Query 042817
Match_columns 922
No_of_seqs 616 out of 4874
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 09:48:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042817.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042817hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.3E-99 3E-104 892.3 50.8 840 17-889 9-881 (889)
2 PLN03210 Resistant to P. syrin 100.0 7E-64 1.5E-68 625.0 50.6 638 157-859 184-911 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 4.9E-45 1.1E-49 391.8 16.7 280 162-443 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 2.6E-21 5.5E-26 243.4 16.5 333 514-875 116-463 (968)
5 PLN00113 leucine-rich repeat r 99.8 7E-21 1.5E-25 239.4 16.9 330 512-874 160-509 (968)
6 PLN03210 Resistant to P. syrin 99.8 6.7E-20 1.5E-24 230.2 20.0 332 500-874 595-963 (1153)
7 KOG0444 Cytoskeletal regulator 99.8 6.3E-23 1.4E-27 218.2 -6.2 325 498-859 36-380 (1255)
8 KOG4194 Membrane glycoprotein 99.8 5.4E-21 1.2E-25 202.8 0.5 323 518-883 127-463 (873)
9 KOG4194 Membrane glycoprotein 99.8 3.3E-20 7.1E-25 196.9 4.4 319 512-874 98-426 (873)
10 KOG0444 Cytoskeletal regulator 99.8 5E-21 1.1E-25 204.0 -3.6 292 509-848 96-393 (1255)
11 KOG0472 Leucine-rich repeat pr 99.7 1.5E-18 3.1E-23 176.8 -4.2 323 509-852 199-539 (565)
12 KOG4658 Apoptotic ATPase [Sign 99.7 1.2E-15 2.5E-20 181.8 19.5 161 528-705 513-676 (889)
13 KOG0618 Serine/threonine phosp 99.6 4.5E-16 9.8E-21 174.9 -0.1 101 517-619 46-147 (1081)
14 KOG0472 Leucine-rich repeat pr 99.5 4.6E-17 1E-21 166.0 -9.5 257 518-852 47-308 (565)
15 PRK15387 E3 ubiquitin-protein 99.5 6.7E-14 1.4E-18 163.2 13.2 244 505-828 212-456 (788)
16 KOG0617 Ras suppressor protein 99.5 2.9E-16 6.4E-21 141.7 -6.3 162 506-685 23-187 (264)
17 PRK15387 E3 ubiquitin-protein 99.5 1.5E-13 3.3E-18 160.2 12.4 255 517-852 202-456 (788)
18 PRK15370 E3 ubiquitin-protein 99.4 3.9E-13 8.5E-18 158.0 10.2 59 723-796 346-404 (754)
19 PRK15370 E3 ubiquitin-protein 99.4 6.1E-13 1.3E-17 156.4 11.1 244 517-852 179-426 (754)
20 KOG0618 Serine/threonine phosp 99.4 1.8E-14 3.9E-19 162.2 -3.7 284 517-848 220-504 (1081)
21 KOG0617 Ras suppressor protein 99.4 1.3E-14 2.7E-19 131.3 -5.0 138 528-682 23-161 (264)
22 PRK04841 transcriptional regul 99.3 1.7E-10 3.6E-15 144.9 22.5 292 156-488 13-332 (903)
23 PRK00411 cdc6 cell division co 99.3 6.6E-10 1.4E-14 124.9 24.7 293 156-468 29-357 (394)
24 KOG4237 Extracellular matrix p 99.2 3E-13 6.4E-18 138.5 -4.3 289 501-826 53-355 (498)
25 cd00116 LRR_RI Leucine-rich re 99.2 8.1E-12 1.8E-16 136.6 3.5 12 755-766 220-231 (319)
26 TIGR02928 orc1/cdc6 family rep 99.1 1.4E-08 3E-13 113.0 27.1 296 156-469 14-350 (365)
27 TIGR03015 pepcterm_ATPase puta 99.1 5.2E-09 1.1E-13 111.1 22.4 181 176-364 41-242 (269)
28 PF01637 Arch_ATPase: Archaeal 99.1 1.9E-10 4.1E-15 119.5 10.5 194 159-359 1-233 (234)
29 cd00116 LRR_RI Leucine-rich re 99.1 5.4E-11 1.2E-15 130.1 5.7 89 697-790 193-289 (319)
30 KOG4237 Extracellular matrix p 99.1 2.8E-12 6E-17 131.5 -4.3 271 538-850 67-355 (498)
31 PRK00080 ruvB Holliday junctio 99.0 5.8E-09 1.3E-13 113.4 15.6 273 157-469 25-310 (328)
32 PF05729 NACHT: NACHT domain 99.0 2.8E-09 6.1E-14 104.0 11.3 141 179-328 1-163 (166)
33 TIGR00635 ruvB Holliday juncti 99.0 6.3E-08 1.4E-12 104.7 21.7 274 157-470 4-290 (305)
34 PF14580 LRR_9: Leucine-rich r 99.0 7.6E-10 1.6E-14 106.1 5.8 106 535-645 16-124 (175)
35 PF14580 LRR_9: Leucine-rich r 99.0 6.2E-10 1.4E-14 106.7 5.0 132 510-645 13-151 (175)
36 COG2909 MalT ATP-dependent tra 98.9 7E-08 1.5E-12 109.8 17.7 290 157-488 19-338 (894)
37 KOG4341 F-box protein containi 98.8 6.2E-10 1.3E-14 115.6 -2.4 278 539-877 139-439 (483)
38 PRK06893 DNA replication initi 98.7 6.5E-08 1.4E-12 99.0 10.8 152 177-361 38-204 (229)
39 KOG2120 SCF ubiquitin ligase, 98.6 1.5E-09 3.3E-14 107.5 -3.3 184 587-827 186-373 (419)
40 KOG1259 Nischarin, modulator o 98.6 4.7E-09 1E-13 104.0 -0.8 130 512-646 280-411 (490)
41 KOG0532 Leucine-rich repeat (L 98.6 1.6E-09 3.4E-14 116.7 -4.7 173 515-707 97-270 (722)
42 TIGR03420 DnaA_homol_Hda DnaA 98.6 3.2E-07 7E-12 94.5 11.2 167 162-361 22-202 (226)
43 PRK13342 recombination factor 98.6 4.2E-07 9.2E-12 101.9 12.6 174 158-361 13-197 (413)
44 KOG3207 Beta-tubulin folding c 98.5 2E-08 4.4E-13 105.2 1.1 209 535-788 118-335 (505)
45 PF13173 AAA_14: AAA domain 98.5 1.8E-07 4E-12 86.3 6.8 120 178-320 2-127 (128)
46 PTZ00112 origin recognition co 98.5 2.5E-06 5.5E-11 98.1 16.6 171 156-330 754-951 (1164)
47 cd00009 AAA The AAA+ (ATPases 98.5 7.1E-07 1.5E-11 85.0 10.6 123 160-299 1-131 (151)
48 PRK04195 replication factor C 98.5 8.3E-06 1.8E-10 93.5 20.9 181 157-365 14-207 (482)
49 PRK07003 DNA polymerase III su 98.5 3.1E-06 6.6E-11 97.1 16.8 190 157-359 16-220 (830)
50 KOG3207 Beta-tubulin folding c 98.5 2.9E-08 6.3E-13 104.0 0.6 157 515-685 120-285 (505)
51 TIGR02903 spore_lon_C ATP-depe 98.5 5.1E-05 1.1E-09 88.9 26.4 202 157-363 154-398 (615)
52 COG4886 Leucine-rich repeat (L 98.5 1.2E-07 2.6E-12 106.8 4.5 121 521-645 98-220 (394)
53 COG3899 Predicted ATPase [Gene 98.4 2.3E-06 4.9E-11 103.5 15.0 265 159-434 2-333 (849)
54 KOG4341 F-box protein containi 98.4 9.6E-09 2.1E-13 106.9 -4.6 285 517-859 139-444 (483)
55 COG2256 MGS1 ATPase related to 98.4 1.7E-06 3.6E-11 90.7 11.7 169 158-357 25-209 (436)
56 cd01128 rho_factor Transcripti 98.4 4E-07 8.7E-12 93.3 7.0 91 177-271 15-114 (249)
57 COG1474 CDC6 Cdc6-related prot 98.4 1.7E-05 3.6E-10 86.3 19.7 199 157-360 17-238 (366)
58 PRK12402 replication factor C 98.4 3.4E-06 7.3E-11 92.8 14.7 193 157-358 15-224 (337)
59 PRK05564 DNA polymerase III su 98.4 5.3E-06 1.1E-10 89.7 15.8 176 158-359 5-189 (313)
60 PF13855 LRR_8: Leucine rich r 98.4 2.2E-07 4.8E-12 73.0 3.8 58 539-597 2-60 (61)
61 PRK08727 hypothetical protein; 98.4 3.6E-06 7.8E-11 86.4 13.1 166 159-357 21-201 (233)
62 COG3903 Predicted ATPase [Gene 98.4 6.6E-07 1.4E-11 94.4 7.5 289 177-488 13-314 (414)
63 PLN03150 hypothetical protein; 98.4 7.3E-07 1.6E-11 105.2 8.8 107 539-646 419-527 (623)
64 KOG1259 Nischarin, modulator o 98.4 1.6E-07 3.4E-12 93.5 2.6 126 608-767 283-410 (490)
65 KOG0532 Leucine-rich repeat (L 98.4 6.4E-08 1.4E-12 104.6 -0.3 131 510-645 115-245 (722)
66 PF13191 AAA_16: AAA ATPase do 98.4 1.4E-06 2.9E-11 86.7 9.3 74 158-234 1-82 (185)
67 PRK14949 DNA polymerase III su 98.4 5.2E-06 1.1E-10 97.3 14.7 179 157-359 16-219 (944)
68 PRK14961 DNA polymerase III su 98.4 8.5E-06 1.8E-10 89.7 15.8 190 157-358 16-218 (363)
69 PRK14963 DNA polymerase III su 98.3 8.8E-06 1.9E-10 92.4 15.9 191 157-357 14-214 (504)
70 PF13401 AAA_22: AAA domain; P 98.3 9.6E-07 2.1E-11 82.2 6.8 116 178-297 4-125 (131)
71 PRK00440 rfc replication facto 98.3 1.1E-05 2.3E-10 88.2 15.7 179 157-358 17-201 (319)
72 PLN03025 replication factor C 98.3 8.2E-06 1.8E-10 88.4 14.5 180 158-358 14-198 (319)
73 COG4886 Leucine-rich repeat (L 98.3 3.2E-07 6.8E-12 103.4 3.6 129 513-645 113-243 (394)
74 PRK14960 DNA polymerase III su 98.3 9.1E-06 2E-10 92.4 14.8 190 157-358 15-217 (702)
75 PRK12323 DNA polymerase III su 98.3 8.4E-06 1.8E-10 92.4 14.2 195 157-360 16-225 (700)
76 PF05496 RuvB_N: Holliday junc 98.3 1.2E-05 2.5E-10 79.0 13.2 171 157-361 24-222 (233)
77 KOG2120 SCF ubiquitin ligase, 98.3 5.8E-08 1.3E-12 96.6 -2.8 182 562-790 185-374 (419)
78 PTZ00202 tuzin; Provisional 98.3 6.8E-06 1.5E-10 87.8 12.4 160 154-327 259-433 (550)
79 KOG2028 ATPase related to the 98.3 9.7E-06 2.1E-10 83.2 12.8 144 159-327 140-293 (554)
80 KOG1909 Ran GTPase-activating 98.3 2E-07 4.3E-12 95.3 0.5 13 516-528 30-42 (382)
81 PRK08084 DNA replication initi 98.3 7.7E-06 1.7E-10 84.1 12.2 170 158-360 24-209 (235)
82 PRK09376 rho transcription ter 98.3 2.2E-06 4.7E-11 91.3 8.2 100 168-271 158-267 (416)
83 PRK06645 DNA polymerase III su 98.2 2.2E-05 4.7E-10 88.8 16.1 192 158-357 22-226 (507)
84 PF13855 LRR_8: Leucine rich r 98.2 1E-06 2.2E-11 69.3 3.8 56 563-619 2-59 (61)
85 PRK14957 DNA polymerase III su 98.2 1.6E-05 3.5E-10 90.4 15.0 181 157-360 16-221 (546)
86 PRK13341 recombination factor 98.2 8.8E-06 1.9E-10 96.0 13.2 168 158-355 29-212 (725)
87 PRK14962 DNA polymerase III su 98.2 2.2E-05 4.9E-10 88.4 15.2 184 157-362 14-221 (472)
88 PRK14956 DNA polymerase III su 98.2 1.7E-05 3.7E-10 87.7 13.9 194 157-357 18-219 (484)
89 PRK09087 hypothetical protein; 98.2 1.9E-05 4.1E-10 80.4 12.6 142 177-360 43-195 (226)
90 KOG1909 Ran GTPase-activating 98.2 1.1E-06 2.4E-11 89.9 3.3 236 535-790 27-309 (382)
91 PRK08691 DNA polymerase III su 98.2 2E-05 4.4E-10 90.5 13.7 178 157-358 16-218 (709)
92 TIGR01242 26Sp45 26S proteasom 98.2 1.6E-05 3.4E-10 87.9 12.7 170 157-354 122-328 (364)
93 PRK07940 DNA polymerase III su 98.1 4.6E-05 9.9E-10 83.8 15.7 185 157-360 5-213 (394)
94 TIGR02397 dnaX_nterm DNA polym 98.1 5.1E-05 1.1E-09 84.1 16.5 181 157-360 14-218 (355)
95 TIGR00678 holB DNA polymerase 98.1 5.6E-05 1.2E-09 75.2 15.0 159 168-356 3-187 (188)
96 PRK14964 DNA polymerase III su 98.1 3.5E-05 7.6E-10 86.4 14.8 179 157-357 13-214 (491)
97 PRK14951 DNA polymerase III su 98.1 3.9E-05 8.5E-10 88.5 15.5 195 157-359 16-224 (618)
98 PRK05896 DNA polymerase III su 98.1 3.1E-05 6.7E-10 88.2 14.2 193 157-361 16-222 (605)
99 PRK07994 DNA polymerase III su 98.1 2.8E-05 6.1E-10 89.8 13.7 189 157-359 16-219 (647)
100 PRK07471 DNA polymerase III su 98.1 8.5E-05 1.8E-09 81.0 16.3 195 157-361 19-239 (365)
101 PRK14958 DNA polymerase III su 98.1 3.6E-05 7.8E-10 87.8 14.0 180 157-358 16-218 (509)
102 PLN03150 hypothetical protein; 98.1 6.5E-06 1.4E-10 97.2 8.2 110 517-626 419-532 (623)
103 PRK09112 DNA polymerase III su 98.1 4.2E-05 9.1E-10 82.9 13.6 196 157-361 23-241 (351)
104 PRK05642 DNA replication initi 98.1 3.6E-05 7.8E-10 79.1 12.2 150 179-361 46-209 (234)
105 TIGR00767 rho transcription te 98.1 1.5E-05 3.3E-10 85.5 9.6 93 177-271 167-266 (415)
106 PRK14959 DNA polymerase III su 98.0 7.8E-05 1.7E-09 85.4 15.3 196 157-364 16-225 (624)
107 PRK08903 DnaA regulatory inact 98.0 5E-05 1.1E-09 78.1 12.3 168 160-364 22-203 (227)
108 PRK14955 DNA polymerase III su 98.0 6.2E-05 1.4E-09 83.9 13.9 197 157-358 16-226 (397)
109 PRK14970 DNA polymerase III su 98.0 0.00011 2.3E-09 81.7 15.6 179 157-357 17-206 (367)
110 PRK09111 DNA polymerase III su 98.0 7.3E-05 1.6E-09 86.6 14.1 194 157-359 24-232 (598)
111 PRK14969 DNA polymerase III su 98.0 9.2E-05 2E-09 85.1 14.9 178 157-356 16-216 (527)
112 PF14516 AAA_35: AAA-like doma 98.0 0.00057 1.2E-08 74.2 19.6 200 156-367 10-246 (331)
113 KOG0989 Replication factor C, 97.9 5.7E-05 1.2E-09 76.5 10.4 181 157-354 36-224 (346)
114 PF00308 Bac_DnaA: Bacterial d 97.9 7.6E-05 1.6E-09 75.7 11.6 159 178-358 34-206 (219)
115 PRK03992 proteasome-activating 97.9 0.00011 2.3E-09 81.7 13.6 170 157-354 131-337 (389)
116 KOG2227 Pre-initiation complex 97.9 0.00049 1.1E-08 73.9 17.5 199 156-361 149-373 (529)
117 PRK07764 DNA polymerase III su 97.9 0.00015 3.2E-09 87.0 15.3 189 158-358 16-219 (824)
118 PRK14952 DNA polymerase III su 97.9 0.00017 3.7E-09 83.0 15.2 194 157-362 13-222 (584)
119 PRK06305 DNA polymerase III su 97.9 0.00019 4.1E-09 80.9 15.4 176 157-355 17-217 (451)
120 PRK14950 DNA polymerase III su 97.9 0.00022 4.8E-09 83.5 16.3 193 157-360 16-221 (585)
121 PRK08451 DNA polymerase III su 97.9 0.00025 5.4E-09 80.4 16.0 182 157-360 14-218 (535)
122 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.4E-10 57.9 3.3 34 587-620 2-35 (44)
123 PRK14971 DNA polymerase III su 97.9 0.00026 5.6E-09 82.7 16.4 179 157-358 17-220 (614)
124 PRK11331 5-methylcytosine-spec 97.9 0.00024 5.3E-09 77.8 14.9 108 157-272 175-284 (459)
125 PRK14954 DNA polymerase III su 97.9 0.00023 5E-09 82.6 15.6 194 157-355 16-223 (620)
126 KOG0531 Protein phosphatase 1, 97.9 1.2E-06 2.5E-11 98.9 -3.3 124 516-645 72-197 (414)
127 KOG2543 Origin recognition com 97.9 8.4E-05 1.8E-09 77.5 10.4 165 156-327 5-192 (438)
128 PRK15386 type III secretion pr 97.8 2.2E-05 4.9E-10 84.7 6.2 79 515-604 51-133 (426)
129 KOG0531 Protein phosphatase 1, 97.8 2E-06 4.3E-11 97.0 -1.9 210 536-786 70-284 (414)
130 PRK14087 dnaA chromosomal repl 97.8 0.00037 8.1E-09 78.5 16.1 166 178-361 141-320 (450)
131 PF12799 LRR_4: Leucine Rich r 97.8 2.2E-05 4.7E-10 56.4 4.0 41 562-603 1-41 (44)
132 CHL00181 cbbX CbbX; Provisiona 97.8 0.00026 5.6E-09 74.8 13.9 132 180-330 61-211 (287)
133 TIGR02881 spore_V_K stage V sp 97.8 0.00015 3.3E-09 76.0 12.1 154 158-330 7-193 (261)
134 PRK15386 type III secretion pr 97.8 4.8E-05 1E-09 82.2 8.2 73 558-643 48-121 (426)
135 TIGR02880 cbbX_cfxQ probable R 97.8 0.00024 5.3E-09 75.1 13.4 154 158-330 23-210 (284)
136 KOG2982 Uncharacterized conser 97.8 8.3E-06 1.8E-10 81.5 1.8 81 535-619 68-156 (418)
137 PRK07133 DNA polymerase III su 97.8 0.00052 1.1E-08 80.0 16.6 184 157-357 18-216 (725)
138 PRK14953 DNA polymerase III su 97.8 0.00059 1.3E-08 77.5 16.7 177 157-360 16-220 (486)
139 COG0466 Lon ATP-dependent Lon 97.8 0.004 8.7E-08 70.7 22.3 154 157-328 323-508 (782)
140 TIGR00763 lon ATP-dependent pr 97.8 0.0034 7.4E-08 76.4 23.6 46 157-202 320-371 (775)
141 PHA02544 44 clamp loader, smal 97.7 0.00017 3.6E-09 78.5 11.1 144 157-325 21-170 (316)
142 KOG2982 Uncharacterized conser 97.7 1.1E-05 2.3E-10 80.8 1.5 102 540-645 47-157 (418)
143 TIGR03345 VI_ClpV1 type VI sec 97.7 0.00023 5.1E-09 86.4 13.1 177 158-353 188-389 (852)
144 TIGR00362 DnaA chromosomal rep 97.7 0.00072 1.6E-08 76.1 16.3 159 178-358 136-308 (405)
145 PRK14948 DNA polymerase III su 97.7 0.00073 1.6E-08 79.0 16.4 194 157-360 16-222 (620)
146 PRK06647 DNA polymerase III su 97.7 0.00073 1.6E-08 78.0 16.1 191 157-359 16-219 (563)
147 PTZ00361 26 proteosome regulat 97.7 0.00022 4.8E-09 79.2 11.3 169 158-353 184-388 (438)
148 PTZ00454 26S protease regulato 97.7 0.0004 8.7E-09 76.7 13.1 170 158-354 146-351 (398)
149 KOG2004 Mitochondrial ATP-depe 97.7 0.0028 6.1E-08 71.5 19.3 153 157-327 411-595 (906)
150 KOG1859 Leucine-rich repeat pr 97.7 1.1E-06 2.4E-11 97.7 -7.2 124 515-645 163-290 (1096)
151 KOG1859 Leucine-rich repeat pr 97.7 1.2E-06 2.7E-11 97.2 -6.7 23 509-531 102-124 (1096)
152 PF05621 TniB: Bacterial TniB 97.7 0.0012 2.6E-08 68.4 15.1 196 157-358 34-259 (302)
153 PRK06620 hypothetical protein; 97.6 0.00018 3.9E-09 72.6 8.7 134 179-358 45-187 (214)
154 TIGR02639 ClpA ATP-dependent C 97.6 0.00015 3.3E-09 87.4 9.6 154 158-328 183-358 (731)
155 PRK00149 dnaA chromosomal repl 97.6 0.001 2.2E-08 75.8 15.6 159 178-358 148-320 (450)
156 PRK14965 DNA polymerase III su 97.6 0.00065 1.4E-08 79.2 14.2 192 157-360 16-221 (576)
157 PRK14088 dnaA chromosomal repl 97.6 0.00043 9.2E-09 78.0 12.2 159 178-358 130-303 (440)
158 KOG4579 Leucine-rich repeat (L 97.6 8.5E-06 1.9E-10 72.1 -1.3 108 519-628 30-141 (177)
159 PRK05563 DNA polymerase III su 97.6 0.0016 3.5E-08 75.6 16.5 190 157-358 16-218 (559)
160 PRK10787 DNA-binding ATP-depen 97.6 0.0038 8.3E-08 75.2 19.8 47 156-202 321-373 (784)
161 CHL00095 clpC Clp protease ATP 97.5 0.00033 7.3E-09 85.6 10.2 154 158-327 180-353 (821)
162 PRK10865 protein disaggregatio 97.5 0.00089 1.9E-08 81.8 13.8 153 158-328 179-354 (857)
163 KOG3665 ZYG-1-like serine/thre 97.5 6E-05 1.3E-09 88.7 2.8 128 516-645 122-261 (699)
164 PRK12422 chromosomal replicati 97.5 0.0012 2.6E-08 74.3 13.0 152 178-353 141-306 (445)
165 COG1373 Predicted ATPase (AAA+ 97.4 0.0013 2.8E-08 73.1 13.0 137 161-324 21-163 (398)
166 TIGR03689 pup_AAA proteasome A 97.4 0.00083 1.8E-08 75.8 11.4 160 158-329 183-379 (512)
167 PRK05707 DNA polymerase III su 97.4 0.0023 5E-08 68.9 14.4 95 259-360 105-203 (328)
168 smart00382 AAA ATPases associa 97.4 0.00034 7.3E-09 65.7 7.3 89 179-274 3-92 (148)
169 TIGR01241 FtsH_fam ATP-depende 97.4 0.0033 7.2E-08 72.5 16.5 170 158-354 56-260 (495)
170 COG2255 RuvB Holliday junction 97.4 0.014 3E-07 59.1 18.1 170 157-360 26-223 (332)
171 TIGR03346 chaperone_ClpB ATP-d 97.4 0.00089 1.9E-08 82.2 12.1 153 158-328 174-349 (852)
172 KOG3665 ZYG-1-like serine/thre 97.4 0.00012 2.6E-09 86.2 4.3 139 537-683 121-262 (699)
173 PF00004 AAA: ATPase family as 97.4 0.00047 1E-08 64.0 7.3 22 181-202 1-22 (132)
174 PRK08118 topology modulation p 97.4 0.00011 2.4E-09 71.0 2.9 36 179-214 2-37 (167)
175 KOG1644 U2-associated snRNP A' 97.3 0.00028 6.1E-09 67.2 5.2 102 540-645 44-151 (233)
176 PRK10536 hypothetical protein; 97.3 0.0033 7.2E-08 63.8 13.1 55 158-215 56-110 (262)
177 PRK11034 clpA ATP-dependent Cl 97.3 0.00066 1.4E-08 80.9 9.4 155 158-328 187-362 (758)
178 COG1222 RPT1 ATP-dependent 26S 97.3 0.0014 3E-08 68.2 10.0 196 158-381 152-393 (406)
179 PRK07399 DNA polymerase III su 97.3 0.0066 1.4E-07 65.0 15.6 196 158-360 5-221 (314)
180 PRK14086 dnaA chromosomal repl 97.3 0.0024 5.2E-08 73.1 12.8 155 179-355 315-483 (617)
181 KOG1947 Leucine rich repeat pr 97.3 5.6E-05 1.2E-09 87.8 -0.3 109 537-645 187-306 (482)
182 CHL00176 ftsH cell division pr 97.3 0.0047 1E-07 72.4 15.2 169 158-353 184-387 (638)
183 TIGR00602 rad24 checkpoint pro 97.3 0.00093 2E-08 77.5 9.3 46 157-202 84-134 (637)
184 PRK08116 hypothetical protein; 97.2 0.0006 1.3E-08 71.4 6.9 102 179-298 115-221 (268)
185 KOG1644 U2-associated snRNP A' 97.2 0.00043 9.3E-09 66.0 5.1 98 520-618 46-149 (233)
186 COG0542 clpA ATP-binding subun 97.2 0.013 2.8E-07 68.7 17.8 105 157-272 491-605 (786)
187 PF05673 DUF815: Protein of un 97.2 0.0085 1.8E-07 60.1 13.9 46 157-202 27-76 (249)
188 PRK08058 DNA polymerase III su 97.2 0.0066 1.4E-07 65.8 14.2 160 158-326 6-180 (329)
189 PRK12608 transcription termina 97.1 0.003 6.6E-08 67.7 11.1 105 165-271 119-231 (380)
190 COG3267 ExeA Type II secretory 97.1 0.011 2.4E-07 59.0 13.9 180 176-361 49-246 (269)
191 PF04665 Pox_A32: Poxvirus A32 97.1 0.00087 1.9E-08 67.7 5.8 37 180-219 15-51 (241)
192 KOG4579 Leucine-rich repeat (L 97.0 7.8E-05 1.7E-09 66.2 -1.6 88 516-605 53-142 (177)
193 KOG0733 Nuclear AAA ATPase (VC 97.0 0.0063 1.4E-07 67.6 12.4 185 158-365 191-411 (802)
194 COG0593 DnaA ATPase involved i 97.0 0.0036 7.9E-08 68.1 10.7 134 177-332 112-261 (408)
195 PRK08769 DNA polymerase III su 97.0 0.018 3.9E-07 61.5 15.6 176 164-361 11-209 (319)
196 PRK07261 topology modulation p 97.0 0.002 4.4E-08 62.6 7.6 67 180-271 2-68 (171)
197 PF13177 DNA_pol3_delta2: DNA 96.9 0.0057 1.2E-07 58.8 10.1 42 161-202 1-43 (162)
198 KOG0991 Replication factor C, 96.9 0.0021 4.5E-08 62.5 6.7 68 157-225 27-94 (333)
199 KOG0741 AAA+-type ATPase [Post 96.9 0.017 3.6E-07 63.2 13.7 143 177-350 537-704 (744)
200 PRK06871 DNA polymerase III su 96.8 0.037 8E-07 59.3 16.0 177 165-358 10-201 (325)
201 TIGR02640 gas_vesic_GvpN gas v 96.8 0.019 4.1E-07 60.2 13.7 56 164-227 9-64 (262)
202 CHL00195 ycf46 Ycf46; Provisio 96.8 0.0088 1.9E-07 67.8 11.7 172 158-354 229-429 (489)
203 smart00763 AAA_PrkA PrkA AAA d 96.8 0.0017 3.7E-08 69.4 5.4 45 158-202 52-102 (361)
204 KOG2739 Leucine-rich acidic nu 96.8 0.00064 1.4E-08 67.8 2.0 59 585-645 64-127 (260)
205 PRK06835 DNA replication prote 96.8 0.014 3E-07 62.8 12.2 36 179-217 184-219 (329)
206 PRK08181 transposase; Validate 96.8 0.002 4.3E-08 67.1 5.6 105 171-298 101-209 (269)
207 TIGR01243 CDC48 AAA family ATP 96.8 0.013 2.9E-07 71.1 13.6 170 158-354 454-657 (733)
208 PF02562 PhoH: PhoH-like prote 96.8 0.0029 6.2E-08 62.5 6.4 52 162-216 5-56 (205)
209 PF10443 RNA12: RNA12 protein; 96.7 0.076 1.7E-06 57.8 17.4 202 162-371 1-289 (431)
210 PF13207 AAA_17: AAA domain; P 96.7 0.0014 3.1E-08 59.7 3.7 23 180-202 1-23 (121)
211 PF00448 SRP54: SRP54-type pro 96.7 0.0052 1.1E-07 61.0 7.9 88 179-269 2-92 (196)
212 PRK04296 thymidine kinase; Pro 96.7 0.0018 3.9E-08 64.2 4.6 114 179-300 3-118 (190)
213 PRK12377 putative replication 96.7 0.0079 1.7E-07 61.8 9.4 75 177-271 100-174 (248)
214 PRK10865 protein disaggregatio 96.7 0.011 2.3E-07 72.5 12.1 46 157-202 568-622 (857)
215 TIGR01243 CDC48 AAA family ATP 96.7 0.011 2.3E-07 71.9 12.1 172 158-356 179-383 (733)
216 CHL00095 clpC Clp protease ATP 96.7 0.0045 9.7E-08 75.9 8.9 106 156-272 508-623 (821)
217 TIGR03345 VI_ClpV1 type VI sec 96.7 0.0038 8.3E-08 76.1 8.2 47 156-202 565-620 (852)
218 KOG2123 Uncharacterized conser 96.7 0.00017 3.6E-09 71.8 -3.0 100 537-640 18-123 (388)
219 TIGR03346 chaperone_ClpB ATP-d 96.6 0.0069 1.5E-07 74.4 10.2 61 157-220 565-634 (852)
220 KOG0730 AAA+-type ATPase [Post 96.6 0.034 7.3E-07 62.9 14.3 164 158-344 435-631 (693)
221 KOG2739 Leucine-rich acidic nu 96.6 0.00088 1.9E-08 66.9 1.9 105 538-645 43-154 (260)
222 TIGR02639 ClpA ATP-dependent C 96.6 0.0049 1.1E-07 74.5 8.6 103 156-272 453-565 (731)
223 PRK06526 transposase; Provisio 96.6 0.0019 4.2E-08 66.8 4.4 25 178-202 98-122 (254)
224 COG1223 Predicted ATPase (AAA+ 96.6 0.024 5.2E-07 56.3 11.3 169 158-354 122-319 (368)
225 PRK06090 DNA polymerase III su 96.6 0.067 1.4E-06 57.1 15.7 175 165-360 11-201 (319)
226 PF07728 AAA_5: AAA domain (dy 96.6 0.0034 7.4E-08 58.8 5.3 75 181-271 2-76 (139)
227 TIGR02237 recomb_radB DNA repa 96.6 0.0079 1.7E-07 60.9 8.3 48 177-228 11-58 (209)
