 (385)
T ss_pred CcCCCCCC-EEEEEeCCH------HHHHHHHHHHHH-CCceEecccCCCCCCCCceEEEEecCCCCHHHHHHHHHHHHhc
Confidence 88777665 567777642 267789999876 8999998654432 235799999973 4889999999999765
No 125
>PLN00144 acetylornithine transaminase
Probab=99.38 E-value=2.2e-11 Score=93.91 Aligned_cols=135 Identities=14% Similarity=0.083 Sum_probs=101.3
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHH---HhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-C
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLV---SMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG-I 77 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~ 77 (163)
.+|+|+||+++ ++++.+.+..... .++.+++.+.++. .+++++++ .++++++.+.+++ .+.+.+.++. +
T Consensus 239 ~~G~pig~v~~-~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~~-~~~~~~~g~~l~~---~l~~~~~~~~~~ 313 (382)
T PLN00144 239 AGGLPIGAVLV-TEKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPGF-LASVAKKGEYLRE---LLRRKLGGNPHV 313 (382)
T ss_pred cCCcceEEEEE-cHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhchH-HHHHHHHHHHHHH---HHHHHHhhCCCc
Confidence 36899999999 8999888764333 3578888898888 66676655 6777777777743 4445555552 2
Q ss_pred -ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 78 -ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 78 -~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
++. ..|+++|+++.. +...+++.+.+ +||.+.|+.. .+.+|++++. ++++++++++++|.++
T Consensus 314 ~~vr--g~G~~~~l~l~~--------~~~~~~~~~~~-~Gv~i~~~~~-----~~~lrl~p~~~~~~~~i~~~~~~l~~~ 377 (382)
T PLN00144 314 KEVR--GVGLLVGIQLDV--------PAGPLVDACRD-SGLLVLTAGK-----GDVVRLVPPLVISEAELEQAVEILADC 377 (382)
T ss_pred eeee--cCceEEEEEecC--------ccHHHHHHHHH-CCeEEeecCC-----CCEEEEeCCCccCHHHHHHHHHHHHHH
Confidence 333 389999999942 45678888876 9999998721 4789999987 7899999999999999
Q ss_pred HHHh
Q 042816 156 SQTC 159 (163)
Q Consensus 156 ~~~~ 159 (163)
+.++
T Consensus 378 l~~~ 381 (382)
T PLN00144 378 LPAL 381 (382)
T ss_pred HHhc
Confidence 8764
No 126
>PRK10534 L-threonine aldolase; Provisional
Probab=99.37 E-value=2.9e-11 Score=91.45 Aligned_cols=125 Identities=9% Similarity=0.088 Sum_probs=89.5
Q ss_pred eEE-EEEecCHHHHHHHHHhhcccC----CChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccC
Q 042816 8 RIS-VIYSYNNSVLAAAKKLARFSS----VSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKS 82 (163)
Q Consensus 8 RiG-~~i~~~~~~~~~~~~~~~~~~----~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ 82 (163)
++| |+++ ++++++.+.+....++ .+.+.|.++...|++. .++++ + ..++++++.+.|+++|+++.+|
T Consensus 202 ~~G~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~---~~~~~---~-~~~~r~~l~~~L~~~g~~~~~~ 273 (333)
T PRK10534 202 PVGSLLVG-NRDYIKRARRWRKMTGGGMRQAGILAAAGLYALKHN---VARLQ---E-DHDNAAWLAEQLREAGADVMRQ 273 (333)
T ss_pred cccceEEc-CHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhh---HHHHH---H-HHHHHHHHHHHHHhCCCccCCC
Confidence 478 6888 9999999988876432 3345676666666431 22222 2 3345788999999999998877
Q ss_pred CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHHHHHHHHHH
Q 042816 83 NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~~~l~~~~~ 157 (163)
+++|+|++++.. +..++.+.|. ++||.|.||. ++|++.. .++++++++++++|++++.
T Consensus 274 -~~nfv~~~~~~~-------~~~~~~~~l~-~~gi~v~~~~--------~~rl~~~~r~t~e~~~~~~~~l~~~~~ 332 (333)
T PRK10534 274 -DTNMLFVRVGEE-------QAAALGEYMR-ERNVLINASP--------IVRLVTHLDVSREQLAEVVAHWRAFLA 332 (333)
T ss_pred -CceEEEEECCch-------hHHHHHHHHH-HcCeeecCCc--------eEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence 577999998741 4567776555 5899999873 4788764 2488999999999987764
No 127
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=99.36 E-value=4.5e-11 Score=92.27 Aligned_cols=143 Identities=15% Similarity=0.135 Sum_probs=100.2
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhc-c--cC-CChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLAR-F--SS-VSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIEC 79 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~-~--~~-~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 79 (163)
++|+|+||+++ ++++++.+..... + .+ .++..+.++...++.. +..++.++.++++++++.+.|++.|+++
T Consensus 242 l~g~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~----~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 316 (393)
T TIGR01822 242 LGGASGGFTTA-RKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEML----EASNELRDRLWANTRYFRERMEAAGFDI 316 (393)
T ss_pred hhCCCcEEEEe-CHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 56889999999 8999998877543 2 22 2333344444554321 2346778899999999999998888877
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC--CCCceEEEEEec-CChhHHHHHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC--IEPGWFSFSFTL-LTEKDIHVVMERIRRIS 156 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~--~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~ 156 (163)
.++.+.+ +.+.++.. .++.++++.|++ +||.+. +..|.. .+..++|++++. ++++++++++++|.++.
T Consensus 317 ~~~~~~~-~~i~~~~~------~~~~~l~~~L~~-~gI~v~-~~~~~~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~ 387 (393)
T TIGR01822 317 KPADHPI-IPVMLYDA------VLAQRFARRLLE-EGIYVT-GFFYPVVPKGQARIRVQISAAHTEEQLDRAVEAFTRIG 387 (393)
T ss_pred CCCCCCE-EEEEeCCH------HHHHHHHHHHHH-CCeeEe-eeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 6655553 44444432 257889999887 799998 555532 234579998865 37899999999999987
Q ss_pred HHhh
Q 042816 157 QTCK 160 (163)
Q Consensus 157 ~~~~ 160 (163)
+++.
T Consensus 388 ~~~~ 391 (393)
T TIGR01822 388 RELG 391 (393)
T ss_pred HHhC
Confidence 7654
No 128
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=99.36 E-value=4.7e-11 Score=93.92 Aligned_cols=149 Identities=9% Similarity=0.073 Sum_probs=101.5
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQL- 75 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 75 (163)
++ +|+|+||+++ ++++++.+..... .++.+++.|.++...++ ++.+ .++.+++.+.+.++.+.+.+ ++
T Consensus 290 l~-~G~pig~v~~-~~~i~~~~~~~~~~~T~~g~~l~~aaa~a~l~~i~~~~~-~~~~~~~g~~l~~~l~~l~~---~~~ 363 (451)
T PRK06918 290 LG-AGVPISGVIG-RKEIMDESAPGELGGTYAGSPLGCAAALAVLDIIEKENL-NDRAIELGKVVMNRFEEMKN---KYN 363 (451)
T ss_pred hc-CCCccEEEEE-cHHHHhccCCCCcCcCCCcCHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHh---hCC
Confidence 45 8999999999 8999888764433 25788888888555553 4433 56677777766666665544 23
Q ss_pred CCccccCCceeEEEeecCCc-ccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHH
Q 042816 76 GIECAKSNGGFYCWADMSGL-ISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIR 153 (163)
Q Consensus 76 g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~ 153 (163)
.+....+.|+++.|...... ...+.......+.+.+.+ +||.+.|+..|+ +++|++++. ++++++++++++|.
T Consensus 364 ~~~~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~Gvlv~~~~~~~----~~lrl~p~l~~t~~~id~~l~~l~ 438 (451)
T PRK06918 364 CIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKEANK-RGLLLLSAGTYG----NVIRVLMPLVITDEQLEEGLTIIE 438 (451)
T ss_pred CceeeccceeEEEEEEccCCCcCCCcHHHHHHHHHHHHH-CCeEEeecCCCC----CEEEEECCCccCHHHHHHHHHHHH
Confidence 23334567888887654211 001111234566666665 899999986663 689999865 68999999999999
Q ss_pred HHHHHhhh
Q 042816 154 RISQTCKS 161 (163)
Q Consensus 154 ~~~~~~~~ 161 (163)
+++.++.+
T Consensus 439 ~~l~~~~~ 446 (451)
T PRK06918 439 ESLQACYE 446 (451)
T ss_pred HHHHHHHH
Confidence 99987654
No 129
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=99.36 E-value=2.3e-11 Score=95.74 Aligned_cols=150 Identities=11% Similarity=0.144 Sum_probs=106.0
Q ss_pred CCCceeE------EEEEecCHHHHHHHHHhhc----c--c-CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Q 042816 3 SLPGFRI------SVIYSYNNSVLAAAKKLAR----F--S-SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFV 69 (163)
Q Consensus 3 ~~~G~Ri------G~~i~~~~~~~~~~~~~~~----~--~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 69 (163)
.++|+|+ ||++++++++.+.+++... + + +.+...|.+++..|.+... +.+.....+ ++++|.
T Consensus 255 ~~Sg~K~g~~~~GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~-~~~~~~~~~----~~~~l~ 329 (460)
T PRK13238 255 TMSAKKDAMVNIGGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGMD-EDYLAYRIG----QVEYLG 329 (460)
T ss_pred EEecccCCCCcceeEEEcChHHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhhC-hHHHHHHHH----HHHHHH
Confidence 4567775 3556534688888877641 2 2 2455558888877654211 233344333 579999
Q ss_pred HHhhhcCCccccCCceeEEEeecCCcc---cCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCC-----------CceEEE
Q 042816 70 AGLRQLGIECAKSNGGFYCWADMSGLI---SSYSEKGELELWDKLLNVAKVNVTPGSSCHCIE-----------PGWFSF 135 (163)
Q Consensus 70 ~~l~~~g~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~-----------~~~iRi 135 (163)
+.|++.|+.+..|.||+|+++++.... .+.+. .+..|+.+|+++.||.+.|+..|..+. .+.+|+
T Consensus 330 ~~L~~~G~~~~~p~Gg~~v~~d~~~~~~~~~~~~~-~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rl 408 (460)
T PRK13238 330 EGLEEAGVPIQTPAGGHAVFVDAGKFLPHIPAEQF-PAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAPAELLRL 408 (460)
T ss_pred HHHHHCCCCeEccCCceEEEEEchhcCCCCCCCCC-chHHHHHHHHHHcCeeeecccceecccCCCCccccCCccceEEE
Confidence 999999999999999999999986542 11122 458899999999999999988775322 479999
Q ss_pred EEec--CChhHHHHHHHHHHHHHHH
Q 042816 136 SFTL--LTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 136 ~~~~--~~~~~l~~~~~~l~~~~~~ 158 (163)
++.. -+.+.++.+.++|.++.++
T Consensus 409 a~~rr~~~~~~~~~~~~~l~~~~~~ 433 (460)
T PRK13238 409 AIPRRVYTQSHMDYVAEALKAVKEN 433 (460)
T ss_pred ecccccCCHHHHHHHHHHHHHHHHh
Confidence 9974 2678899999999887643
No 130
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=99.36 E-value=3.9e-11 Score=93.62 Aligned_cols=145 Identities=8% Similarity=-0.025 Sum_probs=94.6
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSML---SDTKFVQKFININRERLRRLYVKFVAGLRQLG 76 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 76 (163)
++ +|+|+||+++ ++++++.+..... .++.+++.|.++.+.+ +++.+ .++.++..+.++++.+.+.+.+. .
T Consensus 268 l~-~G~pig~v~~-~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~~-~~~~~~~g~~l~~~L~~l~~~~~--~ 342 (420)
T TIGR00700 268 LA-DGLPLSGVTG-RAEIMDAPAPGGLGGTYAGNPLACAAALAVLAIIESEGL-IERARQIGRLVTDRLTTLKAVDP--R 342 (420)
T ss_pred cc-CCcceEEEEe-cHHHHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHhhCC--C
Confidence 45 8999999999 8999888754333 3578889998885554 43333 45555555555555444433221 2
Q ss_pred CccccCCceeEEEeecCCc-ccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHH
Q 042816 77 IECAKSNGGFYCWADMSGL-ISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRR 154 (163)
Q Consensus 77 ~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~ 154 (163)
+....+. |.++|+++... ...+.......+.+.+.+ +||.+.|+..|+ +++||+++. ++++++++++++|.+
T Consensus 343 ~~~vrg~-G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~-~Gv~i~p~~~f~----~~lRl~p~l~~~~~~l~~~~~~l~~ 416 (420)
T TIGR00700 343 IGDVRGL-GAMIAVELVDPGTTEPDAGLAERIATAAHA-AGLLLLTCGMFG----NIIRFLPPLTIGDELLSEGLDILCA 416 (420)
T ss_pred EEEeecc-ceEEEEEEecCCCCCccHHHHHHHHHHHHH-CCeEEeccCCCC----CEEEEECCCCcCHHHHHHHHHHHHH
Confidence 3334455 66778776321 000111234556666655 999999987774 689999864 588999999999998
Q ss_pred HHH
Q 042816 155 ISQ 157 (163)
Q Consensus 155 ~~~ 157 (163)
++.
T Consensus 417 ~l~ 419 (420)
T TIGR00700 417 ILA 419 (420)
T ss_pred Hhh
Confidence 874
No 131
>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]
Probab=99.34 E-value=2e-11 Score=91.56 Aligned_cols=152 Identities=18% Similarity=0.186 Sum_probs=117.3
Q ss_pred CCCCceeEEEEEe--cCHHHHHHHHHhhcc-cCCChHHHHHHHHhcCCh-----H--HHHHHHHHHHHHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYS--YNNSVLAAAKKLARF-SSVSAPSQNLLVSMLSDT-----K--FVQKFININRERLRRLYVKFVAG 71 (163)
Q Consensus 2 ~~~~G~RiG~~i~--~~~~~~~~~~~~~~~-~~~s~~~q~~~~~~l~~~-----~--~~~~~~~~~~~~~~~~~~~l~~~ 71 (163)
+|-.|.|-||+-. -++++.+.+.+..+. .+++...|.....++.-+ . ......+...+.++.|...+.+.
T Consensus 299 ~gECG~RGGYmEv~n~~prv~~qi~Kl~si~lc~~V~GQ~~vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~~ 378 (475)
T KOG0258|consen 299 MGECGQRGGYMESLNRDPRVKQQIKKLASIKLCPQVSGQKLVDLVVNPPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDA 378 (475)
T ss_pred eeeecccCCeeecccCChhHHHHHHHHHhhhhcCCccchhhhceecCCCCCCCcchhhhhhhhHhHHHHHHHHhHHHHHH
Confidence 4567899999887 267888888888774 688888898887777543 1 12456678888999999999999
Q ss_pred hhhc-CCccccCCceeEEEeec--CCcc----cCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-CCceEEEEEecCChh
Q 042816 72 LRQL-GIECAKSNGGFYCWADM--SGLI----SSYSEKGELELWDKLLNVAKVNVTPGSSCHCI-EPGWFSFSFTLLTEK 143 (163)
Q Consensus 72 l~~~-g~~~~~~~~g~~~~~~~--~~~~----~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-~~~~iRi~~~~~~~~ 143 (163)
+++. |+++.+++|.+|++.++ |... ...+...+.-+|.+||+..||.|+||++|+.. +.-++|..+.. +.
T Consensus 379 ~ns~~gi~cn~~qGAMY~fP~i~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFGQ~~GtyH~R~TiLp-~~- 456 (475)
T KOG0258|consen 379 FNSLEGISCNPVQGAMYLFPQISLPPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGSGFGQKEGTYHFRTTILP-PG- 456 (475)
T ss_pred HhhcCceeeccCccceeecccccCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCCCCCCCceeEEEEeecC-ch-
Confidence 9999 99999999999999654 5432 12344467888999999999999999999964 46699999985 32
Q ss_pred HHHHHHHHHHHHHH
Q 042816 144 DIHVVMERIRRISQ 157 (163)
Q Consensus 144 ~l~~~~~~l~~~~~ 157 (163)
+ +.+++++++-.
T Consensus 457 -~-~~i~~~~~fH~ 468 (475)
T KOG0258|consen 457 -L-EIIEKFKKFHA 468 (475)
T ss_pred -h-HHHHHHHHHHH
Confidence 4 66777666543
No 132
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=99.34 E-value=4.3e-11 Score=91.92 Aligned_cols=145 Identities=14% Similarity=0.210 Sum_probs=96.8
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcccCCChH----------HHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAP----------SQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAG 71 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~----------~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 71 (163)
|+ +|.|+||+++ ++++++.+.+...+++.+.+ .+.++...+.+. .+++++.++.++.. +++.+.
T Consensus 210 ~~-~~g~~G~l~~-~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~---~~~l~~~~~~~~~~-~~l~~~ 283 (370)
T TIGR02539 210 MA-ASGPCGVLGM-SEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPHV---VERVKRWDEEVKKT-RWFVAE 283 (370)
T ss_pred cc-CCCCEEEEEE-CHHHHhhhcccccCCccceeeeecccccccHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHHHHH
Confidence 45 5778999999 89999999887654332222 444444455432 35556666666665 589999
Q ss_pred hhhcCCcc--ccCCceeEEEeecCCccc--CCChhhHHHHHHHHHHhcCeE-EcCCCCCCCCCCceEEEEEecCChhHHH
Q 042816 72 LRQLGIEC--AKSNGGFYCWADMSGLIS--SYSEKGELELWDKLLNVAKVN-VTPGSSCHCIEPGWFSFSFTLLTEKDIH 146 (163)
Q Consensus 72 l~~~g~~~--~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~gi~-v~pg~~f~~~~~~~iRi~~~~~~~~~l~ 146 (163)
|++.|+++ ..|..+.|+++++|.... .....+...+.+.|.+ +||. +.|| .++++|+++...++++++
T Consensus 284 L~~~g~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e-~GI~~ir~~------~~~~iRis~~~~t~e~i~ 356 (370)
T TIGR02539 284 LEDIGFIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEELKK-RGIHGIRSG------QTKYFKLSVYGLTKEQVE 356 (370)
T ss_pred HHhCCcEEEccCCCcCceEEEECCchhHHhhhhccccHHHHHHHHh-CCCccccCC------cceEEEEEecCCCHHHHH
Confidence 99998875 235667788888873200 0000134568887776 7997 5542 156999997445889999
Q ss_pred HHHHHHHHHHHHh
Q 042816 147 VVMERIRRISQTC 159 (163)
Q Consensus 147 ~~~~~l~~~~~~~ 159 (163)
.+++.|.++++++
T Consensus 357 ~l~~~L~~~~~~~ 369 (370)
T TIGR02539 357 YVVDSFEEIVEEY 369 (370)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887653
No 133
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=99.34 E-value=6.8e-11 Score=89.87 Aligned_cols=141 Identities=16% Similarity=0.164 Sum_probs=99.1
Q ss_pred CCCceeEEEEEecCHHHHHHHHHhh-------------------cccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 042816 3 SLPGFRISVIYSYNNSVLAAAKKLA-------------------RFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRR 63 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~~~~~~~-------------------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 63 (163)
|++| +||+++ ++++++.+.... ..++++.+.+.++..+++.-.. +..+++..+.+++
T Consensus 191 ~~~G--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~-~g~~~~~~~~~~~ 266 (355)
T TIGR03301 191 GVPG--FGFVIA-RRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEA-EGGVPARIARYRR 266 (355)
T ss_pred cCCc--eeEEEE-CHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHH-cccHHHHHHHHHH
Confidence 5566 699999 889888876211 1235676776766666653210 1225677778899
Q ss_pred HHHHHHHHhhhcCCccccC---CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEE-ec
Q 042816 64 LYVKFVAGLRQLGIECAKS---NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSF-TL 139 (163)
Q Consensus 64 ~~~~l~~~l~~~g~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~-~~ 139 (163)
+++++.+.|++.|+++..+ .+++++|+.+|..- . .+..++.+.|.+ +||.+.||..+. .+++||++ ..
T Consensus 267 ~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~l~~-~gi~i~~~~~~~---~~~iRis~~~~ 338 (355)
T TIGR03301 267 NRELLVDGLRALGFQPLLPERWQSPIIVSFLYPDDP---D-FDFDDFYQELKE-RGFVIYPGKLTL---ADTFRIGTIGE 338 (355)
T ss_pred HHHHHHHHHHHcCCeeecCCCCCCCcEEEEECCCCC---c-chHHHHHHHHHH-CCEEEECCcccc---ccEEEEecCCC
Confidence 9999999999888775433 35667888887520 0 145688888776 899999987654 37999997 44
Q ss_pred CChhHHHHHHHHHHHH
Q 042816 140 LTEKDIHVVMERIRRI 155 (163)
Q Consensus 140 ~~~~~l~~~~~~l~~~ 155 (163)
.+.++++.+++.|+++
T Consensus 339 ~~~~~i~~~~~~l~~~ 354 (355)
T TIGR03301 339 IDAADIERLLEAIKDA 354 (355)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 5789999999998865
No 134
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=99.33 E-value=4.2e-11 Score=92.75 Aligned_cols=138 Identities=13% Similarity=0.076 Sum_probs=99.9
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIEC 79 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 79 (163)
+| +|+|+||+++ ++++++.+..... .++.+++.|.++...|+.- .+ +...+.+.++.+++.+.|++.+...
T Consensus 254 l~-~G~~ig~~~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~---~~--~~~~~~~~~~~~~l~~~L~~~~~~~ 326 (398)
T PRK03244 254 LG-GGLPIGACLA-FGPAADLLTPGLHGSTFGGNPVACAAALAVLDTI---AS--EGLLENAERLGEQLRAGIEALGHPL 326 (398)
T ss_pred hh-CCcccEEEEE-cHHHHhhccCCCCcCCCCCCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHhcCCCc
Confidence 45 7999999999 8888888765333 3578899999888887521 10 1234455555666777777754321
Q ss_pred --ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHH
Q 042816 80 --AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRIS 156 (163)
Q Consensus 80 --~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~ 156 (163)
.....|.++|+.++.. ....+.+.|++ +||.+.|. .++.+|++++. +++++++++++.|.+++
T Consensus 327 ~~~v~g~g~~~~i~~~~~-------~~~~~~~~l~~-~Gv~~~~~------~~~~iR~~p~~~~t~~~i~~~~~~l~~~l 392 (398)
T PRK03244 327 VDHVRGRGLLLGIVLTAP-------VAKAVEAAARE-AGFLVNAV------APDVIRLAPPLIITDAQVDAFVAALPAIL 392 (398)
T ss_pred eeeEeeccEEEEEEEecc-------HHHHHHHHHHH-CCeEEeec------CCCEEEEECCCcCCHHHHHHHHHHHHHHH
Confidence 1224788999998642 46788888876 89999873 14789999765 68899999999999999
Q ss_pred HHhh
Q 042816 157 QTCK 160 (163)
Q Consensus 157 ~~~~ 160 (163)
.+.+
T Consensus 393 ~~~~ 396 (398)
T PRK03244 393 DAAA 396 (398)
T ss_pred Hhcc
Confidence 8754
No 135
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=99.30 E-value=8.1e-11 Score=91.18 Aligned_cols=133 Identities=14% Similarity=0.172 Sum_probs=96.3
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG--- 76 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g--- 76 (163)
+|++|+|+||+++ ++++++.+..... .++.+++.|.++...|+.- ++ +...+...++.+++.+.|++++
T Consensus 257 lg~gg~~ig~~~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~---~~--~~l~~~~~~~~~~l~~~L~~l~~~~ 330 (396)
T PRK04073 257 LGGGVFPISCVAA-NRDILGVFTPGSHGSTFGGNPLACAVSIAALEVL---EE--EKLPERSLELGEYFKEQLKEIDNPM 330 (396)
T ss_pred ccCCCCcceEEEE-cHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHH---Hh--cCHHHHHHHHHHHHHHHHHhhcCCc
Confidence 6888999999999 8999988865333 3568889999888888632 11 1233455566777888777752
Q ss_pred CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHHHHHHHH
Q 042816 77 IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVMERIRRI 155 (163)
Q Consensus 77 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~~~l~~~ 155 (163)
+...++. |.+++++++. ++.++++.|++ +||.+.|. +++++||+.. .++++++++++++|.++
T Consensus 331 i~~~~~~-g~~~~~~~~~--------~~~~~~~~l~~-~Gv~~~~~------~~~~iRi~p~l~~t~e~i~~~~~~l~~~ 394 (396)
T PRK04073 331 IKEVRGR-GLFIGVELNE--------PARPYCEALKE-EGLLCKET------HETVIRFAPPLVITKEELDWAFEKIKAV 394 (396)
T ss_pred ccceecc-eEEEEEEecc--------hHHHHHHHHHH-CCeEEecC------CCCEEEEECCcccCHHHHHHHHHHHHHH
Confidence 4444455 5568888864 56788988876 89999763 1479999953 23889999999999887
Q ss_pred H
Q 042816 156 S 156 (163)
Q Consensus 156 ~ 156 (163)
+
T Consensus 395 l 395 (396)
T PRK04073 395 L 395 (396)
T ss_pred h
Confidence 5
No 136
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=99.29 E-value=2.1e-10 Score=89.02 Aligned_cols=144 Identities=15% Similarity=0.061 Sum_probs=102.5
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcc----cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARF----SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGI 77 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~----~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 77 (163)
||++| ||+++ ++++++.+...... .+.++..+.++...|+.- .+. +..++.+.++.+++.+.|++.|+
T Consensus 249 ~g~~G---G~i~~-~~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~---~~~-~~~~~~~~~~~~~l~~~L~~~g~ 320 (402)
T TIGR01821 249 FGVVG---GYIAA-SRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHL---KES-QDLRRAHQENVKRLKNLLEALGI 320 (402)
T ss_pred hccCC---ceeec-CHHHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHh---hcC-HHHHHHHHHHHHHHHHHHHHcCC
Confidence 56666 99999 89999988766542 235666777776776542 222 44555667888999999998898
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-CCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI-EPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
++.++.+++ +.+.++.. ..+.++++.|++++||.+.|......+ +.+++||++.. +++++++++++.|.++
T Consensus 321 ~~~~~~~~i-~~i~~~~~------~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~~~ 393 (402)
T TIGR01821 321 PVIPNPSHI-VPVIIGDA------ALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALLLV 393 (402)
T ss_pred CcCCCCCCE-EEEEeCCH------HHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 888777765 44455431 146788888877579999986533322 35799999853 4889999999999998
Q ss_pred HHHhh
Q 042816 156 SQTCK 160 (163)
Q Consensus 156 ~~~~~ 160 (163)
++++.
T Consensus 394 ~~~~~ 398 (402)
T TIGR01821 394 WDRLG 398 (402)
T ss_pred HHHcC
Confidence 87653
No 137
>PRK09064 5-aminolevulinate synthase; Validated
Probab=99.28 E-value=2.1e-10 Score=89.06 Aligned_cols=143 Identities=16% Similarity=0.118 Sum_probs=101.2
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcc----cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARF----SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGI 77 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~----~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 77 (163)
||++| ||+++ ++++++.+...... .+.++..+.++...++.- ++. ...++.+.++++++.+.|++.|+
T Consensus 250 ~g~~G---G~~~~-~~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~---~~~-~~~~~~~~~~~~~l~~~L~~~g~ 321 (407)
T PRK09064 250 FGVMG---GYIAG-SAALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHL---KES-NEERERHQERAAKLKAALDAAGI 321 (407)
T ss_pred hhccC---ceEec-CHHHHHHHHHhCccccccCcCCHHHHHHHHHHHHHH---hcC-HHHHHHHHHHHHHHHHHHHHcCC
Confidence 56666 99999 89999988776542 134555565555555432 222 34467888899999999999888
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-CCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI-EPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
++.++.++ ++++.++.. .++.++.+.|++++||.|.+......+ +.+++||++.. ++.++++.+++.|.++
T Consensus 322 ~~~~~~~~-iv~i~~~~~------~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~ 394 (407)
T PRK09064 322 PVMPNESH-IVPVMVGDP------EKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEV 394 (407)
T ss_pred CCCCCCCC-EEEEEeCCH------HHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 88776655 455555431 256789988876579999986543322 34789999863 4889999999999998
Q ss_pred HHHh
Q 042816 156 SQTC 159 (163)
Q Consensus 156 ~~~~ 159 (163)
+.++
T Consensus 395 ~~~~ 398 (407)
T PRK09064 395 WARL 398 (407)
T ss_pred HHHc
Confidence 8764
No 138
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=99.25 E-value=6.3e-10 Score=85.25 Aligned_cols=144 Identities=17% Similarity=0.142 Sum_probs=97.5
Q ss_pred CCCceeEEEEEecCHHHHHHHHHhhcc-------------------cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 042816 3 SLPGFRISVIYSYNNSVLAAAKKLARF-------------------SSVSAPSQNLLVSMLSDTKFVQKFININRERLRR 63 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~~~~~~~~~-------------------~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 63 (163)
|.|| +||+++ ++++++.+...... ++++.+.+.++..++..-.. ...+++..+.+.+
T Consensus 197 g~~G--~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~-~~~~~~~~~~~~~ 272 (368)
T PRK13479 197 GVPG--FGFVIA-RRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEE-EGGVPARGARYAN 272 (368)
T ss_pred cCCC--ceEEEE-CHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHH-hhCHHHHHHHHHH
Confidence 6677 599999 88888876653211 24555554444444432110 1234666788899
Q ss_pred HHHHHHHHhhhcCCccccCC-----ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEE-
Q 042816 64 LYVKFVAGLRQLGIECAKSN-----GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSF- 137 (163)
Q Consensus 64 ~~~~l~~~l~~~g~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~- 137 (163)
+++.+.+.|+++|+++..+. +...+++.-++.+ +..++.+.|.+ +||.|.+|..+. .+++|++.
T Consensus 273 ~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~L~~-~gi~v~~g~~~~---~~~iRis~~ 342 (368)
T PRK13479 273 NQRTLVAGMRALGFEPLLDAEIQSPIIVTFHAPADPAY------DFKEFYERLKE-QGFVIYPGKLTQ---VDTFRIGCI 342 (368)
T ss_pred HHHHHHHHHHHcCCcccCCchhcCceEEEEECCCCCCc------CHHHHHHHHHH-CCEEEecCCCCC---CCEEEEecC
Confidence 99999999999887765332 1233443222212 56788888876 899999986542 56899985
Q ss_pred ecCChhHHHHHHHHHHHHHHHhh
Q 042816 138 TLLTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 138 ~~~~~~~l~~~~~~l~~~~~~~~ 160 (163)
+..+.++++.+++.|.++++++.
T Consensus 343 ~~~t~edi~~~l~~L~~~l~~~~ 365 (368)
T PRK13479 343 GDVDAADIRRLVAAIAEALYWMG 365 (368)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcC
Confidence 66688999999999999988754
No 139
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=99.25 E-value=3.8e-10 Score=87.41 Aligned_cols=144 Identities=16% Similarity=0.137 Sum_probs=92.2
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSD---TKFVQKFININRERLRRLYVKFVAGLRQLG 76 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 76 (163)
++.+++|+||+++ ++++++.+..... .++.+++.|.++...++. +.+ .++.++..+.++++ +.+.+...+
T Consensus 249 l~~g~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~~~~-~~~~~~~~~~l~~~---l~~l~~~~~ 323 (400)
T PTZ00125 249 LSGGLYPISAVLA-NDDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEEKL-AENAQRLGEVFRDG---LKELLKKSP 323 (400)
T ss_pred ccCCCcCcEEEEE-cHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHH---HHHHHhcCC
Confidence 4444469999999 8999988865433 246778888877665532 211 22333333322222 222223233
Q ss_pred -CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHHHHHHH
Q 042816 77 -IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVMERIRR 154 (163)
Q Consensus 77 -~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~~~l~~ 154 (163)
+....+ .|.++|+.++..- + .+..++++.|++ +||.+.|+. ++++||+.. .++++++++++++|.+
T Consensus 324 ~~~~~~~-~g~~~~v~~~~~~---~-~~~~~~~~~l~~-~Gv~v~~~~------~~~lRi~~~~~~~~~~i~~~l~~l~~ 391 (400)
T PTZ00125 324 WVKEIRG-KGLLNAIVFDHSD---G-VNAWDLCLKLKE-NGLLAKPTH------DNIIRFAPPLVITKEQLDQALEIIKK 391 (400)
T ss_pred CeEEEec-ccEEEEEEEccCc---c-hHHHHHHHHHHH-CCeEEeecC------CCEEEEECCccCCHHHHHHHHHHHHH
Confidence 222344 5667777776310 0 256788998886 899998852 579999964 2488999999999999
Q ss_pred HHHHhhhc
Q 042816 155 ISQTCKSH 162 (163)
Q Consensus 155 ~~~~~~~~ 162 (163)
++.++.++
T Consensus 392 ~l~~~~~~ 399 (400)
T PTZ00125 392 VLKSFDSN 399 (400)
T ss_pred HHHHHhcC
Confidence 99988765
No 140
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=99.21 E-value=1.1e-09 Score=84.36 Aligned_cols=138 Identities=17% Similarity=0.126 Sum_probs=96.6
Q ss_pred eEEEEEecCHHHHHHHHHhhc-c--cC-CChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCC
Q 042816 8 RISVIYSYNNSVLAAAKKLAR-F--SS-VSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSN 83 (163)
Q Consensus 8 RiG~~i~~~~~~~~~~~~~~~-~--~~-~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~ 83 (163)
+.||+++ ++++++.+..... + .+ .+++.|.++...++.- .+. ....+.+.++++++.+.|++.|+++..|+
T Consensus 238 ~gG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~~-~~~~~~~~~~~~~l~~~L~~~g~~~~~~~ 312 (385)
T TIGR01825 238 VGGYAAG-HKELIEYLKNRARPFLFSTAQPPAVVAALAAAVDEL---QRS-PELMERLWDNTRFFKAGLGKLGYDTGGSE 312 (385)
T ss_pred CCCEEec-CHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHH---hcC-HHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 3399999 8999999876643 2 22 4556677766666432 111 23556667789999999988898888887
Q ss_pred ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC--CCCceEEEEEe-cCChhHHHHHHHHHHHHHHHh
Q 042816 84 GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC--IEPGWFSFSFT-LLTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~--~~~~~iRi~~~-~~~~~~l~~~~~~l~~~~~~~ 159 (163)
+.+ +++.++.. .++.++++.|++ +||.+. +..|.. .+.+++|+++. .++++++++++++|.++++++
T Consensus 313 ~~~-~~~~~~~~------~~~~~~~~~L~~-~gi~v~-~~~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~~~ 382 (385)
T TIGR01825 313 TPI-TPVVIGDE------KAAQEFSRRLFD-EGIFAQ-SIVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEKVGKEL 382 (385)
T ss_pred CCE-EEEEECCH------HHHHHHHHHHHH-CCcEEc-ccCCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHHHHHh
Confidence 764 33344421 256789999987 599985 445542 23579999874 358899999999999988764
No 141
>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.
Probab=99.19 E-value=1.3e-10 Score=86.37 Aligned_cols=143 Identities=15% Similarity=0.218 Sum_probs=101.5
Q ss_pred CCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCC---hHHHH----HHHHHHHHHHHHHHHHHHHHhh
Q 042816 3 SLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSD---TKFVQ----KFININRERLRRLYVKFVAGLR 73 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~---~~~~~----~~~~~~~~~~~~~~~~l~~~l~ 73 (163)
|=+|.|+||++..++++.+.+.++... .++|.=.|.-+.++|+. +.-.. ...+--++.+++|.+.|.+.+.
T Consensus 197 GHAGSR~GWAlVKD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~~~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~~ 276 (363)
T PF04864_consen 197 GHAGSRFGWALVKDEEVAKKMTKYMELNTIGVSRDSQLRALKILKVVLDGYGTEKGTEDIFHFGYSTMRERWEKLRAAVS 276 (363)
T ss_dssp S-GGG-EEEEEES-HHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHHCCHHTTTTSHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccccccceeeecCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999884 68999999877777753 10001 3667888899999999999997
Q ss_pred hcC-Cccc-------------cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec
Q 042816 74 QLG-IECA-------------KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL 139 (163)
Q Consensus 74 ~~g-~~~~-------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~ 139 (163)
..+ ++.. ...+.-|.|+++... +..+... +++++||..+.|..|+. ++.|+|||+..
T Consensus 277 ~S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~e-------ed~DC~~-~l~~~~I~tr~G~~fga-~~ryVRlSml~ 347 (363)
T PF04864_consen 277 ASKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCERE-------EDEDCYA-VLREAKIITRSGVLFGA-DSRYVRLSMLK 347 (363)
T ss_dssp CSSSEEE---SCEEETTTTCEEE---SEEEEEESSC-------GGSSHHH-HHHCTTEEEEEGGGGTS--TTEEEEESSS
T ss_pred hcCceecCcCCchhccccccccCCCCCeEEEecCCc-------ccccHHH-HHHhCCcccCCCCccCC-CCCeEEEeccC
Confidence 752 2221 122455899999852 2344444 44569999999999996 47999999998
Q ss_pred CChhHHHHHHHHHHHH
Q 042816 140 LTEKDIHVVMERIRRI 155 (163)
Q Consensus 140 ~~~~~l~~~~~~l~~~ 155 (163)
.+++++..+++|...
T Consensus 348 -~~d~Fd~l~~rL~~l 362 (363)
T PF04864_consen 348 -RDDDFDQLLERLSKL 362 (363)
T ss_dssp --HHHHHHHHHHHHCC
T ss_pred -CHHHHHHHHHHHHhh
Confidence 889999999998753
No 142
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=99.19 E-value=1.2e-09 Score=85.25 Aligned_cols=143 Identities=12% Similarity=0.079 Sum_probs=96.3
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc----
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL---- 75 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---- 75 (163)
++ +|+|+||+++ ++++++.+..... .++.+++.|.++...|+.- ++ +...+.++++.+++.+.|++.
T Consensus 269 l~-~G~pigav~~-~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~---~~--~~l~~~~~~~g~~l~~~L~~l~~~~ 341 (421)
T PRK06777 269 LG-GGMPISAVVG-RAEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVI---AE--EKLCQRALILGAHLVEVLEKAKASC 341 (421)
T ss_pred hc-CCCceEEEEE-cHHHHhccCCCCCCCCCCcCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45 7999999999 8999888765433 2567999999888888632 11 345555666666666666553
Q ss_pred -CCccccCCceeEEE-eecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHHHHH
Q 042816 76 -GIECAKSNGGFYCW-ADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVMERI 152 (163)
Q Consensus 76 -g~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~~~l 152 (163)
.+...++.|.++.+ ++.+.. +.+...-...+.+.+++ +||.+.|+..|+ +++||+.. .++++++++++++|
T Consensus 342 ~~i~~vrg~G~~~~i~~~~~~~-~~~~~~~~~~l~~~~~~-~Gv~i~~~~~~g----~~lr~~ppl~i~~~~i~~~~~~l 415 (421)
T PRK06777 342 PAIVDIRARGSMVAVEFNDPQT-GKPSPEFTRQYQRQALE-EGLLLLSCGVHG----NVIRFLYPLTIPDAQFSKALNIL 415 (421)
T ss_pred CCeEEecCceEEEEEEEecCcc-CCccHHHHHHHHHHHHh-CCeEEeecCCCC----CEEEEeCCCCCCHHHHHHHHHHH
Confidence 24456788888864 332211 01111123445555565 999999986664 58999985 24899999999999
Q ss_pred HHHHH
Q 042816 153 RRISQ 157 (163)
Q Consensus 153 ~~~~~ 157 (163)
.+++.
T Consensus 416 ~~~l~ 420 (421)
T PRK06777 416 TRLLA 420 (421)
T ss_pred HHHHh
Confidence 98864
No 143
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=99.19 E-value=2e-09 Score=82.11 Aligned_cols=139 Identities=15% Similarity=0.104 Sum_probs=95.7
Q ss_pred eeEEEEEecCHHHHHHHHH---hh-----------------ccc-CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 042816 7 FRISVIYSYNNSVLAAAKK---LA-----------------RFS-SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLY 65 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~---~~-----------------~~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 65 (163)
.++||++. ++++++.+.. .. ... +++...+.++..+++.-. ...+++..+..+++.
T Consensus 192 ~g~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~--~~~~~~~~~~~~~~~ 268 (356)
T cd06451 192 PGLGPIAF-SERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLIL--EEGLENRWARHRRLA 268 (356)
T ss_pred CCcceeEE-CHHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHH
Confidence 36899999 8888887763 00 011 233333444444543321 233567778888999
Q ss_pred HHHHHHhhhcCCccccC---CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CC
Q 042816 66 VKFVAGLRQLGIECAKS---NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LT 141 (163)
Q Consensus 66 ~~l~~~l~~~g~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~ 141 (163)
+++.+.|...|+++..+ .++.++|+.++... +..++++.|.+++||.+.||..+. .++++|+++.. .+
T Consensus 269 ~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~L~~~~gI~~~~g~~~~--~~~~iRis~~~~~~ 340 (356)
T cd06451 269 KALREGLEALGLKLLAKPELRSPTVTAVLVPEGV------DGDEVVRRLMKRYNIEIAGGLGPT--AGKVFRIGHMGEAT 340 (356)
T ss_pred HHHHHHHHHcCCeeccCcccCCCceEEEECCCCC------CHHHHHHHHHHhCCEEEecccccc--cCCEEEEecCCCCC
Confidence 99999999888777542 24556677777543 678899988873499999987543 25799999964 37
Q ss_pred hhHHHHHHHHHHHHH
Q 042816 142 EKDIHVVMERIRRIS 156 (163)
Q Consensus 142 ~~~l~~~~~~l~~~~ 156 (163)
+++++.+++.|.+++
T Consensus 341 ~e~v~~~~~~l~~~~ 355 (356)
T cd06451 341 REDVLGVLSALEEAL 355 (356)
T ss_pred HHHHHHHHHHHHHHh
Confidence 899999999998865
No 144
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=99.19 E-value=1.8e-09 Score=83.99 Aligned_cols=143 Identities=14% Similarity=0.103 Sum_probs=100.6
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcc---c-CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARF---S-SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGI 77 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~---~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 77 (163)
||++| ||+++ ++++++.+...... . +.++..+.++...|+.. ++. ...+..+.++.+++.+.|++.|+
T Consensus 249 ~g~~G---G~~~~-~~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~---~~~-~~~~~~~~~~~~~l~~~L~~~g~ 320 (406)
T PRK13393 249 FGVMG---GYITG-SAALCDFIRSFASGFIFTTSLPPAVAAGALASVRHL---KAS-SAERERHQDRVARLRARLDKAGI 320 (406)
T ss_pred hcccC---ceeeC-CHHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHH---hhC-HHHHHHHHHHHHHHHHHHHHcCC
Confidence 45666 99998 89999988876542 2 34555676676666542 222 23346678889999999988888
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-CCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI-EPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
++.++.+.++. +.++.. .++.++.+.|++++||.+.++.....+ +.+++||++.. +++++++++++.|.++
T Consensus 321 ~~~~~~~~i~~-v~~~~~------~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l~~~ 393 (406)
T PRK13393 321 PHLPNPSHIVP-VMVGDP------VLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQALSEI 393 (406)
T ss_pred CcCCCCCCeEE-EEeCCH------HHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 77777777543 344321 256788888887579999987543322 35789999963 4889999999999998
Q ss_pred HHHh
Q 042816 156 SQTC 159 (163)
Q Consensus 156 ~~~~ 159 (163)
+.++
T Consensus 394 ~~~~ 397 (406)
T PRK13393 394 WARL 397 (406)
T ss_pred HHhc
Confidence 7764
No 145
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=99.18 E-value=1.3e-09 Score=82.66 Aligned_cols=136 Identities=18% Similarity=0.129 Sum_probs=96.7
Q ss_pred eEEEEEecCHHHHHHHHHhhcc----cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCC
Q 042816 8 RISVIYSYNNSVLAAAKKLARF----SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSN 83 (163)
Q Consensus 8 RiG~~i~~~~~~~~~~~~~~~~----~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~ 83 (163)
+.||+++ ++++++.+...... .+.+++.+.++...++.. .+ .+..++.+.++++.+.+.|.+.|+....+.
T Consensus 207 ~gG~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~-~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~ 281 (349)
T cd06454 207 VGGYIAG-SKELIDYLRSYARGFIFSTSLPPAVAAAALAALEVL---QG-GPERRERLQENVRYLRRGLKELGFPVGGSP 281 (349)
T ss_pred cCCEEEC-CHHHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHH---hc-CHHHHHHHHHHHHHHHHHHHhcCCcccCCC
Confidence 4499999 88988887765442 245566666666666542 22 356788899999999999998888777666
Q ss_pred ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCC-CCCCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 84 GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCH-CIEPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~-~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
+++..++.++.. .+..++.+.|++ +||.+.++.... ....+++|++++. .+.+++++++++|.++
T Consensus 282 ~~~~~~~~~~~~------~~~~~~~~~L~~-~gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 282 SHIIPPLIGDDP------AKAVAFSDALLE-RGIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred CCcEEEEeCCCh------HHHHHHHHHHHh-CCceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 666555544422 267889998887 699999863221 1225799999974 4889999999998764
No 146
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=99.18 E-value=2.3e-09 Score=82.06 Aligned_cols=142 Identities=16% Similarity=0.176 Sum_probs=98.6
Q ss_pred CCCceeEEEEEecCHHHHHHHHHhh--------------------cccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 042816 3 SLPGFRISVIYSYNNSVLAAAKKLA--------------------RFSSVSAPSQNLLVSMLSDTKFVQKFININRERLR 62 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~~~~~~~--------------------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 62 (163)
|.|| +||+++ ++++++.+.... ..++++.+.+.++.++++.-.. +..++...+.+.
T Consensus 195 ~p~G--~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~-~g~~~~~~~~~~ 270 (363)
T TIGR02326 195 GVPG--FGFVIA-RQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEK-EGGVAARHQRYQ 270 (363)
T ss_pred cCCc--ceEEEE-CHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHH-hhCHHHHHHHHH
Confidence 4455 699999 888777643210 1135667777776655543210 122466788999
Q ss_pred HHHHHHHHHhhhcCCccccC---CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEE-e
Q 042816 63 RLYVKFVAGLRQLGIECAKS---NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSF-T 138 (163)
Q Consensus 63 ~~~~~l~~~l~~~g~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~-~ 138 (163)
++++++.+.|+++|++...+ .++...|+.++... + .+..++.+.|.+ +||.+.||..+. .+++||++ +
T Consensus 271 ~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~v~~~L~~-~gi~v~~g~~~~---~~~iRi~~~~ 342 (363)
T TIGR02326 271 QNQKTLVAGMRALGFEPLLDDEIQSPIITSFYSPEDP---D-YRFADFYQRLKE-QGFVIYPGKVSQ---VDCFRIGNIG 342 (363)
T ss_pred HHHHHHHHHHHHcCCeeccCcccCCceEEEEECCCCC---C-CCHHHHHHHHHH-CCEEEECCcCCC---CCEEEEecCC
Confidence 99999999998888766533 45666777877520 0 155778888765 899999998663 57999995 6
Q ss_pred cCChhHHHHHHHHHHHHH
Q 042816 139 LLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 139 ~~~~~~l~~~~~~l~~~~ 156 (163)
..+.++++.+++.|.+++
T Consensus 343 ~~~~edv~~~l~~l~~~l 360 (363)
T TIGR02326 343 EVDAADITRLLTAIGKAM 360 (363)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 568899999999998865
No 147
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=99.17 E-value=1.6e-09 Score=81.40 Aligned_cols=133 Identities=17% Similarity=0.298 Sum_probs=105.1
Q ss_pred CCCCCceeEEEEEe--cCHHHHHHHHHhhc------ccCCChHHHHHHHHhcCChH----HHHHHHHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVIYS--YNNSVLAAAKKLAR------FSSVSAPSQNLLVSMLSDTK----FVQKFININRERLRRLYVKF 68 (163)
Q Consensus 1 ~~~~~G~RiG~~i~--~~~~~~~~~~~~~~------~~~~s~~~q~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~l 68 (163)
.||+-|-|+|.+.+ .+.+.+..+..... +++++.-...+++.+|++++ | .++++.+++.+.++|+.+
T Consensus 247 nfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W-~~El~~Mr~Ri~~mR~~l 325 (396)
T COG1448 247 NFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEW-EQELEEMRQRILEMRQAL 325 (396)
T ss_pred hhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 48899999999766 46665554433322 35677788899999999975 5 677899999999999999
Q ss_pred HHHhhhc----CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhH
Q 042816 69 VAGLRQL----GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKD 144 (163)
Q Consensus 69 ~~~l~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~ 144 (163)
++.|++. .+++...+.|||.+.-+. .+-+..|.+++||+++.+ + |||++.++..+
T Consensus 326 v~~L~~~~~~~~f~~i~~Q~GMFsy~Gls-----------~~QV~rLree~~IY~v~s--------G--Ri~vaGl~~~n 384 (396)
T COG1448 326 VDALKALGAPRNFDFIISQRGMFSYTGLS-----------PEQVDRLREEFGIYLVAS--------G--RINVAGLNTSN 384 (396)
T ss_pred HHHHHhhCCCcccchHhhcCceeecCCCC-----------HHHHHHHHHhccEEEecC--------C--eeeeccCChhh
Confidence 9999995 488999999999987443 445556888899998742 1 99999999999
Q ss_pred HHHHHHHHHHH
Q 042816 145 IHVVMERIRRI 155 (163)
Q Consensus 145 l~~~~~~l~~~ 155 (163)
++...+.|.++
T Consensus 385 i~~va~ai~~v 395 (396)
T COG1448 385 IDYVAKAIAAV 395 (396)
T ss_pred HHHHHHHHHhh
Confidence 98888888765
No 148
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=99.14 E-value=2e-09 Score=83.71 Aligned_cols=140 Identities=14% Similarity=0.116 Sum_probs=100.6
Q ss_pred CceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--Cc--
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG--IE-- 78 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g--~~-- 78 (163)
+|+|+||+++ ++++++.+..... .++.+++.|.++.+.|+.- . .+..++.++++.+++.+.|++.+ ..
T Consensus 256 gG~~ig~~~~-~~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l---~--~~~~~~~~~~~~~~l~~~L~~l~~~~~~~ 329 (406)
T PRK12381 256 GGFPIGAMLT-TEKCASVMTVGTHGTTYGGNPLASAVAGKVLELI---N--TPEMLNGVKQRHDWFVERLNTINARYGLF 329 (406)
T ss_pred CCCceEEEEE-cHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH---h--hccHHHHHHHHHHHHHHHHHHHHhhCCCE
Confidence 7999999999 8999988865433 2467888888887766431 1 13466777788888888887752 22
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~ 157 (163)
......|+++|++++.... .....+.+.|.+ +||.+.++ +++.+|++++. ++++++++++++|.+++.
T Consensus 330 ~~vrg~Gl~~~~~l~~~~~----~~~~~~~~~l~~-~Gv~v~~~------g~~~lRl~p~~~~t~~~i~~~~~~l~~~l~ 398 (406)
T PRK12381 330 SEIRGLGLLIGCVLNAEYA----GKAKQISQEAAK-AGVMVLIA------GPNVVRFAPALNISEEEITTGLDRFARACE 398 (406)
T ss_pred EEEecCeEEEEEEecCchh----hHHHHHHHHHHH-CCcEEeeC------CCCEEEEeCCccCCHHHHHHHHHHHHHHHH
Confidence 1223457888988865210 134677777765 89999763 14689999875 589999999999999998
Q ss_pred Hhhh
Q 042816 158 TCKS 161 (163)
Q Consensus 158 ~~~~ 161 (163)
++.+
T Consensus 399 ~~~~ 402 (406)
T PRK12381 399 RFVS 402 (406)
T ss_pred HHHh
Confidence 7654
No 149
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=99.13 E-value=1.3e-09 Score=84.57 Aligned_cols=140 Identities=11% Similarity=0.077 Sum_probs=88.3
Q ss_pred CCCCceeEEEEEecCHHHHHHH--HHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc--
Q 042816 2 LSLPGFRISVIYSYNNSVLAAA--KKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-- 75 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~--~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-- 75 (163)
++. |+|+||+++ ++++++.+ ..... .++.+++.|.++...++.- ++ ....+.+.++.+++.+.|+..
T Consensus 262 l~~-g~~~g~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l---~~--~~~~~~~~~~~~~l~~~l~~~~~ 334 (413)
T cd00610 262 LGG-GLPLGAVLG-REEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVL---EE--EGLLENAAELGEYLRERLRELAE 334 (413)
T ss_pred ccC-ccccEEEEE-cHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHHHHh
Confidence 454 799999999 89998886 22222 2467778887776666421 11 233344444555555555443
Q ss_pred --CCccccCCceeEEEeecCCccc--CCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHH
Q 042816 76 --GIECAKSNGGFYCWADMSGLIS--SYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVME 150 (163)
Q Consensus 76 --g~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~ 150 (163)
+........|.++|+.++.... .........+++.|.+ +||.+.|+. ++.+|++++. +++++++++++
T Consensus 335 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gv~v~~~~------~~~lR~~~~~~~t~~~i~~~~~ 407 (413)
T cd00610 335 KHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALE-RGLLLRPSG------GNVIRLLPPLIITEEEIDEGLD 407 (413)
T ss_pred hCCcEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHHH-CCeEEeecC------CCEEEEECCCcCCHHHHHHHHH
Confidence 1111123456777878764210 0011256788888876 899999974 4789998865 47899999999
Q ss_pred HHHHH
Q 042816 151 RIRRI 155 (163)
Q Consensus 151 ~l~~~ 155 (163)
+|.++
T Consensus 408 ~l~~~ 412 (413)
T cd00610 408 ALDEA 412 (413)
T ss_pred HHHHh
Confidence 99875
No 150
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=99.11 E-value=3.7e-09 Score=81.94 Aligned_cols=145 Identities=20% Similarity=0.227 Sum_probs=99.1
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhh---------------------cc--cCCChHHHHHHHHhcCChHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLA---------------------RF--SSVSAPSQNLLVSMLSDTKFVQKFININR 58 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~---------------------~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~ 58 (163)
||.+| +||+++ ++++++.+.... .+ .+++.+.+.++..+++.-. +.-..+.+
T Consensus 224 ~gp~G--~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~--~~g~~~~~ 298 (401)
T PRK10874 224 YGPTG--IGVLYG-KSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLA--DIDINQAE 298 (401)
T ss_pred cCCCc--cEEEEE-chHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHH--HhCHHHHH
Confidence 56666 599999 888887654221 01 1345556666665554211 12234567
Q ss_pred HHHHHHHHHHHHHhhhc-CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC------CCCc
Q 042816 59 ERLRRLYVKFVAGLRQL-GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC------IEPG 131 (163)
Q Consensus 59 ~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~------~~~~ 131 (163)
++.++.++++.+.|+++ |+....+..+..+++.++.. +..++.+.|.+ +||.|.+|..+.. ..++
T Consensus 299 ~~~~~l~~~l~~~l~~~~g~~~~~~~~~~i~~~~~~~~-------~~~~~~~~L~~-~gI~v~~g~~~~~~~~~~~g~~~ 370 (401)
T PRK10874 299 SWSRSLATLAEDALAKLPGFRSFRCQDSSLLAFDFAGV-------HHSDLVTLLAE-YGIALRAGQHCAQPLLAALGVTG 370 (401)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEeCCCCCcEEEEEECCc-------CHHHHHHHHHH-CCcEEeccccchHHHHHHhCCCC
Confidence 77778889999999888 88776555555666677642 55788887765 8999999986642 1257
Q ss_pred eEEEEEec-CChhHHHHHHHHHHHHHHHh
Q 042816 132 WFSFSFTL-LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 132 ~iRi~~~~-~~~~~l~~~~~~l~~~~~~~ 159 (163)
++|+|+.. .++++++..++.|.++++.+
T Consensus 371 ~iRiS~~~~nt~edid~ll~al~~~~~~~ 399 (401)
T PRK10874 371 TLRASFAPYNTQSDVDALVNAVDRALELL 399 (401)
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence 99999974 37789999999999887764
No 151
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=99.10 E-value=4.3e-09 Score=82.24 Aligned_cols=141 Identities=9% Similarity=0.073 Sum_probs=91.5
Q ss_pred CceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHH---HhcCChHHHHHHHHHHHHHHHHHHHHHHHHh-hhcCCc
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLV---SMLSDTKFVQKFININRERLRRLYVKFVAGL-RQLGIE 78 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~g~~ 78 (163)
+|+++||+++ ++++.+.+..... .++.+++.|.++. .+++++ +++++.++. .++.....+.+ ++++.
T Consensus 271 ~G~pigav~~-~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~----~~~~~~~~~-g~~l~~~l~~l~~~~p~- 343 (421)
T PRK09792 271 GGMPLSGVVG-NANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKE----SLCERANQL-GQRLKNTLIDAKESVPA- 343 (421)
T ss_pred CCCceEEEEE-cHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhh----hHHHHHHHH-HHHHHHHHHHHHHhCCC-
Confidence 7899999999 9999888754332 2567888888444 445443 344444432 33333223333 33343
Q ss_pred cccCCc-eeEEEeecCCcc-cCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 79 CAKSNG-GFYCWADMSGLI-SSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 79 ~~~~~~-g~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
+..+.| |+++|++++..- ..+.......+++.+++ +||.+.+.. ...+.+|+..+. ++++++++++++|.++
T Consensus 344 v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~~-~Gv~i~~~g----~~~~~irl~P~l~i~~~ei~~~~~~l~~~ 418 (421)
T PRK09792 344 IAAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALA-QGLLLLTCG----AYGNVIRFLYPLTIPDAQFDAAMKILQDA 418 (421)
T ss_pred cceecccceEEEEEecCCccCCcchHHHHHHHHHHHH-CCcEEeecC----CCCCEEEEeCCCcCCHHHHHHHHHHHHHH
Confidence 445677 999999997431 11111245678888876 899996421 125789999876 6899999999999988
Q ss_pred HH
Q 042816 156 SQ 157 (163)
Q Consensus 156 ~~ 157 (163)
+.
T Consensus 419 l~ 420 (421)
T PRK09792 419 LS 420 (421)
T ss_pred Hh
Confidence 74
No 152
>PLN02721 threonine aldolase
Probab=99.09 E-value=6.6e-09 Score=79.01 Aligned_cols=133 Identities=14% Similarity=0.211 Sum_probs=88.5
Q ss_pred eEEE-EEecCHHHHHHHHHhhccc--CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCc--ccc
Q 042816 8 RISV-IYSYNNSVLAAAKKLARFS--SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIE--CAK 81 (163)
Q Consensus 8 RiG~-~i~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~--~~~ 81 (163)
++|| ++. ++++++.+....... +++.+.+.++..+.. ++++.++.++. .++++.+.+.|+++ ++. +.+
T Consensus 213 ~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~-~~~~~~l~~~L~~~~~~~~~~~~ 286 (353)
T PLN02721 213 PVGSVIVG-SKSFIRKAKRLRKTLGGGMRQVGVLAAAALVA----LQENVPKLEDD-HKKAKLLAEGLNQIKGLRVNVAA 286 (353)
T ss_pred ceeeEEec-CHHHHHhHHHHHHhcCCCeehhHHHHHHHHHH----HHHHHHHHHHH-HHHHHHHHHHHHhCCCcEEecCC
Confidence 4776 556 899988877666532 233333332222211 13444444444 45678899999988 774 445
Q ss_pred CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHHHHHHHHHHH
Q 042816 82 SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~~~l~~~~~~ 158 (163)
|.++ ++|++++... + .+...+++.|.+ +||.+.|+. ++++|++++ ..++++++++++.|.+++..
T Consensus 287 ~~~~-~~~~~~~~~~---~-~~~~~~~~~L~~-~gi~v~~~~------~~~lR~~~~~~~~~~~i~~~~~~l~~~~~~ 352 (353)
T PLN02721 287 VETN-IVYFDITDGS---R-ITAEKLCKSLEE-HGVLLMPGN------SSRIRVVTHHQISDSDVQYTLSCFQQAALT 352 (353)
T ss_pred ccce-EEEEEccCCc---c-ccHHHHHHHHHh-CCcEEecCC------CceEEEEecCcCCHHHHHHHHHHHHHHhhc
Confidence 5554 6999987520 0 156889999875 999999973 568999997 45889999999999987754
No 153
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=99.08 E-value=3.5e-09 Score=82.72 Aligned_cols=147 Identities=13% Similarity=0.111 Sum_probs=97.3
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhh---c--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLA---R--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG 76 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~---~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 76 (163)
+| +|+|+||+++ ++++++.+.... . .++.+++.|.++...|+.-+. +.+.+..++...+.++.+.+.+++++
T Consensus 265 l~-~G~pig~v~~-~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~ 341 (423)
T TIGR00713 265 IG-GGLPVGAFGG-RREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDE-EGVYTELDELAKRLAEGLSEVLEDTG 341 (423)
T ss_pred hc-CCCceeeeeE-HHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45 7999999999 899999886432 1 246788888887777753210 23566777777788888888888876
Q ss_pred Cccc-cCCceeE-EEeecCCcc-----cCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHH
Q 042816 77 IECA-KSNGGFY-CWADMSGLI-----SSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVM 149 (163)
Q Consensus 77 ~~~~-~~~~g~~-~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~ 149 (163)
+... .+.|+++ +++..+... ...+......+++.|++ +||.+.++ .| +.+|++... +++++++++
T Consensus 342 ~~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~-~~-----~~~~l~~~~-t~~~i~~~~ 413 (423)
T TIGR00713 342 IPHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLD-KGVFLPPS-QF-----EACFLSAAH-TEEDIENTI 413 (423)
T ss_pred CCeEEEeeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHHH-CCeEEecC-Cc-----cceeeECCC-CHHHHHHHH
Confidence 5542 2344444 334432110 00000123467878886 89998754 22 347888774 899999999
Q ss_pred HHHHHHHHHh
Q 042816 150 ERIRRISQTC 159 (163)
Q Consensus 150 ~~l~~~~~~~ 159 (163)
++|.+++.++
T Consensus 414 ~~l~~~l~~~ 423 (423)
T TIGR00713 414 EAAEEVFAEL 423 (423)
T ss_pred HHHHHHHhhC
Confidence 9999988653
No 154
>PRK07179 hypothetical protein; Provisional
Probab=99.03 E-value=1.7e-08 Score=78.49 Aligned_cols=140 Identities=19% Similarity=0.110 Sum_probs=91.4
Q ss_pred ceeEEEEEecCHHHHHHHHHhhcc---cCCChHHHHH-HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Q 042816 6 GFRISVIYSYNNSVLAAAKKLARF---SSVSAPSQNL-LVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAK 81 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~~~---~~~s~~~q~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~ 81 (163)
|.|+||+++ ++++++.+.....+ .++..+.+.+ +...++.- ...+..++.+.++++++.+.|+++|+++.
T Consensus 254 g~~~G~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~aa~~aal~~~----~~~~~~~~~l~~~~~~l~~~L~~~g~~v~- 327 (407)
T PRK07179 254 AGRAGIITC-PRELAEYVPFVSYPAIFSSTLLPHEIAGLEATLEVI----ESADDRRARLHANARFLREGLSELGYNIR- 327 (407)
T ss_pred hccCeEEEe-CHHHHHHHHHhCcCeeeCCCCCHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHHHHcCCCCC-
Confidence 348999999 88988888765542 2232333332 22333321 22345678899999999999998888776
Q ss_pred CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCC-CCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHHHh
Q 042816 82 SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPG-SSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg-~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~ 159 (163)
+. +.++++.++.. .+...+.+.|.+ +||.+..- .......++++||+++. +++++++++++.|.+++++.
T Consensus 328 ~~-~~i~~l~~~~~------~~~~~~~~~L~~-~GI~~~~~~~p~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~~~~~ 399 (407)
T PRK07179 328 SE-SQIIALETGSE------RNTEVLRDALEE-RNVFGAVFCAPATPKNRNLIRLSLNADLTASDLDRVLEVCREARDEV 399 (407)
T ss_pred CC-CCEEEEEeCCH------HHHHHHHHHHHH-CCceEeeecCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhh
Confidence 34 45667766532 145667777765 89984321 01011235799999974 58899999999999988764
No 155
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=99.03 E-value=9.2e-09 Score=79.79 Aligned_cols=134 Identities=13% Similarity=0.111 Sum_probs=95.1
Q ss_pred CceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc---c
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE---C 79 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~---~ 79 (163)
..+|+||+++ ++++++.+..... .++.+++.|.++...|+.- ++ ....+.++++.+++.+.|++.+.. .
T Consensus 261 g~~~ig~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~l---~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 334 (401)
T PRK00854 261 GFYPVSAVLS-NSEVLGVLKPGQHGSTFGGNPLACAVARAALKVL---TE--EGMIENAAEMGAYFLEGLRSIRSNIVRE 334 (401)
T ss_pred CccCeEEEEE-cHHHHhcccCCCCCCCCCcCHHHHHHHHHHHHHH---HH--cCHHHHHHHHHHHHHHHHHhhccCceEE
Confidence 3479999999 8999888764333 2467888898888888642 22 235677888888899988886422 2
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~~~l~~~~~ 157 (163)
..+.|.++.+.-.+.. .+..++++.|.+ +||.+.+. +.+++|++.. .++++++++++++|.+++.
