BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042817
(922 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 4/133 (3%)
Query: 511 GIEKWKGVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLS 570
GI+ V+ ++L NK+ ++S +L L L N+L ++ F + +LK L L
Sbjct: 58 GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117
Query: 571 NNFSLREFPPGI-SKLISLQYLNLSSTGIRVLPEEL-KALKDLSYLNMERTSFVRRIPRQ 628
N L+ P G+ KL +L YLNL+ ++ LP+ + L +L+ L++ ++ +P
Sbjct: 118 EN-QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEG 175
Query: 629 LISNFPLLRVLRM 641
+ L+ LR+
Sbjct: 176 VFDKLTQLKDLRL 188
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 4/135 (2%)
Query: 511 GIEKWKGVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLS 570
GI+ V+ ++L NK+ ++S +L L L N+L ++ F + +LK L L
Sbjct: 58 GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117
Query: 571 NNFSLREFPPGI-SKLISLQYLNLSSTGIRVLPEEL-KALKDLSYLNMERTSFVRRIPRQ 628
N L+ P G+ KL +L YL L ++ LP+ + L +L+ L+++ ++ +P
Sbjct: 118 EN-QLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQ-LQSLPEG 175
Query: 629 LISNFPLLRVLRMLD 643
+ L+ L + D
Sbjct: 176 VFDKLTQLKQLSLND 190
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 540 LLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGI-SKLISLQYLNLSSTGI 598
L L+L N+L ++ F + SL LNLS N L+ P G+ KL L+ L L++ +
Sbjct: 54 LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKELALNTNQL 112
Query: 599 RVLP----EELKALKDL 611
+ LP ++L LKDL
Sbjct: 113 QSLPDGVFDKLTQLKDL 129
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 28/124 (22%)
Query: 519 KRMSLMNNKIRNLSEPA--TCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLR 576
+R+ L N+I ++ + C +L L+L +N L+ I A F + L+ L+LS+N LR
Sbjct: 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 577 ------------------------EFPPGISK-LISLQYLNLSSTGIRVLPEE-LKALKD 610
E PG+ + L +LQYL L ++ LP++ + L +
Sbjct: 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154
Query: 611 LSYL 614
L++L
Sbjct: 155 LTHL 158
Score = 36.6 bits (83), Expect = 0.060, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 5/123 (4%)
Query: 505 GLTE-APGIEK-WKGVKRMSLMNNKIRNLSEPA--TCPHLLTLFLQNNRLSNITANFFQF 560
GL E PG+ + ++ + L +N ++ L + +L LFL NR+S++ F+
Sbjct: 116 GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG 175
Query: 561 MPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSSTGIRVLP-EELKALKDLSYLNMERT 619
+ SL L L N P L L L L + + LP E L L+ L YL +
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Query: 620 SFV 622
+V
Sbjct: 236 PWV 238
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 28/124 (22%)
Query: 519 KRMSLMNNKIRNLSEPA--TCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLR 576
+R+ L N+I ++ + C +L L+L +N L+ I A F + L+ L+LS+N LR
Sbjct: 34 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 93
Query: 577 ------------------------EFPPGISK-LISLQYLNLSSTGIRVLPEE-LKALKD 610
E PG+ + L +LQYL L ++ LP++ + L +
Sbjct: 94 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 153
Query: 611 LSYL 614
L++L
Sbjct: 154 LTHL 157
Score = 36.6 bits (83), Expect = 0.060, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 5/123 (4%)
Query: 505 GLTE-APGIEK-WKGVKRMSLMNNKIRNLSEPA--TCPHLLTLFLQNNRLSNITANFFQF 560
GL E PG+ + ++ + L +N ++ L + +L LFL NR+S++ F+
Sbjct: 115 GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG 174
Query: 561 MPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSSTGIRVLP-EELKALKDLSYLNMERT 619
+ SL L L N P L L L L + + LP E L L+ L YL +
Sbjct: 175 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Query: 620 SFV 622
+V
Sbjct: 235 PWV 237
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 11/121 (9%)
Query: 539 HLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGI-SKLISLQYLNLSSTG 597
+L TL++ +N+L + F + +L L L N L+ PP + L L YL+L
Sbjct: 86 NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNE 144
Query: 598 IRVLP----EELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHG 653
++ LP ++L +LK+L N + ++R+P L+ L+ LD L+R G
Sbjct: 145 LQSLPKGVFDKLTSLKELRLYNNQ----LKRVPEGAFDKLTELKTLK-LDNNQLKRVPEG 199
Query: 654 S 654
+
Sbjct: 200 A 200
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 522 SLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPG 581
+L +N R+L +L LFL NR+ ++ + F+ + SL L L N R P
Sbjct: 142 ALPDNTFRDLG------NLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHA 195
Query: 582 ISKLISLQYLNLSSTGIRVLPEE-LKALKDLSYLNMERTSFV 622
L L L L + + +LP E L L+ L YL + +V
Sbjct: 196 FRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPWV 237
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 28/124 (22%)