228 KOG1947 Leucine rich repeat pr 96.6 0.00045 9.7E-09 80.2 -1.0 115 558-683 184-307 (482)
229 PRK09361 radB DNA repair and r 96.5 0.012 2.5E-07 60.4 9.5 46 177-226 22-67 (225)
230 PRK09183 transposase/IS protei 96.5 0.0025 5.4E-08 66.5 4.5 24 179-202 103-126 (259)
231 PRK07993 DNA polymerase III su 96.5 0.064 1.4E-06 58.0 15.4 177 165-358 10-202 (334)
232 cd01393 recA_like RecA is a b 96.5 0.023 4.9E-07 58.4 11.6 91 177-271 18-125 (226)
233 PRK06921 hypothetical protein; 96.5 0.0046 1E-07 64.6 6.2 39 177-217 116-154 (266)
234 PRK12727 flagellar biosynthesi 96.5 0.12 2.5E-06 58.3 17.1 88 178-270 350-438 (559)
235 PRK04132 replication factor C 96.5 0.04 8.6E-07 66.2 14.4 152 186-359 574-730 (846)
236 KOG0736 Peroxisome assembly fa 96.5 0.12 2.6E-06 59.5 17.2 143 157-322 672-850 (953)
237 KOG1514 Origin recognition com 96.5 0.082 1.8E-06 60.3 15.8 163 157-328 396-589 (767)
238 COG5238 RNA1 Ran GTPase-activa 96.4 0.0025 5.3E-08 63.5 3.3 41 605-645 88-131 (388)
239 PF01695 IstB_IS21: IstB-like 96.4 0.0017 3.6E-08 63.4 2.1 75 177-272 46-120 (178)
240 PRK06964 DNA polymerase III su 96.4 0.11 2.4E-06 56.0 16.1 91 259-360 131-225 (342)
241 PRK06696 uridine kinase; Valid 96.4 0.0053 1.2E-07 62.7 5.8 42 161-202 2-46 (223)
242 PRK08939 primosomal protein Dn 96.4 0.0089 1.9E-07 63.7 7.5 115 161-296 135-259 (306)
243 TIGR02012 tigrfam_recA protein 96.4 0.0098 2.1E-07 63.2 7.8 87 177-271 54-144 (321)
244 PRK11034 clpA ATP-dependent Cl 96.4 0.0082 1.8E-07 71.8 8.0 46 157-202 458-512 (758)
245 cd01123 Rad51_DMC1_radA Rad51_ 96.3 0.014 3.1E-07 60.3 8.8 92 177-270 18-125 (235)
246 PF08423 Rad51: Rad51; InterP 96.3 0.014 3.1E-07 60.6 8.7 91 178-269 38-142 (256)
247 cd00983 recA RecA is a bacter 96.3 0.01 2.2E-07 63.1 7.6 86 177-270 54-143 (325)
248 cd00561 CobA_CobO_BtuR ATP:cor 96.3 0.013 2.8E-07 55.3 7.5 117 179-299 3-139 (159)
249 cd01133 F1-ATPase_beta F1 ATP 96.3 0.013 2.9E-07 60.5 8.2 92 177-271 68-174 (274)
250 PRK07952 DNA replication prote 96.3 0.023 4.9E-07 58.3 9.8 89 165-272 84-174 (244)
251 COG2812 DnaX DNA polymerase II 96.3 0.028 6.1E-07 63.3 11.3 183 158-354 17-214 (515)
252 KOG2123 Uncharacterized conser 96.3 0.00032 7E-09 69.9 -3.5 106 561-678 18-124 (388)
253 cd01394 radB RadB. The archaea 96.3 0.031 6.7E-07 57.0 10.9 43 177-222 18-60 (218)
254 COG0470 HolB ATPase involved i 96.3 0.019 4.2E-07 62.6 10.0 138 159-314 3-167 (325)
255 PRK15455 PrkA family serine pr 96.2 0.0052 1.1E-07 69.1 4.9 45 158-202 77-127 (644)
256 PRK05541 adenylylsulfate kinas 96.2 0.011 2.4E-07 57.9 6.5 36 178-216 7-42 (176)
257 PRK09354 recA recombinase A; P 96.1 0.016 3.4E-07 62.3 8.0 87 177-271 59-149 (349)
258 KOG0731 AAA+-type ATPase conta 96.1 0.048 1E-06 63.6 12.3 173 158-357 312-521 (774)
259 PRK10733 hflB ATP-dependent me 96.1 0.047 1E-06 64.9 12.8 147 180-353 187-356 (644)
260 COG1484 DnaC DNA replication p 96.1 0.023 4.9E-07 59.0 8.8 75 177-271 104-178 (254)
261 cd01120 RecA-like_NTPases RecA 96.1 0.031 6.8E-07 53.7 9.3 40 180-222 1-40 (165)
262 KOG0734 AAA+-type ATPase conta 96.1 0.011 2.3E-07 64.6 6.3 45 158-202 305-361 (752)
263 COG5238 RNA1 Ran GTPase-activa 96.1 0.0086 1.9E-07 59.8 5.0 39 582-620 88-131 (388)
264 COG0572 Udk Uridine kinase [Nu 96.1 0.019 4.1E-07 56.7 7.4 79 177-261 7-85 (218)
265 COG1875 NYN ribonuclease and A 96.1 0.016 3.6E-07 60.6 7.2 53 160-212 227-279 (436)
266 KOG1969 DNA replication checkp 96.0 0.015 3.2E-07 66.2 7.3 73 177-272 325-399 (877)
267 KOG2228 Origin recognition com 96.0 0.073 1.6E-06 55.3 11.3 169 157-328 24-219 (408)
268 PLN00020 ribulose bisphosphate 96.0 0.011 2.4E-07 62.8 5.6 26 177-202 147-172 (413)
269 PF07693 KAP_NTPase: KAP famil 96.0 0.092 2E-06 57.3 13.3 40 163-202 2-44 (325)
270 COG1618 Predicted nucleotide k 95.9 0.01 2.3E-07 54.7 4.7 24 179-202 6-29 (179)
271 cd01131 PilT Pilus retraction 95.9 0.012 2.5E-07 58.9 5.6 108 179-301 2-112 (198)
272 cd03115 SRP The signal recogni 95.9 0.032 6.9E-07 54.5 8.6 23 180-202 2-24 (173)
273 PRK06547 hypothetical protein; 95.9 0.011 2.4E-07 57.3 5.2 36 167-202 4-39 (172)
274 TIGR02238 recomb_DMC1 meiotic 95.9 0.038 8.3E-07 59.1 9.7 93 177-270 95-201 (313)
275 COG1102 Cmk Cytidylate kinase 95.9 0.02 4.4E-07 52.8 6.4 45 180-238 2-46 (179)
276 PHA00729 NTP-binding motif con 95.9 0.013 2.7E-07 58.7 5.4 36 167-202 6-41 (226)
277 KOG0733 Nuclear AAA ATPase (VC 95.8 0.074 1.6E-06 59.4 11.4 151 179-354 546-718 (802)
278 PRK10463 hydrogenase nickel in 95.8 0.039 8.5E-07 57.5 8.9 35 168-202 94-128 (290)
279 KOG0735 AAA+-type ATPase [Post 95.8 0.022 4.8E-07 64.5 7.4 72 179-271 432-505 (952)
280 cd01121 Sms Sms (bacterial rad 95.8 0.048 1E-06 59.8 10.0 83 177-269 81-167 (372)
281 PRK00771 signal recognition pa 95.8 0.06 1.3E-06 60.1 10.8 90 177-270 94-185 (437)
282 PRK10867 signal recognition pa 95.7 0.069 1.5E-06 59.5 11.0 26 177-202 99-124 (433)
283 PRK14722 flhF flagellar biosyn 95.7 0.048 1.1E-06 59.3 9.5 88 178-270 137-225 (374)
284 KOG1051 Chaperone HSP104 and r 95.7 0.034 7.3E-07 66.3 8.9 102 157-272 562-672 (898)
285 PF13238 AAA_18: AAA domain; P 95.7 0.0089 1.9E-07 55.0 3.4 22 181-202 1-22 (129)
286 TIGR03499 FlhF flagellar biosy 95.7 0.053 1.1E-06 57.4 9.6 88 177-269 193-281 (282)
287 TIGR01425 SRP54_euk signal rec 95.7 0.5 1.1E-05 52.5 17.3 26 177-202 99-124 (429)
288 COG0464 SpoVK ATPases of the A 95.6 0.087 1.9E-06 61.1 11.9 132 177-331 275-426 (494)
289 COG0194 Gmk Guanylate kinase [ 95.6 0.05 1.1E-06 51.9 7.9 24 179-202 5-28 (191)
290 TIGR00959 ffh signal recogniti 95.6 0.057 1.2E-06 60.1 9.7 92 177-270 98-192 (428)
291 PF14532 Sigma54_activ_2: Sigm 95.6 0.012 2.6E-07 54.9 3.8 43 160-202 1-45 (138)
292 TIGR03877 thermo_KaiC_1 KaiC d 95.6 0.075 1.6E-06 54.8 10.1 48 177-229 20-67 (237)
293 PRK07667 uridine kinase; Provi 95.6 0.018 4E-07 57.2 5.3 37 166-202 3-41 (193)
294 TIGR02239 recomb_RAD51 DNA rep 95.6 0.062 1.4E-06 57.7 9.7 59 177-236 95-156 (316)
295 PRK13531 regulatory ATPase Rav 95.6 0.018 3.9E-07 64.1 5.6 44 157-202 20-63 (498)
296 PF00560 LRR_1: Leucine Rich R 95.6 0.0063 1.4E-07 36.2 1.2 18 588-605 2-19 (22)
297 PRK14974 cell division protein 95.5 0.095 2E-06 56.4 10.9 91 177-271 139-233 (336)
298 PLN03187 meiotic recombination 95.5 0.053 1.1E-06 58.5 8.9 59 177-236 125-186 (344)
299 cd02019 NK Nucleoside/nucleoti 95.5 0.012 2.5E-07 47.3 3.0 23 180-202 1-23 (69)
300 PRK08699 DNA polymerase III su 95.5 0.14 3E-06 55.2 12.1 24 179-202 22-45 (325)
301 PF00485 PRK: Phosphoribulokin 95.5 0.012 2.6E-07 58.7 3.7 83 180-264 1-87 (194)
302 TIGR00708 cobA cob(I)alamin ad 95.5 0.08 1.7E-06 50.7 9.0 118 178-298 5-140 (173)
303 KOG3864 Uncharacterized conser 95.5 0.0016 3.6E-08 62.2 -2.4 86 725-832 103-191 (221)
304 COG2884 FtsE Predicted ATPase 95.4 0.071 1.5E-06 50.8 8.2 124 177-304 27-203 (223)
305 PRK09270 nucleoside triphospha 95.4 0.022 4.8E-07 58.4 5.4 27 176-202 31-57 (229)
306 COG4608 AppF ABC-type oligopep 95.4 0.055 1.2E-06 55.1 8.0 123 177-304 38-176 (268)
307 PF13604 AAA_30: AAA domain; P 95.4 0.034 7.4E-07 55.4 6.6 32 171-202 11-42 (196)
308 PF13306 LRR_5: Leucine rich r 95.4 0.06 1.3E-06 49.4 7.8 113 516-636 12-128 (129)
309 PRK04301 radA DNA repair and r 95.4 0.072 1.6E-06 57.6 9.5 57 177-235 101-161 (317)
310 PF01583 APS_kinase: Adenylyls 95.3 0.021 4.5E-07 53.8 4.4 35 179-216 3-37 (156)
311 cd03247 ABCC_cytochrome_bd The 95.3 0.042 9E-07 53.9 6.8 127 177-312 27-169 (178)
312 COG0542 clpA ATP-binding subun 95.3 0.088 1.9E-06 62.0 10.3 151 158-328 171-346 (786)
313 cd03238 ABC_UvrA The excision 95.3 0.04 8.6E-07 53.6 6.5 124 177-312 20-161 (176)
314 TIGR00390 hslU ATP-dependent p 95.3 0.038 8.3E-07 60.2 6.9 74 157-233 12-103 (441)
315 TIGR00554 panK_bact pantothena 95.3 0.11 2.4E-06 54.6 10.2 27 176-202 60-86 (290)
316 PRK08233 hypothetical protein; 95.3 0.015 3.3E-07 57.3 3.6 25 178-202 3-27 (182)
317 COG0541 Ffh Signal recognition 95.3 0.96 2.1E-05 49.3 17.0 58 177-238 99-158 (451)
318 PF12775 AAA_7: P-loop contain 95.3 0.028 6E-07 59.0 5.6 89 167-271 23-111 (272)
319 PRK12678 transcription termina 95.2 0.04 8.8E-07 61.9 6.9 102 168-271 405-514 (672)
320 PRK11889 flhF flagellar biosyn 95.2 0.1 2.2E-06 56.6 9.6 89 177-270 240-330 (436)
321 PTZ00301 uridine kinase; Provi 95.2 0.019 4.1E-07 57.6 3.9 25 178-202 3-27 (210)
322 cd02025 PanK Pantothenate kina 95.2 0.088 1.9E-06 53.4 8.9 23 180-202 1-23 (220)
323 PRK06067 flagellar accessory p 95.2 0.094 2E-06 54.1 9.2 88 177-270 24-130 (234)
324 KOG2035 Replication factor C, 95.2 0.23 4.9E-06 50.3 11.2 209 158-383 14-261 (351)
325 PF06309 Torsin: Torsin; Inte 95.2 0.039 8.4E-07 49.3 5.4 45 158-202 26-77 (127)
326 TIGR03881 KaiC_arch_4 KaiC dom 95.1 0.11 2.3E-06 53.4 9.6 46 177-227 19-64 (229)
327 TIGR02858 spore_III_AA stage I 95.1 0.081 1.7E-06 55.2 8.5 125 166-301 98-232 (270)
328 cd03246 ABCC_Protease_Secretio 95.1 0.032 6.9E-07 54.5 5.2 127 177-312 27-168 (173)
329 TIGR00064 ftsY signal recognit 95.1 0.11 2.4E-06 54.5 9.6 90 177-270 71-164 (272)
330 PRK05480 uridine/cytidine kina 95.1 0.021 4.5E-07 57.8 4.0 26 177-202 5-30 (209)
331 KOG0652 26S proteasome regulat 95.1 0.27 5.8E-06 49.0 11.3 53 150-202 162-229 (424)
332 PF13671 AAA_33: AAA domain; P 95.1 0.02 4.3E-07 53.9 3.6 23 180-202 1-23 (143)
333 PRK12726 flagellar biosynthesi 95.1 0.24 5.2E-06 53.5 11.9 90 177-271 205-296 (407)
334 COG0563 Adk Adenylate kinase a 95.1 0.03 6.5E-07 54.5 4.8 23 180-202 2-24 (178)
335 COG0468 RecA RecA/RadA recombi 95.1 0.095 2.1E-06 54.5 8.8 90 177-271 59-152 (279)
336 TIGR00235 udk uridine kinase. 95.1 0.022 4.8E-07 57.4 4.1 26 177-202 5-30 (207)
337 PTZ00088 adenylate kinase 1; P 95.1 0.019 4.1E-07 58.4 3.5 22 181-202 9-30 (229)
338 PF00154 RecA: recA bacterial 95.0 0.13 2.7E-06 54.7 9.7 87 178-272 53-143 (322)
339 PRK06762 hypothetical protein; 95.0 0.022 4.7E-07 55.2 3.8 24 179-202 3-26 (166)
340 PF10236 DAP3: Mitochondrial r 95.0 0.59 1.3E-05 50.2 14.9 49 309-357 258-306 (309)
341 PRK08972 fliI flagellum-specif 95.0 0.06 1.3E-06 59.4 7.4 90 177-271 161-263 (444)
342 KOG0744 AAA+-type ATPase [Post 95.0 0.044 9.5E-07 56.4 5.8 81 178-271 177-261 (423)
343 cd03214 ABC_Iron-Siderophores_ 95.0 0.041 9E-07 54.1 5.7 120 177-301 24-161 (180)
344 PRK03839 putative kinase; Prov 95.0 0.021 4.5E-07 56.2 3.6 23 180-202 2-24 (180)
345 PRK11823 DNA repair protein Ra 95.0 0.12 2.5E-06 58.6 10.0 83 177-269 79-165 (446)
346 cd03228 ABCC_MRP_Like The MRP 95.0 0.061 1.3E-06 52.3 6.8 123 177-312 27-167 (171)
347 TIGR02236 recomb_radA DNA repa 95.0 0.11 2.4E-06 56.1 9.4 58 177-235 94-154 (310)
348 COG1066 Sms Predicted ATP-depe 95.0 0.11 2.4E-06 55.7 8.9 96 167-270 80-178 (456)
349 PF00910 RNA_helicase: RNA hel 94.9 0.019 4.2E-07 50.8 2.9 22 181-202 1-22 (107)
350 PF07726 AAA_3: ATPase family 94.9 0.018 3.9E-07 51.6 2.6 28 181-211 2-29 (131)
351 TIGR01360 aden_kin_iso1 adenyl 94.9 0.023 4.9E-07 56.4 3.7 26 177-202 2-27 (188)
352 PF13481 AAA_25: AAA domain; P 94.9 0.098 2.1E-06 52.1 8.3 41 179-220 33-81 (193)
353 PRK05201 hslU ATP-dependent pr 94.9 0.059 1.3E-06 58.8 6.9 78 157-234 15-107 (443)
354 PRK07132 DNA polymerase III su 94.9 0.9 2E-05 48.2 15.6 168 166-360 5-185 (299)
355 KOG0743 AAA+-type ATPase [Post 94.9 0.95 2.1E-05 49.5 15.8 148 179-365 236-414 (457)
356 PLN03186 DNA repair protein RA 94.9 0.13 2.8E-06 55.6 9.5 59 177-236 122-183 (342)
357 COG4088 Predicted nucleotide k 94.9 0.022 4.8E-07 54.7 3.1 24 179-202 2-25 (261)
358 PF00006 ATP-synt_ab: ATP synt 94.9 0.13 2.7E-06 51.7 8.7 97 169-270 5-115 (215)
359 cd03223 ABCD_peroxisomal_ALDP 94.9 0.094 2E-06 50.7 7.7 124 177-312 26-160 (166)
360 PRK12723 flagellar biosynthesi 94.8 0.16 3.4E-06 55.9 10.1 89 178-270 174-264 (388)
361 PRK00625 shikimate kinase; Pro 94.8 0.026 5.7E-07 54.7 3.6 23 180-202 2-24 (173)
362 PRK06002 fliI flagellum-specif 94.8 0.068 1.5E-06 59.3 7.1 90 177-271 164-265 (450)
363 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.8 0.058 1.2E-06 50.7 5.7 104 177-302 25-131 (144)
364 PRK13765 ATP-dependent proteas 94.7 0.056 1.2E-06 63.3 6.8 74 157-235 31-104 (637)
365 cd01124 KaiC KaiC is a circadi 94.7 0.12 2.5E-06 51.2 8.2 45 180-229 1-45 (187)
366 cd00071 GMPK Guanosine monopho 94.7 0.07 1.5E-06 49.6 6.0 23 180-202 1-23 (137)
367 PRK04040 adenylate kinase; Pro 94.7 0.03 6.6E-07 55.2 3.7 24 179-202 3-26 (188)
368 PRK05439 pantothenate kinase; 94.7 0.22 4.8E-06 52.8 10.4 27 176-202 84-110 (311)
369 PRK06217 hypothetical protein; 94.6 0.049 1.1E-06 53.7 5.2 23 180-202 3-25 (183)
370 cd01135 V_A-ATPase_B V/A-type 94.6 0.16 3.5E-06 52.4 9.0 95 177-271 68-177 (276)
371 KOG2170 ATPase of the AAA+ sup 94.6 0.075 1.6E-06 54.4 6.3 100 158-272 83-190 (344)
372 cd03230 ABC_DR_subfamily_A Thi 94.6 0.063 1.4E-06 52.3 5.8 117 177-302 25-159 (173)
373 PRK12724 flagellar biosynthesi 94.6 0.13 2.8E-06 56.5 8.6 25 178-202 223-247 (432)
374 PF00560 LRR_1: Leucine Rich R 94.6 0.015 3.3E-07 34.6 0.9 22 563-585 1-22 (22)
375 COG0465 HflB ATP-dependent Zn 94.6 0.24 5.3E-06 56.7 11.1 170 158-354 151-355 (596)
376 COG0396 sufC Cysteine desulfur 94.6 0.092 2E-06 51.8 6.6 60 250-311 152-217 (251)
377 KOG0728 26S proteasome regulat 94.6 0.15 3.2E-06 50.4 8.0 166 158-347 147-350 (404)
378 PRK05922 type III secretion sy 94.6 0.1 2.2E-06 57.9 7.8 90 177-271 156-258 (434)
379 TIGR00150 HI0065_YjeE ATPase, 94.6 0.062 1.3E-06 49.1 5.2 26 177-202 21-46 (133)
380 TIGR00416 sms DNA repair prote 94.6 0.17 3.8E-06 57.2 9.9 40 177-219 93-132 (454)
381 TIGR03575 selen_PSTK_euk L-ser 94.5 0.11 2.5E-06 55.8 8.0 22 181-202 2-23 (340)
382 TIGR03878 thermo_KaiC_2 KaiC d 94.5 0.094 2E-06 54.8 7.3 40 177-219 35-74 (259)
383 PRK12597 F0F1 ATP synthase sub 94.5 0.13 2.8E-06 57.6 8.7 93 177-271 142-248 (461)
384 PRK04328 hypothetical protein; 94.5 0.12 2.5E-06 53.8 7.9 41 177-220 22-62 (249)
385 PF07724 AAA_2: AAA domain (Cd 94.5 0.023 4.9E-07 55.0 2.4 42 178-222 3-45 (171)
386 PTZ00035 Rad51 protein; Provis 94.5 0.35 7.6E-06 52.5 11.7 57 177-235 117-177 (337)
387 PRK05973 replicative DNA helic 94.5 0.21 4.5E-06 50.8 9.3 49 177-230 63-111 (237)
388 cd03216 ABC_Carb_Monos_I This 94.5 0.048 1.1E-06 52.5 4.6 115 177-301 25-145 (163)
389 PRK05986 cob(I)alamin adenolsy 94.4 0.14 3.1E-06 49.8 7.6 118 178-298 22-158 (191)
390 TIGR01359 UMP_CMP_kin_fam UMP- 94.4 0.029 6.4E-07 55.3 3.0 23 180-202 1-23 (183)
391 COG2607 Predicted ATPase (AAA+ 94.4 0.22 4.7E-06 49.4 8.7 46 157-202 60-109 (287)
392 cd02023 UMPK Uridine monophosp 94.4 0.029 6.2E-07 56.2 2.9 23 180-202 1-23 (198)
393 PRK09519 recA DNA recombinatio 94.3 0.13 2.7E-06 61.2 8.4 86 177-270 59-148 (790)
394 COG1428 Deoxynucleoside kinase 94.3 0.036 7.9E-07 54.0 3.3 48 178-231 4-51 (216)
395 TIGR03498 FliI_clade3 flagella 94.3 0.097 2.1E-06 58.0 7.1 91 177-271 139-241 (418)
396 TIGR00382 clpX endopeptidase C 94.3 0.14 3E-06 56.7 8.2 47 156-202 76-140 (413)
397 PRK08533 flagellar accessory p 94.3 0.23 4.9E-06 50.9 9.3 49 177-230 23-71 (230)
398 PF03308 ArgK: ArgK protein; 94.3 0.11 2.3E-06 52.8 6.6 57 165-222 14-72 (266)
399 PRK06851 hypothetical protein; 94.3 0.71 1.5E-05 50.2 13.3 55 160-220 200-254 (367)
400 TIGR02030 BchI-ChlI magnesium 94.3 0.062 1.3E-06 58.0 5.3 46 157-202 4-49 (337)
401 KOG0739 AAA+-type ATPase [Post 94.3 0.46 1E-05 48.5 10.9 169 157-354 133-335 (439)
402 cd02024 NRK1 Nicotinamide ribo 94.3 0.033 7.2E-07 54.5 3.0 23 180-202 1-23 (187)
403 PF00625 Guanylate_kin: Guanyl 94.3 0.062 1.3E-06 53.0 5.0 36 178-216 2-37 (183)
404 TIGR02322 phosphon_PhnN phosph 94.2 0.04 8.7E-07 54.1 3.5 24 179-202 2-25 (179)
405 COG3640 CooC CO dehydrogenase 94.2 0.099 2.1E-06 51.7 6.0 44 180-225 2-45 (255)
406 PRK08927 fliI flagellum-specif 94.2 0.13 2.8E-06 57.1 7.7 90 177-271 157-259 (442)
407 PRK00131 aroK shikimate kinase 94.2 0.044 9.6E-07 53.5 3.7 25 178-202 4-28 (175)
408 TIGR01069 mutS2 MutS2 family p 94.2 0.047 1E-06 65.8 4.6 191 177-382 321-522 (771)
409 cd03281 ABC_MSH5_euk MutS5 hom 94.2 0.045 9.8E-07 55.2 3.8 24 178-201 29-52 (213)
410 PF03205 MobB: Molybdopterin g 94.1 0.09 1.9E-06 49.0 5.4 39 179-219 1-39 (140)
411 COG1936 Predicted nucleotide k 94.1 0.038 8.3E-07 51.9 2.8 20 180-199 2-21 (180)
412 PF13245 AAA_19: Part of AAA d 94.1 0.13 2.9E-06 42.0 5.6 25 178-202 10-34 (76)
413 PRK13947 shikimate kinase; Pro 94.1 0.046 9.9E-07 53.2 3.6 23 180-202 3-25 (171)
414 PRK05703 flhF flagellar biosyn 94.1 0.21 4.5E-06 56.0 9.1 86 179-269 222-308 (424)
415 KOG3347 Predicted nucleotide k 94.1 0.079 1.7E-06 48.2 4.6 24 179-202 8-31 (176)
416 cd00227 CPT Chloramphenicol (C 94.1 0.045 9.7E-07 53.5 3.4 24 179-202 3-26 (175)
417 COG0003 ArsA Predicted ATPase 94.0 0.095 2.1E-06 55.9 6.0 49 178-229 2-50 (322)
418 cd01129 PulE-GspE PulE/GspE Th 94.0 0.17 3.7E-06 52.9 7.9 104 160-276 62-165 (264)
419 cd02020 CMPK Cytidine monophos 94.0 0.042 9.1E-07 51.9 3.1 23 180-202 1-23 (147)
420 PRK08149 ATP synthase SpaL; Va 94.0 0.18 4E-06 55.8 8.4 90 177-271 150-252 (428)
421 PRK10416 signal recognition pa 94.0 0.42 9E-06 51.4 10.9 26 177-202 113-138 (318)
422 TIGR00764 lon_rel lon-related 94.0 0.16 3.4E-06 59.8 8.4 74 157-235 18-91 (608)
423 cd02028 UMPK_like Uridine mono 94.0 0.061 1.3E-06 52.7 4.2 23 180-202 1-23 (179)
424 cd02021 GntK Gluconate kinase 94.0 0.041 8.8E-07 52.3 2.9 23 180-202 1-23 (150)
425 PRK00889 adenylylsulfate kinas 93.9 0.059 1.3E-06 52.7 4.1 25 178-202 4-28 (175)
426 PRK06995 flhF flagellar biosyn 93.9 0.26 5.6E-06 55.6 9.6 58 179-237 257-315 (484)
427 TIGR03305 alt_F1F0_F1_bet alte 93.9 0.15 3.3E-06 56.6 7.6 93 177-271 137-243 (449)
428 cd00267 ABC_ATPase ABC (ATP-bi 93.9 0.11 2.4E-06 49.8 5.7 113 178-303 25-145 (157)
429 PF08433 KTI12: Chromatin asso 93.9 0.1 2.2E-06 54.5 5.8 24 179-202 2-25 (270)
430 PRK14721 flhF flagellar biosyn 93.8 0.35 7.5E-06 53.7 10.2 60 178-238 191-251 (420)
431 COG1703 ArgK Putative periplas 93.8 0.12 2.7E-06 53.0 6.1 56 167-223 38-95 (323)
432 PF06745 KaiC: KaiC; InterPro 93.8 0.07 1.5E-06 54.7 4.6 89 177-270 18-125 (226)
433 PRK13949 shikimate kinase; Pro 93.8 0.054 1.2E-06 52.4 3.5 24 179-202 2-25 (169)
434 cd01136 ATPase_flagellum-secre 93.8 0.2 4.3E-06 53.6 8.0 90 177-271 68-170 (326)
435 PRK09280 F0F1 ATP synthase sub 93.8 0.18 3.9E-06 56.3 7.9 93 177-271 143-249 (463)
436 cd01132 F1_ATPase_alpha F1 ATP 93.8 0.21 4.5E-06 51.7 7.7 90 177-271 68-172 (274)
437 CHL00081 chlI Mg-protoporyphyr 93.8 0.082 1.8E-06 57.1 5.0 46 157-202 17-62 (350)
438 TIGR01351 adk adenylate kinase 93.7 0.18 3.8E-06 51.0 7.2 22 181-202 2-23 (210)
439 cd01125 repA Hexameric Replica 93.7 0.29 6.4E-06 50.5 9.0 23 180-202 3-25 (239)
440 PF05970 PIF1: PIF1-like helic 93.7 0.15 3.2E-06 56.3 7.1 38 165-202 9-46 (364)
441 TIGR02902 spore_lonB ATP-depen 93.7 0.12 2.5E-06 60.0 6.5 45 158-202 66-110 (531)
442 PRK10751 molybdopterin-guanine 93.7 0.069 1.5E-06 51.3 3.8 26 177-202 5-30 (173)
443 PRK06936 type III secretion sy 93.7 0.18 4E-06 55.9 7.6 90 177-271 161-263 (439)
444 COG0714 MoxR-like ATPases [Gen 93.6 0.15 3.3E-06 55.5 7.0 62 158-227 25-86 (329)
445 PF00158 Sigma54_activat: Sigm 93.6 0.081 1.8E-06 51.0 4.3 69 159-231 1-71 (168)
446 PRK14530 adenylate kinase; Pro 93.6 0.059 1.3E-06 54.7 3.5 24 179-202 4-27 (215)
447 PRK05800 cobU adenosylcobinami 93.6 0.24 5.3E-06 47.8 7.5 83 180-270 3-86 (170)
448 TIGR03263 guanyl_kin guanylate 93.6 0.052 1.1E-06 53.4 2.9 24 179-202 2-25 (180)
449 PRK13407 bchI magnesium chelat 93.6 0.084 1.8E-06 56.8 4.7 46 157-202 8-53 (334)
450 PF08298 AAA_PrkA: PrkA AAA do 93.5 0.11 2.3E-06 55.3 5.3 46 157-202 61-112 (358)
451 PRK15429 formate hydrogenlyase 93.5 0.18 3.8E-06 61.0 8.0 60 158-220 377-438 (686)
452 TIGR00073 hypB hydrogenase acc 93.5 0.081 1.7E-06 53.3 4.3 32 171-202 15-46 (207)
453 TIGR01039 atpD ATP synthase, F 93.5 0.25 5.3E-06 55.0 8.3 93 177-271 142-248 (461)
454 cd00544 CobU Adenosylcobinamid 93.5 0.32 6.9E-06 46.9 8.2 80 181-270 2-83 (169)
455 PF03266 NTPase_1: NTPase; In 93.5 0.065 1.4E-06 51.7 3.4 22 181-202 2-23 (168)
456 PF02374 ArsA_ATPase: Anion-tr 93.5 0.094 2E-06 56.1 4.9 46 179-227 2-47 (305)
457 KOG0735 AAA+-type ATPase [Post 93.5 0.87 1.9E-05 52.3 12.3 149 179-354 702-870 (952)
458 COG1124 DppF ABC-type dipeptid 93.5 0.081 1.8E-06 52.7 4.0 26 177-202 32-57 (252)
459 cd00464 SK Shikimate kinase (S 93.5 0.066 1.4E-06 51.0 3.4 22 181-202 2-23 (154)
460 cd01130 VirB11-like_ATPase Typ 93.4 0.1 2.2E-06 51.6 4.7 104 166-277 14-117 (186)
461 cd02029 PRK_like Phosphoribulo 93.4 0.34 7.5E-06 49.7 8.4 23 180-202 1-23 (277)
462 COG0529 CysC Adenylylsulfate k 93.4 0.13 2.8E-06 48.5 5.0 29 174-202 19-47 (197)
463 PRK15453 phosphoribulokinase; 93.4 0.37 7.9E-06 49.9 8.7 26 177-202 4-29 (290)
464 cd01122 GP4d_helicase GP4d_hel 93.4 0.49 1.1E-05 50.0 10.2 52 178-233 30-81 (271)
465 PRK12339 2-phosphoglycerate ki 93.4 0.078 1.7E-06 52.6 3.8 25 178-202 3-27 (197)
466 KOG1532 GTPase XAB1, interacts 93.4 0.4 8.7E-06 48.4 8.5 58 177-237 18-86 (366)
467 PRK14723 flhF flagellar biosyn 93.4 0.35 7.7E-06 57.3 9.7 88 178-270 185-273 (767)