T Consensus 335 ~~g~g~~~~i~~~~~~------~~~~~~~~~L~~-~GV~v~~~------~~~~lR~~p~~~~t~e~i~~~i~~l~~~l~ 400 (401)
T PRK00854 335 VRGRGLMLAVELEPEA------GGARQYCEALKE-RGLLAKDT------HDHTIRLAPPLVITREQVDWALEQIAKVLA 400 (401)
T ss_pred EeccceEEEEEEecCc------hhHHHHHHHHHH-CCeEEecC------CCCEEEEeCCcccCHHHHHHHHHHHHHHhh
Confidence 3455666555333321 156789999887 79999752 2479999974 3488999999999998763
No 156
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=99.01 E-value=1.5e-08 Score=79.17 Aligned_cols=151 Identities=13% Similarity=0.131 Sum_probs=101.1
Q ss_pred CCCCcee------EEEEEecCHHHHHHHHHhhc----cc---CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHH
Q 042816 2 LSLPGFR------ISVIYSYNNSVLAAAKKLAR----FS---SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKF 68 (163)
Q Consensus 2 ~~~~G~R------iG~~i~~~~~~~~~~~~~~~----~~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 68 (163)
+.|+|+| .||++++++++++.+++... +. +.+.....+++..|.+.. + .+...+.++ +++++
T Consensus 229 ~~mS~~K~~~~~~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~--~--~~~l~~~~~-~r~~l 303 (431)
T cd00617 229 CTMSAKKDGLVNIGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAV--E--EDYLRHRVE-QVRYL 303 (431)
T ss_pred EEEEeecCCCCccceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHHHHHhcc--c--HHHHHHHHH-HHHHH
Confidence 3567887 66999944579998876432 11 223333344444664421 1 133444444 45999
Q ss_pred HHHhhhcCCccccCCceeEEEeecCCccc---CCChhhHHHHHHHHHHhcCeEEcC-CCC-CC--CC-------CCceEE
Q 042816 69 VAGLRQLGIECAKSNGGFYCWADMSGLIS---SYSEKGELELWDKLLNVAKVNVTP-GSS-CH--CI-------EPGWFS 134 (163)
Q Consensus 69 ~~~l~~~g~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~gi~v~p-g~~-f~--~~-------~~~~iR 134 (163)
.+.|++.|+.+..|.||+++|++++...+ ...+ ++..|+.+|+++.||.+.. |+. ++ .. ..+.+|
T Consensus 304 ~~~L~~~G~~v~~P~Ggh~v~~d~~~~~~~~~~~~~-~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~r 382 (431)
T cd00617 304 GDRLDEAGVPIVEPAGGHAVFIDAREFLPHIPQEQF-PAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELELVR 382 (431)
T ss_pred HHHHHHCCCCccCCCcceEEEEEhHHhcCCCCcccC-cHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccceeE
Confidence 99999999999999999999999886431 1122 6899999999989999764 542 11 11 147899
Q ss_pred EEEec--CChhHHHHHHHHHHHHHHH
Q 042816 135 FSFTL--LTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 135 i~~~~--~~~~~l~~~~~~l~~~~~~ 158 (163)
+++.. -+.+.++...+.|.++.++
T Consensus 383 l~~prr~~t~~~~~~~~~~~~~~~~~ 408 (431)
T cd00617 383 LAIPRRVYTQDHMDYVAAAVIALYER 408 (431)
T ss_pred EeccccccCHHHHHHHHHHHHHHHhh
Confidence 99964 2667888888888877765
No 157
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=99.01 E-value=3.3e-08 Score=77.08 Aligned_cols=147 Identities=10% Similarity=0.047 Sum_probs=93.9
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhccc--CCC-hHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLARFS--SVS-APSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~~~--~~s-~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
++|.|.||++++++++++.+.+..... +.+ ...+.++...+..- +.+.++...+.++++++++.+.|++.|+++.
T Consensus 230 l~g~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 307 (416)
T PRK00011 230 LRGPRGGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEA--LEPEFKEYAQQVVKNAKALAEALAERGFRVV 307 (416)
T ss_pred CCCCCceEEEeCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHhCCCeee
Confidence 689999999994478998887766532 222 22222222222211 1344677888899999999999998888765
Q ss_pred c-CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCC-CCC---CCCCceEEEEEe-----cCChhHHHHHHH
Q 042816 81 K-SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGS-SCH---CIEPGWFSFSFT-----LLTEKDIHVVME 150 (163)
Q Consensus 81 ~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~-~f~---~~~~~~iRi~~~-----~~~~~~l~~~~~ 150 (163)
+ +..++++|+.++... .+..++.+.|. ++||.+.++. .+. ...+..+|++.. .++.++++..++
T Consensus 308 ~~~~~~~~~~i~~~~~~-----~~~~~~~~~L~-~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~ 381 (416)
T PRK00011 308 SGGTDNHLVLVDLRSKG-----LTGKEAEAALE-EANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAE 381 (416)
T ss_pred ecCCCCeEEEEeCcccC-----CCHHHHHHHHH-HcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHHHH
Confidence 3 123488899986320 14566777665 4899998542 221 112567998642 135788888888
Q ss_pred HHHHHHHH
Q 042816 151 RIRRISQT 158 (163)
Q Consensus 151 ~l~~~~~~ 158 (163)
.|.+++..
T Consensus 382 ~l~~~~~~ 389 (416)
T PRK00011 382 LIADVLDN 389 (416)
T ss_pred HHHHHHhc
Confidence 88877654
No 158
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=99.01 E-value=4.7e-09 Score=82.57 Aligned_cols=140 Identities=13% Similarity=0.078 Sum_probs=93.1
Q ss_pred CCCCceeEEEEEecCHHHHHHH----------------------------HHhhccc--CCChHHH-HHHHHhcC-ChHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAA----------------------------KKLARFS--SVSAPSQ-NLLVSMLS-DTKF 49 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~----------------------------~~~~~~~--~~s~~~q-~~~~~~l~-~~~~ 49 (163)
|++.|.|+||+.+ ++++++.+ +...... +.+...| .++...+. .+
T Consensus 270 ~~~~Gpg~G~l~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~-- 346 (447)
T PRK00451 270 LSFGGPYLGFFAT-RKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLLG-- 346 (447)
T ss_pred CCCCCCCchHHHh-hHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHHHHHHC--
Confidence 4678999999999 88887763 1111111 2222334 23332222 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc-CCccccCCceeEEE--eecCCcccCCChhhHHHHHHHHHHhcCeE-EcCCCCC
Q 042816 50 VQKFININRERLRRLYVKFVAGLRQL-GIECAKSNGGFYCW--ADMSGLISSYSEKGELELWDKLLNVAKVN-VTPGSSC 125 (163)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~gi~-v~pg~~f 125 (163)
+..+++..+.+.++++++.+.|+++ |+++. .+++|.+ ++++. +..+++++|++ +||. ..++..|
T Consensus 347 -~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~--~~~~~~~~~v~~~~--------~~~~~~~~L~~-~gi~~~~~~~~~ 414 (447)
T PRK00451 347 -PEGLRELAEQNHQKAHYLAERLAEIGGVELF--DGPFFNEFVVRLPK--------PAEEVNEALLE-KGILGGYDLGRY 414 (447)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhcCCEEec--CCCeEEEEEEecCC--------CHHHHHHHHHh-cCCCCCcccccc
Confidence 3457888999999999999999998 67775 4455544 55542 56889999987 6666 3566666
Q ss_pred CCCCCceEEEEEec-CChhHHHHHHHHHHHHH
Q 042816 126 HCIEPGWFSFSFTL-LTEKDIHVVMERIRRIS 156 (163)
Q Consensus 126 ~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~ 156 (163)
....++++|+++.. .++++++..++.|.+++
T Consensus 415 ~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 415 YPELGNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred cCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 53335799999963 37888888888887654
No 159
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=99.01 E-value=2.4e-08 Score=77.35 Aligned_cols=145 Identities=19% Similarity=0.204 Sum_probs=95.6
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhh---------------------cc--cCCChHHHHHHHHhcCChHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLA---------------------RF--SSVSAPSQNLLVSMLSDTKFVQKFININR 58 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~---------------------~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~ 58 (163)
||.+| +||+++ ++++++.+.... .+ .+++.+...++..+++--. +.-+++..
T Consensus 221 ~gp~G--~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~--~~g~~~i~ 295 (398)
T TIGR03392 221 YGPTG--IGVLYG-KTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLT--DIDIAAAE 295 (398)
T ss_pred cCCCc--eEEEEE-cHHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHH--HhCHHHHH
Confidence 56565 899999 888877663211 01 1334434444444443210 11234566
Q ss_pred HHHHHHHHHHHHHhhhc-CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC------CCCc
Q 042816 59 ERLRRLYVKFVAGLRQL-GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC------IEPG 131 (163)
Q Consensus 59 ~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~------~~~~ 131 (163)
++..+.++++.+.|+++ |++...+..+..+++.++.. +..++.+.|.+ +||.|.+|..+.. ..++
T Consensus 296 ~~~~~l~~~l~~~l~~l~g~~~~~~~~~~i~~~~~~~~-------~~~~l~~~L~~-~gI~v~~g~~~~~~~~~~~g~~~ 367 (398)
T TIGR03392 296 AWSVSLADLAEERLAQLPGFRSFRCPGSSLLAFDFAGV-------HHSDLAALLAE-SGIALRAGQHCAQPLMAALGVSG 367 (398)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEeCCCCCcEEEEEeCCc-------CHHHHHHHHHh-CCEEEecCccchHHHHHHhCCCC
Confidence 77777888888888887 77766544555666666642 56788887765 8999999986531 1257
Q ss_pred eEEEEEec-CChhHHHHHHHHHHHHHHHh
Q 042816 132 WFSFSFTL-LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 132 ~iRi~~~~-~~~~~l~~~~~~l~~~~~~~ 159 (163)
++|+|+.. .+.++++..++.|.++++.+
T Consensus 368 ~iRvS~~~~~t~~ei~~l~~~l~~~~~~~ 396 (398)
T TIGR03392 368 TLRASFAPYNTQQDVDALVDAVGAALELL 396 (398)
T ss_pred EEEEEeeccCCHHHHHHHHHHHHHHHHHh
Confidence 99999953 38889999999999887764
No 160
>PRK02948 cysteine desulfurase; Provisional
Probab=98.95 E-value=8.7e-09 Score=79.37 Aligned_cols=146 Identities=15% Similarity=0.203 Sum_probs=98.1
Q ss_pred CCCCceeEEEEEecCHHH-HHHHHH----hh--cccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042816 2 LSLPGFRISVIYSYNNSV-LAAAKK----LA--RFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ 74 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~-~~~~~~----~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (163)
||.+| +|++++ ++++ ...+.. .. .+++++.+.+.++..+++.. .+++++.++++.+.++++.+.|++
T Consensus 202 ~gp~G--~G~l~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~---~~~~~~~~~~~~~~~~~l~~~L~~ 275 (381)
T PRK02948 202 YGPKG--VGAVYI-NPQVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAENI---LKNMQEESLRFKELRSYFLEQIQT 275 (381)
T ss_pred CCCCc--EEEEEE-cCCCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67778 799988 5553 111110 00 13578888888888888753 356788899999999999999999
Q ss_pred cCCccccCCceeEEEe-----ecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCC----CCCC-------------CCce
Q 042816 75 LGIECAKSNGGFYCWA-----DMSGLISSYSEKGELELWDKLLNVAKVNVTPGSS----CHCI-------------EPGW 132 (163)
Q Consensus 75 ~g~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~----f~~~-------------~~~~ 132 (163)
.|+++..+...-+.+. .++. .+..++...|. ++||.|.+|.. |..+ ..++
T Consensus 276 ~~~~v~~~~~~~~~~~~i~~~~~~~-------~~~~~~~~~l~-~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~ 347 (381)
T PRK02948 276 LPLPIEVEGHSTSCLPHIIGVTIKG-------IEGQYTMLECN-RRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQF 347 (381)
T ss_pred CCCCEEEeCCCccCcCCEEEEEeCC-------CCHHHHHHhcc-cCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCce
Confidence 8876654321111111 1221 14566777765 58999999874 2110 1479
Q ss_pred EEEEEec-CChhHHHHHHHHHHHHHHHhhh
Q 042816 133 FSFSFTL-LTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 133 iRi~~~~-~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
+|||+.. .++++++..++.|.++++.+.+
T Consensus 348 lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 377 (381)
T PRK02948 348 VRFSFGQQTTKDQIDTTIHALETIGNQFYR 377 (381)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 9999974 3789999999999998876543
No 161
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=98.94 E-value=6.6e-08 Score=75.87 Aligned_cols=149 Identities=7% Similarity=-0.034 Sum_probs=90.8
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChH--HHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTK--FVQKFININRERLRRLYVKFVAGLRQLGI 77 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 77 (163)
+| +|+++|++++ ++++.+.+..... .++.+++.+.++...|+.-+ .+.++++++.+.++++.+.+. ..+.+
T Consensus 278 lg-~G~pigav~~-~~~i~~~~~~~~~~~T~~~np~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~---~~~~~ 352 (433)
T PRK08117 278 IA-SGLPLSAVVA-SKELMEQWPLGSHGTTFGGNPVACAAALATLEVIKEEKLLDNANEMGAYALERLEVLK---EKHPV 352 (433)
T ss_pred cc-CCCcceeEEE-cHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH---hcCCc
Confidence 45 7899999999 8999888754332 24568888887777775321 112333333333333332221 12233
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~~~l~~~~ 156 (163)
....+..|+++++++...-+.+.......+.+.+++ +||.+.|. + ...+.+|++.+ .++++++++++++|.+++
T Consensus 353 ~~~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~---g-~~~~~lRl~p~~~~t~~~i~~~~~~l~~~l 427 (433)
T PRK08117 353 IGDVRGIGLMIGIEIVDPDGEPDGDAVEKILDKCLE-KGLLFYLC---G-NAGNVLRMIPPLTVTKEEIDEGLDILDEAL 427 (433)
T ss_pred eeeeecCCcEEEEEEecCCCCcchHHHHHHHHHHHH-CCCEEeec---C-CCCCEEEEeCCccCCHHHHHHHHHHHHHHH
Confidence 233445567777777432111111234567777766 89998763 1 12579999963 359999999999999998
Q ss_pred HHhh
Q 042816 157 QTCK 160 (163)
Q Consensus 157 ~~~~ 160 (163)
.++.
T Consensus 428 ~~~~ 431 (433)
T PRK08117 428 TEYE 431 (433)
T ss_pred HHHh
Confidence 7764
No 162
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=98.92 E-value=3.1e-08 Score=76.87 Aligned_cols=136 Identities=15% Similarity=0.157 Sum_probs=92.3
Q ss_pred CceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-----C
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG-----I 77 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-----~ 77 (163)
.|+++||+++ ++++++.+..... .++.+++.+.++...|+.- ++ +...+.++++.+++.+.|++.+ +
T Consensus 252 gG~pigav~~-~~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~---~~--~~l~~~~~~~~~~l~~~L~~l~~~~~~~ 325 (397)
T TIGR03246 252 GGFPIGAMLT-TTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLV---NT--PELLAGVKQRHDLFVDGLEKINARYNVF 325 (397)
T ss_pred CCcceeEEEE-cHHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHH---hh--ccHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 6999999999 8999888864422 2456778888777777532 11 3456777778888888887753 1
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRIS 156 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~ 156 (163)
...++.| .++-+.+.... ......+++.|++ +||.+.+. + ++++|++.+. ++++++++++++|.+++
T Consensus 326 ~~vrg~G-~~~~i~~~~~~----~~~~~~~~~~l~~-~Gv~~~~~---g---~~~lR~~p~~~~t~~~i~~~~~~l~~~l 393 (397)
T TIGR03246 326 SEIRGKG-LLIGAVLTEAY----QGKAKQFVNAAAE-EGVIALIA---G---PNVVRFAPSLVISDDDIDEGLARFERAI 393 (397)
T ss_pred EeeecCc-eEEEEEEcCch----hhHHHHHHHHHHH-CCeEEeec---C---CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 2223344 33444443210 0146788888887 89998762 2 4789996543 48999999999999988
Q ss_pred HH
Q 042816 157 QT 158 (163)
Q Consensus 157 ~~ 158 (163)
.+
T Consensus 394 ~~ 395 (397)
T TIGR03246 394 EQ 395 (397)
T ss_pred HH
Confidence 65
No 163
>PLN02409 serine--glyoxylate aminotransaminase
Probab=98.91 E-value=1.2e-07 Score=73.68 Aligned_cols=147 Identities=13% Similarity=0.065 Sum_probs=105.2
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--------------------ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--------------------FSSVSAPSQNLLVSMLSDTKFVQKFININRERL 61 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--------------------~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 61 (163)
|+.|. ++||+++ ++++++.+..... ..+++...+.++.++++.-. +.-+++.++++
T Consensus 203 l~~P~-G~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~--~~G~e~i~~~~ 278 (401)
T PLN02409 203 LSLPT-GLGIVCA-SPKALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIF--EEGLENVIARH 278 (401)
T ss_pred cCcCC-CcceeEE-CHHHHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHH--HhhHHHHHHHH
Confidence 34433 7999999 8888887754221 12445555666666665321 33467888999
Q ss_pred HHHHHHHHHHhhhcCCccccCC----ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEE
Q 042816 62 RRLYVKFVAGLRQLGIECAKSN----GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSF 137 (163)
Q Consensus 62 ~~~~~~l~~~l~~~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~ 137 (163)
++..+++.+.|++.|+++..++ .+...|+.+|+.+ +..++.+.|++++||.+.+|..- .....+||+.
T Consensus 279 ~~l~~~l~~~L~~~g~~~~~~~~~~~s~~v~~~~~p~~~------~~~~l~~~l~~~~~i~i~~G~~~--~~~~~~Rig~ 350 (401)
T PLN02409 279 ARLGEATRLAVEAWGLKLCTKKPEWRSDTVTAVVVPEGI------DSAEIVKNAWKKYNLSLGLGLNK--VAGKVFRIGH 350 (401)
T ss_pred HHHHHHHHHHHHHcCCeeccCChhhcccceEEEeCCCCC------CHHHHHHHHHHhCCEEEEcCCCc--ccCCEEEEcC
Confidence 9999999999988887766542 2234567777654 67788888888789999998742 2367899998
Q ss_pred ec-CChhHHHHHHHHHHHHHHHhh
Q 042816 138 TL-LTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 138 ~~-~~~~~l~~~~~~l~~~~~~~~ 160 (163)
.. .+.+++...+..|.+++.++.
T Consensus 351 ~g~~~~~~~~~~~~~~~~~l~~~g 374 (401)
T PLN02409 351 LGNVNELQLLGALAGVEMVLKDVG 374 (401)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcC
Confidence 54 588899999999999887754
No 164
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=98.88 E-value=1.9e-07 Score=71.59 Aligned_cols=138 Identities=14% Similarity=0.074 Sum_probs=92.4
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhccc----------CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARFS----------SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAG 71 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~~----------~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 71 (163)
|+++|.++|++++.++++++.+.....+. +.+.....++...++.-. +.-+++..+...++.+++.+.
T Consensus 221 ~~~a~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~--~~g~~~~~~~~~~~~~~l~~~ 298 (371)
T PRK13520 221 MGLAPIPAGGILFRDESYLDALAVDTPYLTSKKQATLTGTRSGAGVAATYAVMKYLG--REGYRKVVERCMENTRWLAEE 298 (371)
T ss_pred ccCccCCceEEEEcCHHHHHhhcccCccccCCCCcceEeeccChHHHHHHHHHhhhc--HhHHHHHHHHHHHHHHHHHHH
Confidence 57788999988875777777764222111 123334444444444211 122466778888889999999
Q ss_pred hhhcCCc-cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHH
Q 042816 72 LRQLGIE-CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVM 149 (163)
Q Consensus 72 l~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~ 149 (163)
|++.|++ +..|..+ ++.++++ +..++.+.|.+ +||.|.++. .++.+|+|+.. .++++++.++
T Consensus 299 L~~~g~~~~~~~~~~-~v~~~~~---------~~~~v~~~L~~-~gi~v~~~~-----~~~~iRis~~~~~t~edi~~~~ 362 (371)
T PRK13520 299 LKERGFEPVIEPVLN-IVAFDDP---------NPDEVREKLRE-RGWRVSVTR-----CPEALRIVCMPHVTREHIENFL 362 (371)
T ss_pred HHhCCCEEecCCCce-EEEEecC---------CHHHHHHHHHH-CCceeccCC-----CCCEEEEEEECCCCHHHHHHHH
Confidence 9888887 5556655 4455665 35788888876 799998753 25689999863 3788999999
Q ss_pred HHHHHHHH
Q 042816 150 ERIRRISQ 157 (163)
Q Consensus 150 ~~l~~~~~ 157 (163)
+.|.+++.
T Consensus 363 ~~l~~~~~ 370 (371)
T PRK13520 363 EDLKEVKK 370 (371)
T ss_pred HHHHHHhh
Confidence 99987654
No 165
>PLN02624 ornithine-delta-aminotransferase
Probab=98.87 E-value=1.2e-07 Score=75.22 Aligned_cols=145 Identities=10% Similarity=0.082 Sum_probs=89.7
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChH--HHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTK--FVQKFININRERLRRLYVKFVAGLRQLGI 77 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 77 (163)
+|.+++++|++++ ++++++.+...... ++.+++.+.++...|+.-. .+.++..++.+.++++.+.+.+.+... +
T Consensus 295 lggG~~pigav~~-~~~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~~~~l~~~~~~~~~~l~~~L~~l~~~~~~~-i 372 (474)
T PLN02624 295 LGGGVIPVSAVLA-DKDVMLCIKPGEHGSTFGGNPLASAVAMAALQVVQDEKLAERSAKLGQELRDQLQKIQKQFPKL-I 372 (474)
T ss_pred ccCCCCcceeeee-cHHHHhHhccCCcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCc-e
Confidence 5777799999999 88888777543332 3578888887777765311 012333444444444444333322211 3
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~~~l~~~~ 156 (163)
....+.|.++. +.++... .+...+.++++.|.+ +||.+.|+. ++++||+.. .++++++++++++|.+++
T Consensus 373 ~~vrg~G~~~~-i~l~~~~--~~~~~a~~~~~~L~e-~GV~v~p~~------~~~lR~~p~l~~t~e~id~~l~~L~~~l 442 (474)
T PLN02624 373 KEVRGRGLLNA-VVLNSPK--LGPVSAYDVCLKLKE-RGLLAKPTH------DTIIRLAPPLSISEDELQECSKALSDVL 442 (474)
T ss_pred EEEEeeEEEEE-EEecCCC--cChHHHHHHHHHHHh-CCeEEecCC------CCEEEEECCccCCHHHHHHHHHHHHHHH
Confidence 33445666554 3343210 001246788888766 899998852 578999863 358999999999999887
Q ss_pred HH
Q 042816 157 QT 158 (163)
Q Consensus 157 ~~ 158 (163)
..
T Consensus 443 ~~ 444 (474)
T PLN02624 443 EH 444 (474)
T ss_pred HH
Confidence 64
No 166
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=98.86 E-value=1.1e-07 Score=74.18 Aligned_cols=137 Identities=9% Similarity=0.051 Sum_probs=93.2
Q ss_pred ceeEEEEEecCHHHHHHHHHhhc--ccCCChHHH---HHHHH-hcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 042816 6 GFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQ---NLLVS-MLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIEC 79 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q---~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 79 (163)
|+++|++++ ++++ +.+..... .++.+++.. .++.. +++++.+ .++++++.+.++++.+.+.+.+... ..
T Consensus 269 G~pigav~~-~~~~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l-~~~~~~~g~~l~~~l~~l~~~~~~~--~~ 343 (412)
T TIGR02407 269 GLPLALTLI-KPEL-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDAF-EKAVQRKSEIIQERLDRIVAEYPEL--IK 343 (412)
T ss_pred ccceeEEEE-chhh-hccCCCccCCCCCccHHHHHHHHHHHHHHhcccHH-HHHHHHHHHHHHHHHHHHHhhCCCc--eE
Confidence 899999999 7775 54432211 234555532 23333 4666554 6777888888887777666655322 24
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~ 158 (163)
.....|+++|++++... ....+.+.+.+ +||.+.+...+ .+.+|++... +++++++++++.|.+++++
T Consensus 344 ~vrg~Gl~~~l~l~~~~------~~~~~~~~~~~-~Gv~v~~~~~~----~~~lr~~p~l~~t~~~i~~~~~~l~~~l~~ 412 (412)
T TIGR02407 344 QVRGRGLMQGIECGDGD------LAGKIAKAAFE-NGLIIETSGPN----DEVIKLLPPLTIDEETLQQGLDILEQAVEE 412 (412)
T ss_pred eeecceeEEEEEecChH------HHHHHHHHHHH-CCCEEeccCCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHhC
Confidence 45567899999997531 45678888876 89999874221 4679998865 5889999999999998753
No 167
>PRK07505 hypothetical protein; Provisional
Probab=98.86 E-value=1.4e-07 Score=73.31 Aligned_cols=141 Identities=10% Similarity=0.029 Sum_probs=84.1
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhccc----CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARFS----SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGI 77 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~~----~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 77 (163)
||++| ||+++.++++++.+......+ ++++++..++...++-.. ++++.+.++.++++...+.+.+...
T Consensus 253 ~~~~G---g~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~-- 325 (402)
T PRK07505 253 FGASG---GVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIHL--SEELDQLQQKLQNNIALFDSLIPTE-- 325 (402)
T ss_pred hhccC---eEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHhc--
Confidence 55665 888754788999988765532 344556666655554100 2233444555555555443332211
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-CCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI-EPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
....+.+..++.++.. .++.++.+.|++ +||.+.|+..+..+ +++++||++.. +++++++++++.|.++
T Consensus 326 --~~g~~~~i~~~~~~~~------~~~~~~~~~l~~-~Gi~v~~~~~p~~~~~~~~lRi~~~~~~t~eei~~~~~~l~~~ 396 (402)
T PRK07505 326 --QSGSFLPIRLIYIGDE------DTAIKAAKQLLD-RGFYTSPVFFPVVAKGRAGLRIMFRASHTNDEIKRLCSLLKEI 396 (402)
T ss_pred --CCCCCCCEEEEEeCCH------HHHHHHHHHHHH-CCCeEeeecCCCCCCCCceEEEecCccCCHHHHHHHHHHHHHH
Confidence 1122222223333321 146788888886 89999998433322 24799999973 4889999999999988
Q ss_pred HHH
Q 042816 156 SQT 158 (163)
Q Consensus 156 ~~~ 158 (163)
+.+
T Consensus 397 l~~ 399 (402)
T PRK07505 397 LDE 399 (402)
T ss_pred HHh
Confidence 754
No 168
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=98.85 E-value=1.6e-07 Score=72.93 Aligned_cols=143 Identities=17% Similarity=0.260 Sum_probs=93.0
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc---------------------c--cCCChHHHHHHHHhcCChHHHHH-HHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR---------------------F--SSVSAPSQNLLVSMLSDTKFVQK-FININ 57 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~---------------------~--~~~s~~~q~~~~~~l~~~~~~~~-~~~~~ 57 (163)
+|.+| +||+++ ++++++.+..... + .+++.....++..+++.- .+ -.++.
T Consensus 223 ~gp~G--~g~l~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~---~~~g~~~~ 296 (403)
T TIGR01979 223 YGPTG--IGVLYG-KEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYL---EAIGLENI 296 (403)
T ss_pred cCCCC--ceEEEE-chHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHH---HHhCHHHH
Confidence 56566 999999 7887776531100 1 123444455555555321 12 14567
Q ss_pred HHHHHHHHHHHHHHhhhc-CCccccCC-----ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC----
Q 042816 58 RERLRRLYVKFVAGLRQL-GIECAKSN-----GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC---- 127 (163)
Q Consensus 58 ~~~~~~~~~~l~~~l~~~-g~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~---- 127 (163)
+++..+.++.+.+.|+.+ |+++..|. +++..+ .++.. +..++.+.|. ++||.+.+|..+..
T Consensus 297 ~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~-~~~~~-------~~~~~~~~L~-~~gI~v~~g~~~~~~~~~ 367 (403)
T TIGR01979 297 EAHEHELTAYALERLGEIPGLRIYGPRDAEDRGGIISF-NVEGV-------HPHDVGTILD-EEGIAVRSGHHCAQPLMR 367 (403)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCceEEE-EeCCc-------CHHHHHHHHh-hCCEEEcchhhhhHHHHH
Confidence 788888888999999887 78877553 555444 56531 4567777665 58999998763311
Q ss_pred --CCCceEEEEEec-CChhHHHHHHHHHHHHHHHh
Q 042816 128 --IEPGWFSFSFTL-LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 128 --~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~ 159 (163)
..++++|||+.. .+.++++..++.|+++++.+
T Consensus 368 ~~~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~~~ 402 (403)
T TIGR01979 368 RFGVPATCRASFYIYNTEEDIDALVEALKKVRKFF 402 (403)
T ss_pred HhCCCCEEEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence 125799999973 37789999999998877654
No 169
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=98.82 E-value=1.7e-07 Score=72.85 Aligned_cols=137 Identities=17% Similarity=0.157 Sum_probs=93.2
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc-
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE- 78 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~- 78 (163)
++..++|+||+++ ++++++.+..... .++.+++.|.++...|+.- ++ +...+..++..+++.+.|++++..
T Consensus 257 l~~g~~~ig~v~~-~~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i---~~--~~l~~~~~~~~~~~~~~L~~l~~~~ 330 (401)
T TIGR01885 257 LSGGVYPVSAVLA-DDDVMLTIKPGEHGSTYGGNPLACAVAVAALEVL---EE--EKLAENAEKLGEIFRDQLKKLPKPI 330 (401)
T ss_pred ccCCCCCcEEEEE-cHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHhccCCc
Confidence 4556699999999 8999888765222 2456788888887777542 21 123455666678888888877422
Q ss_pred --cccCCceeEE-EeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHHHHHHH
Q 042816 79 --CAKSNGGFYC-WADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVMERIRR 154 (163)
Q Consensus 79 --~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~~~l~~ 154 (163)
..++.|.++. +++.+.. + .+..++++.|.+ +||.+.|+. ++.+||+.. .++++++++++++|.+
T Consensus 331 ~~~~~g~g~~~~i~~~~~~~----~-~~~~~l~~~l~~-~Gv~v~~~~------~~~lRi~p~l~~t~~~i~~~l~~l~~ 398 (401)
T TIGR01885 331 ITEVRGRGLLNAIVIDESKT----G-RTAWDLCLKLKE-KGLLAKPTH------GNIIRLAPPLVITEEQLDEGLEIIKK 398 (401)
T ss_pred eeEEeecCeeEEEEeccCcc----h-hHHHHHHHHHHh-CCEEEEecC------CCEEEEeCCccCCHHHHHHHHHHHHH
Confidence 2345666654 3332210 0 156788998876 899998742 578999974 3588999999999988
Q ss_pred HH
Q 042816 155 IS 156 (163)
Q Consensus 155 ~~ 156 (163)
++
T Consensus 399 ~l 400 (401)
T TIGR01885 399 VI 400 (401)
T ss_pred Hh
Confidence 75
No 170
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=98.80 E-value=4.6e-07 Score=68.53 Aligned_cols=132 Identities=14% Similarity=0.072 Sum_probs=88.1
Q ss_pred CCCCceeEEE-EEecCHHHHHHHHHhhcc----cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 042816 2 LSLPGFRISV-IYSYNNSVLAAAKKLARF----SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG 76 (163)
Q Consensus 2 ~~~~G~RiG~-~i~~~~~~~~~~~~~~~~----~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 76 (163)
||+|| |+ +++ ++++++.+...... ++.+.+.|.++...|++..+ .+..+.+.++++++.+.|+++|
T Consensus 198 ~~~~~---g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~-----~~~~~~~~~~~~~l~~~L~~~~ 268 (338)
T cd06502 198 GGAPV---GAVVVG-NRDFIARARRRRKQAGGGMRQSGFLAAAGLAALENDLW-----LRRLRHDHEMARRLAEALEELG 268 (338)
T ss_pred CCCcc---ceEEEC-CHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcCchH-----HHHHHHHHHHHHHHHHHHHhcC
Confidence 67776 54 456 88999988776542 34677788888888876532 2344566677889999999988
Q ss_pred CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHH--hcCeEEcCCCCCCCCCCceEEEEEecC-ChhHHHHHHHHHH
Q 042816 77 IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLN--VAKVNVTPGSSCHCIEPGWFSFSFTLL-TEKDIHVVMERIR 153 (163)
Q Consensus 77 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~gi~v~pg~~f~~~~~~~iRi~~~~~-~~~~l~~~~~~l~ 153 (163)
+.+.++.+++.+. .++... .....+.+.+.+ ++|+.+.+.. .+++|++.... ++++++++++.+.
T Consensus 269 ~~~~~~~~~~~~v-~~~~~~-----~~~~~l~~~l~~~~~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~ 336 (338)
T cd06502 269 GLESEVQTNIVLL-DPVEAN-----AVFVELSKEAIERRGEGVLFYAWG------EGGVRFVTHWDTTEEDVDELLSALK 336 (338)
T ss_pred CCcccccCCeEEE-ecCCcc-----HHHHHHHHHHHHhhhCCEEEEecC------CCeEEEEeecCCCHHHHHHHHHHHh
Confidence 7777777776543 444210 122344444431 3799987742 27899999753 7788998888876
Q ss_pred H
Q 042816 154 R 154 (163)
Q Consensus 154 ~ 154 (163)
+
T Consensus 337 ~ 337 (338)
T cd06502 337 A 337 (338)
T ss_pred c
Confidence 4
No 171
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=98.79 E-value=3.8e-07 Score=71.47 Aligned_cols=146 Identities=8% Similarity=0.068 Sum_probs=96.0
Q ss_pred CceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHH---HHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLL---VSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIEC 79 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 79 (163)
+|+++|++++ ++++.+.+..... .++.+++.+.++ ..+++++.+ .++.+++.+.++++.+.+.+.+... .++
T Consensus 271 ~G~pigav~~-~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~l-~~~~~~~g~~l~~~L~~l~~~~~~i-~~v 347 (425)
T PRK07495 271 GGFPLAAVTG-RAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEEDL-CERANQLGNRLKQRLASLRETVPEI-ADI 347 (425)
T ss_pred CCccceEEEE-cHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhchH-HHHHHHHHHHHHHHHHHHHhhCCCe-eee
Confidence 6899999999 8999887754332 256788888844 444555443 5667777777777766655543211 233
Q ss_pred ccCCceeEEEeecCCcc-cCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLI-SSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~ 157 (163)
... |+++|+++...- ..+...-...+.+.+++ +|+.+.+... ..+.+||.-.. ++++++++++++|.+++.
T Consensus 348 rG~--Gl~~~iel~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~g~----~~~~~r~~Ppl~it~~~id~~~~~l~~~l~ 420 (425)
T PRK07495 348 RGP--GFMNAVEFNDADSGLPSAEFANRVRLKALE-KGLILLTCGV----HGNVIRFLAPITIQDDVFAEALDILEASIL 420 (425)
T ss_pred ecC--ceEEEEEEecCCCCCccHHHHHHHHHHHHH-CCeEEeecCC----CCCEEEEeCCCccCHHHHHHHHHHHHHHHH
Confidence 333 899999985321 01111123467777766 8999875311 13679998643 588999999999999998
Q ss_pred Hhh
Q 042816 158 TCK 160 (163)
Q Consensus 158 ~~~ 160 (163)
+++
T Consensus 421 ~~~ 423 (425)
T PRK07495 421 EAS 423 (425)
T ss_pred HHh
Confidence 765
No 172
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=98.79 E-value=5.1e-07 Score=71.09 Aligned_cols=149 Identities=9% Similarity=0.046 Sum_probs=87.6
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cc
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG-IE 78 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~ 78 (163)
+| +|+|+||+++ ++++++.+..... .++.+++.|.++...|+.-.- ++..++.++.-...++.+.+...++. +.
T Consensus 275 l~-~G~pigav~~-~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~l~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~v~ 351 (443)
T PRK08360 275 LG-GGLPISATIG-RAEIMDSLPPLAHAFTLSGNPVASAAALAVIEEIEE-KNLLKRAEKLGNYTKKRLEEMKKKHELIG 351 (443)
T ss_pred cc-CCceeEEEEE-cHHHHhhhcCCCCCCCCCcCHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence 56 8999999999 8999988865433 246778888877777754210 12222222222222222322222232 22
Q ss_pred cccCCceeEEEeecCCc--ccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGL--ISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
...+. |.++-+++... ...++......+.+.+++ +||.+.+.. .+.+|++.+. +++++++++++++.++
T Consensus 352 ~vrg~-Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~~------~~~lr~~P~l~~t~~~id~~~~~l~~~ 423 (443)
T PRK08360 352 DVRGI-GLMIGVDLVKDRETKERAYEEAAKVVWRAWE-LGLIVTFFS------GNVLRIQPPLTIEKEVLDEGLDILEEA 423 (443)
T ss_pred eeecc-ceEEEEEEecCCcccCccHHHHHHHHHHHHH-CCeEEeecC------CCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 22333 44455555321 001111234678888876 899986531 3679996543 4889999999999999
Q ss_pred HHHhhh
Q 042816 156 SQTCKS 161 (163)
Q Consensus 156 ~~~~~~ 161 (163)
+.++++
T Consensus 424 l~~~~~ 429 (443)
T PRK08360 424 IEDVEE 429 (443)
T ss_pred HHHHHh
Confidence 987653
No 173
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=98.78 E-value=4.2e-07 Score=69.71 Aligned_cols=135 Identities=14% Similarity=0.070 Sum_probs=88.4
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhccc----------CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARFS----------SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAG 71 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~~----------~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 71 (163)
|++++.++|+++..++++++.+.....+. +.+.....++...++.-. +..+++..+.+.++++++.+.
T Consensus 226 ~~~~~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~--~~g~~~~~~~~~~~~~~l~~~ 303 (373)
T TIGR03812 226 MGLSPIPAGGILFRSKSYLKYLSVDAPYLTVKKQATITGTRSGASAAATYAVIKYLG--REGYRKIVAECMENTRYLVEE 303 (373)
T ss_pred cCCCcCCceEEEEeCHHHHhhhcccCcccCCCCCcceEeechhHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHH
Confidence 57788899876643788887764222221 122333444444444311 344577788899999999999
Q ss_pred hhhcCCc-cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHH
Q 042816 72 LRQLGIE-CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVM 149 (163)
Q Consensus 72 l~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~ 149 (163)
|+++|++ +..|..+ ++.+.++. ..++.+.|.+ +||.+.++. .++++|+++.. .++++++..+
T Consensus 304 L~~~g~~~~~~~~~~-~v~~~~~~---------~~~v~~~L~~-~gi~v~~~~-----~~~~iRis~~~~~t~edid~l~ 367 (373)
T TIGR03812 304 LKKIGFEPVIEPVLN-IVAFEVDD---------PEEVRKKLRD-RGWYVSVTR-----CPKALRIVVMPHVTREHIEEFL 367 (373)
T ss_pred HHhCCCeEEcCCCce-EEEEEeCC---------HHHHHHHHHH-CCceeccCC-----CCCEEEEEEECCCCHHHHHHHH
Confidence 9988754 4444444 44456552 3578888876 799998752 25799999974 2778888888
Q ss_pred HHHHH
Q 042816 150 ERIRR 154 (163)
Q Consensus 150 ~~l~~ 154 (163)
+.|.+
T Consensus 368 ~~L~~ 372 (373)
T TIGR03812 368 EDLKE 372 (373)
T ss_pred HHHhh
Confidence 88764
No 174
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=98.77 E-value=4.6e-07 Score=71.35 Aligned_cols=144 Identities=10% Similarity=0.046 Sum_probs=90.2
Q ss_pred CceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc----C-C
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL----G-I 77 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g-~ 77 (163)
.|+++|++++ ++++.+.+..... .++.+++++.++.+.|+.- .+ +...+..+++-+++.+.|+++ + +
T Consensus 292 ~G~Pi~av~~-~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~---~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i 365 (443)
T PRK06058 292 GGLPLSAVTG-RAEIMDAPHPGGLGGTYGGNPVACAAALAAIETI---EE--DDLVARARQIEALMTDRLRALAAEDDRI 365 (443)
T ss_pred CCCccEEEEE-cHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHH---HH--cCHHHHHHHHHHHHHHHHHHHHhhCCcE
Confidence 6899999999 8999888764432 2568889988888887532 11 123344444455555555443 2 2
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRIS 156 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~ 156 (163)
.-.++.|.++.+.-.+.....++..-...+.+.+++ +||.+.|+..|+ +.+|+..+. ++++++++++++|.+++
T Consensus 366 ~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~-~Gv~~~~~~~~~----~~lr~~Ppl~~t~~~i~~~~~~l~~~l 440 (443)
T PRK06058 366 GDVRGRGAMIAIELVKPGTTEPDAELTKALAAAAHA-AGVIVLTCGTYG----NVIRLLPPLVIGDELLREGLDVLEAAL 440 (443)
T ss_pred EeeeccceEEEEEEecCCCCCCcHHHHHHHHHHHHH-CCeEEeccCCCC----CEEEEECCCccCHHHHHHHHHHHHHHH
Confidence 224567766544222211101111124556666666 899999875543 589997442 49999999999999998
Q ss_pred HHh
Q 042816 157 QTC 159 (163)
Q Consensus 157 ~~~ 159 (163)
.++
T Consensus 441 ~~~ 443 (443)
T PRK06058 441 ADL 443 (443)
T ss_pred HhC
Confidence 754
No 175
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=98.72 E-value=8.6e-07 Score=68.19 Aligned_cols=138 Identities=10% Similarity=0.138 Sum_probs=91.8
Q ss_pred CceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCc-c-
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIE-C- 79 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~-~- 79 (163)
++++.||++++++++.+.+...+.. ..++++.|.++...++.- ....+.++++++.+.+.|+++ ++. +
T Consensus 203 ~d~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~l~tl-------~~r~~~~~~~a~~l~~~L~~~p~v~~v~ 275 (366)
T PRK08247 203 NDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGMKTL-------ALRMRQHEENAKAIAAFLNEQPGVTDVL 275 (366)
T ss_pred CceeeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHHHhccCcH-------HHHHHHHHHHHHHHHHHHHhCCCeeEEe
Confidence 5679999999337888888766653 456777888777776642 233335688999999999998 765 4
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHH---------HHHHhcCeEEcCCCCCCC-----------CCCceEEEEEec
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWD---------KLLNVAKVNVTPGSSCHC-----------IEPGWFSFSFTL 139 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---------~l~~~~gi~v~pg~~f~~-----------~~~~~iRi~~~~ 139 (163)
.++.||+|.| ++... .....|.+ .|...+.+.+.|++.+.. ..++-+|+|++-
T Consensus 276 ~P~~gg~~sf-~~~~~------~~~~~~~~~l~~~~~~~slg~~~sl~~~p~~~~~~~~~~~~r~~~gi~~~~~R~svGl 348 (366)
T PRK08247 276 YPGRGGMLSF-RLQDE------EWVNPFLKSLKLITFAESLGGVESFITYPATQTHADIPEEIRIANGVCNRLLRFSVGI 348 (366)
T ss_pred cCCcCcEEEE-EECCH------HHHHHHHHcCCcceEccCCCCCceEEECCcccccccCCHHHHHhcCCCCCeEEEEecc
Confidence 4448999988 56421 11222332 222334567778865532 125789999997
Q ss_pred CChhHHHHHHHHHHHHHHHh
Q 042816 140 LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 140 ~~~~~l~~~~~~l~~~~~~~ 159 (163)
|+.+..++-|.+++.+.
T Consensus 349 ---E~~~dl~~dl~~al~~~ 365 (366)
T PRK08247 349 ---ENVEDLIADLKQAFKQV 365 (366)
T ss_pred ---CCHHHHHHHHHHHHhhc
Confidence 66777777777777653
No 176
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=98.71 E-value=3.7e-07 Score=70.68 Aligned_cols=136 Identities=11% Similarity=0.022 Sum_probs=85.5
Q ss_pred CCceeEEEEEecCHHHHHHHHHh------------------------------hcc-c-CCChHHHHHHHHhcCChHHHH
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKL------------------------------ARF-S-SVSAPSQNLLVSMLSDTKFVQ 51 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~------------------------------~~~-~-~~s~~~q~~~~~~l~~~~~~~ 51 (163)
..|.|+||+.. ++++++.+... ..+ . +.....|.+...+.... +
T Consensus 228 ~Ggp~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~---~ 303 (398)
T cd00613 228 GGGPGAGFFAV-KKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLG---P 303 (398)
T ss_pred CCCCceeEEEE-hhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhC---H
Confidence 34899999999 77877764110 001 1 12233344444333333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCccccCCceeE--EEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCC
Q 042816 52 KFININRERLRRLYVKFVAGLRQLGIECAKSNGGFY--CWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIE 129 (163)
Q Consensus 52 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~ 129 (163)
..+++.++.++++.+++.+.|++++... .+.+.++ ++++++... + .++.++++.|.+ +||.+.+.. ...
T Consensus 304 ~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~v~~~~~~~~---~-~~~~~~~~~L~~-~gi~~~~~~---~~~ 374 (398)
T cd00613 304 EGLKEIAERAHLNANYLAKRLKEVGGVL-PFNGPFFHEFVLRLPPLY---G-IRAEDLAKALID-GGFHAPTMY---LPV 374 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcc-cCCCCeeEEEEEEcCCcc---h-HHHHHHHHhhhh-cCccccccc---cCC
Confidence 4567888999999999999999885433 3344444 566776410 0 267889998876 898864422 123
Q ss_pred CceEEEEEec-CChhHHHHHHHHH
Q 042816 130 PGWFSFSFTL-LTEKDIHVVMERI 152 (163)
Q Consensus 130 ~~~iRi~~~~-~~~~~l~~~~~~l 152 (163)
++.+|++... .++++++.+++.|
T Consensus 375 ~~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 375 DGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHhC
Confidence 5789999864 4778888887653
No 177
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=98.69 E-value=1.2e-06 Score=68.42 Aligned_cols=138 Identities=16% Similarity=0.134 Sum_probs=87.9
Q ss_pred CceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc----C-C
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL----G-I 77 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g-~ 77 (163)
+|+|+||+++ ++++.+.+..... .++.+++.+.++.+.|+.- ++ +...+..+++-+++.+.|++. + +
T Consensus 260 ~G~piga~~~-~~~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~---~~--~~l~~~~~~~g~~l~~~l~~l~~~~~~i 333 (408)
T PRK04612 260 GGFPIGAMLA-GPKVAETMQFGAHGTTFGGNPLAAAVARVALRKL---AS--PQIAANVARQSAALRAGLEALNAEFGVF 333 (408)
T ss_pred CCCceEEEEE-CHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence 7899999999 8888887765433 2567888888888777542 11 123334444444444444432 2 2
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRIS 156 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~ 156 (163)
......| .++-+++.... ......+.+.+.+ +||.+.|. +++.+|+.... ++++++++++++|.+++
T Consensus 334 ~~vrg~G-l~~~i~~~~~~----~~~a~~i~~~l~~-~Gvlv~~~------g~~~lRl~Ppl~it~eeid~~l~~l~~~l 401 (408)
T PRK04612 334 AQVRGRG-LMLGAVLAPAH----AGQAGAILDLAAE-HGLLLLQA------GPDVLRFVPALNLTDAELADGLARLRLAL 401 (408)
T ss_pred eeeeccc-eEEEEEecCch----hhHHHHHHHHHHH-CCeEEeeC------CCCEEEEcCCccCCHHHHHHHHHHHHHHH
Confidence 2334444 45555553210 0135677777766 89999763 24789998643 48899999999999998
Q ss_pred HHhh
Q 042816 157 QTCK 160 (163)
Q Consensus 157 ~~~~ 160 (163)
.++.
T Consensus 402 ~~~~ 405 (408)
T PRK04612 402 ADYV 405 (408)
T ss_pred HHHh
Confidence 7654
No 178
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=98.68 E-value=1.2e-06 Score=67.22 Aligned_cols=143 Identities=13% Similarity=0.147 Sum_probs=82.7
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcccCCC----------hHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARFSSVS----------APSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAG 71 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s----------~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 71 (163)
|+ ++.|+||+++ ++++++.+.+...+++.+ ...+..+...+.. +.+++++..+.. ++.+++.+.
T Consensus 203 l~-~~~~~G~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~---~~~~~~~~~~~~-~~~~~l~~~ 276 (361)
T cd06452 203 MA-ASAPIGVLAT-TEEWADIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFPH---VKERVKRWDEEV-EKARWFVAE 276 (361)
T ss_pred cc-CCCCeEEEEE-CHHHHHHHhccccccccceeeeeccccCchHHHHHHHHHHH---HHHHHHHHHHHH-HHHHHHHHH
Confidence 45 4459999999 899999887766432211 1112222222221 133344444443 345788899
Q ss_pred hhhc-CCcccc--CCceeEEEeecCCccc--CCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHH
Q 042816 72 LRQL-GIECAK--SNGGFYCWADMSGLIS--SYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIH 146 (163)
Q Consensus 72 l~~~-g~~~~~--~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~ 146 (163)
|+++ |+++.. +....++.++.+...- .....+..++.++|++ +||.+. +. ..++++|++....++++++
T Consensus 277 L~~l~g~~v~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~gI~~~----~~-~~~~~~ri~~~g~~~e~~~ 350 (361)
T cd06452 277 LEKIEGIKQLGEKPKNHDLMFFETPSFDEIAKKHKRRGYFLYSELKK-RGIHGI----KP-GLTRYFKLSTYGLTWEQVE 350 (361)
T ss_pred HhcCCCeEEECCCCCCCceEEEEcCCcchhhhhccccchhHHHHHHH-cCceEE----cC-CCceEEEEEecCCCHHHHH
Confidence 9998 887752 2222334455552110 0000123468888876 799953 11 2256899999434889999
Q ss_pred HHHHHHHHHH
Q 042816 147 VVMERIRRIS 156 (163)
Q Consensus 147 ~~~~~l~~~~ 156 (163)
..++.|+++.
T Consensus 351 ~l~~al~~~~ 360 (361)
T cd06452 351 YVVDAFKEIA 360 (361)
T ss_pred HHHHHHHHHh
Confidence 9998887654
No 179
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=98.67 E-value=1.6e-06 Score=68.02 Aligned_cols=142 Identities=10% Similarity=0.055 Sum_probs=86.1
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSML----SDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
+|..|+++|++++ ++++ ..+..... .++.++++..++.+.+ .++.+ .++++++.+.++++.+.+.+ ++
T Consensus 269 l~~~G~pigav~~-~~~i-~~~~~~~~~~T~~gnp~~~aaa~a~l~~~~~~~~l-~~~~~~~g~~l~~~l~~l~~---~~ 342 (425)
T PRK09264 269 ISGYGLPMALVLI-KPEL-DVWKPGEHNGTFRGNNLAFVTATAALEEYWSDDAF-EKEVKAKGELVRERLEEIAA---KY 342 (425)
T ss_pred cCCCccceEEEEE-chhh-hccCCCccCCCCCCCHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHH---hC
Confidence 4445999999999 7776 34322111 2345555544443333 34332 45555555555554444333 22
Q ss_pred C-CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHHHHHH
Q 042816 76 G-IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVMERIR 153 (163)
Q Consensus 76 g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~~~l~ 153 (163)
+ +.......|+++|+.++.. .....+++.+.+ +||.+.|+..+ .+.+|++.. .++++++++++++|.
T Consensus 343 ~~~~~~vrg~Gl~~~i~l~~~------~~~~~l~~~~~~-~Gv~~~~~~~~----~~~lr~~p~l~~t~~ei~~~~~~l~ 411 (425)
T PRK09264 343 PGLGAEVRGRGMMQGIDFGDG------ELAGKIAAEAFE-NGLIIETSGPE----DEVVKLLPPLTIDEEELEEGLDILE 411 (425)
T ss_pred CCceecceecccEEEEEecCh------HHHHHHHHHHHH-CCCEEeccCCC----CCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2 2122334678889998652 145678888876 89999875332 356777754 247899999999999
Q ss_pred HHHHHhh
Q 042816 154 RISQTCK 160 (163)
Q Consensus 154 ~~~~~~~ 160 (163)
+++++..
T Consensus 412 ~~l~~~~ 418 (425)
T PRK09264 412 EAVAEVL 418 (425)
T ss_pred HHHHHHH
Confidence 9887653
No 180
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=98.65 E-value=6e-07 Score=68.92 Aligned_cols=135 Identities=17% Similarity=0.197 Sum_probs=86.8
Q ss_pred eeEEEEEecCHHHHHHHHHhhc---------------------c--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 042816 7 FRISVIYSYNNSVLAAAKKLAR---------------------F--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRR 63 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~~~---------------------~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 63 (163)
.++||+++ ++++++.+..... + .+++.....++..+++.-. +.-++..++...+
T Consensus 206 ~g~g~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~--~~g~~~~~~~~~~ 282 (373)
T cd06453 206 TGIGVLYG-KEELLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLE--KIGMEAIAAHEHE 282 (373)
T ss_pred CCcEEEEE-chHHhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHH--HcCHHHHHHHHHH
Confidence 67899999 8888877654321 0 1233333444444343211 1223667777788
Q ss_pred HHHHHHHHhhhc-CCccccCC--ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC------CCCceEE
Q 042816 64 LYVKFVAGLRQL-GIECAKSN--GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC------IEPGWFS 134 (163)
Q Consensus 64 ~~~~l~~~l~~~-g~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~------~~~~~iR 134 (163)
.++++.+.|+++ ++++..+. .+.++++.++.. +..++.+.|.+ +||.+.+|..+.. ..++++|
T Consensus 283 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~l~~-~gi~i~~g~~~~~~~~~~~~~~~~iR 354 (373)
T cd06453 283 LTAYALERLSEIPGVRVYGDAEDRAGVVSFNLEGI-------HPHDVATILDQ-YGIAVRAGHHCAQPLMRRLGVPGTVR 354 (373)
T ss_pred HHHHHHHHHhcCCCeEEeCCccccCCeEEEEECCc-------CHHHHHHHHHH-CCEEeccCccchhHHHHHhCCCCeEE
Confidence 899999999888 67765321 233556666642 56788888866 8999998875421 1267999
Q ss_pred EEEec-CChhHHHHHHHHH
Q 042816 135 FSFTL-LTEKDIHVVMERI 152 (163)
Q Consensus 135 i~~~~-~~~~~l~~~~~~l 152 (163)
+|++. .++++++.+++.|
T Consensus 355 is~~~~~t~~di~~~~~~l 373 (373)
T cd06453 355 ASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred EEecCCCCHHHHHHHHhhC
Confidence 99984 3778888887653
No 181
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=98.59 E-value=1.6e-06 Score=67.19 Aligned_cols=136 Identities=13% Similarity=0.101 Sum_probs=85.3
Q ss_pred ceeEEEEEecCHHHHHHHHHhhccc------------CCChHH---HHHHHHhcCChH---------HHHHHHHHHHHHH
Q 042816 6 GFRISVIYSYNNSVLAAAKKLARFS------------SVSAPS---QNLLVSMLSDTK---------FVQKFININRERL 61 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~~~~------------~~s~~~---q~~~~~~l~~~~---------~~~~~~~~~~~~~ 61 (163)
|.|+||+++ ++++++.+......+ +++... ..++.+++.+.. .+...+++.+++.
T Consensus 221 g~~~G~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 299 (397)
T TIGR01976 221 GPHMGILWG-RPELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYE 299 (397)
T ss_pred CCceEEEEE-cHHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHH
Confidence 668999999 888888766443211 122222 223333332210 0012357778888
Q ss_pred HHHHHHHHHHhhhc-CCccccC-----CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCC--------C
Q 042816 62 RRLYVKFVAGLRQL-GIECAKS-----NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCH--------C 127 (163)
Q Consensus 62 ~~~~~~l~~~l~~~-g~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~--------~ 127 (163)
.+..+++.+.|+++ ++++..+ .++ ++.+.++.. +..++.+.|.+ +||.|..|..+. .
T Consensus 300 ~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------~~~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~ 370 (397)
T TIGR01976 300 NRLAEYLLVGLSDLPGVTLYGVARLAARVP-TVSFTVHGL-------PPQRVVRRLAD-QGIDAWAGHFYAVRLLRRLGL 370 (397)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCCccCCCc-eEEEEeCCc-------CHHHHHHHHHH-CCeEEEeCccchHHHHHHhCC
Confidence 88899999999887 4777654 444 445555531 56788888866 899999886653 1
Q ss_pred -CCCceEEEEEec-CChhHHHHHHHH
Q 042816 128 -IEPGWFSFSFTL-LTEKDIHVVMER 151 (163)
Q Consensus 128 -~~~~~iRi~~~~-~~~~~l~~~~~~ 151 (163)
...+++|||+.. .++++++..++.
T Consensus 371 ~~~~~~iRis~~~~~t~~di~~l~~~ 396 (397)
T TIGR01976 371 NDEGGVVRVGLAHYNTAEEVDRLLEA 396 (397)
T ss_pred CCCCCeEEEEeeccCCHHHHHHHHHh
Confidence 125789999954 366777777664
No 182
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=98.57 E-value=1.7e-06 Score=67.81 Aligned_cols=144 Identities=14% Similarity=0.130 Sum_probs=89.8
Q ss_pred CceeEEEEEecCHHHHHHHHHhhc---c--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLAR---F--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIEC 79 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~---~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 79 (163)
.|+++|++++ ++++++.+..... . ++.+++.+.++...|+--.- ++..++.++.....++.+.+.++++++..
T Consensus 269 ~G~p~ga~~~-~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 346 (426)
T PRK00062 269 GGLPVGAFGG-RREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKE-PGFYEELEALTKRLAEGLKEAAKKAGIPL 346 (426)
T ss_pred CCCcceeeeE-HHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHcCCce
Confidence 6899999999 8999998853321 1 35788888877776653210 23445555555555566666555666544
Q ss_pred -ccCCceeEEEeecCC-ccc------CCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHH
Q 042816 80 -AKSNGGFYCWADMSG-LIS------SYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMER 151 (163)
Q Consensus 80 -~~~~~g~~~~~~~~~-~~~------~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~ 151 (163)
.++.|.++-+ .+.. ... ..+......+...|++ +||.+.|.. + +.+++++. ++++++++++++
T Consensus 347 ~vrg~G~~~~i-~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~-~Gv~v~~~~-~-----~~~~~~~~-~t~~ei~~~~~~ 417 (426)
T PRK00062 347 TVNRVGSMFGL-FFTDEPVTNYADAKKSDTERFARFFHAMLD-EGVYLAPSQ-F-----EAGFVSAA-HTDEDIEKTLEA 417 (426)
T ss_pred EEEEecceEEE-EEecCCCcchhhhccccHHHHHHHHHHHHH-CCeEeecCC-c-----Cceeeecc-CCHHHHHHHHHH
Confidence 3356665533 3321 100 0011123578888876 899998742 2 34677755 499999999999
Q ss_pred HHHHHHHh
Q 042816 152 IRRISQTC 159 (163)
Q Consensus 152 l~~~~~~~ 159 (163)
+.+++.++
T Consensus 418 l~~~l~~~ 425 (426)
T PRK00062 418 ARKAFAAL 425 (426)
T ss_pred HHHHHHhh
Confidence 99998764
No 183
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=98.55 E-value=2.1e-06 Score=67.22 Aligned_cols=147 Identities=13% Similarity=0.139 Sum_probs=93.4
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhh---------------------cc-c-CCChHHHHHHHHhcCChHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLA---------------------RF-S-SVSAPSQNLLVSMLSDTKFVQKFININR 58 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~---------------------~~-~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~ 58 (163)
+|.+| +||+++ ++++++.+.... .+ . +++.....++..+++.-. +.-+++.+
T Consensus 237 ~gp~G--~G~l~~-~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~--~~g~~~i~ 311 (424)
T PLN02855 237 CGPTG--IGFLWG-KSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLS--EIGMDRIH 311 (424)
T ss_pred cCCCc--cEEEEE-chhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHH--HhCHHHHH
Confidence 45455 899999 788776653220 01 1 133333344444443211 22356777
Q ss_pred HHHHHHHHHHHHHhhhc-CCccccCCc------eeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC----
Q 042816 59 ERLRRLYVKFVAGLRQL-GIECAKSNG------GFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC---- 127 (163)
Q Consensus 59 ~~~~~~~~~l~~~l~~~-g~~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~---- 127 (163)
++..+..+.+.+.|+++ |+++..+.. +-++.+.++.. +..++.+.|.+++||.+..|.....
T Consensus 312 ~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~~-------~~~~v~~~L~~~~gI~v~~g~~c~~~~~~ 384 (424)
T PLN02855 312 EYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEGI-------HPTDLSTFLDQQHGVAIRSGHHCAQPLHR 384 (424)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEECCc-------CHHHHHHHhcccCCEEEechhhhhHHHHH
Confidence 77888888888888887 777664321 22444566642 5678888886644999998874321
Q ss_pred --CCCceEEEEEec-CChhHHHHHHHHHHHHHHHhh
Q 042816 128 --IEPGWFSFSFTL-LTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 128 --~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~~ 160 (163)
.-++++|+|+.. .+.++++..++.|.+++..++
T Consensus 385 ~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~~~ 420 (424)
T PLN02855 385 YLGVNASARASLYFYNTKEEVDAFIHALKDTIAFFS 420 (424)
T ss_pred HhCCCCeEEEEeccCCCHHHHHHHHHHHHHHHHHHH
Confidence 115789999953 278999999999999887764
No 184
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=98.54 E-value=2.6e-06 Score=65.78 Aligned_cols=121 Identities=15% Similarity=0.235 Sum_probs=87.6
Q ss_pred cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCccccCCc---eeEEEeecCCcccCCChhhHH
Q 042816 30 SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIECAKSNG---GFYCWADMSGLISSYSEKGEL 105 (163)
Q Consensus 30 ~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~ 105 (163)
.+++.+.+.++...++.. .++++...+++++.++++.+.|+++ |+++..+.. +.++.+.++. + +..
T Consensus 236 gt~~~~~~~al~~al~~~---~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~ 305 (382)
T TIGR03403 236 GTLNVPYIVAMGEAMRLA---NEYLDFEKSHVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISIKG-V------EGE 305 (382)
T ss_pred CCcChHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEeCC-C------CHH
Confidence 567888887777777543 4557888899999999999999887 777776531 2233445543 1 566
Q ss_pred HHHHHHHHhcCeEEcCCCCCCC--------------C---CCceEEEEEec-CChhHHHHHHHHHHHHHHHhhh
Q 042816 106 ELWDKLLNVAKVNVTPGSSCHC--------------I---EPGWFSFSFTL-LTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 106 ~~~~~l~~~~gi~v~pg~~f~~--------------~---~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
.+...|. ++||.++.|+.+.. . ..+.+|+|+.. .+.++++.+++.|.+++++++.
T Consensus 306 ~~~~~L~-~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~~~~~~~ 378 (382)
T TIGR03403 306 AMLWDLN-KAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQRLRA 378 (382)
T ss_pred HHHHhhc-cCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 7777765 48999998765421 0 13689999975 4888999999999998887754
No 185
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=98.54 E-value=5.4e-06 Score=65.61 Aligned_cols=146 Identities=11% Similarity=0.048 Sum_probs=91.3
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhcc-c-CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLARF-S-SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAK 81 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~~-~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~ 81 (163)
++|-+.|++.+ ++++++.+.+...+ . ++.++...+++..+..-. ....+..++.+.++.++|.+.|.+.|+++..
T Consensus 288 L~GP~GG~I~~-~~~l~~~L~~a~P~i~gg~l~p~iAA~avAl~e~~--~~ef~~y~~~l~~Na~~La~~L~~~G~~vv~ 364 (493)
T PRK13580 288 LRGPRGGLVLA-KKEYADAVDKGCPLVLGGPLPHVMAAKAVALAEAR--TPEFQKYAQQVVDNARALAEGFLKRGARLVT 364 (493)
T ss_pred ccCCCeEEEEe-cHHHHHHHhhCCCcccCCCccHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHHHHHHHhcCCCccC
Confidence 45677899999 89999988655443 2 333333332232332210 1111456788888999999999999988752
Q ss_pred -CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCC-CCC---CceEEEEEec-----CChhHHHHHHHH
Q 042816 82 -SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCH-CIE---PGWFSFSFTL-----LTEKDIHVVMER 151 (163)
Q Consensus 82 -~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~-~~~---~~~iRi~~~~-----~~~~~l~~~~~~ 151 (163)
..-+-.+++++...- .......+.|. +.||.+.+-.... +.+ +..|||++.. ++.++++...+.
T Consensus 365 ggTdshIV~V~lg~~~-----~~g~~a~~~L~-e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~iad~ 438 (493)
T PRK13580 365 GGTDNHLVLIDVTSFG-----LTGRQAESALL-DAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAEL 438 (493)
T ss_pred CCCCCCEEEEEeCCHH-----HHHHHHHHHHH-HCCeEEccccCCCCCCCCCCCceEEeccchhhhcCCCHHHHHHHHHH
Confidence 122345677776421 12234555555 5899998643222 222 6789999864 346889999999
Q ss_pred HHHHHHH
Q 042816 152 IRRISQT 158 (163)
Q Consensus 152 l~~~~~~ 158 (163)
|.+++..
T Consensus 439 l~~~l~~ 445 (493)
T PRK13580 439 IVKVLSN 445 (493)
T ss_pred HHHHHHh
Confidence 9887764
No 186
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=98.53 E-value=6.6e-06 Score=60.89 Aligned_cols=141 Identities=18% Similarity=0.276 Sum_probs=102.3
Q ss_pred CCCCCceeEEEEEe--cCHHHHHHHHHhhc------ccCCChHHHHHHHHhcCChHHHHHHH---HHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVIYS--YNNSVLAAAKKLAR------FSSVSAPSQNLLVSMLSDTKFVQKFI---NINRERLRRLYVKFV 69 (163)
Q Consensus 1 ~~~~~G~RiG~~i~--~~~~~~~~~~~~~~------~~~~s~~~q~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~l~ 69 (163)
.||+.+=|+|-+.. .++..+..+..... .++++.....++.+.|+.++..++|. +.+-.+++++|..|.
T Consensus 254 NfGlYneRvGnltvv~~n~a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~W~~sik~MssRI~~MR~aLr 333 (410)
T KOG1412|consen 254 NFGLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQWIQSIKTMSSRIKKMRTALR 333 (410)
T ss_pred hcccccccccceEEEecChhHHHHHHHHHHHHHhhccCCCcchhhHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999998655 46766666554443 25677777899999999987644443 444556666666666
Q ss_pred HHhhhc---C-CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHH
Q 042816 70 AGLRQL---G-IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDI 145 (163)
Q Consensus 70 ~~l~~~---g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l 145 (163)
+.|..+ | ++=+..+.|+|-+.-+. ..-++.|.+++.|++.+ .+ ||+++.++..++
T Consensus 334 d~L~aL~TPGtWDHI~~QiGMFSyTGLt-----------p~qV~~li~~h~vyLl~------~G----RInisGLN~~Nv 392 (410)
T KOG1412|consen 334 DHLVALKTPGTWDHITQQIGMFSYTGLT-----------PAQVDHLIENHKVYLLS------DG----RINISGLNMKNV 392 (410)
T ss_pred HHHHhcCCCCcHHHHHhhccceeecCCC-----------HHHHHHHHHhceEEEec------CC----cEeeeccccccH
Confidence 666666 2 55556788998887665 44566788889999875 12 899988899999
Q ss_pred HHHHHHHHHHHHHhhhc
Q 042816 146 HVVMERIRRISQTCKSH 162 (163)
Q Consensus 146 ~~~~~~l~~~~~~~~~~ 162 (163)
+...+.|.+.++.++.+
T Consensus 393 eyVAkAIde~Vr~~~~~ 409 (410)
T KOG1412|consen 393 EYVAKAIDETVRAIKSN 409 (410)
T ss_pred HHHHHHHHHHHHhhccC
Confidence 99999999998877653
No 187
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=98.51 E-value=5.7e-06 Score=64.39 Aligned_cols=142 Identities=15% Similarity=0.200 Sum_probs=90.8
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHh----------------------hcc--cCCChHHHHHHHHhcCChHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKL----------------------ARF--SSVSAPSQNLLVSMLSDTKFVQKFININ 57 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~----------------------~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~ 57 (163)
+|.+| +||+++ ++++++.+... ..+ .+++.+...++..+++.-. +.-++..