Query: 519 KRMSLMNNKIRNLSEPA--TCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLR 576
+R+ L N+I + + +C +L L+L +N L+ I A F + L+ L+LS+N LR
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 577 ------------------------EFPPGISK-LISLQYLNLSSTGIRVLPEE-LKALKD 610
E PG+ + L +LQYL L ++ LP+ + L +
Sbjct: 94 VVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGN 153
Query: 611 LSYL 614
L++L
Sbjct: 154 LTHL 157
Score = 31.2 bits (69), Expect = 2.9, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 543 LFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSSTG-IRVL 601
+FL NR+S + A FQ +L +L L +N + L L+ L+LS +RV+
Sbjct: 36 IFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVV 95
Query: 602 -PEELKALKDLSYLNMER 618
P + L L L+++R
Sbjct: 96 DPTTFRGLGHLHTLHLDR 113
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 37.0 bits (84), Expect = 0.050, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 525 NNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISK 584
+N I +++ P L +L+L NN++++IT + L L+L +N +R P +++
Sbjct: 119 HNGISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDN-QIRRIVP-LAR 174
Query: 585 LISLQYLNLSSTGIRVLPEELKALKDLSYLNM 616
L LQ L LS I L L+ LK+L L +
Sbjct: 175 LTKLQNLYLSKNHISDL-RALRGLKNLDVLEL 205
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 37.0 bits (84), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 8/137 (5%)
Query: 488 ASEIEKEKEEFFVHAGVGLTEAPGIEKWKGVKRMSLMNNKIRNLSEPA--TCPHLLTLFL 545
+E+ EF V G+ +K +++++ NNKI ++ E A + + L
Sbjct: 34 TAELRLNNNEFTVLEATGI-----FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88
Query: 546 QNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSSTGI-RVLPEE 604
+NRL N+ F+ + SLK L L +N L S++ L+L I V P
Sbjct: 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA 148
Query: 605 LKALKDLSYLNMERTSF 621
L LS LN+ F
Sbjct: 149 FDTLHSLSTLNLLANPF 165
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 543 LFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSSTGIRVLP 602
L L N ++ NI+AN F++ L L L+ N SL E P I L +L+ L+LS + LP
Sbjct: 229 LDLSNLQIFNISANIFKY-DFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLP 286
Query: 603 EELKALKDLSYL 614
EL + L Y
Sbjct: 287 AELGSCFQLKYF 298
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 521 MSLMNNKIRNLSEPATCPHLLT-LFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFP 579
+ L N +I N+S LT L+L N L+ + A + + +L+VL+LS+N L P
Sbjct: 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEI-KNLSNLRVLDLSHN-RLTSLP 286
Query: 580 PGISKLISLQYLNLSSTGIRVLPEELKALKDLSYLNME 617
+ L+Y + LP E L +L +L +E
Sbjct: 287 AELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVE 324
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 20/122 (16%)
Query: 538 PHLLTLFLQNNRLSNI--TANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSS 595
P L TL L N L ++ T + +L L++S N + P +++LNLSS
Sbjct: 387 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSS 445
Query: 596 TGIRV----LPEELKALKDLSYLNMERTS-FVRRIPRQLISN-----------FPLLRVL 639
TGIRV +P+ L+ L D+S N++ S F+ R+ IS FP+L V+
Sbjct: 446 TGIRVVKTCIPQTLEVL-DVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVM 504
Query: 640 RM 641
++
Sbjct: 505 KI 506
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 20/122 (16%)
Query: 538 PHLLTLFLQNNRLSNI--TANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSS 595
P L TL L N L ++ T + +L L++S N + P +++LNLSS
Sbjct: 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSS 419
Query: 596 TGIRV----LPEELKALKDLSYLNMERTS-FVRRIPRQLISN-----------FPLLRVL 639
TGIRV +P+ L+ L D+S N++ S F+ R+ IS FP+L V+
Sbjct: 420 TGIRVVKTCIPQTLEVL-DVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVM 478
Query: 640 RM 641
++
Sbjct: 479 KI 480
>pdb|1KOH|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 518 VKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNI--TANFFQFMPSLKVLNLSNN 572
+ R S M +R + E P LL+L L NNRL + ++ Q P+LK+LNLS N
Sbjct: 152 LNRRSSMAATLRIIEE--NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN 206
>pdb|3RW6|A Chain A, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW6|B Chain B, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW7|A Chain A, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|B Chain B, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|C Chain C, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|D Chain D, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
Length = 267
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 518 VKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNI--TANFFQFMPSLKVLNLSNN 572