468 TIGR01420 pilT_fam pilus retra 93.3 0.15 3.2E-06 55.8 6.2 112 177-300 121-232 (343)
469 smart00534 MUTSac ATPase domai 93.3 0.035 7.5E-07 54.8 1.2 116 180-303 1-127 (185)
470 TIGR01040 V-ATPase_V1_B V-type 93.3 0.27 5.8E-06 54.6 8.0 94 177-271 140-258 (466)
471 PRK09099 type III secretion sy 93.2 0.22 4.9E-06 55.4 7.5 91 177-271 162-264 (441)
472 PRK05057 aroK shikimate kinase 93.2 0.078 1.7E-06 51.6 3.5 24 179-202 5-28 (172)
473 TIGR01313 therm_gnt_kin carboh 93.2 0.061 1.3E-06 51.9 2.7 22 181-202 1-22 (163)
474 PRK13975 thymidylate kinase; P 93.2 0.082 1.8E-06 52.8 3.7 24 179-202 3-26 (196)
475 PRK00300 gmk guanylate kinase; 93.2 0.071 1.5E-06 53.7 3.3 25 178-202 5-29 (205)
476 PRK05688 fliI flagellum-specif 93.2 0.23 4.9E-06 55.4 7.4 90 177-271 167-269 (451)
477 PRK13948 shikimate kinase; Pro 93.2 0.085 1.8E-06 51.6 3.6 26 177-202 9-34 (182)
478 PRK03846 adenylylsulfate kinas 93.2 0.13 2.8E-06 51.4 5.0 27 176-202 22-48 (198)
479 cd01672 TMPK Thymidine monopho 93.1 0.21 4.5E-06 50.0 6.6 23 180-202 2-24 (200)
480 PRK10078 ribose 1,5-bisphospho 93.1 0.071 1.5E-06 52.7 3.1 24 179-202 3-26 (186)
481 PF12061 DUF3542: Protein of u 93.1 0.13 2.9E-06 52.4 5.0 76 12-94 297-372 (402)
482 PF13504 LRR_7: Leucine rich r 93.1 0.058 1.3E-06 29.7 1.4 15 587-601 2-16 (17)
483 COG2019 AdkA Archaeal adenylat 93.1 0.093 2E-06 48.9 3.5 48 178-238 4-51 (189)
484 PF03215 Rad17: Rad17 cell cyc 93.1 0.13 2.7E-06 59.0 5.4 54 158-216 20-78 (519)
485 COG0467 RAD55 RecA-superfamily 93.0 0.14 3E-06 53.7 5.4 50 176-230 21-70 (260)
486 PTZ00185 ATPase alpha subunit; 93.0 0.42 9.2E-06 53.4 9.0 93 177-271 188-300 (574)
487 COG0703 AroK Shikimate kinase 93.0 0.092 2E-06 49.9 3.5 24 179-202 3-26 (172)
488 PF05659 RPW8: Arabidopsis bro 93.0 0.49 1.1E-05 44.2 8.2 110 7-132 5-114 (147)
489 COG1224 TIP49 DNA helicase TIP 93.0 0.39 8.4E-06 50.5 8.1 54 155-209 37-95 (450)
490 TIGR02655 circ_KaiC circadian 93.0 0.53 1.1E-05 54.2 10.4 97 167-269 250-362 (484)
491 KOG0729 26S proteasome regulat 93.0 0.11 2.4E-06 51.7 4.1 45 158-202 178-235 (435)
492 PRK13946 shikimate kinase; Pro 93.0 0.09 2E-06 51.8 3.6 24 179-202 11-34 (184)
493 PF03193 DUF258: Protein of un 93.0 0.13 2.8E-06 48.7 4.4 35 165-202 25-59 (161)
494 cd00820 PEPCK_HprK Phosphoenol 93.0 0.09 1.9E-06 45.9 3.1 22 178-199 15-36 (107)
495 cd02027 APSK Adenosine 5'-phos 93.0 0.081 1.8E-06 50.1 3.1 23 180-202 1-23 (149)
496 PF13521 AAA_28: AAA domain; P 93.0 0.079 1.7E-06 51.1 3.1 21 181-201 2-22 (163)
497 PRK07721 fliI flagellum-specif 93.0 0.26 5.5E-06 55.2 7.5 91 176-271 156-259 (438)
498 PRK06793 fliI flagellum-specif 92.9 0.25 5.4E-06 54.8 7.3 92 177-272 155-258 (432)
499 COG1419 FlhF Flagellar GTP-bin 92.9 0.81 1.8E-05 49.7 10.8 88 177-269 202-290 (407)
500 COG0237 CoaE Dephospho-CoA kin 92.9 0.092 2E-06 52.0 3.5 23 178-200 2-24 (201)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-99 Score=892.33 Aligned_cols=840 Identities=40% Similarity=0.707 Sum_probs=704.8
Q ss_pred HHHHHHhhhhhhchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042817 17 FSHCLNCTERQVAFISELEDNLDALQAEMQKLIEVRDDVMTRVIIAEQQQMKRLNQVQGWLKRVEAVEAEVRELQRIQTQ 96 (922)
Q Consensus 17 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~a~~~~~~~~~~~~~Wl~~v~~~~~~~~d~~d~~~~ 96 (922)
++++++.+.+++..+.+.++++..+++++..|+.++.|+++ ++. ....++.|.+.+++++|+++|+++.|..
T Consensus 9 ~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a-------~~~-~~~~~~~~~e~~~~~~~~~e~~~~~~~v 80 (889)
T KOG4658|consen 9 VEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDA-------KRD-DLERRVNWEEDVGDLVYLAEDIIWLFLV 80 (889)
T ss_pred hhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh-------hcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888889999999999999999999999999643 222 2356789999999999999999998744
Q ss_pred hh----------------hcccccCccCCccccccchhHHHHHHHHHHHHHHhcCCcccccc-ccCCCCCccccCCCCcc
Q 042817 97 VI----------------NNLCLGGYCSKKCISSYKFGKEVSTKLKVLADLKDEGDFKDIAE-RTAKAPLIEEMPIEPRI 159 (922)
Q Consensus 97 ~~----------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 159 (922)
+. ++.|..+++.+.+...+.+++++.+++++++.+..++.|..+.. ..|+ .....+|..+..
T Consensus 81 ~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~-~~~e~~~~~~~~ 159 (889)
T KOG4658|consen 81 EEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPR-EKVETRPIQSES 159 (889)
T ss_pred HHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccch-hhcccCCCCccc
Confidence 32 22344466667777888999999999999999988876766553 2222 334445554444
Q ss_pred -cchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCc
Q 042817 160 -IGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFS 238 (922)
Q Consensus 160 -vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 238 (922)
||.+..++++++.|.+++..+++|+||||+||||||+.++|+...++++||.++||+||+.++...++++|++.++..+
T Consensus 160 ~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~ 239 (889)
T KOG4658|consen 160 DVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLD 239 (889)
T ss_pred cccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCC
Confidence 9999999999999998888999999999999999999999999448999999999999999999999999999999877
Q ss_pred ccccCCChhhhHHHHHHHhcCCcEEEEEccCCCccccccccccCCCCCCCcEEEEEcCChhhhcc-ccccceeecCCCCH
Q 042817 239 ESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPVDLTKVGVPIPNSTNASKVVFTTRYKEVCGK-MEAHKKLRVECLTA 317 (922)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTtR~~~v~~~-~~~~~~~~l~~L~~ 317 (922)
..+......+.+..|.+.|+.|||+|||||||+..+|+.++.++|...+||||++|||++.||.. +++...+++.+|++
T Consensus 240 ~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~ 319 (889)
T KOG4658|consen 240 EEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTP 319 (889)
T ss_pred cccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCc
Confidence 66666667899999999999999999999999999999999999999899999999999999998 88889999999999
Q ss_pred HHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHHHhhhccCCCHHHHHHHHHHHhcc-CCCCCCcc-chhh
Q 042817 318 DDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITIGRAMSCKNKLEEWKHAVNVLKKS-SSKFPGMD-AMYP 395 (922)
Q Consensus 318 ~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~~w~~~~~~l~~~-~~~~~~~~-~~~~ 395 (922)
+|||.||++.|+......++.++++|++++++|+|+|||+.++|+.|+.+.+..+|+++.+.+... ..+.++++ .+++
T Consensus 320 ~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~ 399 (889)
T KOG4658|consen 320 EEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILP 399 (889)
T ss_pred cccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHH
Confidence 999999999999886666677999999999999999999999999999999999999999999887 55555544 8999
Q ss_pred hhhhhcCCCCCchhhhhhhhcccCCCCCccCHHHHHHHHhhcCCccccccchhhHhhHHHHHHHHHHhccccccC----c
Q 042817 396 HLKFSYDRLPDNKIRSCFLYCSLFPEDYKISKEDLIDCWIGEEFFDEEHNGIGARNEGYAIIGDLIRTCLLEEDA----D 471 (922)
Q Consensus 396 ~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~~~~~~~~~~L~~~sll~~~~----~ 471 (922)
+|++||+.||+ ++|.||+|||+||+||.|+++.|+.+|+||||+++.+++..++++|+.|+.+|+++++++... .
T Consensus 400 iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~ 478 (889)
T KOG4658|consen 400 ILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRK 478 (889)
T ss_pred hhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccce
Confidence 99999999995 999999999999999999999999999999999997778899999999999999999999863 4
Q ss_pred ceEEEcceeehhHHHHHhhhhhccccEEEEcCCccccCCCccccccceEEeeecccccccccccCCCCceEEEeccCc--
Q 042817 472 DFVELHDVVRDMALWIASEIEKEKEEFFVHAGVGLTEAPGIEKWKGVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNR-- 549 (922)
Q Consensus 472 ~~~~mHdlv~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~-- 549 (922)
.+|+|||+||++|.+++++.+..++++++..+.+..+.|....+..+|++++.+|.+..++....+++|++|.+.+|.
T Consensus 479 ~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~ 558 (889)
T KOG4658|consen 479 ETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDW 558 (889)
T ss_pred eEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchh
Confidence 789999999999999999888888888888777777788888999999999999999999999999999999999995
Q ss_pred ccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeeeccCCccccchhhccCCCCCEEeCCCCccccccChhh
Q 042817 550 LSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSSTGIRVLPEELKALKDLSYLNMERTSFVRRIPRQL 629 (922)
Q Consensus 550 l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~ 629 (922)
+..++..+|..|+.|++|||++|..+.++|.+|++|.+||||+++++.|+.+|.++++|++|.+|++..+..+..+| ++
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i 637 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP-GI 637 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccccc-ch
Confidence 78889999999999999999999999999999999999999999999999999999999999999999998776665 44
Q ss_pred hCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCceEEEEEechhHHHHHhhcccccCcceEEEEcCccc
Q 042817 630 ISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKK 709 (922)
Q Consensus 630 i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 709 (922)
+..|++|++|.+.... ...+...+.++..|++|+.+.+...+...+..+.....+.+..+.+.+..+.
T Consensus 638 ~~~L~~Lr~L~l~~s~-----------~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~- 705 (889)
T KOG4658|consen 638 LLELQSLRVLRLPRSA-----------LSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCS- 705 (889)
T ss_pred hhhcccccEEEeeccc-----------cccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccc-
Confidence 6779999999998764 1245668889999999999998766653344444444444455555554432
Q ss_pred ccccccccccccccccceeeecccCCcceeecccccccCCCCCc-cCCcccEEEEecCCCCCCCchhhccCCCcEEEEec
Q 042817 710 ESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPETS-RFHNLHRVGIVNCKSLKDITWLIFAPNLRILEISY 788 (922)
Q Consensus 710 ~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~-~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~ 788 (922)
......++..+.+|++|.|.+|...+....+.... ... .|+++.++.+.+|.....+.|....|+|+.|.+..
T Consensus 706 --~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~----~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~ 779 (889)
T KOG4658|consen 706 --KRTLISSLGSLGNLEELSILDCGISEIVIEWEESL----IVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVS 779 (889)
T ss_pred --cceeecccccccCcceEEEEcCCCchhhccccccc----chhhhHHHHHHHHhhccccccccchhhccCcccEEEEec
Confidence 12233457889999999999999877545554321 111 37789999999999999999999999999999999
Q ss_pred cccchhhhcccccccccccCCCCCCccCCcccee-ecCccccccccccCCcCCCCccEEEecCCCCCCCCCCCCCcccc-
Q 042817 789 CFEMTEIISQAKVDEFGATAGNHHQIPFAKLESL-KLARLPNLESVYWTPLSFSHLKEIRIFKCPRLWKLPLDSNSAKE- 866 (922)
Q Consensus 789 c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L-~L~~~~~L~~l~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~l- 866 (922)
|..+++++........ .. .....|+++..+ .+.+.+.+..+.+.+..+++|+.+.+..||++..+|........
T Consensus 780 ~~~~e~~i~~~k~~~~--l~--~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~ 855 (889)
T KOG4658|consen 780 CRLLEDIIPKLKALLE--LK--ELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVG 855 (889)
T ss_pred ccccccCCCHHHHhhh--cc--cEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceec
Confidence 9999888763322111 00 124568888888 68888899999888889999999999999999999986544322
Q ss_pred --cceEEEccccccccccc-Cccccc
Q 042817 867 --RKIVIKGEIDWWHGLQF-DLATRN 889 (922)
Q Consensus 867 --~~l~I~g~~~~~~~l~~-~~~~~~ 889 (922)
..+....+.+|...+.| +..+..
T Consensus 856 ~~~~~~~~~~~~~~~~v~~~~~~~~~ 881 (889)
T KOG4658|consen 856 CEEKLKEYPDGEWLEGVYWEDELTKL 881 (889)
T ss_pred cccceeecCCccceeeEEehhhhhhh
Confidence 12222233456667778 555543
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=7e-64 Score=625.03 Aligned_cols=638 Identities=20% Similarity=0.274 Sum_probs=413.5
Q ss_pred CcccchhhHHHHHHHHhc--cCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEe---CCC-----------
Q 042817 157 PRIIGQESIFDDAWRCMI--EEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVV---SKD----------- 220 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~---s~~----------- 220 (922)
+.+|||++.++++..+|. .+++++|+|+||||+||||||+++|+.. ..+|++.+|+.. +..
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccccc
Confidence 568999999999998875 3578999999999999999999999987 678998888752 111
Q ss_pred CC-HHHHHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCccccccccccCCCCCCCcEEEEEcCChh
Q 042817 221 LN-LEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPVDLTKVGVPIPNSTNASKVVFTTRYKE 299 (922)
Q Consensus 221 ~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTtR~~~ 299 (922)
.+ ...++++++.++....+ .... ....+++.++++|+||||||||+..+|+.+.....+.++||+||||||++.
T Consensus 261 ~~~~~~l~~~~l~~il~~~~----~~~~-~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~ 335 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKD----IKIY-HLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKH 335 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCC----cccC-CHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHH
Confidence 01 12344555544422111 0111 124678889999999999999999999998877777789999999999999
Q ss_pred hhccccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHHHhhhccCCCHHHHHHHHHH
Q 042817 300 VCGKMEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITIGRAMSCKNKLEEWKHAVNV 379 (922)
Q Consensus 300 v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~~w~~~~~~ 379 (922)
++..++..++|+++.|++++||+||+.+||+.. .++..+.+++++|+++|+|+|||++++|+.|++ ++..+|+.++++
T Consensus 336 vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~ 413 (1153)
T PLN03210 336 FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPR 413 (1153)
T ss_pred HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHH
Confidence 998777788999999999999999999999765 344568899999999999999999999999997 578999999999
Q ss_pred HhccCCCCCCccchhhhhhhhcCCCCCchhhhhhhhcccCCCCCccCHHHHHHHHhhcCCccccccchhhHhhHHHHHHH
Q 042817 380 LKKSSSKFPGMDAMYPHLKFSYDRLPDNKIRSCFLYCSLFPEDYKISKEDLIDCWIGEEFFDEEHNGIGARNEGYAIIGD 459 (922)
Q Consensus 380 l~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~~~~~~~~~~ 459 (922)
++..... .+..+|++||++|+++..|.||+++|+||.++.++ .+..|++.+.+... ..++.
T Consensus 414 L~~~~~~-----~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~~-----------~~l~~ 474 (1153)
T PLN03210 414 LRNGLDG-----KIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDVN-----------IGLKN 474 (1153)
T ss_pred HHhCccH-----HHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCch-----------hChHH
Confidence 8864432 79999999999998745899999999999887654 47778877654322 12889
Q ss_pred HHHhccccccCcceEEEcceeehhHHHHHhhhh--hccccEEEEc---------CCc-------------ccc----CCC
Q 042817 460 LIRTCLLEEDADDFVELHDVVRDMALWIASEIE--KEKEEFFVHA---------GVG-------------LTE----APG 511 (922)
Q Consensus 460 L~~~sll~~~~~~~~~mHdlv~~~a~~~~~~~~--~~~~~~~~~~---------~~~-------------~~~----~~~ 511 (922)
|+++||++.. .+.+.|||++|+||++++.++. +.+..++... +.+ ... ...
T Consensus 475 L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~a 553 (1153)
T PLN03210 475 LVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENA 553 (1153)
T ss_pred HHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHH
Confidence 9999999875 4679999999999999987653 1122222111 000 000 001
Q ss_pred ccccccceEE-------------------------------eeecccccccccccCCCCceEEEeccCcccccchhhhcc
Q 042817 512 IEKWKGVKRM-------------------------------SLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQF 560 (922)
Q Consensus 512 ~~~~~~l~~l-------------------------------~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 560 (922)
+..+.+++.| .+.++.+..+|......+|+.|++.+|.+..++.+ +..
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~-~~~ 632 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG-VHS 632 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc-ccc
Confidence 2233444444 44444444444444455666666666655555544 455
Q ss_pred CCCceEEEccCCCCCcccCccccCcccCCeeeeccC-CccccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEE
Q 042817 561 MPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSST-GIRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVL 639 (922)
Q Consensus 561 l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~-~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L 639 (922)
+++|++|+|++|..+..+|. ++.+++|++|++++| .+..+|..++++++|+.|++++|..+..+|.. + ++++|++|
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L 709 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRL 709 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEE
Confidence 66666666666655555653 566666666666665 45566666666666666666666666666654 2 56666666
Q ss_pred EeecCCcccccccCcccccCccchHHHhhcCCCCceEEEEEechhHHHHHhhcccccCcceEEEEcCcccc-----cccc
Q 042817 640 RMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKE-----SESL 714 (922)
Q Consensus 640 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-----~~~~ 714 (922)
++++|..+... + ...++|+.|++..+....++ ... ...+|+.|.+.++... ...+
T Consensus 710 ~Lsgc~~L~~~-------------p---~~~~nL~~L~L~~n~i~~lP---~~~-~l~~L~~L~l~~~~~~~l~~~~~~l 769 (1153)
T PLN03210 710 NLSGCSRLKSF-------------P---DISTNISWLDLDETAIEEFP---SNL-RLENLDELILCEMKSEKLWERVQPL 769 (1153)
T ss_pred eCCCCCCcccc-------------c---cccCCcCeeecCCCcccccc---ccc-cccccccccccccchhhcccccccc
Confidence 66666533210 0 01234455555433322211 111 1234444444432210 0000
Q ss_pred cccccccccccceeeecccCCcceeecccccccCCCCCccCCcccEEEEecCCCCCCCchhhccCCCcEEEEeccccchh
Q 042817 715 RTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPETSRFHNLHRVGIVNCKSLKDITWLIFAPNLRILEISYCFEMTE 794 (922)
Q Consensus 715 ~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~ 794 (922)
.......+++|+.|.+++|....-.+..+ ..+++|+.|+|++|..++.+|....+++|+.|+|++|..+..
T Consensus 770 ~~~~~~~~~sL~~L~Ls~n~~l~~lP~si---------~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 770 TPLMTMLSPSLTRLFLSDIPSLVELPSSI---------QNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRT 840 (1153)
T ss_pred chhhhhccccchheeCCCCCCccccChhh---------hCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccc
Confidence 00111223566666666664433112222 236677777777777676666555667777777777766655
Q ss_pred hhccccccc--------ccccCCCCCCccCCccceeecCccccccccccCCcCCCCccEEEecCCCCCCCCCC
Q 042817 795 IISQAKVDE--------FGATAGNHHQIPFAKLESLKLARLPNLESVYWTPLSFSHLKEIRIFKCPRLWKLPL 859 (922)
Q Consensus 795 i~~~~~~~~--------~~~~~~~~~~~~fp~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C~~L~~lp~ 859 (922)
++.....-. ....+ .....+++|+.|.|.+|++|+.++.....+++|+.+.+.+|++|+.++.
T Consensus 841 ~p~~~~nL~~L~Ls~n~i~~iP--~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 841 FPDISTNISDLNLSRTGIEEVP--WWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred ccccccccCEeECCCCCCccCh--HHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccC
Confidence 432100000 00000 1234566777777777777777666666667777777777777766554
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=4.9e-45 Score=391.80 Aligned_cols=280 Identities=33% Similarity=0.624 Sum_probs=231.0
Q ss_pred hhhHHHHHHHHhcc--CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcc
Q 042817 162 QESIFDDAWRCMIE--EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSE 239 (922)
Q Consensus 162 r~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 239 (922)
||.++++|.+.|.+ ++.++|+|+||||+||||||++++++. ..+.+|+.++|+++++..+...++.+|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 78999999999988 789999999999999999999999996 468999999999999999999999999999987754
Q ss_pred cc-cCCChhhhHHHHHHHhcCCcEEEEEccCCCccccccccccCCCCCCCcEEEEEcCChhhhccccc-cceeecCCCCH
Q 042817 240 SW-KNKSPVEKSCAIFKILSNKKFVLLLDDMWEPVDLTKVGVPIPNSTNASKVVFTTRYKEVCGKMEA-HKKLRVECLTA 317 (922)
Q Consensus 240 ~~-~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTtR~~~v~~~~~~-~~~~~l~~L~~ 317 (922)
.. ...+..+....+++.|+++++||||||||+...|+.+...++....|++||||||+..++..+.. ...|++++|+.
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred ccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 33 45677889999999999999999999999999999998888877789999999999999877654 67899999999
Q ss_pred HHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHHHhhhccCCCHHHHHHHHHHHhccCCCCCC-ccchhhh
Q 042817 318 DDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITIGRAMSCKNKLEEWKHAVNVLKKSSSKFPG-MDAMYPH 396 (922)
Q Consensus 318 ~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~~w~~~~~~l~~~~~~~~~-~~~~~~~ 396 (922)
+||++||++.++..........++.+++|+++|+|+|||++++|++|+.+.+..+|+.+++.+.....+..+ ...+..+
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 239 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSA 239 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999987654334456788999999999999999999999997666778999999888776543332 3389999
Q ss_pred hhhhcCCCCCchhhhhhhhcccCCCCCccCHHHHHHHHhhcCCcccc
Q 042817 397 LKFSYDRLPDNKIRSCFLYCSLFPEDYKISKEDLIDCWIGEEFFDEE 443 (922)
Q Consensus 397 l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~W~a~g~i~~~ 443 (922)
+.+||+.||+ ++|.||+|||+||+++.|+++.++++|+++|++...