T Consensus 228 ~gp~G--~G~l~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~--~~g~~~i 302 (406)
T PRK09295 228 YGPTG--IGILYV-KEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVS--ALGLNNI 302 (406)
T ss_pred cCCCC--cEEEEE-chHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHH--HhCHHHH
Confidence 56565 799999 88876654210 001 1355555555555554321 1123566
Q ss_pred HHHHHHHHHHHHHHhhhc-CCccccCC--ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC------C
Q 042816 58 RERLRRLYVKFVAGLRQL-GIECAKSN--GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC------I 128 (163)
Q Consensus 58 ~~~~~~~~~~l~~~l~~~-g~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~------~ 128 (163)
.++.++..+++.+.|+++ |+++..|. .++..+ .++.. +..++.+.| +++||.|.+|..... .
T Consensus 303 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~iv~~-~~~~~-------~~~~~~~~L-~~~gI~v~~g~~c~~~~~~~~~ 373 (406)
T PRK09295 303 AEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAF-NLGKH-------HAYDVGSFL-DNYGIAVRTGHHCAMPLMAYYN 373 (406)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEeCCCCCceEEEE-EECCc-------CHHHHHHHH-HhCCeEEeccccchHHHHHHHC
Confidence 677788888899998887 77776543 454433 45532 556777766 458999999874431 1
Q ss_pred CCceEEEEEec-CChhHHHHHHHHHHHHHH
Q 042816 129 EPGWFSFSFTL-LTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 129 ~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~ 157 (163)
.++++|+|+.. .+.++++..++.|+++..
T Consensus 374 ~~~~iRiS~~~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 374 VPAMCRASLAMYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred CCCEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 25789999974 377889999998887643
No 188
>PLN02955 8-amino-7-oxononanoate synthase
Probab=98.44 E-value=9.4e-06 Score=64.11 Aligned_cols=135 Identities=11% Similarity=0.043 Sum_probs=85.5
Q ss_pred CceeEEEEEecCHHHHHHHHHhhcc---cCCChHHHH-HHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLARF---SSVSAPSQN-LLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~~---~~~s~~~q~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
.|.+.||+.+ ++++++.+.+.... ++.+++... ++...++-. .. -...++.+.++.+++.+. .|+.+
T Consensus 321 ~G~~GGfi~g-s~~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~---~~-~~~~r~~L~~n~~~fr~~---~G~~~- 391 (476)
T PLN02955 321 AGCHGGFIAC-SKKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVA---RK-EKWRRKAIWERVKEFKAL---SGVDI- 391 (476)
T ss_pred hhccCceeec-HHHHHHHHHHhCCCCeecccccHHHHHHHHHHHHHH---hc-CHHHHHHHHHHHHHHHHh---cCCCC-
Confidence 4678899999 88999998877662 333443333 222222211 11 123566777777777763 25553
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC-CCCceEEEEEec-CChhHHHHHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC-IEPGWFSFSFTL-LTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~-~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~ 158 (163)
++..+-+.++.. ....+++++|++ +||.+.+...... .+...+||+++. ++.++++..++.|.++...
T Consensus 392 ---~sPI~pI~ig~~------~~a~~~~~~L~~-~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~lv~~L~~~~~~ 461 (476)
T PLN02955 392 ---SSPIISLVVGNQ------EKALKASRYLLK-SGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLITALSSCLDF 461 (476)
T ss_pred ---CCCEEEEEeCCH------HHHHHHHHHHHH-CCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHHHHHHHHHHHhh
Confidence 122333333332 266788999887 8999987554433 235689999965 6889999999999887654
No 189
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=98.42 E-value=8.3e-06 Score=62.84 Aligned_cols=118 Identities=19% Similarity=0.184 Sum_probs=81.4
Q ss_pred CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh-c-CCccccCC-----ceeEEEeecCCcccCCChhh
Q 042816 31 SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ-L-GIECAKSN-----GGFYCWADMSGLISSYSEKG 103 (163)
Q Consensus 31 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~-g~~~~~~~-----~g~~~~~~~~~~~~~~~~~~ 103 (163)
+++.+.-.++..+++.. .++++...+.+++.++.+.+.|++ + ++.+..+. +.+.+|++.+ +
T Consensus 233 t~~~~~~~~l~~al~~~---~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 300 (379)
T TIGR03402 233 TENVPGIVGLGKAAELA---TEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEYI---------E 300 (379)
T ss_pred CccHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecCC---------C
Confidence 34444444444444432 455677778888889999998875 5 66555432 3455565433 4
Q ss_pred HHHHHHHHHHhcCeEEcCCCCCCCC-----------------CCceEEEEEec-CChhHHHHHHHHHHHHHHHhhh
Q 042816 104 ELELWDKLLNVAKVNVTPGSSCHCI-----------------EPGWFSFSFTL-LTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 104 ~~~~~~~l~~~~gi~v~pg~~f~~~-----------------~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
..++...|. ++||.|.+|..|... .++.+|+|+.. .+.++++.+++.|+++++++..
T Consensus 301 ~~~~~~~l~-~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~~~~ 375 (379)
T TIGR03402 301 GEAILLLLD-MEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIARLRA 375 (379)
T ss_pred HHHHHHhhc-cCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 577888664 589999999876432 14789999975 4889999999999998887654
No 190
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=98.38 E-value=2.7e-05 Score=60.15 Aligned_cols=134 Identities=20% Similarity=0.163 Sum_probs=88.8
Q ss_pred EEEEEecCHHHHHHHHHhhcc---cCCChHHH-HHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCc
Q 042816 9 ISVIYSYNNSVLAAAKKLARF---SSVSAPSQ-NLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSNG 84 (163)
Q Consensus 9 iG~~i~~~~~~~~~~~~~~~~---~~~s~~~q-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~ 84 (163)
-||+.+ +..+++.+.+...+ ++.-+|.+ .++...++.- +.-...++.+.++...+.+.++..|+.+.++..
T Consensus 248 Gg~v~g-~~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l----~~~~~~r~~L~~~~~~~~~~~~~~~~~~~~s~s 322 (388)
T COG0156 248 GGYIAG-SAALIDYLRNRARPFIFSTALPPAVAAAALAALRIL----EEGPERRERLQELAAFFRSLLKALGLVLLPSES 322 (388)
T ss_pred CceeeC-cHHHHHHHHHhCCceeccCCCCHHHHHHHHHHHHHH----HhCHHHHHHHHHHHHHHHHHHHhcCCccCCCCC
Confidence 378888 99999999887662 33333333 3444444432 223566777778888888777776877765555
Q ss_pred eeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC-CCCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 85 GFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC-IEPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~-~~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
.+ +.+.+... ..+..++..|++ .||.+.+...... .+...+|++++. +++++++..++.+.++
T Consensus 323 ~I-~pv~~gd~------~~a~~~s~~l~~-~Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 323 PI-IPVILGDE------ERALEASRALLE-EGIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred Ce-eeeEeCCH------HHHHHHHHHHHH-CCeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence 43 33333321 267899999988 5999998654443 346899999975 5778888877777654
No 191
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=98.35 E-value=4e-05 Score=59.59 Aligned_cols=148 Identities=9% Similarity=-0.008 Sum_probs=88.1
Q ss_pred ceeEEEEEecCHHHHHHHHHhhc--ccCC--ChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc--
Q 042816 6 GFRISVIYSYNNSVLAAAKKLAR--FSSV--SAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIEC-- 79 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~~--~~~~--s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~-- 79 (163)
|.+.||+++ ++++++.+..... .++. +++.+.++...+... .+ .+..++.+.++.+++.+.|++.+...
T Consensus 213 g~~gg~v~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~---~~-~~~~~~~l~~~~~~l~~~L~~~~~~~~~ 287 (392)
T PLN03227 213 GSVGGMTVG-SEEVVDHQRLSGSGYCFSASAPPFLAKADATATAGE---LA-GPQLLNRLHDSIANLYSTLTNSSHPYAL 287 (392)
T ss_pred hccCcEEec-CHHHHHHHHHhCcCccccCCCCHHHHHHHHHHHHHH---hc-CHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 577899988 8898887765433 1233 344555555444332 11 24566777888888888887543221
Q ss_pred --------ccCCceeEEEeecCCcccCC---ChhhHHHHHHHHHHhcCeEEcCCCC-----CCCCCCceEEEEEec-CCh
Q 042816 80 --------AKSNGGFYCWADMSGLISSY---SEKGELELWDKLLNVAKVNVTPGSS-----CHCIEPGWFSFSFTL-LTE 142 (163)
Q Consensus 80 --------~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~gi~v~pg~~-----f~~~~~~~iRi~~~~-~~~ 142 (163)
.....|..+-+.+...-... ......++++.+++ +|+.+.+... +...++..+|+++.. +++
T Consensus 288 ~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t~ 366 (392)
T PLN03227 288 KLRNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLS-EGVAVVSTGGHVKKFLQLVPPPCLRVVANASHTR 366 (392)
T ss_pred ccccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHH-CCCEEEecccccCCcCCCCCCceEEEEecCCCCH
Confidence 11122344555554310000 00012478888876 8999865211 111226789999965 699
Q ss_pred hHHHHHHHHHHHHHHHh
Q 042816 143 KDIHVVMERIRRISQTC 159 (163)
Q Consensus 143 ~~l~~~~~~l~~~~~~~ 159 (163)
|+++++++.|.+++++.
T Consensus 367 eei~~~~~~l~~~~~~~ 383 (392)
T PLN03227 367 EDIDKLLTVLGEAVEAI 383 (392)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988764
No 192
>PLN02242 methionine gamma-lyase
Probab=98.32 E-value=7.1e-05 Score=58.68 Aligned_cols=143 Identities=13% Similarity=0.118 Sum_probs=89.8
Q ss_pred CCCCcee-EEEEEecCHHHHHHHHHhhc----ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 042816 2 LSLPGFR-ISVIYSYNNSVLAAAKKLAR----FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG 76 (163)
Q Consensus 2 ~~~~G~R-iG~~i~~~~~~~~~~~~~~~----~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 76 (163)
|+.+|.+ .||+++ ++++++.+..... ..+++...|.+...+.... .+....+.+.++++.+.+.|++++
T Consensus 225 l~g~g~~~gG~iv~-~~~li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~l~-----tl~~r~~~~~~~a~~la~~L~~~~ 298 (418)
T PLN02242 225 ISGGADIIAGAVCG-PAELVNSMMDLHHGALMLLGPTMNPKVAFELSERLP-----HLSLRMKEHCRRAMEYAKRMKELG 298 (418)
T ss_pred cCCCCCceEEEEEc-CHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHcCCC-----cHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6778887 599999 8999998887744 3466667787777776643 233455688899999999999987
Q ss_pred CccccCC-------------------ceeEEEeecCCcccCCChhhHHHHHHHHHHhc----CeEEcCCCCCC-------
Q 042816 77 IECAKSN-------------------GGFYCWADMSGLISSYSEKGELELWDKLLNVA----KVNVTPGSSCH------- 126 (163)
Q Consensus 77 ~~~~~~~-------------------~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----gi~v~pg~~f~------- 126 (163)
+++..|. .|-.+.+++.. ......|.+.|.- - .+.+.-|..-.
T Consensus 299 ~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~~------~~~~~~f~~~l~~-~~~~~~~~~slG~~~sl~~~p~~ 371 (418)
T PLN02242 299 LKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDT------EERANRLMRYLQN-STQFGFMAVSLGYYETLMSCSGS 371 (418)
T ss_pred CEEECCCCCCCccHHHHHHhcccCCCceeEEEEEECC------HHHHHHHHHHhhc-ccccceeeecCCCCCceeeCCCc
Confidence 6666442 12234445532 1245566665531 1 12222221110
Q ss_pred --------------CCCCceEEEEEecCChh-HHHHHHHHHHHHHHHhh
Q 042816 127 --------------CIEPGWFSFSFTLLTEK-DIHVVMERIRRISQTCK 160 (163)
Q Consensus 127 --------------~~~~~~iRi~~~~~~~~-~l~~~~~~l~~~~~~~~ 160 (163)
...++-+|||++- | +.+..++-|.+++.+.+
T Consensus 372 ~~~~~~~~~~~~~~gi~~~liRlsvGl---E~~~~dli~dl~~al~~~~ 417 (418)
T PLN02242 372 STSSELDPEEKAAAGISPGLVRMSVGY---TGTLEQRWSQFEKALSAMK 417 (418)
T ss_pred cccccCCHHHHHhcCCCCCeEEEEecC---CCCHHHHHHHHHHHHHHhh
Confidence 0115689999997 5 36777777777776654
No 193
>PRK07049 methionine gamma-lyase; Validated
Probab=98.31 E-value=3.9e-05 Score=60.30 Aligned_cols=68 Identities=13% Similarity=0.116 Sum_probs=52.8
Q ss_pred CC-CCceeEEEEEecCHHHHHHHHHhhccc--CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CC
Q 042816 2 LS-LPGFRISVIYSYNNSVLAAAKKLARFS--SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GI 77 (163)
Q Consensus 2 ~~-~~G~RiG~~i~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 77 (163)
|| .+|+|+||+++ ++++++.+.+....+ +++++.|.++...|+.- . ...+...+++..+.+.|+++ ++
T Consensus 243 ~gG~~glr~G~vv~-~~~l~~~l~~~~~~~g~~ls~~~a~l~~r~L~tl---~----~R~~~~~~~a~~la~~L~~~p~V 314 (427)
T PRK07049 243 VGGHSDLVAGAVLG-RKALIRQVRALRSAIGTQLDPHSCWMLGRSLETL---V----LRMERANRNARAVAEFLRDHPKV 314 (427)
T ss_pred ecCCCCcEEEEEEC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCChH---H----HHHHHHHHHHHHHHHHHHhCCCc
Confidence 45 79999999999 899999998877653 58888999888888642 2 22334488899999999988 53
No 194
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=98.26 E-value=5.6e-06 Score=62.83 Aligned_cols=109 Identities=18% Similarity=0.207 Sum_probs=70.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCccc-cCCceeEEEeecCCcccCCChhhHHHHHHHHH
Q 042816 35 PSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIECA-KSNGGFYCWADMSGLISSYSEKGELELWDKLL 112 (163)
Q Consensus 35 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~ 112 (163)
+.+.++..++.. ..+++..+...+..+++.+.|+++ ++++. ++++++..|. ++... ..+ .+..++.+.|.
T Consensus 232 ~~~~~~l~~l~~-----~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~iv~f~-~~~~~-~~~-~~~~~i~~~L~ 303 (345)
T cd06450 232 LKLWATLRRFGR-----DGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCFR-LKPSV-KLD-ELNYDLSDRLN 303 (345)
T ss_pred HHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEE-ECCcc-hhh-HHHHHHHHHHH
Confidence 334444455543 334666777778899999999888 77654 4667766664 44310 000 15678888887
Q ss_pred HhcCeEEcCCCCCCCCCCceEEEEEec-C-ChhHHHHHHHHHHH
Q 042816 113 NVAKVNVTPGSSCHCIEPGWFSFSFTL-L-TEKDIHVVMERIRR 154 (163)
Q Consensus 113 ~~~gi~v~pg~~f~~~~~~~iRi~~~~-~-~~~~l~~~~~~l~~ 154 (163)
+ +|+.+.++..+. .++++|+++.. . +.++++.+++.|.+
T Consensus 304 ~-~g~~~~~~~~~~--~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 304 E-RGGWHVPATTLG--GPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred h-cCCEEEEeeEEC--CeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 6 666665555443 36899999985 2 77888888887764
No 195
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=98.20 E-value=0.00016 Score=57.19 Aligned_cols=148 Identities=10% Similarity=0.124 Sum_probs=82.2
Q ss_pred CceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccC
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKS 82 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ 82 (163)
.|+++|++++ ++++.+.+..... .++.+++...++...|+.-+. ++..++.++.-...++.+.+..+++.+-....
T Consensus 280 ~G~p~gav~~-~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vr 357 (445)
T PRK08593 280 GGMPMSAIVG-RKEIMESLEAPAHLFTTGANPVSCAAALATIDMIED-ESLLQRSAEKGEYARKRFDQWVSKYNFVGDVR 357 (445)
T ss_pred CCcccEEEEE-cHHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhcCCcEEEEe
Confidence 3689999999 8999888853222 235667776656555542110 12222222222222233333222332211112
Q ss_pred CceeEEEeecCCc--ccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHHHh
Q 042816 83 NGGFYCWADMSGL--ISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 83 ~~g~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~ 159 (163)
.-|+++.+++... ...........++..+++ +||.+.+.. .+.+|++... +++++++.+++.+.+++.++
T Consensus 358 G~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~-~Gv~~~~~~------~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~ 430 (445)
T PRK08593 358 GYGLSIGIDIVSDKKLKTRDNEAALKICNYCFE-HGVVIIAVA------GNVLRFQPPLVITYEQLDTALNTIEQAFTAL 430 (445)
T ss_pred ccceEEEEEEecCCCcCCCcHHHHHHHHHHHHH-CCeEEeccC------CCEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence 3344444554321 011111234578888876 899997631 3578888764 58899999999999998876
Q ss_pred hh
Q 042816 160 KS 161 (163)
Q Consensus 160 ~~ 161 (163)
.+
T Consensus 431 ~~ 432 (445)
T PRK08593 431 EA 432 (445)
T ss_pred hc
Confidence 43
No 196
>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]
Probab=98.16 E-value=0.00011 Score=56.35 Aligned_cols=138 Identities=12% Similarity=0.051 Sum_probs=95.8
Q ss_pred EEEEEecCHHHHHHHHHhhc-c-cCCChH--HHHHHH---HhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Q 042816 9 ISVIYSYNNSVLAAAKKLAR-F-SSVSAP--SQNLLV---SMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAK 81 (163)
Q Consensus 9 iG~~i~~~~~~~~~~~~~~~-~-~~~s~~--~q~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~ 81 (163)
-|||.+ ...+++.++.+.. + +++|.+ ....+. .+++.. +-+..|+..+++..++.+.|.+.|+.+.+
T Consensus 379 GGYIAa-t~~LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~~-----eg~~lR~~hqrnv~~~kq~l~~~GiPVi~ 452 (570)
T KOG1360|consen 379 GGYIAA-TRKLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKSE-----EGRVLRRQHQRNVKYVKQLLMELGIPVIP 452 (570)
T ss_pred cceehh-hhhHHHHHHHhcCceEEecCCChHHHHhHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHHHHHHcCCcccC
Confidence 489999 8999999999988 3 333332 223222 333332 23677888889999999999999999886
Q ss_pred CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCC-CCCCceEEEEEec-CChhHHHHHHHHHHHHHHHh
Q 042816 82 SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCH-CIEPGWFSFSFTL-LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~-~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~ 159 (163)
...-+ +=+.+... .-+...++.|+.++||+|+.-.... ..+++.+||.-.+ ++.+-++..++.+.+++++.
T Consensus 453 ~pSHI-iPv~vgda------~l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~v 525 (570)
T KOG1360|consen 453 NPSHI-IPVRVGDA------ALAKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQMMNILVNALLDVWNEV 525 (570)
T ss_pred CCcce-eeeeccCH------HHHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 54421 22223221 2567889999999999998754332 2347889998876 46677888888888888764
No 197
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=98.15 E-value=4.9e-05 Score=58.51 Aligned_cols=137 Identities=12% Similarity=0.118 Sum_probs=80.5
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhcc----c---CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLARF----S---SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL- 75 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~~----~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 75 (163)
++|.+.|+++. ++++++.+...... . ..+..++.++...+.+. -....+.+.++++.+.+.|+++
T Consensus 211 l~gp~~G~l~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~~~------~~~~~~~~~~~~~~l~~~L~~i~ 283 (363)
T TIGR01437 211 IEGPTSGLVLG-KKKYIEWVKLQSKGIGRAMKVGKENILGLTAALEQYLST------GKESGAEMVAKLTPFIEALNTLK 283 (363)
T ss_pred cCCCceEEEEE-cHHHHHHHHhccCCCcceeccCHHHHHHHHHHHHHHHcc------CcccHHHHHHHHHHHHHHHhcCC
Confidence 67889999999 88888876433221 1 11222333333332221 1223334445677899999988
Q ss_pred CCccccCC--ceeE---EEeecCCcccCCChhhHHHHHHHHHHhcC--eEEcCCCCCCCCCCceEEEEEecCChhHHHHH
Q 042816 76 GIECAKSN--GGFY---CWADMSGLISSYSEKGELELWDKLLNVAK--VNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVV 148 (163)
Q Consensus 76 g~~~~~~~--~g~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~g--i~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~ 148 (163)
|+++..+. .+.. .-+.+... +.+ .+..++.+.|.+ ++ |.+++ .|.. .+.+|++....++++++..
T Consensus 284 g~~~~~~~~~~~~~~~~~~v~~~~~--~~g-~~~~~l~~~L~~-~~~~I~~r~--~~~~--~~~~~l~~~~~~~~e~~~~ 355 (363)
T TIGR01437 284 GVSASIVQDEAGRDIARAEIRFDES--ELG-MTAADVVQALRQ-GEPAIYTRG--YKAN--EGIIEIDPRSVTGGQLDII 355 (363)
T ss_pred CeEEEEecCCCCCcCceEEEEEecc--CCC-CCHHHHHHHHhc-CCCCEEEee--eeec--CCeEEEEeecCCHHHHHHH
Confidence 87776321 1111 11222210 001 277899998865 66 66655 3443 6789999988788898888
Q ss_pred HHHHHHH
Q 042816 149 MERIRRI 155 (163)
Q Consensus 149 ~~~l~~~ 155 (163)
.++|.++
T Consensus 356 ~~~l~~~ 362 (363)
T TIGR01437 356 VERIREI 362 (363)
T ss_pred HHHHHHh
Confidence 8888765
No 198
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=98.12 E-value=0.00027 Score=54.16 Aligned_cols=140 Identities=8% Similarity=0.082 Sum_probs=89.2
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHh----------h---c-ccCCChHHHHHHHHhcCChHHHHHH--HHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKL----------A---R-FSSVSAPSQNLLVSMLSDTKFVQKF--ININRERLRRLY 65 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~----------~---~-~~~~s~~~q~~~~~~l~~~~~~~~~--~~~~~~~~~~~~ 65 (163)
||.|| +|++++ ++++++.+... . . +.+++...-.++..+|+.- .+. ++...+++++..
T Consensus 187 lgP~G--lg~l~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l---~~~gG~e~i~~r~~~l~ 260 (349)
T TIGR01364 187 IGPAG--LTVVIV-RKDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWL---KEQGGVKAIEKRNQAKA 260 (349)
T ss_pred cCCCc--eEEEEE-CHHHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHH
Confidence 56555 788888 77777654221 1 1 1245555555555555432 222 688899999999
Q ss_pred HHHHHHhhhc-CCcccc--C--CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-
Q 042816 66 VKFVAGLRQL-GIECAK--S--NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL- 139 (163)
Q Consensus 66 ~~l~~~l~~~-g~~~~~--~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~- 139 (163)
+++.+.|+++ |+.... + ..+..+-+.++... ...++...+.+ .|+.+.+|.. ..+.+|+|+..
T Consensus 261 ~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~~------~~~~~~~~~~~-~Gi~~~~~~~----~~g~vRvS~~~~ 329 (349)
T TIGR01364 261 QLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNEE------LEKRFLKEAEE-RGLVSLKGHR----SVGGMRASIYNA 329 (349)
T ss_pred HHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCChh------HhHHHHHHHHH-CCCcccCCcc----ccCeeEEECcCC
Confidence 9999999999 653331 1 22233444555321 23566565655 8998888765 13689999865
Q ss_pred CChhHHHHHHHHHHHHHHH
Q 042816 140 LTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 140 ~~~~~l~~~~~~l~~~~~~ 158 (163)
.+.++++..++.|+++.++
T Consensus 330 nt~edid~l~~al~~~~~~ 348 (349)
T TIGR01364 330 MPLEGVQALVDFMKEFQKK 348 (349)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 4789999999998886654
No 199
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=98.12 E-value=0.00014 Score=56.46 Aligned_cols=145 Identities=11% Similarity=0.072 Sum_probs=83.1
Q ss_pred CceeEEEEEecCHHHHHHHHHhhcc--------cC--CChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLARF--------SS--VSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ 74 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~~--------~~--~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (163)
++.|+||+++ ++++++.+.+.... ++ .......++...+. .+.+..++ .+...++.+++.+.|++
T Consensus 224 ~~~~~G~l~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~---~~~~~~~~-~~~~~~~~~~l~~~L~~ 298 (387)
T PRK09331 224 ASAPSGVLAT-TEEYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFP---HVVERVKR-WDEEVKKARWFVDELEK 298 (387)
T ss_pred CCCCEEEEEE-CHHHHhhcccccCCCcccceeeeceecCchHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 4459999999 88988887654321 11 11111111111221 11233333 33445677788999999
Q ss_pred c-CCcccc--CCceeEEEeecCCccc--CCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHH
Q 042816 75 L-GIECAK--SNGGFYCWADMSGLIS--SYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVM 149 (163)
Q Consensus 75 ~-g~~~~~--~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~ 149 (163)
+ |+++.. +...-++.++.|.... .....+...+.+.|.+ +||.+.+. .....+|+....+++++++..+
T Consensus 299 l~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~gI~~~~~-----~~~~i~ri~~~g~t~~di~~l~ 372 (387)
T PRK09331 299 IEGFKQLGEKPRNHDLMKFETPSFDEIAKKHKRRGFFLYEELKK-RGIHGIKP-----GATKEFKLSTYGLTWEQVEYVA 372 (387)
T ss_pred CCCEEEeccCcCcCCeEEEeCCchhHHhhhccccchhHHHHHHH-cCceEEcc-----CCceEEEEEeccCCHHHHHHHH
Confidence 9 888773 2223334456552110 0001134568888865 79984331 1245677777456889999999
Q ss_pred HHHHHHHHHhh
Q 042816 150 ERIRRISQTCK 160 (163)
Q Consensus 150 ~~l~~~~~~~~ 160 (163)
+.|.++.+++.
T Consensus 373 ~aL~~i~~~~~ 383 (387)
T PRK09331 373 DAFKEIAEKYG 383 (387)
T ss_pred HHHHHHHHhcC
Confidence 99998877653
No 200
>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]
Probab=98.08 E-value=0.00017 Score=53.27 Aligned_cols=140 Identities=13% Similarity=0.106 Sum_probs=90.6
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhcc---cCCChHH-----HHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLARF---SSVSAPS-----QNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~~---~~~s~~~-----q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
+.|---||..+ |++++.-+++...+ +++-+|+ ..+...++.+. + .....+.+.+.+.+.+...
T Consensus 265 lGga~GGyttg-p~~li~llrqr~RpylFSnslppavV~~a~ka~dllm~s~----~----~i~~~~a~~qrfr~~me~a 335 (417)
T KOG1359|consen 265 LGGASGGYTTG-PKPLISLLRQRSRPYLFSNSLPPAVVGMAAKAYDLLMVSS----K----EIQSRQANTQRFREFMEAA 335 (417)
T ss_pred hcCCCCCCccC-ChhHHHHHHhcCCceeecCCCChhhhhhhHHHHHHHHhhH----H----HHHHHHHHHHHHHHHHHhc
Confidence 34566799999 99999999887773 2222211 22333333332 2 2333445677788888778
Q ss_pred CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCC-CCCCceEEEEEec-CChhHHHHHHHHHH
Q 042816 76 GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCH-CIEPGWFSFSFTL-LTEKDIHVVMERIR 153 (163)
Q Consensus 76 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~-~~~~~~iRi~~~~-~~~~~l~~~~~~l~ 153 (163)
|+++...+..+ +|..++.. .-+..++++|++ .||+|..-+... ++++..+|+.++. +++|++++.++.+.
T Consensus 336 GftIsg~~hPI-----~pv~lGda--~lA~~~ad~lLk-~Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~Af~ 407 (417)
T KOG1359|consen 336 GFTISGASHPI-----CPVMLGDA--RLASKMADELLK-RGIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFS 407 (417)
T ss_pred CceecCCCCCc-----cceecccH--HHHHHHHHHHHh-cCceEEeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHH
Confidence 99988744321 22222110 246788999998 899998544333 2346788888865 68899999999999
Q ss_pred HHHHHhh
Q 042816 154 RISQTCK 160 (163)
Q Consensus 154 ~~~~~~~ 160 (163)
++.+.++
T Consensus 408 ~vgr~~~ 414 (417)
T KOG1359|consen 408 EVGRFLN 414 (417)
T ss_pred HHHHhhc
Confidence 9887664
No 201
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=98.06 E-value=0.0002 Score=56.22 Aligned_cols=138 Identities=10% Similarity=0.061 Sum_probs=80.6
Q ss_pred CCceeEEEEEecCHHHHHHHHHh---hc--c---cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKL---AR--F---SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~---~~--~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
.+++++|++++ ++++.+.+... .. . ++.+++...++...++.-+- +++.++..+ .-+.+.+.|++.
T Consensus 273 gG~~p~~av~~-~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~-~~~~~~~~~----~g~~l~~~l~~l 346 (423)
T PRK05964 273 GGYLPLAATLC-TAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFED-EPVLERVAA----LSAGLAEGLEPF 346 (423)
T ss_pred cCcccceEEEE-cHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHh-cCHHHHHHH----HHHHHHHHHHhh
Confidence 34489999999 99999888542 11 1 24566776666555542100 122333333 333333333332
Q ss_pred ----CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHH
Q 042816 76 ----GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVME 150 (163)
Q Consensus 76 ----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~ 150 (163)
++.-.... |..+.+.+...- .......+.+.|.+ +||.+.|. .+.+|++... +++++++.+++
T Consensus 347 ~~~~~i~~vrg~-Gl~~~i~l~~~~---~~~~~~~l~~~l~~-~Gv~v~~~-------~~~lR~~p~l~~t~edId~~v~ 414 (423)
T PRK05964 347 RDLPGVADVRVL-GAIGAVELDRPV---LERDGPALRAFALE-RGVLLRPL-------GNTIYLMPPYIITAEELDRITD 414 (423)
T ss_pred ccCCCeEEeecc-cEEEEEEeccCc---chhHHHHHHHHHHH-CCeEEEec-------CCEEEEeCCcccCHHHHHHHHH
Confidence 22212233 444455554310 00125678888876 89999863 1479998762 48899999999
Q ss_pred HHHHHHHHh
Q 042816 151 RIRRISQTC 159 (163)
Q Consensus 151 ~l~~~~~~~ 159 (163)
.+.+++.++
T Consensus 415 ~l~~al~~~ 423 (423)
T PRK05964 415 AIVEVADEL 423 (423)
T ss_pred HHHHHHhhC
Confidence 999998764
No 202
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=98.06 E-value=0.00021 Score=56.52 Aligned_cols=144 Identities=7% Similarity=0.006 Sum_probs=83.8
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh----c
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ----L 75 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~ 75 (163)
+|. |+++|++++ +++ .+.+..... .++.+++++.++.+.|+.- ++ +...+.++++.+++.+.|++ +
T Consensus 277 l~~-G~Pigav~~-~~~-~~~~~~~~~~~T~~gnpla~aaa~a~L~~i---~~--~~l~~~~~~~g~~l~~~L~~l~~~~ 348 (442)
T TIGR00709 277 VGG-GLPLAVLLI-APE-FDAWQPAGHTGTFRGNQLAMVTGTEALNYW---KD--DNLAQNAQERGERITSFLDDMIKEH 348 (442)
T ss_pred ccC-CcccEEEEE-chH-HhccCCCcCCCCCCcCHHHHHHHHHHHHHH---Hh--cCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455 899999999 777 454422111 2567888888888777531 11 12333444444455444443 2
Q ss_pred C-CccccCCceeEEEeecCCc--cc------CCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHH
Q 042816 76 G-IECAKSNGGFYCWADMSGL--IS------SYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDI 145 (163)
Q Consensus 76 g-~~~~~~~~g~~~~~~~~~~--~~------~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l 145 (163)
+ +.-.. .-|.++-+++.+. .+ .....-...+...+++ +||.+.++... .+.+|+..+. ++++++
T Consensus 349 ~~v~~vr-G~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~~~~----~~~l~~~Ppl~it~~ei 422 (442)
T TIGR00709 349 PCIGNVR-GRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFE-NGLLLETGGRE----GEVFRLLCPITIDQEEC 422 (442)
T ss_pred CCeeeee-ccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHH-CCeEEeecCCC----CCEEEEECCCCCCHHHH
Confidence 2 22222 3345555566321 00 0001123456666766 89999763221 3678887764 589999
Q ss_pred HHHHHHHHHHHHHh
Q 042816 146 HVVMERIRRISQTC 159 (163)
Q Consensus 146 ~~~~~~l~~~~~~~ 159 (163)
+++++++.+++.+.
T Consensus 423 ~~~~~~l~~~l~~~ 436 (442)
T TIGR00709 423 EEGISRFKQAVEEA 436 (442)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
No 203
>PRK06460 hypothetical protein; Provisional
Probab=98.05 E-value=0.00036 Score=54.04 Aligned_cols=64 Identities=13% Similarity=0.065 Sum_probs=45.5
Q ss_pred ceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 6 GFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
|.|+||+++ ++++++.+.+....++.+.... .+..++... ++++...+...++++.+.+.|+++
T Consensus 198 ~~~~G~~~~-~~~l~~~l~~~~~~~g~~~~~~-~a~~~l~~~----~~l~~r~~~~~~n~~~l~~~L~~~ 261 (376)
T PRK06460 198 DVIAGLAAG-YGKLLNVIDQMRRTLGTSLDPH-AAYLTLRGI----KTLKIRMDVINRNAEQIAEFLEGH 261 (376)
T ss_pred CceEEEEec-CHHHHHHHHHHHHhcCCCCCHH-HHHHHHhch----hhHHHHHHHHHHHHHHHHHHHHcC
Confidence 478999999 9999999988776554432222 233334443 455677778888999999999887
No 204
>PLN02452 phosphoserine transaminase
Probab=98.04 E-value=0.00036 Score=53.77 Aligned_cols=140 Identities=10% Similarity=0.135 Sum_probs=91.3
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--------------ccCCChHHHHHHHHhcCChHHHHH--HHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--------------FSSVSAPSQNLLVSMLSDTKFVQK--FININRERLRRLY 65 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--------------~~~~s~~~q~~~~~~l~~~~~~~~--~~~~~~~~~~~~~ 65 (163)
+|.|| +|++++ .+++++.+..... +.+++...-.++..+|+.- .+ =++...++++++.
T Consensus 202 lGP~G--l~~v~v-r~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l---~~~gGl~~~~~r~~~~a 275 (365)
T PLN02452 202 VGPSG--VTIVII-RKDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDL---LAQGGLKAMEKRNIRKA 275 (365)
T ss_pred cCCCC--eEEEEE-cHHHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHH---HHccCHHHHHHHHHHHH
Confidence 57777 688899 7877765432211 0234444444555554432 22 2688889999999
Q ss_pred HHHHHHhhhc-CC-cc-ccC--CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-c
Q 042816 66 VKFVAGLRQL-GI-EC-AKS--NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-L 139 (163)
Q Consensus 66 ~~l~~~l~~~-g~-~~-~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~ 139 (163)
+++++.|++. |+ .. ..+ .+.+.+-+.++.. ....+|.+.+.+ +|+...+|..-. .+ +|+|+= .
T Consensus 276 ~~l~~~l~~~~G~y~~~~~~~~rs~~~vsF~~~~~------~~~~~f~~~~~~-~g~~~~~G~r~~---gg-~R~s~yna 344 (365)
T PLN02452 276 DLLYDAIDESNGFYVCPVEKSVRSLMNVPFTLGGS------ELEAEFVKEAAK-AGMVQLKGHRSV---GG-MRASIYNA 344 (365)
T ss_pred HHHHHHHHhCCCcccCCCChHHhCCeEEEEEcCCc------hhHHHHHHHHHH-CCCcccCCcccc---Cc-eEEECcCC
Confidence 9999999986 76 11 111 2455565666643 257788887765 999999987643 23 999984 4
Q ss_pred CChhHHHHHHHHHHHHHHH
Q 042816 140 LTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 140 ~~~~~l~~~~~~l~~~~~~ 158 (163)
++.+.++..++-++++-++
T Consensus 345 ~~~~~v~~L~~~m~~f~~~ 363 (365)
T PLN02452 345 MPLAGVEKLVAFMKDFQAK 363 (365)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 5878877777777766554
No 205
>PRK07582 cystathionine gamma-lyase; Validated
Probab=98.04 E-value=0.0006 Score=52.59 Aligned_cols=134 Identities=10% Similarity=0.113 Sum_probs=80.2
Q ss_pred CCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCc-
Q 042816 3 SLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIE- 78 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~- 78 (163)
|.+|+|+||+++.++++++.+...... ..++++....+...++.- +..+ +...++...+.+.|+++ .+.
T Consensus 197 G~~g~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l~~r~l~tl---~~R~----~~~~~na~~la~~L~~~p~v~~ 269 (366)
T PRK07582 197 GHSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRSLGTL---GLRF----ARQCANALAVAELLAGHPAVRG 269 (366)
T ss_pred CCCCeeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccccH---HHHH----HHHHHHHHHHHHHHHhCCCccE
Confidence 456799999998568888888877664 346677777777777653 3333 33446788888888887 432
Q ss_pred cc------cC-----------CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC--------------
Q 042816 79 CA------KS-----------NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC-------------- 127 (163)
Q Consensus 79 ~~------~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~-------------- 127 (163)
+. .| .||++ .+++. +..+..+ +++..++... +..++.
T Consensus 270 v~yp~l~~~p~~~~~~~~~~~~gg~~-s~~~~---------~~~~~~~-~~~~l~~~~~-~~s~G~~~sl~~~~~~~~~~ 337 (366)
T PRK07582 270 VRYPGLPGDPAHEVAARQMRRFGGLV-SFELA---------DAAAAER-FVAASRLVVA-ATSFGGVHTSADRRARWGDA 337 (366)
T ss_pred EECCCCCCCccHHHHHhhCCCCcceE-EEEeC---------CHHHHHH-HHHhCCccee-cccCCCccchhhhHHHcCCC
Confidence 21 12 35543 33554 2233333 3444554432 222221
Q ss_pred CCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 128 IEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 128 ~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
..++.||+|++. |+.+..++.|.+++++
T Consensus 338 ~~~~liR~svGl---E~~~dli~dl~~al~~ 365 (366)
T PRK07582 338 VPEGFVRLSCGI---EDTDDLVADLERALDA 365 (366)
T ss_pred CCCCeEEEEecc---CCHHHHHHHHHHHHhh
Confidence 125689999997 4566777777777654
No 206
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=98.03 E-value=0.00062 Score=52.41 Aligned_cols=97 Identities=7% Similarity=-0.024 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC-CccccC-C---ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC
Q 042816 54 ININRERLRRLYVKFVAGLRQLG-IECAKS-N---GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI 128 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~-~---~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~ 128 (163)
++...+++++..+++.+.+.+.+ ++.... . ......+.+++.+ +..++.+.|.+ +||.+.++... .
T Consensus 259 ~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~~~g~------~~~~v~~~L~~-~gI~i~~~~~~--l 329 (361)
T TIGR01366 259 LDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDFVDDI------DAATVAKILRA-NGIVDTEPYRK--L 329 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEECCCcc------CHHHHHHHHHH-CCCeeccCccc--c
Confidence 45566888888999999999885 554421 1 1111223334433 67888888865 79999886422 2
Q ss_pred CCceEEEEEec-CChhHHHHHHHHHHHHHHHh
Q 042816 129 EPGWFSFSFTL-LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 129 ~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~ 159 (163)
+++.+|||+.. .+.++++..++.|.++++++
T Consensus 330 ~~~~vRis~~~~~t~~di~~l~~al~~~~~~~ 361 (361)
T TIGR01366 330 GRNQLRVAMFPAIDPDDVEALTECVDWVVERL 361 (361)
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHHHHHHHhhC
Confidence 35789999965 58889999999999887764
No 207
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=98.03 E-value=0.00039 Score=54.95 Aligned_cols=140 Identities=9% Similarity=0.023 Sum_probs=82.5
Q ss_pred CceeEEEEEecCHHHHHHHHHhhc-ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc----CCcc
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLAR-FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL----GIEC 79 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~~~ 79 (163)
.|+++|++++ ++++.+.+..... .++.+++.+.++.+.|+-- ++ ...+..+++-+++.+.|++. ++-.
T Consensus 294 ~G~p~gav~~-~~~i~~~~~~~~~~T~~g~p~~~aaa~a~L~~l---~~---~~~~~~~~~g~~l~~~L~~l~~~~~~~~ 366 (441)
T PRK05769 294 GGLPLGAVIG-RAELMFLPPGSHANTFGGNPVAAAAALATLEEL---EE---GLLENAQKLGEYLRKELKELKEKYEFIG 366 (441)
T ss_pred CCcccEEEEE-ehhhhhcCCCCCCCCCCcCHHHHHHHHHHHHHH---HH---HHHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence 5789999999 8887653321111 2345777777777666532 21 33444555555555555443 2211
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~ 158 (163)
....-|.++-+.+...-......-...+.+.+++ +||.+.|. +.+.+|++... +++++++++++++.+++.+
T Consensus 367 ~vrg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~Gil~~~~------~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~ 439 (441)
T PRK05769 367 DVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAFK-RGLLLLGA------GKSAIRIIPPLIITEEEADIGLEILEEAIKE 439 (441)
T ss_pred eeecceEEEEEEeccCCccccHHHHHHHHHHHHh-CCcEEecC------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 1122245555555321001111134567777776 89999762 14678988754 5889999999999998865
No 208
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=98.01 E-value=0.00034 Score=53.89 Aligned_cols=128 Identities=13% Similarity=0.092 Sum_probs=71.7
Q ss_pred EEecCHHHHHHHHHhhcc----cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCceeE
Q 042816 12 IYSYNNSVLAAAKKLARF----SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSNGGFY 87 (163)
Q Consensus 12 ~i~~~~~~~~~~~~~~~~----~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~ 87 (163)
++. .+++.+.+.....+ .+.+++...++..+++-- .+..+..++.+.+.++++.+.|...+. .....
T Consensus 221 vl~-~~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l---~~~~~~~~~~l~~l~~~l~~~l~~~~~-----~~~~~ 291 (370)
T PRK05937 221 LLS-SSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFL---SQEGELARKQLFRLKEYFAQKFSSAAP-----GCVQP 291 (370)
T ss_pred EEc-CHHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHH---HhCcHHHHHHHHHHHHHHHHhcCCCCC-----CCEEE
Confidence 455 56666665533221 234555544343333211 111133455666667777766654211 00111
Q ss_pred EEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHHHhhh
Q 042816 88 CWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
+.++.. +...+.+.|.+ +||.+... ..+..+++|+++.. .++++++.+++.|.+++++..+
T Consensus 292 --i~~~~~-------~~~~~~~~L~~-~gi~v~~~---~~~~~~~iRis~~~~~t~edid~l~~~L~~~~~~~~~ 353 (370)
T PRK05937 292 --IFLPGI-------SEQELYSKLVE-TGIRVGVV---CFPTGPFLRVNLHAFNTEDEVDILVSVLATYLEKYQK 353 (370)
T ss_pred --EEeCCh-------hHHHHHHHHHH-CCeeEEee---CCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 233321 45677777755 89988642 22235689999963 3889999999999999877644
No 209
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=97.97 E-value=0.00066 Score=53.25 Aligned_cols=98 Identities=8% Similarity=0.026 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCccccC-CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCC-CC--CCC-C
Q 042816 55 NINRERLRRLYVKFVAGLRQLGIECAKS-NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGS-SC--HCI-E 129 (163)
Q Consensus 55 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~-~f--~~~-~ 129 (163)
.+.++.+.++.+++.+.|++.|+.+..+ ..+..+++.+...- .+...+.+.|. +.||.+.+.. .. ..+ .
T Consensus 285 ~~~~~~l~~~a~~l~~~L~~~G~~~~~~~~~t~i~~v~~~~~~-----~~~~~~~~~L~-~~GI~v~~~~~p~~~~~p~~ 358 (416)
T PRK13034 285 KTYAKQVIANAQALAEVLKERGYDLVSGGTDNHLLLVDLRPKG-----LSGKDAEQALE-RAGITVNKNTVPGDTESPFV 358 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEeccCCCCCcEEEEEcCCCC-----CCHHHHHHHHH-hCCcEEeccCCCCCCcCCCC
Confidence 3557888899999999998888887642 22334555654311 13455556665 4899997521 11 111 1
Q ss_pred CceEEEEEec-----CChhHHHHHHHHHHHHHHH
Q 042816 130 PGWFSFSFTL-----LTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 130 ~~~iRi~~~~-----~~~~~l~~~~~~l~~~~~~ 158 (163)
+..+|+++.. +++++++.+.+.|.+++..
T Consensus 359 ~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~~ 392 (416)
T PRK13034 359 TSGIRIGTPAGTTRGFGEAEFREIANWILDVLDD 392 (416)
T ss_pred CCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 5689999754 3578999999999887653
No 210
>PRK07678 aminotransferase; Validated
Probab=97.92 E-value=0.0008 Score=53.35 Aligned_cols=150 Identities=9% Similarity=0.043 Sum_probs=81.0
Q ss_pred eeEEEEEecCHHHHHHHHHhh--------cccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 7 FRISVIYSYNNSVLAAAKKLA--------RFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~~--------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+-+|.+++ ++++.+.+..-. ..++.++++-.++.+.|+.-+. +...++.++.-...++.+.+.++++++-
T Consensus 289 ~Pi~av~~-~~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~-~~~~~~~~~~g~~l~~~l~~~~~~~~~v 366 (451)
T PRK07678 289 LPLSATAV-KKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMEN-ENLIERSAQLGELLLEQLKEELGEHPLV 366 (451)
T ss_pred cceeEEEE-cHHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 57899999 899988876311 1235566666655555542110 1122222222222223333334444322
Q ss_pred c-ccCCceeEEEeecCCcc--cCC-ChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHH
Q 042816 79 C-AKSNGGFYCWADMSGLI--SSY-SEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIR 153 (163)
Q Consensus 79 ~-~~~~~g~~~~~~~~~~~--~~~-~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~ 153 (163)
. .... |.++-+++...- ..+ +......++..+++ +||.+.+.........+.+|++... +++++++++++++.
T Consensus 367 ~~vrg~-Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~-~Gv~~~~~g~~v~~~~~~lrl~Ppl~it~~eid~~~~~l~ 444 (451)
T PRK07678 367 GDIRGK-GLLVGIELVNDKETKEPADNDKVASVVAACKE-KGLIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLK 444 (451)
T ss_pred EEEEee-ceEEEEEEecCCcccCcCchHHHHHHHHHHHH-CCcEEeecCccccCCCCEEEEECCCcCCHHHHHHHHHHHH
Confidence 2 2233 444445553210 000 11134577777776 8999976322111224679998653 58899999999999
Q ss_pred HHHHHhh
Q 042816 154 RISQTCK 160 (163)
Q Consensus 154 ~~~~~~~ 160 (163)
+++.+++
T Consensus 445 ~~l~~~~ 451 (451)
T PRK07678 445 TALERIK 451 (451)
T ss_pred HHHHhcC
Confidence 9998764
No 211
>PRK06767 methionine gamma-lyase; Provisional
Probab=97.84 E-value=0.0016 Score=50.57 Aligned_cols=139 Identities=16% Similarity=0.141 Sum_probs=83.9
Q ss_pred CCCCceeE-EEEEecCHHHHHHHHHhhc-c--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-C
Q 042816 2 LSLPGFRI-SVIYSYNNSVLAAAKKLAR-F--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-G 76 (163)
Q Consensus 2 ~~~~G~Ri-G~~i~~~~~~~~~~~~~~~-~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g 76 (163)
++.+|.|+ ||+++ ++++++.+.+... . ...+++.+.++...|+.- ....+...++...+.+.|+++ +
T Consensus 209 l~g~g~~~gG~v~~-~~~~i~~~~~~~~~~~g~~~~~~~a~l~~~~L~tl-------~~r~~~~~~~a~~la~~L~~~p~ 280 (386)
T PRK06767 209 IGGHGDVVAGVTIC-KTRALAEKIRPMRKDIGGIMAPFDAWLLLRGLKTL-------AVRMDRHCDNAEKIVSFLKNHDA 280 (386)
T ss_pred ecCCCCceeEEEEe-ChHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCcH-------HHHHHHHHHHHHHHHHHHHcCCC
Confidence 56788885 99999 8887777644332 2 234656555555555542 334456678889999999998 7
Q ss_pred Ccc-cc-----------CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCC------------C-----
Q 042816 77 IEC-AK-----------SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCH------------C----- 127 (163)
Q Consensus 77 ~~~-~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~------------~----- 127 (163)
++. .. ..||+.. +++... ..+...|.+.|.. .++.+.=|.... .
T Consensus 281 v~~v~~p~~~~~~~~~~~~gg~vs-f~l~~~-----~~~~~~f~~~l~~-~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~ 353 (386)
T PRK06767 281 VEGVWYPEGELASRQMKRGGGVIS-FSIKGG-----KEETQAFINDLHF-ITIAVSLGDTETLIQHPATMTHAAIPAELR 353 (386)
T ss_pred ccEEECCCcHHHHHhCCCCCceEE-EEEcCC-----HHHHHHHHHhCCc-cEEecCCCCcCccccCCCccccccCCHHHH
Confidence 653 21 2345443 355421 1356778887743 555543331110 0
Q ss_pred ----CCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 128 ----IEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 128 ----~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
..++.+|+|++- |+.+..++-|.+++.+
T Consensus 354 ~~~gi~~~l~R~svGl---E~~~dl~~dl~~al~~ 385 (386)
T PRK06767 354 QEMGIYDNLIRLSVGL---ESWEDIVSDLEQALKK 385 (386)
T ss_pred HhcCCCCCeEEEEecc---CCHHHHHHHHHHHHhh
Confidence 125789999997 5666777777776653
No 212
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=97.83 E-value=0.0024 Score=49.46 Aligned_cols=101 Identities=9% Similarity=-0.053 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC-CccccC----CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC
Q 042816 54 ININRERLRRLYVKFVAGLRQLG-IECAKS----NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI 128 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~ 128 (163)
++...++.++..+++.+.|++.+ +++..+ .++..+.+.++... .+ ...++...|++ +|+.+..|.. ..
T Consensus 270 ~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~~--~~--~~~~~~~~l~~-~~i~v~~g~~-~~- 342 (378)
T PRK03080 270 LDALIARTAANASVLYDWAEKTPWATPLVADPATRSNTSVTLDFVDAQ--AA--VDAAAVAKLLR-ENGAVDIEPY-RD- 342 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCccEEEEEcCCch--HH--HHHHHHHHHHH-cCCeeccccc-cC-
Confidence 46677888888889999998884 555421 23223444555400 00 23456667776 6888877642 21
Q ss_pred CCceEEEEEec-CChhHHHHHHHHHHHHHHHhhh
Q 042816 129 EPGWFSFSFTL-LTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 129 ~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
..+.+|+|+.. .+.++++..++.|.+++++++.
T Consensus 343 ~~~~vRis~~~~~t~~di~~l~~al~~~~~~~~~ 376 (378)
T PRK03080 343 APNGLRIWCGPTVEPADVEALTPWLDWAFERLKA 376 (378)
T ss_pred CCCcEEEecCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 35789999864 4889999999999999887764
No 213
>PRK05968 hypothetical protein; Provisional
Probab=97.83 E-value=0.0022 Score=49.94 Aligned_cols=138 Identities=12% Similarity=0.026 Sum_probs=82.0
Q ss_pred CCCCc-eeEEEEEecCHHHHHHHHHhhcc---cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-C
Q 042816 2 LSLPG-FRISVIYSYNNSVLAAAKKLARF---SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-G 76 (163)
Q Consensus 2 ~~~~G-~RiG~~i~~~~~~~~~~~~~~~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g 76 (163)
++.+| ++.|+++. ++++++.++..... ...+++.+..+...|+.- .. ..+...++.+.+.+.|+++ +
T Consensus 210 l~g~~~~~gG~i~~-~~~~~~~l~~~~~~~~g~~~~~~~A~~~l~~L~tl---~~----r~~~~~~~a~~la~~L~~~p~ 281 (389)
T PRK05968 210 LGGHSDTVAGVVAG-SKEHIARINAEAYPYLGAKLSPFEAWLLLRGLRTL---PL----RMKAHEASALEIARRLKAHPV 281 (389)
T ss_pred ccCCCCeEEEEEEE-CHHHHHHHHHHHHHhCCCCCChHHHHHHHcccCcH---HH----HHHHHHHHHHHHHHHHHhCCC
Confidence 34433 68999998 89998888765442 346666666666666653 22 2333344577777888887 6
Q ss_pred Ccccc-C------------CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCC--------------C--
Q 042816 77 IECAK-S------------NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCH--------------C-- 127 (163)
Q Consensus 77 ~~~~~-~------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~--------------~-- 127 (163)
++... | -||+ +.+++... .+..+|++.|.. .++.+.=|.... .
T Consensus 282 v~~v~~p~l~~~~~~~~~g~g~~-~sf~~~~~------~~~~~f~~~L~~-~~~~~s~G~~~slv~p~~~~~~~~~~~~~ 353 (389)
T PRK05968 282 VERVCHPALANHPPAGLSGTSGL-FSFIFREG------IDVRAFADALKL-FRLGVSWGGHESLVVPAEVVLQQKAQPNS 353 (389)
T ss_pred ccEEECCCCCCChHHhCCCCceE-EEEEECCH------HHHHHHHHhCCc-cEEecCCCCCCceeeeCcccccccCCHHH
Confidence 54332 3 1233 33455432 256788887743 565544443322 0
Q ss_pred -----CCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 128 -----IEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 128 -----~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
..++.+|+|++- |+.+..++-|.+++++
T Consensus 354 ~~~~gi~~~liR~SvGl---E~~~dl~~dl~~al~~ 386 (389)
T PRK05968 354 AARFGVSPRSVRLHVGL---EGTEALWADLEQALAA 386 (389)
T ss_pred HHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHHH
Confidence 125799999997 5566666666666654
No 214
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=97.82 E-value=0.00077 Score=53.45 Aligned_cols=146 Identities=13% Similarity=0.142 Sum_probs=84.7
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhc----cc---CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLAR----FS---SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG 76 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~----~~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 76 (163)
++|-+.|++.+ ++++.+.+..... +. +++...-.++...++.-. ....+..++++.++.+++.+.|++.|
T Consensus 247 l~GP~Gg~l~~-~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~--~~~~~~~~~~i~~l~~~l~~~L~~~g 323 (452)
T PTZ00094 247 LRGPRSGLIFY-RKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQ--SPEWKEYAKQVLKNAKALAAALEKRG 323 (452)
T ss_pred CCCCCceEEEE-ecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHh--ChhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45566688888 6655444333221 11 233333333444443210 12345667788888999999998777
Q ss_pred CccccCCc-eeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEc-CCCCCCC--CCCceEEEEEecC-----ChhHHHH
Q 042816 77 IECAKSNG-GFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT-PGSSCHC--IEPGWFSFSFTLL-----TEKDIHV 147 (163)
Q Consensus 77 ~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~-pg~~f~~--~~~~~iRi~~~~~-----~~~~l~~ 147 (163)
+++..+.. .-...+.+... + .+...+...| +++||.+. ++..... ..++.+|+++... ++++++.
T Consensus 324 ~~v~~~~~~~~~~~v~~~~~----~-~~~~~~~~~L-~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~ 397 (452)
T PTZ00094 324 YDLVTGGTDNHLVLVDLRPF----G-ITGSKMEKLL-DAVNISVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFKF 397 (452)
T ss_pred cEEecCCCCCceEeecCCcC----C-CCHHHHHHHH-HHCCcEEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHH
Confidence 76654211 22244444321 0 1456677665 55899994 4444321 1268999998543 3688999
Q ss_pred HHHHHHHHHHH
Q 042816 148 VMERIRRISQT 158 (163)
Q Consensus 148 ~~~~l~~~~~~ 158 (163)
.++.|.+++..
T Consensus 398 l~~~l~~~~~~ 408 (452)
T PTZ00094 398 VADFLDRAVKL 408 (452)
T ss_pred HHHHHHHHHHH
Confidence 99999888764
No 215
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=97.78 E-value=0.00059 Score=52.43 Aligned_cols=93 Identities=18% Similarity=0.201 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhc-CCccccCC----ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC--
Q 042816 55 NINRERLRRLYVKFVAGLRQL-GIECAKSN----GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC-- 127 (163)
Q Consensus 55 ~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~-- 127 (163)
+..+++.++..+.+.+.|.+. |+++..+. .+..+++.++.. +..++.+.|.+++||.+.+|..+..
T Consensus 269 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~~~L~~~~gi~v~~g~~~~~~~ 341 (376)
T TIGR01977 269 ANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTVEGI-------DSEEVADILDEKFDIATRTGLHCAPLA 341 (376)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEECCC-------CHHHHHHHHhccCCEEEEcccccchHH
Confidence 566777788888888888876 66665431 233566666642 6678888887745999999876542
Q ss_pred ------CCCceEEEEEec-CChhHHHHHHHHHHH
Q 042816 128 ------IEPGWFSFSFTL-LTEKDIHVVMERIRR 154 (163)
Q Consensus 128 ------~~~~~iRi~~~~-~~~~~l~~~~~~l~~ 154 (163)
...+.+|+++.. .+.++++.+++.|++
T Consensus 342 ~~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 342 HKTIGTFATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred HHHhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 235799999965 477888888888764
No 216
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=97.73 E-value=0.0031 Score=50.16 Aligned_cols=144 Identities=6% Similarity=-0.023 Sum_probs=77.0
Q ss_pred ceeEEEEEecCHHHHHHHHHh-hcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh----cCCccc
Q 042816 6 GFRISVIYSYNNSVLAAAKKL-ARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ----LGIECA 80 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~-~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~g~~~~ 80 (163)
|+-+|.+++ ++++.+..... ...++.+++.-.++.+.|+--+- ++.+++.+ ++-+++.+.|++ +++-..
T Consensus 296 G~pi~av~~-~~~i~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~-~~l~~~~~----~~g~~l~~~L~~l~~~~~~~~~ 369 (457)
T PRK05639 296 GMGLSGVIG-RKELMDLTSGSALLTPAANPVISAAAEATLEIIEE-ENLLKNAL----KVGEFIKKRLLEMKESFEVIGD 369 (457)
T ss_pred CCcceeEEe-hHHHHhhcCCCcccCCCcCHHHHHHHHHHHHHHHH-ccHHHHHH----HHHHHHHHHHHHHHHhCCCEEe
Confidence 677899999 88888732111 11134555554444444432100 12222222 233333333333 332221
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHHHh
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~ 159 (163)
...-|.++-+++......+.......+.+.+++ +|+.+.+. + ...+.+|+.... ++++++++++++|.+++.+.
T Consensus 370 VrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~-~Gv~~~~~---g-~~~~~lr~~Ppl~it~~~id~~~~~l~~~l~~~ 444 (457)
T PRK05639 370 VRGKGLMIGVEIVKENGKPDPELTGKICWRAFE-LGLILPSY---G-MFGNVIRITPPLVITKEIAEKGLEIMERAIKDA 444 (457)
T ss_pred eccceeEEEEEEecCCCCCCHHHHHHHHHHHHh-CCeEEeec---C-CCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHH
Confidence 223344555555221101111234577777776 89999764 1 114789998864 58899999999999998765
Q ss_pred h
Q 042816 160 K 160 (163)
Q Consensus 160 ~ 160 (163)
.
T Consensus 445 ~ 445 (457)
T PRK05639 445 L 445 (457)
T ss_pred H
Confidence 4
No 217
>PRK06541 hypothetical protein; Provisional
Probab=97.72 E-value=0.0024 Score=50.84 Aligned_cols=144 Identities=12% Similarity=0.078 Sum_probs=83.5
Q ss_pred Cce-eEEEEEecCHHHHHHHHHhhc------ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-C
Q 042816 5 PGF-RISVIYSYNNSVLAAAKKLAR------FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-G 76 (163)
Q Consensus 5 ~G~-RiG~~i~~~~~~~~~~~~~~~------~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g 76 (163)
.|+ ++|++++ ++++.+.+..... .++.+++.-.++.+.|+.- .+ +...+.+.++.+++.+.|+++ .
T Consensus 294 ~G~~pigav~~-~~~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l---~~--~~~~~~~~~~g~~l~~~L~~l~~ 367 (460)
T PRK06541 294 SGYSPLGAMIA-SDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIF---ER--EGLLDHVRDNEPAFRATLEKLLD 367 (460)
T ss_pred CCccceeEEEE-cHHHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHHhhc
Confidence 465 9999999 8999888764321 1234555555444444321 11 123455556666666666554 2
Q ss_pred --C-ccccCCceeEEEeecCCc--ccCC--C-hh---hHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhH
Q 042816 77 --I-ECAKSNGGFYCWADMSGL--ISSY--S-EK---GELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKD 144 (163)
Q Consensus 77 --~-~~~~~~~g~~~~~~~~~~--~~~~--~-~~---~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~ 144 (163)
+ ......|.+ +-+++... .+.+ . .. -...+...|++ +||.+.|.. . +.+.+||+... +++++
T Consensus 368 ~~~v~~vrg~Gl~-~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~~-~---g~~~lrl~Ppl~~t~~~ 441 (460)
T PRK06541 368 LPIVGDVRGDGYF-YGIELVKDKATKETFTDDESERLLRGFLSPALFE-AGLYCRADD-R---GDPVVQLAPPLISGQEE 441 (460)
T ss_pred CCCeEEEEecceE-EEEEEecCcccccCCcchhhhhhHHHHHHHHHHh-CCeEEEecC-C---CCCEEEEECCCCCCHHH
Confidence 2 223445544 44455321 0000 0 00 01256677776 899998721 1 24789999873 48999
Q ss_pred HHHHHHHHHHHHHHhh
Q 042816 145 IHVVMERIRRISQTCK 160 (163)
Q Consensus 145 l~~~~~~l~~~~~~~~ 160 (163)
+++++++|.+++.+..
T Consensus 442 id~~~~~l~~~l~~~~ 457 (460)
T PRK06541 442 FDEIEQILRSVLTEAW 457 (460)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987654
No 218
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=97.70 E-value=0.0014 Score=50.39 Aligned_cols=121 Identities=19% Similarity=0.228 Sum_probs=84.0
Q ss_pred CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCccccC---CceeEEEeecCCcccCCChhhHH
Q 042816 31 SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL--GIECAKS---NGGFYCWADMSGLISSYSEKGEL 105 (163)
Q Consensus 31 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~ 105 (163)
+.|.+.-.++..+++.. .+.++.....+...++.+.+.|.+. .+.+... .-...+.+.+|.. +.+
T Consensus 238 Tenv~~Ivg~~~A~~~a---~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv-------~gE 307 (386)
T COG1104 238 TENVPGIVGFGKAAEIA---VEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGV-------EGE 307 (386)
T ss_pred CccHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCCC-------cHH
Confidence 35666666666666654 4556777777888888899988875 3333322 2223344555542 556
Q ss_pred HHHHHHHHhcCeEEcCCCCCCCC-----------------CCceEEEEEecC-ChhHHHHHHHHHHHHHHHhhhc
Q 042816 106 ELWDKLLNVAKVNVTPGSSCHCI-----------------EPGWFSFSFTLL-TEKDIHVVMERIRRISQTCKSH 162 (163)
Q Consensus 106 ~~~~~l~~~~gi~v~pg~~f~~~-----------------~~~~iRi~~~~~-~~~~l~~~~~~l~~~~~~~~~~ 162 (163)
.+...| +.+||.+..|+.+... ..+.+|||++.. ++++++.+++.+.+++++++..
T Consensus 308 ~ll~~L-~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~~lr~~ 381 (386)
T COG1104 308 SLLLAL-DLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKRLREL 381 (386)
T ss_pred HHHHhc-cccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 666655 5589999999887543 147999999863 7789999999999999998763
No 219
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=97.69 E-value=0.0023 Score=49.33 Aligned_cols=136 Identities=6% Similarity=0.020 Sum_probs=87.4
Q ss_pred eEEEEEecCHHHHHHHHHh-----------hc---ccCCChHHHHHHHHhcCChHHHHH--HHHHHHHHHHHHHHHHHHH
Q 042816 8 RISVIYSYNNSVLAAAKKL-----------AR---FSSVSAPSQNLLVSMLSDTKFVQK--FININRERLRRLYVKFVAG 71 (163)
Q Consensus 8 RiG~~i~~~~~~~~~~~~~-----------~~---~~~~s~~~q~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~ 71 (163)
.+|++++ ++++.+.+... .. +.+++...-.++.++|+.- .+ -++...+++++..+++.+.
T Consensus 202 Glg~l~~-s~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i---~~~gG~e~i~~r~~~l~~~l~~~ 277 (360)
T PRK05355 202 GLTIVIV-REDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWL---KEQGGVAAMEKRNQEKAALLYDA 277 (360)
T ss_pred ceEEEEE-CHHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHH---HHccCHHHHHHHHHHHHHHHHHH
Confidence 4678888 77776654331 11 2345555555555555432 22 2678888999999999999
Q ss_pred hhhcCCc-c-cc--CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHH
Q 042816 72 LRQLGIE-C-AK--SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIH 146 (163)
Q Consensus 72 l~~~g~~-~-~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~ 146 (163)
|++.++. . .. ...+.-+.+.+|..+ +..++...+.+ .|+.+.+|.. ..+.+|+|+.. .+.++++
T Consensus 278 l~~~~~~~~~~~~~~rs~~v~sf~~~~~~------~~~~~~~~~~~-~Gi~~~~~~~----~~g~vRiS~~~~nt~eei~ 346 (360)
T PRK05355 278 IDSSDFYRNPVAPEDRSRMNVPFTLADEE------LDKKFLAEAKA-AGLVGLKGHR----SVGGMRASIYNAMPLEGVQ 346 (360)
T ss_pred HHhCCCcccCCChhhcCCcEEEEEcCChH------HHHHHHHHHHH-CCCcccCCCC----ccCcEEEECCCCCCHHHHH
Confidence 9998642 2 11 123233445566532 34566666665 8999877763 24789999865 4689999
Q ss_pred HHHHHHHHHHHH
Q 042816 147 VVMERIRRISQT 158 (163)
Q Consensus 147 ~~~~~l~~~~~~ 158 (163)
..++.|++++..