+ R S M +R + E P LL+L L NNRL + ++ Q P+LK+LNLS N
Sbjct: 152 LNRRSCMAATLRIIEE--NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN 206
>pdb|1KOO|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 518 VKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNI--TANFFQFMPSLKVLNLSNN 572
+ R S M +R + E P LL+L L NNRL + ++ Q P+LK+LNLS N
Sbjct: 152 LNRRSSMAATLRIIEE--NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN 206
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 13/89 (14%)
Query: 546 QNNRLSNITANFFQFMPSLKVLNL--SNNFSLREFPPGISKLISLQYLNLSSTGIRVLPE 603
QN+ L I A+ F +P L + + +NN L P L +LQYL +S+TGI+ LP+
Sbjct: 63 QNDVLEVIEADVFSNLPKLHEIRIEKANNL-LYINPEAFQNLPNLQYLLISNTGIKHLPD 121
Query: 604 --ELKALK--------DLSYLNMERTSFV 622
++ +L+ +++ +ER SFV
Sbjct: 122 VHKIHSLQKVLLDIQDNINIHTIERNSFV 150
>pdb|1FT8|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|C Chain C, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|D Chain D, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|E Chain E, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 518 VKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNI--TANFFQFMPSLKVLNLSNN 572
+ R S M +R + E P LL+L L NNRL + ++ Q P+LK+LNLS N
Sbjct: 146 LNRRSCMAATLRIIEE--NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN 200
>pdb|1FO1|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FO1|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 518 VKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNI--TANFFQFMPSLKVLNLSNN 572
+ R S M +R + E P LL+L L NNRL + ++ Q P+LK+LNLS N
Sbjct: 146 LNRRSCMAATLRIIEE--NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN 200
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 538 PHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSSTG 597
P L LQNN+++ I F+ + +L L L NN + P + L+ L+ L LS
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 598 IRVLPEEL-KALKDL 611
++ LPE++ K L++L
Sbjct: 112 LKELPEKMPKTLQEL 126
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 13/89 (14%)
Query: 546 QNNRLSNITANFFQFMPSLKVLNL--SNNFSLREFPPGISKLISLQYLNLSSTGIRVLPE 603
QN+ L I A+ F +P L + + +NN L P L +LQYL +S+TGI+ LP+
Sbjct: 63 QNDVLEVIEADVFSNLPKLHEIRIEKANNL-LYINPEAFQNLPNLQYLLISNTGIKHLPD 121
Query: 604 --ELKALK--------DLSYLNMERTSFV 622
++ +L+ +++ +ER SFV
Sbjct: 122 VHKIHSLQKVLLDIQDNINIHTIERNSFV 150
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 538 PHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSSTG 597
P L LQNN+++ I F+ + +L L L NN + P + L+ L+ L LS
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 598 IRVLPEEL-KALKDL 611
++ LPE++ K L++L
Sbjct: 112 LKELPEKMPKTLQEL 126
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 69/162 (42%), Gaps = 10/162 (6%)
Query: 466 LEEDADDFVELHDVVRDMALWIAS--EIEKEKEEFFVHAGVGLTEAPGIEKWKGVKRMSL 523
+ +D V V +AL + S E E ++ LT P + K +SL
Sbjct: 1 MSQDRKPIVGSFHFVCALALIVGSMTPFSNELESMVDYSNRNLTHVPK-DLPPRTKALSL 59
Query: 524 MNNKIRNLSEP--ATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPG 581
N I L P + L L L +NR+ ++ + F F L+ L++S+N R
Sbjct: 60 SQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN---RLQNIS 116
Query: 582 ISKLISLQYLNLSSTGIRVLP--EELKALKDLSYLNMERTSF 621
+ SL++L+LS VLP +E L L++L + F
Sbjct: 117 CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 34.3 bits (77), Expect = 0.36, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 543 LFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGI-SKLISLQYLNLSSTGIRVL 601
L+L +NR++ + F + L L+L NN L P G+ KL L L+L+ ++ +
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQLKSI 93
Query: 602 P----EELKALKDLSYLN 615
P + L++L + LN
Sbjct: 94 PRGAFDNLRSLTHIWLLN 111
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 538 PHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGIS-KLISLQYLNLSST 596
PHL+ L L+ N+L+ I N F+ ++ L L N ++E + L L+ LNL
Sbjct: 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDN 112
Query: 597 GIR-VLPEELKALKDLSYLNMERTSF 621
I V+P + L L+ LN+ F
Sbjct: 113 QISCVMPGSFEHLNSLTSLNLASNPF 138
>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 176
Score = 33.9 bits (76), Expect = 0.40, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 51/129 (39%), Gaps = 24/129 (18%)
Query: 525 NNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISK 584
+N+IR L L TL + NNR+ I Q +P L L L+NN
Sbjct: 51 DNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-----------S 99
Query: 585 LISLQYLNLSSTGIRVLPEELKALKDLSYLNMERTSFVRRIPRQL--ISNFPLLRVLRML 642
L+ L L + L +LK L+YL + R + +L I P +RVL