T Consensus 240 l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 240 LELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 9999999999 899999999999999999999999999999999765
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=2.6e-21 Score=243.41 Aligned_cols=333 Identities=18% Similarity=0.160 Sum_probs=217.3
Q ss_pred ccccceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeee
Q 042817 514 KWKGVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNL 593 (922)
Q Consensus 514 ~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L 593 (922)
.++++++|++++|.+....+...+++|++|++++|.+....+..++++++|++|+|++|.....+|..++++++|++|++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 56778888888887765444566788888888888777555556888888888888888445578888888888888888
Q ss_pred ccCCcc-ccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCC
Q 042817 594 SSTGIR-VLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNH 672 (922)
Q Consensus 594 ~~~~i~-~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~ 672 (922)
++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|... ...+..+..+++
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~-------------~~~p~~l~~l~~ 261 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLT-------------GPIPSSLGNLKN 261 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceec-------------cccChhHhCCCC
Confidence 888776 67888888888888888888766677776 788888888888887622 234556777888
Q ss_pred CceEEEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeecccccccCCCCC
Q 042817 673 LSVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPET 752 (922)
Q Consensus 673 L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~ 752 (922)
|+.|+++.+.... ..+.....+.+|+.|+++++.. .......+..+++|+.|++++|......+.++.
T Consensus 262 L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l--~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~-------- 329 (968)
T PLN00113 262 LQYLFLYQNKLSG--PIPPSIFSLQKLISLDLSDNSL--SGEIPELVIQLQNLEILHLFSNNFTGKIPVALT-------- 329 (968)
T ss_pred CCEEECcCCeeec--cCchhHhhccCcCEEECcCCee--ccCCChhHcCCCCCcEEECCCCccCCcCChhHh--------
Confidence 8888877554321 1112223356788888877652 111112256678888888888776553333333
Q ss_pred ccCCcccEEEEecCCCCCCCc-hhhccCCCcEEEEeccccchhhhcccc----ccc-------c-cccCCCCCCccCCcc
Q 042817 753 SRFHNLHRVGIVNCKSLKDIT-WLIFAPNLRILEISYCFEMTEIISQAK----VDE-------F-GATAGNHHQIPFAKL 819 (922)
Q Consensus 753 ~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~----~~~-------~-~~~~~~~~~~~fp~L 819 (922)
.+++|+.|+|++|.....+| .++.+++|+.|++++|.....++.... ... . ...+ .....+++|
T Consensus 330 -~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p--~~~~~~~~L 406 (968)
T PLN00113 330 -SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP--KSLGACRSL 406 (968)
T ss_pred -cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCC--HHHhCCCCC
Confidence 37788888888775443444 467778888888877643222221000 000 0 0000 123456788
Q ss_pred ceeecCccccccccccCCcCCCCccEEEecCCCCCCCCCCCC-CcccccceEEEccc
Q 042817 820 ESLKLARLPNLESVYWTPLSFSHLKEIRIFKCPRLWKLPLDS-NSAKERKIVIKGEI 875 (922)
Q Consensus 820 ~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C~~L~~lp~~~-~~~~l~~l~I~g~~ 875 (922)
+.|.+.+|.--..++.....+++|+.|++++|.--..+|... ..+.++.+.+.+|.
T Consensus 407 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 463 (968)
T PLN00113 407 RRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463 (968)
T ss_pred CEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCce
Confidence 888888775544555555667888888888765333344321 23556777777664
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=7e-21 Score=239.45 Aligned_cols=330 Identities=19% Similarity=0.178 Sum_probs=157.0
Q ss_pred ccccccceEEeeecccccc-ccc-ccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCC
Q 042817 512 IEKWKGVKRMSLMNNKIRN-LSE-PATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQ 589 (922)
Q Consensus 512 ~~~~~~l~~l~l~~~~~~~-~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 589 (922)
+..+++++.|++++|.+.. +|. ...+++|++|++++|.+....+..++++++|++|+|++|.....+|..++++++|+
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 239 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239 (968)
T ss_pred HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCC
Confidence 3344555555555555432 221 24455555565555555444444455555566666555533334555555555566
Q ss_pred eeeeccCCcc-ccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhh
Q 042817 590 YLNLSSTGIR-VLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELL 668 (922)
Q Consensus 590 ~L~L~~~~i~-~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 668 (922)
+|++++|.+. .+|..++++++|++|++++|.....+|.. +.++++|++|++++|... ...+..+.
T Consensus 240 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~-------------~~~p~~~~ 305 (968)
T PLN00113 240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKLISLDLSDNSLS-------------GEIPELVI 305 (968)
T ss_pred EEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh-HhhccCcCEEECcCCeec-------------cCCChhHc
Confidence 6666555554 45555555555566655555544444544 455555555555555421 11233344
Q ss_pred cCCCCceEEEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeeccccccc-
Q 042817 669 CLNHLSVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIR- 747 (922)
Q Consensus 669 ~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~- 747 (922)
.+++|+.|++..+.... ..+......++|+.|.++++... ......+..+++|+.|++++|.+....+.++....
T Consensus 306 ~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~l~--~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~ 381 (968)
T PLN00113 306 QLQNLEILHLFSNNFTG--KIPVALTSLPRLQVLQLWSNKFS--GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN 381 (968)
T ss_pred CCCCCcEEECCCCccCC--cCChhHhcCCCCCEEECcCCCCc--CcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCC
Confidence 55555555554433211 01111222345555555554310 01111244455566666655554432222221100
Q ss_pred -------------CC-CCCccCCcccEEEEecCCCCCCCc-hhhccCCCcEEEEeccccchhhhcccccccccccCCCCC
Q 042817 748 -------------KT-PETSRFHNLHRVGIVNCKSLKDIT-WLIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHH 812 (922)
Q Consensus 748 -------------~~-~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~ 812 (922)
.. .....+++|+.|++++|.-...+| .+..+++|+.|++++|. +...+. ..
T Consensus 382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~-------------~~ 447 (968)
T PLN00113 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN-LQGRIN-------------SR 447 (968)
T ss_pred CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc-ccCccC-------------hh
Confidence 00 001124455555555553222222 24455555555555542 221111 12
Q ss_pred CccCCccceeecCccccccccccCCcCCCCccEEEecCCCCCCCCCCCC-CcccccceEEEcc
Q 042817 813 QIPFAKLESLKLARLPNLESVYWTPLSFSHLKEIRIFKCPRLWKLPLDS-NSAKERKIVIKGE 874 (922)
Q Consensus 813 ~~~fp~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C~~L~~lp~~~-~~~~l~~l~I~g~ 874 (922)
...+++|+.|.+++|.....++.. ...++|+.|++++|.-...+|... ....++.+.++++
T Consensus 448 ~~~l~~L~~L~L~~n~~~~~~p~~-~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 509 (968)
T PLN00113 448 KWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN 509 (968)
T ss_pred hccCCCCcEEECcCceeeeecCcc-cccccceEEECcCCccCCccChhhhhhhccCEEECcCC
Confidence 345677777777776554444432 234677777777765444555432 2234566666654
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=6.7e-20 Score=230.21 Aligned_cols=332 Identities=20% Similarity=0.291 Sum_probs=209.9
Q ss_pred EEcCCccccCCCccccccceEEeeecccccccccc-cCCCCceEEEeccC-cccccchhhhccCCCceEEEccCCCCCcc
Q 042817 500 VHAGVGLTEAPGIEKWKGVKRMSLMNNKIRNLSEP-ATCPHLLTLFLQNN-RLSNITANFFQFMPSLKVLNLSNNFSLRE 577 (922)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L~L~~~~~l~~ 577 (922)
...+.....+|....+.+++.|++.++.+..++.. ..+++|+.|+++++ .+..+|. ++.+++|+.|+|++|..+..
T Consensus 595 ~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~ 672 (1153)
T PLN03210 595 RWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVE 672 (1153)
T ss_pred EecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccc
Confidence 33344455566555678999999999999887654 67999999999987 4556654 78899999999999988999
Q ss_pred cCccccCcccCCeeeeccC-CccccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCccc
Q 042817 578 FPPGISKLISLQYLNLSST-GIRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVL 656 (922)
Q Consensus 578 lp~~i~~L~~L~~L~L~~~-~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 656 (922)
+|.+++++++|++|++++| .++.+|..+ ++++|++|++++|..+..+|.. .++|++|++.++.... .
T Consensus 673 lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~~-l------ 740 (1153)
T PLN03210 673 LPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIEE-F------ 740 (1153)
T ss_pred cchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCcccc-c------
Confidence 9999999999999999997 788999876 7999999999999888887752 4678899998876321 0
Q ss_pred ccCccchHHHhhcCCCCceEEEEEechhHHHH----H-hhcccccCcceEEEEcCccccccccccc--ccccccccceee
Q 042817 657 FNGGEILIEELLCLNHLSVLSVCLESDQALRK----F-LSSYRLKSSTQTLRLRKLKKESESLRTL--SLTDMEKLRNLF 729 (922)
Q Consensus 657 ~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~----l-~~~~~~~~~L~~L~l~~~~~~~~~~~~l--~l~~~~~L~~L~ 729 (922)
+. ...+++|..|.+.......+.. + ......+.+|+.|.++++. .+..+ .+..+++|+.|+
T Consensus 741 -------P~-~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~----~l~~lP~si~~L~~L~~L~ 808 (1153)
T PLN03210 741 -------PS-NLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP----SLVELPSSIQNLHKLEHLE 808 (1153)
T ss_pred -------cc-cccccccccccccccchhhccccccccchhhhhccccchheeCCCCC----CccccChhhhCCCCCCEEE
Confidence 00 0123344444333211100000 0 0000112344444444443 11111 133444444444
Q ss_pred ecccCCcceeecccc-------------cccCCCCCccCCcccEEEEecCCCCCCCc-hhhccCCCcEEEEeccccchhh
Q 042817 730 IADSSFEKLQIDCVG-------------EIRKTPETSRFHNLHRVGIVNCKSLKDIT-WLIFAPNLRILEISYCFEMTEI 795 (922)
Q Consensus 730 i~~~~~~~l~~~~~~-------------~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i 795 (922)
+++|...+..+.... .+...+ ....+|+.|+|+++ .++.+| ++..+++|+.|+|++|+.++.+
T Consensus 809 Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p--~~~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l 885 (1153)
T PLN03210 809 IENCINLETLPTGINLESLESLDLSGCSRLRTFP--DISTNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRV 885 (1153)
T ss_pred CCCCCCcCeeCCCCCccccCEEECCCCCcccccc--ccccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCcc
Confidence 444432221011000 000000 01346667776665 455555 4778999999999999999887
Q ss_pred hcccccccccccCCCCCCccCCccceeecCccccccccccCC-------------cCCCCccEEEecCCCCCCCCCCCCC
Q 042817 796 ISQAKVDEFGATAGNHHQIPFAKLESLKLARLPNLESVYWTP-------------LSFSHLKEIRIFKCPRLWKLPLDSN 862 (922)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~l~~~~-------------~~~p~L~~L~i~~C~~L~~lp~~~~ 862 (922)
+. ....+++|+.|.+.+|++|..++... ..+|+...+.+.+|.+|..-+....
T Consensus 886 ~~--------------~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a~l~~ 951 (1153)
T PLN03210 886 SL--------------NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEALLQQ 951 (1153)
T ss_pred Cc--------------ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchhhhcc
Confidence 65 45678999999999999998765422 1255667778889988876443222
Q ss_pred cccccceEEEcc
Q 042817 863 SAKERKIVIKGE 874 (922)
Q Consensus 863 ~~~l~~l~I~g~ 874 (922)
......+.+.|.
T Consensus 952 ~~~~~~~~l~g~ 963 (1153)
T PLN03210 952 QSIFKQLILSGE 963 (1153)
T ss_pred cccceEEECCCc
Confidence 222234445554
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=6.3e-23 Score=218.24 Aligned_cols=325 Identities=20% Similarity=0.302 Sum_probs=222.3
Q ss_pred EEEEcCCccccCC-CccccccceEEeeecccccccc-cccCCCCceEEEeccCccc--ccchhhhccCCCceEEEccCCC
Q 042817 498 FFVHAGVGLTEAP-GIEKWKGVKRMSLMNNKIRNLS-EPATCPHLLTLFLQNNRLS--NITANFFQFMPSLKVLNLSNNF 573 (922)
Q Consensus 498 ~~~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~~~l~--~~~~~~~~~l~~L~~L~L~~~~ 573 (922)
|+.....++..+| .++.+.++.+|++.+|++..+. ..+.++.||.+++..|++. ++|++ +-+|..|.+||||+|
T Consensus 36 WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShN- 113 (1255)
T KOG0444|consen 36 WLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHN- 113 (1255)
T ss_pred EEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCch-hcccccceeeecchh-
Confidence 4444444555555 4667889999999999987754 4488999999999999654 67888 446999999999999
Q ss_pred CCcccCccccCcccCCeeeeccCCccccchh-hccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCccccccc
Q 042817 574 SLREFPPGISKLISLQYLNLSSTGIRVLPEE-LKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEH 652 (922)
Q Consensus 574 ~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~ 652 (922)
.+++.|..+..-+++-.|+||+|+|..+|.. +-+|+.|-+|||++|. +..+|+. +..|.+|++|.+++|..
T Consensus 114 qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ-~RRL~~LqtL~Ls~NPL------ 185 (1255)
T KOG0444|consen 114 QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQ-IRRLSMLQTLKLSNNPL------ 185 (1255)
T ss_pred hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHH-HHHHhhhhhhhcCCChh------
Confidence 9999999999999999999999999999976 5689999999999997 7999998 89999999999999873
Q ss_pred CcccccCccchHHHhhcCCCCceEEEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccc--cccccccceeee
Q 042817 653 GSVLFNGGEILIEELLCLNHLSVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLS--LTDMEKLRNLFI 730 (922)
Q Consensus 653 ~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--l~~~~~L~~L~i 730 (922)
...-+..|.++++|+.|.++.... .+..++.++..+.+|..++++.+. +..++ +-.+++|+.|++
T Consensus 186 -------~hfQLrQLPsmtsL~vLhms~TqR-Tl~N~Ptsld~l~NL~dvDlS~N~-----Lp~vPecly~l~~LrrLNL 252 (1255)
T KOG0444|consen 186 -------NHFQLRQLPSMTSLSVLHMSNTQR-TLDNIPTSLDDLHNLRDVDLSENN-----LPIVPECLYKLRNLRRLNL 252 (1255)
T ss_pred -------hHHHHhcCccchhhhhhhcccccc-hhhcCCCchhhhhhhhhccccccC-----CCcchHHHhhhhhhheecc
Confidence 223456667777777777764332 233344444445577777776653 22222 667788888888
Q ss_pred cccCCcceeecccccccCCCCCccCCcccEEEEecCCCCCCCch-hhccCCCcEEEEecccc-chhhhccc---------
Q 042817 731 ADSSFEKLQIDCVGEIRKTPETSRFHNLHRVGIVNCKSLKDITW-LIFAPNLRILEISYCFE-MTEIISQA--------- 799 (922)
Q Consensus 731 ~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~~-l~~i~~~~--------- 799 (922)
++|.+.++.... ..-.+|++|+++.+ .++.+|. +..|++|+.|.+.++.. .+.||..-
T Consensus 253 S~N~iteL~~~~----------~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf 321 (1255)
T KOG0444|consen 253 SGNKITELNMTE----------GEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVF 321 (1255)
T ss_pred CcCceeeeeccH----------HHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHH
Confidence 888877643211 11346777777765 5555553 56666666666544211 11111100
Q ss_pred --ccccccccCCCCCCccCCccceeecCccccccccccCCcCCCCccEEEecCCCCCCCCCC
Q 042817 800 --KVDEFGATAGNHHQIPFAKLESLKLARLPNLESVYWTPLSFSHLKEIRIFKCPRLWKLPL 859 (922)
Q Consensus 800 --~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C~~L~~lp~ 859 (922)
.+.....++ ..+..+++|++|.|++ ..|-.+|....-+|.|+.|++++.|+|.--|-
T Consensus 322 ~aanN~LElVP--EglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 322 HAANNKLELVP--EGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred HhhccccccCc--hhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 000000011 2445567777777753 56666776666677777777777777775554
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=5.4e-21 Score=202.81 Aligned_cols=323 Identities=20% Similarity=0.238 Sum_probs=175.3
Q ss_pred ceEEeeecccccccccc--cCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccC-ccccCcccCCeeeec
Q 042817 518 VKRMSLMNNKIRNLSEP--ATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFP-PGISKLISLQYLNLS 594 (922)
Q Consensus 518 l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~L~ 594 (922)
+..|++.+|.|.++... +.++.||+|+|+.|.+..++...|..=.++++|+|++| .++.+- ..|..+.+|-+|.|+
T Consensus 127 l~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 127 LEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLS 205 (873)
T ss_pred eeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeecc
Confidence 55555555555544322 44555555555555555555444554455555555555 444332 234455555555555
Q ss_pred cCCccccch-hhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCC
Q 042817 595 STGIRVLPE-ELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHL 673 (922)
Q Consensus 595 ~~~i~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L 673 (922)
.|+|+.+|. .|.+|++|+.|+|..|. +..+---.+..|++|+.|.+..|.... -.-..+-.+.++
T Consensus 206 rNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~k-------------L~DG~Fy~l~km 271 (873)
T KOG4194|consen 206 RNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISK-------------LDDGAFYGLEKM 271 (873)
T ss_pred cCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCccc-------------ccCcceeeeccc
Confidence 555555553 34445555555555554 232221224555555555555444211 011123345556
Q ss_pred ceEEEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeecccccccCCCCCc
Q 042817 674 SVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPETS 753 (922)
Q Consensus 674 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~ 753 (922)
+.|++..+....+.. ...-.++.|+.|+++++. ...+..-...-+++|+.|+++.|.+.+++...+..
T Consensus 272 e~l~L~~N~l~~vn~--g~lfgLt~L~~L~lS~Na--I~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~-------- 339 (873)
T KOG4194|consen 272 EHLNLETNRLQAVNE--GWLFGLTSLEQLDLSYNA--IQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV-------- 339 (873)
T ss_pred ceeecccchhhhhhc--ccccccchhhhhccchhh--hheeecchhhhcccceeEeccccccccCChhHHHH--------
Confidence 666665554433221 112224566666666654 22222223455677777777777777666555543
Q ss_pred cCCcccEEEEecCCCCCCCc--hhhccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCccceeecCcccccc
Q 042817 754 RFHNLHRVGIVNCKSLKDIT--WLIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLESLKLARLPNLE 831 (922)
Q Consensus 754 ~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~ 831 (922)
++.|+.|+|+++ ++..+. .+..+.+|+.|+|+++ .+.-.++... ..+.++|+|++|.+.+ .+++
T Consensus 340 -L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N-~ls~~IEDaa----------~~f~gl~~LrkL~l~g-Nqlk 405 (873)
T KOG4194|consen 340 -LSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSN-ELSWCIEDAA----------VAFNGLPSLRKLRLTG-NQLK 405 (873)
T ss_pred -HHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCC-eEEEEEecch----------hhhccchhhhheeecC-ceee
Confidence 677777777776 555542 3556778888888763 3433333110 2456689999999988 5889
Q ss_pred ccccC-CcCCCCccEEEecCCCCCCC-CCCCCCcccccceEEE------ccccccccccc
Q 042817 832 SVYWT-PLSFSHLKEIRIFKCPRLWK-LPLDSNSAKERKIVIK------GEIDWWHGLQF 883 (922)
Q Consensus 832 ~l~~~-~~~~p~L~~L~i~~C~~L~~-lp~~~~~~~l~~l~I~------g~~~~~~~l~~ 883 (922)
+++.. ...+++|++|++.+.+ +.+ =|....+..++++.+. +|+--|- .+|
T Consensus 406 ~I~krAfsgl~~LE~LdL~~Na-iaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl-~qW 463 (873)
T KOG4194|consen 406 SIPKRAFSGLEALEHLDLGDNA-IASIQPNAFEPMELKELVMNSSSFLCDCQLKWL-AQW 463 (873)
T ss_pred ecchhhhccCcccceecCCCCc-ceeecccccccchhhhhhhcccceEEeccHHHH-HHH
Confidence 88863 4458999999998754 444 3333334445555544 4654443 356
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.79 E-value=3.3e-20 Score=196.90 Aligned_cols=319 Identities=17% Similarity=0.241 Sum_probs=235.7
Q ss_pred ccccccceEEeeecccccccccccC-CCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCc-cccCcccCC
Q 042817 512 IEKWKGVKRMSLMNNKIRNLSEPAT-CPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPP-GISKLISLQ 589 (922)
Q Consensus 512 ~~~~~~l~~l~l~~~~~~~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~ 589 (922)
+..+++++.+++..|.+..+|.... ..+|+.|+|.+|.+..+..+.++.++.||.||||.| .+.++|. ++..=.+++
T Consensus 98 f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~ 176 (873)
T KOG4194|consen 98 FYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIK 176 (873)
T ss_pred HhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCce
Confidence 4556788888888888888888755 445999999999988888888888999999999999 8887773 466667899
Q ss_pred eeeeccCCccccc-hhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhh
Q 042817 590 YLNLSSTGIRVLP-EELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELL 668 (922)
Q Consensus 590 ~L~L~~~~i~~lp-~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 668 (922)
+|+|++|.|+.+- ..|.+|.+|-.|.|+.|+ +..+|..++++|++|+.|++..|..- ....-.+.
T Consensus 177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~ir-------------ive~ltFq 242 (873)
T KOG4194|consen 177 KLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIR-------------IVEGLTFQ 242 (873)
T ss_pred EEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhcccccee-------------eehhhhhc
Confidence 9999999998775 357888899999999997 68888888899999999999887621 11233456
Q ss_pred cCCCCceEEEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeecccccccC
Q 042817 669 CLNHLSVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRK 748 (922)
Q Consensus 669 ~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~ 748 (922)
.|++|+.|.+..+....+.. ..+-.+..++.|+|+.+. ...+..-.+.+++.|+.|+++.|.+..+.++.-.
T Consensus 243 gL~Sl~nlklqrN~I~kL~D--G~Fy~l~kme~l~L~~N~--l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws---- 314 (873)
T KOG4194|consen 243 GLPSLQNLKLQRNDISKLDD--GAFYGLEKMEHLNLETNR--LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS---- 314 (873)
T ss_pred CchhhhhhhhhhcCcccccC--cceeeecccceeecccch--hhhhhcccccccchhhhhccchhhhheeecchhh----
Confidence 67777777776555544432 122235678888888765 2223333477899999999999998887655433
Q ss_pred CCCCccCCcccEEEEecCCCCCCCch--hhccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCccceeecCc
Q 042817 749 TPETSRFHNLHRVGIVNCKSLKDITW--LIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLESLKLAR 826 (922)
Q Consensus 749 ~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~ 826 (922)
..++|+.|+|+++ .++.++. +..|..|+.|.|+. +.+..+-. ..+..+.+|++|+|++
T Consensus 315 -----ftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e-------------~af~~lssL~~LdLr~ 374 (873)
T KOG4194|consen 315 -----FTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSH-NSIDHLAE-------------GAFVGLSSLHKLDLRS 374 (873)
T ss_pred -----hcccceeEecccc-ccccCChhHHHHHHHhhhhcccc-cchHHHHh-------------hHHHHhhhhhhhcCcC
Confidence 2789999999987 6777753 77899999999997 56777754 3667789999999987
Q ss_pred ccc---ccccccCCcCCCCccEEEecCCCCCCCCCCCCCc--ccccceEEEcc
Q 042817 827 LPN---LESVYWTPLSFSHLKEIRIFKCPRLWKLPLDSNS--AKERKIVIKGE 874 (922)
Q Consensus 827 ~~~---L~~l~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~--~~l~~l~I~g~ 874 (922)
..- +++-......+|+|++|.+.| .+|+.+|..... ..++.+++.+.
T Consensus 375 N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 375 NELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred CeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCC
Confidence 432 111112233489999999999 799999964332 34566666554
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.78 E-value=5e-21 Score=203.96 Aligned_cols=292 Identities=22% Similarity=0.278 Sum_probs=215.2
Q ss_pred CCCccccccceEEeeecccccccccc-cCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCccc
Q 042817 509 APGIEKWKGVKRMSLMNNKIRNLSEP-ATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLIS 587 (922)
Q Consensus 509 ~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~ 587 (922)
.+.+.++..+..|+++.|++...|.. ...+++-+|+|++|++..+|...|.++..|-+||||+| .++.+|+.+..|.+
T Consensus 96 P~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~ 174 (1255)
T KOG0444|consen 96 PTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSM 174 (1255)
T ss_pred CchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhh
Confidence 35667788899999999998888765 66788889999999999999888889999999999998 89999999999999
Q ss_pred CCeeeeccCCccccc-hhhccCCCCCEEeCCCCcc-ccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHH
Q 042817 588 LQYLNLSSTGIRVLP-EELKALKDLSYLNMERTSF-VRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIE 665 (922)
Q Consensus 588 L~~L~L~~~~i~~lp-~~l~~l~~L~~L~l~~~~~-l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 665 (922)
|++|.|++|.+..+. ..+..+++|++|.+++++. +..+|.+ +..|.||+.++++.|.. ...++
T Consensus 175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~L--------------p~vPe 239 (1255)
T KOG0444|consen 175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSENNL--------------PIVPE 239 (1255)
T ss_pred hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccccCC--------------CcchH
Confidence 999999998665221 2344578888999988753 4567876 78889999999987752 23677
Q ss_pred HhhcCCCCceEEEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccc--cccccccceeeecccCCcceeeccc
Q 042817 666 ELLCLNHLSVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLS--LTDMEKLRNLFIADSSFEKLQIDCV 743 (922)
Q Consensus 666 ~L~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--l~~~~~L~~L~i~~~~~~~l~~~~~ 743 (922)
.+-++++|+.|+++.+....+. .......++++|+++.+. +..++ +..++.|+.|.+.+|.+.- +.+
T Consensus 240 cly~l~~LrrLNLS~N~iteL~---~~~~~W~~lEtLNlSrNQ-----Lt~LP~avcKL~kL~kLy~n~NkL~F---eGi 308 (1255)
T KOG0444|consen 240 CLYKLRNLRRLNLSGNKITELN---MTEGEWENLETLNLSRNQ-----LTVLPDAVCKLTKLTKLYANNNKLTF---EGI 308 (1255)
T ss_pred HHhhhhhhheeccCcCceeeee---ccHHHHhhhhhhccccch-----hccchHHHhhhHHHHHHHhccCcccc---cCC
Confidence 7888889999988766544322 111223467777777764 33333 6778888888887776432 211
Q ss_pred ccccCCCCCccCCcccEEEEecCCCCCCCc-hhhccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCcccee
Q 042817 744 GEIRKTPETSRFHNLHRVGIVNCKSLKDIT-WLIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLESL 822 (922)
Q Consensus 744 ~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L 822 (922)
+.+++.+.+|+.+...++ +++-+| .+..+++|+.|.|+ |+.+-.+|. ...-+|.|+.|
T Consensus 309 -----PSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~-~NrLiTLPe--------------aIHlL~~l~vL 367 (1255)
T KOG0444|consen 309 -----PSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLD-HNRLITLPE--------------AIHLLPDLKVL 367 (1255)
T ss_pred -----ccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhccc-ccceeechh--------------hhhhcCCccee
Confidence 123455888888888876 677666 48889999999997 466766765 56778999999
Q ss_pred ecCccccccccccCCcCCCCccEEEe
Q 042817 823 KLARLPNLESVYWTPLSFSHLKEIRI 848 (922)
Q Consensus 823 ~L~~~~~L~~l~~~~~~~p~L~~L~i 848 (922)
++.+.|+|..-|.....-.+|+.-+|
T Consensus 368 DlreNpnLVMPPKP~da~~~lefYNI 393 (1255)
T KOG0444|consen 368 DLRENPNLVMPPKPNDARKKLEFYNI 393 (1255)
T ss_pred eccCCcCccCCCCcchhhhcceeeec
Confidence 99999999876543333344554444
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.67 E-value=1.5e-18 Score=176.82 Aligned_cols=323 Identities=21% Similarity=0.282 Sum_probs=195.8
Q ss_pred CCCccccccceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccC
Q 042817 509 APGIEKWKGVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISL 588 (922)
Q Consensus 509 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L 588 (922)
.|.++.+.++..|++..|++..+|++..|..|..|.+..|.++-+|.+...++++|.+|||+.| .++++|+.++.|.+|
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL 277 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSL 277 (565)
T ss_pred ChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhh
Confidence 3567788899999999999999999999999999999999999999998889999999999999 999999999999999
Q ss_pred CeeeeccCCccccchhhccCCCCCEEeCCCCccccccChhhhCCCCC--CCEEEee-cCCcccccccCccc-ccCccchH
Q 042817 589 QYLNLSSTGIRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPL--LRVLRML-DCGALERAEHGSVL-FNGGEILI 664 (922)
Q Consensus 589 ~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~--L~~L~l~-~~~~~~~~~~~~~~-~~~~~~~~ 664 (922)
.+||+++|.|+.+|.+++++ .|+.|-+.||+ +..+-.+++++=+. |++|.=. .|..+......... ........