T Consensus 347 ~l~~~l~~~~~~ 358 (360)
T PRK05355 347 ALVDFMKEFERR 358 (360)
T ss_pred HHHHHHHHHHHh
Confidence 999999887654
No 220
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=97.69 E-value=0.0031 Score=48.67 Aligned_cols=66 Identities=15% Similarity=0.084 Sum_probs=45.5
Q ss_pred CCCCc-eeEEEEEecCH-HHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 2 LSLPG-FRISVIYSYNN-SVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 2 ~~~~G-~RiG~~i~~~~-~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
+|.+| ++.||+++ ++ ++++.+...... .+++++.+.++...++.- ....+...++...+.+.|+++
T Consensus 188 l~g~~~~~gG~v~~-~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~tl-------~~r~~~~~~na~~la~~L~~~ 257 (369)
T cd00614 188 IGGHSDVIAGVVVG-SGEALIQRLRFLRLALGTILSPFDAWLLLRGLKTL-------PLRMERHSENALKVAEFLEKH 257 (369)
T ss_pred ccCCCCceEEEEEe-CcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCCCH-------HHHHHHHHHHHHHHHHHHHcC
Confidence 34444 89999999 55 888888877653 456666666666666542 233445566888888889887
No 221
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=97.67 E-value=0.0041 Score=49.49 Aligned_cols=137 Identities=11% Similarity=0.068 Sum_probs=81.1
Q ss_pred eeEEEEEecCHHHHHHHHHhh-cc---cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc----C--
Q 042816 7 FRISVIYSYNNSVLAAAKKLA-RF---SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL----G-- 76 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~~-~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g-- 76 (163)
+-+|.+++ .+++.+.+.... .+ ++.++++-.++.+.|+.- ++ +...+..+++-+++.+.|+++ .
T Consensus 307 ~Pigav~~-~~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i---~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~~ 380 (459)
T PRK11522 307 MPIGATIA-TEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVL---LE--QNLPAQAEQKGDYLLDGFRQLAREYPDL 380 (459)
T ss_pred ccceeEEE-cHHHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHH---hc--chHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 57899999 888888764221 11 234666655554444321 00 112233333444444444433 1
Q ss_pred CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 77 IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 77 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
+.-... -|.++-+++... .....+++.|++ +||.+.+.. .+.+.+|++.+. +++++++++++++.++
T Consensus 381 i~~VrG-~Gl~~giel~~~------~~~~~i~~~l~~-~Gvl~~~~~----~~~~~lr~~Ppl~~t~~~id~~l~~l~~~ 448 (459)
T PRK11522 381 VQEARG-KGMLMAIEFVDN------EIGYNFASEMFR-QRVLVAGTL----NNAKTIRIEPPLTLTIEQCEQVLKAARKA 448 (459)
T ss_pred eeeEEe-ceeEEEEEecCc------hHHHHHHHHHHH-CCeEEEecC----CCCCEEEEECCccCCHHHHHHHHHHHHHH
Confidence 111222 356666777542 135678888877 899997632 125789998864 5889999999999999
Q ss_pred HHHhhh
Q 042816 156 SQTCKS 161 (163)
Q Consensus 156 ~~~~~~ 161 (163)
+.++.+
T Consensus 449 l~~~~~ 454 (459)
T PRK11522 449 LAAMRV 454 (459)
T ss_pred HHHHHH
Confidence 887654
No 222
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=97.59 E-value=0.0073 Score=46.74 Aligned_cols=120 Identities=15% Similarity=0.121 Sum_probs=81.0
Q ss_pred CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCC---ceeEEEeecCCcccCCChhhHHHH
Q 042816 31 SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSN---GGFYCWADMSGLISSYSEKGELEL 107 (163)
Q Consensus 31 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~ 107 (163)
+++...-.++.++|+.-. .+=++..-+.++++.+++.+.+...|++..... .....-+.+|+.+ ++.+.
T Consensus 242 Tppv~~i~aL~~al~~i~--~EGle~r~~RH~~~~~a~r~~~~alGl~~~~~~~~~s~tvta~~~P~g~------~~~~~ 313 (383)
T COG0075 242 TPPVNLIYALREALDLIL--EEGLEARIARHRRLAEALRAGLEALGLELFADPERRSPTVTAIKVPEGV------DDKKV 313 (383)
T ss_pred CCCHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHcCCccccCcccCCCceEEEECCCCC------CcHHH
Confidence 344433445555554321 122577788889999999999999998776511 2223345667654 34444
Q ss_pred HHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHHHHHHHHHHHhh
Q 042816 108 WDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 108 ~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~~~l~~~~~~~~ 160 (163)
...+++++|+.+.+|..-. ....+||+.- ..+..++..++..|..++.++.
T Consensus 314 ~~~~~~~~g~~i~gg~~~l--~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~g 365 (383)
T COG0075 314 RRALLKEYGVEIAGGQGPL--KGKIFRIGHMGNVRPEDVLAALAALEAALRELG 365 (383)
T ss_pred HHHHHHhCCEEeccccccc--CccEEEEecCccCCHHHHHHHHHHHHHHHHHcC
Confidence 4467787899999875433 3579999984 4588899999999999998764
No 223
>PRK14012 cysteine desulfurase; Provisional
Probab=97.57 E-value=0.0017 Score=50.59 Aligned_cols=96 Identities=20% Similarity=0.303 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc-CCcccc-----CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC
Q 042816 54 ININRERLRRLYVKFVAGLRQL-GIECAK-----SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC 127 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~-g~~~~~-----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~ 127 (163)
.....+..++..+++.+.|+++ ++.+.. ....+++|+.+.. ..++...| .++.|.+|..|..
T Consensus 263 ~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l---~~~~i~~g~~~~~ 330 (404)
T PRK14012 263 MATENERIRALRDRLWNGIKDIEEVYLNGDLEQRVPGNLNVSFNYVE---------GESLIMAL---KDLAVSSGSACTS 330 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCEEEEEEeCcC---------HHHHHHhC---CCeEEEchhhhCC
Confidence 4456677777788888888776 544431 1234455655432 24455544 3677777765532
Q ss_pred C-----------------CCceEEEEEec-CChhHHHHHHHHHHHHHHHhhh
Q 042816 128 I-----------------EPGWFSFSFTL-LTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 128 ~-----------------~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
. ..+.+|+++.. .++++++..++.|+++++.++.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~~~~~ 382 (404)
T PRK14012 331 ASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYAIELVRKSIGKLRE 382 (404)
T ss_pred CCCCCCHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 1 14789999975 4888999999999998887754
No 224
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=97.54 E-value=0.0044 Score=47.70 Aligned_cols=132 Identities=21% Similarity=0.250 Sum_probs=80.0
Q ss_pred CCCceeEEEEEecCHHHHHHHHHhhccc-----------------------CCChHHHHHHHHhcCChHHHHHHHHHHHH
Q 042816 3 SLPGFRISVIYSYNNSVLAAAKKLARFS-----------------------SVSAPSQNLLVSMLSDTKFVQKFININRE 59 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~~~~~~~~~~-----------------------~~s~~~q~~~~~~l~~~~~~~~~~~~~~~ 59 (163)
|-+| +|++.+ ++++++.+......+ +++.+...++...++.-. +.-+++.++
T Consensus 204 gp~G--~g~l~v-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~--~~g~~~i~~ 278 (371)
T PF00266_consen 204 GPPG--LGFLYV-RPEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLE--EIGIERIRE 278 (371)
T ss_dssp SSST--EEEEEE-EHHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCCc--hhhhee-hhhhhhccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhh--ccccccchh
Confidence 4455 699999 888888874322211 234443444444443221 334577788
Q ss_pred HHHHHHHHHHHHhhhc-CCcccc----CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC------C
Q 042816 60 RLRRLYVKFVAGLRQL-GIECAK----SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC------I 128 (163)
Q Consensus 60 ~~~~~~~~l~~~l~~~-g~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~------~ 128 (163)
+..+..+++.+.|.++ ++.+.. +..+-.+.+.++.. +..++.+.|.+ .||.+..|..... .
T Consensus 279 ~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~L~~-~~I~~~~G~~~~~~~~~~~~ 350 (371)
T PF00266_consen 279 RIRELAEYLREALEELPGIEVLGPDDEPRRPSIVSFNLPGS-------DADDVVKYLEE-RGIAVSTGSACAGPSLDILG 350 (371)
T ss_dssp HHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTEEEEEETTS-------SHHHHHHHHHH-HTEEEEESTTTCHHHHHHHH
T ss_pred hhhhHHHHHHhhhhcCCceeEeeecccccccceEEEeecCC-------CHHHHHHHHhh-cCEEEeccCcccHHHHHHhC
Confidence 8888899999999888 555532 22233344455442 67888888877 5999999776541 0
Q ss_pred CCceEEEEEecC-ChhHHHH
Q 042816 129 EPGWFSFSFTLL-TEKDIHV 147 (163)
Q Consensus 129 ~~~~iRi~~~~~-~~~~l~~ 147 (163)
-.+.+|+|+... +.+++++
T Consensus 351 ~~~~iRvS~~~~nt~~dv~~ 370 (371)
T PF00266_consen 351 MGGVIRVSLHYYNTEEDVDR 370 (371)
T ss_dssp TTTEEEEE-GTTSSHHHHHH
T ss_pred CCCEEEEeccCCCCHHHHhh
Confidence 148999998753 6666654
No 225
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=97.54 E-value=0.003 Score=49.96 Aligned_cols=144 Identities=18% Similarity=0.213 Sum_probs=93.5
Q ss_pred CCCCceeEEEEE-ecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc----C
Q 042816 2 LSLPGFRISVIY-SYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL----G 76 (163)
Q Consensus 2 ~~~~G~RiG~~i-~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g 76 (163)
+.+||. |+++ +.|+++++.+.........+++.|.+...++..+ .+.++++.+.+.++++++.+.|+++ |
T Consensus 275 l~~pg~--Gg~I~~~d~el~~~i~~~y~g~~~~s~~~~~~~~ll~~G---~~g~~~li~~~~~~a~~l~~~L~~l~~~~~ 349 (444)
T TIGR03531 275 FMVPVG--GAIIYSFDENFIQEISKSYPGRASASPSLDVLITLLSLG---SKGYLELLKERKEMYKYLKELLQKLAERHG 349 (444)
T ss_pred CCCCCC--EEEEEECCHHHHHHHHHhccCCCCChHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 567777 6655 5588898888765443445678888888888776 5677888889999999999888775 5
Q ss_pred CccccC-CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeE----EcCCC-------CC---CCCC----CceEEEEE
Q 042816 77 IECAKS-NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVN----VTPGS-------SC---HCIE----PGWFSFSF 137 (163)
Q Consensus 77 ~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~----v~pg~-------~f---~~~~----~~~iRi~~ 137 (163)
..+... +..+.+-+.+.... + .+...+...|.. .+|. |.||. .| +... -.|+-++.
T Consensus 350 ~~~~~~~~n~is~~~~~~~~~---~-~~~~~~g~~l~~-~~v~g~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 424 (444)
T TIGR03531 350 ERLLDTPENPISSAMTLSTLK---G-KDPTMLGSMLYS-RRVTGPRVVTNGDSKTVGGCEFKGYGSHTSNYPCPYITAAA 424 (444)
T ss_pred cEeecCCCCceeEEEeccccc---c-cCHHHHHHHHHh-CCCCCceeecCCCceEECCEEeecccccccCCCchhHHHHH
Confidence 555543 44444555554321 0 256777777754 5553 45666 22 2111 12554443
Q ss_pred ec-CChhHHHHHHHHHHHH
Q 042816 138 TL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 138 ~~-~~~~~l~~~~~~l~~~ 155 (163)
+- .+.++++.++++|.++
T Consensus 425 ~~g~~~~~~~~~~~~l~~~ 443 (444)
T TIGR03531 425 AIGMTKEDVDTFVSRLEKS 443 (444)
T ss_pred HhCCcHHHHHHHHHHHhhc
Confidence 21 4779999999999875
No 226
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=97.52 E-value=0.0035 Score=50.06 Aligned_cols=97 Identities=14% Similarity=0.125 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCccccCC-ceeEEEeec-CCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC---CC
Q 042816 55 NINRERLRRLYVKFVAGLRQLGIECAKSN-GGFYCWADM-SGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC---IE 129 (163)
Q Consensus 55 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~g~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~---~~ 129 (163)
+..++...++.+++.+.|.+.|+++..+. .+-.+++++ +..+ +..++.+.|. ..||.+..+.-.+. ..
T Consensus 313 ~~~~~~~~~na~~L~~~L~~~G~~l~~~~t~~hi~lv~~~~~gi------~~~~~~~~L~-~~~I~~nk~~~p~~~~~~~ 385 (475)
T PLN03226 313 KAYQKQVKANAAALANRLMSKGYKLVTGGTDNHLVLWDLRPLGL------TGSRVEKVLD-LAHITLNKNAVPGDSSALV 385 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEcCCCCCCEEEEEccCCCC------CHHHHHHHHH-HCCCEECCCCCCCCcccCC
Confidence 45678888899999999988888877532 234566787 4333 5667777665 59999987642221 12
Q ss_pred CceEEEEEec-----CChhHHHHHHHHHHHHHHH
Q 042816 130 PGWFSFSFTL-----LTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 130 ~~~iRi~~~~-----~~~~~l~~~~~~l~~~~~~ 158 (163)
+..+|++... +.++++++..+.|.+++..
T Consensus 386 ~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~~~ 419 (475)
T PLN03226 386 PGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVTI 419 (475)
T ss_pred CCCcccCcHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 5668885432 4668888888888887763
No 227
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=97.51 E-value=0.012 Score=45.61 Aligned_cols=99 Identities=12% Similarity=0.020 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC-CccccC----CceeEEEeecCCc-cc----CCChhhHHHHHHHHHHhcCeEEcCCC
Q 042816 54 ININRERLRRLYVKFVAGLRQLG-IECAKS----NGGFYCWADMSGL-IS----SYSEKGELELWDKLLNVAKVNVTPGS 123 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~----~~g~~~~~~~~~~-~~----~~~~~~~~~~~~~l~~~~gi~v~pg~ 123 (163)
++...++++++.+++++.+++.| +..... .+.....+.++.. +. .++..-..++.+.|.+ +||.+.+|.
T Consensus 261 le~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~i~~G~ 339 (374)
T TIGR01365 261 LKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVDPAIDALDEDAQADFAKELISTLEK-EGVAYDIGS 339 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCCccccccccchhhHHHHHHHHHHHH-CCEEEeccc
Confidence 67888899999999999999997 666542 1232333455332 10 0000004677777765 799999876
Q ss_pred CCCCCCCceEEEEEe-cCChhHHHHHHHHHHHH
Q 042816 124 SCHCIEPGWFSFSFT-LLTEKDIHVVMERIRRI 155 (163)
Q Consensus 124 ~f~~~~~~~iRi~~~-~~~~~~l~~~~~~l~~~ 155 (163)
.-. .+..+||+.. .++.++++..++.|.=+
T Consensus 340 ~~~--~~~~fRIg~~G~i~~~di~~l~~~l~~~ 370 (374)
T TIGR01365 340 YRD--APSGLRIWCGATVEKSDLECLCPWLDWA 370 (374)
T ss_pred ccc--CCCceEEecCCcCCHHHHHHHHHHHHHH
Confidence 432 2578999884 46888888888877643
No 228
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=97.50 E-value=0.0061 Score=47.15 Aligned_cols=137 Identities=16% Similarity=0.199 Sum_probs=85.8
Q ss_pred CceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc----C-C
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL----G-I 77 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g-~ 77 (163)
.|+-+|.+++ .+.+.+.+.--.. .++-|+++-+++.+.++--.. ++.+++.++ +-+++.+.|+++ + +
T Consensus 257 GG~PigA~la-~~~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~~-e~ll~~v~~----~g~~~~~~L~~l~~~~~~v 330 (404)
T COG4992 257 GGFPIGAMLA-TEEIASAFTPGDHGSTFGGNPLACAVALAVLEVLLE-EGLLENVRE----KGEYLLQRLRELKRRYPLV 330 (404)
T ss_pred CCccceeeEE-chhhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHcc-hhHHHHHHH----HHHHHHHHHHHHhhcCCce
Confidence 3688999999 6555554332222 256788887766655543111 233334333 444455555443 2 3
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRIS 156 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~ 156 (163)
+-.+. -|+.+=+++.... ...++++.+.+ +|+++.+.. ++-+|+.-.. ++++++++++++|.+++
T Consensus 331 ~~vRG-~GLmiGiel~~~~------~a~~~~~~~~~-~gvL~~~a~------~~ViR~~PpL~i~~eei~~~~~~l~~~l 396 (404)
T COG4992 331 KEVRG-RGLMIGIELKEPY------RARDIVRALRE-EGVLVLPAG------PNVIRFLPPLVITEEEIDEALDALERAL 396 (404)
T ss_pred eeeec-ceeEEEEEecCcc------cHHHHHHHHHH-CCeEEecCC------CCeEEecCCccCCHHHHHHHHHHHHHHH
Confidence 33333 3566667776521 36889988876 899998632 5688988754 58999999999999999
Q ss_pred HHhhh
Q 042816 157 QTCKS 161 (163)
Q Consensus 157 ~~~~~ 161 (163)
+....
T Consensus 397 ~~~~~ 401 (404)
T COG4992 397 AAASA 401 (404)
T ss_pred HHhhh
Confidence 86543
No 229
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=97.46 E-value=0.00023 Score=54.32 Aligned_cols=103 Identities=15% Similarity=0.144 Sum_probs=64.9
Q ss_pred CChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCC-cee--EEEeecCCcccCCChhhHHHHH
Q 042816 32 VSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSN-GGF--YCWADMSGLISSYSEKGELELW 108 (163)
Q Consensus 32 ~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~g~--~~~~~~~~~~~~~~~~~~~~~~ 108 (163)
++.....++...++.- ....+...++++++.+++.+.|++.|+++..+. ... .+-+.++. .+..++.
T Consensus 240 ~~~~~~~al~~al~~~---~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~~-------~~~~~v~ 309 (353)
T TIGR03235 240 LPVHLIVGMGEAAEIA---RRNAQAWEVKLRAMRNQLRDALQTLGVKLNGDPAETIPHILNFSIDG-------VNSEALI 309 (353)
T ss_pred CChHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHhccCCeEEeCCcccccCCEEEEEeCC-------cCHHHHH
Confidence 4444444444444421 334567788999999999999988887775332 211 22233343 1567777
Q ss_pred HHHHHhcCeEEcCCCCCCCCC--CceEEEEEecCChhHHHH
Q 042816 109 DKLLNVAKVNVTPGSSCHCIE--PGWFSFSFTLLTEKDIHV 147 (163)
Q Consensus 109 ~~l~~~~gi~v~pg~~f~~~~--~~~iRi~~~~~~~~~l~~ 147 (163)
+.| + .+|.|.+|..|.... +.++|.+++. ++++...
T Consensus 310 ~~L-~-~~i~v~~g~~~~~~~~~~~~~l~~~g~-~~~~~~~ 347 (353)
T TIGR03235 310 VNL-R-ADAAVSTGSACSSSKYEPSHVLQAMGL-DTDRARG 347 (353)
T ss_pred HHH-h-CCeEEEchhhcCCCCCCCCHHHHHcCC-CHHHhCc
Confidence 766 5 489999999986533 4578888886 6555443
No 230
>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.0011 Score=51.69 Aligned_cols=133 Identities=16% Similarity=0.151 Sum_probs=86.9
Q ss_pred EEEEecCHHHHHHHHHhhcc----cC-CChHHHHHHHHh---cC-ChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 10 SVIYSYNNSVLAAAKKLARF----SS-VSAPSQNLLVSM---LS-DTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 10 G~~i~~~~~~~~~~~~~~~~----~~-~s~~~q~~~~~~---l~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
||+.+ ++++++.++..... .+ +++++|+....+ .. ++ ...-++..+.+.++..++...+++.|+-+.
T Consensus 354 Gyiag-sk~lid~lrt~s~~~~yat~~sppvaqq~~ssl~~i~G~dg---t~~g~~k~~~l~~ns~yfr~~l~~~gfivy 429 (519)
T KOG1357|consen 354 GYIAG-SKELIDYLRTPSPSALYATSLSPPVAQQILTSVKHIMGEDG---TNRGRQKIERLAENSRYFRWELQKMGFIVY 429 (519)
T ss_pred ceecC-cHHHHhhhccCCCceeecccCChHHHHHHHHHHHhhcCCCc---ccHHHHHHHHHHhhhHHHHHhhhcCcEEEe
Confidence 78888 99999998877662 22 344456544332 22 22 355678888899999999999999988887
Q ss_pred cCCceeEE--EeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC--CCCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 81 KSNGGFYC--WADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC--IEPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 81 ~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~--~~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
..+.+..+ .+-.|.. ...+.+.|++ +++.+.-+ .|.. .-....|+|.+. +..|++..+++.+.++
T Consensus 430 G~~dSpVvplll~~~~k--------~~~f~r~~l~-~nigvVvv-gfPatpl~e~r~R~c~Sa~ht~e~ld~~l~~i~~~ 499 (519)
T KOG1357|consen 430 GNNDSPVVPLLLYGPAK--------IVAFSREMLE-RNIGVVVV-GFPATPLLESRARFCLSASHTKEDLDRALEVIDRV 499 (519)
T ss_pred cCCCCCcceeeecCccc--------ccHHHHHHHh-cCceEEEE-eCCCchHHHhHHHhhhcccccHHHHHHHHHHHhhh
Confidence 76666332 2233432 3678878887 55555432 2332 226788999976 4667777777776654
Q ss_pred H
Q 042816 156 S 156 (163)
Q Consensus 156 ~ 156 (163)
-
T Consensus 500 g 500 (519)
T KOG1357|consen 500 G 500 (519)
T ss_pred c
Confidence 3
No 231
>PRK06917 hypothetical protein; Provisional
Probab=97.40 E-value=0.014 Score=46.36 Aligned_cols=145 Identities=12% Similarity=0.049 Sum_probs=78.9
Q ss_pred eEEEEEecCHHHHHHHHHhhc------ccCCChHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-
Q 042816 8 RISVIYSYNNSVLAAAKKLAR------FSSVSAPSQNLLVSMLSD---TKFVQKFININRERLRRLYVKFVAGLRQLGI- 77 (163)
Q Consensus 8 RiG~~i~~~~~~~~~~~~~~~------~~~~s~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~- 77 (163)
-+|.+++ .+++.+.+..... .++.+++.-.++.+.|+- +.. .+..++.-+.+.+..+ +..+++++
T Consensus 277 Pi~a~~~-~~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l-~~~~~~~g~~l~~~L~---~l~~~~~~i 351 (447)
T PRK06917 277 PIAATVV-SDRVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEKHNL-PEKAAEKGEYLIKGLQ---KVQQQSTII 351 (447)
T ss_pred ceEEEEE-cHHHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHH---HHHhcCCCE
Confidence 6899999 8899888764221 134566666655555542 211 2233333333332222 22222332
Q ss_pred ccccCCceeEEEeecCC-c-ccCC---ChhhHHHHHHHHHHhcCeEEcCCC-CCCCCCCceEEEEEec-CChhHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSG-L-ISSY---SEKGELELWDKLLNVAKVNVTPGS-SCHCIEPGWFSFSFTL-LTEKDIHVVME 150 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~-~-~~~~---~~~~~~~~~~~l~~~~gi~v~pg~-~f~~~~~~~iRi~~~~-~~~~~l~~~~~ 150 (163)
.-.... |+++-+++.. . .+.+ ...-...+.+.+++ +||.+.|+. .......+.+|++... +++++++++++
T Consensus 352 ~~vrG~-Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~~~~~~g~~~~~i~l~Ppl~it~~eid~~~~ 429 (447)
T PRK06917 352 GDVRGK-GLLIGVEFVADKKTKQPFSKSQAVASELISVAAK-NGLLLYPAVAGQDGKEGDAVIIAPPMTITYSELDELLS 429 (447)
T ss_pred EEEeec-ceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHh-CCcEEEecccccCCCCCCEEEEECCCcCCHHHHHHHHH
Confidence 222233 4455555521 1 0000 00124567777776 999998742 1111124688988652 48899999999
Q ss_pred HHHHHHHHh
Q 042816 151 RIRRISQTC 159 (163)
Q Consensus 151 ~l~~~~~~~ 159 (163)
++.+++.++
T Consensus 430 ~l~~~l~~~ 438 (447)
T PRK06917 430 IFAKSVEEM 438 (447)
T ss_pred HHHHHHHHH
Confidence 999988765
No 232
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=97.40 E-value=0.013 Score=46.23 Aligned_cols=145 Identities=6% Similarity=0.003 Sum_probs=87.6
Q ss_pred ceeEEEEEecCHHHHHHHHHhhc-ccCCChHHHHHHHHhcCChH--HHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccC
Q 042816 6 GFRISVIYSYNNSVLAAAKKLAR-FSSVSAPSQNLLVSMLSDTK--FVQKFININRERLRRLYVKFVAGLRQLGIECAKS 82 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ 82 (163)
|+-+|-++. .+++.+....... .+.-|+++-+++...|+.-+ -+.++..++-++++++...+.+.... +--.+
T Consensus 296 G~Pl~avv~-r~ei~~~~~g~~~~Tf~GNpva~Aaa~AvL~vie~e~L~~~a~~~G~~l~~~L~~l~~~~~~--IgdVR- 371 (447)
T COG0160 296 GLPLSAVVG-RAEIMDWPPGGHGGTFGGNPVACAAALAVLDVIEEENLLERAAELGEYLRDRLEELQEKHPL--IGDVR- 371 (447)
T ss_pred CCceeEEec-cHHhcccCCcccCCCCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhcCc--eeccc-
Confidence 888999999 8888773222222 36778888777766665321 11233333333333333333333221 11122
Q ss_pred CceeEEEeecCCc--ccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHHHh
Q 042816 83 NGGFYCWADMSGL--ISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 83 ~~g~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~ 159 (163)
--|+++-+++-.. .+.+...-...+++.+.+ +|+.+.++-.+ .+.+||...- ++++++++++++|.+++.+.
T Consensus 372 G~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~-~Glil~~~G~~----~nviRi~PPL~is~e~~d~~l~il~~al~~~ 446 (447)
T COG0160 372 GLGLMIGVELVKDRDTKEPDAELAAKIVARAFE-RGLLLLTCGPH----GNVLRILPPLTISDEELDEGLDILEEALKEA 446 (447)
T ss_pred ccceEEEEEEecCCCCCCCCHHHHHHHHHHHHH-cCCEEeccCCC----CcEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 2356777776532 222333456788888877 89988875433 4689998753 58899999999999998764
No 233
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=97.40 E-value=0.0037 Score=48.73 Aligned_cols=116 Identities=11% Similarity=0.182 Sum_probs=72.4
Q ss_pred CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCccccCC-----ceeEEEeecCCcccCCChhhH
Q 042816 31 SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIECAKSN-----GGFYCWADMSGLISSYSEKGE 104 (163)
Q Consensus 31 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~ 104 (163)
+++.....++...++.- .+.++...+++++.++.+.+.|+++ ++.+..+. +.+ .+.++. + +.
T Consensus 241 t~~~~~~~al~~al~~~---~~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~~--~v~f~~-~------~~ 308 (402)
T TIGR02006 241 TLPTHQIVGMGEAFRIA---KEEMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRVPGNL--NVSFNY-V------EG 308 (402)
T ss_pred CccHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeE--EEEEeC-c------CH
Confidence 34444445555555432 3456777788899999999999876 55543211 111 122332 1 33
Q ss_pred HHHHHHHHHhcCeEEcCCCCCCCC-----------------CCceEEEEEec-CChhHHHHHHHHHHHHHHHhhh
Q 042816 105 LELWDKLLNVAKVNVTPGSSCHCI-----------------EPGWFSFSFTL-LTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 105 ~~~~~~l~~~~gi~v~pg~~f~~~-----------------~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
.++...| .++.+..|..+... ..+++|+|+.. .+.++++..++.|.++++.++.
T Consensus 309 ~~~~~~l---~~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~~~~~ 380 (402)
T TIGR02006 309 ESLIMAL---KDLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKSAIDKLRE 380 (402)
T ss_pred HHHHHhc---CCEEEechhhcCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4454433 48888887665321 13799999975 3778999999999998877643
No 234
>PRK07046 aminotransferase; Validated
Probab=97.38 E-value=0.012 Score=46.88 Aligned_cols=139 Identities=15% Similarity=0.047 Sum_probs=77.6
Q ss_pred ceeEEEEEecCHHHHHHHHHhh------c-----ccCCChHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHHHH
Q 042816 6 GFRISVIYSYNNSVLAAAKKLA------R-----FSSVSAPSQNLLVSML---SDTKFVQKFININRERLRRLYVKFVAG 71 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~------~-----~~~~s~~~q~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~l~~~ 71 (163)
|+-+|.+++ .+++.+.+.... . .++.+++.-.++...| .+++. .++.+++-+.++ +.+.+.
T Consensus 290 G~Pi~av~g-~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~~~~-~~~~~~~g~~l~---~~L~~l 364 (453)
T PRK07046 290 GVPCAVYGF-SAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTEAA-YAHMLALAARLA---AGLRAV 364 (453)
T ss_pred CCcceeeee-hHHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHH---HHHHHH
Confidence 677999999 889988886421 1 1345666655555444 34322 233333333333 333344
Q ss_pred hhhcCCccc-cCCceeEEEeecCC-ccc------C-CChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCCh
Q 042816 72 LRQLGIECA-KSNGGFYCWADMSG-LIS------S-YSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTE 142 (163)
Q Consensus 72 l~~~g~~~~-~~~~g~~~~~~~~~-~~~------~-~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~ 142 (163)
++++++... ...|.+ +.+.+.. ... . .+..-...++..+++ +||.+.|. .+.++++.. +++
T Consensus 365 ~~~~~~~~~v~g~G~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gv~~~~~-------~~~~~~~p~-~t~ 434 (453)
T PRK07046 365 IARHGLPWHVTRVGAR-VEFQFAPTPPRNGAEAAAALDPELEAALHLYLLN-RGVLITPF-------HNMMLVCPA-TTA 434 (453)
T ss_pred HHhCCCCeEEEEeCcE-EEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHH-CCCEEecc-------cCcEEEeCC-CCH
Confidence 444543322 223333 3333311 100 0 011123456677776 89999762 135788876 599
Q ss_pred hHHHHHHHHHHHHHHHh
Q 042816 143 KDIHVVMERIRRISQTC 159 (163)
Q Consensus 143 ~~l~~~~~~l~~~~~~~ 159 (163)
++++++++++.+++.++
T Consensus 435 ~did~~~~~~~~~l~~~ 451 (453)
T PRK07046 435 ADVDRLVAAFDACLGEL 451 (453)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998765
No 235
>PRK06234 methionine gamma-lyase; Provisional
Probab=97.37 E-value=0.02 Score=44.73 Aligned_cols=139 Identities=14% Similarity=0.168 Sum_probs=76.4
Q ss_pred CCCCceeE-EEEEecCHHHHHHHHHhh-c-c--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-
Q 042816 2 LSLPGFRI-SVIYSYNNSVLAAAKKLA-R-F--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL- 75 (163)
Q Consensus 2 ~~~~G~Ri-G~~i~~~~~~~~~~~~~~-~-~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 75 (163)
++++|.|+ ||+++ ++++++.++... . . ...+++....+...++.- +..+++ ..++...+.+.|+++
T Consensus 214 l~g~g~~~gG~v~~-~~~~~~~l~~~~~~~~~g~~l~p~~a~l~~~~l~tl---~~r~~~----~~~na~~~a~~L~~~~ 285 (400)
T PRK06234 214 LNGHGDVIAGFVVG-KEEFINQVKLFGIKDMTGSVIGPFEAFLIIRGMKTL---QIRMEK----HCKNAMKVAKFLESHP 285 (400)
T ss_pred ccCCCCceeEEEEe-cHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCcH---HHHHHH----HHHHHHHHHHHHHcCC
Confidence 67888775 99999 888888876542 2 2 345555555555556553 333333 335677777777765
Q ss_pred CC-cccc-----------------CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCC-----------
Q 042816 76 GI-ECAK-----------------SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCH----------- 126 (163)
Q Consensus 76 g~-~~~~-----------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~----------- 126 (163)
.+ .+.- ..||+ +.++++... .....|.+.|-- .++.+.=|....
T Consensus 286 ~V~~V~~p~l~~~~~~~~~~~~~~~~g~l-~s~~l~~~~-----~~~~~f~~~l~~-~~~~~s~G~~~sl~~~p~~~~~~ 358 (400)
T PRK06234 286 AVEKVYYPGLESFEYYELAKKQMSLPGAM-ISFELKGGV-----EEGKVVMNNVKL-ATLAVSLGDAETLIQHPASMTHS 358 (400)
T ss_pred CeeEEECCCCCCCCcHHHHHHhCCCCCce-EEEEecCcH-----HHHHHHHHhCCc-ceEeccCCCCCceecCCccCCCC
Confidence 22 1111 12443 344665321 234566665432 333322221111
Q ss_pred ---C-------CCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 127 ---C-------IEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 127 ---~-------~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
. ..++-+|+|++- |+.+..++-|.+++..
T Consensus 359 ~~~~~~~~~~gi~~~l~R~svGl---E~~~dl~~dl~~al~~ 397 (400)
T PRK06234 359 PYTAEERKEAGISDGLVRLSVGL---EDVDDIIADLKQALDL 397 (400)
T ss_pred CCCHHHHHhcCCCCCeEEEEeCC---CCHHHHHHHHHHHHHH
Confidence 0 125789999997 4566666666666654
No 236
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=97.33 E-value=0.012 Score=46.65 Aligned_cols=132 Identities=10% Similarity=0.056 Sum_probs=75.4
Q ss_pred eeEEEEEecCHHHHHHHHHhh-c---ccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--C
Q 042816 7 FRISVIYSYNNSVLAAAKKLA-R---FSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQLG--I 77 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~~-~---~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g--~ 77 (163)
+-+|.+++ .+++.+.+.... . .++.++++..++.+.|+ +... .++.+++-+.+++ .|.+...++. +
T Consensus 300 ~Pigavv~-~~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l-~~~~~~~G~~l~~---~L~~l~~~~~~~i 374 (442)
T TIGR03372 300 MPIGATIA-TEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEKNL-PAQAAIKGDFLLD---GFQQLAAEYPDLI 374 (442)
T ss_pred ccceEEEe-cHHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH---HHHHHHHhCCCce
Confidence 57899999 889888874321 1 13446666655555543 2221 2222232222222 2222222222 1
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
.-.+ .-|.++-+++... .....+++.|++ +||++.+.. + ..+.+||.... +++++++++++++.++
T Consensus 375 ~~vR-G~Gl~~giel~~~------~~~~~i~~~l~~-~Gvl~~~~~-~---~~~~lr~~Ppl~~t~~~id~~~~~l~~~ 441 (442)
T TIGR03372 375 IEAR-GKGLLMAIEFRDN------EIGYAFAKELFQ-QNILVAGTL-N---NAKSIRIEPPLTITIEQCALVIKAAKDA 441 (442)
T ss_pred EEEe-cceEEEEEEeCCh------HHHHHHHHHHHH-CCcEEeecC-C---CCCEEEEECCcccCHHHHHHHHHHHHHh
Confidence 1122 3466677777542 134678888876 899997531 1 14689988764 5889999999999875
No 237
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=97.32 E-value=0.012 Score=45.81 Aligned_cols=123 Identities=15% Similarity=0.133 Sum_probs=70.2
Q ss_pred CCceeEEEEEecC--------------HHHHHHHHHhhccc--CCChHHHH-HHHHhcC---ChHHHHHHHHHHHHHHHH
Q 042816 4 LPGFRISVIYSYN--------------NSVLAAAKKLARFS--SVSAPSQN-LLVSMLS---DTKFVQKFININRERLRR 63 (163)
Q Consensus 4 ~~G~RiG~~i~~~--------------~~~~~~~~~~~~~~--~~s~~~q~-~~~~~l~---~~~~~~~~~~~~~~~~~~ 63 (163)
++|=|-|.|.+ + +++.+.+.+..-+. +.....+. +.+..|. .+.+ +...+..-+
T Consensus 234 l~GPrggiI~~-~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea~~~~f-----k~Ya~qVv~ 307 (399)
T PF00464_consen 234 LRGPRGGIILT-NKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEALSPEF-----KEYAKQVVK 307 (399)
T ss_dssp G-SSS-EEEEE-S-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHH-----HHHHHHHHH
T ss_pred ccccCceEEEE-cCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcccCHHH-----HHHHHHHHH
Confidence 57889999999 6 88999998776542 22222221 1112222 2222 344455556
Q ss_pred HHHHHHHHhhhcCCcccc-CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEc----CCCCCCCCCCceEEEEEe
Q 042816 64 LYVKFVAGLRQLGIECAK-SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT----PGSSCHCIEPGWFSFSFT 138 (163)
Q Consensus 64 ~~~~l~~~l~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~----pg~~f~~~~~~~iRi~~~ 138 (163)
+.+.|.+.|.+.|+++.. ..-+-.+|+++.... .+..+..+ .+++.||.+. |+. -....+..+||+..
T Consensus 308 NAk~La~~L~~~G~~v~~ggTd~H~vlvd~~~~~-----~~g~~a~~-~Le~~gI~vnkn~iP~d-~~~~~~sGlRlGT~ 380 (399)
T PF00464_consen 308 NAKALAEALQERGFKVVTGGTDNHQVLVDLRSFG-----IDGKEAEK-ALEEAGIIVNKNTIPGD-RSPFVPSGLRLGTP 380 (399)
T ss_dssp HHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGT-----S-HHHHHH-HHHHTTEE-EEE--TTT-STTTT-SEEEEESH
T ss_pred HHHHHHHHHhhCCcEEEECCCCCCeEEEEecccc-----cchHHHHH-HHHhcCeeecccccCCC-CCCCCCCEEEECCH
Confidence 899999999999988863 334446788986521 14455555 4566999985 333 11112578999976
Q ss_pred c
Q 042816 139 L 139 (163)
Q Consensus 139 ~ 139 (163)
.
T Consensus 381 ~ 381 (399)
T PF00464_consen 381 A 381 (399)
T ss_dssp H
T ss_pred H
Confidence 4
No 238
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=97.30 E-value=0.015 Score=46.94 Aligned_cols=138 Identities=10% Similarity=0.033 Sum_probs=76.8
Q ss_pred eeEEEEEecCHHHHHHHHHh-------hc--ccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042816 7 FRISVIYSYNNSVLAAAKKL-------AR--FSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQ 74 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~-------~~--~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (163)
+-+|-+++ ++++.+.+... .. .++.++++-.++.+.|+ +.+. .++.+++-+.+++..+.+ .+
T Consensus 336 ~PigAv~~-~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~~~~l-~~~~~~~g~~l~~~L~~l----~~ 409 (504)
T PLN02760 336 MPIGAVLV-SPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKERNI-PEHVNKIAPRFQDGIKAF----SG 409 (504)
T ss_pred cccceEee-cHHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHH----hc
Confidence 47899899 89998888642 11 23556666665555553 2221 233333333333333322 23
Q ss_pred cCC-ccccCCceeEEEeecCCc-ccCCC----hhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHH
Q 042816 75 LGI-ECAKSNGGFYCWADMSGL-ISSYS----EKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHV 147 (163)
Q Consensus 75 ~g~-~~~~~~~g~~~~~~~~~~-~~~~~----~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~ 147 (163)
+.+ .-.... |.++-+++... ..... ..-...+.+.+++ +||.+.++ .+.+|++... ++++++++
T Consensus 410 ~~~v~~vrG~-Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~-~Gvl~~~~-------g~~lrl~Ppl~it~eeid~ 480 (504)
T PLN02760 410 SPIIGEIRGT-GLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKK-RGMLVRVA-------GDNIMMSPPLIITPEEVDE 480 (504)
T ss_pred CCCeeeEEeC-ceEEEEEEecCCcccccccchhHHHHHHHHHHHh-CCcEEEec-------CCEEEEECCCCCCHHHHHH
Confidence 322 222233 44555555321 00000 0114557777776 89999762 2468888542 38899999
Q ss_pred HHHHHHHHHHHh
Q 042816 148 VMERIRRISQTC 159 (163)
Q Consensus 148 ~~~~l~~~~~~~ 159 (163)
+++++.+++.++
T Consensus 481 ~~~~l~~al~~~ 492 (504)
T PLN02760 481 LISIYGKALKAT 492 (504)
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
No 239
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=97.30 E-value=0.011 Score=44.89 Aligned_cols=137 Identities=15% Similarity=0.102 Sum_probs=77.1
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhccc-----------------CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLARFS-----------------SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYV 66 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~~~-----------------~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 66 (163)
+++-+.|++++.++++.+.+....... .++.+...++... .+.+++..+..+++.+
T Consensus 170 ~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~-------l~~~~~~~~~~~~~~~ 242 (352)
T cd00616 170 LTTGEGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQ-------LEKLDEIIARRREIAE 242 (352)
T ss_pred CcccCceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHHH-------HHhhHHHHHHHHHHHH
Confidence 455678999885578877766543211 1111111111111 1234566667778889
Q ss_pred HHHHHhhhc-CCccccCCc-----eeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC-------------
Q 042816 67 KFVAGLRQL-GIECAKSNG-----GFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC------------- 127 (163)
Q Consensus 67 ~l~~~l~~~-g~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~------------- 127 (163)
++.+.|+++ |+++..+.. ...+.+.++... + .+..++.+.|.+ +||.+........
T Consensus 243 ~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~v~~~L~~-~gI~~~~~~~~~~~~~~~~~~~~~~~ 317 (352)
T cd00616 243 RYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPEA---G-ESRDELIEALKE-AGIETRVHYPPLHHQPPYKKLLGYPP 317 (352)
T ss_pred HHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCcC---C-CCHHHHHHHHHH-CCCCeeeecCccccCHhhhhccCCCc
Confidence 999999887 777664322 223344454300 0 267888888865 8997653211000
Q ss_pred -CC-------CceEEEEEec-CChhHHHHHHHHH
Q 042816 128 -IE-------PGWFSFSFTL-LTEKDIHVVMERI 152 (163)
Q Consensus 128 -~~-------~~~iRi~~~~-~~~~~l~~~~~~l 152 (163)
.. .+.+|+++.. .+.++++..++.|
T Consensus 318 ~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l 351 (352)
T cd00616 318 GDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEAL 351 (352)
T ss_pred CCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHh
Confidence 00 2679998864 3777877766655
No 240
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0084 Score=46.97 Aligned_cols=96 Identities=20% Similarity=0.257 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc-CCccccCC---ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-
Q 042816 54 ININRERLRRLYVKFVAGLRQL-GIECAKSN---GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI- 128 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~- 128 (163)
++.+.++-++..+++.+.|+++ ++++..|. .+-.+.+.++.. ++.+++..|.+ +||.++.|..+..+
T Consensus 298 ~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~-------~~~dv~~~L~~-~gI~vr~g~~ca~p~ 369 (405)
T COG0520 298 MEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGI-------HPHDVATLLDE-KGIAVRAGHHCAQPL 369 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeCCC-------CHHHHHHHHHh-CCeEEEeccccccHH
Confidence 5677788888889999999998 78887764 233344455542 67899988766 88999999776532
Q ss_pred -----CCceEEEEEec-CChhHHHHHHHHHHHHHH
Q 042816 129 -----EPGWFSFSFTL-LTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 129 -----~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~ 157 (163)
-+..+|+|+.. .+.|+++..++.|+++.+
T Consensus 370 ~~~~~~~~~iR~S~~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 370 HRLLGVDATIRASLHLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred HHhcCCCCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence 14559999975 488898888888887653
No 241
>PRK06105 aminotransferase; Provisional
Probab=97.29 E-value=0.015 Score=46.30 Aligned_cols=140 Identities=11% Similarity=0.056 Sum_probs=78.6
Q ss_pred eeEEEEEecCHHHHHHHHHhh---------cccCCChHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042816 7 FRISVIYSYNNSVLAAAKKLA---------RFSSVSAPSQNLLVSML---SDTKFVQKFININRERLRRLYVKFVAGLRQ 74 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~~---------~~~~~s~~~q~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (163)
+-+|.+++ ++++.+.+.... ..++.++++-.++.+.| ++++. .+..+++-+.+++..+.+ ++
T Consensus 294 ~P~~av~~-~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~~l-~~~v~~~g~~l~~~L~~l----~~ 367 (460)
T PRK06105 294 QPLSAVLM-NEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEERDL-VGNAAERGARLQARLRAL----AD 367 (460)
T ss_pred ccceEEEE-cHHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHh----hc
Confidence 57899999 889988876421 12345666665554444 33322 233333444333333322 33
Q ss_pred cC-CccccCCceeEEEeecCCc-ccCCC----hhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHH
Q 042816 75 LG-IECAKSNGGFYCWADMSGL-ISSYS----EKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHV 147 (163)
Q Consensus 75 ~g-~~~~~~~~g~~~~~~~~~~-~~~~~----~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~ 147 (163)
+. +.-.... |+++-+++... ..... ..-...+...+++ +||.+.|. .+.+|++... ++++++++
T Consensus 368 ~~~v~~vrG~-Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~~-~Gvl~~~~-------g~~i~l~Ppl~it~~eid~ 438 (460)
T PRK06105 368 HPLVGEVRGV-GLIAAVELVADKATKTPFEPPGKVGARANAAAHE-HGVISRAM-------GDTLAFCPPLIITAAQVDE 438 (460)
T ss_pred CCCeEEEEec-ceEEEEEEecCcccCCCCCchhHHHHHHHHHHHH-CCeEEEec-------CCEEEEECCCccCHHHHHH
Confidence 32 2222233 44544555321 00000 0113467777765 89999763 1478888653 48899999
Q ss_pred HHHHHHHHHHHhhh
Q 042816 148 VMERIRRISQTCKS 161 (163)
Q Consensus 148 ~~~~l~~~~~~~~~ 161 (163)
+++++.+++.++..
T Consensus 439 ~~~~l~~~l~~~~~ 452 (460)
T PRK06105 439 MVDRFGRALDDVAA 452 (460)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988754
No 242
>PRK08297 L-lysine aminotransferase; Provisional
Probab=97.28 E-value=0.0083 Score=47.57 Aligned_cols=111 Identities=15% Similarity=0.168 Sum_probs=65.3
Q ss_pred cCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-C--ccccCCceeEEEeecCCcccCCChhh
Q 042816 30 SSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQLG-I--ECAKSNGGFYCWADMSGLISSYSEKG 103 (163)
Q Consensus 30 ~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~--~~~~~~~g~~~~~~~~~~~~~~~~~~ 103 (163)
++.++++..++...|+ +.+. .+..+++-+.+.+ .+.+..+++. + ++. +. |.++.++++.. ..
T Consensus 325 ~~gnpl~~aaa~a~L~~l~~~~l-~~~~~~~g~~l~~---~L~~l~~~~~~~~~~vr-g~-G~~~~i~~~~~------~~ 392 (443)
T PRK08297 325 WGGNLVDMVRARRILEVIEEDGL-VENAARQGEYLLA---RLEELAAEFPAVVSNVR-GR-GLMCAFDLPTT------AD 392 (443)
T ss_pred CCccHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHH---HHHHHHHHCCCcceeee-cc-ceEEEEEecCH------HH
Confidence 3456666665555554 2221 2333333333333 3333333332 2 333 34 56677777542 13
Q ss_pred HHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHHHh
Q 042816 104 ELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 104 ~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~ 159 (163)
...+++.|++ +||++.|+. .+.+|++.+. ++++++++++++|.+++.++
T Consensus 393 ~~~~~~~l~~-~Gvl~~~~~------~~~lr~~P~l~~t~~eid~~l~~l~~~l~~~ 442 (443)
T PRK08297 393 RDEVIRRLWE-EGVLVLPCG------ERSIRFRPALTVTTEEIDAAIDALRRALPEV 442 (443)
T ss_pred HHHHHHHHHH-CCEEEecCC------CCeEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence 5678888886 999998742 3568885432 48999999999999998765
No 243
>PRK07481 hypothetical protein; Provisional
Probab=97.27 E-value=0.027 Score=44.77 Aligned_cols=141 Identities=11% Similarity=0.003 Sum_probs=76.6
Q ss_pred eeEEEEEecCHHHHHHHHHhh------c---ccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042816 7 FRISVIYSYNNSVLAAAKKLA------R---FSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQ 74 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~~------~---~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (163)
+-+|.+++ ++++.+.+.... . .++.+++.-.++.+.|+ ++.. .+..+++-+.+.+. +.+..++
T Consensus 289 ~Pi~av~~-~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~~~l-~~~~~~~g~~l~~~---L~~l~~~ 363 (449)
T PRK07481 289 VPLGATMV-NARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVREDL-PANAAKRGAYLLEG---LQPLKER 363 (449)
T ss_pred cCceEEEE-cHHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHH---HHHHhhc
Confidence 47899999 889988875321 1 13456666555555543 3221 22333333333322 2222222
Q ss_pred cCCccccCCceeEEEeecCCc--ccCC---ChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHH
Q 042816 75 LGIECAKSNGGFYCWADMSGL--ISSY---SEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVV 148 (163)
Q Consensus 75 ~g~~~~~~~~g~~~~~~~~~~--~~~~---~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~ 148 (163)
+++....-.-|.++.+++... .+.+ .......+.+.+++ +||++.|. + +.+||+... +++++++++
T Consensus 364 ~~~i~~vrG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~---g----~~i~l~Ppl~it~~eid~~ 435 (449)
T PRK07481 364 FELVGDVRGKGLMLALDLVADKATREPIDPSKGYANAVADVARE-NGVLVRPS---G----TKIILSPPLVIQREDVDRI 435 (449)
T ss_pred CCCeEEEeecceEEEEEecccccccCCCCchhHHHHHHHHHHHh-CCeEEEec---C----CEEEEECCCCCCHHHHHHH
Confidence 332221223355566666321 0000 01123466777766 89999763 1 247887442 488999999
Q ss_pred HHHHHHHHHHhh
Q 042816 149 MERIRRISQTCK 160 (163)
Q Consensus 149 ~~~l~~~~~~~~ 160 (163)
++.+.+++.++.
T Consensus 436 ~~~l~~~l~~~~ 447 (449)
T PRK07481 436 VDALDAGLSAVP 447 (449)
T ss_pred HHHHHHHHHhcc
Confidence 999999997753
No 244
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=97.25 E-value=0.024 Score=43.70 Aligned_cols=143 Identities=10% Similarity=0.091 Sum_probs=86.8
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhcccCCChHHH-HHH------HHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQ-NLL------VSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG 76 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q-~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 76 (163)
++|=|-|.|.+.++++.+.+.+.--+...+.+.+ .++ .++++ ++| .+ -.+..-+|.+.|.+.|.+.|
T Consensus 231 lrGPrGG~Il~~~eel~kkin~aVFPg~qggpl~HviAakaVa~~Eal~-p~f-k~----Ya~qVv~NAkaLAe~l~~~G 304 (413)
T COG0112 231 LRGPRGGIILTNDEELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALE-PEF-KE----YAKQVVKNAKALAEALKERG 304 (413)
T ss_pred CCCCCceEEEeccHHHHHHhhhhcCCccCCChHHHHHHHHHHHHHHHcC-hhH-HH----HHHHHHHHHHHHHHHHHHcC
Confidence 5788999999944689888888665533333332 222 23333 223 33 34445568899999999999
Q ss_pred CccccCCcee-EEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcC-CCCCCC---CCCceEEEEEec-----CChhHHH
Q 042816 77 IECAKSNGGF-YCWADMSGLISSYSEKGELELWDKLLNVAKVNVTP-GSSCHC---IEPGWFSFSFTL-----LTEKDIH 146 (163)
Q Consensus 77 ~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~p-g~~f~~---~~~~~iRi~~~~-----~~~~~l~ 146 (163)
+++...-.-- .+.+|+.... .+..+... ++++.||.+.- +-.|.. -.+..|||.... ..+++++
T Consensus 305 ~~vvsGgTdnHl~lVDl~~~~-----~~Gk~ae~-~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~ 378 (413)
T COG0112 305 FKVVSGGTDNHLVLVDLRSKG-----LTGKKAEA-ALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEME 378 (413)
T ss_pred CeEecCCccceEEEEEcccCC-----CCHHHHHH-HHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHH
Confidence 8887522222 3556776311 13444444 55668999863 333332 126789998754 3556788
Q ss_pred HHHHHHHHHHHH
Q 042816 147 VVMERIRRISQT 158 (163)
Q Consensus 147 ~~~~~l~~~~~~ 158 (163)
+.-+.|.+++..
T Consensus 379 ~Ia~~I~~vl~~ 390 (413)
T COG0112 379 EIADLIADVLDG 390 (413)
T ss_pred HHHHHHHHHHhc
Confidence 887777777754
No 245
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=97.22 E-value=0.024 Score=43.57 Aligned_cols=133 Identities=11% Similarity=0.104 Sum_probs=81.1
Q ss_pred eEEEEEecCHHHHHHHHHh-------h----c---ccCCChHHHHHHHHhcCChHHHHHH--HHHHHHHHHHHHHHHHHH
Q 042816 8 RISVIYSYNNSVLAAAKKL-------A----R---FSSVSAPSQNLLVSMLSDTKFVQKF--ININRERLRRLYVKFVAG 71 (163)
Q Consensus 8 RiG~~i~~~~~~~~~~~~~-------~----~---~~~~s~~~q~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~ 71 (163)
.+|++++ ++++.+.+... . . +.+++.....++.++++-- .+. ++...+++++..+++.+.
T Consensus 199 G~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l---~~~gg~e~i~~~~~~l~~~l~~~ 274 (355)
T cd00611 199 GVTVVIV-RKDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWL---KEQGGVEAMEKRNRQKAQLLYDT 274 (355)
T ss_pred ceEEEEE-CHHHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHH
Confidence 4678888 77776553321 1 0 1234444555555554432 232 678889999999999999
Q ss_pred hhhc-CCc-cc-cC--CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHH
Q 042816 72 LRQL-GIE-CA-KS--NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDI 145 (163)
Q Consensus 72 l~~~-g~~-~~-~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l 145 (163)
|+++ |+. .. .+ ..+..+-+.++.. ....++...+.+ .|+.+.+|.. ..+.+|+|+.. .+.+++
T Consensus 275 l~~~~gl~~~~~~~~~rs~~vvsf~~~~~------~l~~~~~~~~~r-~G~~~~~~~~----~~g~vR~S~~~~nt~edi 343 (355)
T cd00611 275 IDNSNGFYRGPVDKRARSRMNVPFRLGKE------ELEKEFLKEAEA-AGMIGLKGHR----SVGGIRASIYNALSLEGV 343 (355)
T ss_pred HHhCccccccCCCHHHcCceEEEEEcCCh------hhhHHHHHHHHH-CCCcccCCCc----ccCeEEEEccCCCCHHHH
Confidence 9998 852 21 11 2323344455431 023555455555 8998666654 14689999964 478888
Q ss_pred HHHHHHHHHH
Q 042816 146 HVVMERIRRI 155 (163)
Q Consensus 146 ~~~~~~l~~~ 155 (163)
+..++.|+++
T Consensus 344 ~~l~~al~~~ 353 (355)
T cd00611 344 QALADFMKEF 353 (355)
T ss_pred HHHHHHHHHH
Confidence 8888887764
No 246
>PRK07483 hypothetical protein; Provisional
Probab=97.21 E-value=0.031 Score=44.32 Aligned_cols=148 Identities=11% Similarity=0.133 Sum_probs=80.6
Q ss_pred ce-eEEEEEecCHHHHHHHHHhh------cccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 6 GF-RISVIYSYNNSVLAAAKKLA------RFSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 6 G~-RiG~~i~~~~~~~~~~~~~~------~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
|+ -+|.+++ ++++.+.+.... ..++.+++.-.++.+.|+ ++.. .+..+++-+.+++..+ +.++++
T Consensus 274 G~~Pi~av~~-~~~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~~~l-~~~~~~~g~~l~~~L~---~l~~~~ 348 (443)
T PRK07483 274 GYQPIGAVLA-SDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAEDGL-LANVRARGEQLRARLR---ERLGQH 348 (443)
T ss_pred CccccEEEEE-cHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHH---HHHhcC
Confidence 53 7899999 889888775421 123456666655555543 3322 2333444444333333 333333
Q ss_pred C-CccccCCceeEEEeecCCc--ccCC---ChhhHHHHHHHHHHhcCeEEcCCC-CCCCCCCceEEEEEec-CChhHHHH
Q 042816 76 G-IECAKSNGGFYCWADMSGL--ISSY---SEKGELELWDKLLNVAKVNVTPGS-SCHCIEPGWFSFSFTL-LTEKDIHV 147 (163)
Q Consensus 76 g-~~~~~~~~g~~~~~~~~~~--~~~~---~~~~~~~~~~~l~~~~gi~v~pg~-~f~~~~~~~iRi~~~~-~~~~~l~~ 147 (163)
. +.-.+.. |+++-+++... .+.+ ...-...+.+.+++ +||++.|.. .......+.+|+.-.. ++++++++
T Consensus 349 ~~i~~vRG~-Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gll~~~~~~~~~~~~~~~l~~~PpL~it~~eid~ 426 (443)
T PRK07483 349 PHVGDIRGR-GLFVGVELVADRATKAPFDPALKLHARIKREAMA-RGLMVYPMGGTIDGVRGDHVLLAPPFIITAAQIDE 426 (443)
T ss_pred CCeeeEeec-ccEEEEEEeecccccCCCCchhhHHHHHHHHHHH-CCcEEEecCccccCCCCCEEEEECCCCCCHHHHHH
Confidence 2 2222233 44444455221 0000 00123567777776 999998742 1111113678987643 48899999
Q ss_pred HHHHHHHHHHHhh
Q 042816 148 VMERIRRISQTCK 160 (163)
Q Consensus 148 ~~~~l~~~~~~~~ 160 (163)
++++|.+++.+..
T Consensus 427 ~~~~l~~~l~~~~ 439 (443)
T PRK07483 427 IVERLGDAIDAAL 439 (443)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
No 247
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=97.21 E-value=0.013 Score=46.31 Aligned_cols=141 Identities=8% Similarity=0.070 Sum_probs=78.3
Q ss_pred ceeEEEEEecCHHHHHHHHHhhc-c----cCCChHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042816 6 GFRISVIYSYNNSVLAAAKKLAR-F----SSVSAPSQNLLVSML---SDTKFVQKFININRERLRRLYVKFVAGLRQLGI 77 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~~-~----~~~s~~~q~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 77 (163)
|+-+|++++ ++++.+.+..... + ++.+++.-.++.+.| ++++. .+.++++-+.+ .+.+.+.+.+.|+
T Consensus 274 G~p~~av~~-~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~~~~-~~~~~~~g~~l---~~~l~~~~~~~g~ 348 (433)
T PRK00615 274 GLPAAAVVA-HKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQGF-YTQLSTLEQNF---LSPIEEMIRSQGF 348 (433)
T ss_pred Ccceeeeee-cHHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhcccH-HHHHHHHHHHH---HHHHHHHHHHcCC
Confidence 577999999 8999888854322 1 234555555444444 33221 22223333333 2233344444454
Q ss_pred ccccCCceeEEEeecCCc----ccC---CChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGL----ISS---YSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVME 150 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~----~~~---~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~ 150 (163)
.+.....|.++.+++... +.. ........+...|++ +||.+.|... . .. =+|... ++++++..++
T Consensus 349 ~v~~~r~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~-~---~~--~ls~~h-t~~did~~~~ 420 (433)
T PRK00615 349 PVSLVRYGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFS-KGVYLSPSPF-E---AS--FLSSAH-SMENLDYAQN 420 (433)
T ss_pred CeEEEeeceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHH-CCeeecCccc-c---cc--ceecCC-CHHHHHHHHH
Confidence 433222455666666431 100 011124578888887 8999987531 1 11 245554 8899999999
Q ss_pred HHHHHHHHh
Q 042816 151 RIRRISQTC 159 (163)
Q Consensus 151 ~l~~~~~~~ 159 (163)
.+.++++..
T Consensus 421 a~~~~~~~~ 429 (433)
T PRK00615 421 VLIDSLEKV 429 (433)
T ss_pred HHHHHHHHH
Confidence 999988764
No 248
>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]
Probab=97.20 E-value=0.025 Score=42.26 Aligned_cols=127 Identities=9% Similarity=0.052 Sum_probs=80.9
Q ss_pred eeEEEEEecCHHHHHHHHHhhcc----cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcccc
Q 042816 7 FRISVIYSYNNSVLAAAKKLARF----SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIECAK 81 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~~~~----~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~ 81 (163)
--+|-++..|+++++.-+.+... +.-+.+..+++...|.+. .. ..+.-.++...+.+.++.. ++.+..
T Consensus 229 APVGSViVG~k~FI~kA~~~RKalGGGmRQsGvLaaaaLval~~~---~~----~L~~dHk~A~~lAe~~~~~~~i~v~v 301 (384)
T KOG1368|consen 229 APVGSVIVGSKDFIDKARHFRKALGGGMRQSGVLAAAALVALDEN---VP----LLRADHKRAKELAEYINTPEEIRVEV 301 (384)
T ss_pred CCcccEEEccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhcc---hH----HHHHHHHHHHHHHHHhccccceeeec
Confidence 34676666699999887766663 345666666555555553 12 2233334566677777766 355554
Q ss_pred C--CceeEEEeec-CCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHH
Q 042816 82 S--NGGFYCWADM-SGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRR 154 (163)
Q Consensus 82 ~--~~g~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~ 154 (163)
| +.++-. +.+ ... .+...+++.+.+ +||.+.+|..+ .+||.+-. +++++++..+..+.+
T Consensus 302 ~a~etNiv~-~~l~q~~------~~~~~l~~~~~k-~gi~lm~~~s~------r~Rivlh~Qvt~~~ve~~~~~~~k 364 (384)
T KOG1368|consen 302 PAVETNIVN-MVLCQAR------LTAEELCKFLEK-NGILLMGGASR------RIRIVLHHQVTDEDVEYVKSVLSK 364 (384)
T ss_pred chhhcceee-eeccccc------CCHHHHHHHHHH-CCeEEeecccc------ceEEEEEEecCHHHHHHHHHHHHH
Confidence 4 444433 333 222 278999998876 99999987643 47888753 588999999888843
No 249
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=97.19 E-value=0.031 Score=42.46 Aligned_cols=133 Identities=14% Similarity=0.147 Sum_probs=82.4
Q ss_pred ceeEEEEEecCHHHHHHHHHhhcc----cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCccc
Q 042816 6 GFRISVIYSYNNSVLAAAKKLARF----SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIECA 80 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~~~----~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~ 80 (163)
|+-+|-+++.|.++++.+...... +.-+.+.......+|++.-| ...-.+-.+....|.+.|.+. |+++.
T Consensus 203 ~~~~gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~~~~-----~~~~~Han~mA~~La~~~~~~~G~~~~ 277 (342)
T COG2008 203 GAPVGAIVFGNRDFAKRARRWRKRAGGLMRKARFLAAQGLYALEDDVW-----RLAADHANAMAARLAEGLEAKPGVKLA 277 (342)
T ss_pred cceeeeEEEcCHHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHhccHH-----HHHHHHHHHHHHHHHHhhhhcCCceec
Confidence 344666666699999998877663 45566777777788888633 111122223477788899866 98888
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRIS 156 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~ 156 (163)
.|.-...+++++++.. .+...+...+.. .|+.+.++. .-+|+..+. .+++++++.+..+++++
T Consensus 278 ~~~~tN~vf~~l~~~~-----i~~l~~~~~~~~-~~~~~~~~~-------~~vRfvts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 278 FPVETNMVFVRLPESA-----IEALRLAGALFY-RGVLIGAHG-------EIVRFVTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred cCCcccEEEEECChHH-----HHHHHhhchhhe-eeeeccCCC-------ceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence 7644446778888521 122233333322 455554432 357877754 37788888888877653
No 250
>PRK06148 hypothetical protein; Provisional
Probab=97.18 E-value=0.03 Score=48.88 Aligned_cols=145 Identities=8% Similarity=0.024 Sum_probs=82.3
Q ss_pred CceeEEEEEecCHHHHHHHHHhhc---ccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLAR---FSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~---~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
.|+-+|.+++ .+++.+.+..-.. .++.++++-.++.+.|+ +... .+..+++-+.+++..+.+ .+++++-
T Consensus 858 gG~Plgav~~-~~ei~~~~~~g~~~~~Tf~gnpla~aaa~a~L~~i~~e~l-~~~~~~~G~~l~~~L~~l---~~~~~~i 932 (1013)
T PRK06148 858 NGHPMGAVVT-TREIADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIEDEDL-QRNALEIGNYLLAGLREL---QDRFDII 932 (1013)
T ss_pred CCcceEEEEE-cHHHHhhccCCCccccCCCCCHHHHHHHHHHHHHHhhccH-HHHHHHHHHHHHHHHHHH---HHhCCCc
Confidence 3677999999 8999888754221 23456666555554443 3322 233333334433333322 2333321
Q ss_pred cccCCceeEEEeecCCc--ccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGL--ISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
...-.-|+++-+++... ...+.......+.+.+++ +||.+.+... ..+.+||.... +++++++++++++.++
T Consensus 933 ~~VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~-~Gvl~~~~g~----~~~vlr~~Ppl~it~~~id~~l~~l~~~ 1007 (1013)
T PRK06148 933 GDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGARE-RGILIGTEGP----HDNVLKIRPPLIFSRADADHLLEVLDDV 1007 (1013)
T ss_pred eEEeeeceEEEEEecCCccccCccHHHHHHHHHHHHh-CCeEEeccCC----CCCEEEEeCCccCCHHHHHHHHHHHHHH
Confidence 11223355555666421 011111124567777776 8999976421 14778888754 4889999999999999
Q ss_pred HHHh
Q 042816 156 SQTC 159 (163)
Q Consensus 156 ~~~~ 159 (163)
+.++
T Consensus 1008 l~~~ 1011 (1013)
T PRK06148 1008 LAAA 1011 (1013)
T ss_pred HHHH
Confidence 8764
No 251
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=97.16 E-value=0.015 Score=45.42 Aligned_cols=68 Identities=13% Similarity=0.086 Sum_probs=39.2
Q ss_pred CCCCceeEE-EEEecCHHHHH-HHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-C
Q 042816 2 LSLPGFRIS-VIYSYNNSVLA-AAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-G 76 (163)
Q Consensus 2 ~~~~G~RiG-~~i~~~~~~~~-~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g 76 (163)
|+.+|.|+| ++++ +++.++ .+...... ..++++.+..+..-|+.- ....+...++...+.+.|+++ +
T Consensus 213 l~g~g~~~GG~vv~-~~~~i~~~~~~~~~~~g~~~s~~~A~~~l~~L~tl-------~~R~~~~~~na~~la~~L~~~p~ 284 (398)
T PRK07504 213 IDGQGRCLGGVVLS-DKAWIEEHLQDYFRHTGPSLSPFNAWTLLKGLETL-------PVRVRQQTESAAAIADFLAGHPK 284 (398)
T ss_pred ccCCccceEEEEEe-CcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchH-------HHHHHHHHHHHHHHHHHHHcCCC
Confidence 678999996 5555 666654 34443332 344555555554444442 333333346777788888876 4
Q ss_pred C
Q 042816 77 I 77 (163)
Q Consensus 77 ~ 77 (163)
+
T Consensus 285 v 285 (398)
T PRK07504 285 V 285 (398)
T ss_pred c
Confidence 4
No 252
>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]
Probab=97.14 E-value=0.0045 Score=46.89 Aligned_cols=133 Identities=16% Similarity=0.233 Sum_probs=89.2
Q ss_pred CCCCceeEEEE--EecCHHHHHHHHH----hhcc--cCCChHHHHHHHHhcCChHHHH---HHHHHHHHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVI--YSYNNSVLAAAKK----LARF--SSVSAPSQNLLVSMLSDTKFVQ---KFININRERLRRLYVKFVA 70 (163)
Q Consensus 2 ~~~~G~RiG~~--i~~~~~~~~~~~~----~~~~--~~~s~~~q~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~l~~ 70 (163)
.|+-|=|+|-+ ++.+++....+.. ...+ ++++.-...+++.+|++++... ..++-+..++...++.|.+
T Consensus 275 MGLYgERvGa~svvc~~ad~A~rV~SQlk~liRpmYSnPP~hGArIv~~Il~d~~l~~~W~~evk~MadRi~~mR~~L~d 354 (427)
T KOG1411|consen 275 MGLYGERVGALSVVCKDADEAKRVESQLKILIRPMYSNPPLHGARIVATILSDPDLKNQWLGEVKGMADRIISMRQQLFD 354 (427)
T ss_pred cchhhhccceeEEEecCHHHHHHHHHHHHHHhcccccCCCccchhhhhhccCChHHHHHHHHHHHHHHHhhhhhHHHHhH
Confidence 57889999986 4456665555433 3332 4555566788999999975323 3346667777888888888
Q ss_pred HhhhcC----CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHH
Q 042816 71 GLRQLG----IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIH 146 (163)
Q Consensus 71 ~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~ 146 (163)
.|.+.| ++...-+-|+|.+..+. .+.++.|.+++.|+++. + =|||++.++..++.