Sbjct: 100 LVELGDL-----------DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 148
Query: 643 DCGALERAE 651
ER E
Sbjct: 149 KVKLKERQE 157
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 66/126 (52%), Gaps = 12/126 (9%)
Query: 527 KIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNN--FSLREFPPGISK 584
++R P +L +L L +N L+ I++ F +P+L+ L+LS+N +L EF S
Sbjct: 53 RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEF--LFSD 110
Query: 585 LISLQYLNLSSTGIRVLP----EELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLR 640
L +L+ L L + I V+ E++ L+ L YL+ + S R P +LI + L L
Sbjct: 111 LQALEVLLLYNNHIVVVDRNAFEDMAQLQKL-YLSQNQIS---RFPVELIKDGNKLPKLM 166
Query: 641 MLDCGA 646
+LD +
Sbjct: 167 LLDLSS 172
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 14/115 (12%)
Query: 517 GVKRMSLMNNKIRNLSEPATC----PHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNN 572
++ +SL NN++ SE +L L L N L ++ F ++PSL+ L+L N
Sbjct: 223 SIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYN 282
Query: 573 FSLREFPPGISKLISLQYLNL------SSTGIRVLPE----ELKALKDLSYLNME 617
R P L +L+YL+L S + P + LK L YLNM+
Sbjct: 283 NIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMD 337
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 33.5 bits (75), Expect = 0.58, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 543 LFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGI-SKLISLQYLNLSSTGIRVL 601
L+L +N+++ + F + L L+L NN L P G+ KL L L+L+ ++ +
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQLKSI 101
Query: 602 P----EELKALKDLSYLN 615
P + LK+L + LN
Sbjct: 102 PRGAFDNLKSLTHIWLLN 119
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 33.1 bits (74), Expect = 0.66, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 543 LFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGI-SKLISLQYLNLSSTGIRVL 601
L+L +N+++ + F + L L+L NN L P G+ KL L L+L+ ++ +
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQLKSI 93
Query: 602 P----EELKALKDLSYLN 615
P + LK+L + LN
Sbjct: 94 PRGAFDNLKSLTHIWLLN 111
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 521 MSLMNNKIRNLSEPATCPHLLTL---FLQNNRLSNITANFFQFMPSLKVLNLSNNFSLRE 577
+ L +N+I L EP L+ L +L +N+L + F + L VL+L N L
Sbjct: 45 LYLHDNQITKL-EPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTV 102
Query: 578 FPPGI-SKLISLQYLNLSSTGIRVLPEELKALKDLSYLNMERTSFVRRIPR 627
P + +L+ L+ L + + LP ++ L L++L +++ + IP
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL-KSIPH 152
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 33.1 bits (74), Expect = 0.82, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 5/133 (3%)
Query: 505 GLTEAPGIEKWKGVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSL 564
G+T GI+ + + L +N+I +L+ + L L N L N++A + S+
Sbjct: 58 GVTTIEGIQYLNNLIGLELKDNQITDLTPLKNLTKITELELSGNPLKNVSA--IAGLQSI 115
Query: 565 KVLNLSNNFSLREFPPGISKLISLQYLNLSSTGIRVLPEELKALKDLSYLNMERTSFVRR 624
K L+L++ + + P ++ L +LQ L L I + L L +L YL++
Sbjct: 116 KTLDLTST-QITDVTP-LAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNNQVNDL 172
Query: 625 IPRQLISNFPLLR 637
P +S LR
Sbjct: 173 TPLANLSKLTTLR 185
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 491 IEKEKEEFFVHAGVGLTEAPG-IEKWKGVKRMSLMNNKIRNLSEPA--TCPHLLTLFLQN 547
I ++ E ++ G T P + +K + + L NN+I LS + LLTL L
Sbjct: 29 IPRDVTELYLD-GNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87
Query: 548 NRLSNITANFFQFMPSLKVLNLSNN 572
NRL I F + SL++L+L N
Sbjct: 88 NRLRCIPPRTFDGLKSLRLLSLHGN 112
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 32.7 bits (73), Expect = 0.98, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 525 NNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISK 584
+N I +++ P L +L+L NN++++IT + L L+L +N + + P ++
Sbjct: 121 HNGISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDN-QISDIVP-LAG 176
Query: 585 LISLQYLNLSSTGIRVLPEELKALKDLSYLNM 616
L LQ L LS I L L LK+L L +
Sbjct: 177 LTKLQNLYLSKNHISDL-RALAGLKNLDVLEL 207
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 525 NNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISK 584
+N I +++ P L +L+L NN++++IT + L L+L +N + + P ++
Sbjct: 139 HNGISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDN-QISDIVP-LAG 194
Query: 585 LISLQYLNLSSTGIRVLPEELKALKDLSYLNM 616
L LQ L LS I L L LK+L L +
Sbjct: 195 LTKLQNLYLSKNHISDL-RALAGLKNLDVLEL 225
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 525 NNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISK 584
+N I +++ P L +L+L NN++++IT + L L+L +N + + P ++
Sbjct: 119 HNGISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDN-QISDIVP-LAG 174
Query: 585 LISLQYLNLSSTGIRVLPEELKALKDLSYLNM 616