T Consensus 278 ~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~ 355 (565)
T KOG0472|consen 278 ERLDLSNNDISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESF 355 (565)
T ss_pred hhhcccCCccccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcc
Confidence 99999999999999999999 99999999997 56665554433221 2222110 01101000000000 00011122
Q ss_pred HHhhcCCCCceEEEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccc--cccccccceeeecccCCcceeecc
Q 042817 665 EELLCLNHLSVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLS--LTDMEKLRNLFIADSSFEKLQIDC 742 (922)
Q Consensus 665 ~~L~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--l~~~~~L~~L~i~~~~~~~l~~~~ 742 (922)
.....+.+.+.|+++....+.++.-........-....+++.+. +..++ +..+..+.+.-+..++...+.+..
T Consensus 356 ~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNq-----L~elPk~L~~lkelvT~l~lsnn~isfv~~~ 430 (565)
T KOG0472|consen 356 PDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQ-----LCELPKRLVELKELVTDLVLSNNKISFVPLE 430 (565)
T ss_pred cchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccch-----HhhhhhhhHHHHHHHHHHHhhcCccccchHH
Confidence 22333445555555433322221111101111123334444332 11111 222333333333333333322222
Q ss_pred cccccCCCCCccCCcccEEEEecCCCCCCCc-hhhccCCCcEEEEeccccchhhhccc-----------ccccccccCCC
Q 042817 743 VGEIRKTPETSRFHNLHRVGIVNCKSLKDIT-WLIFAPNLRILEISYCFEMTEIISQA-----------KVDEFGATAGN 810 (922)
Q Consensus 743 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~-----------~~~~~~~~~~~ 810 (922)
++ .+++|..|+|+++ -+.++| .++.+..|+.|+|+.. ....+|..- ...+..+...
T Consensus 431 l~---------~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~- 498 (565)
T KOG0472|consen 431 LS---------QLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDP- 498 (565)
T ss_pred HH---------hhhcceeeecccc-hhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccCh-
Confidence 22 2666777777665 344444 3556666777777653 344333210 0001111110
Q ss_pred CCCccCCccceeecCccccccccccCCcCCCCccEEEecCCC
Q 042817 811 HHQIPFAKLESLKLARLPNLESVYWTPLSFSHLKEIRIFKCP 852 (922)
Q Consensus 811 ~~~~~fp~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C~ 852 (922)
...+.+.+|.+|++.+ ..+..+|...++|.+|++|++.|.|
T Consensus 499 ~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 499 SGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred HHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 2466788889999977 5788899888999999999998865
No 12
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.67 E-value=1.2e-15 Score=181.81 Aligned_cols=161 Identities=24% Similarity=0.324 Sum_probs=116.7
Q ss_pred ccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCC-CcccCcc-ccCcccCCeeeeccC-Cccccchh
Q 042817 528 IRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFS-LREFPPG-ISKLISLQYLNLSST-GIRVLPEE 604 (922)
Q Consensus 528 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~-l~~lp~~-i~~L~~L~~L~L~~~-~i~~lp~~ 604 (922)
....+........|...+.+|.+..++.. ...+.|+.|-+.++.. +..++.. |..++.|++|||++| .+.+||++
T Consensus 513 ~~~~~~~~~~~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~ 590 (889)
T KOG4658|consen 513 LSEIPQVKSWNSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS 590 (889)
T ss_pred ccccccccchhheeEEEEeccchhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH
Confidence 33455566677889999998877666654 2345899999998842 5565544 777999999999987 78899999
Q ss_pred hccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCceEEEEEechh
Q 042817 605 LKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSVLSVCLESDQ 684 (922)
Q Consensus 605 l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~ 684 (922)
+++|-+|++|+++++. +..+|.+ +++|.+|.+|++..+..+. .....+..|++|++|.+......
T Consensus 591 I~~Li~LryL~L~~t~-I~~LP~~-l~~Lk~L~~Lnl~~~~~l~-------------~~~~i~~~L~~Lr~L~l~~s~~~ 655 (889)
T KOG4658|consen 591 IGELVHLRYLDLSDTG-ISHLPSG-LGNLKKLIYLNLEVTGRLE-------------SIPGILLELQSLRVLRLPRSALS 655 (889)
T ss_pred HhhhhhhhcccccCCC-ccccchH-HHHHHhhheeccccccccc-------------cccchhhhcccccEEEeeccccc
Confidence 9999999999999997 6899998 9999999999999877442 12444556888998888654322
Q ss_pred HHHHHhhcccccCcceEEEEc
Q 042817 685 ALRKFLSSYRLKSSTQTLRLR 705 (922)
Q Consensus 685 ~~~~l~~~~~~~~~L~~L~l~ 705 (922)
...........+.+|+.+++.
T Consensus 656 ~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 656 NDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred cchhhHHhhhcccchhhheee
Confidence 222222222334455555543
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.56 E-value=4.5e-16 Score=174.90 Aligned_cols=101 Identities=31% Similarity=0.427 Sum_probs=77.9
Q ss_pred cceEEeeecccccccccc-cCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeeecc
Q 042817 517 GVKRMSLMNNKIRNLSEP-ATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSS 595 (922)
Q Consensus 517 ~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~ 595 (922)
++.+|++++|.+..+|.. ..+.+|+.|.++.|.+...|.. ..+|.+|++|+|.+| .+..+|.++..+.+|++|++++
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s-~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSS-CSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchh-hhhhhcchhheeccc-hhhcCchhHHhhhcccccccch
Confidence 477888888888777654 5677888888888877777744 778888888888888 7888888888888888888888
Q ss_pred CCccccchhhccCCCCCEEeCCCC
Q 042817 596 TGIRVLPEELKALKDLSYLNMERT 619 (922)
Q Consensus 596 ~~i~~lp~~l~~l~~L~~L~l~~~ 619 (922)
|.+..+|..+..+..+..+..++|
T Consensus 124 N~f~~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 124 NHFGPIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred hccCCCchhHHhhhHHHHHhhhcc
Confidence 888877777666666666666665
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.53 E-value=4.6e-17 Score=165.98 Aligned_cols=257 Identities=25% Similarity=0.346 Sum_probs=144.8
Q ss_pred ceEEeeeccccccccc-ccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeeeccC
Q 042817 518 VKRMSLMNNKIRNLSE-PATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSST 596 (922)
Q Consensus 518 l~~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~ 596 (922)
+..+.++.|.+..+.+ ...+..|.+|.+++|.+...|+. ++.+..++.|+.+.+ .+.++|+.++.+..|+.|++++|
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~a-ig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAA-IGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHH-HHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhcccc
Confidence 4445555565554432 25556666666666666666655 555666666666666 66666666666666666666666
Q ss_pred CccccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCceE
Q 042817 597 GIRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSVL 676 (922)
Q Consensus 597 ~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L 676 (922)
.+.++|++++.+..|..|+..+|+ +..+|.+ +.++.+|..|++.++.... .++..-.++.|+.|
T Consensus 125 ~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~-~~~~~~l~~l~~~~n~l~~--------------l~~~~i~m~~L~~l 188 (565)
T KOG0472|consen 125 ELKELPDSIGRLLDLEDLDATNNQ-ISSLPED-MVNLSKLSKLDLEGNKLKA--------------LPENHIAMKRLKHL 188 (565)
T ss_pred ceeecCchHHHHhhhhhhhccccc-cccCchH-HHHHHHHHHhhccccchhh--------------CCHHHHHHHHHHhc
Confidence 666666666666666666666655 4555555 5555556556555554211 11111113333333
Q ss_pred EEEEechhHHHHHhhcccccCcceEEEEcCccccccccccc--ccccccccceeeecccCCcceeecccccccCCCCCcc
Q 042817 677 SVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTL--SLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPETSR 754 (922)
Q Consensus 677 ~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l--~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~ 754 (922)
+...+ .+..+ .+..+.+|..|++..|.+..++ +. ++
T Consensus 189 d~~~N-------------------------------~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef----------~g 226 (565)
T KOG0472|consen 189 DCNSN-------------------------------LLETLPPELGGLESLELLYLRRNKIRFLP-EF----------PG 226 (565)
T ss_pred ccchh-------------------------------hhhcCChhhcchhhhHHHHhhhcccccCC-CC----------Cc
Confidence 32210 12222 2566667777777776665542 21 23
Q ss_pred CCcccEEEEecCCCCCCCch--hhccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCccceeecCccccccc
Q 042817 755 FHNLHRVGIVNCKSLKDITW--LIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLESLKLARLPNLES 832 (922)
Q Consensus 755 l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~ 832 (922)
++.|+.|++..+ .++.+|. ...+++|..|++++ +.++++|. ...-+.+|++|++++ ..+.+
T Consensus 227 cs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pd--------------e~clLrsL~rLDlSN-N~is~ 289 (565)
T KOG0472|consen 227 CSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPD--------------EICLLRSLERLDLSN-NDISS 289 (565)
T ss_pred cHHHHHHHhccc-HHHhhHHHHhcccccceeeeccc-cccccCch--------------HHHHhhhhhhhcccC-Ccccc
Confidence 666777776655 5555553 33577777777776 45666654 344456677777766 35666
Q ss_pred cccCCcCCCCccEEEecCCC
Q 042817 833 VYWTPLSFSHLKEIRIFKCP 852 (922)
Q Consensus 833 l~~~~~~~p~L~~L~i~~C~ 852 (922)
+|...+++ .|+.|.+.|.|
T Consensus 290 Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 290 LPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred CCcccccc-eeeehhhcCCc
Confidence 66666666 66666666654
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.51 E-value=6.7e-14 Score=163.17 Aligned_cols=244 Identities=21% Similarity=0.227 Sum_probs=143.7
Q ss_pred ccccCCCccccccceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccC
Q 042817 505 GLTEAPGIEKWKGVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISK 584 (922)
Q Consensus 505 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~ 584 (922)
++..+|. .-..+++.|++.+|+++.+|.. .++|++|++++|.++.+|.. .++|+.|++++| .+..+|..
T Consensus 212 ~LtsLP~-~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N-~L~~Lp~l--- 280 (788)
T PRK15387 212 GLTTLPD-CLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSN-PLTHLPAL--- 280 (788)
T ss_pred CCCcCCc-chhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc----ccccceeeccCC-chhhhhhc---
Confidence 4444443 1124678888888888877653 57888888888888777642 467888888888 67777763
Q ss_pred cccCCeeeeccCCccccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchH
Q 042817 585 LISLQYLNLSSTGIRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILI 664 (922)
Q Consensus 585 L~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 664 (922)
..+|+.|++++|+++.+|.. +++|+.|++++|. +..+|.. ..+|+.|++.+|....
T Consensus 281 p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l----p~~L~~L~Ls~N~L~~---------------- 336 (788)
T PRK15387 281 PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL----PSELCKLWAYNNQLTS---------------- 336 (788)
T ss_pred hhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC----cccccccccccCcccc----------------
Confidence 35677888888888888763 4678888888885 5666642 2356677777765211
Q ss_pred HHhhcC-CCCceEEEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeeccc
Q 042817 665 EELLCL-NHLSVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCV 743 (922)
Q Consensus 665 ~~L~~L-~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~ 743 (922)
+..+ .+|+.|+++.+....++. ...+|+.|.++++. +..++ ..+++|+.|++++|.+..++.
T Consensus 337 --LP~lp~~Lq~LdLS~N~Ls~LP~------lp~~L~~L~Ls~N~-----L~~LP-~l~~~L~~LdLs~N~Lt~LP~--- 399 (788)
T PRK15387 337 --LPTLPSGLQELSVSDNQLASLPT------LPSELYKLWAYNNR-----LTSLP-ALPSGLKELIVSGNRLTSLPV--- 399 (788)
T ss_pred --ccccccccceEecCCCccCCCCC------CCcccceehhhccc-----cccCc-ccccccceEEecCCcccCCCC---
Confidence 1111 356677776554433322 12345555555443 11111 112456666666665543321
Q ss_pred ccccCCCCCccCCcccEEEEecCCCCCCCchhhccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCccceee
Q 042817 744 GEIRKTPETSRFHNLHRVGIVNCKSLKDITWLIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLESLK 823 (922)
Q Consensus 744 ~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~ 823 (922)
.+++|+.|+++++ .++.+|.+ +.+|+.|+++++ .++.+|. ....+++|+.|+
T Consensus 400 ----------l~s~L~~LdLS~N-~LssIP~l--~~~L~~L~Ls~N-qLt~LP~--------------sl~~L~~L~~Ld 451 (788)
T PRK15387 400 ----------LPSELKELMVSGN-RLTSLPML--PSGLLSLSVYRN-QLTRLPE--------------SLIHLSSETTVN 451 (788)
T ss_pred ----------cccCCCEEEccCC-cCCCCCcc--hhhhhhhhhccC-cccccCh--------------HHhhccCCCeEE
Confidence 1345666666665 45555532 345666666653 4555543 334566666666
Q ss_pred cCccc
Q 042817 824 LARLP 828 (922)
Q Consensus 824 L~~~~ 828 (922)
|++++
T Consensus 452 Ls~N~ 456 (788)
T PRK15387 452 LEGNP 456 (788)
T ss_pred CCCCC
Confidence 66643
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.50 E-value=2.9e-16 Score=141.70 Aligned_cols=162 Identities=24% Similarity=0.397 Sum_probs=136.8
Q ss_pred cccCCCccccccceEEeeecccccccccc-cCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccC
Q 042817 506 LTEAPGIEKWKGVKRMSLMNNKIRNLSEP-ATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISK 584 (922)
Q Consensus 506 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~ 584 (922)
..+++.+..++++++|.+++|++..+|+. ..+.+|++|++.+|.++.+|.. ++.|++||.|++.-| .+..+|..+|.
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmn-rl~~lprgfgs 100 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMN-RLNILPRGFGS 100 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchh-hhhcCccccCC
Confidence 34566777778899999999999887665 7889999999999999988887 888999999999888 88899999999
Q ss_pred cccCCeeeeccCCcc--ccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccc
Q 042817 585 LISLQYLNLSSTGIR--VLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEI 662 (922)
Q Consensus 585 L~~L~~L~L~~~~i~--~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 662 (922)
++-|+.|||++|++. .+|..+-.++.|+-|++++|.+ .-+|.+ ++++++|+.|.+.++..+ .
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~d-vg~lt~lqil~lrdndll--------------~ 164 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPD-VGKLTNLQILSLRDNDLL--------------S 164 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChh-hhhhcceeEEeeccCchh--------------h
Confidence 999999999999886 6898888889999999999974 778887 899999999999888744 3
Q ss_pred hHHHhhcCCCCceEEEEEechhH
Q 042817 663 LIEELLCLNHLSVLSVCLESDQA 685 (922)
Q Consensus 663 ~~~~L~~L~~L~~L~l~~~~~~~ 685 (922)
.+.+++.|+.|+.|.+..+....
T Consensus 165 lpkeig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 165 LPKEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred CcHHHHHHHHHHHHhcccceeee
Confidence 67888888888888887665443
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.48 E-value=1.5e-13 Score=160.22 Aligned_cols=255 Identities=21% Similarity=0.213 Sum_probs=186.2
Q ss_pred cceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeeeccC
Q 042817 517 GVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSST 596 (922)
Q Consensus 517 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~ 596 (922)
+-..|+++.+.+..+|... .++|+.|.+.+|.++.+|.. +++|++|+|++| .++.+|.. ..+|+.|++++|
T Consensus 202 ~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l----p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL----PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC----CCCCcEEEecCC-ccCcccCc---ccccceeeccCC
Confidence 3456788888888887642 35899999999999988753 689999999999 89999864 468999999999
Q ss_pred CccccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCceE
Q 042817 597 GIRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSVL 676 (922)
Q Consensus 597 ~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L 676 (922)
.++.+|.. ..+|+.|++++|. +..+|.. +++|+.|++++|.... +.. -..+|+.|
T Consensus 273 ~L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~~----p~~L~~LdLS~N~L~~---------------Lp~--lp~~L~~L 327 (788)
T PRK15387 273 PLTHLPAL---PSGLCKLWIFGNQ-LTSLPVL----PPGLQELSVSDNQLAS---------------LPA--LPSELCKL 327 (788)
T ss_pred chhhhhhc---hhhcCEEECcCCc-ccccccc----ccccceeECCCCcccc---------------CCC--Cccccccc
Confidence 99999874 3678899999997 6788862 4789999999986321 000 11346667
Q ss_pred EEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeecccccccCCCCCccCC
Q 042817 677 SVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPETSRFH 756 (922)
Q Consensus 677 ~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l~ 756 (922)
.++.+....++. ...+|+.|+++++. +..++ ...++|+.|.+++|.+..++. .+.
T Consensus 328 ~Ls~N~L~~LP~------lp~~Lq~LdLS~N~-----Ls~LP-~lp~~L~~L~Ls~N~L~~LP~-------------l~~ 382 (788)
T PRK15387 328 WAYNNQLTSLPT------LPSGLQELSVSDNQ-----LASLP-TLPSELYKLWAYNNRLTSLPA-------------LPS 382 (788)
T ss_pred ccccCccccccc------cccccceEecCCCc-----cCCCC-CCCcccceehhhccccccCcc-------------ccc
Confidence 776655444332 23578899998875 22222 123678888888887654421 145
Q ss_pred cccEEEEecCCCCCCCchhhccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCccceeecCccccccccccC
Q 042817 757 NLHRVGIVNCKSLKDITWLIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLESLKLARLPNLESVYWT 836 (922)
Q Consensus 757 ~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~l~~~ 836 (922)
+|+.|+|+++ .++.+|.. .++|+.|+++++ .+..+|. .+.+|+.|++++ .+++.+|..
T Consensus 383 ~L~~LdLs~N-~Lt~LP~l--~s~L~~LdLS~N-~LssIP~-----------------l~~~L~~L~Ls~-NqLt~LP~s 440 (788)
T PRK15387 383 GLKELIVSGN-RLTSLPVL--PSELKELMVSGN-RLTSLPM-----------------LPSGLLSLSVYR-NQLTRLPES 440 (788)
T ss_pred ccceEEecCC-cccCCCCc--ccCCCEEEccCC-cCCCCCc-----------------chhhhhhhhhcc-CcccccChH
Confidence 7999999987 56666643 478999999986 4665533 235788899987 467888877
Q ss_pred CcCCCCccEEEecCCC
Q 042817 837 PLSFSHLKEIRIFKCP 852 (922)
Q Consensus 837 ~~~~p~L~~L~i~~C~ 852 (922)
...+++|+.|++++++
T Consensus 441 l~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 441 LIHLSSETTVNLEGNP 456 (788)
T ss_pred HhhccCCCeEECCCCC
Confidence 7789999999999865
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.42 E-value=3.9e-13 Score=157.97 Aligned_cols=59 Identities=12% Similarity=0.187 Sum_probs=30.8
Q ss_pred cccceeeecccCCcceeecccccccCCCCCccCCcccEEEEecCCCCCCCchhhccCCCcEEEEeccccchhhh
Q 042817 723 EKLRNLFIADSSFEKLQIDCVGEIRKTPETSRFHNLHRVGIVNCKSLKDITWLIFAPNLRILEISYCFEMTEII 796 (922)
Q Consensus 723 ~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~ 796 (922)
++|+.|++++|.+..++. .+ .++|+.|+|++| .++.+|.- ..++|+.|++++| .+..++
T Consensus 346 ~sL~~L~Ls~N~L~~LP~-~l-----------p~~L~~LdLs~N-~Lt~LP~~-l~~sL~~LdLs~N-~L~~LP 404 (754)
T PRK15370 346 PELQVLDVSKNQITVLPE-TL-----------PPTITTLDVSRN-ALTNLPEN-LPAALQIMQASRN-NLVRLP 404 (754)
T ss_pred CcccEEECCCCCCCcCCh-hh-----------cCCcCEEECCCC-cCCCCCHh-HHHHHHHHhhccC-CcccCc
Confidence 566667776665543321 11 246667777666 44454431 1135666666663 344443
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.41 E-value=6.1e-13 Score=156.39 Aligned_cols=244 Identities=20% Similarity=0.239 Sum_probs=165.4
Q ss_pred cceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeeeccC
Q 042817 517 GVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSST 596 (922)
Q Consensus 517 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~ 596 (922)
+...|.+.++.+..+|.. -.++|+.|++++|.++.+|...+ ++|++|++++| .++.+|..+. .+|+.|+|++|
T Consensus 179 ~~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 179 NKTELRLKILGLTTIPAC-IPEQITTLILDNNELKSLPENLQ---GNIKTLYANSN-QLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred CceEEEeCCCCcCcCCcc-cccCCcEEEecCCCCCcCChhhc---cCCCEEECCCC-ccccCChhhh--ccccEEECcCC
Confidence 456778888888777653 23579999999999988887643 58999999998 7888887654 47999999999
Q ss_pred CccccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCceE
Q 042817 597 GIRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSVL 676 (922)
Q Consensus 597 ~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L 676 (922)
.+..+|..+. .+|+.|++++|. +..+|.. +. ++|++|++++|.... .+..+. +
T Consensus 252 ~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~-l~--~sL~~L~Ls~N~Lt~--------------LP~~lp--~----- 304 (754)
T PRK15370 252 RITELPERLP--SALQSLDLFHNK-ISCLPEN-LP--EELRYLSVYDNSIRT--------------LPAHLP--S----- 304 (754)
T ss_pred ccCcCChhHh--CCCCEEECcCCc-cCccccc-cC--CCCcEEECCCCcccc--------------Ccccch--h-----
Confidence 9999998765 589999999886 6778875 32 589999998876211 000000 1
Q ss_pred EEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeecccccccCCCCCccCC
Q 042817 677 SVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPETSRFH 756 (922)
Q Consensus 677 ~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l~ 756 (922)
.|+.|+++++. +..++..-.++|+.|.+++|.+..++.. .++
T Consensus 305 ---------------------sL~~L~Ls~N~-----Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~------------l~~ 346 (754)
T PRK15370 305 ---------------------GITHLNVQSNS-----LTALPETLPPGLKTLEAGENALTSLPAS------------LPP 346 (754)
T ss_pred ---------------------hHHHHHhcCCc-----cccCCccccccceeccccCCccccCChh------------hcC
Confidence 22233333332 1111112236788999988877655321 146
Q ss_pred cccEEEEecCCCCCCCchhhccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCccceeecCccccccccccC
Q 042817 757 NLHRVGIVNCKSLKDITWLIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLESLKLARLPNLESVYWT 836 (922)
Q Consensus 757 ~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~l~~~ 836 (922)
+|+.|+|++| .+..+|. ...++|+.|+|++| .+..+|. . ..++|+.|+++++ ++..+|..
T Consensus 347 sL~~L~Ls~N-~L~~LP~-~lp~~L~~LdLs~N-~Lt~LP~--------------~--l~~sL~~LdLs~N-~L~~LP~s 406 (754)
T PRK15370 347 ELQVLDVSKN-QITVLPE-TLPPTITTLDVSRN-ALTNLPE--------------N--LPAALQIMQASRN-NLVRLPES 406 (754)
T ss_pred cccEEECCCC-CCCcCCh-hhcCCcCEEECCCC-cCCCCCH--------------h--HHHHHHHHhhccC-CcccCchh
Confidence 8999999998 5666654 22479999999986 4666644 1 1246888888874 56666542
Q ss_pred C----cCCCCccEEEecCCC
Q 042817 837 P----LSFSHLKEIRIFKCP 852 (922)
Q Consensus 837 ~----~~~p~L~~L~i~~C~ 852 (922)
. ..+|++..|.+.+.|
T Consensus 407 l~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 407 LPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHHHhhcCCCccEEEeeCCC
Confidence 2 235778888887755
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.38 E-value=1.8e-14 Score=162.20 Aligned_cols=284 Identities=20% Similarity=0.265 Sum_probs=168.5
Q ss_pred cceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeeeccC
Q 042817 517 GVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSST 596 (922)
Q Consensus 517 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~ 596 (922)
++++|....|.+..+....--.+|++++++.|.++.+| +.++.+.+|..|+..+| .+..+|..+....+|++|.+..|
T Consensus 220 ~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~n 297 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHN-RLVALPLRISRITSLVSLSAAYN 297 (1081)
T ss_pred chheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHhhhh
Confidence 45566666665554433344556777777777776766 55677777777777777 66777777777777777777777
Q ss_pred CccccchhhccCCCCCEEeCCCCccccccChhhhCCCCC-CCEEEeecCCcccccccCcccccCccchHHHhhcCCCCce
Q 042817 597 GIRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPL-LRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSV 675 (922)
Q Consensus 597 ~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~ 675 (922)
.++.+|+..+.++.|++|+|..|. +..+|+..+..+.. |+.|+.+.+.... .. ..+. ..+..|+.
T Consensus 298 el~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~-lp------~~~e------~~~~~Lq~ 363 (1081)
T KOG0618|consen 298 ELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLST-LP------SYEE------NNHAALQE 363 (1081)
T ss_pred hhhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccc-cc------cccc------hhhHHHHH
Confidence 777777777777777777777765 56666654443333 4444444333110 00 0000 01112222
Q ss_pred EEEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeecccccccCCCCCccC
Q 042817 676 LSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPETSRF 755 (922)
Q Consensus 676 L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l 755 (922)
|.+..+.... .....+....+|+.|+|+++. ...+....+.+++.|+.|+++||.+..++. ... .+
T Consensus 364 LylanN~Ltd--~c~p~l~~~~hLKVLhLsyNr--L~~fpas~~~kle~LeeL~LSGNkL~~Lp~-tva---------~~ 429 (1081)
T KOG0618|consen 364 LYLANNHLTD--SCFPVLVNFKHLKVLHLSYNR--LNSFPASKLRKLEELEELNLSGNKLTTLPD-TVA---------NL 429 (1081)
T ss_pred HHHhcCcccc--cchhhhccccceeeeeecccc--cccCCHHHHhchHHhHHHhcccchhhhhhH-HHH---------hh
Confidence 3222221110 001112234577788887764 112333347788889999999998888753 222 26
Q ss_pred CcccEEEEecCCCCCCCchhhccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCccceeecCcccccccccc
Q 042817 756 HNLHRVGIVNCKSLKDITWLIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLESLKLARLPNLESVYW 835 (922)
Q Consensus 756 ~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~l~~ 835 (922)
+.|++|...++ .+..+|.+..++.|+.+|++ |+++..+... ....-|+|++|++++.+.+. .
T Consensus 430 ~~L~tL~ahsN-~l~~fPe~~~l~qL~~lDlS-~N~L~~~~l~-------------~~~p~p~LkyLdlSGN~~l~---~ 491 (1081)
T KOG0618|consen 430 GRLHTLRAHSN-QLLSFPELAQLPQLKVLDLS-CNNLSEVTLP-------------EALPSPNLKYLDLSGNTRLV---F 491 (1081)
T ss_pred hhhHHHhhcCC-ceeechhhhhcCcceEEecc-cchhhhhhhh-------------hhCCCcccceeeccCCcccc---c
Confidence 78888877665 67778888899999999997 6778776441 11112899999999876532 2
Q ss_pred CCcCCCCccEEEe
Q 042817 836 TPLSFSHLKEIRI 848 (922)
Q Consensus 836 ~~~~~p~L~~L~i 848 (922)
....|+.|+.+..
T Consensus 492 d~~~l~~l~~l~~ 504 (1081)
T KOG0618|consen 492 DHKTLKVLKSLSQ 504 (1081)
T ss_pred chhhhHHhhhhhh
Confidence 2333455544443
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.37 E-value=1.3e-14 Score=131.26 Aligned_cols=138 Identities=28% Similarity=0.399 Sum_probs=115.6
Q ss_pred ccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeeeccCCccccchhhcc
Q 042817 528 IRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSSTGIRVLPEELKA 607 (922)
Q Consensus 528 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~l~~ 607 (922)
+.+++....+.++..|.+++|.++.+|+. +..+.+|++|++++| .++++|.+++.+++|+.|++.-|++..+|.+++.
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence 34455567788889999999999999998 889999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCEEeCCCCcccc-ccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCceEEEEEec
Q 042817 608 LKDLSYLNMERTSFVR-RIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSVLSVCLES 682 (922)
Q Consensus 608 l~~L~~L~l~~~~~l~-~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~ 682 (922)
++-|+.||+..|+.-. .+|-+ +-.++.|+-|++.++. ....+.++++|++|+.|.+..+.