T Consensus 355 ~L~~~gs~~~W~hI~~QIGMF~fTgl~-----------peQv~~l~ke~~iYmT~------d----GRiS~aG~ss~nV~ 413 (427)
T KOG1411|consen 355 ALEKEGSPGNWSHITKQIGMFCFTGLN-----------PEQVDWLTKEYHIYLTK------D----GRISMAGLSSSNVP 413 (427)
T ss_pred HhhcCCCCccHHHHHHhhheeeecCCC-----------HHHHHHHHhhheeeecc------C----ceEeeccccccCCc
Confidence 888763 44466788999887765 44556677888999863 1 28998876666655
Q ss_pred HHHHHHHHH
Q 042816 147 VVMERIRRI 155 (163)
Q Consensus 147 ~~~~~l~~~ 155 (163)
...+.|-++
T Consensus 414 yLa~aih~v 422 (427)
T KOG1411|consen 414 YLADAIHAV 422 (427)
T ss_pred ccchhhHhH
Confidence 554444443
No 253
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=97.14 E-value=0.016 Score=45.66 Aligned_cols=130 Identities=10% Similarity=0.018 Sum_probs=76.3
Q ss_pred eEEEEEecCHHHHHHHHHhh-------cccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC----
Q 042816 8 RISVIYSYNNSVLAAAKKLA-------RFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG---- 76 (163)
Q Consensus 8 RiG~~i~~~~~~~~~~~~~~-------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g---- 76 (163)
-++-++. ++++.+.+.... ..+..++++..++.+.|+-- ++ +...+..+++-+++.+.|++++
T Consensus 285 p~~a~~~-~~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l---~~--~~~~~~~~~~~~~l~~~L~~l~~~~~ 358 (427)
T TIGR00508 285 TLSATVT-TDKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAIL---LE--GEWQKQVSAIENQLKRELSPLRKNPV 358 (427)
T ss_pred cceEEEE-cHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHH---Hh--CCHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 4666777 888988886531 11234666666555555421 11 1223444455555555555542
Q ss_pred CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 77 IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 77 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
+.-.... |..+-+.+... .+...+.+.|++ +||.+.+. + +.+|++... +++++++++++.+.++
T Consensus 359 i~~vrg~-G~~~~i~~~~~------~~~~~~~~~l~~-~Gv~~~~~---~----~~l~~~ppl~~t~~~id~~~~~l~~~ 423 (427)
T TIGR00508 359 VKDVRVL-GAIGVVEMYKP------VNVEELQKKFVE-QGVWIRPF---G----KLIYVMPPYIITTEQLQKLTAALIEA 423 (427)
T ss_pred EEeEecc-ccEEEEEECCc------cCHHHHHHHHHH-CCeEEEec---C----CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 1111112 44455555421 145678888876 89999753 1 358887752 4889999999999998
Q ss_pred HHH
Q 042816 156 SQT 158 (163)
Q Consensus 156 ~~~ 158 (163)
+.+
T Consensus 424 l~~ 426 (427)
T TIGR00508 424 LHE 426 (427)
T ss_pred Hhc
Confidence 754
No 254
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=97.13 E-value=0.063 Score=41.84 Aligned_cols=66 Identities=17% Similarity=0.043 Sum_probs=49.4
Q ss_pred CCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 3 SLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
|.++++.|++++.++++++.+...... .+.+++.+..+...|+. +....+...++...+.+.|+++
T Consensus 202 G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~l~~rgl~t-------l~~R~~~~~~na~~la~~L~~~ 269 (386)
T PRK08045 202 GHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRT-------LVPRMELAQRNAQAIVKYLQTQ 269 (386)
T ss_pred CCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcc-------HHHHHHHHHHHHHHHHHHHHcC
Confidence 457788999988568888888766554 45788888888888776 3455566667788888888887
No 255
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=97.12 E-value=0.0059 Score=47.12 Aligned_cols=131 Identities=15% Similarity=0.166 Sum_probs=78.0
Q ss_pred EEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-C-Cccc-cCC
Q 042816 9 ISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-G-IECA-KSN 83 (163)
Q Consensus 9 iG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g-~~~~-~~~ 83 (163)
.|++++.++++.+.+...... ...+++....+..-|+. +....+...++...+.+.|+++ + ..+. ++.
T Consensus 207 gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~~L~t-------L~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg~ 279 (364)
T PRK07269 207 AGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLKT-------LSLRMERSTANAQEVVAFLKKSPAVKEVLYTGK 279 (364)
T ss_pred ceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCc-------HHHHHHHHHHHHHHHHHHHHhCCCccEEeCCCc
Confidence 578887567888877755543 34566666666666665 2344444566788888888887 4 3444 777
Q ss_pred ceeEEEeecCCcccCCChhhHHHHHHH---------HHHhcCeEEcCCCCCCC-----------CCCceEEEEEecCChh
Q 042816 84 GGFYCWADMSGLISSYSEKGELELWDK---------LLNVAKVNVTPGSSCHC-----------IEPGWFSFSFTLLTEK 143 (163)
Q Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~~~gi~v~pg~~f~~-----------~~~~~iRi~~~~~~~~ 143 (163)
||++.+.- ... .....|.+. |-....+.+.|++.+.. ..++-+|+|++- |
T Consensus 280 gg~~sf~~-~~~------~~~~~f~~~l~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~r~~~Gi~~~liRlsvGl---E 349 (364)
T PRK07269 280 GGMISFKV-ADE------TRIPHILNSLKVFTFAESLGGVESLITYPTTQTHADIPAEVRHSYGLTDDLLRLSIGI---E 349 (364)
T ss_pred CcEEEEEE-CCH------HHHHHHHHhCCcceEccCCCCcCeEeeCCcccccccCCHHHHHhcCCCCCeEEEEecc---C
Confidence 88766543 211 122333332 22223455667544321 126799999997 5
Q ss_pred HHHHHHHHHHHHH
Q 042816 144 DIHVVMERIRRIS 156 (163)
Q Consensus 144 ~l~~~~~~l~~~~ 156 (163)
+.+..++-|.+++
T Consensus 350 ~~~dli~dl~~al 362 (364)
T PRK07269 350 DARDLIADLKQAL 362 (364)
T ss_pred CHHHHHHHHHHHh
Confidence 5666666666655
No 256
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=97.12 E-value=0.04 Score=42.93 Aligned_cols=66 Identities=11% Similarity=0.098 Sum_probs=39.8
Q ss_pred CCCCceeE-EEEEecCHHHHHHHHHhhccc--CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 2 LSLPGFRI-SVIYSYNNSVLAAAKKLARFS--SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 2 ~~~~G~Ri-G~~i~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
++.+|.++ ||+++ ++++++.+....... .++.+.+..+..-++ .+....+.+.++...+.+.|+++
T Consensus 209 ~~g~g~~~GG~vv~-~~~~~~~~~~~~~~~g~~~~~~~a~~~l~gl~-------tl~~R~~~~~~~a~~la~~L~~~ 277 (390)
T PRK08133 209 LDGQGRVLGGAVVG-SKELMEEVFGFLRTAGPTLSPFNAWVFLKGLE-------TLSLRMEAHSANALALAEWLEAH 277 (390)
T ss_pred ecCCcceEeEEEEc-CHHHHHHHHHHHHHhCCCCCHHHHHHHHcccc-------hHHHHHHHHHHHHHHHHHHHHhC
Confidence 56788998 56666 788877776555432 344444333322222 23444445556888899999887
No 257
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=97.06 E-value=0.021 Score=45.04 Aligned_cols=138 Identities=14% Similarity=0.159 Sum_probs=73.2
Q ss_pred ceeEEEEEecCHHHHHHHHHhhc-----ccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042816 6 GFRISVIYSYNNSVLAAAKKLAR-----FSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQLGI 77 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~~-----~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 77 (163)
|+-+|.+++ ++++.+.+..... .++.+++.-.++.+.|+ +++. .+..+++-+.+++..+ +..+++++
T Consensus 273 G~Pi~av~~-~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~~l-~~~~~~~g~~l~~~L~---~l~~~~~~ 347 (428)
T PRK12389 273 GLPIGAYGG-RKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQEGV-YEKLDRLGAMLEEGIL---EAAEKHGI 347 (428)
T ss_pred CCceeEEeE-HHHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHH---HHHHhCCC
Confidence 567899988 8899888753211 13456666555544443 3322 2333333333333222 22233442
Q ss_pred --ccccCCceeEEEeecCC-ccc-----C-CChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHH
Q 042816 78 --ECAKSNGGFYCWADMSG-LIS-----S-YSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVV 148 (163)
Q Consensus 78 --~~~~~~~g~~~~~~~~~-~~~-----~-~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~ 148 (163)
.+....| ++ -+.+.. ... . ........+.+.+.+ +||.+.|.. .+.+.+++.. ++++++++
T Consensus 348 ~~~v~r~~g-~~-gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~------~~~~~~~l~~-t~e~id~~ 417 (428)
T PRK12389 348 TITINRLKG-AL-TVYFTDEKVTNYDQAERSDGEAFGKFFKLMLN-QGINLAPSK------YEAWFLTTAH-TEEDIEET 417 (428)
T ss_pred CEEEEecCc-EE-EEEEeCCCCCChhhhcccCHHHHHHHHHHHHH-CCcEeecCC------CCCeeecCCC-CHHHHHHH
Confidence 2323333 33 233321 000 0 011124567777776 899998742 1224566554 89999999
Q ss_pred HHHHHHHHHH
Q 042816 149 MERIRRISQT 158 (163)
Q Consensus 149 ~~~l~~~~~~ 158 (163)
++.+.+++.+
T Consensus 418 ~~~l~~~l~~ 427 (428)
T PRK12389 418 LEAVDRAFAQ 427 (428)
T ss_pred HHHHHHHHHh
Confidence 9999998865
No 258
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=97.05 E-value=0.045 Score=43.88 Aligned_cols=103 Identities=12% Similarity=0.065 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCccccCCceeE-EEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCce
Q 042816 54 ININRERLRRLYVKFVAGLRQLGIECAKSNGGFY-CWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGW 132 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~ 132 (163)
+++..+...++.+++.+.|.++ +++..+...+. +.++.+.. ...+ .+..++.+.|.+ +||.+. +..|.....+.
T Consensus 347 l~~~a~~~~~~a~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~-~~~g-~~~~~v~~~L~~-~Gi~~~-~~~~p~~~~~~ 421 (481)
T PRK04366 347 LREVSEDAVLNANYLKARLKDI-YDLPYDRPCMHEFVLSGKKL-KETG-VRTLDIAKRLLD-YGFHPP-TIYFPLIVPEA 421 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhHhh-CcccCCCCeeEEEEEECccc-cccC-CCHHHHHHHHHH-CCccCC-ccccccccCCe
Confidence 4555566677788888888886 22222111111 23333310 0011 157889998887 899865 22332222568
Q ss_pred EEEEEec-CChhHHHHHHHHHHHHHHHhhh
Q 042816 133 FSFSFTL-LTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 133 iRi~~~~-~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
+|+++.. .+.++++..++.|.++.++...
T Consensus 422 l~is~~e~~t~edid~l~~~l~~i~~~~~~ 451 (481)
T PRK04366 422 LMIEPTETESKETLDAFIAAMKQIAEEAKE 451 (481)
T ss_pred EEEcccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999863 3788999999999998877654
No 259
>PRK06149 hypothetical protein; Provisional
Probab=97.02 E-value=0.037 Score=48.13 Aligned_cols=142 Identities=13% Similarity=0.150 Sum_probs=80.5
Q ss_pred ceeEEEEEecCHHHHHHHHHhhcc---cCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-c
Q 042816 6 GFRISVIYSYNNSVLAAAKKLARF---SSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQLGI-E 78 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~~~---~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~-~ 78 (163)
|+-+|.+++ .+++.+.+.....+ ++.|+++-.++.+.|+ +... .+..+++-+.++++.+ +..+++++ .
T Consensus 819 G~Pl~av~~-~~~i~~~~~~~~~~~sT~~gnP~~~aaala~L~~i~~e~l-~~~~~~~G~~l~~~L~---~l~~~~~~i~ 893 (972)
T PRK06149 819 GHPLGAVIT-RREIAEALEAEGYFFSSTGGSPVSCRIGMAVLDVLREEKL-QENARRVGDHLKARLE---ALADRHPLIG 893 (972)
T ss_pred CeeeEEEEE-cHHHHhhhccCCcccCCCCCCHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHH---HHHHhCCCeE
Confidence 577899999 89998887642221 3456666665555553 2221 2233333333333333 22233332 2
Q ss_pred cccCCceeEEEeecCCcc--cCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLI--SSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVMERIRRI 155 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~~~l~~~ 155 (163)
... .-|+++-+++...- ..+.......+++.+++ +||.+.|. + ...+.+||.-. .+++++++++++++.++
T Consensus 894 ~vr-G~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~-~Gvl~~~~---g-~~~~vl~~~Ppl~it~~~id~~~~~l~~~ 967 (972)
T PRK06149 894 AVH-GMGLYLGVELVRDRQTLEPATEETAAICDRLLE-LGVIMQPT---G-DHLNILKIKPPLCLDRESADFFVDMLDRV 967 (972)
T ss_pred EEe-ecceEEEEEEecCcccCCCChHHHHHHHHHHHh-CCeEEeec---C-CCCCEEEEECCCcCCHHHHHHHHHHHHHH
Confidence 233 33555556653210 00111234578888876 89999874 1 11467888765 24889999999999998
Q ss_pred HHH
Q 042816 156 SQT 158 (163)
Q Consensus 156 ~~~ 158 (163)
+.+
T Consensus 968 l~~ 970 (972)
T PRK06149 968 LTE 970 (972)
T ss_pred HHh
Confidence 864
No 260
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=97.02 E-value=0.046 Score=43.65 Aligned_cols=144 Identities=11% Similarity=0.020 Sum_probs=77.4
Q ss_pred CceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQLGIEC 79 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 79 (163)
.|+-+|.+++ .+++ +.+..... .++.++++-.++.+.|+ +.+. .++.+++-+.+.+..+ +..+++++-.
T Consensus 304 gG~PlsAv~~-~~~~-~~~~~~~~~~T~~gnpla~Aaa~a~L~~l~~~~l-~~~~~~~G~~l~~~L~---~l~~~~~~i~ 377 (464)
T PRK06938 304 GSLPLAVVVY-REWL-DTWQPGAHAGTFRGNQMAMAAGSATLRYIKEHRL-AEHAAAMGERLREHLR---QLQRDYPQLG 377 (464)
T ss_pred CCCceEEEee-hhHh-hccCCCCCCCCCCcCHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHH---HHHHhCCCee
Confidence 3677899998 6664 44421111 24567777665555554 3221 2333333333333332 3223343222
Q ss_pred ccCCceeEEEeecCCcccC-------C-ChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISS-------Y-SEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVME 150 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~-------~-~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~~ 150 (163)
....-|+++-+++...-.. + ...-...+.+.+++ +||.+.++..+ .+.+|+... .+++++++++++
T Consensus 378 ~VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gll~~~~g~~----~~~l~~~Ppl~it~~eid~~~~ 452 (464)
T PRK06938 378 DVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLR-RGLILELGGRH----GSVVRFLPPLIITAEQIDEVAE 452 (464)
T ss_pred eeeccceEEEEEeccCcccccccccCCccHHHHHHHHHHHHH-CCeEEeecCCC----CCEEEEECCCccCHHHHHHHHH
Confidence 2223355566666321000 0 01123567777776 99999874222 357888743 358899999999
Q ss_pred HHHHHHHHh
Q 042816 151 RIRRISQTC 159 (163)
Q Consensus 151 ~l~~~~~~~ 159 (163)
++.+++.+.
T Consensus 453 ~l~~~l~~~ 461 (464)
T PRK06938 453 IFAEAVAAA 461 (464)
T ss_pred HHHHHHHHH
Confidence 999998764
No 261
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=97.02 E-value=0.052 Score=42.56 Aligned_cols=66 Identities=15% Similarity=0.138 Sum_probs=41.1
Q ss_pred CCCCceeE-EEEEecCHHHHH-HHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 2 LSLPGFRI-SVIYSYNNSVLA-AAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 2 ~~~~G~Ri-G~~i~~~~~~~~-~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
++..|.++ |++++ +++.+. .++..... ..++++.+.++...|+.- +..++ ...++...+.+.|+++
T Consensus 218 l~g~g~~~gG~v~~-~~~~~~~~l~~~~~~~g~~~s~~~a~l~l~~L~tl---~~R~~----~~~~~a~~~a~~L~~~ 287 (403)
T PRK07810 218 IDGQGRVLGGAILG-DREYIDGPVQKLMRHTGPALSAFNAWVLLKGLETL---ALRVR----HSNASALRIAEFLEGH 287 (403)
T ss_pred ecCCcCceeEEEEe-ChHHHHHHHHHHHHHhCCCCCHHHHHHHHhccCcH---HHHHH----HHHHHHHHHHHHHhcC
Confidence 46678887 88888 666554 45544333 357777777777766653 33333 3344566667778776
No 262
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=97.00 E-value=0.035 Score=43.38 Aligned_cols=133 Identities=13% Similarity=0.095 Sum_probs=72.8
Q ss_pred ceeEEEEEecCHHHHHHHHHhh--cccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh----cCCcc
Q 042816 6 GFRISVIYSYNNSVLAAAKKLA--RFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ----LGIEC 79 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~g~~~ 79 (163)
|+-+|.+++ ++++.. +.... ..++.+++...++...|+.- ++ +...+..+++-+++.+.|++ .++..
T Consensus 253 G~p~~av~~-~~~i~~-~~~~~~~~T~~g~pl~~aaala~L~~l---~~--~~l~~~~~~~g~~l~~~L~~l~~~~~i~~ 325 (395)
T PRK03715 253 GVPLAALLA-KAEVAV-FEAGDQGGTYNGNPLMTAVGVAVISQL---LA--PGFLEGVRARGEYLKEKLLELSEERGLEG 325 (395)
T ss_pred CcceEEEEE-cccccc-ccCCCcCCCCCCCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHHHhhcCCcCe
Confidence 577899988 777742 21111 11344555555444444321 10 12333444444444444443 34443
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHH--hcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLN--VAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRIS 156 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~ 156 (163)
.+.. |..+-+++... ....+.+.+.+ ++||.+.+.. ++.+|++... +++++++++++.|.+++
T Consensus 326 vrG~-Glm~~i~l~~~-------~~~~~~~~~~~~~~~Gi~~~~~~------~~~lR~~p~l~~t~~ei~~~~~~l~~~l 391 (395)
T PRK03715 326 ERGE-GLLRALLLGKD-------IGPQIVEKARDMQPDGLLLNAPR------PNLLRFMPALNVTTEEIDQMIAMLRSVL 391 (395)
T ss_pred EEcc-eeEEEEEecCc-------hHHHHHHHHHhccCCCEEEeecC------CCEEEEeCCcccCHHHHHHHHHHHHHHH
Confidence 3333 45555666531 12333333332 1399986431 3679999864 58899999999999998
Q ss_pred HHh
Q 042816 157 QTC 159 (163)
Q Consensus 157 ~~~ 159 (163)
.++
T Consensus 392 ~~~ 394 (395)
T PRK03715 392 DKL 394 (395)
T ss_pred Hhh
Confidence 764
No 263
>PRK07482 hypothetical protein; Provisional
Probab=96.96 E-value=0.061 Score=42.94 Aligned_cols=141 Identities=9% Similarity=-0.002 Sum_probs=77.3
Q ss_pred eEEEEEecCHHHHHHHHHh----h---c--ccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 8 RISVIYSYNNSVLAAAKKL----A---R--FSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 8 RiG~~i~~~~~~~~~~~~~----~---~--~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
-+|-+++ .+++.+.+... . . .++.++++-.++.+.|+ ++.. .++.+++-+.+. +.+.+.++++
T Consensus 297 Pi~av~~-~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~~~l-~~~~~~~g~~l~---~~L~~l~~~~ 371 (461)
T PRK07482 297 PLSGSIV-GEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILERENL-VGNAAEVGAYFR---ARLRAAFGDH 371 (461)
T ss_pred ccceeee-cHHHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHH---HHHHHHHhcC
Confidence 6788888 78888777531 1 1 23567777665555553 3221 222233333322 3333333344
Q ss_pred CCccccCCceeEEEeecCCcc--cCC-Ch--hhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHH
Q 042816 76 GIECAKSNGGFYCWADMSGLI--SSY-SE--KGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVM 149 (163)
Q Consensus 76 g~~~~~~~~g~~~~~~~~~~~--~~~-~~--~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~ 149 (163)
.+-.....-|.++-+++...- +.+ .. .-...++..+++ +||.+.++. ..+.+|+..+ .++++++++++
T Consensus 372 ~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~-~Gvl~~~~~-----~~~~i~~~Ppl~it~~ei~~~~ 445 (461)
T PRK07482 372 PLVGEVRGVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAALE-RGVIARAMP-----HGDILGFAPPLVLTRAEADEIV 445 (461)
T ss_pred CCEEEEeeceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHHH-CCcEEecCC-----CCCEEEEeCCCCCCHHHHHHHH
Confidence 322222234555566664211 000 00 013567777776 899986532 1356888743 24999999999
Q ss_pred HHHHHHHHHh
Q 042816 150 ERIRRISQTC 159 (163)
Q Consensus 150 ~~l~~~~~~~ 159 (163)
+++.+++.++
T Consensus 446 ~~l~~~l~~~ 455 (461)
T PRK07482 446 AIAKDAVDEV 455 (461)
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 264
>PRK06062 hypothetical protein; Provisional
Probab=96.95 E-value=0.047 Score=43.44 Aligned_cols=140 Identities=6% Similarity=-0.091 Sum_probs=75.8
Q ss_pred eeEEEEEecCHHHHHHHHHhh--c--ccCCChHHHHHHHHhcC---ChHHHHHHHHHHH-HHHHHHHHHHHHHhhhcCC-
Q 042816 7 FRISVIYSYNNSVLAAAKKLA--R--FSSVSAPSQNLLVSMLS---DTKFVQKFININR-ERLRRLYVKFVAGLRQLGI- 77 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~~--~--~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~g~- 77 (163)
+-+|-+++ .+++.+.+.... . .++.++++-.++.+.|+ +... .++.+++- +.+++..+ +..+++..
T Consensus 290 ~Pigav~~-~~~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l-~~~~~~~G~~~l~~~L~---~l~~~~~~v 364 (451)
T PRK06062 290 VPLGGVAI-SEAIAATFADRPYPGGLTYSGHPLACAAAVATINAMEEEGI-VENAARIGAEVLGPGLR---ELAERHPSV 364 (451)
T ss_pred cCcEEEEE-cHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHH---HHHhcCCcE
Confidence 47888899 889988875321 1 23456666555555543 2221 22222222 22222222 22222222
Q ss_pred ccccCCceeEEEeecCCc-c-cCC--C----hhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGL-I-SSY--S----EKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVV 148 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~-~-~~~--~----~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~ 148 (163)
.-.... |+++-+++... . +.+ . ......+++.|++ +||++.+. .+.+|++... +++++++++
T Consensus 365 ~~vrG~-Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gvl~~~~-------~~~lrl~ppl~~t~~eid~~ 435 (451)
T PRK06062 365 GEVRGL-GVFWALELVADRETREPLAPYGASSAAMAAVKAACKE-RGLLPFVN-------GNRIHVVPPCTVTEDEVREG 435 (451)
T ss_pred EeEecc-ccEEEEEEcccccccCCCcccchhhHHHHHHHHHHHH-CCcEEeec-------CCEEEEECCccCCHHHHHHH
Confidence 122233 44444555321 0 000 0 0124577777776 89998652 2468887743 589999999
Q ss_pred HHHHHHHHHHhh
Q 042816 149 MERIRRISQTCK 160 (163)
Q Consensus 149 ~~~l~~~~~~~~ 160 (163)
++++.+++.++.
T Consensus 436 ~~~l~~~l~~~~ 447 (451)
T PRK06062 436 LAILDAALAVAD 447 (451)
T ss_pred HHHHHHHHHHhh
Confidence 999999998765
No 265
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=96.91 E-value=0.099 Score=41.52 Aligned_cols=137 Identities=12% Similarity=0.086 Sum_probs=76.5
Q ss_pred eeEEEEEecCHHHHHHHHHhh-------c--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-C
Q 042816 7 FRISVIYSYNNSVLAAAKKLA-------R--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-G 76 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~~-------~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g 76 (163)
+-+|-+++ ++++.+.+.... . .++.+++.-.++.+.|+-- .+ +...+..+++-+++.+.|++. .
T Consensus 291 ~P~gav~~-~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l---~~--~~l~~~~~~~g~~l~~~l~~l~~ 364 (442)
T PRK13360 291 IPMGAVFV-SSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLY---ER--EGLLTRAARLAPYWEDALHSLRD 364 (442)
T ss_pred cceEEEEE-cHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHH---Hh--CCHHHHHHHHHHHHHHHHHHhhc
Confidence 67889888 889888775321 1 1345666655555544321 11 123334444445555555443 1
Q ss_pred ---CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHH
Q 042816 77 ---IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERI 152 (163)
Q Consensus 77 ---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l 152 (163)
+.-.... |++.-+.+........ ....+++..+++ +||.+.++ .+.+||+... ++++++++++++|
T Consensus 365 ~~~v~~vrG~-Gl~~~~~l~~~~~~~~-~~~~~~~~~l~~-~Gvl~~~~-------~~~lr~~Ppl~~t~~eid~~~~~l 434 (442)
T PRK13360 365 APHVIDIRNL-GLVGAVELAPRDGKPG-KRAYEVFLKCFE-KGLMIRYT-------GDILALSPPLIIEEAQIDELFDIL 434 (442)
T ss_pred CCCeeeeecc-ceEEEEEEecCCCCcc-hhHHHHHHHHHH-CCcEEEec-------CCEEEEeCCCccCHHHHHHHHHHH
Confidence 1112222 3333344422111111 134677777776 89999753 2468998542 4889999999999
Q ss_pred HHHHHHh
Q 042816 153 RRISQTC 159 (163)
Q Consensus 153 ~~~~~~~ 159 (163)
.++++++
T Consensus 435 ~~~l~~~ 441 (442)
T PRK13360 435 AQALKET 441 (442)
T ss_pred HHHHHHh
Confidence 9998764
No 266
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=96.89 E-value=0.11 Score=40.43 Aligned_cols=66 Identities=12% Similarity=-0.017 Sum_probs=43.9
Q ss_pred CCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 3 SLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
|.++++.|++++.++++++.+...... .+++++.+..+..-++. ...+ .+...++...+.+.|+.+
T Consensus 201 G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a~l~lr~l~t------l~~R-~~~~~~na~~~a~~L~~~ 268 (382)
T TIGR02080 201 GHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLRGLRT------LVAR-MRLQQRNAQAIVEYLQTQ 268 (382)
T ss_pred CCCCceeEEEEeCCHHHHHHHHHHHHccCCCCCHHHHHHHHcccch------HHHH-HHHHHHHHHHHHHHHHhC
Confidence 457899999988678888888777665 34566655555443332 2222 445557788888888876
No 267
>PRK07480 putative aminotransferase; Validated
Probab=96.89 E-value=0.046 Score=43.56 Aligned_cols=140 Identities=10% Similarity=0.021 Sum_probs=77.9
Q ss_pred eeEEEEEecCHHHHHHHHH-hh-----cccCCChHHHHHHHHhcC---ChHHHHHHH-HHHHHHHHHHHHHHHHHhhhcC
Q 042816 7 FRISVIYSYNNSVLAAAKK-LA-----RFSSVSAPSQNLLVSMLS---DTKFVQKFI-NINRERLRRLYVKFVAGLRQLG 76 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~-~~-----~~~~~s~~~q~~~~~~l~---~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~g 76 (163)
+-+|-+++ ++++.+.+.. .. ..++.++++-.++.+.|+ ++.. .++. +++-+.+.+..+ + +.+++
T Consensus 295 ~Pi~av~~-~~~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l-~~~~~~~~g~~l~~~l~---~-l~~~~ 368 (456)
T PRK07480 295 IPMGAVGV-GDRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRDEGI-VERVRDDTGPYLQKRLR---E-LADHP 368 (456)
T ss_pred ccceEEEE-cHHHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHH---H-hhcCC
Confidence 36899999 8898887732 11 124567777666665554 2221 2223 233333333332 2 33343
Q ss_pred -CccccCCceeEEEeecCCccc-CCCh----hhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHH
Q 042816 77 -IECAKSNGGFYCWADMSGLIS-SYSE----KGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVM 149 (163)
Q Consensus 77 -~~~~~~~~g~~~~~~~~~~~~-~~~~----~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~ 149 (163)
+.-.... |+++-+++.+.-. .... .....+...+++ +||.+.+. .+.+|++... ++++++++++
T Consensus 369 ~i~~vrG~-Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gll~~~~-------~~~l~~~Ppl~it~~eid~~~ 439 (456)
T PRK07480 369 LVGEVRGV-GLVGAIELVKDKATRERFEAGGGVGTICRDHCFA-NGLIMRAV-------GDRMIISPPLVITHAEIDELV 439 (456)
T ss_pred CeeeEEee-cceEEEEEeccccccccCcchhhHHHHHHHHHHH-CCcEEeec-------CCEEEEECCCCCCHHHHHHHH
Confidence 2222333 4555556532100 0000 012456666665 89999752 1468888654 4889999999
Q ss_pred HHHHHHHHHhhh
Q 042816 150 ERIRRISQTCKS 161 (163)
Q Consensus 150 ~~l~~~~~~~~~ 161 (163)
++|.+++.++++
T Consensus 440 ~~l~~al~~~~~ 451 (456)
T PRK07480 440 EKARKALDATAA 451 (456)
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 268
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=96.89 E-value=0.048 Score=43.02 Aligned_cols=129 Identities=12% Similarity=0.056 Sum_probs=75.5
Q ss_pred eeEEEEEecCHHHHHHHHHh--------hcccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhh-
Q 042816 7 FRISVIYSYNNSVLAAAKKL--------ARFSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQ- 74 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~--------~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~- 74 (163)
+-+|.+++ ++++.+.+... ...++.+++.-.++.+.|+ +... .++..++ -+++.+.|+.
T Consensus 277 ~p~~av~~-~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~~~-~~~~~~~-------g~~l~~~L~~l 347 (422)
T PRK05630 277 MSFAATLC-TDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGMW-RKQVKRI-------EAELIAGLSPL 347 (422)
T ss_pred cccceeec-cHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhCcH-HHHHHHH-------HHHHHHHHHHh
Confidence 57899999 89998887532 1123455656555554443 3222 2233333 3333333332
Q ss_pred --c-CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHH
Q 042816 75 --L-GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVME 150 (163)
Q Consensus 75 --~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~ 150 (163)
+ .+.-.+.. |.++-+++... .+...+.+.+++ +||++.+. .+.+|+.... +++++++++++
T Consensus 348 ~~~~~v~~vRg~-Gl~~~ie~~~~------~~~~~~~~~~~~-~Gl~~~~~-------g~~l~~~PpL~it~~~i~~~~~ 412 (422)
T PRK05630 348 AHLPGVADVRVL-GAIGVVEMEQP------VDMEEATQAAVD-HGVWLRPF-------GRLVYVMPPYITTSEQIAQICA 412 (422)
T ss_pred hcCCCeeeeecc-ccEEEEEECCc------ccHHHHHHHHHH-CCeEEEec-------CCEEEEECCccCCHHHHHHHHH
Confidence 2 22222222 55555666431 134577777776 89999762 1578887753 48899999999
Q ss_pred HHHHHHHHh
Q 042816 151 RIRRISQTC 159 (163)
Q Consensus 151 ~l~~~~~~~ 159 (163)
++.+++...
T Consensus 413 ~l~~al~~~ 421 (422)
T PRK05630 413 ALAAAVKAK 421 (422)
T ss_pred HHHHHHhcc
Confidence 999988653
No 269
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=96.85 E-value=0.11 Score=41.40 Aligned_cols=137 Identities=12% Similarity=0.075 Sum_probs=77.1
Q ss_pred eeEEEEEecCHHHHHHHHHh-------hc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-C
Q 042816 7 FRISVIYSYNNSVLAAAKKL-------AR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-G 76 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~-------~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g 76 (163)
+-+|.+++ ++++.+.+..- .. .++.+++.-.++.+.|+.- .+ +...+..++.-+++.+.|+++ +
T Consensus 294 ~Pi~av~~-~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i---~~--~~l~~~~~~~g~~l~~~l~~l~~ 367 (445)
T PRK09221 294 IPMGAVIA-SDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIY---RE--EDLFERAAELAPYFEDAVHSLKG 367 (445)
T ss_pred ccceeeEE-cHHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHhhcc
Confidence 56899888 88888877531 11 1345555554444444321 11 123344445555555555543 2
Q ss_pred ---CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHH
Q 042816 77 ---IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERI 152 (163)
Q Consensus 77 ---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l 152 (163)
+.-.+.. |+.+-+++........ .....+.+.+++ +||.+.++ .+.+|++... ++++++++++++|
T Consensus 368 ~~~v~~vrg~-Gl~~~v~~~~~~~~~~-~~~~~~~~~~~~-~Gv~~~~~-------~~~lr~~Ppl~~t~~eid~~~~~l 437 (445)
T PRK09221 368 LPHVIDIRNI-GLVAGIELAPRPGAPG-ARGYEAFMKCFE-KGLLVRYT-------GDTIALSPPLIIEKAQIDELVDAL 437 (445)
T ss_pred CCCEEEEecC-ceEEEEEEeccccccc-chHHHHHHHHHH-CCeEEeec-------CCEEEEECCccCCHHHHHHHHHHH
Confidence 1112223 3444455532110001 134577887776 89999753 2579998543 4889999999999
Q ss_pred HHHHHHh
Q 042816 153 RRISQTC 159 (163)
Q Consensus 153 ~~~~~~~ 159 (163)
.+++.++
T Consensus 438 ~~~l~~~ 444 (445)
T PRK09221 438 GDALRAV 444 (445)
T ss_pred HHHHHhh
Confidence 9998764
No 270
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=96.85 E-value=0.14 Score=39.78 Aligned_cols=66 Identities=14% Similarity=0.152 Sum_probs=40.5
Q ss_pred CCCCceeE-EEEEecCHHHHHHHHHhhccc--CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 2 LSLPGFRI-SVIYSYNNSVLAAAKKLARFS--SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 2 ~~~~G~Ri-G~~i~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
++.+|.++ |++++ ++++++.+....... +.+++...++..-++. +....+...++...+.+.|+++
T Consensus 202 l~g~g~~~gG~vv~-~~~~~~~l~~~~~~~g~~~~p~~a~~~l~~l~t-------l~~r~~~~~~~a~~la~~L~~~ 270 (380)
T TIGR01325 202 IDGQGRVMGGVIAG-SEELMAEVAVYLRHTGPAMSPFNAWVLLKGLET-------LSLRMQKQFDSALAIAEWLQAQ 270 (380)
T ss_pred ecCCCCeEEEEEEe-CHHHHHHHHHHHHhhCCCCCHHHHHHHHhccCc-------HHHHHHHHHHHHHHHHHHHHcC
Confidence 46677787 77887 888888887765533 2343433333222222 3334555666777888888887
No 271
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=96.83 E-value=0.066 Score=42.73 Aligned_cols=144 Identities=8% Similarity=0.009 Sum_probs=77.1
Q ss_pred ceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 6 GFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
|+-+|.+++ .+++ +.+..... .++.++++..++.+.|+ +... .++.+++-+.+++..+ +..+++++-..
T Consensus 299 G~Pi~av~~-~~~~-~~~~~~~~~~T~~gnpla~aaala~L~~l~~~~l-~~~~~~~G~~l~~~L~---~l~~~~~~i~~ 372 (459)
T PRK06931 299 GLPLAVLGI-KKEF-DAWQPGGHTGTFRGNQLAMATGLTTLKILKEENL-AQNAAERGEWLKAQLA---ELQKRYPCIGN 372 (459)
T ss_pred Ccceeeeee-HHHH-hhccCCCCCCCCCCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHH---HHHHhCCCeEe
Confidence 567887777 5553 55432111 24567777665555553 3222 2333444444333333 33333432122
Q ss_pred cCCceeEEEeecCCc--cc-----CC-ChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGL--IS-----SY-SEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMER 151 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~--~~-----~~-~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~ 151 (163)
.-.-|.++-+++... .. .+ ...-...+...+++ +||.+.|+..+ .+.+|+..+. ++++++++++++
T Consensus 373 vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~~~~----~~~l~~~Ppl~it~~eid~~~~~ 447 (459)
T PRK06931 373 VRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACFE-NGLLLERGGRN----GNVVRLLPPLLITQAECEEFIDR 447 (459)
T ss_pred EecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHHH-CCcEEeecCCC----CCEEEEECCCCcCHHHHHHHHHH
Confidence 223355555565321 00 00 01123456677776 89999874221 3678877754 488999999999
Q ss_pred HHHHHHHhh
Q 042816 152 IRRISQTCK 160 (163)
Q Consensus 152 l~~~~~~~~ 160 (163)
+.+++.+.-
T Consensus 448 l~~~l~~~~ 456 (459)
T PRK06931 448 FEQALLAAV 456 (459)
T ss_pred HHHHHHHHH
Confidence 999987643
No 272
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=96.78 E-value=0.14 Score=40.03 Aligned_cols=66 Identities=9% Similarity=0.120 Sum_probs=42.6
Q ss_pred CCCCceeE-EEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 2 LSLPGFRI-SVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 2 ~~~~G~Ri-G~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
+|.+|.++ ||++. ++++++.+...... .+.+++.+..+..-++.- ....+...++...+.+.|+++
T Consensus 212 l~g~~~~~gG~vv~-~~~l~~~l~~~~~~~g~~~s~~~a~l~l~~l~tL-------~~R~~~~~~na~~la~~L~~~ 280 (398)
T PRK08249 212 LSGHADALGGVVCG-SKELMEQVYHYREINGATMDPMSAYLILRGMKTL-------KLRVRQQQESAMALAKYLQTH 280 (398)
T ss_pred cCCCCCceEEEEEC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcchH-------HHHHHHHHHHHHHHHHHHHcC
Confidence 45566666 66666 88999988877664 345666666555554432 233344456777888888876
No 273
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=96.78 E-value=0.033 Score=43.50 Aligned_cols=87 Identities=11% Similarity=0.029 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc-----CCccccCC-----ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCC
Q 042816 54 ININRERLRRLYVKFVAGLRQL-----GIECAKSN-----GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGS 123 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~-----g~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~ 123 (163)
+++.+++..+..+++.+.|++. |+++..|. +++ +.+.++ . +..++.+.|.+ +||.+...
T Consensus 307 ~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~-v~~~~~--~------~~~~~~~~L~~-~gi~v~~~- 375 (406)
T TIGR01814 307 MEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQ-LSLTHP--V------PGKAVFQALIK-RGVIGDKR- 375 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCe-EEEEec--C------CHHHHHHHHHH-CCEEEecc-
Confidence 3566677777777787777664 35554432 233 344555 1 45788888865 79987531
Q ss_pred CCCCCCCceEEEEEe--cCChhHHHHHHHHHHHHH
Q 042816 124 SCHCIEPGWFSFSFT--LLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 124 ~f~~~~~~~iRi~~~--~~~~~~l~~~~~~l~~~~ 156 (163)
.++.+|+|++ ..+.++++.+++.|.+++
T Consensus 376 -----~~~~iRiS~~~~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 376 -----EPSVIRVAPVPLYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred -----CCCeEEEechhccCCHHHHHHHHHHHHHHh
Confidence 2469999984 458899999999888754
No 274
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=96.76 E-value=0.084 Score=41.76 Aligned_cols=131 Identities=7% Similarity=0.059 Sum_probs=76.9
Q ss_pred eEEEEEecCHHHHHHHHHhh-----c--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcc
Q 042816 8 RISVIYSYNNSVLAAAKKLA-----R--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIEC 79 (163)
Q Consensus 8 RiG~~i~~~~~~~~~~~~~~-----~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~ 79 (163)
-+|-+++ ++++.+.+.... . .+..+++.-.++.+.|+-- ++ +...+...++-+++.+.|++. +...
T Consensus 284 p~~a~~~-~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i---~~--~~~~~~~~~~g~~l~~~L~~~~~~~~ 357 (429)
T PRK06173 284 TLSATIT-TEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLL---LE--SPWQQNIQRIEAQLKQELAPAAEFDS 357 (429)
T ss_pred ccceEEe-cHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHH---Hh--CCHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 4667777 788888775311 1 1234555555554444321 11 122444455555555555543 2221
Q ss_pred c---cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 80 A---KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 80 ~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
. +. -|+.+-+.+.... +...+++.|.+ +||.+.+. .+.+|+.... ++++++++++++|.++
T Consensus 358 v~~vRg-~Gl~~~iel~~~~------~~~~i~~~l~e-~Gi~v~~~-------g~~l~~~Ppl~it~~ei~~~~~~l~~~ 422 (429)
T PRK06173 358 VAEVRV-LGAIGVVEMKEPV------NMATLQPRFVE-HGIWVRPF-------GKLVYIMPPFIISPDELSQLTSGLLRV 422 (429)
T ss_pred eeeeec-cceEEEEEeCCcc------cHHHHHHHHHH-CCeEEEec-------CCEEEEeCCccCCHHHHHHHHHHHHHH
Confidence 1 12 3555556664321 35678887876 89999763 1478888754 4889999999999999
Q ss_pred HHHh
Q 042816 156 SQTC 159 (163)
Q Consensus 156 ~~~~ 159 (163)
+.+.
T Consensus 423 l~~~ 426 (429)
T PRK06173 423 LKQE 426 (429)
T ss_pred HHHH
Confidence 8764
No 275
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=96.72 E-value=0.11 Score=41.40 Aligned_cols=138 Identities=13% Similarity=0.094 Sum_probs=76.8
Q ss_pred c-eeEEEEEecCHHHHHHHHHhh------c--ccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042816 6 G-FRISVIYSYNNSVLAAAKKLA------R--FSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLR 73 (163)
Q Consensus 6 G-~RiG~~i~~~~~~~~~~~~~~------~--~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 73 (163)
| +-+|.+++ .+++.+.+..-. . .++.+++.-.++.+.|+ +.+. -+..+++-+.+.+..+.+ .
T Consensus 296 G~~Pi~av~~-~~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l-~~~~~~~G~~l~~~L~~l----~ 369 (453)
T PRK06943 296 GYLPLSLVLS-RDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAEDDV-LARNARKSARLRAALAPL----A 369 (453)
T ss_pred CcccceEEEE-cHHHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHH----h
Confidence 5 47888999 889988775311 1 23456666555554443 3322 233333333333333322 2
Q ss_pred hc-CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHH
Q 042816 74 QL-GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMER 151 (163)
Q Consensus 74 ~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~ 151 (163)
++ ++.-.+. -|+++-+++...- .........+.+.+++ +||.+.|. + +.+|++... ++++++++++++
T Consensus 370 ~~~~v~~vrG-~Gl~~gvel~~~~-~~~~~~~~~i~~~~~~-~Gll~~~~---g----~~l~~~Ppl~it~~eid~~~~~ 439 (453)
T PRK06943 370 AHPQVRHLRQ-RGTIFAFDVALDG-DAARTFSRRFFEAALE-RELLLRPI---G----TTVYLMPPYVLDDDEIAWLAER 439 (453)
T ss_pred cCCCEEeEec-cccEEEEEEccCC-CcchHHHHHHHHHHHH-CCcEEEec---C----CEEEEeCCCcCCHHHHHHHHHH
Confidence 22 3332333 3445555654210 0011124567777776 89999763 1 358888332 388999999999
Q ss_pred HHHHHHHh
Q 042816 152 IRRISQTC 159 (163)
Q Consensus 152 l~~~~~~~ 159 (163)
+.+++.++
T Consensus 440 l~~al~~~ 447 (453)
T PRK06943 440 TRATLDAT 447 (453)
T ss_pred HHHHHHHH
Confidence 99998765
No 276
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=96.69 E-value=0.14 Score=40.86 Aligned_cols=141 Identities=8% Similarity=0.046 Sum_probs=74.8
Q ss_pred eeEEEEEecCHHHHHHHHHhh--cccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-ccc
Q 042816 7 FRISVIYSYNNSVLAAAKKLA--RFSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQLGI-ECA 80 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~-~~~ 80 (163)
+-+|.+++ .+++.+.+.... ..++.++++-.++.+.|+ +++. .++.+++-+.+++..+ +..+++++ .-.
T Consensus 304 ~P~~av~~-~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l-~~~~~~~g~~l~~~L~---~l~~~~~~i~~v 378 (459)
T PRK06082 304 VPIAAMIT-KDKYNTAAQISLGHYTHEKSPLGCAAALATIEVIEQEGL-LEKVKADSQFMRERLL---EMKAKYPLIGDV 378 (459)
T ss_pred CcceEEEE-cHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHH---HHHhhCCCeeee
Confidence 47888888 777654432111 123456666555544443 2221 2333333333333222 22222332 222
Q ss_pred cCCceeEEEeecCCcc--cCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLI--SSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~ 157 (163)
... |.++-+++...- ..........+...+++ +||.+.|. + .+.+|++... +++++++++++++.+++.
T Consensus 379 rG~-Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~---~---~~~i~~~Ppl~it~~eid~~~~~l~~~l~ 450 (459)
T PRK06082 379 RGI-GLLWGVELVTDRHTKERAYDEAEAVLYRCLN-NGLSFKVS---Q---GNVIQLSPPLIITREELTQALAILEEAIA 450 (459)
T ss_pred eec-cceeEEEEccCccccCccHHHHHHHHHHHHh-CCCEEEec---C---CCEEEEeCCCccCHHHHHHHHHHHHHHHH
Confidence 333 455556664210 01111124566777776 89998763 1 3678888642 488999999999999987
Q ss_pred Hhh
Q 042816 158 TCK 160 (163)
Q Consensus 158 ~~~ 160 (163)
++.
T Consensus 451 ~~~ 453 (459)
T PRK06082 451 KIC 453 (459)
T ss_pred HHh
Confidence 764
No 277
>PLN02271 serine hydroxymethyltransferase
Probab=96.66 E-value=0.078 Score=43.20 Aligned_cols=97 Identities=10% Similarity=0.096 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCcccc-CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC---CCC
Q 042816 55 NINRERLRRLYVKFVAGLRQLGIECAK-SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC---IEP 130 (163)
Q Consensus 55 ~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~---~~~ 130 (163)
....+...+|.+.|.+.|.+.|+++.. ..-+-.+|+|+.... .+.....+ +++..||.+..-.-++. ..+
T Consensus 434 k~Ya~QVv~NAkaLA~~L~~~G~~vv~ggTdnHlvLvDl~~~g-----~~G~~ae~-~Le~~~I~~Nkn~iP~d~~~~~p 507 (586)
T PLN02271 434 KAYMQQVKKNAQALASALLRRKCRLVTGGTDNHLLLWDLTTLG-----LTGKNYEK-VCEMCHITLNKTAIFGDNGTISP 507 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCeEeeCCCCcceeeecCcccC-----CCHHHHHH-HHHHcCeEeccccCCCCCCCCCC
Confidence 344445556899999999999988753 333445788885421 13444444 55668999864332221 126
Q ss_pred ceEEEEEec-----CChhHHHHHHHHHHHHHH
Q 042816 131 GWFSFSFTL-----LTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 131 ~~iRi~~~~-----~~~~~l~~~~~~l~~~~~ 157 (163)
+.+||.... ..++++++..+.|.++++
T Consensus 508 sGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 508 GGVRIGTPAMTSRGCLESDFETIADFLLRAAQ 539 (586)
T ss_pred CcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 789998754 345677776666666654
No 278
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=96.63 E-value=0.23 Score=38.97 Aligned_cols=64 Identities=9% Similarity=-0.100 Sum_probs=44.7
Q ss_pred CceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
.++..|++++.++++.+.+...... .+++++.+.++...+ ++++...+...++...+.+.|+++
T Consensus 212 ~~~~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a~l~~~gl-------~tl~~r~~~~~~na~~la~~L~~~ 277 (405)
T PRK08776 212 SDVVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLRGL-------RTLDARLRVHQENADAIAALLDGH 277 (405)
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhh-------CcHHHHHHHHHHHHHHHHHHHHcC
Confidence 3588999988678888888765553 346666666555433 334666677777888888888876
No 279
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=96.63 E-value=0.22 Score=38.94 Aligned_cols=66 Identities=17% Similarity=0.150 Sum_probs=40.7
Q ss_pred CCCCcee-EEEEEecCHHHHHHHHHhhc--cc--CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 2 LSLPGFR-ISVIYSYNNSVLAAAKKLAR--FS--SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 2 ~~~~G~R-iG~~i~~~~~~~~~~~~~~~--~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
+|.+|.+ .|++++ ++++++.++.... .. ..+++....+...|+.- ....+...++...+.+.|+++
T Consensus 207 lgg~g~~~gG~v~~-~~~li~~l~~~~~~~~~g~~l~~~~a~l~l~~L~tl-------~~r~~~~~~na~~la~~L~~~ 277 (391)
T TIGR01328 207 IGGHGDVVAGLICG-KAELLQQIRMVGIKDMTGSVISPFDAWLILRGLKTL-------NIRMKRHSENAMKVAEYLKSH 277 (391)
T ss_pred ccCCCCceEEEEEc-CHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhCcCcH-------HHHHHHHHHHHHHHHHHHHhC
Confidence 5778877 477777 8999888876432 22 34444444444444432 233455566777788888776
No 280
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=96.62 E-value=0.049 Score=43.07 Aligned_cols=57 Identities=23% Similarity=0.335 Sum_probs=40.3
Q ss_pred eeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHH
Q 042816 85 GFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRR 154 (163)
Q Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~ 154 (163)
|.++.++++.. .....+++.|++ +||.+.|.. .+.+|++... +++++++++++.|.+
T Consensus 373 G~~~~i~~~~~------~~~~~~~~~l~~-~Gvl~~~~g------~~~lr~~P~l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 373 GLMCAFDLPST------ADRDEVIRQLYR-EGVLLLGCG------ERSIRFRPPLTVTREEIDAAIDAIRR 430 (431)
T ss_pred ceeEEEEeCCH------HHHHHHHHHHHh-CCeEEecCC------CCeEEEECCccCCHHHHHHHHHHHHh
Confidence 55666677642 134578888876 899997742 3568877653 488999999998875
No 281
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=96.62 E-value=0.073 Score=42.08 Aligned_cols=130 Identities=9% Similarity=0.010 Sum_probs=73.8
Q ss_pred eEEEEEecCHHHHHHHHHhh-------cccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc----C
Q 042816 8 RISVIYSYNNSVLAAAKKLA-------RFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL----G 76 (163)
Q Consensus 8 RiG~~i~~~~~~~~~~~~~~-------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g 76 (163)
-+|-+++ ++++.+.+.... ..++.++++-.++.+.|+.- ++ +...+..+++-+++.+.|+++ .
T Consensus 282 p~~av~~-~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i---~~--~~~~~~~~~~g~~l~~~l~~l~~~~~ 355 (428)
T PRK07986 282 TLSATLT-TREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLL---ES--GDWQQQVAAIEAQLREELAPLRDAPM 355 (428)
T ss_pred cCcchhc-hHHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHH---Hh--CCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5566677 788888886521 12345666655555444321 10 012333333344444444432 2
Q ss_pred CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 77 IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 77 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
+.-.+.. |.++-+.+... .+...+.+.+++ +||++.|. .+.+|+.... ++++++++++++|.++
T Consensus 356 i~~vRg~-Gl~~~ve~~~~------~~~~~~~~~l~~-~Gl~~~~~-------g~~i~~~Ppl~it~~ei~~~~~~l~~~ 420 (428)
T PRK07986 356 VADVRVL-GAIGVVETTRP------VNMAALQRFFVE-QGVWIRPF-------GKLIYLMPPYIILPEQLQRLTAAVNRA 420 (428)
T ss_pred EEeEecc-ceEEEEEeCCc------ccHHHHHHHHHH-CCcEEEec-------CCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 2222222 44455555432 135678888876 89999763 1478886542 4899999999999998
Q ss_pred HHH
Q 042816 156 SQT 158 (163)
Q Consensus 156 ~~~ 158 (163)
+..
T Consensus 421 l~~ 423 (428)
T PRK07986 421 VQD 423 (428)
T ss_pred Hhh
Confidence 864
No 282
>PRK05965 hypothetical protein; Provisional
Probab=96.60 E-value=0.23 Score=39.72 Aligned_cols=141 Identities=12% Similarity=0.109 Sum_probs=77.6
Q ss_pred c-eeEEEEEecCHHHHHHHHHh-------hc--ccCCChHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042816 6 G-FRISVIYSYNNSVLAAAKKL-------AR--FSSVSAPSQNLLVSML---SDTKFVQKFININRERLRRLYVKFVAGL 72 (163)
Q Consensus 6 G-~RiG~~i~~~~~~~~~~~~~-------~~--~~~~s~~~q~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~l~~~l 72 (163)
| +-+|.+++ ++++.+.+..- .. .++.++++-.++.+.| ++++. -++.+++-+.+.+..+.+
T Consensus 289 G~~Pi~av~~-~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~~~l-~~~~~~~g~~l~~~l~~l---- 362 (459)
T PRK05965 289 GYVPMGAVLM-SDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGGL-LANGQKAGPRFAAGLDAL---- 362 (459)
T ss_pred CCcceeEEEE-cHHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHhh----
Confidence 5 47999999 89998877531 11 2355666665555444 33322 233333333333332221
Q ss_pred hhcC-CccccCCceeEEEeecCCcc--cCC-C--hhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHH
Q 042816 73 RQLG-IECAKSNGGFYCWADMSGLI--SSY-S--EKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDI 145 (163)
Q Consensus 73 ~~~g-~~~~~~~~g~~~~~~~~~~~--~~~-~--~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l 145 (163)
.++. +.-.+.. |+++-+++...- +.+ . ..-...+.+.+++ +||.+.+. + .+.+|+.... ++++++
T Consensus 363 ~~~~~v~~vrG~-Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~-~Gll~~~~---g---~~~i~~~PpL~it~~ei 434 (459)
T PRK05965 363 RAHPLVGDVRGR-GLLGALELVADKATKTPFDAALDPADRIFDRAYA-NGLVFRAF---G---DGVLGFAPALCCTEGEF 434 (459)
T ss_pred ccCCCEEEEeec-ceEEEEEEeccccccCCCCchhHHHHHHHHHHHh-CCeEEEec---C---CcEEEEECCCcCCHHHH
Confidence 2232 2222333 444555553210 000 0 0123567777776 89999752 1 4678888543 488999
Q ss_pred HHHHHHHHHHHHHhh
Q 042816 146 HVVMERIRRISQTCK 160 (163)
Q Consensus 146 ~~~~~~l~~~~~~~~ 160 (163)
+++++++.+++.++.
T Consensus 435 ~~~~~~l~~~l~~~~ 449 (459)
T PRK05965 435 DLIFERTRKTLDDVL 449 (459)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998764
No 283
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=96.59 E-value=0.1 Score=41.81 Aligned_cols=141 Identities=12% Similarity=0.150 Sum_probs=72.3
Q ss_pred CceeEEEEEecCHHHHHHHHHhhc--c---cCCChHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLAR--F---SSVSAPSQNLLVSML---SDTKFVQKFININRERLRRLYVKFVAGLRQLG 76 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~--~---~~~s~~~q~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 76 (163)
.|+-+|.+++ ++++.+.+..... . ++.+++...++.+.| ++++. .++++++-+.+ ++.|.+...++|
T Consensus 318 gG~Pigav~g-~~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~~~~-~~~~~~~g~~l---~~~L~~l~~~~g 392 (474)
T PLN02482 318 GGLPVGAYGG-RREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQPGT-YEYLDKITKKL---IQGILEAGKKAG 392 (474)
T ss_pred CCCceEEEEE-cHHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhccCH-HHHHHHHHHHH---HHHHHHHHHhcC
Confidence 3677899988 8999988863222 1 234566655444443 33211 22222222222 222333333334
Q ss_pred Cccc-cCCceeEEEeecCC-ccc------CCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHH
Q 042816 77 IECA-KSNGGFYCWADMSG-LIS------SYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVV 148 (163)
Q Consensus 77 ~~~~-~~~~g~~~~~~~~~-~~~------~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~ 148 (163)
..+. ..-+|++ -+.+.. ... ..+......+++.+++ +||++.|.. +.. ++ +++.. +++++++.
T Consensus 393 ~~~~~~~v~g~~-gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~-~Gv~~~~~~-~~~---~~--psl~h-t~~dId~~ 463 (474)
T PLN02482 393 HEMCGGYISGMF-GFFFTEGPVYNFADAKKSDTAKFARFHRGMLE-EGVYLAPSQ-FEA---GF--TSLAH-TEEDIDFT 463 (474)
T ss_pred CCEEEcccceEE-EEEEecCCccChhhhccCCHHHHHHHHHHHHH-CCeEEeccC-CCC---Cc--CCCCC-CHHHHHHH
Confidence 4433 2223433 122211 000 0111123567777876 899998732 111 11 45454 88999999
Q ss_pred HHHHHHHHHHh
Q 042816 149 MERIRRISQTC 159 (163)
Q Consensus 149 ~~~l~~~~~~~ 159 (163)
++.+.+++.++
T Consensus 464 l~al~~~l~~~ 474 (474)
T PLN02482 464 IAAAERVLARI 474 (474)
T ss_pred HHHHHHHHHhC
Confidence 99999988653
No 284
>PRK07036 hypothetical protein; Provisional
Probab=96.58 E-value=0.19 Score=40.29 Aligned_cols=139 Identities=9% Similarity=0.019 Sum_probs=77.9
Q ss_pred eeEEEEEecCHHHHHHHHHh-------hc--ccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042816 7 FRISVIYSYNNSVLAAAKKL-------AR--FSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQ 74 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~-------~~--~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (163)
+-+|.+++ ++++.+.+..- .. .++.+++.-.++.+.|+ ++.. .+..+++-+.+++..+. +++
T Consensus 297 ~Pi~av~~-~~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~~~l-~~~~~~~g~~l~~~L~~----l~~ 370 (466)
T PRK07036 297 QPLGAVII-SERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMEREGL-CEHVREVGPYFEERLAS----LRE 370 (466)
T ss_pred cccEEEEE-cHHHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHH----hcc
Confidence 46899999 89998887531 11 23456666655555443 3222 34444444444443332 233
Q ss_pred cCCccccCCceeEEEeecCCcc-cC-C---ChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHH
Q 042816 75 LGIECAKSNGGFYCWADMSGLI-SS-Y---SEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVV 148 (163)
Q Consensus 75 ~g~~~~~~~~g~~~~~~~~~~~-~~-~---~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~ 148 (163)
+.+-.....-|.++.+++...- .. + .......+...+++ +||.+.|. + +.+|++... +++++++++
T Consensus 371 ~~~v~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~---~----~~~~l~Ppl~it~~~id~~ 442 (466)
T PRK07036 371 LPLVGDVRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQE-RGLLVRPL---E----HLCVLSPPLIITRAQIDEI 442 (466)
T ss_pred CCCEEEEEeeceEEEEEEccCccccCCCCchhHHHHHHHHHHHH-CCcEEeec---C----CEEEEeCCCcCCHHHHHHH
Confidence 3322222233555666663211 00 0 00123567777776 89999763 1 357777442 488999999
Q ss_pred HHHHHHHHHHh
Q 042816 149 MERIRRISQTC 159 (163)
Q Consensus 149 ~~~l~~~~~~~ 159 (163)
++++.+++.++
T Consensus 443 ~~~l~~al~~~ 453 (466)
T PRK07036 443 VAILRAAIEET 453 (466)
T ss_pred HHHHHHHHHHH
Confidence 99998888765
No 285
>PRK08064 cystathionine beta-lyase; Provisional
Probab=96.56 E-value=0.22 Score=38.83 Aligned_cols=66 Identities=11% Similarity=0.011 Sum_probs=40.1
Q ss_pred CceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
+|...|++++.++++++.+......++.+...+.+.. .+..- +.+....+...++...+.+.|+++
T Consensus 205 ~~~laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~a~l-~~~gl----~tl~~R~~~~~~~a~~la~~L~~~ 270 (390)
T PRK08064 205 SDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWL-VLRGL----KTLHVRLEHSSETANKIALYLQEH 270 (390)
T ss_pred ccceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHH-HHccc----CcHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456677777467899999888776665544444333 22221 223444455566777788888776
No 286
>PRK12403 putative aminotransferase; Provisional
Probab=96.54 E-value=0.24 Score=39.57 Aligned_cols=143 Identities=7% Similarity=-0.007 Sum_probs=73.2
Q ss_pred eEEEEEecCHHHHHHHHHhhc------ccCCChHHHHHHHHhcCChHHHHHHHHHHH-HHHHHHHHHHHHHhhhcCCccc
Q 042816 8 RISVIYSYNNSVLAAAKKLAR------FSSVSAPSQNLLVSMLSDTKFVQKFININR-ERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 8 RiG~~i~~~~~~~~~~~~~~~------~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
-+|-+++ .+++.+.+..... .++.++++-.++.+.|+--+. +..+++.+ +.-...++.+.+...++++-..
T Consensus 299 Piga~v~-~~~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~~-~~l~~~~~~~~g~~l~~~L~~l~~~~~~i~~ 376 (460)
T PRK12403 299 PMGGLVL-SKRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKALRD-EGVVTRVKDDTGPYLQRCLREVFGDHPLVGE 376 (460)
T ss_pred ceEEEEE-CHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHhcCCCEEe
Confidence 6788888 8888888753211 123566665555554432100 11222222 2222222333333334432222
Q ss_pred cCCceeEEEeecCCc--ccCC-Ch--hhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGL--ISSY-SE--KGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRR 154 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~--~~~~-~~--~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~ 154 (163)
...-|.++-+++... ...+ .. .....+...+++ +||.+.+. .+.+|++... +++++++++++.+.+
T Consensus 377 vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gll~~~~-------~~~~~l~Ppl~it~~eid~~~~~l~~ 448 (460)
T PRK12403 377 VQGAGLVAALQFAEDKATRKRFANENDLAWRCRTIGFE-EGVIIRST-------LGRMIMAPALVAGRAEIDELVDKTRI 448 (460)
T ss_pred EeecceEEEEEEccCccccccccchhHHHHHHHHHHHh-CCEEEEec-------CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 223345555565321 1000 00 012334455565 89999752 1347776653 488999999999999
Q ss_pred HHHHhh
Q 042816 155 ISQTCK 160 (163)
Q Consensus 155 ~~~~~~ 160 (163)
++.++.
T Consensus 449 al~~~~ 454 (460)
T PRK12403 449 AVDRTA 454 (460)
T ss_pred HHHHHH
Confidence 998874
No 287
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=96.50 E-value=0.11 Score=40.88 Aligned_cols=147 Identities=16% Similarity=0.074 Sum_probs=80.6
Q ss_pred CceeEEEEEecCHHHHHHHHHhhcc-----cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLARF-----SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIEC 79 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~~-----~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 79 (163)
.|+-+|.+-+ .+++.+.+.-.... ++-|+++..+....++.-.--+...+++.+.=.+..+-+.+.+.++|+.+
T Consensus 272 GGlP~ga~gG-r~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~~~y~~l~~~~~~L~~gl~~~~~~~g~~~ 350 (432)
T COG0001 272 GGLPIGAFGG-RAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRAAAERHGIPL 350 (432)
T ss_pred CCcceeeecc-HHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 4677777777 78888866554431 34566666655554442110001223333333333444445555556554
Q ss_pred c--cCCceeEEEeec-CC-cc----cCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHH
Q 042816 80 A--KSNGGFYCWADM-SG-LI----SSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMER 151 (163)
Q Consensus 80 ~--~~~~g~~~~~~~-~~-~~----~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~ 151 (163)
. ...+-|-++..- +. -. ..+. ..-..+...+++ +||++.|+. | +..-+|... ++++++..++.
T Consensus 351 ~v~~~gsm~~i~F~~~~~~n~~da~~sd~-~~~~~~~~~~l~-~GV~l~ps~-~-----ea~flS~ah-te~di~~~~~a 421 (432)
T COG0001 351 TVNRVGSMFGIFFTEEGVRNYADAKRSDV-ERFAKFFHHLLN-RGVYLAPSQ-F-----EAGFLSTAH-TEEDIDRTLEA 421 (432)
T ss_pred EEeeecceEEEEecCCCCCCHHHHHhhch-HHHHHHHHHHHh-CCcccCCcc-c-----cceeeeccc-CHHHHHHHHHH
Confidence 4 333322233221 11 00 0111 134456667887 899999864 2 234567665 99999999999
Q ss_pred HHHHHHHhhh
Q 042816 152 IRRISQTCKS 161 (163)
Q Consensus 152 l~~~~~~~~~ 161 (163)
+.+++.++..