L LQ L LS I L L LK+L L +
Sbjct: 175 LTKLQNLYLSKNHISDL-RALAGLKNLDVLEL 205
>pdb|2BGC|A Chain A, Prfa-G145s, A Constitutive Active Mutant Of The
Transcriptional Regulator In L.Monocytogenes
pdb|2BGC|B Chain B, Prfa-G145s, A Constitutive Active Mutant Of The
Transcriptional Regulator In L.Monocytogenes
pdb|2BGC|D Chain D, Prfa-G145s, A Constitutive Active Mutant Of The
Transcriptional Regulator In L.Monocytogenes
pdb|2BGC|E Chain E, Prfa-G145s, A Constitutive Active Mutant Of The
Transcriptional Regulator In L.Monocytogenes
pdb|2BGC|F Chain F, Prfa-G145s, A Constitutive Active Mutant Of The
Transcriptional Regulator In L.Monocytogenes
pdb|2BGC|G Chain G, Prfa-G145s, A Constitutive Active Mutant Of The
Transcriptional Regulator In L.Monocytogenes
pdb|2BGC|H Chain H, Prfa-G145s, A Constitutive Active Mutant Of The
Transcriptional Regulator In L.Monocytogenes
pdb|2BGC|I Chain I, Prfa-G145s, A Constitutive Active Mutant Of The
Transcriptional Regulator In L.Monocytogenes
Length = 238
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 103 LGGYCSKKCISSYKFGKEVSTKLKVLAD---LKDEGDFKDIAERTAKAPLIEEMPIEPRI 159
LG CS+ I +Y +GKE +K+ D +++ G IA +A + +I ++ E I
Sbjct: 141 LGSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVI 200
Query: 160 IGQESIF 166
+ + S F
Sbjct: 201 VYKNSCF 207
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 816 FAKLESLKLARLPNLESVYWTPLSFSHLKEIRIFKCPRLWKLP 858
FA LE+L LAR P L ++ + S + L+E+ I CP L +LP
Sbjct: 126 FAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELP 167
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 12/122 (9%)
Query: 514 KWKGVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNF 573
+W G++ + ++NL +L ++N+ LS + +P L+ L+L
Sbjct: 191 EWTGIRSLPASIANLQNLK---------SLKIRNSPLSAL-GPAIHHLPKLEELDLRGCT 240
Query: 574 SLREFPPGISKLISLQYLNLSS-TGIRVLPEELKALKDLSYLNMERTSFVRRIPRQLISN 632
+LR +PP L+ L L + + LP ++ L L L++ + R+P LI+
Sbjct: 241 ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP-SLIAQ 299
Query: 633 FP 634
P
Sbjct: 300 LP 301
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 525 NNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISK 584
+N I +++ P L +L+L NN++++IT + L L+L +N + + P ++
Sbjct: 139 HNGISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDN-QISDIVP-LAG 194
Query: 585 LISLQYLNLSSTGIRVLPEELKALKDLSYLNM 616
L LQ L LS I L L LK+L L +
Sbjct: 195 LTKLQNLYLSKNHISDL-RALAGLKNLDVLEL 225
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 525 NNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISK 584
+N I +++ P L +L+L NN++++IT + L L+L +N + + P ++
Sbjct: 139 HNGISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDN-QISDIVP-LAG 194
Query: 585 LISLQYLNLSSTGIRVLPEELKALKDLSYLNM 616
L LQ L LS I L L LK+L L +
Sbjct: 195 LTKLQNLYLSKNHISDL-RALAGLKNLDVLEL 225
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 11/120 (9%)
Query: 540 LLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGI-SKLISLQYLNLSSTGI 598
L L L N+L ++A F + L L L+NN L P G+ L L L L +
Sbjct: 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGNQL 119
Query: 599 RVLP----EELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGS 654
+ LP + L LK+L LN T+ ++ IP L+ L L L+ HG+
Sbjct: 120 KSLPSGVFDRLTKLKELR-LN---TNQLQSIPAGAFDKLTNLQTLS-LSTNQLQSVPHGA 174
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 543 LFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPG-ISKLISLQYLNLSSTGIRVL 601
L+L+NN + +I + F +PSL L+L L G L +L+YLNL I+ +
Sbjct: 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211
Query: 602 PEELKALKDLSYLNMERTSF 621
P L L L L M F
Sbjct: 212 P-NLTPLVGLEELEMSGNHF 230
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 11/120 (9%)
Query: 540 LLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGI-SKLISLQYLNLSSTGI 598
L L L N+L ++A F + L L L+NN L P G+ L L L L +
Sbjct: 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGNQL 119
Query: 599 RVLP----EELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGS 654
+ LP + L LK+L LN T+ ++ IP L+ L L L+ HG+
Sbjct: 120 KSLPSGVFDRLTKLKELR-LN---TNQLQSIPAGAFDKLTNLQTLS-LSTNQLQSVPHGA 174
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 525 NNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISK 584
+N I +++ P L +L+L NN++++IT + L L+L +N + + P ++
Sbjct: 116 HNGISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDN-QISDIVP-LAG 171
Query: 585 LISLQYLNLSSTGIRVLPEELKALKDLSYLNM 616
L LQ L LS I L L LK+L L +
Sbjct: 172 LTKLQNLYLSKNHISDL-RALAGLKNLDVLEL 202
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 518 VKRMSLMNNKIRNLSEPA--TCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSL 575