T Consensus 101 ~p~levldltynnl~e~~lpgn-ff~m~tlralyl~dnd--------------fe~lp~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGDND--------------FEILPPDVGKLTNLQILSLRDND 161 (264)
T ss_pred CchhhhhhccccccccccCCcc-hhHHHHHHHHHhcCCC--------------cccCChhhhhhcceeEEeeccCc
Confidence 9999999999886433 45655 5667888888888775 23467778888888888876443
No 22
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.28 E-value=1.7e-10 Score=144.89 Aligned_cols=292 Identities=14% Similarity=0.183 Sum_probs=179.2
Q ss_pred CCcccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCC-CCCHHHHHHHHHhhc
Q 042817 156 EPRIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSK-DLNLEKVQEDIGKKI 234 (922)
Q Consensus 156 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l 234 (922)
.+.+|-|+...+.+-+. ...+++.|+|++|.||||++....... . .++|+++.. +.+...+...++..+
T Consensus 13 ~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 13 LHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred ccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHHHHHH
Confidence 45678887666555321 356899999999999999999988543 1 589999864 446666666666666
Q ss_pred cCCccc-----------ccCCChhhhHHHHHHHhc--CCcEEEEEccCCCccc--cc-cccccCCCCCCCcEEEEEcCCh
Q 042817 235 DMFSES-----------WKNKSPVEKSCAIFKILS--NKKFVLLLDDMWEPVD--LT-KVGVPIPNSTNASKVVFTTRYK 298 (922)
Q Consensus 235 ~~~~~~-----------~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~--~~-~l~~~~~~~~~gs~IivTtR~~ 298 (922)
...... ....+.......+...+. +.+++|||||+....+ .. .+...+.....+.++|||||..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 83 QQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNL 162 (903)
T ss_pred HHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence 421110 000122223333333343 6899999999965421 12 2222223334567898999984
Q ss_pred hhhcc--c-cccceeecC----CCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHHHhhhccCCCHH
Q 042817 299 EVCGK--M-EAHKKLRVE----CLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITIGRAMSCKNKLE 371 (922)
Q Consensus 299 ~v~~~--~-~~~~~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~ 371 (922)
.-... . -......+. +|+.+|+.++|....+..- -.+....|.+.|+|.|+++..++..+.......
T Consensus 163 ~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~ 236 (903)
T PRK04841 163 PPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI------EAAESSRLCDDVEGWATALQLIALSARQNNSSL 236 (903)
T ss_pred CCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC------CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCch
Confidence 32211 1 112345555 9999999999987654321 245678899999999999999887775432100
Q ss_pred HHHHHHHHHhccCCCCCCccchhhhhh-hhcCCCCCchhhhhhhhcccCCCCCccCHHHHHHHHhhcCCccccccchhhH
Q 042817 372 EWKHAVNVLKKSSSKFPGMDAMYPHLK-FSYDRLPDNKIRSCFLYCSLFPEDYKISKEDLIDCWIGEEFFDEEHNGIGAR 450 (922)
Q Consensus 372 ~w~~~~~~l~~~~~~~~~~~~~~~~l~-~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~ 450 (922)
......+.. . ....+...+. -.++.||+ +.+..++..|+++ .++.+ +... +.. .
T Consensus 237 --~~~~~~~~~----~-~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~---~~~~~-l~~~-----l~~--------~ 291 (903)
T PRK04841 237 --HDSARRLAG----I-NASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR---SMNDA-LIVR-----VTG--------E 291 (903)
T ss_pred --hhhhHhhcC----C-CchhHHHHHHHHHHhcCCH-HHHHHHHHhcccc---cCCHH-HHHH-----HcC--------C
Confidence 010111100 0 0013444333 34789998 8999999999986 33432 2221 111 2
Q ss_pred hhHHHHHHHHHHhccccc-c--CcceEEEcceeehhHHHHH
Q 042817 451 NEGYAIIGDLIRTCLLEE-D--ADDFVELHDVVRDMALWIA 488 (922)
Q Consensus 451 ~~~~~~~~~L~~~sll~~-~--~~~~~~mHdlv~~~a~~~~ 488 (922)
+.+...+++|.+.+++.. . ....|++|++++++.+...
T Consensus 292 ~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 292 ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 234677999999998653 2 3347999999999988654
No 23
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.27 E-value=6.6e-10 Score=124.94 Aligned_cols=293 Identities=16% Similarity=0.101 Sum_probs=169.8
Q ss_pred CCcccchhhHHHHHHHHhcc----CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHH
Q 042817 156 EPRIIGQESIFDDAWRCMIE----EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIG 231 (922)
Q Consensus 156 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 231 (922)
++.++||+.+++++...+.+ .....+.|+|++|+|||++++.++++. ......-..+++++....+...++..|+
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l-~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL-EEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 46799999999999988743 234567899999999999999999987 2222233567787777778889999999
Q ss_pred hhccCCcccccCCChhhhHHHHHHHhc--CCcEEEEEccCCCcc------ccccccccCCCCCCCcE--EEEEcCChhhh
Q 042817 232 KKIDMFSESWKNKSPVEKSCAIFKILS--NKKFVLLLDDMWEPV------DLTKVGVPIPNSTNASK--VVFTTRYKEVC 301 (922)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~------~~~~l~~~~~~~~~gs~--IivTtR~~~v~ 301 (922)
.++..........+..+....+.+.++ +++.+||||+++... .+..+...+. ...+++ ||.++....+.
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~-~~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHE-EYPGARIGVIGISSDLTFL 186 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhh-ccCCCeEEEEEEECCcchh
Confidence 988652111123345666677777775 456899999998642 1222222111 122333 56666654432
Q ss_pred cccc-------ccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHH----hCCchhHHHHHHhhh--c--c
Q 042817 302 GKME-------AHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKE----CGGLPLAIITIGRAM--S--C 366 (922)
Q Consensus 302 ~~~~-------~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~----c~glPLai~~~g~~L--~--~ 366 (922)
.... ....+.+++++.++..+++..++...- ....-..+..+.|++. .|..+.|+.++-.+. + .
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~-~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGF-YPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhc-ccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 2211 124678999999999999988763210 0001112333444444 455777777654321 1 1
Q ss_pred C---CCHHHHHHHHHHHhccCCCCCCccchhhhhhhhcCCCCCchhhhhhhhcc-cCCC-CCccCHHHHHHH--HhhcCC
Q 042817 367 K---NKLEEWKHAVNVLKKSSSKFPGMDAMYPHLKFSYDRLPDNKIRSCFLYCS-LFPE-DYKISKEDLIDC--WIGEEF 439 (922)
Q Consensus 367 ~---~~~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s-~fp~-~~~i~~~~li~~--W~a~g~ 439 (922)
+ -+.+..+.+.+.... ....-.+..||. +.|..+..++ .... ...+...++... .+++.+
T Consensus 266 ~~~~I~~~~v~~a~~~~~~------------~~~~~~~~~L~~-~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~ 332 (394)
T PRK00411 266 GSRKVTEEDVRKAYEKSEI------------VHLSEVLRTLPL-HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEEL 332 (394)
T ss_pred CCCCcCHHHHHHHHHHHHH------------HHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHc
Confidence 1 244555555544311 223446788997 4444333333 2221 123444444432 222111
Q ss_pred ccccccchhhHhhHHHHHHHHHHhccccc
Q 042817 440 FDEEHNGIGARNEGYAIIGDLIRTCLLEE 468 (922)
Q Consensus 440 i~~~~~~~~~~~~~~~~~~~L~~~sll~~ 468 (922)
-. ..-......++++.|...++++.
T Consensus 333 ~~----~~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 333 GY----EPRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred CC----CcCcHHHHHHHHHHHHhcCCeEE
Confidence 00 01123455678999999999875
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.24 E-value=3e-13 Score=138.50 Aligned_cols=289 Identities=20% Similarity=0.234 Sum_probs=169.6
Q ss_pred EcCCccccCCCccccccceEEeeecccccccccc--cCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCccc
Q 042817 501 HAGVGLTEAPGIEKWKGVKRMSLMNNKIRNLSEP--ATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREF 578 (922)
Q Consensus 501 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~l 578 (922)
..+.++.++|. .-......+.+..|.|+.+|+. +.+++||.|+|++|.++.+.++.|.+++.|-.|-+.+++.|+.+
T Consensus 53 Cr~~GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l 131 (498)
T KOG4237|consen 53 CRGKGLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDL 131 (498)
T ss_pred ccCCCcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhh
Confidence 34455666553 1224567777888888887765 67788888888888888888888888888777777775488888
Q ss_pred Ccc-ccCcccCCeeeeccCCccccc-hhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcc-----cccc
Q 042817 579 PPG-ISKLISLQYLNLSSTGIRVLP-EELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGAL-----ERAE 651 (922)
Q Consensus 579 p~~-i~~L~~L~~L~L~~~~i~~lp-~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~-----~~~~ 651 (922)
|.. |++|..|+-|.+.-|++..++ ..+..|++|..|.+.+|. +..++.+.+..+.+++++.+..+... .|..
T Consensus 132 ~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla 210 (498)
T KOG4237|consen 132 PKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLA 210 (498)
T ss_pred hhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhh
Confidence 754 777888888888877777554 457778888888888875 57777766777888888777655421 1100
Q ss_pred cCcccccCccchHHHhhcCCCCceEEEEEechhH--HHHHhhcccccCcce-EEEEcCccccccccccccccccccccee
Q 042817 652 HGSVLFNGGEILIEELLCLNHLSVLSVCLESDQA--LRKFLSSYRLKSSTQ-TLRLRKLKKESESLRTLSLTDMEKLRNL 728 (922)
Q Consensus 652 ~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~--~~~l~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~l~~~~~L~~L 728 (922)
.. ......+.+...-.....+....... -..+... ...+. .+.-.+.. ........+..+++|++|
T Consensus 211 ~~------~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~---~esl~s~~~~~d~~--d~~cP~~cf~~L~~L~~l 279 (498)
T KOG4237|consen 211 DD------LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS---LESLPSRLSSEDFP--DSICPAKCFKKLPNLRKL 279 (498)
T ss_pred hH------HhhchhhcccceecchHHHHHHHhcccchhhhhhh---HHhHHHhhccccCc--CCcChHHHHhhcccceEe
Confidence 00 00000000100000000000000000 0000000 00000 01111111 011111227788999999
Q ss_pred eecccCCcceeecccccccCCCCCccCCcccEEEEecCCCCCCCc--hhhccCCCcEEEEeccccchhhhcccccccccc
Q 042817 729 FIADSSFEKLQIDCVGEIRKTPETSRFHNLHRVGIVNCKSLKDIT--WLIFAPNLRILEISYCFEMTEIISQAKVDEFGA 806 (922)
Q Consensus 729 ~i~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~ 806 (922)
++++|.+..+...|+.. ...|+.|.|..+ ++..+. .+..+..|+.|+|++ +.++.+..
T Consensus 280 nlsnN~i~~i~~~aFe~---------~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~--------- 339 (498)
T KOG4237|consen 280 NLSNNKITRIEDGAFEG---------AAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYD-NQITTVAP--------- 339 (498)
T ss_pred ccCCCccchhhhhhhcc---------hhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecC-CeeEEEec---------
Confidence 99999988877777764 677888888776 555553 366788888888887 45665533
Q ss_pred cCCCCCCccCCccceeecCc
Q 042817 807 TAGNHHQIPFAKLESLKLAR 826 (922)
Q Consensus 807 ~~~~~~~~~fp~L~~L~L~~ 826 (922)
..+....+|.+|.+-.
T Consensus 340 ----~aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 340 ----GAFQTLFSLSTLNLLS 355 (498)
T ss_pred ----ccccccceeeeeehcc
Confidence 2344455666666643
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.19 E-value=8.1e-12 Score=136.56 Aligned_cols=12 Identities=8% Similarity=0.224 Sum_probs=7.2
Q ss_pred CCcccEEEEecC
Q 042817 755 FHNLHRVGIVNC 766 (922)
Q Consensus 755 l~~L~~L~L~~c 766 (922)
+++|+.|++++|
T Consensus 220 ~~~L~~L~ls~n 231 (319)
T cd00116 220 LKSLEVLNLGDN 231 (319)
T ss_pred cCCCCEEecCCC
Confidence 455666666665
No 26
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.15 E-value=1.4e-08 Score=113.01 Aligned_cols=296 Identities=13% Similarity=0.125 Sum_probs=168.1
Q ss_pred CCcccchhhHHHHHHHHhcc----CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCC---ceEEEEEeCCCCCHHHHHH
Q 042817 156 EPRIIGQESIFDDAWRCMIE----EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDF---DIVIWVVVSKDLNLEKVQE 228 (922)
Q Consensus 156 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F---~~~~wv~~s~~~~~~~~~~ 228 (922)
++.++||+.++++|...+.. .....+.|+|++|+|||++++++++......... -..+|+++....+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 35789999999999999864 3345789999999999999999998762111111 2467888887778888999
Q ss_pred HHHhhcc---CCcccccCCChhhhHHHHHHHhc--CCcEEEEEccCCCcc-c----cccccccC-CCCC--CCcEEEEEc
Q 042817 229 DIGKKID---MFSESWKNKSPVEKSCAIFKILS--NKKFVLLLDDMWEPV-D----LTKVGVPI-PNST--NASKVVFTT 295 (922)
Q Consensus 229 ~i~~~l~---~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~-~----~~~l~~~~-~~~~--~gs~IivTt 295 (922)
.|+.++. .... ....+..+....+.+.+. +++++||||+++... . +..+.... .... ....+|.+|
T Consensus 94 ~i~~~l~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~ 172 (365)
T TIGR02928 94 ELANQLRGSGEEVP-TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGIS 172 (365)
T ss_pred HHHHHHhhcCCCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEE
Confidence 9999883 2111 112234455566666663 568899999998752 1 12221110 1111 223455555
Q ss_pred CChhhhcccc-------ccceeecCCCCHHHHHHHHHHhhCCC--CCCCCCChhHHHHHHHHHhCCchhHH-HHHHhhh-
Q 042817 296 RYKEVCGKME-------AHKKLRVECLTADDAWMLFKVKVGED--TIDSHPEIPKHAQLVAKECGGLPLAI-ITIGRAM- 364 (922)
Q Consensus 296 R~~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~~~~~--~~~~~~~~~~~~~~i~~~c~glPLai-~~~g~~L- 364 (922)
........+. ....+.+++.+.++..+++..++... .....++..+...+++....|.|-.+ ..+-.+.
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4443211111 12468899999999999998876311 11122233344555667777888443 3322111
Q ss_pred -c--c---CCCHHHHHHHHHHHhccCCCCCCccchhhhhhhhcCCCCCchhhhhhhhcccC--CCCCccCHHHHHHHHh-
Q 042817 365 -S--C---KNKLEEWKHAVNVLKKSSSKFPGMDAMYPHLKFSYDRLPDNKIRSCFLYCSLF--PEDYKISKEDLIDCWI- 435 (922)
Q Consensus 365 -~--~---~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s~f--p~~~~i~~~~li~~W~- 435 (922)
+ . .-+.+..+.+.+.+.. ....-++..||. +.|..+..++.. .++..+...++...+-
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~~~------------~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKIEK------------DRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHH------------HHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 1 1 1233444444433311 223345678887 555444433311 1334455555555321
Q ss_pred -hcCCccccccchhhHhhHHHHHHHHHHhcccccc
Q 042817 436 -GEEFFDEEHNGIGARNEGYAIIGDLIRTCLLEED 469 (922)
Q Consensus 436 -a~g~i~~~~~~~~~~~~~~~~~~~L~~~sll~~~ 469 (922)
++. +. -..-.......++..|...++++..
T Consensus 320 ~~~~-~~---~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 320 VCED-IG---VDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHh-cC---CCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 111 11 0112345677788999999998764
No 27
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.14 E-value=5.2e-09 Score=111.05 Aligned_cols=181 Identities=12% Similarity=0.180 Sum_probs=113.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHH
Q 042817 176 EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFK 255 (922)
Q Consensus 176 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 255 (922)
.+..++.|+|++|+||||+++.+++.. .. ..+ .++|+ +....+..+++..|+..++.+.. ..+.......+.+
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l-~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~---~~~~~~~~~~l~~ 113 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRL-DQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE---GRDKAALLRELED 113 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhc-CC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHH
Confidence 344689999999999999999999987 21 221 22333 33345778899999998876532 2222233333333
Q ss_pred H-----hcCCcEEEEEccCCCcc--ccccccccC---CCCCCCcEEEEEcCChhhhccc----------cccceeecCCC
Q 042817 256 I-----LSNKKFVLLLDDMWEPV--DLTKVGVPI---PNSTNASKVVFTTRYKEVCGKM----------EAHKKLRVECL 315 (922)
Q Consensus 256 ~-----l~~kr~LlVlDdv~~~~--~~~~l~~~~---~~~~~gs~IivTtR~~~v~~~~----------~~~~~~~l~~L 315 (922)
. ..+++.++|+||++... .++.+.... .+......|++|.... ....+ .....+.++++
T Consensus 114 ~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l 192 (269)
T TIGR03015 114 FLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPL 192 (269)
T ss_pred HHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCC
Confidence 2 25788999999998753 334332111 1122233455555432 21111 11346789999
Q ss_pred CHHHHHHHHHHhhCCCCCCCC-CChhHHHHHHHHHhCCchhHHHHHHhhh
Q 042817 316 TADDAWMLFKVKVGEDTIDSH-PEIPKHAQLVAKECGGLPLAIITIGRAM 364 (922)
Q Consensus 316 ~~~ea~~Lf~~~~~~~~~~~~-~~~~~~~~~i~~~c~glPLai~~~g~~L 364 (922)
+.+|..+++...+........ .-..+..+.|++.++|.|..|..++..+
T Consensus 193 ~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 193 DREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999999877643221111 2235788999999999999999888765
No 28
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.13 E-value=1.9e-10 Score=119.49 Aligned_cols=194 Identities=18% Similarity=0.224 Sum_probs=102.7
Q ss_pred ccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHH--------
Q 042817 159 IIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDI-------- 230 (922)
Q Consensus 159 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i-------- 230 (922)
|+||+.++++|.+++..+..+.+.|+|+.|+|||+|++.+.+.. ...-..++|+.......... ...+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~---~~~~~~~~y~~~~~~~~~~~-~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL---KEKGYKVVYIDFLEESNESS-LRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC---T--EECCCHHCCTTBSHHHH-HHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh---hhcCCcEEEEecccchhhhH-HHHHHHHHHHHH
Confidence 79999999999999987767899999999999999999999986 22111344544444432222 2222
Q ss_pred --HhhccC--Cccc------ccCCChhhhHHHHHHHhc--CCcEEEEEccCCCcc-ccc---c----c---cccCCCCCC
Q 042817 231 --GKKIDM--FSES------WKNKSPVEKSCAIFKILS--NKKFVLLLDDMWEPV-DLT---K----V---GVPIPNSTN 287 (922)
Q Consensus 231 --~~~l~~--~~~~------~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~-~~~---~----l---~~~~~~~~~ 287 (922)
.+.+.. +... ............+.+.+. +++.+||+||+.... ... . + ........+
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 156 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQN 156 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TT
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCC
Confidence 111211 0000 001122233344444443 356999999997655 111 1 1 111222233
Q ss_pred CcEEEEEcCChhhhcc--------ccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHH
Q 042817 288 ASKVVFTTRYKEVCGK--------MEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIIT 359 (922)
Q Consensus 288 gs~IivTtR~~~v~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 359 (922)
.+ +|+++........ .+....+.+++|+.+++++++...+... ... +.-.+..++|...+||+|..|..
T Consensus 157 ~~-~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VS-IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EE-EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred ce-EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 34 4455444433221 2333459999999999999999865433 121 22356679999999999998764
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.11 E-value=5.4e-11 Score=130.06 Aligned_cols=89 Identities=16% Similarity=0.118 Sum_probs=48.9
Q ss_pred CcceEEEEcCccccccccccc--ccccccccceeeecccCCcceeecccccccCCCCCccCCcccEEEEecCCCCCCC--
Q 042817 697 SSTQTLRLRKLKKESESLRTL--SLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPETSRFHNLHRVGIVNCKSLKDI-- 772 (922)
Q Consensus 697 ~~L~~L~l~~~~~~~~~~~~l--~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-- 772 (922)
.+|+.|+++++.........+ .+..+++|+.|++++|......+..+... .. ...+.|++|++++| .+++.
T Consensus 193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~---~~-~~~~~L~~L~l~~n-~i~~~~~ 267 (319)
T cd00116 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASA---LL-SPNISLLTLSLSCN-DITDDGA 267 (319)
T ss_pred CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHH---Hh-ccCCCceEEEccCC-CCCcHHH
Confidence 455666665554211111111 25567888889888887654222221110 00 01468999999888 44321
Q ss_pred ----chhhccCCCcEEEEeccc
Q 042817 773 ----TWLIFAPNLRILEISYCF 790 (922)
Q Consensus 773 ----~~l~~l~~L~~L~L~~c~ 790 (922)
..+..+++|++|+++++.
T Consensus 268 ~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 268 KDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHHHHHhcCCCccEEECCCCC
Confidence 124456788899888754
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.11 E-value=2.8e-12 Score=131.49 Aligned_cols=271 Identities=19% Similarity=0.229 Sum_probs=166.3
Q ss_pred CCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcc-cCccccCcccCCeeeecc-CCccccchh-hccCCCCCEE
Q 042817 538 PHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLRE-FPPGISKLISLQYLNLSS-TGIRVLPEE-LKALKDLSYL 614 (922)
Q Consensus 538 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~-lp~~i~~L~~L~~L~L~~-~~i~~lp~~-l~~l~~L~~L 614 (922)
+.-..+.|..|.++.+|++.|+.+++||.|||++| .|+. -|..|..|..|-.|-+.+ |+|+.+|+. |+.|..|+.|
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 35678899999999999999999999999999999 6655 688899999988887777 899999974 8999999999
Q ss_pred eCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCceEEEEEec------hhHHHH
Q 042817 615 NMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSVLSVCLES------DQALRK 688 (922)
Q Consensus 615 ~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~------~~~~~~ 688 (922)
.+.-|+ +..++.+.+..|++|..|.++++..-. ..-..+..+..++.+.+..+. ...+..
T Consensus 146 llNan~-i~Cir~~al~dL~~l~lLslyDn~~q~-------------i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~ 211 (498)
T KOG4237|consen 146 LLNANH-INCIRQDALRDLPSLSLLSLYDNKIQS-------------ICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD 211 (498)
T ss_pred hcChhh-hcchhHHHHHHhhhcchhcccchhhhh-------------hccccccchhccchHhhhcCccccccccchhhh
Confidence 999887 688888889999999999999876211 011123344444444433222 110000
Q ss_pred Hh----hcccccCcceEEEEcCcccccccccccc-cccccccceeeecccCCcc-eeecccccccCCCCCccCCcccEEE
Q 042817 689 FL----SSYRLKSSTQTLRLRKLKKESESLRTLS-LTDMEKLRNLFIADSSFEK-LQIDCVGEIRKTPETSRFHNLHRVG 762 (922)
Q Consensus 689 l~----~~~~~~~~L~~L~l~~~~~~~~~~~~l~-l~~~~~L~~L~i~~~~~~~-l~~~~~~~~~~~~~~~~l~~L~~L~ 762 (922)
.. .............+.+... .....-. .....++.+-..+.|.... .+...+ ..+++|++|+
T Consensus 212 ~~a~~~ietsgarc~~p~rl~~~Ri--~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf---------~~L~~L~~ln 280 (498)
T KOG4237|consen 212 DLAMNPIETSGARCVSPYRLYYKRI--NQEDARKFLCSLESLPSRLSSEDFPDSICPAKCF---------KKLPNLRKLN 280 (498)
T ss_pred HHhhchhhcccceecchHHHHHHHh--cccchhhhhhhHHhHHHhhccccCcCCcChHHHH---------hhcccceEec
Confidence 00 0000000110000100000 0000000 0011111111111121111 111222 2488999999
Q ss_pred EecCCCCCCC--chhhccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCccceeecCcccccccccc-CCcC
Q 042817 763 IVNCKSLKDI--TWLIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLESLKLARLPNLESVYW-TPLS 839 (922)
Q Consensus 763 L~~c~~l~~l--~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~l~~-~~~~ 839 (922)
|+++ .++.+ .++..+..|+.|.|.+ +.++.+.. ..+..+..|+.|+|.+. +++.+.+ ....
T Consensus 281 lsnN-~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~-------------~~f~~ls~L~tL~L~~N-~it~~~~~aF~~ 344 (498)
T KOG4237|consen 281 LSNN-KITRIEDGAFEGAAELQELYLTR-NKLEFVSS-------------GMFQGLSGLKTLSLYDN-QITTVAPGAFQT 344 (498)
T ss_pred cCCC-ccchhhhhhhcchhhhhhhhcCc-chHHHHHH-------------HhhhccccceeeeecCC-eeEEEecccccc
Confidence 9987 67766 3688889999999987 46776644 35667888999999884 5555443 3333
Q ss_pred CCCccEEEecC
Q 042817 840 FSHLKEIRIFK 850 (922)
Q Consensus 840 ~p~L~~L~i~~ 850 (922)
+.+|.+|.+..
T Consensus 345 ~~~l~~l~l~~ 355 (498)
T KOG4237|consen 345 LFSLSTLNLLS 355 (498)
T ss_pred cceeeeeehcc
Confidence 56677777654
No 31
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.00 E-value=5.8e-09 Score=113.41 Aligned_cols=273 Identities=14% Similarity=0.110 Sum_probs=150.9
Q ss_pred CcccchhhHHHHHHHHhcc-----CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHH
Q 042817 157 PRIIGQESIFDDAWRCMIE-----EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIG 231 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 231 (922)
..|+|++..++.+..++.. ...+.+.|+|++|+||||+|+.+++.. ...+ .++..... .....+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l---~~~~---~~~~~~~~-~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM---GVNI---RITSGPAL-EKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh---CCCe---EEEecccc-cChHHHHHHH
Confidence 4689999999998877752 335678899999999999999999987 2222 12222111 1112223333
Q ss_pred hhccCCc----ccccCCChhhhHHHHHHHhcCCcEEEEEccCCCccccccccccCCCCCCCcEEEEEcCChhhhcccc--
Q 042817 232 KKIDMFS----ESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPVDLTKVGVPIPNSTNASKVVFTTRYKEVCGKME-- 305 (922)
Q Consensus 232 ~~l~~~~----~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTtR~~~v~~~~~-- 305 (922)
..+.... +..+... ....+.+...+.+.+..+|+|+..+...+.. .++ +.+-|..||+...+.....
T Consensus 98 ~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~---~l~---~~~li~at~~~~~l~~~L~sR 170 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIRL---DLP---PFTLIGATTRAGLLTSPLRDR 170 (328)
T ss_pred HhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCccccceee---cCC---CceEEeecCCcccCCHHHHHh
Confidence 3332111 0000111 1123345556666777777777655433221 111 2345666777554432211
Q ss_pred ccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHHHhhhccCCCHHHHHHHHHHHhccCC
Q 042817 306 AHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITIGRAMSCKNKLEEWKHAVNVLKKSSS 385 (922)
Q Consensus 306 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~~w~~~~~~l~~~~~ 385 (922)
....+.+++++.++..+++...+...... --.+....|++.|+|.|-.+..+...+. .|.... ....-
T Consensus 171 f~~~~~l~~~~~~e~~~il~~~~~~~~~~---~~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~---~~~~I 238 (328)
T PRK00080 171 FGIVQRLEFYTVEELEKIVKRSARILGVE---IDEEGALEIARRSRGTPRIANRLLRRVR------DFAQVK---GDGVI 238 (328)
T ss_pred cCeeeecCCCCHHHHHHHHHHHHHHcCCC---cCHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHc---CCCCC
Confidence 13468999999999999999887654322 2246789999999999965554443321 121110 00000
Q ss_pred CCCCccchhhhhhhhcCCCCCchhhhhhh-hcccCCCCCccCHHHHHHHHhhcCCccccccchhhHhhHHHHHH-HHHHh
Q 042817 386 KFPGMDAMYPHLKFSYDRLPDNKIRSCFL-YCSLFPEDYKISKEDLIDCWIGEEFFDEEHNGIGARNEGYAIIG-DLIRT 463 (922)
Q Consensus 386 ~~~~~~~~~~~l~~sy~~L~~~~~k~cfl-~~s~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~~~~~~~~~-~L~~~ 463 (922)
...........+...|..|++ ..+..+. ....|+.+ .+..+.+.... . ...+.+++.++ .|++.
T Consensus 239 ~~~~v~~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g------~~~~~~~~~~e~~Li~~ 304 (328)
T PRK00080 239 TKEIADKALDMLGVDELGLDE-MDRKYLRTIIEKFGGG-PVGLDTLAAAL------G------EERDTIEDVYEPYLIQQ 304 (328)
T ss_pred CHHHHHHHHHHhCCCcCCCCH-HHHHHHHHHHHHcCCC-ceeHHHHHHHH------C------CCcchHHHHhhHHHHHc
Confidence 000111344455667788887 4455553 56667655 45555543322 1 11233444455 78888
Q ss_pred cccccc
Q 042817 464 CLLEED 469 (922)
Q Consensus 464 sll~~~ 469 (922)
+|++..
T Consensus 305 ~li~~~ 310 (328)
T PRK00080 305 GFIQRT 310 (328)
T ss_pred CCcccC
Confidence 888754
No 32
>PF05729 NACHT: NACHT domain
Probab=98.99 E-value=2.8e-09 Score=104.02 Aligned_cols=141 Identities=18% Similarity=0.277 Sum_probs=91.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCC----CceEEEEEeCCCCCHH---HHHHHHHhhccCCcccccCCChhhhHH
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKLCQERHD----FDIVIWVVVSKDLNLE---KVQEDIGKKIDMFSESWKNKSPVEKSC 251 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----F~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~ 251 (922)
|++.|+|.+|+||||+++.++.+.. .... +...+|++........ .+...|..+..... .....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~--- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLA-EEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-----APIEE--- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHH-hcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-----hhhHH---
Confidence 5899999999999999999998873 2222 4567777766554432 44444444443211 11111
Q ss_pred HHHHH-hcCCcEEEEEccCCCccc---------cccccc-cCCC-CCCCcEEEEEcCChhh---hccccccceeecCCCC
Q 042817 252 AIFKI-LSNKKFVLLLDDMWEPVD---------LTKVGV-PIPN-STNASKVVFTTRYKEV---CGKMEAHKKLRVECLT 316 (922)
Q Consensus 252 ~l~~~-l~~kr~LlVlDdv~~~~~---------~~~l~~-~~~~-~~~gs~IivTtR~~~v---~~~~~~~~~~~l~~L~ 316 (922)
.+... -+.+++++|+|++++... +..+.. .++. ..++.+||||+|.... .........+.+.+|+
T Consensus 72 ~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 72 LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFS 151 (166)
T ss_pred HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCC
Confidence 22222 257899999999987532 112221 1222 2468999999998766 3333444689999999
Q ss_pred HHHHHHHHHHhh
Q 042817 317 ADDAWMLFKVKV 328 (922)
Q Consensus 317 ~~ea~~Lf~~~~ 328 (922)
+++..+++.+..