T Consensus 422 ~~~~~~~~~~ 431 (432)
T COG0001 422 ADEAFKELAG 431 (432)
T ss_pred HHHHHHHhhc
Confidence 9999887754
No 288
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=96.50 E-value=0.11 Score=41.00 Aligned_cols=41 Identities=10% Similarity=0.177 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHh
Q 042816 106 ELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 106 ~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~ 159 (163)
.+.+.+++ +||.+.| ++|+.. ++++++++.++.+.+++..+
T Consensus 366 ~~~~~l~~-~Gi~~p~-----------l~is~~-ht~~dId~~l~~l~~~l~~~ 406 (431)
T PRK06209 366 LFLQETIR-RGVLMPS-----------LVVSYA-HGDADIERTIDAVHGALGVY 406 (431)
T ss_pred HHHHHHHH-CCccccc-----------cccccc-CCHHHHHHHHHHHHHHHHHH
Confidence 67777776 8997622 567744 49999999999999988776
No 289
>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]
Probab=96.46 E-value=0.21 Score=38.31 Aligned_cols=139 Identities=10% Similarity=0.060 Sum_probs=87.0
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHh-hc--------------ccCCChHHHHHHHHhcC----ChHHHHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKL-AR--------------FSSVSAPSQNLLVSMLS----DTKFVQKFININRERLR 62 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~-~~--------------~~~~s~~~q~~~~~~l~----~~~~~~~~~~~~~~~~~ 62 (163)
+|-.| ++.+|. .+++++..... .. +.+++.+.-..+...++ .+. ++.+.+.-.
T Consensus 202 lGpaG--ltvvIv-r~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GG-----l~~~~~rn~ 273 (365)
T COG1932 202 LGPAG--LTVVIV-RPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGG-----LEALEARNQ 273 (365)
T ss_pred cCccc--eEEEEE-cHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHH
Confidence 56677 899999 88888888665 11 11334444443333332 222 356666777
Q ss_pred HHHHHHHHHhhhcCCcc----ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe
Q 042816 63 RLYVKFVAGLRQLGIEC----AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT 138 (163)
Q Consensus 63 ~~~~~l~~~l~~~g~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~ 138 (163)
++.+.|++.+++.++.- ....+-+.+.+++... +-+..|...+.+ +|+...-|.. ..+.+|+++-
T Consensus 274 ~ka~~LY~~id~s~fy~~~v~~~~RS~mnV~f~~~~~------~ld~~fv~eae~-~gl~~lkGhr----~vgGmRasiy 342 (365)
T COG1932 274 AKAQLLYDWIDKSDFYRNLVAKANRSRMNVTFTLVDA------ELDKGFVAEAEA-AGLIYLKGHR----SVGGLRASIY 342 (365)
T ss_pred HHHHHHHHHHHhCCccccccchhhccceeEEEEcCcH------HHHHHHHHHHHH-cCCceecccc----CCCceeeeee
Confidence 78999999998874211 1345556666676542 245777777766 7777776621 2345999996
Q ss_pred c-CChhHHHHHHHHHHHHHHHh
Q 042816 139 L-LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 139 ~-~~~~~l~~~~~~l~~~~~~~ 159 (163)
. .+.|.++..++-|..+.+++
T Consensus 343 nA~~~e~veaL~~fm~~f~~~~ 364 (365)
T COG1932 343 NAVPLEDVEALTDFMDWFEETY 364 (365)
T ss_pred cCCCHHHHHHHHHHHHHHHHhh
Confidence 4 57778777777666665543
No 290
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=96.29 E-value=0.17 Score=38.19 Aligned_cols=101 Identities=13% Similarity=-0.007 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCccccC----CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC
Q 042816 52 KFININRERLRRLYVKFVAGLRQLGIECAKS----NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC 127 (163)
Q Consensus 52 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~ 127 (163)
+=++.....+++..+.++..|+++|++.... .-.----+.+|..+ |-.+++.++..+.++-+..|-. .
T Consensus 278 eGL~~~~~rH~e~s~~l~~~l~~~GLq~fv~~e~~rlptvttv~vp~gv------Dw~dVv~~~~~~~~vei~gglg--~ 349 (385)
T KOG2862|consen 278 EGLENSWRRHREMSKWLKLSLEALGLQLFVVDEELRLPTVTTVKVPYGV------DWKDVVAYAMSHYVVEIGGGLG--P 349 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccceecChhhccCcceeeecCCCC------CHHHHHHHHHHhcCEEeccccC--C
Confidence 3356777788889999999999987543211 11111125667665 8899999998855777665433 2
Q ss_pred CCCceEEEEEecC--ChhHHHHHHHHHHHHHHHhh
Q 042816 128 IEPGWFSFSFTLL--TEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 128 ~~~~~iRi~~~~~--~~~~l~~~~~~l~~~~~~~~ 160 (163)
..+..+||.+..+ +.|.++..++.|+..+.+.+
T Consensus 350 ~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~~~ 384 (385)
T KOG2862|consen 350 TVGKVFRIGLLGCNANVEYIDNVVELLKLALQRKK 384 (385)
T ss_pred CcccEEEEEEeeccCCcHHHHHHHHHHHHHHhhcc
Confidence 3378999998553 66789999999988887654
No 291
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=96.26 E-value=0.29 Score=39.19 Aligned_cols=139 Identities=12% Similarity=0.096 Sum_probs=77.7
Q ss_pred c-eeEEEEEecCHHHHHHHHHh-------hc--ccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042816 6 G-FRISVIYSYNNSVLAAAKKL-------AR--FSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGL 72 (163)
Q Consensus 6 G-~RiG~~i~~~~~~~~~~~~~-------~~--~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l 72 (163)
| +-+|.+++ ++++.+.+..- .. .++.+++.-.++.+.|+ +.+. -++.+++-+.+++..+.+
T Consensus 289 G~~Pi~av~~-~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~~~l-~~~~~~~G~~l~~~L~~l---- 362 (466)
T PRK07030 289 GYLPLAAVLT-TDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQDNV-IENNRALARRMAEATAHL---- 362 (466)
T ss_pred CcccceEEEe-cHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHH----
Confidence 5 47899999 89998877531 11 23456777665555543 3221 233333333333333322
Q ss_pred hhc-CCccccCCceeEEEeecCCc-ccCCC----hhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHH
Q 042816 73 RQL-GIECAKSNGGFYCWADMSGL-ISSYS----EKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDI 145 (163)
Q Consensus 73 ~~~-g~~~~~~~~g~~~~~~~~~~-~~~~~----~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l 145 (163)
.++ .+.-... -|+++-+++... ..+.+ ......+.+.+++ +||.+.|. .+.+|+... .++++++
T Consensus 363 ~~~~~v~~vrG-~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~-~Gvl~~~~-------g~~i~~~Ppl~it~~ei 433 (466)
T PRK07030 363 ADHPHVAEVRQ-TGMILAIEMVQDKASKTPYPWQERRGLKVYQHALE-RGALLRPL-------GSVVYFLPPYVITPEQI 433 (466)
T ss_pred hcCCCEEEeEe-ceeEEEEEeccCccccccCcchhHHHHHHHHHHHH-CCeEEEec-------CCEEEEECCccCCHHHH
Confidence 223 2222333 345555666321 10000 0012467777776 89999762 146888743 3588999
Q ss_pred HHHHHHHHHHHHHh
Q 042816 146 HVVMERIRRISQTC 159 (163)
Q Consensus 146 ~~~~~~l~~~~~~~ 159 (163)
+++++++.++++++
T Consensus 434 d~~~~~l~~al~~~ 447 (466)
T PRK07030 434 DFLAEVASEGIDIA 447 (466)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999876
No 292
>PRK07503 methionine gamma-lyase; Provisional
Probab=96.13 E-value=0.48 Score=37.17 Aligned_cols=66 Identities=11% Similarity=0.010 Sum_probs=41.2
Q ss_pred CCCCc-eeEEEEEecCHHHHHHHHHh--hcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 2 LSLPG-FRISVIYSYNNSVLAAAKKL--ARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 2 ~~~~G-~RiG~~i~~~~~~~~~~~~~--~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
++.+| +|.||++. ++++++.++.. ... ..++++.+..+...|+.- +..+++ ..++...+.+.|+++
T Consensus 213 l~g~gd~~gG~v~~-~~~l~~~l~~~~~~~~~g~~~s~~~a~l~l~~L~tl---~~r~~~----~~~na~~~a~~L~~~ 283 (403)
T PRK07503 213 LGGHGDITAGLVVG-GKALADRIRLEGLKDMTGAVMSPFDAFLLMRGLKTL---ALRMDR----HCASAQAVAEWLARH 283 (403)
T ss_pred ccCCCceeEEEEEc-CHHHHHHHHhhhHHhCcCCCCCHHHHHHHHcCcchH---HHHHHH----HHHHHHHHHHHHHhC
Confidence 45554 88999998 89998888743 322 346666666555555542 232333 335677777777776
No 293
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=96.05 E-value=0.35 Score=37.55 Aligned_cols=25 Identities=8% Similarity=0.094 Sum_probs=19.8
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhc
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLAR 28 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~ 28 (163)
.+|.+.|+++++++++.+.++..+.
T Consensus 184 ~~g~~gG~v~~~~~~~~~~~~~~~~ 208 (376)
T TIGR02379 184 TSGGEGGALLINDQAFIERAEIIRE 208 (376)
T ss_pred cccCCceEEEECCHHHHHHHHHHHH
Confidence 5678999999966888888876654
No 294
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=95.96 E-value=0.56 Score=37.66 Aligned_cols=137 Identities=9% Similarity=0.079 Sum_probs=76.1
Q ss_pred eEEEEEecCHHHHHHHHHh---h-----cccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 042816 8 RISVIYSYNNSVLAAAKKL---A-----RFSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQLG 76 (163)
Q Consensus 8 RiG~~i~~~~~~~~~~~~~---~-----~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 76 (163)
-+|.+++ ++++.+.+..- . ..++.+++.-.++.+.|+ +... -+...++-+.++ .+.+.++++.
T Consensus 314 Plaav~~-~~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~~l-~~~~~~~g~~l~----~~~~~~~~~~ 387 (472)
T PRK08742 314 PLSAVLA-TQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADDDV-IARNQPTAARMT----QLAAQIGEHP 387 (472)
T ss_pred Ccceeec-cHHHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHH----HHHHHHhcCC
Confidence 6888888 88988877531 1 123456666555555443 3222 233333333333 2333344442
Q ss_pred -CccccCCceeEEEeecCCcccCC-C--h--hhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHH
Q 042816 77 -IECAKSNGGFYCWADMSGLISSY-S--E--KGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVM 149 (163)
Q Consensus 77 -~~~~~~~~g~~~~~~~~~~~~~~-~--~--~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~ 149 (163)
+.-.+.. |+++-+++...-... . . .-...+.+.+++ +||.+.+. .+.+||.... ++++++++++
T Consensus 388 ~i~dvRG~-Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gll~~~~-------g~vi~~~PpL~it~~ei~~~~ 458 (472)
T PRK08742 388 HVADVRQA-GMVVAFELTRGGNKRTPFPPAARVGLHAYRAALA-RGVVLRPL-------GDVLYWMPPYCVDEAQLALLA 458 (472)
T ss_pred CeeeEecc-ceEEEEEeccCccccccCCchhHHHHHHHHHHHH-CCeEEEec-------CCEEEEECCCCCCHHHHHHHH
Confidence 2223333 455555653211000 0 0 012456677776 89999762 1468887754 4889999999
Q ss_pred HHHHHHHHHh
Q 042816 150 ERIRRISQTC 159 (163)
Q Consensus 150 ~~l~~~~~~~ 159 (163)
++|.+++.+.
T Consensus 459 ~~l~~~l~~~ 468 (472)
T PRK08742 459 DTTRHAIDEA 468 (472)
T ss_pred HHHHHHHHHH
Confidence 9999999865
No 295
>PLN02724 Molybdenum cofactor sulfurase
Probab=95.92 E-value=0.064 Score=45.79 Aligned_cols=99 Identities=18% Similarity=0.114 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc-------CCccccC---------CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCe
Q 042816 54 ININRERLRRLYVKFVAGLRQL-------GIECAKS---------NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKV 117 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~-------g~~~~~~---------~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi 117 (163)
+++..++..+..+++.+.|+++ ++.+..+ .++.+.| .+...- ..... ...+..|+..+||
T Consensus 338 ~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsF-nv~~~~--~~~v~-~~~v~~l~~~~gI 413 (805)
T PLN02724 338 ISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTF-NLKRAD--GSWVG-HREVEKLASLSGI 413 (805)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEE-EEEcCC--CCEeC-HHHHHHHHHhcCc
Confidence 4666777777788888888765 2555543 2344332 222110 00012 2334456666899
Q ss_pred EEcCCCCCCCC---------------------------------CCceEEEEEec-CChhHHHHHHHHHHHHH
Q 042816 118 NVTPGSSCHCI---------------------------------EPGWFSFSFTL-LTEKDIHVVMERIRRIS 156 (163)
Q Consensus 118 ~v~pg~~f~~~---------------------------------~~~~iRi~~~~-~~~~~l~~~~~~l~~~~ 156 (163)
.++.|..+... ..+.+|+|++. .+.++++..++.|.+..
T Consensus 414 ~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~ 486 (805)
T PLN02724 414 QLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSF 486 (805)
T ss_pred EEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHh
Confidence 99998665311 13899999975 37789999999888855
No 296
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=95.84 E-value=0.1 Score=40.40 Aligned_cols=106 Identities=15% Similarity=0.156 Sum_probs=56.7
Q ss_pred CceeEEEEEecCHHHHHHHHHhhcc-------------------cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLARF-------------------SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLY 65 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~~-------------------~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 65 (163)
+|.+.++++. |+++.+.+...... .+.+...+...+.+.... -+.+++..+.-+++.
T Consensus 185 ~g~gG~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~q---l~~l~~~~~~R~~~~ 260 (375)
T PRK11706 185 AGEGGALLIN-DPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQ---LEAADRINQRRLALW 260 (375)
T ss_pred ccCCeEEEEC-CHHHHHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 4888888877 88988876655421 123333332222222111 122344444444555
Q ss_pred HHHHHHhhhc---C-Cccc-cCC----ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcC
Q 042816 66 VKFVAGLRQL---G-IECA-KSN----GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTP 121 (163)
Q Consensus 66 ~~l~~~l~~~---g-~~~~-~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~p 121 (163)
+.+.+.|..+ | +... .+. ...++|+.++... +..++.+.|.+ +||.+.+
T Consensus 261 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~r~~l~~~L~~-~gI~~~~ 318 (375)
T PRK11706 261 QRYYDALAPLAEAGRIELPSIPDDCKHNAHMFYIKLRDLE------DRSALINFLKE-AGIMAVF 318 (375)
T ss_pred HHHHHHhcCCCcCCeeecCCCCCCCceeeEEEEEEECCcC------CHHHHHHHHHH-CCCCccc
Confidence 5666666554 1 3322 122 2334566666422 56788888876 8998764
No 297
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=95.80 E-value=0.68 Score=36.14 Aligned_cols=67 Identities=9% Similarity=-0.082 Sum_probs=40.0
Q ss_pred CCCC-ceeEEEEEecCHHHHHHHHHhhccc--CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 2 LSLP-GFRISVIYSYNNSVLAAAKKLARFS--SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 2 ~~~~-G~RiG~~i~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
++.+ +.+.||+++.++++.+.+....... ..+++....+...|+.- ....+...++...+.+.|+++
T Consensus 209 l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~L~tl-------~~R~~~~~~na~~la~~L~~~ 278 (388)
T PRK07811 209 IGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLTLRGLKTL-------AVRMDRHSENAEAVAEFLAGH 278 (388)
T ss_pred ecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCcH-------HHHHHHHHHHHHHHHHHHHhC
Confidence 3443 3678999985677777776555432 33444444444445442 233344566788888888877
No 298
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=95.76 E-value=0.57 Score=37.47 Aligned_cols=137 Identities=9% Similarity=0.047 Sum_probs=74.8
Q ss_pred eeEEEEEecCHHHHHHHHHh----h---c--ccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042816 7 FRISVIYSYNNSVLAAAKKL----A---R--FSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQ 74 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~----~---~--~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (163)
+-+|.+++ .+++.+.+..- . . .++.+++.-.++...|+ +... .++ .+++-+++.+.|++
T Consensus 300 ~Pi~av~~-~~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l-~~~-------~~~~g~~l~~~l~~ 370 (460)
T PRK06916 300 LPIAITVT-TDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYEKTNL-IEQ-------VARKTEYVATQLED 370 (460)
T ss_pred cccceeee-cHHHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHHhccH-HHH-------HHHHHHHHHHHHHH
Confidence 46888888 88888877521 1 1 13456666555555543 2221 222 33333333333333
Q ss_pred ---c-CCccccCCceeEEEeecCCcc--cCC---ChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhH
Q 042816 75 ---L-GIECAKSNGGFYCWADMSGLI--SSY---SEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKD 144 (163)
Q Consensus 75 ---~-g~~~~~~~~g~~~~~~~~~~~--~~~---~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~ 144 (163)
+ .+.-....| .++-+++.... +.. ...-...+...+++ +||++.|. .+.+|+..+ .+++++
T Consensus 371 l~~~~~v~~vrG~G-lm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~-~Gvl~~~~-------g~~l~~~Ppl~it~~~ 441 (460)
T PRK06916 371 LFALKHVGDIRQLG-LMVGIELVKNKETKEPFEWTERVGVQVCKRSRE-LGMLTRPL-------GNTIVFMPPLASTIDE 441 (460)
T ss_pred hhcCCCeEEeecCC-ceeeEEeecccccccCCCchhhHHHHHHHHHHH-CCeEEEec-------CCEEEEeCCcccCHHH
Confidence 2 122223344 44444553211 000 00012467777776 99999763 146787743 358899
Q ss_pred HHHHHHHHHHHHHHhhh
Q 042816 145 IHVVMERIRRISQTCKS 161 (163)
Q Consensus 145 l~~~~~~l~~~~~~~~~ 161 (163)
++++++++.+++.++..
T Consensus 442 id~~~~~l~~~l~~~~~ 458 (460)
T PRK06916 442 LDEMLRILYKAISDVTE 458 (460)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 99999999999987643
No 299
>PLN02880 tyrosine decarboxylase
Probab=95.68 E-value=0.27 Score=39.60 Aligned_cols=104 Identities=11% Similarity=0.042 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhc-CCcccc-CCceeEEEeecCCc-ccCCC-hhhHHHHHHHHHHhcCeEEcCCCCCCCCCC
Q 042816 55 NINRERLRRLYVKFVAGLRQL-GIECAK-SNGGFYCWADMSGL-ISSYS-EKGELELWDKLLNVAKVNVTPGSSCHCIEP 130 (163)
Q Consensus 55 ~~~~~~~~~~~~~l~~~l~~~-g~~~~~-~~~g~~~~~~~~~~-~~~~~-~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~ 130 (163)
.+..+..-+..+++.+.+++. ++++.. |+.++.+ ++++.. ..... ..-..++.+.|.++..+.+.+.. +. +.
T Consensus 379 ~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~~iv~-Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t~-~~--g~ 454 (490)
T PLN02880 379 QSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVC-FRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISHTV-LS--GK 454 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEE-EEEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEEEE-EC--CE
Confidence 444444446778888888877 777654 4555443 355421 10000 01124566677765677766543 22 36
Q ss_pred ceEEEEEecC--ChhHHHHHHHHHHHHHHHhhhc
Q 042816 131 GWFSFSFTLL--TEKDIHVVMERIRRISQTCKSH 162 (163)
Q Consensus 131 ~~iRi~~~~~--~~~~l~~~~~~l~~~~~~~~~~ 162 (163)
.++|+++... +.++++..++.|.+..+++...
T Consensus 455 ~~lR~~~~n~~tt~~di~~~~~~i~~~~~~~~~~ 488 (490)
T PLN02880 455 YVLRFAVGAPLTEERHVTAAWKVLQDEASKLLGK 488 (490)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 7999999652 5578999999998888776544
No 300
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=95.57 E-value=0.93 Score=36.13 Aligned_cols=144 Identities=12% Similarity=0.116 Sum_probs=89.8
Q ss_pred EEEEEecCHHHHHHHHHhhccc-------CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Q 042816 9 ISVIYSYNNSVLAAAKKLARFS-------SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAK 81 (163)
Q Consensus 9 iG~~i~~~~~~~~~~~~~~~~~-------~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~ 81 (163)
-|++...++++.+.+++....+ ..+.-...+++..|.+.-. +.+.+... .+.++|.+.|.+.|+.+..
T Consensus 260 GG~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e~~~-~~y~~~r~----~~a~~La~~L~~~Gvpv~~ 334 (450)
T TIGR02618 260 GGFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRDMEAMAIGIREAVD-YEYIEHRV----KQVRYLGDKLKAAGVPIVE 334 (450)
T ss_pred ceEEEeCCHHHHHHHHHHhhhcCCccccCchhhhhHHHHHHHHHHhhh-HHHHHHHH----HHHHHHHHHHHHCCCcccC
Confidence 4566646899999988875421 1233333344444443211 12222222 2477888999888999988
Q ss_pred CCceeEEEeecCCc---ccCCChhhHHHHHHHHHHhcCeEEcC-CCCC-CCC---------CCceEEEEEec--CChhHH
Q 042816 82 SNGGFYCWADMSGL---ISSYSEKGELELWDKLLNVAKVNVTP-GSSC-HCI---------EPGWFSFSFTL--LTEKDI 145 (163)
Q Consensus 82 ~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~gi~v~p-g~~f-~~~---------~~~~iRi~~~~--~~~~~l 145 (163)
|.+|--++++.... +++..+ ....++..|..+.||.-.- |+.. +.+ .-+.+|+.+.. -+.+.+
T Consensus 335 p~ggh~V~vda~~~lph~~~~~~-p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~ 413 (450)
T TIGR02618 335 PVGGHAVFLDARRFLPHIPQDQF-PAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIPRRVYTYAHM 413 (450)
T ss_pred CCCcceEEEEhHHhCCCCChhhC-hHHHHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeeeccccccccHhHH
Confidence 88888888887654 333333 6788888888888998543 4332 111 02689999864 255778
Q ss_pred HHHHHHHHHHHHH
Q 042816 146 HVVMERIRRISQT 158 (163)
Q Consensus 146 ~~~~~~l~~~~~~ 158 (163)
+...+.+..+.++
T Consensus 414 ~~v~~~~~~~~~~ 426 (450)
T TIGR02618 414 DVVADGIIKLYKH 426 (450)
T ss_pred HHHHHHHHHHHhh
Confidence 8888887776654
No 301
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=95.50 E-value=0.66 Score=40.61 Aligned_cols=106 Identities=9% Similarity=0.020 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc-CCccccCCceeE--EEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC
Q 042816 51 QKFININRERLRRLYVKFVAGLRQL-GIECAKSNGGFY--CWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC 127 (163)
Q Consensus 51 ~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~ 127 (163)
.+-+++..+....+.+++.+.|.+. ++.+..|.+.++ +.++++. +.+..-.+..++.+.|++ +||...- ..|.
T Consensus 801 ~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~~~~~~hEfv~~~~~-l~~~~g~~~~di~krL~d-~Gihapt-~~~p- 876 (993)
T PLN02414 801 SEGLTDASKIAILNANYMAKRLEGHYPVLFRGKNGTCAHEFIIDLRP-FKNTAGIEPEDVAKRLMD-YGFHAPT-MSWP- 876 (993)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCeeeeEEEeccc-cccccCCCHHHHHHHHHH-cCcEEee-eccc-
Confidence 3456777888888999999999875 566655554321 2344442 111101256889999985 9998654 3353
Q ss_pred CCCceEEEEEec-CChhHHHHHHHHHHHHHHHhhh
Q 042816 128 IEPGWFSFSFTL-LTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 128 ~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
.++.+||+... .+.++++.+++.|..+..+...
T Consensus 877 -v~~~lmiepTE~~skeelDrf~~al~~i~~e~~~ 910 (993)
T PLN02414 877 -VPGTLMIEPTESESKAELDRFCDALISIREEIAD 910 (993)
T ss_pred -cCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 37899999864 3778999999999888777653
No 302
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=95.46 E-value=0.49 Score=37.94 Aligned_cols=61 Identities=18% Similarity=0.137 Sum_probs=43.7
Q ss_pred CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHH
Q 042816 83 NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRIS 156 (163)
Q Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~ 156 (163)
.-|+++-++++.. .....+.+.+++ +||.+.+. +.+.+||.... ++++++++++++|.+++
T Consensus 403 G~Glm~gie~~~~------~~~~~i~~~~~~-~Gvl~~~~------g~~~ir~~Ppl~it~~eid~~~~~l~~~~ 464 (464)
T TIGR00699 403 GRGTFIAWDTPDE------AKRDKLLKKARN-NGVNIGGC------GVKAIRLRPMLVFQKHHADIFLEIISKII 464 (464)
T ss_pred CeEEEEEEecCCH------HHHHHHHHHHHH-CCcEEecC------CCCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 3466666677531 135678888876 89999763 24789998764 58899999999998753
No 303
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=95.45 E-value=1 Score=35.96 Aligned_cols=144 Identities=11% Similarity=0.102 Sum_probs=93.0
Q ss_pred EEEEEecCHHHHHHHHHhhcc----c---CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Q 042816 9 ISVIYSYNNSVLAAAKKLARF----S---SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAK 81 (163)
Q Consensus 9 iG~~i~~~~~~~~~~~~~~~~----~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~ 81 (163)
-|++++.++++.+.++..... . +.+.--..+++..|.+... .++++.... +.++|.+.|.+.|+.+..
T Consensus 267 GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~~-~~y~~~ri~----~~~~l~~~L~~~Gvpv~~ 341 (460)
T PRK13237 267 GGFLAMNDEELFDEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQ-YEYIEHRVG----QVRYLGEKLLAAGVPIVE 341 (460)
T ss_pred ceEEEECCHHHHHHHHHhccccCCCcCCCChhhhHHHHHHhHHHhhch-HHHHHHHHH----HHHHHHHHHHHCCCceec
Confidence 488888889999999887442 1 2333233444444443211 233333333 568899999999999999
Q ss_pred CCceeEEEeecCCc---ccCCChhhHHHHHHHHHHhcCeEEcC-CCCC-CCC---------CCceEEEEEec--CChhHH
Q 042816 82 SNGGFYCWADMSGL---ISSYSEKGELELWDKLLNVAKVNVTP-GSSC-HCI---------EPGWFSFSFTL--LTEKDI 145 (163)
Q Consensus 82 ~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~gi~v~p-g~~f-~~~---------~~~~iRi~~~~--~~~~~l 145 (163)
|.||--++++.... +++..+ ....++..|..+.||.-.- |+.. +.+ .-+-+|+.+.. -+.+.+
T Consensus 342 p~ggH~v~vda~~~lph~~~~~~-p~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~ 420 (460)
T PRK13237 342 PVGGHAVFLDARRFLPHLPQDQF-PAQALAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRLTIPRRVYTYAHM 420 (460)
T ss_pred CCCceEEEEEhHHhCCCCCcccC-hHHHHHHHHHHHhCcCeEeecceecccCCCCCccCCCccceeeeccccccccHHHH
Confidence 99998888886553 333333 6788888888888998542 3321 110 02689999864 255778
Q ss_pred HHHHHHHHHHHHH
Q 042816 146 HVVMERIRRISQT 158 (163)
Q Consensus 146 ~~~~~~l~~~~~~ 158 (163)
+...+.+..+.++
T Consensus 421 ~~v~~~~~~~~~~ 433 (460)
T PRK13237 421 DVVADSVIKLYKH 433 (460)
T ss_pred HHHHHHHHHHHHh
Confidence 8788877776654
No 304
>PRK12566 glycine dehydrogenase; Provisional
Probab=95.28 E-value=0.96 Score=39.33 Aligned_cols=102 Identities=14% Similarity=0.079 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc-CCccccCCceeE--EEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCC
Q 042816 54 ININRERLRRLYVKFVAGLRQL-GIECAKSNGGFY--CWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEP 130 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~ 130 (163)
+.+..+.-..+.+++.+.|.+. ++.+.++++-++ +.+++...-...+ .+..++.+.|++ +||...- ..|. .+
T Consensus 773 Lk~aa~~ailnAnYla~rL~~~~~v~~~~~~~~~~hEfii~~~~l~~~~g-~~~~dvakRL~d-~Gihapt-~~fP--v~ 847 (954)
T PRK12566 773 LADASEVAILSANYLANQLGGAFPVLYRGRNERVAHECILDLRPLKAQTG-ISEEDVAKRLMD-YGFHAPT-MSFP--VP 847 (954)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhCCCCcCCCCCCeeeEEEEEccccccccC-CCHHHHHHHHHH-CCcEEeE-Eeec--cC
Confidence 6666666677889999999775 555543333211 2234332100011 266889999985 8998544 3443 27
Q ss_pred ceEEEEEec-CChhHHHHHHHHHHHHHHHhh
Q 042816 131 GWFSFSFTL-LTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 131 ~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~~ 160 (163)
+.+||+... .+.++++..++.|..+.++..
T Consensus 848 ~~LmIepTE~eskeEIDrf~eAL~~I~~e~~ 878 (954)
T PRK12566 848 GTLMVEPTESESKAELDRFVEAMLSIRAEIG 878 (954)
T ss_pred CEEEEEeeeeCCHHHHHHHHHHHHHHHHHHH
Confidence 899999864 377889999999888877654
No 305
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=95.09 E-value=1.2 Score=34.62 Aligned_cols=137 Identities=12% Similarity=0.060 Sum_probs=76.7
Q ss_pred CceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CC-ccc
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GI-ECA 80 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~-~~~ 80 (163)
.+++.|++++.++++.+.+...... ...+++....+..-++.- ....+.-.++...+.+.|+++ .+ ++.
T Consensus 198 ~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~~~~l~tl-------~~R~e~~~~na~~la~~L~~~~~v~~v~ 270 (378)
T TIGR01329 198 SDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGIKTL-------AIRIEKQQENARAIAMFLSTHPRVKKVR 270 (378)
T ss_pred ccceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHHHccCCCH-------HHHHHHHHHHHHHHHHHHHhCCCccEEE
Confidence 4588999988566676777766553 234444444334444432 333334445566666666655 22 111
Q ss_pred c----------------CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC-----------------
Q 042816 81 K----------------SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC----------------- 127 (163)
Q Consensus 81 ~----------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~----------------- 127 (163)
. ...|-.+.+++.. . ....+|++.| +..++.+.-|.....
T Consensus 271 ~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~-~-----~~~~~~~~~L-~~~~i~~s~G~~~sl~~~p~~~~~~~~~~~~~ 343 (378)
T TIGR01329 271 YAGLPSHPGFHLHFSQAKGAGSVLSFETGS-V-----ALSKRLVEAT-KLFSITVSFGSVNSLISMPCFMSHASIPAEVR 343 (378)
T ss_pred CCCCCCCccHHHHHHhCCCcceEEEEEECC-H-----HHHHHHHHhC-cCcccccCCCCCCceeeCCCccccccCCHHHH
Confidence 0 1122234445532 1 2367888877 446777665543220
Q ss_pred ----CCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 128 ----IEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 128 ----~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
..++.+|+|++. |+.+..++-|.+++++
T Consensus 344 ~~~gi~~~liR~svGl---E~~~dl~~dl~~al~~ 375 (378)
T TIGR01329 344 EERGLPEDLVRLSVGI---EDVDDLISDLDIAFVT 375 (378)
T ss_pred HhcCCCCCeEEEEecc---CCHHHHHHHHHHHHHh
Confidence 125799999997 5667777777777664
No 306
>PRK07050 cystathionine beta-lyase; Provisional
Probab=95.01 E-value=1.3 Score=34.65 Aligned_cols=140 Identities=14% Similarity=0.095 Sum_probs=74.6
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCc-c
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIE-C 79 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~-~ 79 (163)
-.+.+.|++++.++++.+.++..... .+.+++....+...+++- . ...+...++...+.+.|+++ ++. +
T Consensus 216 ~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~lr~l~tl---~----~Rl~~~~~~a~~la~~L~~~p~v~~v 288 (394)
T PRK07050 216 GSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRGLPSL---Q----VRLAAHDRSALEVAEWLKARPEIATV 288 (394)
T ss_pred CCCeeEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCcH---H----HHHHHHHHHHHHHHHHHHhCCCccEE
Confidence 35678999888678888888777664 345666555555555542 2 22333344455677777766 322 2
Q ss_pred cc-----------------CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCC-----------C----
Q 042816 80 AK-----------------SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCH-----------C---- 127 (163)
Q Consensus 80 ~~-----------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~-----------~---- 127 (163)
.. ..|+++ -+.+.... +..+..+|.+.|.. .++.+.=|.... .
T Consensus 289 ~~p~l~~~p~~~~~~~~~~~~g~~~-s~~l~~~~---~~~~~~~~~~~l~~-~~~~~s~G~~~sl~~~~~~~~~~~~~~~ 363 (394)
T PRK07050 289 LHPALPDCPGHAFWMRDFTGAGGLF-SVVFDERY---SPAQVDAFVEALEL-FAIGWSWGGACSLAMPYDVASMRTAKWP 363 (394)
T ss_pred ECCCCCCCccHHHHHHhCCCCceEE-EEEECCCC---CHHHHHHHHHcCCC-CeeccccCCccceEeeCcccccchhhcC
Confidence 11 123333 23443210 11245666665533 444322121111 0
Q ss_pred CCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 128 IEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 128 ~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
...+-+|+|++- |+.+..++-|.+++.+
T Consensus 364 ~~~~~iR~svGl---E~~~dl~~dl~~al~~ 391 (394)
T PRK07050 364 HRGTLVRLYIGL---EDEADLIADLEQALEA 391 (394)
T ss_pred CCCCEEEEEeCc---CCHHHHHHHHHHHHHH
Confidence 113689999997 5566666666666654
No 307
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=94.95 E-value=1.4 Score=34.53 Aligned_cols=64 Identities=5% Similarity=-0.074 Sum_probs=41.7
Q ss_pred CceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
.+++.|++++.++++.+.+...... ..++++....+..-|+.- .-..+...++...+.+.|+++
T Consensus 205 ~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~Tl-------~lR~~~~~~~a~~~a~~L~~~ 270 (388)
T PRK08861 205 SDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLRGIRTL-------GARMRVHEESAQQILAYLQTQ 270 (388)
T ss_pred CcceeEEEEecHHHHHHHHHHHHhccCCCCChHHHHHHHhcCCCH-------HHHHHHHHHHHHHHHHHHHhC
Confidence 4578999988556777777766654 345666666666666653 222333455677788888877
No 308
>PLN02651 cysteine desulfurase
Probab=94.83 E-value=0.29 Score=37.64 Aligned_cols=124 Identities=18% Similarity=0.211 Sum_probs=71.5
Q ss_pred eeEEEEEecCHHHHHHHHHhh---------cccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh-c-
Q 042816 7 FRISVIYSYNNSVLAAAKKLA---------RFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ-L- 75 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~~---------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~- 75 (163)
..+|++++ +++..+.+.... ...+++.....++...++-- .+..+..+++.++..+++.+.|++ .
T Consensus 205 ~G~g~l~v-~~~~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~---~~~~~~i~~~~~~l~~~l~~~l~~~~~ 280 (364)
T PLN02651 205 KGVGALYV-RRRPRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACELA---MKEMDYDEKHMKALRERLLNGLRAKLG 280 (364)
T ss_pred CceEEEEE-cCCCCCCCCccccCCCccCCccCCCccHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 45788888 554333221111 12245555555555555432 233467778888888888888875 4
Q ss_pred CCccccCCc-----eeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-----------------CCceE
Q 042816 76 GIECAKSNG-----GFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI-----------------EPGWF 133 (163)
Q Consensus 76 g~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-----------------~~~~i 133 (163)
|+++..|.. .-.+-+.++. .+..++...| + . |.+..|+.+... ..+.+
T Consensus 281 ~~~i~~~~~~~~~~~~i~~~~~~~-------~~~~~~~~~L-~-~-i~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~v 350 (364)
T PLN02651 281 GVRVNGPRDPEKRYPGTLNLSFAY-------VEGESLLMGL-K-E-VAVSSGSACTSASLEPSYVLRALGVPEEMAHGSL 350 (364)
T ss_pred CEEEECCCCcccCcCCEEEEEeCC-------CCHHHHHHHh-C-C-EEEEchhhcCCCCCCcCHHHHHcCCChHHhCceE
Confidence 676665411 1123334443 2667888877 3 3 999888755322 14799
Q ss_pred EEEEecC-ChhH
Q 042816 134 SFSFTLL-TEKD 144 (163)
Q Consensus 134 Ri~~~~~-~~~~ 144 (163)
|+|++.- ++++
T Consensus 351 R~S~~~~~t~~d 362 (364)
T PLN02651 351 RLGVGRFTTEEE 362 (364)
T ss_pred EEEcCCCCCHHH
Confidence 9999853 4344
No 309
>PLN02590 probable tyrosine decarboxylase
Probab=94.25 E-value=1.2 Score=36.49 Aligned_cols=107 Identities=11% Similarity=0.026 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc-CCcccc-CCceeEEEeecCCcccCC-ChhhHHHHHHHHHHhcCeEEcCCCCCCCCC
Q 042816 53 FININRERLRRLYVKFVAGLRQL-GIECAK-SNGGFYCWADMSGLISSY-SEKGELELWDKLLNVAKVNVTPGSSCHCIE 129 (163)
Q Consensus 53 ~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~-~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~ 129 (163)
-+++..+..-+..+++.+.+++. ++++.. |.-+..+|--.|+..... ...-...+.+.+.++..+.+.+... . +
T Consensus 425 G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l~iVcFr~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~t~~-~--g 501 (539)
T PLN02590 425 NLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPVDGDEDQCNERNRELLAAVNSTGKIFISHTAL-S--G 501 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCEEEEeeEE-C--C
Confidence 34666666677788899999887 777654 455444432223211000 0012356677776645555555432 2 3
Q ss_pred CceEEEEEec--CChhHHHHHHHHHHHHHHHhhhc
Q 042816 130 PGWFSFSFTL--LTEKDIHVVMERIRRISQTCKSH 162 (163)
Q Consensus 130 ~~~iRi~~~~--~~~~~l~~~~~~l~~~~~~~~~~ 162 (163)
.-++|+++.. .++++++.+++.|.+...++.++
T Consensus 502 ~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~~~~~ 536 (539)
T PLN02590 502 KFVLRFAVGAPLTEEKHVTEAWQIIQKHASKFTRN 536 (539)
T ss_pred EEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 5799999975 26788999999999888777654
No 310
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=94.03 E-value=0.025 Score=44.48 Aligned_cols=107 Identities=21% Similarity=0.156 Sum_probs=61.8
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAK 81 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~ 81 (163)
+|.+|+|+||++++++.+...... ....+++.+.|.++...+..+. +.++ ++.+ .+.++..|... .
T Consensus 205 l~g~G~~lGg~v~~~~~~~~~~~~-~~~~~~~~~~q~a~~~~~~~~~--~~~~------~~~~----~~~~~~~G~~~-~ 270 (418)
T TIGR01326 205 IGGHGTAIGGVIVDGGKFDWANGR-FPLFTTPDPSYHGLVFTETFGN--PAFI------VKAR----VQLLRDLGAAL-S 270 (418)
T ss_pred ccCCccceEEEEEecccccccccc-cccccCCCCccccchhhhhhch--hhHH------HHHH----HHHHHhcCCCC-C
Confidence 688999999999933344332211 2235677888887665543221 1222 1111 34445557777 4
Q ss_pred CCceeEEEeecCCcc---cCCChhhHHHHHHHHHHhcCeE--EcCCC
Q 042816 82 SNGGFYCWADMSGLI---SSYSEKGELELWDKLLNVAKVN--VTPGS 123 (163)
Q Consensus 82 ~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~gi~--v~pg~ 123 (163)
|.++++++..+.... ...+ .++..++++|.++.+|. ..||.
T Consensus 271 p~~a~~~~~~l~tl~~R~~~~~-~~a~~la~~L~~~~~V~~V~yP~l 316 (418)
T TIGR01326 271 PFNAFLLLQGLETLSLRMERHV-ENALKVAEFLEAHPKVAWVNYPGL 316 (418)
T ss_pred HHHHHHHHCCcccHHHHHHHHH-HHHHHHHHHHHhCCCccEEECCCC
Confidence 788888877765321 0111 26788999998866764 34553
No 311
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=93.94 E-value=2.4 Score=33.00 Aligned_cols=140 Identities=11% Similarity=0.064 Sum_probs=82.0
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--------------ccCCChHHHHHHHHhcCChHHHHH--HHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--------------FSSVSAPSQNLLVSMLSDTKFVQK--FININRERLRRLY 65 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--------------~~~~s~~~q~~~~~~l~~~~~~~~--~~~~~~~~~~~~~ 65 (163)
+|-||+ +.++. ++++++....... +.+++.+.-.++...|+.-. ++ =++.+.+..+++.
T Consensus 200 lgP~Gl--tvviv-s~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~--~e~GGl~~~~~r~~~ka 274 (364)
T PRK12462 200 LGPAGV--TVAII-RRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIR--DEIGGVHAMRDINARKA 274 (364)
T ss_pred CCCCce--EEEEE-CHHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHH--HhccCHHHHHHHHHHHH
Confidence 565554 67777 7776655432111 12344444455555543210 11 2567778888899
Q ss_pred HHHHHHhhhc-CCccc----cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-
Q 042816 66 VKFVAGLRQL-GIECA----KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL- 139 (163)
Q Consensus 66 ~~l~~~l~~~-g~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~- 139 (163)
+.+++.+++. |+... ...+-+.+.++++.. ..+.+|.+.+.+ +|+....|..- -+.+|+|+=.
T Consensus 275 ~~ly~~id~~~~~~~~~~~~~~RS~mnv~f~~~~~------~l~~~f~~~a~~-~gl~~lkGhr~----vgg~Ras~yna 343 (364)
T PRK12462 275 AMLYATLDALNEVIDCHAHRAARSTMNVAFRFRQP------RLDTLFKEQSTE-AGFCGLSGHRS----IGGIRASLYNA 343 (364)
T ss_pred HHHHHHHHhCCCcccCCCChhhcCcceEEEEcCCH------HHHHHHHHHHHH-CCCccccCCcc----cCceEEEcCCC
Confidence 9999999887 43322 123444555565542 256778877654 89998776543 3459999843
Q ss_pred CChhHHHHHHHHHHHHHH
Q 042816 140 LTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 140 ~~~~~l~~~~~~l~~~~~ 157 (163)
.+.|.++..++-++++-+
T Consensus 344 ~~~e~v~~L~~fm~~f~~ 361 (364)
T PRK12462 344 VSEQAVSRLCAFLKDFAI 361 (364)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 476666666555555443
No 312
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=93.82 E-value=0.82 Score=39.77 Aligned_cols=86 Identities=13% Similarity=0.115 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCccccCCceeE--EEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCC
Q 042816 52 KFININRERLRRLYVKFVAGLRQLGIECAKSNGGFY--CWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIE 129 (163)
Q Consensus 52 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~ 129 (163)
+=+++.-+....+..++.+.|.+.|+++..+ .|| +.++++. .+..++.+.+++ +||.+... .
T Consensus 338 ~GL~~iA~~~~~~a~~l~~~L~~~G~~~~~~--~fF~~~~v~~~~-------~~~~~i~~~~~~-~gi~l~~~------~ 401 (939)
T TIGR00461 338 KGLKNIARRIHSLTSILANGLENDPHELINK--TWFDTLTVKVGN-------GISSELLKAAEE-FNINLRAV------D 401 (939)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccCC--CccceEEEEeCC-------CCHHHHHHHHHH-CCCeeeec------C
Confidence 4467777778888889999999989887755 444 3344532 156888888877 89997651 2
Q ss_pred CceEEEEEec-CChhHHHHHHHHHH
Q 042816 130 PGWFSFSFTL-LTEKDIHVVMERIR 153 (163)
Q Consensus 130 ~~~iRi~~~~-~~~~~l~~~~~~l~ 153 (163)
++.+++|+.. .+.++++..++.+.
T Consensus 402 ~~~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 402 TTTVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred CCEEEEEeecCCCHHHHHHHHHHhc
Confidence 4689999864 37778888888774
No 313
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=93.79 E-value=0.93 Score=35.14 Aligned_cols=126 Identities=11% Similarity=0.105 Sum_probs=70.4
Q ss_pred ceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCce
Q 042816 6 GFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSNGG 85 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g 85 (163)
|+-+|.++. ++++... .....++.++++-.++.+.|+--+. +...++.++. +. .+..-.+.-.+.. |
T Consensus 235 G~P~~a~~~-~~~~~~~--~~~~T~~gnp~~~aaa~a~l~~i~~-~~l~~~~~~~-------l~-~l~~~~v~~vRG~-G 301 (364)
T PRK04013 235 GVPVSLTLT-NFDVERG--KHGSTFGGNPLACKAVAVTLRILRR-ERLVEKAGEK-------FI-EIKGERVVTTRGR-G 301 (364)
T ss_pred CceeEEEEe-cccccCC--CcCCCCCcCHHHHHHHHHHHHHHHh-ccHHHHHHHH-------HH-HhccCcceeeeeC-c
Confidence 677888888 5554110 0111235666666555555432110 1222333322 11 1211111222223 5
Q ss_pred eEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHHHh
Q 042816 86 FYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~ 159 (163)
+++-+++.. ....+.+.+++ +|+.+.+. +.+.+|+.... ++++++++++++|.+++.+.
T Consensus 302 l~~gve~~~--------~~~~i~~~~~~-~Gll~~~~------g~~vlr~~Ppl~it~~~i~~~~~~l~~~l~~~ 361 (364)
T PRK04013 302 LMIGIVLKK--------PVGKYVEELQN-RGYLVHTA------GQRVIRLLPPLIISKDTMEEAKSAIEGVINDI 361 (364)
T ss_pred EEEEEEeCC--------cHHHHHHHHHh-CCcEEeeC------CCCEEEEeCCcccCHHHHHHHHHHHHHHHHHH
Confidence 666667753 34567777776 89998753 14678998753 48899999999999988753
No 314
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=93.75 E-value=2.6 Score=32.90 Aligned_cols=66 Identities=14% Similarity=-0.018 Sum_probs=37.5
Q ss_pred CCCcee-EEEEEecCHHHHHHHHHhhccc--CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 3 SLPGFR-ISVIYSYNNSVLAAAKKLARFS--SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 3 ~~~G~R-iG~~i~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
+.+|-. .|++++.++++.+.+....... .++++....+..-++.- +. ..+...++...+.+.|+++
T Consensus 201 ~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p~~a~l~l~~l~tL---~~----R~~~~~~na~~la~~L~~~ 269 (385)
T PRK08574 201 AGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLVLRGLKTL---EV----RFERQCRNAMAIAEFLSEH 269 (385)
T ss_pred cCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcH---HH----HHHHHHHHHHHHHHHHHcC
Confidence 445544 4766665788888887666533 34444444444444432 33 3333344667777788776
No 315
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=93.67 E-value=2.4 Score=33.73 Aligned_cols=102 Identities=7% Similarity=-0.053 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc-CCccccC--CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCC-CCCC
Q 042816 54 ININRERLRRLYVKFVAGLRQL-GIECAKS--NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSC-HCIE 129 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f-~~~~ 129 (163)
+++..+...+..+++.+.|++. ++++..| ..+...| .++..- ..+ .+..++.+.|.+ .|+.+.....- ...+
T Consensus 324 ~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~~iV~F-r~~~~~-~~~-~~~~~l~~~L~~-~G~~~~~~~~p~~~~~ 399 (431)
T TIGR01788 324 YRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIPLVAF-KLKDDA-DPG-YTLYDLSHRLRE-RGWIVPAYTLPKNAED 399 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCceEEEE-EeCCCC-CCC-cCHHHHHHHHHH-CCCcccCCCCCCccCC
Confidence 3566677777888899999888 6777654 5555443 433210 001 256788887765 89875332111 1123
Q ss_pred CceEEEEEec-CChhHHHHHHHHHHHHHHHh
Q 042816 130 PGWFSFSFTL-LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 130 ~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~ 159 (163)
..++|+++.. ..++.++..++-|.+++..+
T Consensus 400 ~~~lR~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (431)
T TIGR01788 400 IVVMRIVVREGFSRDLAELLIEDIEAALAYL 430 (431)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 4689999963 47788999999999888765
No 316
>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=93.33 E-value=3.1 Score=32.66 Aligned_cols=140 Identities=11% Similarity=0.085 Sum_probs=73.8
Q ss_pred CceeEEEEEecCHHHHHHHHHhhcc-----cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CC
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLARF-----SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL--GI 77 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~~-----~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g~ 77 (163)
.|+-+|..++ ++++.+.+.--..+ ++-++++-.++...|+.-.. .++.++..+.-+.-++.+.+.+.+. .+
T Consensus 279 gGlPigA~~v-~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~-~e~~k~vs~~~k~L~~~l~e~~~~~~~~i 356 (433)
T KOG1401|consen 279 GGLPIGATGV-RDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKD-PETLKNVSKIGKELRKLLDEYLKKTPNSI 356 (433)
T ss_pred CCceeEEEee-hHHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHhccCCCce
Confidence 4788999999 88998888655441 45677776666655542111 2445556666566666666766654 22
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHh-------cCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNV-------AKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVME 150 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~ 150 (163)
... -..|+++-+.+.....+. .|.......|... .|+.+.|- --+++.. .+|.++..++
T Consensus 357 ~g~-~grgl~ig~~~~~p~~~~--~d~~~~~~ll~~~~~~~~~~~gv~i~P~----------~~l~~~~-~~E~i~~~l~ 422 (433)
T KOG1401|consen 357 CGG-VGRGLVIGFEFEGPVYKF--ADAAREQGLLILTLGKGLLEEGVRIAPI----------YLLTVEH-TPEVIQRLLT 422 (433)
T ss_pred eee-eeeEEEEEEEEeechhhh--hhhhhhhhHHHHHHhcccccceEEEecc----------ccccccC-cHHHHHHHHH
Confidence 222 223444433332211010 1222222222221 23333330 0112222 4788899999
Q ss_pred HHHHHHHHhh
Q 042816 151 RIRRISQTCK 160 (163)
Q Consensus 151 ~l~~~~~~~~ 160 (163)
++.+++.++.
T Consensus 423 i~~~~l~~~~ 432 (433)
T KOG1401|consen 423 ILEKVLSALN 432 (433)
T ss_pred HHHHHHHHhc
Confidence 9988887654
No 317
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=92.67 E-value=4.2 Score=32.49 Aligned_cols=135 Identities=12% Similarity=0.124 Sum_probs=69.8
Q ss_pred EEEEEecCHHHHHHHHHh--hcc-----cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh----c-C
Q 042816 9 ISVIYSYNNSVLAAAKKL--ARF-----SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ----L-G 76 (163)
Q Consensus 9 iG~~i~~~~~~~~~~~~~--~~~-----~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~-g 76 (163)
+|-+++ .+++.+.+..- ..+ ++.++++-+++.+-|+ .+++ +.+.+..++.-.++.+.|++ + .
T Consensus 293 l~a~l~-~~~I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~---i~e~--e~l~~~~~~~~~~l~~~L~~~l~~~p~ 366 (449)
T COG0161 293 LSAVLT-SDRIYEAFSDGDAGAFMHGHTYSGNPLACAAALANLD---ILEE--EDLLERVAEIGAYLQAGLQAALADHPL 366 (449)
T ss_pred hHhHhh-hHHHHHHHhcccCCeeccCCccccCHHHHHHHHHHHH---HHHh--cCHHHHHHHHHHHHHHHHHHhcccCCc
Confidence 344555 67788888764 222 2445555443333332 1110 22233333344444444444 2 1
Q ss_pred CccccCCceeEEEeecCCcccCCC---hhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec---CChhHHHHHHH
Q 042816 77 IECAKSNGGFYCWADMSGLISSYS---EKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL---LTEKDIHVVME 150 (163)
Q Consensus 77 ~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~---~~~~~l~~~~~ 150 (163)
+.-.+ .-|+..-+++........ ..-...+.+.+.+ +|+.++|. + + .+-+++ ++++++++.++
T Consensus 367 VgdVR-~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e-~Gl~iRp~---g---~---~i~~~PPliit~~eid~l~~ 435 (449)
T COG0161 367 VGDVR-GLGLIGAIELVADKATKTPFEARVGARVRAAALE-RGLLIRPL---G---D---VIYLMPPLIITREEIDELVD 435 (449)
T ss_pred EEEee-ccceEEEEEEecccccccchhhhHHHHHHHHHHH-CCeEEeec---C---C---EEEEcCCccCCHHHHHHHHH
Confidence 21122 335555556544221110 1124566666666 99999995 2 1 333333 48899999999
Q ss_pred HHHHHHHHhh
Q 042816 151 RIRRISQTCK 160 (163)
Q Consensus 151 ~l~~~~~~~~ 160 (163)
++.+.+++..
T Consensus 436 ~l~~al~~~~ 445 (449)
T COG0161 436 ALREALDETL 445 (449)
T ss_pred HHHHHHHHHH
Confidence 9999988654
No 318
>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.44 E-value=1 Score=35.12 Aligned_cols=103 Identities=20% Similarity=0.176 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhc-CCccccCCceeEEEeecCCcccCCC--hhhHHHHHHHHHHhcCeEEcCCCCCC----C
Q 042816 55 NINRERLRRLYVKFVAGLRQL-GIECAKSNGGFYCWADMSGLISSYS--EKGELELWDKLLNVAKVNVTPGSSCH----C 127 (163)
Q Consensus 55 ~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~gi~v~pg~~f~----~ 127 (163)
..+.+.++.....+.+.|+.. ++.+....-+..+.+.+....+... ..--+++++..+.+ ++.++....-. .
T Consensus 355 p~~~~~L~~k~~~~H~~l~~~s~~~v~~~~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~-~~ll~~a~~~~~~e~~ 433 (467)
T KOG1358|consen 355 PEIVQPLRAKVAKFHAALSSNSGFIVSGSPESPIIHLQLERSYGSREKEEKLLEEIVDKCIAE-GVLLTRAKYLEKLERC 433 (467)
T ss_pred cchhhhhhccccccchhhhcCCceEEecCcCCceeeeeecccccchHHHHHHHHHHHHHHHhh-cceehhhhhhhhcccC
Confidence 445666677777888888887 6777765555556666654332211 11234666666664 88877543221 1
Q ss_pred CCCceEEEEEec-CChhHHHHHHHHHHHHHHH
Q 042816 128 IEPGWFSFSFTL-LTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 128 ~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~ 158 (163)
+-+..+||++.. +++|+++++.+.|+++...
T Consensus 434 ~~~pSiri~~~a~~seeel~ra~~~ik~~~~~ 465 (467)
T KOG1358|consen 434 PIPPSIRICVSAGMSEEELERAAELIKEVASA 465 (467)
T ss_pred CCCCcEEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 226799999975 5889999999999887654
No 319
>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]
Probab=92.12 E-value=4.8 Score=31.58 Aligned_cols=138 Identities=13% Similarity=0.097 Sum_probs=76.6
Q ss_pred CceeEEEEEecCHHHHHHHHHhhc-c--cCCChHHHHHHHHhcCChHH--HHHHHHHHHHHHHHHHHHHHHHhhhc-CCc
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLAR-F--SSVSAPSQNLLVSMLSDTKF--VQKFININRERLRRLYVKFVAGLRQL-GIE 78 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~-~--~~~s~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~ 78 (163)
.|+-+|.++. .+++.+-+.+... + ++.++++-.+..++|+--+. +.+.-...-+++.++...+.+ ++ -+-
T Consensus 285 nG~Pl~AVvt-t~EIa~v~~~~~~~fnTyggnP~a~avg~aVL~Vikee~LqE~aa~vG~yl~~~l~~l~d---~h~iIG 360 (442)
T KOG1404|consen 285 NGFPLGAVVT-TPEIADVLNQKSSHFNTYGGNPVACAVGLAVLKVIKEENLQENAAEVGSYLLEKLAALKD---KHPIIG 360 (442)
T ss_pred CCCcceeeec-CHHHHHHHHhccccccccCCCchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh---cCCcee
Confidence 3688999999 9999999998885 2 45677776666666653210 123333333333333332222 22 111
Q ss_pred cccCCceeEEEeecCCcc-c--CCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLI-S--SYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERI 152 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~-~--~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l 152 (163)
-.+ --|+++=+++-..- . .+.......+.+.+.+ +|+.|--|..++ +.+||+-.- ++.++++-+++..
T Consensus 361 dVR-G~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~cke-~Gvlvg~g~i~G----~vfriaPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 361 DVR-GRGLMLGVELVSDKSEPKPPATAEGAVIGEQCKE-LGVLVGKGGIHG----NVFRIAPPLCITKEDIDFAVEYF 432 (442)
T ss_pred ecc-cceeEEEEEEecccCCCCCcchHHHHHHHHHHHH-hCeeeecccccc----eEEEecCCeeccHHHHHHHHHHH
Confidence 122 22444444442211 0 1111234566666765 999996666555 388998743 4788887666655
No 320
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=92.05 E-value=4.7 Score=31.33 Aligned_cols=25 Identities=4% Similarity=0.106 Sum_probs=18.9
Q ss_pred CCCceeEEEEEecCHHHHHHHHHhh
Q 042816 3 SLPGFRISVIYSYNNSVLAAAKKLA 27 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~~~~~~~ 27 (163)
.+++.+.|+++..++++.+.++...
T Consensus 183 ~l~~g~GG~v~~~~~~~~~~~~~~~ 207 (379)
T PRK11658 183 NITCAEGGLVVTDDDELADRLRSLK 207 (379)
T ss_pred cCcccCceEEEECCHHHHHHHHHHH
Confidence 4677789999986688888776644
No 321
>PRK05367 glycine dehydrogenase; Provisional
Probab=91.75 E-value=3.1 Score=36.54 Aligned_cols=83 Identities=22% Similarity=0.387 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCccccCCceeE--EEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCc
Q 042816 54 ININRERLRRLYVKFVAGLRQLGIECAKSNGGFY--CWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPG 131 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~ 131 (163)
+++..++...+..++.+.|+..|+++..+ .+| +.++++. +..++.+.|++ +||.+.. .. ++
T Consensus 352 l~~Ia~~~~~la~~l~~~L~~~G~~~~~~--~~f~~~~~~~~~--------~~~~i~~~l~~-~gi~~~~---~~---~~ 414 (954)
T PRK05367 352 LKAIARRVHRLAAILAAGLRALGLEVVHD--SFFDTLTVEVGG--------DAAAVLARALA-AGINLRR---VD---DD 414 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccCCC--CCCCeEEEeCCC--------CHHHHHHHHHH-CCceecc---cc---CC
Confidence 56777888888888999997778776533 222 2233332 57889999987 8999832 11 46
Q ss_pred eEEEEEec-CChhHHHHHHHHHH
Q 042816 132 WFSFSFTL-LTEKDIHVVMERIR 153 (163)
Q Consensus 132 ~iRi~~~~-~~~~~l~~~~~~l~ 153 (163)
.+|+|+.. .++++++..++.|.
T Consensus 415 ~l~is~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 415 HVGISLDETTTREDLAALLAVFG 437 (954)
T ss_pred EEEEEecccCCHHHHHHHHHHHc
Confidence 79999964 37788888888886
No 322
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=91.40 E-value=8.2 Score=33.90 Aligned_cols=103 Identities=7% Similarity=-0.031 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCccccC-CceeE---EEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCC
Q 042816 54 ININRERLRRLYVKFVAGLRQLGIECAKS-NGGFY---CWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIE 129 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~g~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~ 129 (163)
+++.-+.--.+.+++.+.|++ ++++.-+ ..+.+ +.++++..-...+ .+..++.+.|++ +|+.-.. ..|...+
T Consensus 764 L~~~a~~ailnAnYl~~rL~~-~~~~l~~~~~~~~~hEfv~~~~~~~~~~g-~~~~dIakrL~d-~G~hapt-~~~pv~g 839 (939)
T TIGR00461 764 LPKASVVAILNANYMATRLKD-HYPILFVGTLKHVAHECILDLRPLKAKTG-IEAIDVAKRLQD-YGFHAPT-LSFPVPG 839 (939)
T ss_pred HHHHHHHHHHHHHHHHHHhhc-cCcccccCCCCceeEEEEEeccchhhhcC-CCHHHHHHHHHh-CCeeccc-cCCccCC
Confidence 566667777788999999987 4444433 12221 3346653110111 267999999997 8998443 3354433
Q ss_pred CceEEEEEecCChhHHHHHHHHHHHHHHHhhh
Q 042816 130 PGWFSFSFTLLTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 130 ~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
.=.++.+-+. +.++++..++.+.++-++...
T Consensus 840 ~lmiepTE~e-skeelD~f~~al~~I~~e~~~ 870 (939)
T TIGR00461 840 TLMVEPTESE-SLEELDRFCDAMIAIKEEINA 870 (939)
T ss_pred eEEEEeeccC-CHHHHHHHHHHHHHHHHHHHH
Confidence 2355566665 888999999988877766554
No 323
>PRK05367 glycine dehydrogenase; Provisional
Probab=91.40 E-value=6.1 Score=34.83 Aligned_cols=103 Identities=13% Similarity=0.084 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc-CCccccCCceeE--EEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCC
Q 042816 54 ININRERLRRLYVKFVAGLRQL-GIECAKSNGGFY--CWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEP 130 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~ 130 (163)
+++..+.--.+.+++.+.|++. .+.+..|.+..+ +.++++..-...+ .+..++.+.|.+ +|+.... ..|.. +
T Consensus 772 lr~~a~~~~~~A~Yl~~~L~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~g-~~~~di~krL~d-~G~~~~t-~~~pv--~ 846 (954)
T PRK05367 772 LRQATEVAILNANYIAKRLKDHYPVLYTGANGRVAHECILDLRPLKESTG-ITVDDIAKRLID-YGFHAPT-MSFPV--A 846 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccccCCCCCcccceEEEeecccccCC-CCHHHHHHHHHH-CCCeEee-cCCcc--C
Confidence 4555555557888888888775 444433322110 2233321100001 156889999976 8998654 23443 6
Q ss_pred ceEEEEEec-CChhHHHHHHHHHHHHHHHhhh
Q 042816 131 GWFSFSFTL-LTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 131 ~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
+.+||+... .+.++++..++.+..+..+..+
T Consensus 847 ~~l~i~ptE~~s~~elDr~~~al~~i~~e~~~ 878 (954)
T PRK05367 847 GTLMVEPTESESKAELDRFCDAMIAIRAEIDE 878 (954)
T ss_pred CEEEEEeeecCCHHHHHHHHHHHHHHHHHHHH
Confidence 778888753 3778899999988887776654
No 324
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=91.29 E-value=3.4 Score=36.43 Aligned_cols=83 Identities=18% Similarity=0.174 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCccccC-CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCce
Q 042816 54 ININRERLRRLYVKFVAGLRQLGIECAKS-NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGW 132 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~ 132 (163)
+++..++..++..++.+.|.+.|+++..+ ..+. +.++++ +..++.+.|++ +||.+... + .+.
T Consensus 380 l~~Ia~ri~~la~~l~~~L~~~G~~~~~~~~f~~-vt~~~~---------~~~~v~~~L~~-~gI~l~~~---~---~~~ 442 (993)
T PLN02414 380 LKTIAQRVHGLAGVFAAGLKKLGFQVQSLPFFDT-VKVKCS---------DADAIADAAAK-VGINLRVV---D---ANT 442 (993)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCccCCCCCcCe-EEEecC---------CHHHHHHHHHH-CCCeeEEe---c---CCe
Confidence 46667778888888899898778776543 1121 223443 34788888876 89977532 1 357
Q ss_pred EEEEEec-CChhHHHHHHHHHH
Q 042816 133 FSFSFTL-LTEKDIHVVMERIR 153 (163)
Q Consensus 133 iRi~~~~-~~~~~l~~~~~~l~ 153 (163)
+|+|+.. .++++++..++.|.
T Consensus 443 lrvs~~e~~T~edId~L~~~l~ 464 (993)
T PLN02414 443 VTVSFDETTTLEDVDKLFKVFA 464 (993)
T ss_pred EEEEeeccCCHHHHHHHHHHHc
Confidence 9999965 37788888888875
No 325
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=90.51 E-value=11 Score=32.72 Aligned_cols=139 Identities=13% Similarity=0.046 Sum_probs=74.4
Q ss_pred Cc-eeEEEEEecCHHHHHHHHHh---h---c--ccCCChHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHH----HH
Q 042816 5 PG-FRISVIYSYNNSVLAAAKKL---A---R--FSSVSAPSQNLLVSML---SDTKFVQKFININRERLRRLYV----KF 68 (163)
Q Consensus 5 ~G-~RiG~~i~~~~~~~~~~~~~---~---~--~~~~s~~~q~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~----~l 68 (163)
.| +-+|.+++ ++++.+.+..- . . .++.++++-+++.+.| ++.+. .+...+.-.+..+ .+
T Consensus 658 gG~~Plaa~l~-~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~----~~~l~~~~~~l~~~l~~~l 732 (817)
T PLN02974 658 GGLVPLAATLA-TEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPST----NPNLIPPGSRLRELWDEEL 732 (817)
T ss_pred CCCCccEEEEE-cHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccH----HHHHHHHHHHHHHHHHHHH
Confidence 35 47889999 89999988521 1 1 2456666665554444 44322 1222222222222 23
Q ss_pred HHHhhhc-CCccccCCceeEEEeecCCcccC--CChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhH
Q 042816 69 VAGLRQL-GIECAKSNGGFYCWADMSGLISS--YSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKD 144 (163)
Q Consensus 69 ~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~ 144 (163)
.+.+.++ .+.-.... |+++-+++...-.. ....-...+.+.++.++||.++|. .+.+++.... .++++
T Consensus 733 ~~~l~~~p~V~~VRg~-Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~-------Gnvi~l~pP~~i~~e~ 804 (817)
T PLN02974 733 VRAISSLPNVERVVSL-GTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYARPL-------GNVVYLMCGPTTSPET 804 (817)
T ss_pred HHHHhhCCCeeEEEee-eeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEec-------CCEEEEeCCCCCCHHH
Confidence 2334444 23333333 45555666431100 011124567777772489999873 1467765433 48889
Q ss_pred HHHHHHHHHHHH
Q 042816 145 IHVVMERIRRIS 156 (163)
Q Consensus 145 l~~~~~~l~~~~ 156 (163)
+++.++.+.+.+
T Consensus 805 l~~~~~~l~~~~ 816 (817)
T PLN02974 805 CTRLLRKVYRRL 816 (817)
T ss_pred HHHHHHHHHHHh
Confidence 999999887754
No 326
>PRK09028 cystathionine beta-lyase; Provisional
Probab=90.07 E-value=7.9 Score=30.44 Aligned_cols=65 Identities=9% Similarity=0.058 Sum_probs=43.2
Q ss_pred CCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 3 SLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
|-.++..|+++. ++++.+.+...... .+++++....+..-|+. +....+...++...+.+.|+++
T Consensus 211 Gh~d~~~G~~~~-~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~T-------L~lR~~~~~~na~~la~~L~~~ 277 (394)
T PRK09028 211 GHSDVMLGTATA-NEKHWDQLREHSYLMGQCTSPDDVYLAMRGLRT-------LGVRLAQHEKNALKVANWLATR 277 (394)
T ss_pred CCCCEEEEEEEC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCc-------HHHHHHHHHHHHHHHHHHHhcC
Confidence 445678898877 88887777655443 34566655555555555 2344455566788899999887
No 327
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=89.81 E-value=8.1 Score=30.17 Aligned_cols=122 Identities=12% Similarity=0.156 Sum_probs=78.8
Q ss_pred CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCceeEEEeecCCcc---cCCChhhHHHH
Q 042816 31 SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLI---SSYSEKGELEL 107 (163)
Q Consensus 31 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~ 107 (163)
+.+.-...+++.-|.+.-. ..|++.... ..++|.+.|.+.|+.+..|.||=-++++..+.+ +...+ .+..|
T Consensus 307 gl~GrdmealAvGL~e~~~-~~yl~~Rv~----Qv~YL~~~l~~~GVpi~~paGGHavfvda~~~lphip~eqF-paqal 380 (471)
T COG3033 307 GLAGRDMEALAVGLREGVN-FDYLAHRVA----QVQYLADGLEEAGVPIVQPAGGHAVFVDAGKFLPHIPAEQF-PAQAL 380 (471)
T ss_pred cccchhHHHHHHHHHHhcC-cHHHHHHHH----HHHHHHHHHHhcCCeeEecCCCceEEeehhhhcCCCChhhC-cHHHH
Confidence 3455555566655654321 234443333 467899999999999999999988999876543 33333 67888
Q ss_pred HHHHHHhcCeEEcCCCCC--CCC---------CCceEEEEEec--CChhHHHHHHHHHHHHHHH
Q 042816 108 WDKLLNVAKVNVTPGSSC--HCI---------EPGWFSFSFTL--LTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 108 ~~~l~~~~gi~v~pg~~f--~~~---------~~~~iRi~~~~--~~~~~l~~~~~~l~~~~~~ 158 (163)
+..|.++.||...---.| +.+ .-+-+|+.+.. -+.+.|+-.++.+.++.+.