++++ + N IR L P L L L+ N LS++ F P L L++SNN
Sbjct: 101 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 160
Query: 576 REFPPGISKLISLQYLNLSSTGI 598
R SLQ L LSS +
Sbjct: 161 RIEDDTFQATTSLQNLQLSSNRL 183
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 537 CPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLN---- 592
P L TL + NN L I + FQ SL+ L LS+N R +S + SL + N
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN---RLTHVDLSLIPSLFHANVSYN 202
Query: 593 -LSSTGIRVLPEELKA 607
LS+ I + EEL A
Sbjct: 203 LLSTLAIPIAVEELDA 218
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 13/111 (11%)
Query: 253 IFKILSNKKFVLLLDDMWEPVDLTKVGVPIPNSTNASKVVFTTRYKEVCGKMEAHKKL-R 311
+ + + + +L+LDD+W+P L N +++ TTR K V + K +
Sbjct: 229 VLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHVVP 281
Query: 312 VEC-LTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITIG 361
VE L + + + V D +P A + KEC G PL + IG
Sbjct: 282 VESGLGREKGLEILSLFVNMKKED----LPAEAHSIIKECKGSPLVVSLIG 328
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 490 EIEKEKEEFFVHAGVGLTEAPGIEKWKGVKRMSLMNNKIRNLSEPA--TCPHLLTLFLQN 547
E+E K + H GV +K + ++SL N+I++L + L L+L
Sbjct: 34 ELESNKLQSLPH-GV-------FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85
Query: 548 NRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGI-SKLISLQYL 591
N+L ++ F + LK L L N L+ P GI +L SLQ +
Sbjct: 86 NKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKI 129
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 511 GIEKWKGVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNI 553
GI+ + ++L NN+I ++S P++ LFL N+L++I
Sbjct: 61 GIQYLPNLTSLNLSNNQITDISPIQYLPNVTKLFLNGNKLTDI 103
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 30.8 bits (68), Expect = 3.7, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 525 NNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISK 584
+N I +++ P L +L+L NN++++IT + L L+L +N + + P ++
Sbjct: 116 HNGISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDN-QISDIVP-LAC 171
Query: 585 LISLQYLNLSSTGIRVLPEELKALKDLSYLNM 616
L LQ L LS I L L LK+L L +
Sbjct: 172 LTKLQNLYLSKNHISDL-RALCGLKNLDVLEL 202
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 526 NKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKL 585
N I +++ P L +L+L NN++++IT + L L+L +N + + P ++ L
Sbjct: 119 NGISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDN-QISDIVP-LAGL 174
Query: 586 ISLQYLNLSSTGIRVLPEELKALKDLSYLNM 616
LQ L LS I L L LK+L L +
Sbjct: 175 TKLQNLYLSKNHISDL-RALAGLKNLDVLEL 204
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 543 LFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPG-ISKLISLQYLNLSSTGIRVL 601
L+L+NN + +I + F +PSL+ L+L L G L +L+YLNL+ +R +
Sbjct: 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200
Query: 602 PEELKALK 609
P +K
Sbjct: 201 PNLTPLIK 208
>pdb|2PA2|A Chain A, Crystal Structure Of Human Ribosomal Protein L10 Core
Domain
pdb|2PA2|B Chain B, Crystal Structure Of Human Ribosomal Protein L10 Core
Domain
Length = 151
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 355 LAIITIGRA-MSCKNKLEEWKHAVNVLKKSSSKFPGMDAMYPHLKFSYDRL 404
+A + IG+ MS + KL+ +H + L+++ KFPG ++ K+ + +
Sbjct: 95 VARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKF 145
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 540 LLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPG-ISKLISLQYLNLSSTGI 598
L L+L+ N L + P L+ L+L+NN +L E P G ++ L +L L L +
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENSL 184
Query: 599 RVLPE 603
+P+
Sbjct: 185 YTIPK 189
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 68/154 (44%), Gaps = 28/154 (18%)
Query: 487 IASEIEKEKEEFFVHAGVGLTEAPGIEKWKGVKRMSLMNNKIRNLSEPATCPHLLTLFLQ 546
+ ++ E E V AG + GIE ++ ++L N+I ++S + L L++
Sbjct: 37 VVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIG 96
Query: 547 NNRLSNITANFFQFMPSLK----------------------VLNLSNNFSLREFPPGISK 584
N++++I+A Q + +L+ LNL N +L + P +S
Sbjct: 97 TNKITDISA--LQNLTNLRELYLNEDNISDISPLANLTKXYSLNLGANHNLSDLSP-LSN 153
Query: 585 LISLQYLNLSSTGIR-VLPEELKALKDLSYLNME 617
L YL ++ + ++ V P + L DL L++
Sbjct: 154 XTGLNYLTVTESKVKDVTP--IANLTDLYSLSLN 185
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 540 LLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPG-ISKLISLQYLNLSSTGI 598
L L+L+ N L + P L+ L+L+NN +L E P G ++ L +L L L +
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENSL 184
Query: 599 RVLPE 603
+P+
Sbjct: 185 YTIPK 189