T Consensus 152 ~~~~~~~~~~~f 163 (166)
T PF05729_consen 152 EEDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 33
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.96 E-value=6.3e-08 Score=104.72 Aligned_cols=274 Identities=15% Similarity=0.116 Sum_probs=152.9
Q ss_pred CcccchhhHHHHHHHHhcc-----CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHH
Q 042817 157 PRIIGQESIFDDAWRCMIE-----EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIG 231 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 231 (922)
..|||+++.++++..++.. .....+.++|++|+|||+||+.+++.. ...+ ..+..+.......+. ..+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~l~-~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM---GVNL---KITSGPALEKPGDLA-AIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCE---EEeccchhcCchhHH-HHH
Confidence 3689999999999888862 334568899999999999999999987 2222 122222112222222 222
Q ss_pred hhccCCc----ccccCCChhhhHHHHHHHhcCCcEEEEEccCCCccccccccccCCCCCCCcEEEEEcCChhhhccc--c
Q 042817 232 KKIDMFS----ESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPVDLTKVGVPIPNSTNASKVVFTTRYKEVCGKM--E 305 (922)
Q Consensus 232 ~~l~~~~----~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTtR~~~v~~~~--~ 305 (922)
..++... +..+... ......+...+.+.+..+|+|+..+...+.. .++ +.+-|..||+...+.... .
T Consensus 77 ~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~~---~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DLP---PFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred HhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee---cCC---CeEEEEecCCccccCHHHHhh
Confidence 2232111 0001111 1233456667777777888887766554432 121 245566677765443321 1
Q ss_pred ccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHHHhhhccCCCHHHHHHHHHHHhccCC
Q 042817 306 AHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITIGRAMSCKNKLEEWKHAVNVLKKSSS 385 (922)
Q Consensus 306 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~~w~~~~~~l~~~~~ 385 (922)
....+.+++++.++..+++...+..... .-..+....|++.|+|.|-.+..++..+ |..+. .......
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~---~~~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~-~~~~~~i 217 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNV---EIEPEAALEIARRSRGTPRIANRLLRRV--------RDFAQ-VRGQKII 217 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHH-HcCCCCc
Confidence 1346799999999999999988754331 1224667889999999997665444332 21110 0000000
Q ss_pred CCCCccchhhhhhhhcCCCCCchhhhhhh-hcccCCCCCccCHHHHHHHHhhcCCccccccchhhHhhHHHHHH-HHHHh
Q 042817 386 KFPGMDAMYPHLKFSYDRLPDNKIRSCFL-YCSLFPEDYKISKEDLIDCWIGEEFFDEEHNGIGARNEGYAIIG-DLIRT 463 (922)
Q Consensus 386 ~~~~~~~~~~~l~~sy~~L~~~~~k~cfl-~~s~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~~~~~~~~~-~L~~~ 463 (922)
...........+...|..++. +.+..+. ..+.++.+ .++.+.+.... | .....+...++ .|++.
T Consensus 218 t~~~v~~~l~~l~~~~~~l~~-~~~~~L~al~~~~~~~-~~~~~~ia~~l---g---------~~~~~~~~~~e~~Li~~ 283 (305)
T TIGR00635 218 NRDIALKALEMLMIDELGLDE-IDRKLLSVLIEQFQGG-PVGLKTLAAAL---G---------EDADTIEDVYEPYLLQI 283 (305)
T ss_pred CHHHHHHHHHHhCCCCCCCCH-HHHHHHHHHHHHhCCC-cccHHHHHHHh---C---------CCcchHHHhhhHHHHHc
Confidence 000001223335567788887 5555444 44556533 44444444322 1 12234555577 59999
Q ss_pred ccccccC
Q 042817 464 CLLEEDA 470 (922)
Q Consensus 464 sll~~~~ 470 (922)
++++...
T Consensus 284 ~li~~~~ 290 (305)
T TIGR00635 284 GFLQRTP 290 (305)
T ss_pred CCcccCC
Confidence 9997653
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.96 E-value=7.6e-10 Score=106.11 Aligned_cols=106 Identities=30% Similarity=0.441 Sum_probs=21.8
Q ss_pred cCCCCceEEEeccCcccccchhhhc-cCCCceEEEccCCCCCcccCccccCcccCCeeeeccCCccccchhh-ccCCCCC
Q 042817 535 ATCPHLLTLFLQNNRLSNITANFFQ-FMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSSTGIRVLPEEL-KALKDLS 612 (922)
Q Consensus 535 ~~~~~L~~L~l~~~~l~~~~~~~~~-~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~l-~~l~~L~ 612 (922)
.++.+++.|+|.+|.+..+.. ++ .+.+|++|+|++| .++.++ .+..+++|++|++++|.|++++..+ ..+++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp --------------------S----TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred ccccccccccccccccccccc--hhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 333444444444444433321 22 2444555555554 444443 2444455555555555555444333 2344555
Q ss_pred EEeCCCCccccccCh-hhhCCCCCCCEEEeecCC
Q 042817 613 YLNMERTSFVRRIPR-QLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 613 ~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~ 645 (922)
+|++++|. +..+.. ..++.+++|++|++.+|.
T Consensus 92 ~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 92 ELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G
T ss_pred EEECcCCc-CCChHHhHHHHcCCCcceeeccCCc
Confidence 55555443 222211 113444555555555444
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.95 E-value=6.2e-10 Score=106.68 Aligned_cols=132 Identities=29% Similarity=0.379 Sum_probs=57.1
Q ss_pred CCccccccceEEeeeccccccccccc-CCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccc-cCccc
Q 042817 510 PGIEKWKGVKRMSLMNNKIRNLSEPA-TCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGI-SKLIS 587 (922)
Q Consensus 510 ~~~~~~~~l~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i-~~L~~ 587 (922)
+......+++.|++.+|.|+.+.... .+.+|+.|++++|.++.+.. +..+++|++|++++| .++.+++.+ ..+++
T Consensus 13 ~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~ 89 (175)
T PF14580_consen 13 AQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNN-RISSISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS----S-CHHHHHH-TT
T ss_pred cccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCC-CCCccccchHHhCCc
Confidence 34444557899999999999887775 58899999999999988764 788999999999999 898887665 46899
Q ss_pred CCeeeeccCCccccc--hhhccCCCCCEEeCCCCccccccC---hhhhCCCCCCCEEEeecCC
Q 042817 588 LQYLNLSSTGIRVLP--EELKALKDLSYLNMERTSFVRRIP---RQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 588 L~~L~L~~~~i~~lp--~~l~~l~~L~~L~l~~~~~l~~lp---~~~i~~l~~L~~L~l~~~~ 645 (922)
|+.|++++|+|..+- ..+..+++|++|++.+|+.. ..+ ..++..+|+|+.|+-....
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTEETT
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCEEcc
Confidence 999999999988654 35778999999999999853 333 2357788999999876654
No 36
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.86 E-value=7e-08 Score=109.79 Aligned_cols=290 Identities=16% Similarity=0.204 Sum_probs=183.7
Q ss_pred CcccchhhHHHHHHHHhcc-CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCC-CCHHHHHHHHHhhc
Q 042817 157 PRIIGQESIFDDAWRCMIE-EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKD-LNLEKVQEDIGKKI 234 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l 234 (922)
...|-|.. +++.|.. .+.+.+.|..+.|.|||||+-+..... ..-..+.|.++... .+...+...++..+
T Consensus 19 ~~~v~R~r----L~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yLi~al 90 (894)
T COG2909 19 DNYVVRPR----LLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYLIAAL 90 (894)
T ss_pred ccccccHH----HHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHHHHHH
Confidence 34566654 4555554 378999999999999999999988733 33456899998765 45677777777777
Q ss_pred cCCccc-----------ccCCChhhhHHHHHHHhc--CCcEEEEEccCCCccc--c-ccccccCCCCCCCcEEEEEcCCh
Q 042817 235 DMFSES-----------WKNKSPVEKSCAIFKILS--NKKFVLLLDDMWEPVD--L-TKVGVPIPNSTNASKVVFTTRYK 298 (922)
Q Consensus 235 ~~~~~~-----------~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~--~-~~l~~~~~~~~~gs~IivTtR~~ 298 (922)
+...+. ....+...+.+.+...+. .++..+||||..-..+ + ..+...+.....+-..|||||+.
T Consensus 91 ~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~r 170 (894)
T COG2909 91 QQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSR 170 (894)
T ss_pred HHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccC
Confidence 532211 112233344445555444 3689999999854321 1 22222233344578899999987
Q ss_pred hhhccc---cccceeecC----CCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHHHhhhccCCCHH
Q 042817 299 EVCGKM---EAHKKLRVE----CLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITIGRAMSCKNKLE 371 (922)
Q Consensus 299 ~v~~~~---~~~~~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~ 371 (922)
.-.... -.+..++++ .++.+|+.++|....+.. -.....+.+.+..+|-+-|+..++=.++.+.+.+
T Consensus 171 P~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~------Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~ 244 (894)
T COG2909 171 PQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLP------LDAADLKALYDRTEGWAAALQLIALALRNNTSAE 244 (894)
T ss_pred CCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCC------CChHHHHHHHhhcccHHHHHHHHHHHccCCCcHH
Confidence 643211 112233332 478999999998765332 2245678899999999999999987777444332
Q ss_pred HHHHHHHHHhccCCCCCCcc-chh-hhhhhhcCCCCCchhhhhhhhcccCCCCCccCHHHHHHHHhhcCCccccccchhh
Q 042817 372 EWKHAVNVLKKSSSKFPGMD-AMY-PHLKFSYDRLPDNKIRSCFLYCSLFPEDYKISKEDLIDCWIGEEFFDEEHNGIGA 449 (922)
Q Consensus 372 ~w~~~~~~l~~~~~~~~~~~-~~~-~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~ 449 (922)
.-...+. +.+ -+. ....=-++.||+ ++|..++-||+++.- . ..|+.. .+-
T Consensus 245 q~~~~Ls----------G~~~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~f---~-~eL~~~-------------Ltg 296 (894)
T COG2909 245 QSLRGLS----------GAASHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSRF---N-DELCNA-------------LTG 296 (894)
T ss_pred HHhhhcc----------chHHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHHh---h-HHHHHH-------------Hhc
Confidence 2111111 000 111 112234678999 899999999998531 1 233322 233
Q ss_pred HhhHHHHHHHHHHhcccccc---CcceEEEcceeehhHHHHH
Q 042817 450 RNEGYAIIGDLIRTCLLEED---ADDFVELHDVVRDMALWIA 488 (922)
Q Consensus 450 ~~~~~~~~~~L~~~sll~~~---~~~~~~mHdlv~~~a~~~~ 488 (922)
++.+..++++|.+++++-.. ....|+.|.++.+|-+.-.
T Consensus 297 ~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~ 338 (894)
T COG2909 297 EENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRL 338 (894)
T ss_pred CCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhh
Confidence 45677889999999997643 6788999999999877433
No 37
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.76 E-value=6.2e-10 Score=115.59 Aligned_cols=278 Identities=20% Similarity=0.188 Sum_probs=130.7
Q ss_pred CceEEEeccCccccc--chhhhccCCCceEEEccCCCCCcc--cCccccCcccCCeeeeccC-Cccc--cchhhccCCCC
Q 042817 539 HLLTLFLQNNRLSNI--TANFFQFMPSLKVLNLSNNFSLRE--FPPGISKLISLQYLNLSST-GIRV--LPEELKALKDL 611 (922)
Q Consensus 539 ~L~~L~l~~~~l~~~--~~~~~~~l~~L~~L~L~~~~~l~~--lp~~i~~L~~L~~L~L~~~-~i~~--lp~~l~~l~~L 611 (922)
.|+.|.+.++.-... ...+-..++++..|++.+|..++. +-..-..+++|++|++..| .|+. |-.-...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 466677777632111 123345667777777777754432 1111224566677777664 4442 21223445666
Q ss_pred CEEeCCCCccccccC-hhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCceEEEEEechhHHHHHh
Q 042817 612 SYLNMERTSFVRRIP-RQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSVLSVCLESDQALRKFL 690 (922)
Q Consensus 612 ~~L~l~~~~~l~~lp-~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~l~ 690 (922)
++|+++.|..+..-. .....++.+|+.+...+|... .++.+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~-------------------------------------~le~l~ 261 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL-------------------------------------ELEALL 261 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccc-------------------------------------cHHHHH
Confidence 666666665433200 001234444555544454422 122222
Q ss_pred hcccccCcceEEEEcCcccccccccccc----cccccccceeeecccCCcc-eeecccccccCCCCCccCCcccEEEEec
Q 042817 691 SSYRLKSSTQTLRLRKLKKESESLRTLS----LTDMEKLRNLFIADSSFEK-LQIDCVGEIRKTPETSRFHNLHRVGIVN 765 (922)
Q Consensus 691 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~----l~~~~~L~~L~i~~~~~~~-l~~~~~~~~~~~~~~~~l~~L~~L~L~~ 765 (922)
........+..+++..|. .++... -..+..|+.|..++|.... ..+..++ ...++|+.|.+.+
T Consensus 262 ~~~~~~~~i~~lnl~~c~----~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg--------~~~~~L~~l~l~~ 329 (483)
T KOG4341|consen 262 KAAAYCLEILKLNLQHCN----QLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALG--------QHCHNLQVLELSG 329 (483)
T ss_pred HHhccChHhhccchhhhc----cccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHh--------cCCCceEEEeccc
Confidence 111111222233333332 111111 1234555666555554432 2222222 1346666666666
Q ss_pred CCCCCCCc--hhh-ccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCccceeecCcccccccc-----ccCC
Q 042817 766 CKSLKDIT--WLI-FAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLESLKLARLPNLESV-----YWTP 837 (922)
Q Consensus 766 c~~l~~l~--~l~-~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~l-----~~~~ 837 (922)
|..+++.. .++ +.+.|+.|++.+|..+.+-.. . ......|.|+.|.|++|.....- ....
T Consensus 330 c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL----------~--sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 330 CQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTL----------A--SLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred cchhhhhhhhhhhcCChhhhhhcccccceehhhhH----------h--hhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 66555542 222 356666666666654443200 0 12345666777777666544432 1122
Q ss_pred cCCCCccEEEecCCCCCCC--CCCCCCcccccceEEEccccc
Q 042817 838 LSFSHLKEIRIFKCPRLWK--LPLDSNSAKERKIVIKGEIDW 877 (922)
Q Consensus 838 ~~~p~L~~L~i~~C~~L~~--lp~~~~~~~l~~l~I~g~~~~ 877 (922)
-++..|+.+++.+||.++. +........++.+++.+|+..
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 2355667777777776664 333333445666666666553
No 38
>PRK06893 DNA replication initiation factor; Validated
Probab=98.72 E-value=6.5e-08 Score=99.04 Aligned_cols=152 Identities=14% Similarity=0.181 Sum_probs=93.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKI 256 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 256 (922)
..+.+.|+|++|+|||+||+++++... . ....+.|+++.... .... .+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~-~--~~~~~~y~~~~~~~---~~~~-----------------------~~~~~ 88 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYL-L--NQRTAIYIPLSKSQ---YFSP-----------------------AVLEN 88 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-H--cCCCeEEeeHHHhh---hhhH-----------------------HHHhh
Confidence 345789999999999999999999872 1 22345677653110 0000 11112
Q ss_pred hcCCcEEEEEccCCCc---ccccc-ccccCCCC-CCCcEEEE-EcCC---------hhhhccccccceeecCCCCHHHHH
Q 042817 257 LSNKKFVLLLDDMWEP---VDLTK-VGVPIPNS-TNASKVVF-TTRY---------KEVCGKMEAHKKLRVECLTADDAW 321 (922)
Q Consensus 257 l~~kr~LlVlDdv~~~---~~~~~-l~~~~~~~-~~gs~Iiv-TtR~---------~~v~~~~~~~~~~~l~~L~~~ea~ 321 (922)
++ +.-+|||||+|.. .+|+. +...+... ..|..+|| |++. +++...+.....+++++++.++.+
T Consensus 89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~ 167 (229)
T PRK06893 89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKI 167 (229)
T ss_pred cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHH
Confidence 22 2348999999863 33432 22212111 23555654 4443 344555556678999999999999
Q ss_pred HHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHHH
Q 042817 322 MLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITIG 361 (922)
Q Consensus 322 ~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 361 (922)
+++.+.+....... -++...-|++.+.|..-++..+-
T Consensus 168 ~iL~~~a~~~~l~l---~~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 168 IVLQRNAYQRGIEL---SDEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHHHHHHHcCCCC---CHHHHHHHHHhccCCHHHHHHHH
Confidence 99998886443222 25677788888887776665443
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.5e-09 Score=107.51 Aligned_cols=184 Identities=20% Similarity=0.145 Sum_probs=97.3
Q ss_pred cCCeeeeccCCcc--ccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchH
Q 042817 587 SLQYLNLSSTGIR--VLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILI 664 (922)
Q Consensus 587 ~L~~L~L~~~~i~--~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 664 (922)
.||+|||+.+.|+ .+..-+..+.+|+.|.+.|+..-..+-.. |.+-.+|+.|+++.|+.+.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t---------------- 248 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFT---------------- 248 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccccccc----------------
Confidence 4788888887766 45555666777777777776643333333 5566677777777765221
Q ss_pred HHhhcCCCCceEEEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeecccc
Q 042817 665 EELLCLNHLSVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVG 744 (922)
Q Consensus 665 ~~L~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~ 744 (922)
..++.- ....++.|..|+|+||....+.++...-.--++|..|+++||.-.- ....+.
T Consensus 249 ------------------~n~~~l---l~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl-~~sh~~ 306 (419)
T KOG2120|consen 249 ------------------ENALQL---LLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL-QKSHLS 306 (419)
T ss_pred ------------------hhHHHH---HHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh-hhhHHH
Confidence 001111 1122445666666666543333322222223567777777764211 111100
Q ss_pred cccCCCCCccCCcccEEEEecCCCCCCC--chhhccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCcccee
Q 042817 745 EIRKTPETSRFHNLHRVGIVNCKSLKDI--TWLIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLESL 822 (922)
Q Consensus 745 ~~~~~~~~~~l~~L~~L~L~~c~~l~~l--~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L 822 (922)
. -...+|+|..|+|++|..++.- ..+-+++.|++|.++.|+.+.--.. -.+...|+|.+|
T Consensus 307 t-----L~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~-------------~~l~s~psl~yL 368 (419)
T KOG2120|consen 307 T-----LVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETL-------------LELNSKPSLVYL 368 (419)
T ss_pred H-----HHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHe-------------eeeccCcceEEE
Confidence 0 0013667777777777666551 2245677777777777765421100 234456667777
Q ss_pred ecCcc
Q 042817 823 KLARL 827 (922)
Q Consensus 823 ~L~~~ 827 (922)
++.+|
T Consensus 369 dv~g~ 373 (419)
T KOG2120|consen 369 DVFGC 373 (419)
T ss_pred Eeccc
Confidence 66665
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.62 E-value=4.7e-09 Score=104.02 Aligned_cols=130 Identities=27% Similarity=0.435 Sum_probs=108.3
Q ss_pred ccccccceEEeeecccccccccc-cCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCe
Q 042817 512 IEKWKGVKRMSLMNNKIRNLSEP-ATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQY 590 (922)
Q Consensus 512 ~~~~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 590 (922)
...|+.+..+++++|.|+.+... .-.|.+|.|++++|.+..+.. +..+++|+.|||++| .+.++-..-.+|-|.++
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKT 356 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccc-hhHhhhhhHhhhcCEee
Confidence 34578899999999999988766 557999999999998877655 788999999999999 77776655557888999
Q ss_pred eeeccCCccccchhhccCCCCCEEeCCCCccccccC-hhhhCCCCCCCEEEeecCCc
Q 042817 591 LNLSSTGIRVLPEELKALKDLSYLNMERTSFVRRIP-RQLISNFPLLRVLRMLDCGA 646 (922)
Q Consensus 591 L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp-~~~i~~l~~L~~L~l~~~~~ 646 (922)
|+|++|.|..+ +++++|.+|..||+++|+ +..+. -..|++||.|++|.+.+|..
T Consensus 357 L~La~N~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 357 LKLAQNKIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred eehhhhhHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCc
Confidence 99999999988 589999999999999997 45543 12389999999999998873
No 41
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.62 E-value=1.6e-09 Score=116.69 Aligned_cols=173 Identities=26% Similarity=0.305 Sum_probs=103.5
Q ss_pred cccceEEeeecccccccccc-cCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeee
Q 042817 515 WKGVKRMSLMNNKIRNLSEP-ATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNL 593 (922)
Q Consensus 515 ~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L 593 (922)
+..+..+.+..|.+..++.. ..+..|.+|+++.|.+..+|.. +.. --|++|-+++| .++.+|+.++.+.+|..|+.
T Consensus 97 f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~-lC~-lpLkvli~sNN-kl~~lp~~ig~~~tl~~ld~ 173 (722)
T KOG0532|consen 97 FVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDG-LCD-LPLKVLIVSNN-KLTSLPEEIGLLPTLAHLDV 173 (722)
T ss_pred HHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChh-hhc-CcceeEEEecC-ccccCCcccccchhHHHhhh
Confidence 33455555555655555443 5566666677777766666665 222 24667777766 66777777776677777777
Q ss_pred ccCCccccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCC
Q 042817 594 SSTGIRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHL 673 (922)
Q Consensus 594 ~~~~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L 673 (922)
+.|.+..+|+.++.|.+|+.|.++.|+ +..+|.+ +..|+ |..|+++.|+.. ..+-.+.+|++|
T Consensus 174 s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~Lp-Li~lDfScNkis--------------~iPv~fr~m~~L 236 (722)
T KOG0532|consen 174 SKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCSLP-LIRLDFSCNKIS--------------YLPVDFRKMRHL 236 (722)
T ss_pred hhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhCCc-eeeeecccCcee--------------ecchhhhhhhhh
Confidence 777777777777777777777777765 4566665 44443 666776665522 255566777777
Q ss_pred ceEEEEEechhHHHHHhhcccccCcceEEEEcCc
Q 042817 674 SVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKL 707 (922)
Q Consensus 674 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 707 (922)
++|-+..+...+-+.-........-.+.|++.-|
T Consensus 237 q~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 237 QVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 7777766655443322222222333455555555
No 42
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.57 E-value=3.2e-07 Score=94.48 Aligned_cols=167 Identities=9% Similarity=0.080 Sum_probs=101.3
Q ss_pred hhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccc
Q 042817 162 QESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESW 241 (922)
Q Consensus 162 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~ 241 (922)
.+..++++.+++.....+.+.|+|++|+|||++|+++++... ......++++++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~---~~~~~~~~i~~~~~~~------~~----------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE---ERGKSAIYLPLAELAQ------AD----------- 81 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH---hcCCcEEEEeHHHHHH------hH-----------
Confidence 455677777776555667899999999999999999998872 2233456665443211 00
Q ss_pred cCCChhhhHHHHHHHhcCCcEEEEEccCCCcc---cc-ccccccCCC-CCCCcEEEEEcCChhh---------hcccccc
Q 042817 242 KNKSPVEKSCAIFKILSNKKFVLLLDDMWEPV---DL-TKVGVPIPN-STNASKVVFTTRYKEV---------CGKMEAH 307 (922)
Q Consensus 242 ~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---~~-~~l~~~~~~-~~~gs~IivTtR~~~v---------~~~~~~~ 307 (922)
..+...++. .-+||+||++... .| +.+...+.. ...+.++|+||+.... ...+...
T Consensus 82 ---------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~ 151 (226)
T TIGR03420 82 ---------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWG 151 (226)
T ss_pred ---------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcC
Confidence 011112222 2389999997643 22 223222211 1233478898885321 1122224
Q ss_pred ceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHHH
Q 042817 308 KKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITIG 361 (922)
Q Consensus 308 ~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 361 (922)
..+++++++.++-..++...+...... --++..+.+++.+.|.|..+..+-
T Consensus 152 ~~i~l~~l~~~e~~~~l~~~~~~~~~~---~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 152 LVFQLPPLSDEEKIAALQSRAARRGLQ---LPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred eeEecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHhccCCHHHHHHHH
Confidence 578999999999999987755322211 224566778888888887776554
No 43
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.56 E-value=4.2e-07 Score=101.92 Aligned_cols=174 Identities=14% Similarity=0.197 Sum_probs=104.4
Q ss_pred cccchhhHHHH---HHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhc
Q 042817 158 RIIGQESIFDD---AWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKI 234 (922)
Q Consensus 158 ~~vGr~~~~~~---l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 234 (922)
.+||++..+.. +..++.......+.++|++|+||||+|+.+++.. ...|. .++.+. .+...+ +.+.
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~~---~l~a~~-~~~~~i-r~ii--- 81 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT---DAPFE---ALSAVT-SGVKDL-REVI--- 81 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEE---EEeccc-ccHHHH-HHHH---
Confidence 57898888666 7777777777788899999999999999999886 33332 122111 111111 1111
Q ss_pred cCCcccccCCChhhhHHHHHHH-hcCCcEEEEEccCCCc--cccccccccCCCCCCCcEEEE--EcCChh--hh-ccccc
Q 042817 235 DMFSESWKNKSPVEKSCAIFKI-LSNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVF--TTRYKE--VC-GKMEA 306 (922)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iiv--TtR~~~--v~-~~~~~ 306 (922)
+..... ..+++.+|++|+++.. .+.+.+...+. .|..++| ||.+.. +. ...+.
T Consensus 82 ----------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR 142 (413)
T PRK13342 82 ----------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSR 142 (413)
T ss_pred ----------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhcc
Confidence 111111 2457889999999864 23333333332 2444444 344332 11 11122
Q ss_pred cceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHHH
Q 042817 307 HKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITIG 361 (922)
Q Consensus 307 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 361 (922)
...+.+.+++.++...++.+.+.........-..+..+.|++.|+|.+..+..+.
T Consensus 143 ~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 143 AQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred ceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 3678999999999999998865331100002235667889999999997665443
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=2e-08 Score=105.16 Aligned_cols=209 Identities=20% Similarity=0.226 Sum_probs=119.0
Q ss_pred cCCCCceEEEeccCcccccch-hhhccCCCceEEEccCCCCCcc---cCccccCcccCCeeeeccCCccccchh--hccC
Q 042817 535 ATCPHLLTLFLQNNRLSNITA-NFFQFMPSLKVLNLSNNFSLRE---FPPGISKLISLQYLNLSSTGIRVLPEE--LKAL 608 (922)
Q Consensus 535 ~~~~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~L~~~~~l~~---lp~~i~~L~~L~~L~L~~~~i~~lp~~--l~~l 608 (922)
+++++|+...|.++.+...+. +....+++++.|||+.| -+.. +-.....|++|+.|+|+.|++....++ -..+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 567788888888887655543 44677888888888887 4433 333455678888888888876643322 2345
Q ss_pred CCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCceEEEEEechhHHHH
Q 042817 609 KDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSVLSVCLESDQALRK 688 (922)
Q Consensus 609 ~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~ 688 (922)
..|+.|.++.|.....--......+|+|+.|++..|.... .....-.-
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~-------------~~~~~~~i------------------- 244 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL-------------IKATSTKI------------------- 244 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc-------------eecchhhh-------------------
Confidence 6777777777753211111124556777777777663110 00000111
Q ss_pred HhhcccccCcceEEEEcCccccccccccc-ccccccccceeeecccCCcceeecccccccCCCCCccCCcccEEEEecCC
Q 042817 689 FLSSYRLKSSTQTLRLRKLKKESESLRTL-SLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPETSRFHNLHRVGIVNCK 767 (922)
Q Consensus 689 l~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~ 767 (922)
+..|+.|+|+++... ..... ....++.|+.|+++.|.+.++..-.... .--...|++|+.|++..++
T Consensus 245 -------~~~L~~LdLs~N~li--~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s---~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 245 -------LQTLQELDLSNNNLI--DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVES---LDKTHTFPKLEYLNISENN 312 (505)
T ss_pred -------hhHHhhccccCCccc--ccccccccccccchhhhhccccCcchhcCCCccc---hhhhcccccceeeecccCc
Confidence 224455555554410 11111 1456778888888888776642221111 0111358889999988774
Q ss_pred C--CCCCchhhccCCCcEEEEec
Q 042817 768 S--LKDITWLIFAPNLRILEISY 788 (922)
Q Consensus 768 ~--l~~l~~l~~l~~L~~L~L~~ 788 (922)
- +..+..+..+++|+.|.+..