T Consensus 381 a~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~ 444 (471)
T COG3033 381 ACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKEN 444 (471)
T ss_pred HHHHHHHhCeeeeeeeceecccCCCccccCCCchheeeEeccccccchhHHHHHHHHHHHHHhc
Confidence 888888899997653222 211 12579999864 1446677777776665543
No 328
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=89.57 E-value=7.9 Score=30.29 Aligned_cols=92 Identities=13% Similarity=0.147 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHhhhcCCccccC-CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC---CCceE
Q 042816 58 RERLRRLYVKFVAGLRQLGIECAKS-NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI---EPGWF 133 (163)
Q Consensus 58 ~~~~~~~~~~l~~~l~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~---~~~~i 133 (163)
.+...+|.+.+.+.|.+.|++.... .-+=.+.+++.... .|.. -+++.++.-+|.+.--+.++.. .|+.+
T Consensus 323 q~qV~~Nakala~~l~~~Gy~lvtgGTDnHlvLvDLr~~G-----~dGa-rvE~vle~~~I~~NKNtvpGD~Sal~PgGi 396 (477)
T KOG2467|consen 323 QKQVLKNAKALASALISRGYKLVTGGTDNHLVLVDLRPKG-----VDGA-RVEKVLELCHIALNKNTVPGDKSALSPGGI 396 (477)
T ss_pred HHHHHHHHHHHHHHHHHcCceEecCCccceEEEEeccccC-----CchH-HHHHHHHHhhhhhcCCcCCCCccccCCCce
Confidence 3344557888999999998776532 22333456775432 1333 3334445467776555555432 28899
Q ss_pred EEEEec-----CChhHHHHHHHHHHHH
Q 042816 134 SFSFTL-----LTEKDIHVVMERIRRI 155 (163)
Q Consensus 134 Ri~~~~-----~~~~~l~~~~~~l~~~ 155 (163)
||.... ..++++++..+-|.++
T Consensus 397 RiGtPAmTsRG~~e~df~~v~~fi~~a 423 (477)
T KOG2467|consen 397 RIGTPAMTSRGFGEEDFEKVADFIDRA 423 (477)
T ss_pred eccchhhcccCccHHHHHHHHHHHHHH
Confidence 998643 2445555555555443
No 329
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=89.54 E-value=8.5 Score=30.02 Aligned_cols=64 Identities=9% Similarity=0.093 Sum_probs=37.6
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhcccC--CChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLARFSS--VSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~~~~--~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
-++...|++++ +++..+.+.......+ .++.....+...++. +....+...++...+.+.|+++
T Consensus 201 ~~d~~gG~v~~-~~~~~~~l~~~~~~~G~~l~p~~a~~~~rgl~t-------l~~R~~~~~~~a~~la~~L~~~ 266 (377)
T TIGR01324 201 HSDIMIGTVVA-NARTWDQLREHSYLMGQMVDADDAYTTLRGLRT-------LGVRLKQHQESSLAIAKWLSEQ 266 (377)
T ss_pred CCCceEEEEEe-CHHHHHHHHHHHHHhCCCCCHHHHHHHHhhhhh-------HHHHHHHHHHHHHHHHHHHHhC
Confidence 34578999999 8888777765444333 344333333333332 3333555566666788888776
No 330
>COG3844 Kynureninase [Amino acid transport and metabolism]
Probab=88.70 E-value=9.4 Score=29.42 Aligned_cols=92 Identities=15% Similarity=0.144 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc----CCccccCC----ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCC
Q 042816 54 ININRERLRRLYVKFVAGLRQL----GIECAKSN----GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSC 125 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~----g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f 125 (163)
+...|+.--...+++.+.++.. +++...|. -|-.+....| ....+.+.|.+ +||.. .|
T Consensus 304 i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp---------~~~~V~qaLi~-rGVig----D~ 369 (407)
T COG3844 304 ITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHP---------HGYQVMQALID-RGVIG----DF 369 (407)
T ss_pred HHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecC---------cHHHHHHHHHH-cCccc----cc
Confidence 6778888778888888888775 35554442 2234444444 56888888887 89984 24
Q ss_pred CCCCCceEEEEEec--CChhHHHHHHHHHHHHHHHhhh
Q 042816 126 HCIEPGWFSFSFTL--LTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 126 ~~~~~~~iRi~~~~--~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
.. |+-+|+.+++ .+.+++..+++.|.+++.+...
T Consensus 370 R~--P~vlRfgftPlY~~~~DVw~AV~~L~evL~t~a~ 405 (407)
T COG3844 370 RE--PDVLRFGFTPLYVSFVDVWDAVDALEEVLDTLAW 405 (407)
T ss_pred cC--CCeeeecCccceechhHHHHHHHHHHHHHHhhcc
Confidence 43 7899999986 4778999999999999987653
No 331
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=88.37 E-value=11 Score=29.66 Aligned_cols=133 Identities=16% Similarity=0.170 Sum_probs=68.8
Q ss_pred ceeEEEEEecC-HHHHHHHHHhhccc--CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCc-cc
Q 042816 6 GFRISVIYSYN-NSVLAAAKKLARFS--SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIE-CA 80 (163)
Q Consensus 6 G~RiG~~i~~~-~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~-~~ 80 (163)
..=.|.+++.+ +++.+.+....... .+++.....+..-++.- ....+...++...+.+.|+++ .++ +.
T Consensus 209 dv~~G~vv~~~~~~~~~~l~~~~~~~G~~~~p~da~ll~rgl~Tl-------~~R~~~~~~nA~~lA~~L~~hp~V~~V~ 281 (386)
T PF01053_consen 209 DVMGGAVVVNGSSELYDRLREFRRLLGATLSPFDAWLLLRGLRTL-------PLRMERQNENAEALAEFLEEHPKVKRVY 281 (386)
T ss_dssp SE-EEEEEESSHHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTH-------HHHHHHHHHHHHHHHHHHHTSTTEEEEE
T ss_pred ceeeEEEEECchhhhhhhhcchhhhcCccchHHHHHHHhcCCCcH-------HHHHHHHHHHHHHHHHHHHhCCCCCeEE
Confidence 34478888844 57888877666543 34444444455555542 333444556778889999887 432 33
Q ss_pred cC----------------CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeE-E------------cCCCC--CC---
Q 042816 81 KS----------------NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVN-V------------TPGSS--CH--- 126 (163)
Q Consensus 81 ~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~-v------------~pg~~--f~--- 126 (163)
.| .+|-.+.+++.... .....|.+.| ++. . .|... ..
T Consensus 282 yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~-----~~~~~f~~~l----~l~~~~~SlGg~~SLi~~p~~~~h~~~~~ 352 (386)
T PF01053_consen 282 YPGLPSHPQHELAKRQMSGGGGLLSFELKGGE-----EAARRFLDAL----KLFSIAPSLGGVESLISHPASTSHRSLSP 352 (386)
T ss_dssp ETTSTTSTTHHHHHHHCSSCTSEEEEEESSHH-----HHHHHHHHH-----SSSEESSS-SSSS-EEEETTCTTTTTSCH
T ss_pred EcccccccceeeeeecccccCceeEEEeccch-----hhhHhHHhhh----hhHhhhhhcCCcccccccccchhhccCCh
Confidence 22 22225566776521 1234444433 332 1 12110 00
Q ss_pred ------CCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 127 ------CIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 127 ------~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
...++.+|+|++- |+.+..++-|.++++
T Consensus 353 e~~~~~Gi~~~liRlSvGl---Ed~~dLi~Dl~~AL~ 386 (386)
T PF01053_consen 353 EERAEAGISDGLIRLSVGL---EDPDDLIADLEQALE 386 (386)
T ss_dssp HHHHHTTS-TTEEEEE--S---S-HHHHHHHHHHHHH
T ss_pred hhhhccCCCCCeeEEEecc---CCHHHHHHHHHHhcC
Confidence 0125789999997 566777777777654
No 332
>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]
Probab=88.33 E-value=10 Score=29.31 Aligned_cols=135 Identities=13% Similarity=0.133 Sum_probs=79.2
Q ss_pred eeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc--C----Cc
Q 042816 7 FRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL--G----IE 78 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g----~~ 78 (163)
+-++-+.+ ++++.-.+.--.. .++-|++.-+++.+.|+--. -+++.+.-...-..+...|+++ . ++
T Consensus 283 ~Pvsavl~-~~~im~~~~pgeHgsTyggNpLg~~vaiAalevi~-----eekL~era~~lG~~l~~~L~~l~~~~p~~v~ 356 (427)
T KOG1402|consen 283 YPVSAVLA-DDDIMLNIKPGEHGSTYGGNPLGCAVAIAALEVIV-----EEKLVERAAKLGEILRDQLNKLQKKFPHVVK 356 (427)
T ss_pred eeeEEEEe-cHHHHhccCCCccccccCCChHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccccccchhh
Confidence 34666777 7777665433322 24678888766665554321 1334444444555566666655 1 34
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~ 157 (163)
..+.. |++.-+.+... +.+..++.++|-.+- ++|++.-|-. .+-||+.-.. +++++++++++.|.+.+.
T Consensus 357 ~VRGr-Gl~~ai~i~~~--~~~~~~aw~~cl~lk-~~g~LAkptH------~~IiRfaPPL~I~e~dl~eg~e~i~k~i~ 426 (427)
T KOG1402|consen 357 EVRGR-GLLNAIVINPS--KTSGQDAWDVCLALK-ENGLLAKPTH------GNIIRFAPPLVISEEDLREGIEAIEKTIA 426 (427)
T ss_pred eeecc-ceEEEEEeccc--cccchhHHHHHHccc-ccccccCCCC------CCeEEecCCcccCHHHHHHHHHHHHHHhc
Confidence 44444 44444444321 011136778887654 4899877643 3578888643 588999999999988764
No 333
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=88.10 E-value=12 Score=29.89 Aligned_cols=42 Identities=12% Similarity=-0.029 Sum_probs=29.0
Q ss_pred cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCc
Q 042816 30 SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIE 78 (163)
Q Consensus 30 ~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~ 78 (163)
.++|++....+...|+.- +..+++. .++...+.+.|+++ .++
T Consensus 272 ~~~sp~~a~l~~rgL~Tl---~lR~~r~----~~Na~~la~~L~~~p~V~ 314 (432)
T PRK06702 272 NCMSPFNAYISNIGLETL---HLRMERH----SENALAVAKWLADHERIE 314 (432)
T ss_pred CCCCHHHHHHHHhccCcH---HHHHHHH----HHHHHHHHHHHHhCCCcc
Confidence 467777777788888764 3334444 47888899999887 443
No 334
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=86.30 E-value=14 Score=28.65 Aligned_cols=97 Identities=13% Similarity=0.101 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc-CCccccC-C---ceeEEE-eecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCC-
Q 042816 54 ININRERLRRLYVKFVAGLRQL-GIECAKS-N---GGFYCW-ADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCH- 126 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~-~---~g~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~- 126 (163)
+++..+.-+++.+++.+.|.++ ++.+..+ . .+++++ +.++.. .+ .+..++.+.|.+ +||.+.+.....
T Consensus 257 l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~-~~r~~l~~~L~~-~gI~~~~~~~~~~ 331 (380)
T TIGR03588 257 LDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLDQE---FG-CTRKEVFEALRA-AGIGVQVHYIPVH 331 (380)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEEEEEEEECCc---CC-CCHHHHHHHHHH-CCCCcccCCcccc
Confidence 3555555566677777888776 5554332 1 223332 233320 01 156788888765 899887432110
Q ss_pred ---------CCC---------CceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 127 ---------CIE---------PGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 127 ---------~~~---------~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
... ...+++.+.. .+.++++..++.|+++
T Consensus 332 ~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~~ 379 (380)
T TIGR03588 332 LQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLRKV 379 (380)
T ss_pred cChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHHHHHHHHHHHh
Confidence 000 1456665542 4677888777777665
No 335
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=83.62 E-value=20 Score=28.25 Aligned_cols=144 Identities=17% Similarity=0.213 Sum_probs=72.0
Q ss_pred EEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc-cCCceeE
Q 042816 11 VIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDT--KFVQKFININRERLRRLYVKFVAGLRQLGIECA-KSNGGFY 87 (163)
Q Consensus 11 ~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~-~~~~g~~ 87 (163)
-|.++++..+..+.+.-.---..++.......++.-+ .| ...+.++.+.+..-.+.+.+.-++++-.+. .|..-..
T Consensus 233 i~As~~~~~i~~vs~~YpGRas~sp~ld~~itLl~LG~~g~-~~ll~~r~~~f~~l~erl~~~aee~~e~ll~~p~N~is 311 (389)
T PF05889_consen 233 IMASFDPSGILAVSKEYPGRASASPSLDLFITLLSLGCTGY-GALLKERKASFPYLKERLKKWAEEVGERLLETPRNHIS 311 (389)
T ss_dssp EEEESSHHHHHHHHHTSHSHBTSHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTEEBSSSTT-SSE
T ss_pred EEEecCHHHHHHHHHHhhhhhhcccchHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCee
Confidence 3444577888887765543223334444455555544 12 333333333333333333333333342222 1334444
Q ss_pred EEeecCCcccCCChhhHHHHHHHHHHhcCeE----EcCCCCCCC-----CCCceEEEEE-ecCChhHHHHHHHHHHHHHH
Q 042816 88 CWADMSGLISSYSEKGELELWDKLLNVAKVN----VTPGSSCHC-----IEPGWFSFSF-TLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~----v~pg~~f~~-----~~~~~iRi~~-~~~~~~~l~~~~~~l~~~~~ 157 (163)
+-++++.... ....+...|...|-. .||. |.|+..+.. ..-.|+-++- -..++|+++.++++|.++++
T Consensus 312 ~a~tl~~l~~-~~~k~~~~lgs~Lf~-R~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~AsaiG~~~eevd~~v~rL~k~i~ 389 (389)
T PF05889_consen 312 MAFTLDTLYE-ISQKDGTFLGSMLFK-RGVSGIRVVTPGGKKQTSHSSNYPCPYLTAASAIGMTREEVDYFVKRLDKIIK 389 (389)
T ss_dssp EEEE-TTCCT-CCSSHHHHHHHHHHH-TTEESSEEEETSSCEEETTSS--SSSEEEEEE-TT--HHHHHHHHHHHHHHHH
T ss_pred EEEECccchh-hccchhhhHHHHHHh-CCcccceeeccCCCcccccCCCCchHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 4555553211 111255777777765 6665 444433321 1147888843 33599999999999999874
No 336
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=83.18 E-value=18 Score=27.44 Aligned_cols=97 Identities=9% Similarity=0.009 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh---cCCccccCCceeEEEeecCCc--cc-CCChhhHHHHHHHHHHhcCeEEcCCCCCC
Q 042816 53 FININRERLRRLYVKFVAGLRQ---LGIECAKSNGGFYCWADMSGL--IS-SYSEKGELELWDKLLNVAKVNVTPGSSCH 126 (163)
Q Consensus 53 ~~~~~~~~~~~~~~~l~~~l~~---~g~~~~~~~~g~~~~~~~~~~--~~-~~~~~~~~~~~~~l~~~~gi~v~pg~~f~ 126 (163)
-.++..+....|.+.+.+.|+- +++.+.+-.+.++=|...|+. +. ..-.....+-+..+.+++|+.+.--.
T Consensus 35 ~~~~l~~~~~~Nl~~l~~~l~~~~~~~I~~~R~sS~l~P~~~h~~~~~w~~~~~~~~~~~~~g~~~~~~~irls~Hp--- 111 (303)
T PRK02308 35 REEKLEEIALSNLENLLRILKYNIAHGIGLFRLSSSLIPLATHPELEGWDYIEPFKEELREIGEFIKEHNIRLSFHP--- 111 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEcccCcCCCCCChhhcccCCCCCCHHHHHHHHHHHHHcCCCeeccC---
Confidence 4567777777777777777754 378777766665444444421 11 11112333444445555777543211
Q ss_pred CCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 127 CIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 127 ~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
+.+ +++++.+++..+..++.|...++
T Consensus 112 ---~y~--inL~S~~~ev~e~Si~~L~~~~~ 137 (303)
T PRK02308 112 ---DQF--VVLNSPKPEVVENSIKDLEYHAK 137 (303)
T ss_pred ---hhh--hcCCCCCHHHHHHHHHHHHHHHH
Confidence 111 22233245555666666655444
No 337
>PRK05967 cystathionine beta-lyase; Provisional
Probab=82.52 E-value=22 Score=28.03 Aligned_cols=64 Identities=9% Similarity=0.061 Sum_probs=37.4
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhccc--CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLARFS--SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
-.++..|+++. ++++.+.+....... +.+++....+..-++. +....+...++...+.+.|+++
T Consensus 215 h~d~~~G~v~~-~~~~~~~l~~~~~~~G~~~~p~da~l~~rgl~T-------l~lR~~~~~~na~~lA~~L~~h 280 (395)
T PRK05967 215 HSDILLGTVSA-NEKCWPQLLEAHGTLGLCAGPDDTYQILRGLRT-------MGIRLEHHRKSALEIARWLEGR 280 (395)
T ss_pred CCCeeEEEEEc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHcCccc-------HHHHHHHHHHHHHHHHHHHHhC
Confidence 34678898887 777777665444433 3455543333333333 2333344456677788888887
No 338
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=81.52 E-value=20 Score=27.60 Aligned_cols=107 Identities=14% Similarity=0.143 Sum_probs=56.7
Q ss_pred CceeEEEEEecCHHHHHHHHHhhcc-------------------cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLARF-------------------SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLY 65 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~~-------------------~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 65 (163)
+.---|.+++.++++.+.++.+... +.++.+...++..-|+. ++...+.-+++.
T Consensus 178 ~~geGG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~-------L~~~~~~R~~~a 250 (363)
T PF01041_consen 178 TTGEGGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKR-------LDEIIARRRENA 250 (363)
T ss_dssp -SSS-EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHHHT-------HHHHHHHHHHHH
T ss_pred cCCCCeeEEecHHHHHHHhhhhhccCcCccccccccccccCCcccccHHHHHHHHHHHHHH-------hhhhHHHHHHHH
Confidence 3344689999778888888776542 11233333333333332 333344444567
Q ss_pred HHHHHHhhhc-CCcc-ccCCc----eeE-EEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCC
Q 042816 66 VKFVAGLRQL-GIEC-AKSNG----GFY-CWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGS 123 (163)
Q Consensus 66 ~~l~~~l~~~-g~~~-~~~~~----g~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~ 123 (163)
+.+.+.|.++ ++.. ..+.+ +++ +.+.+++... .+-.++.+.|.+ .||.+.+..
T Consensus 251 ~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~----~~rd~l~~~L~~-~GI~~~~~~ 310 (363)
T PF01041_consen 251 QRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDEAL----ADRDELVEALRA-RGIETRPHY 310 (363)
T ss_dssp HHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCCGC----STHHHHHHHHHH-TTBEEBCST
T ss_pred HHHHHHHhcCCCccccccccccccccccccccccccccc----chHHHHHHHHHH-CCCcccccc
Confidence 7777778777 5422 22222 222 2333443100 145788888876 899998755
No 339
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=81.49 E-value=25 Score=28.00 Aligned_cols=28 Identities=18% Similarity=0.424 Sum_probs=21.4
Q ss_pred CceEEEEEecCChhHHHHHHHHHHHHHHHhh
Q 042816 130 PGWFSFSFTLLTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 130 ~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~ 160 (163)
++-+|||++- |+.+..++-|.+++++.+
T Consensus 402 ~~liRlsvGl---Ed~~dL~~Dl~~Al~~~~ 429 (431)
T PRK08248 402 PGLVRLSVGT---EAIDDILDDLRQAIRQSQ 429 (431)
T ss_pred CCeEEEEecc---CCHHHHHHHHHHHHHhhh
Confidence 6789999997 566777777777776544
No 340
>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]
Probab=81.17 E-value=22 Score=27.17 Aligned_cols=140 Identities=13% Similarity=0.149 Sum_probs=74.0
Q ss_pred ceeEEEEEecCHHHHHHHHHhhc--c--cCCChHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 6 GFRISVIYSYNNSVLAAAKKLAR--F--SSVSAPSQNLLVSML---SDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~~--~--~~~s~~~q~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
|.-++.+++ .+++.+++..... + ++-|+.+=++....+ ++... .++-.++-+. ...+...++.- .+
T Consensus 284 GhPVa~Vat-tkeIA~Af~atgv~YFNTyGGnPVsCAv~laVm~v~e~E~L-q~ha~~vG~~----L~~lL~~~k~k-h~ 356 (452)
T KOG1403|consen 284 GHPVAAVAT-TKEIAQAFHATGVEYFNTYGGNPVSCAVGLAVMRVCEDENL-QEHAQQVGEK----LEVLLRRLKQK-HE 356 (452)
T ss_pred CCeeeEEec-cHHHHHHhccccceehhccCCCchhHHHHHHHHHHHhhhhH-HHHHHHHHHH----HHHHHHHHhhh-cc
Confidence 677888888 8999999987544 2 455666655444444 33322 3333333333 22233333221 12
Q ss_pred cc--cCCceeEEEeecCCcc--cCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEE--ecCChhHHHHHHHHH
Q 042816 79 CA--KSNGGFYCWADMSGLI--SSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSF--TLLTEKDIHVVMERI 152 (163)
Q Consensus 79 ~~--~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~--~~~~~~~l~~~~~~l 152 (163)
+. .-..|+|+=+++-+.- +-+..+.+..+...|.+.++|++..- .+..+-+.|-- .. ++++..+.+..|
T Consensus 357 ~IGDvRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaD----GPh~NilKiKPPmCF-neena~e~v~~l 431 (452)
T KOG1403|consen 357 CIGDVRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSAD----GPHRNILKIKPPMCF-NEENADEFVLGL 431 (452)
T ss_pred ceeccccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecC----CCCCceeecCCCccc-ChhhHHHHHHHH
Confidence 21 1245777777775422 23333456667777877778988641 11133444322 12 556666666666
Q ss_pred HHHHH
Q 042816 153 RRISQ 157 (163)
Q Consensus 153 ~~~~~ 157 (163)
.+++.
T Consensus 432 d~iLT 436 (452)
T KOG1403|consen 432 DEILT 436 (452)
T ss_pred HHHHH
Confidence 66553
No 341
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=80.42 E-value=28 Score=27.79 Aligned_cols=32 Identities=19% Similarity=0.300 Sum_probs=26.2
Q ss_pred CceEEEEEec-CChhHHHHHHHHHHHHHHHhhh
Q 042816 130 PGWFSFSFTL-LTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 130 ~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
..++||+++. .+.++++...+.+.+.+..+..
T Consensus 389 ~~~iRis~G~y~t~~di~~~~~~i~~~v~~~~~ 421 (428)
T KOG1549|consen 389 HSSIRISIGRYTTEEDIDYLVDAIKKLVSLLRE 421 (428)
T ss_pred cceeEEeeeeeCcHHHHHHHHHHHHHHHHhccc
Confidence 6799999975 4778899999999988876654
No 342
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=76.74 E-value=20 Score=24.02 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHhcCeEEcC-CCCCC
Q 042816 103 GELELWDKLLNVAKVNVTP-GSSCH 126 (163)
Q Consensus 103 ~~~~~~~~l~~~~gi~v~p-g~~f~ 126 (163)
|..++.+.|.++.|..|.| |..|.
T Consensus 46 D~NeVLkALc~eAGw~Ve~DGTtyr 70 (150)
T PF05687_consen 46 DNNEVLKALCREAGWTVEPDGTTYR 70 (150)
T ss_pred CHHHHHHHHHHhCCEEEccCCCeec
Confidence 6677777788889999987 77765
No 343
>PRK04311 selenocysteine synthase; Provisional
Probab=75.16 E-value=42 Score=27.11 Aligned_cols=141 Identities=20% Similarity=0.193 Sum_probs=76.7
Q ss_pred CceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHH----HHHhcCChH-HH----HHHHHHHHHHHHHHHHHHHHHhh
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNL----LVSMLSDTK-FV----QKFININRERLRRLYVKFVAGLR 73 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~----~~~~l~~~~-~~----~~~~~~~~~~~~~~~~~l~~~l~ 73 (163)
.|-..|++++ .+++++.+.+... ...++.....+ +..++...+ +. -+-+....+...++.+.+.+.|+
T Consensus 296 gGp~~G~i~g-~~~li~~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~ 374 (464)
T PRK04311 296 GGPQAGIIVG-KKELIARLKKHPLKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALK 374 (464)
T ss_pred cCCceEEEEE-cHHHHHHHhhchhHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 3446899999 8899887764222 23333333322 222332110 10 01123334666778888888887
Q ss_pred hc-C----CccccC----Cce------eE-EEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEE
Q 042816 74 QL-G----IECAKS----NGG------FY-CWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSF 137 (163)
Q Consensus 74 ~~-g----~~~~~~----~~g------~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~ 137 (163)
.+ + +++.+. .|| +. .-+.+.. .+ .+..++.+.|.+ ....|.. ...++.+.+.+
T Consensus 375 ~~~~~~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~~----~~-~~~~~l~~~lr~-~~~~i~~-----r~~~~~~~ld~ 443 (464)
T PRK04311 375 AALGAAFAVEVVPSFSQVGGGSLPVDRLPSAAVTLTP----KD-RSLEALAARLRL-LPPPVIG-----RIEDGRLLLDL 443 (464)
T ss_pred hccCCCeeEEEEEccCccCCCCCcCCCCCeEEEEEeC----CC-CCHHHHHHHHhc-CCCCEEE-----EEECCEEEEEe
Confidence 75 1 223221 011 11 1112211 01 267888887754 4433322 12378899999
Q ss_pred ecCChhHHHHHHHHHHHHHH
Q 042816 138 TLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 138 ~~~~~~~l~~~~~~l~~~~~ 157 (163)
.++.+++++..++++.+++.
T Consensus 444 r~~~~~~~~~~~~~~~~~~~ 463 (464)
T PRK04311 444 RTLEEEDEERLAAALLEALN 463 (464)
T ss_pred CcCCHHHHHHHHHHHHHHhh
Confidence 98888999999988887653
No 344
>PF06153 DUF970: Protein of unknown function (DUF970); InterPro: IPR010375 This is a family of uncharacterised bacterial proteins.; PDB: 3M05_A.
Probab=74.65 E-value=7.7 Score=24.67 Aligned_cols=54 Identities=19% Similarity=0.156 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHhcCeEEcCCC---CCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHh
Q 042816 102 KGELELWDKLLNVAKVNVTPGS---SCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 102 ~~~~~~~~~l~~~~gi~v~pg~---~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~ 159 (163)
.|+..+.+.|.+ +|+.++--+ +|-. .+-.-+=++. +++++++.++.|++.+.+.
T Consensus 11 ~Da~~l~~~L~~-~g~~~TkLsstGGFLr--~GNtTlliGv-ede~v~~vl~iIk~~c~~R 67 (109)
T PF06153_consen 11 EDADDLSDALNE-NGFRVTKLSSTGGFLR--EGNTTLLIGV-EDEKVDEVLEIIKENCKKR 67 (109)
T ss_dssp HHHHHHHHHHHH-TT--EEEEEEEETTTT--EEEEEEEEEE-EGGGHHHHHHHHHHHH--E
T ss_pred hhHHHHHHHHHH-CCceEEEEecccceec--cCCEEEEEEe-cHHHHHHHHHHHHHhhcCc
Confidence 488899998887 899986432 2322 3333344444 6799999999999977653
No 345
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=74.01 E-value=46 Score=26.95 Aligned_cols=121 Identities=17% Similarity=0.264 Sum_probs=78.9
Q ss_pred CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCceeEEEeecCCc---ccCCChhhHHHH
Q 042816 31 SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGL---ISSYSEKGELEL 107 (163)
Q Consensus 31 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~ 107 (163)
+.+.--..+++.-|.+.-. .++++.... ..++|.+.|.+.|+.+.. .||--+++|.... +++..+ ....+
T Consensus 305 Glagrd~ea~a~Gl~e~~~-~~yl~~ri~----qv~yl~~~L~~~Gvpi~~-~Gghav~iDa~~~lphip~~~f-pa~al 377 (467)
T TIGR02617 305 GLEGGAMERLAVGLYDGMN-LDWLAYRIN----QVQYLVNGLEEIGVVCQQ-AGGHAAFVDAGKLLPHIPADQF-PAHAL 377 (467)
T ss_pred chhHHHHHHHHhhhhhccc-HHHHHHHHH----HHHHHHHHHHhCCCcEEe-cCccEEEEehhhhCCCCChhhC-cHHHH
Confidence 4566666777766665422 344444433 467888999999998887 8888888876543 333333 67888
Q ss_pred HHHHHHhcCeEEcC-CCCC-CC--C-------CCceEEEEEec--CChhHHHHHHHHHHHHHHH
Q 042816 108 WDKLLNVAKVNVTP-GSSC-HC--I-------EPGWFSFSFTL--LTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 108 ~~~l~~~~gi~v~p-g~~f-~~--~-------~~~~iRi~~~~--~~~~~l~~~~~~l~~~~~~ 158 (163)
+..|..+.||.-.- |+.. +. . .-+.+|+.+.. -+.+.++...+.+..+.++
T Consensus 378 ~~~ly~~~GiR~~e~G~~~~~rd~~~~~~~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~ 441 (467)
T TIGR02617 378 ACELYKVAGIRAVEIGSLLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_pred HHHHHHHcCcceEeecceecccCCCCCccCCCccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence 88888888998443 4321 11 0 13689999864 2567788888888776654
No 346
>PRK06434 cystathionine gamma-lyase; Validated
Probab=73.85 E-value=41 Score=26.38 Aligned_cols=62 Identities=13% Similarity=0.096 Sum_probs=34.8
Q ss_pred eeEEEEEecCHHHHHHHHHhhccc--CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 7 FRISVIYSYNNSVLAAAKKLARFS--SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
.=.|.+++.++++.+.+....... ..+++....+..-|+. ++...+...++...+.+.|+.+
T Consensus 215 ~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~gL~t-------L~~R~~r~~~~a~~~a~~L~~~ 278 (384)
T PRK06434 215 VVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLALRGLKT-------LGLRMEKHNKNGMELARFLRDS 278 (384)
T ss_pred ceEEEEecCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhCCCc-------HHHHHHHHHHHHHHHHHHHHcC
Confidence 346777675667777776554332 3344333333344444 2334444456777788888877
No 347
>PLN02509 cystathionine beta-lyase
Probab=72.93 E-value=49 Score=26.78 Aligned_cols=64 Identities=11% Similarity=0.010 Sum_probs=35.3
Q ss_pred eeEEEEEecCHHHHHHHHHhhccc--CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CC
Q 042816 7 FRISVIYSYNNSVLAAAKKLARFS--SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GI 77 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 77 (163)
.=.|++++.++.+.+.++...... ..+++....+..-| +.+....+...++...+.+.|+++ .+
T Consensus 286 v~gG~v~~~~~~l~~~~~~~~~~~g~~l~p~~A~l~lr~L-------~tL~~R~~r~~~nA~~la~~L~~~p~V 352 (464)
T PLN02509 286 VMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGI-------KTMALRIEKQQENARKIAMYLSSHPRV 352 (464)
T ss_pred cceeEEEeccHHHHHHHHHHHHhcCCCcCHHHHHHHHhhh-------hhHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 447888874555555555443322 23333322222222 334556666677788888888887 44
No 348
>PRK05939 hypothetical protein; Provisional
Probab=72.30 E-value=46 Score=26.20 Aligned_cols=25 Identities=8% Similarity=0.113 Sum_probs=18.7
Q ss_pred CceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 130 PGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 130 ~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
++.+|||++- |+.+..++-|.+++.
T Consensus 371 ~~lvR~svGl---Ed~~dLi~dl~~Al~ 395 (397)
T PRK05939 371 DSLIRVSVGI---EDEADLIADFEQALD 395 (397)
T ss_pred CCeEEEEeCC---CCHHHHHHHHHHHHh
Confidence 5789999997 566667777776664
No 349
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=69.79 E-value=46 Score=25.19 Aligned_cols=143 Identities=15% Similarity=0.214 Sum_probs=78.6
Q ss_pred eeEEEEEecCHHHHHHHHHhhc---------ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-C
Q 042816 7 FRISVIYSYNNSVLAAAKKLAR---------FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-G 76 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~~~---------~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g 76 (163)
--+|.+.. ..+..+.+.+... .+++.....-+++-+-+=+. +.+.+.++.+..+. ...+.+.|.++ |
T Consensus 224 ~PiGvl~~-~eE~ae~V~r~Sg~~~~~KEvellGCT~rGapivTlmASfP~-V~eRVkrWdeEv~k-aR~fv~elEkigg 300 (382)
T COG1103 224 APIGVLAM-SEEWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVTLMASFPH-VVERVKRWDEEVEK-ARWFVAELEKIGG 300 (382)
T ss_pred CCeeEEee-hhHHHHHHHhhcccccccceeeeecccccCchHHHHHhcCHH-HHHHHHHHHHHHHH-HHHHHHHHHHhhh
Confidence 35777777 7777777655541 13443333333332323233 25556666666554 45677778887 4
Q ss_pred Cccc--cCCceeEEEeecCCc--ccCCChhhHHHHHHHHHHhcCeE-EcCCCCCCCCCCceEEEEEecCChhHHHHHHHH
Q 042816 77 IECA--KSNGGFYCWADMSGL--ISSYSEKGELELWDKLLNVAKVN-VTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMER 151 (163)
Q Consensus 77 ~~~~--~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~gi~-v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~ 151 (163)
+.-. +|..-=.+...-|.. +.+.-....--+.+.|-+ .||. |.||. ..++.+|+-.+++|+++..++.
T Consensus 301 ~~qlG~rPk~HdLm~Fetp~f~eIakk~~r~gyFlY~ELK~-RgI~GI~~G~------Tk~~K~svyGl~~Eqve~V~~a 373 (382)
T COG1103 301 VKQLGERPKNHDLMKFETPVFHEIAKKHKRKGYFLYEELKK-RGIHGIQPGQ------TKYFKLSVYGLSWEQVEYVVDA 373 (382)
T ss_pred HHHhCCCCcccceeeecCchHHHHHHhCcCCceeeHHHHHh-cCccccccCc------eeEEEEEeecCCHHHHHHHHHH
Confidence 4332 122211222233321 100000122344555544 6665 44442 6799999977799999999999
Q ss_pred HHHHHHHh
Q 042816 152 IRRISQTC 159 (163)
Q Consensus 152 l~~~~~~~ 159 (163)
++++++++
T Consensus 374 fkeI~eky 381 (382)
T COG1103 374 FKEIAEKY 381 (382)
T ss_pred HHHHHHhc
Confidence 99998875
No 350
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=68.34 E-value=18 Score=28.96 Aligned_cols=29 Identities=14% Similarity=0.314 Sum_probs=22.8
Q ss_pred CceEEEEEecCChhHHHHHHHHHHHHHHHhhh
Q 042816 130 PGWFSFSFTLLTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 130 ~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
++-+|||++- |+.+..++-|.++++..+.
T Consensus 406 ~~liRlSvGl---Ed~~dli~dl~~Al~~~~~ 434 (436)
T PRK07812 406 PGLVRLAVGI---EGIDDILADLEAGFAAAKA 434 (436)
T ss_pred CCeEEEEecc---CCHHHHHHHHHHHHHhhhc
Confidence 5789999997 5677778888888776664
No 351
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=66.59 E-value=65 Score=25.74 Aligned_cols=18 Identities=33% Similarity=0.456 Sum_probs=13.4
Q ss_pred CChhHHHHHHHHHHHHHH
Q 042816 140 LTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 140 ~~~~~l~~~~~~l~~~~~ 157 (163)
.++++++..++.|+++++
T Consensus 418 l~~~~v~~i~~~i~~~~~ 435 (438)
T PRK15407 418 LTEEMLDYVIEKIEEFFG 435 (438)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 366788888888887664
No 352
>PRK07671 cystathionine beta-lyase; Provisional
Probab=64.41 E-value=66 Score=25.05 Aligned_cols=62 Identities=10% Similarity=0.023 Sum_probs=38.1
Q ss_pred eeEEEEEecCHHHHHHHHHhhccc--CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 7 FRISVIYSYNNSVLAAAKKLARFS--SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
.-.|++++.++++++.+...+... ..++.....+..-++. +....+...++...+.+.|+++
T Consensus 203 ~~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~a~l~~~~l~t-------l~~R~~~~~~na~~la~~L~~~ 266 (377)
T PRK07671 203 VVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRGLKT-------LGIRMEEHETNSRAIAEFLNNH 266 (377)
T ss_pred ceeEEEEeCcHHHHHHHHHHHHhhcCCCCHHHHHHHHcCcCh-------HHHHHHHHHHHHHHHHHHHHcC
Confidence 345667775678888888776653 3444433333333332 3445555567888888888876
No 353
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=60.72 E-value=31 Score=27.43 Aligned_cols=27 Identities=7% Similarity=0.197 Sum_probs=20.7
Q ss_pred CceEEEEEecCChhHHHHHHHHHHHHHHHh
Q 042816 130 PGWFSFSFTLLTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 130 ~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~ 159 (163)
++.+|||++- |+.+..++-|.+++.+.
T Consensus 397 ~~liR~svGl---Ed~~dLi~dl~~Al~~~ 423 (425)
T PRK06084 397 RDMVRLSIGI---EHIDDIIADLAQALDAS 423 (425)
T ss_pred CCeEEEEecc---CCHHHHHHHHHHHHHhh
Confidence 5799999997 56677777777777654
No 354
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=59.90 E-value=29 Score=27.65 Aligned_cols=28 Identities=18% Similarity=0.381 Sum_probs=20.7
Q ss_pred CceEEEEEecCChhHHHHHHHHHHHHHHHhh
Q 042816 130 PGWFSFSFTLLTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 130 ~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~ 160 (163)
++-+|||++- |+.+..++-|.+++++.+
T Consensus 402 ~~liRlsvGl---E~~~dli~dl~~Al~~~~ 429 (433)
T PRK08134 402 EGTIRLSIGL---EDADDLIDDLKRALKAAE 429 (433)
T ss_pred CCeEEEEecc---CCHHHHHHHHHHHHHhhh
Confidence 5789999997 566667777777776543
No 355
>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]
Probab=58.35 E-value=90 Score=24.62 Aligned_cols=68 Identities=16% Similarity=0.196 Sum_probs=41.3
Q ss_pred CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecC-ChhHHHHHHHHHHHH
Q 042816 77 IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLL-TEKDIHVVMERIRRI 155 (163)
Q Consensus 77 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~-~~~~l~~~~~~l~~~ 155 (163)
+.-.+..|.|..| ++|..- --..|+.. ++.+||.+-.| + ...||+.-+.+ .+...+..++++.+.
T Consensus 415 ~~~~RGrGTF~a~-d~ps~~------~Rdk~i~~-~~~nGv~~GGC---g---~~siRfRPsLvf~~~Ha~i~l~~~~k~ 480 (484)
T KOG1405|consen 415 INNLRGRGTFIAW-DCPSGS------IRDKLILI-ARLNGVNLGGC---G---DKSIRFRPSLVFRKHHADIFLDIFDKI 480 (484)
T ss_pred hhcccccceEEEE-eCCChH------HHHHHHHH-HHHcCceeccc---c---cceeeeccceeehhhhHHHHHHHHHHH
Confidence 5556666665555 888641 22345554 45588887532 2 46677766542 555677788888877
Q ss_pred HHH
Q 042816 156 SQT 158 (163)
Q Consensus 156 ~~~ 158 (163)
+..
T Consensus 481 l~~ 483 (484)
T KOG1405|consen 481 LAG 483 (484)
T ss_pred hcc
Confidence 653
No 356
>PF03295 Pox_TAA1: Poxvirus trans-activator protein A1 C-terminal; InterPro: IPR004975 Late transcription factor VLTF-2, acts with RNA polymerase to initiate transcription from late gene promoters [].
Probab=57.62 E-value=20 Score=20.13 Aligned_cols=34 Identities=18% Similarity=0.105 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec
Q 042816 103 GELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL 139 (163)
Q Consensus 103 ~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~ 139 (163)
.-.++...|.++.||+ |+.|.....+.+++++.+
T Consensus 28 ~Vi~iIN~lR~keGvY---G~c~~~e~~~~i~isLrs 61 (63)
T PF03295_consen 28 EVINIINELRNKEGVY---GSCYYKENDQSIRISLRS 61 (63)
T ss_pred HHHHHHHHhhhccCce---eEEEEecCCcEEEEEeee
Confidence 4567888888888999 777876667889999864
No 357
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=57.50 E-value=90 Score=24.36 Aligned_cols=26 Identities=12% Similarity=0.222 Sum_probs=19.6
Q ss_pred CceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 130 PGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 130 ~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
++-+|+|++- |+.+..++-|.+++++
T Consensus 353 ~~liR~svGl---E~~~dli~dl~~Al~~ 378 (380)
T PRK06176 353 DGLVRLSVGI---EHEQDLLEDLEQAFAK 378 (380)
T ss_pred cCeEEEEecc---CCHHHHHHHHHHHHhh
Confidence 5789999997 5666777777776654
No 358
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=57.36 E-value=85 Score=24.02 Aligned_cols=96 Identities=11% Similarity=0.043 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhh---cCCccccCCceeEEEeecCCcccC--CChhhHHHHHHHHHHhcCeEEcCCCCCCCC
Q 042816 54 ININRERLRRLYVKFVAGLRQ---LGIECAKSNGGFYCWADMSGLISS--YSEKGELELWDKLLNVAKVNVTPGSSCHCI 128 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~---~g~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~ 128 (163)
+++..+....|.+-+.+.|+- +|+.+.+-.+.++=+...|+.... ....+...-+..+.+++||.++- ..
T Consensus 40 ~~~l~~l~~~Nl~~l~~~L~~n~~~~I~f~RisS~l~P~ash~~~~~~~~~~~~~~l~~iG~~a~~~~iRLS~----Hp- 114 (312)
T TIGR00629 40 KEAVLTLGKANLRDTMKTLHWNIGHGIPFYRFSSSIFPFASHPDVGYDLVTFAQKELREIGELAKTHQHRLTF----HP- 114 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcEEecCccccCcCcCchhhhhHHHHHHHHHHHHHHHHHHcCeEEEE----CC-
Confidence 467777777777777777754 378777766655444444431000 00012222233455567888752 21
Q ss_pred CCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 129 EPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 129 ~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
+.|+-++ +.+++.++..++.|....+
T Consensus 115 -~qfi~Ln--S~~~evv~~Si~~L~~ha~ 140 (312)
T TIGR00629 115 -GQFTQFT--SPRESVVKSAIRDLAYHDE 140 (312)
T ss_pred -CccccCC--CCCHHHHHHHHHHHHHHHH
Confidence 2333333 3367788888888875443
No 359
>PRK02769 histidine decarboxylase; Provisional
Probab=57.07 E-value=93 Score=24.37 Aligned_cols=82 Identities=9% Similarity=0.058 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceE
Q 042816 54 ININRERLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWF 133 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~i 133 (163)
+++..+...+..+++.+.|++.|++.........+.+..|. .++. .|..+.+- ++++
T Consensus 290 ~~~~~~~~~~la~~l~~~L~~~g~~~~~~p~~~~v~f~~~~----------~~~~------~~w~l~~~-------~~~~ 346 (380)
T PRK02769 290 LRQRVQHCLDMAQYAVDRLQANGIPAWRNPNSITVVFPCPS----------ERIW------KKWHLATS-------GNQA 346 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEcCCCceEEEEcCCC----------HHHH------hCeeEccc-------CCEE
Confidence 46777778888889999998888776543333333333331 2221 34444432 2489
Q ss_pred EEEEecC-ChhHHHHHHHHHHHHHHH
Q 042816 134 SFSFTLL-TEKDIHVVMERIRRISQT 158 (163)
Q Consensus 134 Ri~~~~~-~~~~l~~~~~~l~~~~~~ 158 (163)
||++..+ +.+.++..++-|.+....
T Consensus 347 hi~~~~~~~~~~~~~f~~dl~~~~~~ 372 (380)
T PRK02769 347 HIITMPHHNKQQIDSLIDELIFDLKN 372 (380)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHhc
Confidence 9999864 666788888888776653
No 360
>PRK08114 cystathionine beta-lyase; Provisional
Probab=56.14 E-value=1e+02 Score=24.44 Aligned_cols=63 Identities=11% Similarity=0.046 Sum_probs=39.0
Q ss_pred CceeEEEEEecCHHHHHHHHHhhccc--CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLARFS--SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
+.+-.|.++. ++++.+.+....... ..+++....+..-|+.- .-..+...++...+.+.|+++
T Consensus 216 sdv~~G~v~~-~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~TL-------~lR~~~~~~na~~va~~L~~h 280 (395)
T PRK08114 216 SDAMIGTAVA-NARCWEQLRENSYLMGQMVDADTAYMTSRGLRTL-------GVRLRQHEESSLKVAEWLAEH 280 (395)
T ss_pred CcceeEEEEc-CHHHHHHHHHHHHhccCCCCHHHHHHHHcCCCcH-------HHHHHHHHHHHHHHHHHHHcC
Confidence 3467887777 777766666544433 34555555555555553 333445556788888888887
No 361
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=53.84 E-value=50 Score=25.55 Aligned_cols=44 Identities=23% Similarity=0.329 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHhhh
Q 042816 104 ELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 104 ~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
+.+..+.|++ .|+. .+||+++..+.++..+.++.++++.+++..
T Consensus 16 ~~e~l~~li~-aGm~-------------v~RiN~SHg~~e~~~~~i~~iR~a~~~~~~ 59 (348)
T PF00224_consen 16 SVEVLRKLIE-AGMN-------------VARINFSHGTHEEHKEIIENIREAEKELGK 59 (348)
T ss_dssp SHHHHHHHHH-HTEE-------------EEEEETTSS-HHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHH-hccE-------------EEEEeeecCCHHHHHHHHHHHHHHHhccCC
Confidence 3555556776 6665 479999987889999999999998877653
No 362
>COG4050 Uncharacterized protein conserved in archaea [Function unknown]
Probab=53.58 E-value=50 Score=21.37 Aligned_cols=30 Identities=7% Similarity=0.241 Sum_probs=23.8
Q ss_pred eEEEEEecCChhHHHHHHHHHHHHHHHhhhc
Q 042816 132 WFSFSFTLLTEKDIHVVMERIRRISQTCKSH 162 (163)
Q Consensus 132 ~iRi~~~~~~~~~l~~~~~~l~~~~~~~~~~ 162 (163)
-+++-+.. ++|+-...+..|.++++++...
T Consensus 121 iLelkYP~-s~Eea~~~VnkI~~FL~sLe~~ 150 (152)
T COG4050 121 ILELKYPR-SEEEAIDFVNKIANFLKSLEAQ 150 (152)
T ss_pred eEEEeCCC-cHHHHHHHHHHHHHHHHhhhhh
Confidence 35666766 7888899999999999987654
No 363
>PF05932 CesT: Tir chaperone protein (CesT) family; InterPro: IPR010261 This family consists of a number of bacterial sequences, which are highly similar to the Tir chaperone protein in Escherichia coli. In many Gram-negative bacteria, a key indicator of pathogenic potential is the possession of a specialised type III secretion system, which is utilised to deliver virulence effector proteins directly into the host cell cytosol. Many of the proteins secreted from such systems require small cytosolic chaperones to maintain the secreted substrates in a secretion-competent state. CesT serves a chaperone function for the enteropathogenic E. coli (EPEC) translocated intimin receptor (Tir) protein, which confers upon EPEC the ability to alter host cell morphology following intimate bacterial attachment [].; GO: 0009405 pathogenesis, 0050708 regulation of protein secretion, 0005737 cytoplasm; PDB: 1K3E_A 3KXY_E 1S28_C 1JYA_B 1K6Z_B 2BSH_A 2BSJ_B 2BHO_A 2BSI_B 3EPU_A ....
Probab=49.35 E-value=38 Score=20.89 Aligned_cols=53 Identities=21% Similarity=0.402 Sum_probs=32.7
Q ss_pred HHHHHHHhcCe--EEcCCCCCCCC-CCc----eEEEEEecCChhHHHHHHHHHHHHHHHhh
Q 042816 107 LWDKLLNVAKV--NVTPGSSCHCI-EPG----WFSFSFTLLTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 107 ~~~~l~~~~gi--~v~pg~~f~~~-~~~----~iRi~~~~~~~~~l~~~~~~l~~~~~~~~ 160 (163)
+.+.+++ .+. .-.+|..++.. ..+ +.|+.+...+.+++...++.+.+..+.++
T Consensus 60 ~~~~lL~-~N~~~~~~~~~~l~ld~~~~~l~L~~~~~~~~l~~~~l~~~l~~fi~~~~~w~ 119 (119)
T PF05932_consen 60 LLRRLLQ-ANLFGAETGGGVLGLDPESGQLVLWQRLPLEGLDAEELEALLENFIELAEEWR 119 (119)
T ss_dssp HHHHHHH-HHHHHSHTTT-EEEEETTTTEEEEEEEEEGTTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-hcccccccCCeEEEEEcCCCEEEEEEEcCcccCCHHHHHHHHHHHHHHHHHhC
Confidence 7777887 444 33445555532 234 45555555677888888888888777654
No 364
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=47.62 E-value=36 Score=24.65 Aligned_cols=97 Identities=15% Similarity=0.161 Sum_probs=56.8
Q ss_pred EEecCHHHHHHHHHhhc-ccCCChHH-------HHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCC
Q 042816 12 IYSYNNSVLAAAKKLAR-FSSVSAPS-------QNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSN 83 (163)
Q Consensus 12 ~i~~~~~~~~~~~~~~~-~~~~s~~~-------q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~ 83 (163)
+.+ ++++++..+.... +.++|..- ..+.+.+++-+.| |.+.++-+..-.+..-.+.+.-+++ -|+
T Consensus 46 IAa-dp~LV~~~~~~s~lPICVSaVep~~f~~aV~AGAdliEIGNf-DsFY~qGr~f~a~eVL~Lt~~tR~L-----LP~ 118 (242)
T PF04481_consen 46 IAA-DPELVKLAKSLSNLPICVSAVEPELFVAAVKAGADLIEIGNF-DSFYAQGRRFSAEEVLALTRETRSL-----LPD 118 (242)
T ss_pred ecC-CHHHHHHHHHhCCCCeEeecCCHHHHHHHHHhCCCEEEecch-HHHHhcCCeecHHHHHHHHHHHHHh-----CCC
Confidence 345 8999998887776 45555432 3345566666666 8888887776666655555555543 122
Q ss_pred ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcC
Q 042816 84 GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTP 121 (163)
Q Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~p 121 (163)
- .+.+.+|..+. .+...+++..|.+ .|+-+.-
T Consensus 119 ~--~LsVTVPHiL~---ld~Qv~LA~~L~~-~GaDiIQ 150 (242)
T PF04481_consen 119 I--TLSVTVPHILP---LDQQVQLAEDLVK-AGADIIQ 150 (242)
T ss_pred C--ceEEecCcccc---HHHHHHHHHHHHH-hCCcEEE
Confidence 2 12233333221 0245688887765 7776643
No 365
>PF09885 DUF2112: Uncharacterized protein conserved in archaea (DUF2112); InterPro: IPR012356 The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=47.38 E-value=75 Score=21.06 Aligned_cols=27 Identities=7% Similarity=0.226 Sum_probs=20.6
Q ss_pred eEEEEEecCChhHHHHHHHHHHHHHHHh
Q 042816 132 WFSFSFTLLTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 132 ~iRi~~~~~~~~~l~~~~~~l~~~~~~~ 159 (163)
-+-+.+.. ++++....+.+|.++++++
T Consensus 117 iLel~YP~-~~ee~~~~V~~I~~FL~~L 143 (143)
T PF09885_consen 117 ILELKYPT-NEEEAIDFVNKINDFLKSL 143 (143)
T ss_pred eEEeeCCC-ChHHHHHHHHHHHHHHhcC
Confidence 34556655 7888999999999988764
No 366
>PF01930 Cas_Cas4: Domain of unknown function DUF83; InterPro: IPR022765 This entry represents an uncharacterised domain found in several proteins, including DNA replication helicase Dna2, clustered regularly interspaced short palindromic repeats (CRISPR)-associated exonuclease Cas4 and putative RecB family exonuclease proteins.
Probab=47.21 E-value=24 Score=23.66 Aligned_cols=52 Identities=17% Similarity=0.194 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 106 ELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 106 ~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
.+...|++..|+.+..|.-+........++-+.....+.+.+.++.+.++++
T Consensus 87 ~~Y~~lL~~~g~~v~~G~i~y~~~~~~~~v~~~~~~~~~v~~~i~~i~~~~~ 138 (162)
T PF01930_consen 87 AAYALLLEEFGIPVKRGYIYYIEDRKRVRVEITEELRRKVEKLIEEIRKILE 138 (162)
T ss_pred HHHHHHHHhcCccceeEEEEEecCCeEEEEeCCHHHHHHHHHHHHHHHHHHh
Confidence 3444566678999887876665445566766654233445666666666554
No 367
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=46.94 E-value=54 Score=26.07 Aligned_cols=25 Identities=12% Similarity=0.339 Sum_probs=18.4
Q ss_pred CceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 130 PGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 130 ~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
++-+|+|++- |+.+..++-|.+++.
T Consensus 401 ~~liRlsvGl---E~~~dli~dl~~Al~ 425 (427)
T PRK05994 401 PDVVRLSIGI---EDVDDIIADLEQALA 425 (427)
T ss_pred CCcEEEEecc---CCHHHHHHHHHHHHh
Confidence 4689999997 556666777766664
No 368
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=45.78 E-value=1.7e+02 Score=24.13 Aligned_cols=95 Identities=7% Similarity=-0.012 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc-CCcccc-CCceeEEEeecCCcccCC------------C---hhhHHHHHHHHHHhcC
Q 042816 54 ININRERLRRLYVKFVAGLRQL-GIECAK-SNGGFYCWADMSGLISSY------------S---EKGELELWDKLLNVAK 116 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~-g~~~~~-~~~g~~~~~~~~~~~~~~------------~---~~~~~~~~~~l~~~~g 116 (163)
++.+.+...+..+++.+.|++. ++++.. |+-+...+--.|..++.. + ..-...+.+.+.++..
T Consensus 398 ~~~ii~~~~~la~~l~~~L~~~~~~el~~~p~l~iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~ 477 (522)
T TIGR03799 398 YELLIDQSIEKAKYFADLIQQQPDFELVTEPELCLLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAGK 477 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeEEecCCCccEEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCC
Confidence 4677777888899999999888 777654 445544443234332110 0 0012355555555334
Q ss_pred eEEcCC----CCCCCCCCceEEEEEecC--ChhHHHHH
Q 042816 117 VNVTPG----SSCHCIEPGWFSFSFTLL--TEKDIHVV 148 (163)
Q Consensus 117 i~v~pg----~~f~~~~~~~iRi~~~~~--~~~~l~~~ 148 (163)
+.|.+. ..+...+...+|+++.++ +.++++..
T Consensus 478 ~~vs~t~l~~~~~~g~~~~~lR~~~~np~tt~~~i~~~ 515 (522)
T TIGR03799 478 SFVSRTRLTPAQYDHQPTVVFRVVLANPLTTHEILQDI 515 (522)
T ss_pred EEEEEEEecccccCCCCcEEEEEEecCCCCCHHHHHHH
Confidence 444432 222222246799999862 33444443
No 369
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=45.39 E-value=1.7e+02 Score=23.83 Aligned_cols=127 Identities=10% Similarity=0.006 Sum_probs=72.6
Q ss_pred ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCccccCCceeE-EEeecCCcccCCChhhHHH
Q 042816 29 FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIECAKSNGGFY-CWADMSGLISSYSEKGELE 106 (163)
Q Consensus 29 ~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~ 106 (163)
+++..++.-.+-+.+...+ .+=+++.-+.---+.+++.+.|+.. -+-+.+..-.-+ +.++......+.+ .+..+
T Consensus 321 ~~Gs~~il~~a~~YI~~mG---~~GL~~ase~AvLNANYia~rL~~~y~~~y~~~~~~~HE~ild~r~l~~~~G-v~~~D 396 (496)
T COG1003 321 PYGSASILPIAWAYIRMMG---ADGLKQASEVAVLNANYIARRLKGYYPVPYTGENRVAHECILDARPLKKETG-VRALD 396 (496)
T ss_pred ccCcchHHHHHHHHHHHHh---HHHHHHHHHHHHHhHHHHHHHhhhcCccccCCCCcceeEEEeechHhHhhcC-CcHHH
Confidence 4455555555555555555 3335566666667888999999874 222221110111 2334432222222 37899
Q ss_pred HHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHHHhhh
Q 042816 107 LWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 107 ~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
++++|++ +|+.-.. -.|...=.+.+-|=... .+.++++.+++.+.++.++.+.
T Consensus 397 vAKrLlD-~GfHaPT-~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~Ea~~ 450 (496)
T COG1003 397 VAKRLLD-YGFHAPT-MYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIREEADA 450 (496)
T ss_pred HHHHHHh-cCCCCCc-ccCccccccceeecCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999998 9988543 33441114555555432 3667899999988888776554
No 370
>COG5561 Predicted metal-binding protein [Function unknown]
Probab=42.13 E-value=62 Score=19.82 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=29.2
Q ss_pred CCccccCCceeEEE-eecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCC
Q 042816 76 GIECAKSNGGFYCW-ADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCH 126 (163)
Q Consensus 76 g~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~ 126 (163)
|.+...-...++.. ...|- .+.+++++.+.++.||-|.-|++|.
T Consensus 56 gaeaihfasCml~~~PkCpy-------~~~eei~Kk~ie~~~i~Vv~gTH~~ 100 (101)
T COG5561 56 GAEAIHFASCMLAFKPKCPY-------ASAEEIAKKEIEKMGIKVVMGTHFY 100 (101)
T ss_pred ccceeeeeeeeeccCCCCCc-------cCHHHHHHHHHHHhCCcEEeeccee
Confidence 55555444444444 33442 2678898999998999999888764
No 371
>PF04237 YjbR: YjbR; InterPro: IPR007351 This is a family of uncharacterised proteins.; PDB: 3H9X_D 2KFP_A 2FKI_A 2A1V_A.
Probab=41.13 E-value=65 Score=19.25 Aligned_cols=43 Identities=12% Similarity=0.189 Sum_probs=25.0
Q ss_pred HHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEE-ecCChhHHHHHHH
Q 042816 105 LELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSF-TLLTEKDIHVVME 150 (163)
Q Consensus 105 ~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~-~~~~~~~l~~~~~ 150 (163)
.+-...|.+.+ -.+.|+..++. .+|+.+.+ +.++.+++.+.++
T Consensus 43 ~e~~~~l~~~~-~~~~p~~h~~k--~~Wv~v~l~~~v~~~~l~~li~ 86 (92)
T PF04237_consen 43 PEEQEALREQY-DGFFPAYHMNK--KHWVSVRLDGDVDDEELRELID 86 (92)
T ss_dssp HHHHHHHHHSS-TTEEE-TSS-T--TTEEEEETTSSS-HHHHHHHHH
T ss_pred HHHHHHHHhhC-CCEEeCCccCC--CcEEEEEeCCCCCHHHHHHHHH
Confidence 34445566653 33345555553 78999999 5667777766654
No 372
>cd04751 Commd3 COMM_Domain containing protein 3. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=40.75 E-value=73 Score=19.54 Aligned_cols=27 Identities=11% Similarity=0.343 Sum_probs=22.5
Q ss_pred EEEEecCChhHHHHHHHHHHHHHHHhhh
Q 042816 134 SFSFTLLTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 134 Ri~~~~~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
++.|.+ +.+++...+..|+++...+.+
T Consensus 66 ~i~f~c-~~e~L~~Li~~Lk~A~~~~e~ 92 (95)
T cd04751 66 DINFTC-TLEQLQDLVNKLKDAAKNIER 92 (95)
T ss_pred eEEEEe-CHHHHHHHHHHHHHHHHHHHH
Confidence 777776 889999999999998877654
No 373
>PRK08187 pyruvate kinase; Validated
Probab=40.71 E-value=1.1e+02 Score=25.14 Aligned_cols=31 Identities=3% Similarity=0.014 Sum_probs=25.0
Q ss_pred CceEEEEEecCChhHHHHHHHHHHHHHHHhh
Q 042816 130 PGWFSFSFTLLTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 130 ~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~ 160 (163)
-+.+||+++.-+.+...+.++.++++-+++.
T Consensus 160 mdvaRiN~SHg~~e~~~~~i~~vR~a~~~~g 190 (493)
T PRK08187 160 MDCARINCAHDDPAAWQAMIGHLRQAERATG 190 (493)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHHcC
Confidence 4679999997677888888888888777654
No 374
>TIGR03271 methan_mark_5 putative methanogenesis marker protein 5. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=40.03 E-value=1.1e+02 Score=20.28 Aligned_cols=27 Identities=7% Similarity=0.258 Sum_probs=20.4
Q ss_pred eEEEEEecCChhHHHHHHHHHHHHHHHh
Q 042816 132 WFSFSFTLLTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 132 ~iRi~~~~~~~~~l~~~~~~l~~~~~~~ 159 (163)
-+-+.+.. ++++....+.++.++++++
T Consensus 116 iLEl~YP~-~~e~~~~~V~~i~~FL~~l 142 (142)
T TIGR03271 116 ILELDYPT-SEEEGIIFVRKINDFLDSL 142 (142)
T ss_pred eEEeeCCC-ChhHHHHHHHHHHHHHhcC
Confidence 34556655 7788999999999988764
No 375
>cd08818 CARD_MDA5_1 Caspase activation and recruitment domain found in MDA5, first repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), first repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-
Probab=39.60 E-value=78 Score=19.31 Aligned_cols=30 Identities=17% Similarity=0.099 Sum_probs=14.3
Q ss_pred CHHHHHHHHHhhcccCCChHHHHHHHHhcC
Q 042816 16 NNSVLAAAKKLARFSSVSAPSQNLLVSMLS 45 (163)
Q Consensus 16 ~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~ 45 (163)
+++..+.+.+-....+...-+|..+..+.+
T Consensus 32 ~~e~ke~I~a~~~~~Gn~~AA~~LL~~l~~ 61 (88)
T cd08818 32 EAEVKERIRAAAATRGNIAAAELLLSTLEK 61 (88)
T ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Confidence 445555555554444444444444444444
No 376
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=39.20 E-value=1.7e+02 Score=23.55 Aligned_cols=86 Identities=20% Similarity=0.200 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc-CCccccCCceeEEE-eecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC
Q 042816 51 QKFININRERLRRLYVKFVAGLRQL-GIECAKSNGGFYCW-ADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI 128 (163)
Q Consensus 51 ~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~ 128 (163)
.+=+++.-+....+..++.+.|++. +..+. +..||=+ +...+. ....++.+..+. .|+... + .
T Consensus 340 ~~GL~~iA~~~~~~A~yl~~~L~~~~~~~~~--~~~f~e~v~~~~~~------~~~~~l~~~~~~-~gl~~~----~--~ 404 (429)
T PF02347_consen 340 PEGLREIAERIHLNAHYLAERLKKIYGLPFD--NPFFFEFVVVFSKD------KEVEELLKRGIE-GGLNLR----Y--P 404 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTBECSS--SSSBSSEEEEESS-------HHHHHHHHTT-----EEEG----G--G
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccC--CCCceeeeeecCCc------HHHHHHHHHHHh-cCCCcc----c--c
Confidence 4557888889999999999999997 44443 3334322 222221 133345555544 564432 1 2
Q ss_pred CCceEEEEEec-CChhHHHHHHHH
Q 042816 129 EPGWFSFSFTL-LTEKDIHVVMER 151 (163)
Q Consensus 129 ~~~~iRi~~~~-~~~~~l~~~~~~ 151 (163)
..+.+-+|+.. .+.++++..++.