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 540 LLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPG-ISKLISLQYLNLSSTGI 598
L L+L+ N L + P L+ L+L+NN +L E P G ++ L +L L L +
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENSL 184
Query: 599 RVLPE 603
+P+
Sbjct: 185 YTIPK 189
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 540 LLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPG-ISKLISLQYLNLSSTGI 598
L L+L+ N L + P L+ L+L+NN +L E P G ++ L +L L L +
Sbjct: 127 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENSL 185
Query: 599 RVLPE 603
+P+
Sbjct: 186 YTIPK 190
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 540 LLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPG-ISKLISLQYLNLSSTGI 598
L L+L+ N L + P L+ L+L+NN +L E P G ++ L +L L L +
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENSL 184
Query: 599 RVLPE 603
+P+
Sbjct: 185 YTIPK 189
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 547 NNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGI-SKLISLQ 589
+N+L + F MP LK LNL++N L+ P GI +L SLQ
Sbjct: 179 SNKLRQMPRGIFGKMPKLKQLNLASN-QLKSVPDGIFDRLTSLQ 221
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 534 PATCPHLLTLFLQNNRL---SNITANFFQFMPSLKVLNLSNNFSLREFP--PGISKLISL 588
P P L L L+N + S + + L+ L+LS+N SLR+ P L
Sbjct: 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQL 255
Query: 589 QYLNLSSTGIRVLPEELKA---LKDLSYLNMERTSFVRRIPR 627
LNLS TG++ +P+ L A + DLSY ++R +P+
Sbjct: 256 NSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPSPDELPQ 297
>pdb|1L4A|B Chain B, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 88
Score = 30.4 bits (67), Expect = 5.0, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 475 ELHDVVRDMALWIASEIEK-EKEEFFVHAGVGLTEAPGIEKWKGVKRMS 522
ELHD+ DMA+ + S+ E ++ E+ V A V E ++ K VK S
Sbjct: 37 ELHDMFMDMAMLVESQGEMIDRIEYNVEAAVDYIETAKVDTKKAVKYQS 85
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.4 bits (67), Expect = 5.2, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 540 LLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPG-ISKLISLQYLNLSSTGI 598
L L+L+ N L + P L+ L+L+NN L E P G ++ L +L L L +
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-QLTELPAGLLNGLENLDTLLLQENSL 184
Query: 599 RVLPE 603
+P+
Sbjct: 185 YTIPK 189
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.4 bits (67), Expect = 5.3, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 540 LLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPG-ISKLISLQYLNLSSTGI 598
L L+L+ N L + P L+ L+L+NN L E P G ++ L +L L L +
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-QLTELPAGLLNGLENLDTLLLQENSL 184
Query: 599 RVLPE 603
+P+
Sbjct: 185 YTIPK 189
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 103/240 (42%), Gaps = 34/240 (14%)
Query: 212 VIWVVVSKDLN---LEKVQEDIGKKIDMFSESWKNKSP--VEKSCAIFKILSNKKF---V 263
V WV V K L K+Q ++ ++D ES+ + P +E++ +IL +K +
Sbjct: 182 VHWVSVGKQDKSGLLMKLQ-NLCTRLDQ-DESFSQRLPLNIEEAKDRLRILMLRKHPRSL 239
Query: 264 LLLDDMWEPVDLTKVGVPIPNSTNASKVVFTTRYKEVCGKMEAHKKL-RVEC-LTADDAW 321
L+LDD+W+ L + +++ TTR K V + K + VE L +
Sbjct: 240 LILDDVWDSWVLKAFD-------SQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGL 292
Query: 322 MLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITIGRAM-SCKNKLEEW------K 374
+ + V D +P+ A + KEC G PL + IG + N+ E + K
Sbjct: 293 EILSLFVNMKKAD----LPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNK 348
Query: 375 HAVNVLKKSSSKFPGMDAMYPHLKFSYDRLPDNKIRSCFLYCSLFPEDYKISKEDLIDCW 434
+ K SS + +D + S + L ++ I+ + S+ +D K+ + L W
Sbjct: 349 QFKRIRKSSSYDYEALDEA---MSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILW 404
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.0 bits (66), Expect = 5.6, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 540 LLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPG-ISKLISLQYLNLSSTGI 598
L L+L+ N L + P L+ L+L+NN L E P G ++ L +L L L +
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-QLTELPAGLLNGLENLDTLLLQENSL 184
Query: 599 RVLPE 603
+P+
Sbjct: 185 YTIPK 189
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.0 bits (66), Expect = 5.6, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 540 LLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPG-ISKLISLQYLNLSSTGI 598
L L+L+ N L + P L+ L+L+NN L E P G ++ L +L L L +
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-QLTELPAGLLNGLENLDTLLLQENSL 184
Query: 599 RVLPE 603
+P+
Sbjct: 185 YTIPK 189
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.0 bits (66), Expect = 5.6, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 540 LLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPG-ISKLISLQYLNLSSTGI 598