T Consensus 405 ~~~~~li~~TE~~t~edid~lv~~ 428 (429)
T PF02347_consen 405 DDGALLICVTETRTKEDIDRLVEA 428 (429)
T ss_dssp -SSEEEEE--TT--HHHHHHHHH-
T ss_pred CCCeEEEEccCCCCHHHHHHHHhc
Confidence 24577777764 255666665543
No 377
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=39.00 E-value=70 Score=17.66 Aligned_cols=34 Identities=18% Similarity=0.094 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEE
Q 042816 103 GELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSF 137 (163)
Q Consensus 103 ~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~ 137 (163)
.-.++.+.|.+ +|+.|.....+...++..+|+.+
T Consensus 14 ~La~v~~~l~~-~~inI~~i~~~~~~~~~~~rl~~ 47 (66)
T cd04908 14 RLAAVTEILSE-AGINIRALSIADTSEFGILRLIV 47 (66)
T ss_pred hHHHHHHHHHH-CCCCEEEEEEEecCCCCEEEEEE
Confidence 34566665654 88877544334333357888876
No 378
>PF13113 DUF3970: Protein of unknown function (DUF3970)
Probab=38.74 E-value=49 Score=18.49 Aligned_cols=20 Identities=10% Similarity=0.285 Sum_probs=15.1
Q ss_pred EEEEecCChhHHHHHHHHHHH
Q 042816 134 SFSFTLLTEKDIHVVMERIRR 154 (163)
Q Consensus 134 Ri~~~~~~~~~l~~~~~~l~~ 154 (163)
|+.++. +.++++++++.|.+
T Consensus 3 qVRl~G-~~eEi~~fi~~~~~ 22 (60)
T PF13113_consen 3 QVRLSG-TKEEIEEFIKSFEK 22 (60)
T ss_pred eEEecC-CHHHHHHHHHhhhh
Confidence 555665 67899999888876
No 379
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=38.70 E-value=55 Score=26.21 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=19.5
Q ss_pred CceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 130 PGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 130 ~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
++-+|||++- |+.+..++-|.+++++
T Consensus 411 ~~liRlsvGl---E~~~dLi~Dl~~Al~~ 436 (437)
T PRK05613 411 QATVRLSVGI---EDIDDIIADLEGGFAA 436 (437)
T ss_pred CCeEEEEecc---CCHHHHHHHHHHHHhh
Confidence 5789999997 5667777777776653
No 380
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=37.90 E-value=1.8e+02 Score=22.18 Aligned_cols=107 Identities=12% Similarity=0.083 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHhhhcCCccc----cCCceeEEEeec-CCcccCCChhhHHHHHHHHHHh
Q 042816 48 KFVQKFININRERLR--------RLYVKFVAGLRQLGIECA----KSNGGFYCWADM-SGLISSYSEKGELELWDKLLNV 114 (163)
Q Consensus 48 ~~~~~~~~~~~~~~~--------~~~~~l~~~l~~~g~~~~----~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~ 114 (163)
..++..+.+.|+.+. +-.+.+.+.|++-+.-+. ....+-.+|+++ ... .-+......|.+.
T Consensus 159 p~ld~~i~~~R~r~~~~~~~~~~~~ir~li~~Lk~G~~v~~lpDqd~~~~~~vfvpFFg~~------a~T~t~~~~LA~~ 232 (308)
T COG1560 159 PLLDWLITRGRERFGGRLLPRKGEGIRQLIKALKQGEAVGYLPDQDYGPGESVFVPFFGVP------AATTTGPAKLARL 232 (308)
T ss_pred HHHHHHHHHHHHhcCCcccCCCchhHHHHHHHHhcCCeEEEecCcccCCCCCeEeccCCCc------ccccchHHHHHHH
Confidence 345777777777766 445556666665421111 111122233333 111 1234445556777
Q ss_pred cCeEEcCCCCCCCCCCceEEEEEec----CChhHHHHHHHHHHHHHHHhh
Q 042816 115 AKVNVTPGSSCHCIEPGWFSFSFTL----LTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 115 ~gi~v~pg~~f~~~~~~~iRi~~~~----~~~~~l~~~~~~l~~~~~~~~ 160 (163)
.|..|.|.........+.+++.+.. ...++++....+|.+.+++..
T Consensus 233 ~~a~vip~~~~r~~~g~~y~l~i~p~~~~~~~~D~~~~a~~mn~~~E~~I 282 (308)
T COG1560 233 TGAAVVPVFPVRNPDGSGYTLHIHPPMTDDPSEDVEADAQRMNDFVEKWI 282 (308)
T ss_pred hCCCEEEEEEEEeCCCCeEEEEEeccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 8888888665554445678888875 133567888888888887643
No 381
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=37.58 E-value=1.4e+02 Score=21.07 Aligned_cols=54 Identities=17% Similarity=0.179 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHhhh
Q 042816 103 GELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 103 ~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
+..+|++.+.+ . +.+.........+.++|.+-. .+.++.++...++++....+.
T Consensus 10 E~~~fle~l~~-~---~~~~~~~v~~k~n~l~I~i~G-~~~eike~~~~Ik~~~~~vr~ 63 (190)
T PF09840_consen 10 ECEEFLERLSK-M---VKSIYIYVEVKGNSLKIEIQG-YEKEIKEAIRRIKELVRRVRS 63 (190)
T ss_pred HHHHHHHHHHh-h---ccCcEEEEEEeCCEEEEEEec-ChHHHHHHHHHHHHHHHHHHH
Confidence 66788887755 3 111111112235899999977 667999999999998877654
No 382
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=37.56 E-value=1.4e+02 Score=20.70 Aligned_cols=45 Identities=9% Similarity=0.092 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCccccCCceeEEEee
Q 042816 47 TKFVQKFININRERLRRLYVKFVAGLRQL-GIECAKSNGGFYCWAD 91 (163)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~~~ 91 (163)
+.++++-.+++++.++.....+.+.+++. ..++..+..|++..+.
T Consensus 31 ~~~~~~s~~rnk~l~~~e~~~I~~~i~~~~~~~~~~t~sGl~Y~v~ 76 (177)
T TIGR03516 31 GTTIKLSAERNKKLIAAEEAAIKRIISADSIVKYETSQNGFWYYYN 76 (177)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceECCCccEEEEE
Confidence 44557778999999999999999999976 5777777777655433
No 383
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=36.70 E-value=58 Score=23.58 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHhcCeE---E--cCC--CCCCCCCCceEEEEEec
Q 042816 103 GELELWDKLLNVAKVN---V--TPG--SSCHCIEPGWFSFSFTL 139 (163)
Q Consensus 103 ~~~~~~~~l~~~~gi~---v--~pg--~~f~~~~~~~iRi~~~~ 139 (163)
+..++++.+++++|+. | .+| +..+.+.+..+|+|-..
T Consensus 38 TGae~Ar~iL~~~gl~~V~Ve~~~G~LtDHYdP~~k~vrLS~~v 81 (222)
T PF04298_consen 38 TGAEVARHILDRNGLSDVRVERVPGELTDHYDPRNKVVRLSEDV 81 (222)
T ss_pred CHHHHHHHHHHHCCCCCeeEEEeCCCCCCCcCCCCCEEEeCCcc
Confidence 7899999999988774 3 356 44444567899998654
No 384
>PRK14725 pyruvate kinase; Provisional
Probab=36.27 E-value=1.2e+02 Score=25.52 Aligned_cols=31 Identities=3% Similarity=-0.009 Sum_probs=24.9
Q ss_pred CceEEEEEecCChhHHHHHHHHHHHHHHHhh
Q 042816 130 PGWFSFSFTLLTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 130 ~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~ 160 (163)
-+.+||+++.-+.+...+.++.++++-+++.
T Consensus 166 mdvaRINcAHg~~e~w~~mi~~vR~a~~~~g 196 (608)
T PRK14725 166 MDIARINCAHDDPEAWRAMIANVRTAEEELG 196 (608)
T ss_pred CCEeeeECCCCCHHHHHHHHHHHHHHHHHcC
Confidence 4568999997677888888999888877654
No 385
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=35.85 E-value=80 Score=24.98 Aligned_cols=24 Identities=17% Similarity=0.450 Sum_probs=17.1
Q ss_pred CceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 130 PGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 130 ~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
++.+|||++- |+.+..++-|.+++
T Consensus 394 ~~liR~svGl---E~~~dl~~dl~~Al 417 (418)
T TIGR01326 394 PGLIRLSVGI---ENIDDIIADLEQAL 417 (418)
T ss_pred CCeEEEEecC---CCHHHHHHHHHHhh
Confidence 5789999997 45666666666554
No 386
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=35.06 E-value=2.4e+02 Score=22.78 Aligned_cols=62 Identities=13% Similarity=0.105 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhc-CeEEcCC-CCCCC
Q 042816 55 NINRERLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVA-KVNVTPG-SSCHC 127 (163)
Q Consensus 55 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-gi~v~pg-~~f~~ 127 (163)
..+.+...-.++.+.++++.. .+ ||+.++-.+.-.. ...+..++++|+++ .+.+.|. ..|+.
T Consensus 341 ~di~~~~~LQr~LllsAi~lv-----~~-GGvLVYSTCSI~~-----~ENE~vV~yaL~K~p~~kL~p~~~~iG~ 404 (460)
T KOG1122|consen 341 KDILRYAHLQRELLLSAIDLV-----KA-GGVLVYSTCSITV-----EENEAVVDYALKKRPEVKLVPTGLDIGG 404 (460)
T ss_pred HHHHHhHHHHHHHHHHHHhhc-----cC-CcEEEEEeeecch-----hhhHHHHHHHHHhCCceEeccccccCCC
Confidence 344444455556666655542 22 7877765543221 25677788888877 8888884 44554
No 387
>PRK09371 gas vesicle synthesis protein GvpA; Provisional
Probab=34.80 E-value=60 Score=18.62 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHhcCeEEc
Q 042816 103 GELELWDKLLNVAKVNVT 120 (163)
Q Consensus 103 ~~~~~~~~l~~~~gi~v~ 120 (163)
+-.++.+.+++ +||++.
T Consensus 8 sLadvldriLD-KGiVI~ 24 (68)
T PRK09371 8 SLAEVIDRILD-KGIVVD 24 (68)
T ss_pred cHHHHHHHHcc-CCeEEE
Confidence 45678888887 899974
No 388
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=33.87 E-value=1.6e+02 Score=24.01 Aligned_cols=44 Identities=14% Similarity=0.204 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHhh
Q 042816 103 GELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 103 ~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~ 160 (163)
++.+....|++ .|+ +.+||+++.-+.++..+.++.++++-+++.
T Consensus 15 ~~~e~l~~li~-aG~-------------~v~RiN~sHg~~~~~~~~i~~vr~~~~~~~ 58 (480)
T cd00288 15 DSVENLKKLIK-AGM-------------NVARMNFSHGSHEYHQSRIDNVREAAEKTG 58 (480)
T ss_pred CCHHHHHHHHH-cCC-------------CEEEEEcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 44555666766 554 458999998788888899999988776654
No 389
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=32.19 E-value=1.8e+02 Score=23.74 Aligned_cols=30 Identities=10% Similarity=0.146 Sum_probs=24.8
Q ss_pred ceEEEEEecCChhHHHHHHHHHHHHHHHhh
Q 042816 131 GWFSFSFTLLTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 131 ~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~ 160 (163)
+.+||+++.-+.++..+.++.++++-+++.
T Consensus 28 ~~~R~N~shg~~~~~~~~i~~ir~~~~~~~ 57 (473)
T TIGR01064 28 NVARLNFSHGSHEEHGKRIENVREAAEKLG 57 (473)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHhC
Confidence 458999998788888999999998876654
No 390
>PRK06247 pyruvate kinase; Provisional
Probab=32.08 E-value=1.7e+02 Score=23.88 Aligned_cols=30 Identities=20% Similarity=0.341 Sum_probs=24.6
Q ss_pred ceEEEEEecCChhHHHHHHHHHHHHHHHhh
Q 042816 131 GWFSFSFTLLTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 131 ~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~ 160 (163)
+-+|++++.-+.++..+.++.++++-+++.
T Consensus 32 ~v~RlN~SHg~~e~~~~~i~~vr~~~~~~~ 61 (476)
T PRK06247 32 DVFRLNFSHGDHDDHRELYKRIREVEDETG 61 (476)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHcC
Confidence 458999998788888999999988776654
No 391
>PF15219 TEX12: Testis-expressed 12
Probab=31.88 E-value=1.1e+02 Score=18.88 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 042816 50 VQKFININRERLRRLYVKFVAGL 72 (163)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~l~~~l 72 (163)
++.++.+.++.+++|...+.+.|
T Consensus 76 lEnfLkqkre~LrQrlt~isntL 98 (100)
T PF15219_consen 76 LENFLKQKRECLRQRLTVISNTL 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566666666666666665554
No 392
>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]
Probab=31.43 E-value=2.9e+02 Score=22.62 Aligned_cols=54 Identities=17% Similarity=0.158 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec--CChhHHHHHHHHHHHHHHHh
Q 042816 103 GELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL--LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 103 ~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~--~~~~~l~~~~~~l~~~~~~~ 159 (163)
..+.+.+.+.....|.+.|.+.-+ .-.+|++++. .+.++++.+-+.|.+....+
T Consensus 417 ~ne~Ll~~in~~g~i~l~~~~l~g---k~vlRf~V~s~~t~~~di~~a~~~I~~~a~~l 472 (511)
T KOG0628|consen 417 INEALLNRLNSSGRIHLVPASLHG---KFVLRFAVCSPLTNESDIDEAWKIIFEAADEL 472 (511)
T ss_pred HHHHHHHHHHhcCcEEEEEeeecc---eEEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Confidence 678888888888899999876533 6789999975 36678899988888876654
No 393
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=31.02 E-value=2.7e+02 Score=22.15 Aligned_cols=60 Identities=18% Similarity=0.065 Sum_probs=33.6
Q ss_pred EEEEEecCHHHHHHHHHhhc-cc--CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 9 ISVIYSYNNSVLAAAKKLAR-FS--SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 9 iG~~i~~~~~~~~~~~~~~~-~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
.|.++++++++.+.+..... .. ..+++..-.+..-++.- .-..+...++...+.+.|+++
T Consensus 220 ~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~dA~l~lRGlkTL-------~~Rm~~~~~nA~~IA~~L~~~ 282 (396)
T COG0626 220 GGVVLTPNEELYELLFFAQRANTGAVLSPFDAWLLLRGLRTL-------ALRMERHNENALKIAEFLADH 282 (396)
T ss_pred eeEEecChHHHHHHHHHHHHhhcCCCCCHHHHHHHHhccchH-------HHHHHHHHHHHHHHHHHHhcC
Confidence 57666645566665533333 23 34555555555555542 333344455688888888887
No 394
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=30.30 E-value=90 Score=22.36 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhhcCCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeE
Q 042816 63 RLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVN 118 (163)
Q Consensus 63 ~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~ 118 (163)
+....+.++..+.|+.. .|.|| +++. +-.++.+.+++ .|+-
T Consensus 164 eE~~avAkA~a~~g~~l-EPTGG----Idl~---------N~~~I~~i~l~-aGv~ 204 (218)
T PF07071_consen 164 EELKAVAKACARNGFTL-EPTGG----IDLD---------NFEEIVKICLD-AGVE 204 (218)
T ss_dssp HHHHHHHHHHHHCT-EE-EEBSS------TT---------THHHHHHHHHH-TT-S
T ss_pred HHHHHHHHHHHHcCcee-CCcCC----cCHH---------HHHHHHHHHHH-cCCC
Confidence 34556777777778888 88888 6776 34677777776 7764
No 395
>PF08756 YfkB: YfkB-like domain; InterPro: IPR014866 YfkB is adjacent to YfkA in Bacillus subtilis. In other bacterial species, it is fused to this protein. As YfkA contains a Radical SAM domain it suggests this domain is interacts with them.
Probab=30.06 E-value=1.7e+02 Score=19.58 Aligned_cols=31 Identities=19% Similarity=0.241 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe
Q 042816 102 KGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT 138 (163)
Q Consensus 102 ~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~ 138 (163)
+++.++.+.|.++.+|.|+. +.+|.-|+++.
T Consensus 49 eeD~~Ll~RL~~~~NVTvRN------DPDGRsRLNvN 79 (153)
T PF08756_consen 49 EEDLALLKRLRSEPNVTVRN------DPDGRSRLNVN 79 (153)
T ss_pred HHHHHHHHHHHhCCCCeeec------CCCccceeeee
Confidence 36788889999988999985 22455566553
No 396
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=29.85 E-value=1.3e+02 Score=18.15 Aligned_cols=32 Identities=6% Similarity=0.107 Sum_probs=24.7
Q ss_pred CceEEEEEecCChhHHHHHHHHHHHHHHHhhh
Q 042816 130 PGWFSFSFTLLTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 130 ~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
...+.+.+...+.+++++.++.|.+.+++...
T Consensus 78 ~a~~~~~~R~~p~~~~~~i~~~i~~~~~~~~~ 109 (111)
T PF07687_consen 78 EATLTVDIRYPPGEDLEEIKAEIEAAVEKIAK 109 (111)
T ss_dssp EEEEEEEEEESTCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEECCCcchHHHHHHHHHHHHHHhhh
Confidence 45666666666888999999999999887643
No 397
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=29.65 E-value=1.6e+02 Score=20.18 Aligned_cols=30 Identities=3% Similarity=0.190 Sum_probs=21.7
Q ss_pred CCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 129 EPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 129 ~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
++..-||.+.....+.+++++++|+++..+
T Consensus 128 ~~SsA~iti~a~~~e~l~ea~~~l~ev~~e 157 (170)
T COG2061 128 GESSARITIIAVGKEKLDEALRRLKEVAME 157 (170)
T ss_pred CCcceeEEEEEcChhHHHHHHHHHHHHHhh
Confidence 344555555444779999999999998765
No 398
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=29.56 E-value=2.1e+02 Score=20.29 Aligned_cols=58 Identities=5% Similarity=-0.005 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHhcCeEEcCCC---CCCCCCCceEEEEEec----CChhHHHHHHHHHHHHHHHhhh
Q 042816 103 GELELWDKLLNVAKVNVTPGS---SCHCIEPGWFSFSFTL----LTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 103 ~~~~~~~~l~~~~gi~v~pg~---~f~~~~~~~iRi~~~~----~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
+...|.+.+.+++|+-+.... .|. .-+|.+||.++. .=.++++.|.+.|.+++.++..
T Consensus 50 d~~af~~l~~e~Yg~k~gg~kGn~Tl~-sfDG~~kV~i~~~~~~~Fde~l~~Ak~lIde~l~~w~~ 114 (195)
T PF11363_consen 50 DIEAFIELSAEEYGVKLGGKKGNVTLT-SFDGRYKVTIAVQDRISFDERLQAAKALIDECLNEWAK 114 (195)
T ss_pred HHHHHHHHHHHHhCCCcCCCcCcEEEE-EeCCCEEEEEEecccCCcChHHHHHHHHHHHHHHHHhc
Confidence 667778878888898663211 111 114566666653 1226799999999999988754
No 399
>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]
Probab=29.36 E-value=3.2e+02 Score=22.39 Aligned_cols=93 Identities=19% Similarity=0.208 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHhhhc-CCccc-cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEE
Q 042816 57 NRERLRRLYVKFVAGLRQL-GIECA-KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFS 134 (163)
Q Consensus 57 ~~~~~~~~~~~l~~~l~~~-g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iR 134 (163)
..+..-+....+.+.++++ ++++. +|.-++.+|=.-. .+.-++.+.|.+ .|-.+.. ..| |..+=
T Consensus 355 ~~~~ive~~~~l~egie~i~~i~i~gkp~vs~~~~~s~~--------~~i~elsd~l~~-~GW~lna-lq~----P~a~H 420 (491)
T KOG1383|consen 355 NTQNIVETARKLREGIENIKGIKIVGKPLVSFILFGSND--------VNIFELSDLLRK-KGWILNA-LQF----PAAIH 420 (491)
T ss_pred HHHHHHHHHHHHHHhhhccccceecCCCcEEEEEccCCc--------cchhhhhHHHHh-cCcCccc-cCC----CCceE
Confidence 3344556677788888888 66655 4555544432111 256778886655 7876542 222 23455
Q ss_pred EEEec--CChhHHHHHHHHHHHHHHHhhhcC
Q 042816 135 FSFTL--LTEKDIHVVMERIRRISQTCKSHS 163 (163)
Q Consensus 135 i~~~~--~~~~~l~~~~~~l~~~~~~~~~~~ 163 (163)
|++.. ..++--+..+.-|+++++++.+++
T Consensus 421 i~vt~~~~~~~~A~~~v~Di~~~~~el~~~p 451 (491)
T KOG1383|consen 421 ICVTRVHAREDVADRFVADIRKVVEELKSLP 451 (491)
T ss_pred EEEEeeeccHHHHHHHHHHHHHHHHHHHhCC
Confidence 55543 133345778888888888887653
No 400
>PF09158 MotCF: Bacteriophage T4 MotA, C-terminal; InterPro: IPR015241 Transcription factor MotA is required for the activation of middle promoters in Bacteriophage T4, in addition to phage T4 co-activator AsiA, and sigma-70-containing Escherichia coli RNA polymerase. Phage T4 middle promoters have the sigma70 -10 DNA element, but not the -35 element; instead, they have a MotA box at -30 to which the transcription factor MotA binds []. MotA and AsiA interact with the C-terminal of sigma70 (region 4), which normally binds the -35 element and the beta-flap, thereby diverting sigma70 away from host promoters that require -35 element-binding to phage T4 middle promoters. Transcription factor MotA has two domains: an N-terminal domain required for binding to sigma70, and a C-terminal domain required for binding to the -30 MotA box element in the phage T4 middle promoter. This entry represents the C-terminal domain of MotA factors, which adopts a compact alpha/beta structure comprising three alpha-helices and six beta-strands in the order: alpha1-beta1-beta2-beta3-beta4-alpha2-beta5-beta6-alpha3. In this architecture, the domain's hydrophobic core is at the sheet-helix interface, and the second surface of the beta-sheet is completely exposed. It contains a DNA-binding motif, with a consensus sequence containing nine base pairs (5'-TTTGCTTTA-3'), that appears to bind to various mot boxes, allowing access to the minor groove towards the 5'-end of this sequence and the major groove towards the 3'-end [].; PDB: 1KAF_B.
Probab=29.16 E-value=1.2e+02 Score=19.04 Aligned_cols=29 Identities=21% Similarity=0.466 Sum_probs=20.9
Q ss_pred HHHHHHhhhcCCccccCCceeEEEeecCC
Q 042816 66 VKFVAGLRQLGIECAKSNGGFYCWADMSG 94 (163)
Q Consensus 66 ~~l~~~l~~~g~~~~~~~~g~~~~~~~~~ 94 (163)
+-..+.|.++|.++....||-+.++|++.
T Consensus 63 e~~~~~f~slG~~~K~~~gg~ntYiDi~~ 91 (103)
T PF09158_consen 63 EEIIKKFTSLGMEVKQKKGGANTYIDIPC 91 (103)
T ss_dssp HHHHHHHHHTT-EEEE-TTS-EEEEEEE-
T ss_pred HHHHHHHHhcCcEEEEccCCceEEEEccc
Confidence 44667888889999988888899999985
No 401
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=28.45 E-value=2.5e+02 Score=20.86 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhhhcCCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEc
Q 042816 59 ERLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120 (163)
Q Consensus 59 ~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~ 120 (163)
..+.++...+.+.|++.|++ +.||+.-.+.+ ...++.+.+.+ .|.-|.
T Consensus 24 ~rv~~nt~riL~lL~~~gik-----ATFFv~g~~~e--------~~p~lir~i~~-~GhEIg 71 (265)
T TIGR03006 24 CRVERNTDRILDLLDRHGVK-----ATFFTLGWVAE--------RYPELVRRIVA-AGHELA 71 (265)
T ss_pred chHHHhHHHHHHHHHHcCCc-----EEEEEeccchh--------hCHHHHHHHHH-cCCEee
Confidence 34555677889999988665 45555433322 23567777776 676554
No 402
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=28.15 E-value=4e+02 Score=23.16 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 103 GELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 103 ~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
+...+.++|. ++||.+--.. ..++-+-++. .+.++++..++.|.++
T Consensus 510 pg~~v~~~L~-e~gI~~E~~d------~~~iLfl~s~g~t~~~~~~L~~aL~~f 556 (714)
T PRK15400 510 PASIVAKYLD-EHGIVVEKTG------PYNLLFLFSIGIDKTKALSLLRALTDF 556 (714)
T ss_pred CHHHHHHHHH-HcCCEEEecC------CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4667777774 5899986433 2334444332 2667777666666655
No 403
>PF00741 Gas_vesicle: Gas vesicle protein; InterPro: IPR000638 Gas vesicles are small, hollow, gas filled protein structures found in several cyanobacterial and archaebacterial microorganisms []. They allow the positioning of the bacteria at the favourable depth for growth. Gas vesicles are hollow cylindrical tubes, closed by a hollow, conical cap at each end. Both the conical end caps and central cylinder are made up of 4-5 nm wide ribs that run at right angles to the long axis of the structure. Gas vesicles seem to be constituted of two different protein components, GVPa and GVPc. GVPa, a small protein of about 70 amino acid residues, is the main constituent of gas vesicles and form the essential core of the structure. The sequence of GVPa is extremely well conserved. GvpJ and gvpM, two proteins encoded in the cluster of genes required for gas vesicle synthesis in the archaebacteria Halobacterium salinarium and Halobacterium mediterranei (Haloferax mediterranei), have been found [] to be evolutionary related to GVPa. The exact function of these two proteins is not known, although they could be important for determining the shape determination gas vesicles. The N-terminal domain of Aphanizomenon flos-aquae protein gvpA/J is also related to GVPa.; GO: 0005198 structural molecule activity, 0012506 vesicle membrane
Probab=27.78 E-value=95 Score=15.79 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec
Q 042816 105 LELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL 139 (163)
Q Consensus 105 ~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~ 139 (163)
.++.+.+++ +|+.+ .+.+|+|++.
T Consensus 3 ~d~LdriLd-kGvVi----------~gdi~isva~ 26 (39)
T PF00741_consen 3 VDLLDRILD-KGVVI----------DGDIRISVAG 26 (39)
T ss_pred HHHHHHHcC-CceEE----------EEEEEEEEcc
Confidence 456677787 88887 4678888774
No 404
>PF14085 DUF4265: Domain of unknown function (DUF4265)
Probab=27.29 E-value=1.7e+02 Score=18.62 Aligned_cols=32 Identities=13% Similarity=-0.056 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhhcCCccccCCceeEEEeecCCc
Q 042816 63 RLYVKFVAGLRQLGIECAKSNGGFYCWADMSGL 95 (163)
Q Consensus 63 ~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~ 95 (163)
...+.+.+.|.++|+++-.... -++-+++|..
T Consensus 65 ~~~~~v~~~l~~lG~~~E~~~~-~~lav~VP~~ 96 (117)
T PF14085_consen 65 DDIEAVREELEALGCTVEGFSE-RMLAVDVPPS 96 (117)
T ss_pred hhHHHHHHHHHHcCCeEEccCC-CEEEEEECCC
Confidence 3456677888888888877776 4566688874
No 405
>KOG2278 consensus RNA:NAD 2'-phosphotransferase TPT1 [Translation, ribosomal structure and biogenesis]
Probab=27.26 E-value=66 Score=22.43 Aligned_cols=38 Identities=18% Similarity=0.351 Sum_probs=27.0
Q ss_pred CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCC
Q 042816 77 IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPG 122 (163)
Q Consensus 77 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg 122 (163)
++=.+.....|+|++.++.. .|...|++ -.+||.+++|
T Consensus 146 ISGmRss~nvyIfId~~~al-----~dgi~fyr---S~N~ViLT~g 183 (207)
T KOG2278|consen 146 ISGMRSSCNVYIFIDIKKAL-----EDGIAFYR---SDNGVILTEG 183 (207)
T ss_pred hhhhhccceEEEEecchHHH-----hhhhHHhh---hcCceEeccC
Confidence 33455788899999998644 35556654 2489999998
No 406
>PRK06946 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=27.22 E-value=2.7e+02 Score=20.81 Aligned_cols=58 Identities=10% Similarity=0.000 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec----CChhHHHHHHHHHHHHHHHhh
Q 042816 103 GELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL----LTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 103 ~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~----~~~~~l~~~~~~l~~~~~~~~ 160 (163)
.+......|..+.|..|.|......++....++.+.. .+.++.++..+.+.+++++..
T Consensus 207 ~t~~~~a~LA~~~~a~vvp~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~n~~lE~~I 268 (293)
T PRK06946 207 CTLTAVSRLARTGGAQVVPFITEVLPDYKGYRLRVFKPWENYPTGDDDLDARRMNAFLEEQI 268 (293)
T ss_pred HHhHHHHHHHHhcCCeEEEEEEEEeCCCCeEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHH
Confidence 4455666677778999999755433323346666643 133455666777777776543
No 407
>PRK06739 pyruvate kinase; Validated
Probab=26.66 E-value=2.3e+02 Score=22.17 Aligned_cols=40 Identities=10% Similarity=0.207 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 103 GELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 103 ~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
++.+....|++ .|+- -+||+++.-+.+...+.++.++++-
T Consensus 14 ~~~e~l~~Li~-aGm~-------------v~RlNfSHGs~e~h~~~i~~vR~~~ 53 (352)
T PRK06739 14 NNKETLAQLIN-NGMK-------------IVRLNLSHGTHESHKDIIRLVKSLD 53 (352)
T ss_pred CCHHHHHHHHH-CCCC-------------EEEEECCCCCHHHHHHHHHHHHHhh
Confidence 44555556776 5544 4799999778888888888887653
No 408
>PF05596 Taeniidae_ag: Taeniidae antigen; InterPro: IPR008860 This family consists of several antigen proteins from Taenia and Echinococcus (tapeworm) species.
Probab=26.65 E-value=1.3e+02 Score=17.10 Aligned_cols=26 Identities=15% Similarity=0.037 Sum_probs=18.9
Q ss_pred HHHHHHHHhhcccCCChHHHHHHHHh
Q 042816 18 SVLAAAKKLARFSSVSAPSQNLLVSM 43 (163)
Q Consensus 18 ~~~~~~~~~~~~~~~s~~~q~~~~~~ 43 (163)
.+.+.+..+..++...+++|.++..+
T Consensus 11 ~~kK~i~~v~~FF~~DPlGqkIa~l~ 36 (64)
T PF05596_consen 11 SVKKWIEEVRNFFYEDPLGQKIAQLA 36 (64)
T ss_pred hHHHHHHHHHHHhccCchHHHHHHHH
Confidence 35556666666788999999977655
No 409
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=26.35 E-value=1.2e+02 Score=16.32 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 042816 51 QKFININRERLRRLYVKFVAGLR 73 (163)
Q Consensus 51 ~~~~~~~~~~~~~~~~~l~~~l~ 73 (163)
+..++.+++.|..+++=+.+++.
T Consensus 25 E~Eieelr~RY~~KRqPIldAie 47 (49)
T PF11629_consen 25 EQEIEELRQRYQAKRQPILDAIE 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhccHHHHHh
Confidence 78889999999999988888765
No 410
>PLN02461 Probable pyruvate kinase
Probab=26.15 E-value=2.5e+02 Score=23.26 Aligned_cols=44 Identities=16% Similarity=0.258 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHhh
Q 042816 103 GELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 103 ~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~ 160 (163)
++.+....|++ .|+ +-+|++++.-+.+...+.++.++++.+++.
T Consensus 34 ~~~e~l~~li~-aGm-------------~v~RlN~SHg~~e~h~~~i~~vr~~~~~~g 77 (511)
T PLN02461 34 RSVPMLEKLLR-AGM-------------NVARFNFSHGSHEYHQETLDNLRQAMANTG 77 (511)
T ss_pred CCHHHHHHHHH-cCC-------------CEEEEECCCCCHHHHHHHHHHHHHHHHHcC
Confidence 44556666766 554 458999998788888888999888877654
No 411
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=26.11 E-value=2.6e+02 Score=20.23 Aligned_cols=32 Identities=9% Similarity=0.140 Sum_probs=23.1
Q ss_pred EEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCC
Q 042816 87 YCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCH 126 (163)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~ 126 (163)
|+.+|+|. +.+..+..++.+ +||.+.|.....
T Consensus 127 fiivDlPp-------EEa~~~Rne~~k-~gislvpLvaPs 158 (268)
T KOG4175|consen 127 FIIVDLPP-------EEAETLRNEARK-HGISLVPLVAPS 158 (268)
T ss_pred eEeccCCh-------HHHHHHHHHHHh-cCceEEEeeCCC
Confidence 67778886 367778877755 999988765443
No 412
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=26.04 E-value=1.9e+02 Score=18.68 Aligned_cols=40 Identities=18% Similarity=0.400 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCccccCCceeEEEeecCCcc
Q 042816 54 ININRERLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLI 96 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~ 96 (163)
.....+.+..+.+-+.+.+.++|+.+...+-|. +|||...
T Consensus 48 ~~~~~~~~~~~~~~~i~~i~~~Gv~vKd~~~gL---vDFPa~~ 87 (120)
T PF09969_consen 48 LEAELEELEARLRELIDEIEELGVEVKDLDPGL---VDFPAKL 87 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcEEeCCccee---EeCCccc
Confidence 344456666667777777888899998877664 8888643
No 413
>PRK06354 pyruvate kinase; Provisional
Probab=25.73 E-value=2.6e+02 Score=23.65 Aligned_cols=44 Identities=16% Similarity=0.142 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHhh
Q 042816 103 GELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 103 ~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~ 160 (163)
++.+....|++ .|+ +-+|++++.-+.+...+-++.++++-+++.
T Consensus 21 ~~~e~l~~li~-aG~-------------~v~RlN~sHg~~e~~~~~i~~ir~~~~~~~ 64 (590)
T PRK06354 21 ESPEKLRQLIE-AGA-------------TTARLNFSHGDHEEHGARIKNIREASKKLG 64 (590)
T ss_pred CCHHHHHHHHH-cCC-------------CEEEEECCCCCHHHHHHHHHHHHHHHHHhC
Confidence 44556666666 454 458999998788888999999998876654
No 414
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=25.55 E-value=1.4e+02 Score=17.12 Aligned_cols=35 Identities=9% Similarity=-0.155 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec
Q 042816 104 ELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL 139 (163)
Q Consensus 104 ~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~ 139 (163)
-..+.+.|.+ +|..+...+.|...+.-++|+-+..
T Consensus 15 Va~vs~~la~-~g~nI~d~~q~~~~~~F~m~~~~~~ 49 (77)
T cd04893 15 LNELTRAVSE-SGCNILDSRMAILGTEFALTMLVEG 49 (77)
T ss_pred HHHHHHHHHH-cCCCEEEceeeEEcCEEEEEEEEEe
Confidence 4677776665 8999998887775444577777765
No 415
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=25.11 E-value=1.2e+02 Score=16.14 Aligned_cols=50 Identities=12% Similarity=0.152 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCeEEcCCCCCCCCCCce-EEEEEecCChhHHHHHHHHHHHH
Q 042816 104 ELELWDKLLNVAKVNVTPGSSCHCIEPGW-FSFSFTLLTEKDIHVVMERIRRI 155 (163)
Q Consensus 104 ~~~~~~~l~~~~gi~v~pg~~f~~~~~~~-iRi~~~~~~~~~l~~~~~~l~~~ 155 (163)
-.++...|.+ +|+.|..-..+......+ +-+.... +.+..+..++.|++.
T Consensus 14 l~~v~~~la~-~~inI~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~ 64 (66)
T PF01842_consen 14 LADVTEILAD-HGINIDSISQSSDKDGVGIVFIVIVV-DEEDLEKLLEELEAL 64 (66)
T ss_dssp HHHHHHHHHH-TTEEEEEEEEEEESSTTEEEEEEEEE-EGHGHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCHHHeEEEecCCCceEEEEEEEC-CCCCHHHHHHHHHcc
Confidence 4677776665 899987665554322122 2233333 667777777777654
No 416
>smart00340 HALZ homeobox associated leucin zipper.
Probab=25.11 E-value=1.1e+02 Score=15.79 Aligned_cols=31 Identities=10% Similarity=0.181 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc-CCccccC
Q 042816 52 KFININRERLRRLYVKFVAGLRQL-GIECAKS 82 (163)
Q Consensus 52 ~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~ 82 (163)
+++.+..+.+.+....+.+.++++ .++..+|
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLralk~~~~ 39 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELRALKLSPP 39 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence 667788888888888888888877 5666543
No 417
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=25.00 E-value=1.6e+02 Score=21.37 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhhhcCCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeE
Q 042816 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVN 118 (163)
Q Consensus 61 ~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~ 118 (163)
+.+...++.++..++|+.. .|.|| +++. +-.++.+.+++ .||-
T Consensus 162 ~leE~~avA~aca~~g~~l-EPTGG----Idl~---------Nf~~I~~i~ld-aGv~ 204 (236)
T TIGR03581 162 HLEEYAAVAKACAKHGFYL-EPTGG----IDLD---------NFEEIVQIALD-AGVE 204 (236)
T ss_pred cHHHHHHHHHHHHHcCCcc-CCCCC----ccHH---------hHHHHHHHHHH-cCCC
Confidence 3445666777777788865 88888 5665 44677777776 7776
No 418
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=24.63 E-value=1.2e+02 Score=23.84 Aligned_cols=68 Identities=13% Similarity=0.062 Sum_probs=29.8
Q ss_pred CceeEEEEEecCHHHHHHHHHhhc-ccCCChHHHHHHHHhcCCh-----HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLAR-FSSVSAPSQNLLVSMLSDT-----KFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
.|||.|.||. ++...++-... ....+.--+.+++.+|+.- +.-...++.+.+.=.+.++...+.+++.
T Consensus 367 hgWRTgAII~---EL~~Eiki~N~e~y~~s~~w~q~lt~Ller~q~~rseasq~~L~ew~~eRq~lR~~tK~~FN~q 440 (510)
T KOG2470|consen 367 HGWRTGAIIP---ELEREIKIQNTEQYRFSQTWLQILTGLLERMQAQRSEASQSVLDEWMKERQELRDTTKQMFNAQ 440 (510)
T ss_pred cccccccchH---HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3677776554 55555543332 1222222334455555421 1002223333444444555555666554
No 419
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=24.40 E-value=1.2e+02 Score=23.14 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=24.6
Q ss_pred ceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcC
Q 042816 6 GFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLS 45 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~ 45 (163)
|+-+|.+++ ++++.+.+..... .++.+++...++...|+
T Consensus 251 G~p~sav~~-~~~i~~~~~~~~~~~T~~g~p~~~aaa~~~l~ 291 (339)
T PF00202_consen 251 GLPISAVLG-SEEIMEAFQPGSHGSTFGGNPLSCAAALATLE 291 (339)
T ss_dssp TSSEEEEEE-EHHHHTTSCTTSSTCTTTT-HHHHHHHHHHHH
T ss_pred hhhcccccc-cchhhccccccccccccccchHhhhhhhhHHH
Confidence 577899999 8888877744332 24456666665555554
No 420
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=24.37 E-value=1.3e+02 Score=16.70 Aligned_cols=49 Identities=8% Similarity=0.156 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHH
Q 042816 102 KGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIR 153 (163)
Q Consensus 102 ~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~ 153 (163)
.+...+...|.. .|..... .....+..+.|+-++. .+.++.+..+..|.
T Consensus 16 ~~A~~~~~~l~~-~g~~~~~--~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 16 ENAERLLAKLKK-KGPDAYV--VQVSKGGPWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp HHHHHHHHHHHH-HT-------EEEEEETTCEEEEECCECTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCCCcce--EEEecCCceEEEEECCCCCHHHHHHHHHHHh
Confidence 367788888876 5765432 1222336778888865 36667777777776
No 421
>PF14527 LAGLIDADG_WhiA: WhiA LAGLIDADG-like domain; PDB: 3HYI_A 3HYJ_D.
Probab=24.31 E-value=1e+02 Score=18.76 Aligned_cols=63 Identities=11% Similarity=0.059 Sum_probs=28.7
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~ 154 (163)
++..|+.+|++-+.++.. ..+..+.+ ++++.|+...- . ...+...+-+- +.+++.+.+..|..
T Consensus 14 si~~P~~~YhLEi~~~~~------e~a~~l~~-lL~~~~i~~k~----~-~r~~~~~vYlK--~~e~I~dfL~~iGA 76 (93)
T PF14527_consen 14 SISDPKKSYHLEIRFNDE------EFAEQLKE-LLNKFGINAKI----I-KRKNKYVVYLK--DSEQISDFLKLIGA 76 (93)
T ss_dssp EE--TTT---EEEEES-H------HHHHHHHH-HHHHH----EE----E-EESSEEEEEE----HHHHHHHHHHTT-
T ss_pred eccCCCCceEEEEecCCH------HHHHHHHH-HHHHcCCCcee----e-eecCceEEEEc--CHHHHHHHHHHcCh
Confidence 566678889999888863 23344444 55546664321 1 11445555554 56787777777653
No 422
>PRK13281 succinylarginine dihydrolase; Provisional
Probab=23.91 E-value=3.7e+02 Score=21.54 Aligned_cols=33 Identities=12% Similarity=0.260 Sum_probs=23.5
Q ss_pred CCCceEEEEEecCChhHHH----------HHHHHHHHHHHHhhh
Q 042816 128 IEPGWFSFSFTLLTEKDIH----------VVMERIRRISQTCKS 161 (163)
Q Consensus 128 ~~~~~iRi~~~~~~~~~l~----------~~~~~l~~~~~~~~~ 161 (163)
++|.++|+.+.. +++++. ...++|..+++++.+
T Consensus 362 GGPACLRLRVvl-~~~El~Avnp~~lm~~~l~~~L~~wV~~hYR 404 (442)
T PRK13281 362 GGPACLRLRVVL-NEAELAAVNPAVLMNDALFDRLNAWVDRHYR 404 (442)
T ss_pred CCceeeeeeeeC-CHHHHHhcCCceecCHHHHHHHHHHHHHhcc
Confidence 458899999986 665543 557778888876543
No 423
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=23.88 E-value=2.2e+02 Score=19.30 Aligned_cols=54 Identities=15% Similarity=0.061 Sum_probs=27.5
Q ss_pred CCceeEEEeecCCcccCCChhhHHHHHHHHHH-----hcCeEEcCCCCCCCCC----CceEEEEEecC
Q 042816 82 SNGGFYCWADMSGLISSYSEKGELELWDKLLN-----VAKVNVTPGSSCHCIE----PGWFSFSFTLL 140 (163)
Q Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~gi~v~pg~~f~~~~----~~~iRi~~~~~ 140 (163)
+.+.+.+.+|..... .++.+|++.+.+ ...|...=|-.+|... ....++|++..
T Consensus 65 ~~~~~~i~Ld~~Gk~-----~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~~~~~~~~a~~~lSLS~m 127 (155)
T PF02590_consen 65 PPNDYVILLDERGKQ-----LSSEEFAKKLERWMNQGKSDIVFIIGGADGLSEEVRKRADEKLSLSKM 127 (155)
T ss_dssp HTTSEEEEE-TTSEE-------HHHHHHHHHHHHHTTS-EEEEEE-BTTB--HHHHHH-SEEEES-SS
T ss_pred cCCCEEEEEcCCCcc-----CChHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHHhhcCceEEEecC
Confidence 456667777765532 389999998765 1234433343444321 23588888864
No 424
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=23.26 E-value=4.1e+02 Score=21.55 Aligned_cols=134 Identities=17% Similarity=0.186 Sum_probs=69.7
Q ss_pred CceeEEEEEecCHHHHHHHHHhhc--ccCCChHH----HHHHHHhcCChH-HH----HHHHHHHHHHHHHHHHHHHHHhh
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPS----QNLLVSMLSDTK-FV----QKFININRERLRRLYVKFVAGLR 73 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~----q~~~~~~l~~~~-~~----~~~~~~~~~~~~~~~~~l~~~l~ 73 (163)
.|-..|++++ .+++++.+.+..- ...++... +..+..+++..+ +. -+-+....+...++...+.+.|+
T Consensus 291 gGp~~G~i~g-~~~~i~~l~~~~l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~ 369 (454)
T TIGR00474 291 GGPQAGIIVG-KKELIERLKKNPLTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRLK 369 (454)
T ss_pred CCCeEEEEEE-CHHHHHhhhhchhHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHHH
Confidence 3446899999 8888876554322 12233322 223333333211 10 02223334456667888888887
Q ss_pred hc---C--CccccCC----c---------eeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEE
Q 042816 74 QL---G--IECAKSN----G---------GFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSF 135 (163)
Q Consensus 74 ~~---g--~~~~~~~----~---------g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi 135 (163)
+. + +++.+.. | ++-+-++.. . .+..++.+.|.+ ....|.. ...++.+-+
T Consensus 370 ~~~~~~~~~~~~~~~~~~ggg~~p~~~l~~~~v~~~~~-~------~~~~~l~~~lr~-~~~~ii~-----r~~~~~~~l 436 (454)
T TIGR00474 370 AALGPGFELEIVPGLSQVGGGSLPDERLPSYAVTLTPD-G------LSAEKLEARLRE-LPPPIIG-----RIEDDRFLL 436 (454)
T ss_pred hhccCCceEEEEEcCCcccCCCCcCCCCCeEEEEEecC-C------CCHHHHHHHHhc-CCCCEEE-----EEECCEEEE
Confidence 63 2 2222222 1 111222211 1 267888887754 5533332 123688999
Q ss_pred EEecCChhHHHHHHHHH
Q 042816 136 SFTLLTEKDIHVVMERI 152 (163)
Q Consensus 136 ~~~~~~~~~l~~~~~~l 152 (163)
.+.++.+++++..++.+
T Consensus 437 d~r~~~~~~~~~~~~~~ 453 (454)
T TIGR00474 437 DLRTLLEDEEELLIEAL 453 (454)
T ss_pred EeCcCCHHHHHHHHHHh
Confidence 99888878877766654
No 425
>PLN02913 dihydrofolate synthetase
Probab=23.20 E-value=3.2e+02 Score=22.48 Aligned_cols=56 Identities=11% Similarity=0.140 Sum_probs=37.7
Q ss_pred hhhHHHHHHHHHHhcCeEE----cCCCCCCCCCCceEEEE--EecCChhHHHHHHHHHHHHHHHh
Q 042816 101 EKGELELWDKLLNVAKVNV----TPGSSCHCIEPGWFSFS--FTLLTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 101 ~~~~~~~~~~l~~~~gi~v----~pg~~f~~~~~~~iRi~--~~~~~~~~l~~~~~~l~~~~~~~ 159 (163)
+.+...+...+++.+|..| .|. .. ...+.|||+ =..++++++..++..+.+..++.
T Consensus 86 KGSt~a~l~~iL~~aG~~vG~fTSPH--l~-~~~ERi~in~~g~~is~~~~~~~~~~v~~~~~~~ 147 (510)
T PLN02913 86 KGSTAAFLSNILRAQGYSVGCYTSPH--LR-SIRERISVGKLGKPVSTNTLNDLFHGIKPILDEA 147 (510)
T ss_pred hHHHHHHHHHHHHhcCCCeEEECCCC--Cc-eeceEEEECCCCCcCCHHHHHHHHHHHHHHHHHh
Confidence 3477888888888676554 332 11 125677777 44468889999998888777654
No 426
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=23.07 E-value=1.6e+02 Score=16.70 Aligned_cols=50 Identities=14% Similarity=0.209 Sum_probs=29.4
Q ss_pred HHHHHHHHhhhcCCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcC
Q 042816 64 LYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAK 116 (163)
Q Consensus 64 ~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 116 (163)
..+.+.+.|+.+|+++...++. .+.+.+|.+- .+.....++++..++-+|
T Consensus 20 ~~~~i~~~L~~lg~~~~~~~~~-~~~v~vP~~R--~Di~~~~DliEEiaR~yG 69 (70)
T PF03484_consen 20 SPEEIIKILKRLGFKVEKIDGD-TLEVTVPSYR--FDIEHEEDLIEEIARIYG 69 (70)
T ss_dssp -HHHHHHHHHHTT-EEEE-CTT-EEEEEEETTS--TT-SSHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCCEEEECCCC-EEEEEcCCCc--CCcCcccHHHHHHHHHhC
Confidence 3456778888999998874333 2344555431 233467888888776544
No 427
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=23.03 E-value=3.8e+02 Score=21.16 Aligned_cols=21 Identities=10% Similarity=0.175 Sum_probs=16.2
Q ss_pred eEEEEEecCHHHHHHHHHhhc
Q 042816 8 RISVIYSYNNSVLAAAKKLAR 28 (163)
Q Consensus 8 RiG~~i~~~~~~~~~~~~~~~ 28 (163)
--|.+++.++++.+.++..+.
T Consensus 190 EGGav~tnd~ela~k~~~lr~ 210 (374)
T COG0399 190 EGGAVVTNDEELAEKARSLRN 210 (374)
T ss_pred CceEEEeCCHHHHHHHHHHHH
Confidence 568888878889888876654
No 428
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=23.02 E-value=4e+02 Score=21.40 Aligned_cols=69 Identities=6% Similarity=-0.094 Sum_probs=39.1
Q ss_pred ceeEEEeecCCcccCC--ChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 84 GGFYCWADMSGLISSY--SEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 84 ~g~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
..|-+|..-|..+..+ +..+...|.+ +++++|+-+.+-.. . ..|+ ++++..+++..+..++.|.+.++.
T Consensus 156 ~afqiF~~npr~w~~~~~~~~~~~~f~~-~~~~~gi~~~~i~~---H-apYl-INLASpd~e~rekSv~~~~~eL~r 226 (413)
T PTZ00372 156 QAFALFLKNQRTWNSPPLSDETIDKFKE-NCKKYNYDPKFILP---H-GSYL-INLANPDKEKREKSYDAFLDDLQR 226 (413)
T ss_pred CEEEEEcCCCccCCCCCCCHHHHHHHHH-HHHHcCCCcceEEe---e-cCce-ecCCCCCHHHHHHHHHHHHHHHHH
Confidence 3456777767655333 2234445555 45568775332111 1 2366 888875555567778888776654
No 429
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=22.88 E-value=4.2e+02 Score=21.55 Aligned_cols=88 Identities=13% Similarity=0.007 Sum_probs=50.2
Q ss_pred CCCCceeEEEEEecCH-HHHHHHHHhhccc----------CCChHH-----HHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNN-SVLAAAKKLARFS----------SVSAPS-----QNLLVSMLSDTKFVQKFININRERLRRLY 65 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~-~~~~~~~~~~~~~----------~~s~~~-----q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 65 (163)
||.+=+-+||+...++ ++.+.+.-...++ ..+.++ |.+....+. .+-+.++.+...+..
T Consensus 277 ~g~aP~~~G~il~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG-----~eGy~~l~~~~~~~a 351 (460)
T COG0076 277 YGLAPIGCGVVLFRDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLG-----REGYRKLLDRTLELA 351 (460)
T ss_pred ccCCCCCceEEEEECHHHhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHhC-----HhHHHHHHHHHHHHH
Confidence 5666678899999777 4555444222211 112222 222223332 223466777777889
Q ss_pred HHHHHHhhhcC-CccccCCceeEEEeecCC
Q 042816 66 VKFVAGLRQLG-IECAKSNGGFYCWADMSG 94 (163)
Q Consensus 66 ~~l~~~l~~~g-~~~~~~~~g~~~~~~~~~ 94 (163)
+++.+.+++.| +++..+....-+.+++++
T Consensus 352 ~~la~~l~~~~~~e~~~~p~l~~V~fr~~~ 381 (460)
T COG0076 352 RYLAEELEKLGDFELVNEPELPIVAFRLKD 381 (460)
T ss_pred HHHHHHHHhCCCcEeecCCccceEEEEcCC
Confidence 99999999985 887763333344456654
No 430
>PF01995 DUF128: Domain of unknown function DUF128; InterPro: IPR002846 These archaebacterial proteins have no known function. The domain is found duplicated in some sequences.; PDB: 3NEK_B.
Probab=22.68 E-value=1.6e+02 Score=21.65 Aligned_cols=29 Identities=10% Similarity=0.290 Sum_probs=25.3
Q ss_pred CceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 130 PGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 130 ~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
++-+=++++..+.++++++++.++++.++
T Consensus 23 ~G~VivN~s~v~k~d~~~al~i~~~v~~~ 51 (236)
T PF01995_consen 23 KGKVIVNISYVDKEDLDEALEIFKEVFKA 51 (236)
T ss_dssp B-EEEEEEEEEEGGGHHHHHHHHHHHHHT
T ss_pred cccEEEEEEEecHHHHHHHHHHHHHHHHc
Confidence 78899999988999999999999998864
No 431
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=22.60 E-value=4.2e+02 Score=21.97 Aligned_cols=39 Identities=10% Similarity=0.099 Sum_probs=23.9
Q ss_pred eEEcCCCCCC--CCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 117 VNVTPGSSCH--CIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 117 i~v~pg~~f~--~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
.+..+-.+|. ...++.+=++|. ++++-.++.+++.+-+.
T Consensus 100 ~y~q~r~ffhtFegddc~aGLnF~--~E~EA~~F~k~V~~r~~ 140 (569)
T KOG3671|consen 100 EYRQPRTFFHTFEGDDCQAGLNFA--SEEEAQKFRKKVQDRIC 140 (569)
T ss_pred eeccCccceeeeccccceeeeccc--CHHHHHHHHHHHHHHhh
Confidence 3344444443 234677778877 77787777777766443
No 432
>PF10229 DUF2246: Uncharacterized conserved protein (DUF2246); InterPro: IPR019362 This entry represents conserved proteins found in the metazoa but absent from fungi. They are all approximately 300 residues in length and have no known function.
Probab=22.37 E-value=2.7e+02 Score=21.03 Aligned_cols=84 Identities=13% Similarity=0.002 Sum_probs=54.3
Q ss_pred CceeEEEEEecCHHHHHHHHHhhc--ccC-----CChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLAR--FSS-----VSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG- 76 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~--~~~-----~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g- 76 (163)
..+.+....+ |+-+.+.+...-. ... +-.+.|..-..+-...+.++...++.++.+-.-...++..|.+.|
T Consensus 125 ~~ve~si~~C-P~ll~~~~~~lFP~~~~~~~~ltVl~v~qkt~~dl~~~s~~vE~Ere~l~e~Fv~~A~~ic~~L~~~GY 203 (278)
T PF10229_consen 125 SNVECSIQEC-PKLLRKNFEELFPSRDWPSSPLTVLTVSQKTNNDLSKWSEEVEQEREQLLEKFVLFAKEICDALRSQGY 203 (278)
T ss_pred CceEEEEEcC-CHHHHHHHHHhCCCCcCCCCceEEEEEeccCCchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 4455555666 7777778877765 222 222334433233333333477778888888888899999999887
Q ss_pred -CccccCCceeEEE
Q 042816 77 -IECAKSNGGFYCW 89 (163)
Q Consensus 77 -~~~~~~~~g~~~~ 89 (163)
.+++.|..|.-++
T Consensus 204 WADFIDP~SG~p~~ 217 (278)
T PF10229_consen 204 WADFIDPFSGRPYF 217 (278)
T ss_pred eeeeecCCCCcccc
Confidence 6777888876544
No 433
>KOG1957 consensus DNA topoisomerase III beta [Replication, recombination and repair]
Probab=22.34 E-value=65 Score=26.06 Aligned_cols=54 Identities=19% Similarity=0.322 Sum_probs=36.4
Q ss_pred eEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHH
Q 042816 86 FYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIR 153 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~ 153 (163)
+.+|+|+.+ ..++++-+.++.-+-.+. .. +.--.|-.|+.+++.++.++++.|.
T Consensus 108 ~vlwldcdk--------egenicfevidav~~~m~-----~~-~~~tyra~fsaitekdi~~am~~lg 161 (555)
T KOG1957|consen 108 LVLWLDCDK--------EGENICFEVIDAVKCVMN-----RS-DFKTYRAHFSAITEKDIKKAMRNLG 161 (555)
T ss_pred EEEEeecCC--------CcCeeehhhhhhhhhhhc-----cC-cceEEeeeeccccHHHHHHHHHhcC
Confidence 458999986 446777666663333332 11 1223788888889999999998875
No 434
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=22.20 E-value=2.9e+02 Score=19.37 Aligned_cols=49 Identities=8% Similarity=0.233 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHh
Q 042816 105 LELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 105 ~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~ 159 (163)
..+...+. ..++-+.|-. ..+.+|+.+..++.|.=.+.++.+.+..++.
T Consensus 76 ~~I~kAI~-~s~lgl~P~~-----dg~~Iri~iP~lT~E~R~elvK~~k~~~E~a 124 (185)
T PRK00083 76 KAIEKAIR-ASDLGLNPSN-----DGTVIRLPIPPLTEERRKELVKQVKKEAEEA 124 (185)
T ss_pred HHHHHHHH-HCCCCCCccc-----CCCEEEecCCCCCHHHHHHHHHHHHHHHHHH
Confidence 44444444 4678777743 2578999998878777667777766665543
No 435
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=22.18 E-value=28 Score=19.34 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=24.8
Q ss_pred EEEecCHHHHHHHHHhhc-ccCCChHHHHHHHHhcCCh
Q 042816 11 VIYSYNNSVLAAAKKLAR-FSSVSAPSQNLLVSMLSDT 47 (163)
Q Consensus 11 ~~i~~~~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~ 47 (163)
|++- +|++++.+.+-.. ..+.+...|.+....+++.
T Consensus 8 YLv~-nPevl~kl~~g~asLIGv~~~e~~aIi~~F~~~ 44 (57)
T PF05952_consen 8 YLVQ-NPEVLEKLKEGEASLIGVDKDEQKAIIDAFKDE 44 (57)
T ss_pred HHHH-ChHHHHHHHcCCeeEecCCHHHHHHHHHHHccc
Confidence 4444 7777777776665 3677777777777777654
No 436
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=22.17 E-value=1.8e+02 Score=21.15 Aligned_cols=47 Identities=21% Similarity=0.290 Sum_probs=28.6
Q ss_pred HHHHHHHhhhcCCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCC
Q 042816 65 YVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCH 126 (163)
Q Consensus 65 ~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~ 126 (163)
.+..+++|+++|+.+.. +++-. .+..++...|.+...|+|..|..|.
T Consensus 51 v~k~~~~l~~lg~~v~~--------L~l~~-------~~~~~Ie~~l~~~d~IyVgGGNTF~ 97 (224)
T COG3340 51 VEKVRNALAKLGLEVSE--------LHLSK-------PPLAAIENKLMKADIIYVGGGNTFN 97 (224)
T ss_pred HHHHHHHHHHcCCeeee--------eeccC-------CCHHHHHHhhhhccEEEECCchHHH
Confidence 34456677777766553 22222 1556777777776677777776664
No 437
>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]
Probab=22.04 E-value=5.4e+02 Score=22.49 Aligned_cols=112 Identities=10% Similarity=0.019 Sum_probs=62.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCccccCCc--eeEEEeecCCcccCCChhhHHHHHHHHHHh
Q 042816 38 NLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIECAKSNG--GFYCWADMSGLISSYSEKGELELWDKLLNV 114 (163)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 114 (163)
-+..+++..... ...-+.---+.+++.+.|+.+ .+-+....| +==+.+|+.+.....++ +..+++++|.+
T Consensus 804 waYikmMG~~GL-----~~as~~AiLNaNYMakRLe~hYkil~~~~~~~vaHEFIlD~r~fK~~agi-eavDvAKRL~D- 876 (1001)
T KOG2040|consen 804 WAYIKMMGSGGL-----KDASKIAILNANYMAKRLESHYKILFRGENGLVAHEFILDLRPFKKTAGI-EAVDVAKRLMD- 876 (1001)
T ss_pred HHHHHHhccccc-----chhhHHHhhhhHHHHHHHhhccceeEecCCcceeeeeeeechhhccccCC-cHHHHHHHHHh-
Confidence 355566655322 333344445778888999887 444444433 11133455543222333 78999999987
Q ss_pred cCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHHHh
Q 042816 115 AKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 115 ~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~ 159 (163)
+|..-..-++-. ++.+-|--.. .+.++++.+.+.+..+-+++
T Consensus 877 YgFHaPTmswPV---~gtLMIEPTESE~k~ElDRfcdAliSIreEI 919 (1001)
T KOG2040|consen 877 YGFHAPTMSWPV---AGTLMIEPTESEDKAELDRFCDALISIREEI 919 (1001)
T ss_pred ccCCCCcccccc---CCceEeccCccccHHHHHHHHHHHHHHHHHH
Confidence 998865444433 4455555432 25567777777665554443
No 438
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=22.03 E-value=1.6e+02 Score=19.24 Aligned_cols=32 Identities=16% Similarity=0.206 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCccccCCce
Q 042816 54 ININRERLRRLYVKFVAGLRQLGIECAKSNGG 85 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g 85 (163)
.....+.+..-.+.+.+.|.+.|++...+.|+
T Consensus 61 ~~~~~~g~~~i~~~l~~~L~~~Gv~~i~~~g~ 92 (137)
T cd00446 61 LKNLVEGVEMTLKQLLDVLEKHGVEKIEPEGE 92 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEECCCCC
Confidence 35566677777788888888889999888875
No 439
>PRK13578 ornithine decarboxylase; Provisional
Probab=22.00 E-value=5.4e+02 Score=22.47 Aligned_cols=48 Identities=8% Similarity=0.024 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 104 ELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 104 ~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
...+.++|.+ +||.+--.+.+.. -+-++++. +.++++..++.|.++-+
T Consensus 517 g~~l~~~L~e-~gI~~E~~d~~~v----L~l~s~g~-t~~~~~~Lv~aL~~f~~ 564 (720)
T PRK13578 517 ATILANYLRE-NGIVPEKCDLNSI----LFLLTPAE-DMAKLQQLVAMLARFEK 564 (720)
T ss_pred HHHHHHHHHH-cCCEEEecCCCeE----EEEeCCCC-CHHHHHHHHHHHHHHHH
Confidence 5778887766 5999865443331 24445554 76777777777766533
No 440
>PHA03073 late transcription factor VLTF-2; Provisional
Probab=21.80 E-value=1.3e+02 Score=20.15 Aligned_cols=34 Identities=18% Similarity=0.077 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec
Q 042816 103 GELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL 139 (163)
Q Consensus 103 ~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~ 139 (163)
+-.++...|.++.||+ |..|.....+.+++++..
T Consensus 115 ~V~niIN~LrnkegvY---G~C~~~e~~~~i~isLrs 148 (150)
T PHA03073 115 EVINIINLLRNKEGVY---GSCFYKENDQSIDISLRS 148 (150)
T ss_pred HHHHHHHhhhhhcCcc---ceEEEeeCCcEEEEEeee
Confidence 5567778887778988 777776667889998853
No 441
>PRK09790 hypothetical protein; Reviewed
Probab=21.77 E-value=75 Score=18.42 Aligned_cols=12 Identities=33% Similarity=0.506 Sum_probs=8.1
Q ss_pred CCCceeEEEEEe
Q 042816 3 SLPGFRISVIYS 14 (163)
Q Consensus 3 ~~~G~RiG~~i~ 14 (163)
++-|-|+||++-
T Consensus 20 nlegk~igyvik 31 (91)
T PRK09790 20 NLEGKRIGYVIK 31 (91)
T ss_pred cccCcEEEEEEE
Confidence 456777777765
No 442
>PF08848 DUF1818: Domain of unknown function (DUF1818); InterPro: IPR014947 This entry represents a small family of uncharacterised cyanobacterial proteins. ; PDB: 2IT9_A 2NVN_A.
Probab=21.32 E-value=59 Score=20.96 Aligned_cols=7 Identities=43% Similarity=1.099 Sum_probs=4.9
Q ss_pred CceeEEE
Q 042816 5 PGFRISV 11 (163)
Q Consensus 5 ~G~RiG~ 11 (163)
+|+|+||
T Consensus 5 ~GWRLg~ 11 (117)
T PF08848_consen 5 PGWRLGW 11 (117)
T ss_dssp TTEEEEE
T ss_pred CCeEEeE
Confidence 5777777
No 443
>cd00219 ToxGAP GTPase-activating protein (GAP) domain found in bacterial cytotoxins, ExoS, SptP, and YopE. Part of protein secretion system; stimulates Rac1- dependent cytoskeletal changes that promote bacterial internalization.
Probab=21.17 E-value=38 Score=21.83 Aligned_cols=56 Identities=11% Similarity=0.056 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHhh
Q 042816 103 GELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 103 ~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~ 160 (163)
...+.+..|++ ..|...|-+-|+.-+...-++--+. ++|++.++++.|..++++.+
T Consensus 59 q~~~~A~~lL~-~~igGipfqQWGT~Gg~as~~V~~A-s~e~L~~a~~~lh~~~~eva 114 (120)
T cd00219 59 QLRDQATRLLN-TQIGGIPFSQWGTCGGAASELVDSA-SPEQLTEAAKQLHGLMQEVA 114 (120)
T ss_pred HHHHHHHHHHh-ccccceeHHHhhccchHHHHHHHhC-CHHHHHHHHHHHHHHHHHHH
Confidence 45788888987 8898888777764322111222233 77899999999998887765
No 444
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth []. Periplasmic binding proteins of a new family, particularly well represented in this organism (and more generally in beta-proteobacteria), have been called Bug receptors []. They adopt a characteristic Venus flytrap fold with two globular domains bisected by a ligand-binding cleft. The family is specific for carboxylated solutes, with a characteristic mode of binding involving two highly conserved beta strand-beta turn-alpha helix motifs originating from each domain. These two motifs form hydrogen bonds with a carboxylate group of the ligand, both directly and via conserved water molecules, and have thus been termed the carboxylate pincers. Domain 1 recognises the ligand and the carboxylate group serves as an initial anchoring point. Domain 2 discriminates between productively and non-productively bound ligands as proper interactions with this domain is needed for the of the closed conformation []. BugE has a glutamate bound ligand. No charged residues are involved in glutamate binding by BugE, unlike what has been described for all glutamate receptors reported so far. The Bug architecture is highly conserved despite limited sequence identity [].; GO: 0030288 outer membrane-bounded periplasmic space; PDB: 2QPQ_C 2DVZ_A 2F5X_A.
Probab=21.13 E-value=1.9e+02 Score=21.39 Aligned_cols=14 Identities=0% Similarity=0.050 Sum_probs=9.4
Q ss_pred CHHHHHHHHHhhcc
Q 042816 16 NNSVLAAAKKLARF 29 (163)
Q Consensus 16 ~~~~~~~~~~~~~~ 29 (163)
|+++++.+.....-
T Consensus 215 p~~~~~~l~~a~~~ 228 (274)
T PF03401_consen 215 PDEIVDKLADAIKK 228 (274)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 67888887776653
No 445
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]
Probab=20.33 E-value=4.7e+02 Score=21.13 Aligned_cols=57 Identities=11% Similarity=0.097 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHhcCeEEcCC-CCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 102 KGELELWDKLLNVAKVNVTPG-SSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 102 ~~~~~~~~~l~~~~gi~v~pg-~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
.++..|.+.++.+.|..|--= |.+-..-.+.+||+=-.++++++..+++++.++...
T Consensus 56 GSt~afl~siL~~aG~~VG~yTSPHL~~~~ERI~ing~~Isd~~~~~~~~~ve~~~~~ 113 (427)
T COG0285 56 GSTCAFLESILREAGYKVGVYTSPHLLSFNERIRINGEPISDEELAAAFERVEEAAGS 113 (427)
T ss_pred hhHHHHHHHHHHHcCCCceEECCCccCccceEEEECCEECCHHHHHHHHHHHHHHhcc
Confidence 478888888888666554210 111111256777776667999999999988877653
Done!