L L+L+ N L + P L+ L+L+NN L E P G ++ L +L L L +
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-DLTELPAGLLNGLENLDTLLLQENSL 184
Query: 599 RVLPE 603
+P+
Sbjct: 185 YTIPK 189
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 13/115 (11%)
Query: 513 EKWKGVKRMSLMNNKIRNLSEPATC-----PHLLTLFLQNNRLSNITANFFQFMPSLKVL 567
E + G+ + ++N L E + P + + LQ N ++ I F+F+ L+ L
Sbjct: 308 EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTL 367
Query: 568 NLSNN-FSLREFPPGI-------SKLISLQYLNLSSTGIRVLPEELKALKDLSYL 614
+L +N + F P I +KL++L +NL++ I + L+ L L +L
Sbjct: 368 DLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFL 422
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 540 LLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSSTGI 598
L L L +N++ I F+P+L+ L+L NN L P G+ L LQ + L + I
Sbjct: 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNNI 276
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 521 MSLMNNKIRNLSEP--ATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREF 578
+ L NN I L + HL L L NN++S I F + L+ L +S N L E
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEI 117
Query: 579 PPGISKLISLQYLNLSSTGIRVLPEEL-KALKDLSYLNM 616
PP + SL L + IR +P+ + L++++ + M
Sbjct: 118 PPNLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEM 154
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 526 NKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKL 585
N I +++ P L +L+L NN++++IT + L L+L +N + + P ++ L
Sbjct: 122 NGISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDN-QISDIVP-LAGL 177
Query: 586 ISLQYLNLSSTGIRVLPEELKALKDLSYLNM 616
LQ L LS I L L LK+L L +
Sbjct: 178 TKLQNLYLSKNHISDL-RALAGLKNLDVLEL 207
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 558 FQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSSTGIRV-LPEELKALKDLSYLNM 616
++ +L+ L L N E P G+S +L +++LS+ + +P+ + L++L+ L +
Sbjct: 459 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 518
Query: 617 ERTSFVRRIPRQL 629
SF IP +L
Sbjct: 519 SNNSFSGNIPAEL 531
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 579 PPGISKLISLQYLNLSSTGIR-VLPEELKALKDLSYLNMERTSFVRRIPRQLISNFP 634
PP I+KL L YL ++ T + +P+ L +K L L+ + +P IS+ P
Sbjct: 94 PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLP 149
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 518 VKRMSLMNNKIRNLSEPA--TCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSL 575
++++ + N IR L P L L L+ N LS++ F P L L++SNN
Sbjct: 95 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 154
Query: 576 REFPPGISKLISLQYLNLSSTGI 598
R SLQ L LSS +
Sbjct: 155 RIEDDTFQATTSLQNLQLSSNRL 177
>pdb|2ZKR|HH Chain h, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 214
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 355 LAIITIGRA-MSCKNKLEEWKHAVNVLKKSSSKFPGMDAMYPHLKFSYDRL 404
+A + IG+ MS + KL+ +H + L+++ KFPG ++ K+ + +
Sbjct: 126 VAKVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKF 176
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 558 FQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSSTGIRV-LPEELKALKDLSYLNM 616
++ +L+ L L N E P G+S +L +++LS+ + +P+ + L++L+ L +
Sbjct: 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521
Query: 617 ERTSFVRRIPRQL 629
SF IP +L
Sbjct: 522 SNNSFSGNIPAEL 534
>pdb|1ZBP|A Chain A, X-Ray Crystal Structure Of Protein Vpa1032 From Vibrio
Parahaemolyticus. Northeast Structural Genomics
Consortium Target Vpr44
Length = 273
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 803 EFGATAGNHHQIPFAKLESLKLARLPNLESVYWTPLSF 840
E +TAGN+ +P A + +L++ +L W P+ F
Sbjct: 157 ELFSTAGNYFLVPIASINTLEIKSATSLLESVWRPVEF 194
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
Query: 526 NKIRNLSE---PATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSN------NFSLR 576
NK+ LS+ T P+L+ + L N S +LK + N N +LR
Sbjct: 498 NKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLN-SSTLKGFGIRNQRDAQGNRTLR 556
Query: 577 EFPPGISKLISLQYLNLSSTGIRVLPEEL 605
E+P GI+ SL L + S IR + E++
Sbjct: 557 EWPEGITLCPSLTQLQIGSNDIRKVNEKI 585
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,979,819
Number of Sequences: 62578
Number of extensions: 985209
Number of successful extensions: 2665
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 2408
Number of HSP's gapped (non-prelim): 268
length of query: 922
length of database: 14,973,337
effective HSP length: 108
effective length of query: 814
effective length of database: 8,214,913
effective search space: 6686939182
effective search space used: 6686939182
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)