T Consensus 313 I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 313 IRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred cccccccchhhccchhhhhhccc
Confidence 3 44444566678888887654
No 45
>PF13173 AAA_14: AAA domain
Probab=98.52 E-value=1.8e-07 Score=86.33 Aligned_cols=120 Identities=20% Similarity=0.208 Sum_probs=82.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKIL 257 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 257 (922)
.+++.|.|+.|+||||++++++.+. . ....+++++.......... ..+ ..+.+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~---~-~~~~~~yi~~~~~~~~~~~------------------~~~-~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL---L-PPENILYINFDDPRDRRLA------------------DPD-LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh---c-ccccceeeccCCHHHHHHh------------------hhh-hHHHHHHhh
Confidence 3689999999999999999999887 2 3455677765543221100 000 223334444
Q ss_pred cCCcEEEEEccCCCccccccccccCCCCCCCcEEEEEcCChhhhcc------ccccceeecCCCCHHHH
Q 042817 258 SNKKFVLLLDDMWEPVDLTKVGVPIPNSTNASKVVFTTRYKEVCGK------MEAHKKLRVECLTADDA 320 (922)
Q Consensus 258 ~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTtR~~~v~~~------~~~~~~~~l~~L~~~ea 320 (922)
..++.+++||++....+|......+.+..+..+|++|+.+...... .+....+++.||+..|.
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 4578899999999888888877666665667899999997766422 12234679999998774
No 46
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.50 E-value=2.5e-06 Score=98.10 Aligned_cols=171 Identities=12% Similarity=0.079 Sum_probs=108.2
Q ss_pred CCcccchhhHHHHHHHHhcc-----CCeeEEEEEcCCCCcHHHHHHHHHHHhhhc--cCCCc--eEEEEEeCCCCCHHHH
Q 042817 156 EPRIIGQESIFDDAWRCMIE-----EQVGIIGLYGAGGVGKTTLLKQLNNKLCQE--RHDFD--IVIWVVVSKDLNLEKV 226 (922)
Q Consensus 156 ~~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~F~--~~~wv~~s~~~~~~~~ 226 (922)
+..+.|||+++++|...|.. ....++.|+|++|.|||++++.|.+..... ..... .+++|++....+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 45789999999999988864 223578899999999999999998876221 11111 3678888777788889
Q ss_pred HHHHHhhccCCcccccCCChhhhHHHHHHHhc---CCcEEEEEccCCCccc-----cccccccCCCCCCCcEEEE--EcC
Q 042817 227 QEDIGKKIDMFSESWKNKSPVEKSCAIFKILS---NKKFVLLLDDMWEPVD-----LTKVGVPIPNSTNASKVVF--TTR 296 (922)
Q Consensus 227 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~---~kr~LlVlDdv~~~~~-----~~~l~~~~~~~~~gs~Iiv--TtR 296 (922)
...|++++..... .......+....+...+. ....+||||+|+.... +..+... +. ..+++|+| .|.
T Consensus 834 YqvI~qqL~g~~P-~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~-~~-~s~SKLiLIGISN 910 (1164)
T PTZ00112 834 YQVLYKQLFNKKP-PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDW-PT-KINSKLVLIAISN 910 (1164)
T ss_pred HHHHHHHHcCCCC-CccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHH-hh-ccCCeEEEEEecC
Confidence 9999988843221 122233444555555542 2345999999975321 2212111 11 23455444 333
Q ss_pred Chh--------hhccccccceeecCCCCHHHHHHHHHHhhCC
Q 042817 297 YKE--------VCGKMEAHKKLRVECLTADDAWMLFKVKVGE 330 (922)
Q Consensus 297 ~~~--------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~ 330 (922)
..+ +...++ ...+...|.+.++-.+++..++..
T Consensus 911 dlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 911 TMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred chhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHh
Confidence 222 122222 234677999999999999988753
No 47
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.50 E-value=7.1e-07 Score=84.97 Aligned_cols=123 Identities=22% Similarity=0.168 Sum_probs=75.2
Q ss_pred cchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcc
Q 042817 160 IGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSE 239 (922)
Q Consensus 160 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 239 (922)
+|++..++++...+.....+.+.|+|++|+||||+|+++++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 47888999999988776667899999999999999999999872 222356677655443322221111100
Q ss_pred cccCCChhhhHHHHHHHhcCCcEEEEEccCCCc-----cccccccccCCCC---CCCcEEEEEcCChh
Q 042817 240 SWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEP-----VDLTKVGVPIPNS---TNASKVVFTTRYKE 299 (922)
Q Consensus 240 ~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----~~~~~l~~~~~~~---~~gs~IivTtR~~~ 299 (922)
............++.++|+||++.. ..+.......... ..+..||+||....
T Consensus 72 --------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 --------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred --------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0001112223457789999999853 1222222222211 35778888888654
No 48
>PRK04195 replication factor C large subunit; Provisional
Probab=98.49 E-value=8.3e-06 Score=93.48 Aligned_cols=181 Identities=17% Similarity=0.204 Sum_probs=110.7
Q ss_pred CcccchhhHHHHHHHHhcc----CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHh
Q 042817 157 PRIIGQESIFDDAWRCMIE----EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGK 232 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 232 (922)
..++|++..++++.+|+.. ...+.+.|+|++|+||||+|++++++. . |+ .+-++.+...+...+. .++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el---~--~~-~ielnasd~r~~~~i~-~~i~ 86 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY---G--WE-VIELNASDQRTADVIE-RVAG 86 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc---C--CC-EEEEcccccccHHHHH-HHHH
Confidence 3689999999999999864 125789999999999999999999987 1 33 3334455433333322 2222
Q ss_pred hccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCccc------cccccccCCCCCCCcEEEEEcCChh-hhc-c-
Q 042817 233 KIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPVD------LTKVGVPIPNSTNASKVVFTTRYKE-VCG-K- 303 (922)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~------~~~l~~~~~~~~~gs~IivTtR~~~-v~~-~- 303 (922)
...... .....++-+||+|+++.... ...+...+. ..+..||+|+.+.. ... .
T Consensus 87 ~~~~~~----------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 87 EAATSG----------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HhhccC----------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhH
Confidence 211100 00113678999999976422 233322222 12344666664432 111 1
Q ss_pred ccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHHHhhhc
Q 042817 304 MEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITIGRAMS 365 (922)
Q Consensus 304 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~ 365 (922)
-.....+.+.+++.++....+...+....... -.+....|++.++|..-.+......+.
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i---~~eaL~~Ia~~s~GDlR~ain~Lq~~a 207 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGIEC---DDEALKEIAERSGGDLRSAINDLQAIA 207 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 12345789999999999988887765443222 256788999999998766654443343
No 49
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.49 E-value=3.1e-06 Score=97.11 Aligned_cols=190 Identities=16% Similarity=0.204 Sum_probs=109.9
Q ss_pred CcccchhhHHHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhh--
Q 042817 157 PRIIGQESIFDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKK-- 233 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~-- 233 (922)
.++||.+..++.|.+++..+++ +.+-++|..|+||||+|+.+.+..- -...++ +..+..-...+.|...
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn-Ce~~~~-------~~PCG~C~sCr~I~~G~h 87 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN-CETGVT-------SQPCGVCRACREIDEGRF 87 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CccCCC-------CCCCcccHHHHHHhcCCC
Confidence 3689999999999999987653 4667999999999999999988762 111110 0011111111111110
Q ss_pred ---ccCCcccccCCChhhhHHHHHHH----hcCCcEEEEEccCCCcc--ccccccccCCCCCCCcEEEEEcCChh-hhcc
Q 042817 234 ---IDMFSESWKNKSPVEKSCAIFKI----LSNKKFVLLLDDMWEPV--DLTKVGVPIPNSTNASKVVFTTRYKE-VCGK 303 (922)
Q Consensus 234 ---l~~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTtR~~~-v~~~ 303 (922)
+.+... .....++....+... ..++.-++|||+++... .+..+...+..-....++|+||++.. +...
T Consensus 88 ~DviEIDAa--s~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~T 165 (830)
T PRK07003 88 VDYVEMDAA--SNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVT 165 (830)
T ss_pred ceEEEeccc--ccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccch
Confidence 000000 001111111111111 12455689999998753 35555444433345677777777654 3222
Q ss_pred -ccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCch-hHHHH
Q 042817 304 -MEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLP-LAIIT 359 (922)
Q Consensus 304 -~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~ 359 (922)
.+....+.++.++.++..+.+.+.+..+... -..+..+.|++.++|.. -|+..
T Consensus 166 IrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~---id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 166 VLSRCLQFNLKQMPAGHIVSHLERILGEERIA---FEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred hhhheEEEecCCcCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 2234678999999999999998877544322 12566788999998865 34444
No 50
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=2.9e-08 Score=104.00 Aligned_cols=157 Identities=22% Similarity=0.210 Sum_probs=104.9
Q ss_pred cccceEEeeeccccccccc---ccCCCCceEEEeccCcccccc--hhhhccCCCceEEEccCCCCCcccCcc--ccCccc
Q 042817 515 WKGVKRMSLMNNKIRNLSE---PATCPHLLTLFLQNNRLSNIT--ANFFQFMPSLKVLNLSNNFSLREFPPG--ISKLIS 587 (922)
Q Consensus 515 ~~~l~~l~l~~~~~~~~~~---~~~~~~L~~L~l~~~~l~~~~--~~~~~~l~~L~~L~L~~~~~l~~lp~~--i~~L~~ 587 (922)
+++++.+++.++.+...+. ...|++++.|+|++|-+..+. ..+...+++|+.|+|+.| .+...-++ -..+.+
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLLLSH 198 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhhhhh
Confidence 4567777887777665552 377999999999998655443 345678899999999988 44332222 235788
Q ss_pred CCeeeeccCCcc--ccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHH
Q 042817 588 LQYLNLSSTGIR--VLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIE 665 (922)
Q Consensus 588 L~~L~L~~~~i~--~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 665 (922)
|+.|.|++|.++ .+-..+..+++|+.|++..|..+..-... ...+..|++|++++|..+. .....
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~------------~~~~~ 265 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLID------------FDQGY 265 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCcccc------------ccccc
Confidence 999999999887 44445667889999999988422211111 3456778899999887542 11233
Q ss_pred HhhcCCCCceEEEEEechhH
Q 042817 666 ELLCLNHLSVLSVCLESDQA 685 (922)
Q Consensus 666 ~L~~L~~L~~L~l~~~~~~~ 685 (922)
.++.++.|..|+++.++..+
T Consensus 266 ~~~~l~~L~~Lnls~tgi~s 285 (505)
T KOG3207|consen 266 KVGTLPGLNQLNLSSTGIAS 285 (505)
T ss_pred ccccccchhhhhccccCcch
Confidence 45667777777776555443
No 51
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.45 E-value=5.1e-05 Score=88.91 Aligned_cols=202 Identities=16% Similarity=0.106 Sum_probs=116.9
Q ss_pred CcccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCC---ceEEEEEeCCC---CCHHHHHHHH
Q 042817 157 PRIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDF---DIVIWVVVSKD---LNLEKVQEDI 230 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F---~~~~wv~~s~~---~~~~~~~~~i 230 (922)
+.++|++..+..+.+.+.......+.|+|++|+||||+|+.+++.. .....+ ...-|+.+... .+...+...+
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l 232 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPL 232 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence 3679999999988888765556689999999999999999998876 222222 12234443321 1222221111
Q ss_pred ---------------HhhccCCc----------------ccccCCChhhhHHHHHHHhcCCcEEEEEccCCCc--ccccc
Q 042817 231 ---------------GKKIDMFS----------------ESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEP--VDLTK 277 (922)
Q Consensus 231 ---------------~~~l~~~~----------------~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~ 277 (922)
+...+... +..... ....+..+.+.++++++.++-|+.|.. ..|+.
T Consensus 233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-d~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ 311 (615)
T TIGR02903 233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-DPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKY 311 (615)
T ss_pred cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-CHHHHHHHHHHHhhCeEEeecceeccCCcccchh
Confidence 11111100 000111 223466788888899999997777654 34666
Q ss_pred ccccCCCCCCCcEEEE--EcCChhhhc-cc-cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCc
Q 042817 278 VGVPIPNSTNASKVVF--TTRYKEVCG-KM-EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGL 353 (922)
Q Consensus 278 l~~~~~~~~~gs~Iiv--TtR~~~v~~-~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 353 (922)
+...+....+...|++ ||++..... .+ +....+.+.+++.+|.+.++.+.+....... -.+..+.|.+.+..-
T Consensus 312 ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~l---s~eal~~L~~ys~~g 388 (615)
T TIGR02903 312 IKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHL---AAGVEELIARYTIEG 388 (615)
T ss_pred hhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHCCCcH
Confidence 6655555445554555 566543211 11 1224678899999999999998765332111 134445555555444
Q ss_pred hhHHHHHHhh
Q 042817 354 PLAIITIGRA 363 (922)
Q Consensus 354 PLai~~~g~~ 363 (922)
+-|+..++..
T Consensus 389 Rraln~L~~~ 398 (615)
T TIGR02903 389 RKAVNILADV 398 (615)
T ss_pred HHHHHHHHHH
Confidence 5555555433
No 52
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.45 E-value=1.2e-07 Score=106.79 Aligned_cols=121 Identities=27% Similarity=0.444 Sum_probs=75.6
Q ss_pred Eeeecccc-cccccccCCCCceEEEeccCcccccchhhhccCC-CceEEEccCCCCCcccCccccCcccCCeeeeccCCc
Q 042817 521 MSLMNNKI-RNLSEPATCPHLLTLFLQNNRLSNITANFFQFMP-SLKVLNLSNNFSLREFPPGISKLISLQYLNLSSTGI 598 (922)
Q Consensus 521 l~l~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~-~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i 598 (922)
+....+.+ .........+.+..|.+.++.+..+++. ...+. +|+.|+++++ .+..+|..++.+++|+.|++++|.+
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCccc-cccchhhccccccccc-chhhhhhhhhccccccccccCCchh
Confidence 44444444 3333334446667777777766666654 33442 6777777777 6667766677777777777777777
Q ss_pred cccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCC
Q 042817 599 RVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 599 ~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 645 (922)
..+|...+.+++|+.|++++|. +..+|.. +..+..|++|.+.++.
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~-~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGNK-ISDLPPE-IELLSALEELDLSNNS 220 (394)
T ss_pred hhhhhhhhhhhhhhheeccCCc-cccCchh-hhhhhhhhhhhhcCCc
Confidence 7777666666777777777775 4666653 3445557777666653
No 53
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.43 E-value=2.3e-06 Score=103.54 Aligned_cols=265 Identities=14% Similarity=0.213 Sum_probs=151.4
Q ss_pred ccchhhHHHHHHHHhcc---CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCC---HHHHHHHHHh
Q 042817 159 IIGQESIFDDAWRCMIE---EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLN---LEKVQEDIGK 232 (922)
Q Consensus 159 ~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~---~~~~~~~i~~ 232 (922)
++||+.+++.+...+.+ +...++.+.|..|||||+|+++|.....+.++.|-.-.+-....+.. ..+..++++.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 68999999999998864 45679999999999999999999998833322221111111222222 2222333333
Q ss_pred hc-------------------cCCccc--------------------ccCCChhhh-----HHHHHHHh-cCCcEEEEEc
Q 042817 233 KI-------------------DMFSES--------------------WKNKSPVEK-----SCAIFKIL-SNKKFVLLLD 267 (922)
Q Consensus 233 ~l-------------------~~~~~~--------------------~~~~~~~~~-----~~~l~~~l-~~kr~LlVlD 267 (922)
++ +..... ......... ...+.... +.++..+|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 22 111100 000111111 12223333 3469999999
Q ss_pred cC-CCccc-c---ccccccCCC-CCCCcEEEEEcCChh----hhccccccceeecCCCCHHHHHHHHHHhhCCCCCCCCC
Q 042817 268 DM-WEPVD-L---TKVGVPIPN-STNASKVVFTTRYKE----VCGKMEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHP 337 (922)
Q Consensus 268 dv-~~~~~-~---~~l~~~~~~-~~~gs~IivTtR~~~----v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~ 337 (922)
|+ |-... + ..+.....- ......|..+..... +-........+.+.||+..+...+.....+... .
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~----~ 237 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK----L 237 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc----c
Confidence 99 32211 1 111111110 000112222222221 122223446899999999999999988876532 2
Q ss_pred ChhHHHHHHHHHhCCchhHHHHHHhhhccC------CCHHHHHHHHHHHhccCCCCCCccchhhhhhhhcCCCCCchhhh
Q 042817 338 EIPKHAQLVAKECGGLPLAIITIGRAMSCK------NKLEEWKHAVNVLKKSSSKFPGMDAMYPHLKFSYDRLPDNKIRS 411 (922)
Q Consensus 338 ~~~~~~~~i~~~c~glPLai~~~g~~L~~~------~~~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~ 411 (922)
...+..+.|+++..|.|+-+.-+-..+... .+...|..-...+.. .+..+.+...+..-.+.||. ..+.
T Consensus 238 ~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~----~~~~~~vv~~l~~rl~kL~~-~t~~ 312 (849)
T COG3899 238 LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI----LATTDAVVEFLAARLQKLPG-TTRE 312 (849)
T ss_pred ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC----chhhHHHHHHHHHHHhcCCH-HHHH
Confidence 335688999999999999999888887763 333445442222211 11222445567788899998 7899
Q ss_pred hhhhcccCCCCCccCHHHHHHHH
Q 042817 412 CFLYCSLFPEDYKISKEDLIDCW 434 (922)
Q Consensus 412 cfl~~s~fp~~~~i~~~~li~~W 434 (922)
.+-..|++-..+ +.+.|...|
T Consensus 313 Vl~~AA~iG~~F--~l~~La~l~ 333 (849)
T COG3899 313 VLKAAACIGNRF--DLDTLAALA 333 (849)
T ss_pred HHHHHHHhCccC--CHHHHHHHH
Confidence 988888886544 444454443
No 54
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.43 E-value=9.6e-09 Score=106.92 Aligned_cols=285 Identities=19% Similarity=0.208 Sum_probs=161.1
Q ss_pred cceEEeeecccccccccc----cCCCCceEEEeccCc-ccccc-hhhhccCCCceEEEccCCCCCcccC--ccccCcccC
Q 042817 517 GVKRMSLMNNKIRNLSEP----ATCPHLLTLFLQNNR-LSNIT-ANFFQFMPSLKVLNLSNNFSLREFP--PGISKLISL 588 (922)
Q Consensus 517 ~l~~l~l~~~~~~~~~~~----~~~~~L~~L~l~~~~-l~~~~-~~~~~~l~~L~~L~L~~~~~l~~lp--~~i~~L~~L 588 (922)
.++.|++.+..-....+. ..|++++.|.+.+|. ++... ..+-..+++|++|+|..|..++... .....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 567778877654333222 689999999999884 33322 2223568899999999987776532 234568999
Q ss_pred CeeeeccC-Cccc--cchhhccCCCCCEEeCCCCccccccChhhh----CCCCCCCEEEeecCCcccccccCcccccCcc
Q 042817 589 QYLNLSST-GIRV--LPEELKALKDLSYLNMERTSFVRRIPRQLI----SNFPLLRVLRMLDCGALERAEHGSVLFNGGE 661 (922)
Q Consensus 589 ~~L~L~~~-~i~~--lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 661 (922)
.||+++.| .|+. +..-...+++|+.+.++||. ..+.+.+ ....-+-++++..|..+. +.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~---e~~le~l~~~~~~~~~i~~lnl~~c~~lT-----------D~ 284 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL---ELELEALLKAAAYCLEILKLNLQHCNQLT-----------DE 284 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccc---cccHHHHHHHhccChHhhccchhhhcccc-----------ch
Confidence 99999998 4442 22234456668888778874 3333323 233334555555664331 11
Q ss_pred chHHHhhcCCCCceEEEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccc-cccccccceeeecccCCcc-ee
Q 042817 662 ILIEELLCLNHLSVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLS-LTDMEKLRNLFIADSSFEK-LQ 739 (922)
Q Consensus 662 ~~~~~L~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-l~~~~~L~~L~i~~~~~~~-l~ 739 (922)
....--..+. .|+.|..++|.... +..... ..++++|+.|.+++|.... ..
T Consensus 285 ~~~~i~~~c~--------------------------~lq~l~~s~~t~~~-d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ 337 (483)
T KOG4341|consen 285 DLWLIACGCH--------------------------ALQVLCYSSCTDIT-DEVLWALGQHCHNLQVLELSGCQQFSDRG 337 (483)
T ss_pred HHHHHhhhhh--------------------------HhhhhcccCCCCCc-hHHHHHHhcCCCceEEEeccccchhhhhh
Confidence 1111111223 34444444443100 000011 2345777777777775422 11
Q ss_pred ecccccccCCCCCccCCcccEEEEecCCCCCCC--ch-hhccCCCcEEEEeccccchhhhcccccccccccCCCCCCccC
Q 042817 740 IDCVGEIRKTPETSRFHNLHRVGIVNCKSLKDI--TW-LIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPF 816 (922)
Q Consensus 740 ~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l--~~-l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~f 816 (922)
...++ .+.+.|+.+++.+|....+- .. -.++|.|+.|.|+.|..+++...... . ......
T Consensus 338 ft~l~--------rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l-------~--~~~c~~ 400 (483)
T KOG4341|consen 338 FTMLG--------RNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL-------S--SSSCSL 400 (483)
T ss_pred hhhhh--------cCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh-------h--hccccc
Confidence 11111 23567888888877544433 12 23578888888888877665421000 0 123445
Q ss_pred CccceeecCcccccccccc-CCcCCCCccEEEecCCCCCCCCCC
Q 042817 817 AKLESLKLARLPNLESVYW-TPLSFSHLKEIRIFKCPRLWKLPL 859 (922)
Q Consensus 817 p~L~~L~L~~~~~L~~l~~-~~~~~p~L~~L~i~~C~~L~~lp~ 859 (922)
..|+.|.+++||.+.+-.. ....+++|+.+++.+|...++-|.
T Consensus 401 ~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i 444 (483)
T KOG4341|consen 401 EGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAI 444 (483)
T ss_pred cccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhh
Confidence 6778888888887655332 223477888888888877666443
No 55
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.43 E-value=1.7e-06 Score=90.71 Aligned_cols=169 Identities=17% Similarity=0.269 Sum_probs=100.9
Q ss_pred cccchhhHH---HHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCC-CHHHHHHHHHhh
Q 042817 158 RIIGQESIF---DDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDL-NLEKVQEDIGKK 233 (922)
Q Consensus 158 ~~vGr~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~ 233 (922)
++||.+..+ .-|...+..+.+.-.-+||++|+||||||+.++... ...|.. ++... ++.++.
T Consensus 25 e~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~-----~sAv~~gvkdlr------ 90 (436)
T COG2256 25 EVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAFEA-----LSAVTSGVKDLR------ 90 (436)
T ss_pred HhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCceEE-----eccccccHHHHH------
Confidence 345554443 123344555677888899999999999999999987 455532 22221 222222
Q ss_pred ccCCcccccCCChhhhHHHH-HHHhcCCcEEEEEccCCCc--cccccccccCCCCCCCcEEEE--EcCChhh---hcccc
Q 042817 234 IDMFSESWKNKSPVEKSCAI-FKILSNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVF--TTRYKEV---CGKME 305 (922)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~l-~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iiv--TtR~~~v---~~~~~ 305 (922)
+..+.- .....+++.+|++|.|..- .+-+.+ +|...+|.-|+| ||-++.- ....+
T Consensus 91 --------------~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlS 153 (436)
T COG2256 91 --------------EIIEEARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLS 153 (436)
T ss_pred --------------HHHHHHHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhh
Confidence 111222 1223489999999999643 333333 444566776776 5555432 12223
Q ss_pred ccceeecCCCCHHHHHHHHHHhhCCCC--CC-CCCCh-hHHHHHHHHHhCCchhHH
Q 042817 306 AHKKLRVECLTADDAWMLFKVKVGEDT--ID-SHPEI-PKHAQLVAKECGGLPLAI 357 (922)
Q Consensus 306 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~--~~-~~~~~-~~~~~~i~~~c~glPLai 357 (922)
...++.+++|+.+|-.+++.+.+.... .. ....+ ++.-.-+++.++|.--++
T Consensus 154 R~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 154 RARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred hhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 457899999999999999988442221 11 11222 346677888888876443
No 56
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.42 E-value=4e-07 Score=93.26 Aligned_cols=91 Identities=15% Similarity=0.169 Sum_probs=63.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCC--CCHHHHHHHHHhhccCCcccccCCCh------hh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKD--LNLEKVQEDIGKKIDMFSESWKNKSP------VE 248 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~~------~~ 248 (922)
.-..++|+|++|+|||||++++++.. . ..+|+.++|+.+++. .++.++++.+...+-.... ..... ..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l-~-~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~--~~~~~~~~~~~~~ 90 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAI-T-KNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF--DEPPERHVQVAEM 90 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-c-cccCCeEEEEEEccCCCccHHHHHHHhccEEEEecC--CCCHHHHHHHHHH
Confidence 44689999999999999999999997 3 348999999998777 7899999999443322111 11111 11
Q ss_pred hHHHHHHH-hcCCcEEEEEccCCC
Q 042817 249 KSCAIFKI-LSNKKFVLLLDDMWE 271 (922)
Q Consensus 249 ~~~~l~~~-l~~kr~LlVlDdv~~ 271 (922)
........ -.+++.++++|++..
T Consensus 91 ~~~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 91 VLEKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHHHCCCCEEEEEECHHH
Confidence 11222222 247999999999854
No 57
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.7e-05 Score=86.31 Aligned_cols=199 Identities=17% Similarity=0.185 Sum_probs=128.1
Q ss_pred CcccchhhHHHHHHHHhcc----CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHh
Q 042817 157 PRIIGQESIFDDAWRCMIE----EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGK 232 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 232 (922)
..+.+||.+++++...|.. ....-+.|+|.+|.|||+.++.|.+.........+ +++|++-...+..+++..|+.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHH
Confidence 4589999999999988753 22233899999999999999999999832222232 899999999999999999999
Q ss_pred hccCCcccccCCChhhhHHHHHHHhc--CCcEEEEEccCCCccccc--cccccCCCCCC-CcEEE--EEcCChhh-----
Q 042817 233 KIDMFSESWKNKSPVEKSCAIFKILS--NKKFVLLLDDMWEPVDLT--KVGVPIPNSTN-ASKVV--FTTRYKEV----- 300 (922)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~--~l~~~~~~~~~-gs~Ii--vTtR~~~v----- 300 (922)
+++.... ......+..+.+.+.+. ++.+++|||+++....-. -+...+..... .++|+ ..+-+...
T Consensus 96 ~~~~~p~--~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 96 KLGKVPL--TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HcCCCCC--CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhh
Confidence 9963221 34556666677777774 589999999997643221 11111111111 34433 33333332
Q ss_pred ---hccccccceeecCCCCHHHHHHHHHHhhC---CCCCCCCCChhHHHHHHHHHhCC-chhHHHHH
Q 042817 301 ---CGKMEAHKKLRVECLTADDAWMLFKVKVG---EDTIDSHPEIPKHAQLVAKECGG-LPLAIITI 360 (922)
Q Consensus 301 ---~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~---~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~ 360 (922)
...++. ..+..+|-+.+|-...+..++. ... ..+...-+++..++..-+| .=.|+..+
T Consensus 174 ~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~-~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 174 PRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAG-VIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCC-CcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 222222 3478899999999999988763 222 2334444455555555554 33454443
No 58
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.41 E-value=3.4e-06 Score=92.85 Aligned_cols=193 Identities=15% Similarity=0.142 Sum_probs=108.8
Q ss_pred CcccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCc-eEEEEEeCCCCCHHHHHHHHHh---
Q 042817 157 PRIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFD-IVIWVVVSKDLNLEKVQEDIGK--- 232 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~--- 232 (922)
..++|++..++.+..++..+..+.+.++|++|+||||+|+++++.. . ...+. ..+.++++...+ .....+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l-~-~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~ 90 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAREL-Y-GDPWENNFTEFNVADFFD--QGKKYLVEDPR 90 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh-c-CcccccceEEechhhhhh--cchhhhhcCcc
Confidence 4689999999999999887766678899999999999999999886 2 22222 234555433110 00000000
Q ss_pred ---hccCCcccccCCChhhhHHHHH-HHh-----cCCcEEEEEccCCCcc--ccccccccCCCCCCCcEEEEEcCChh-h
Q 042817 233 ---KIDMFSESWKNKSPVEKSCAIF-KIL-----SNKKFVLLLDDMWEPV--DLTKVGVPIPNSTNASKVVFTTRYKE-V 300 (922)
Q Consensus 233 ---~l~~~~~~~~~~~~~~~~~~l~-~~l-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTtR~~~-v 300 (922)
.++... . ......+..+.+. ... ...+-+||+||+.... ....+...+......+++|+||.... +
T Consensus 91 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~ 168 (337)
T PRK12402 91 FAHFLGTDK-R-IRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKL 168 (337)
T ss_pred hhhhhhhhh-h-hccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhC
Confidence 000000 0 0001111112211 111 1345589999996542 12223222222234567887775432 2
Q ss_pred hccc-cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHH
Q 042817 301 CGKM-EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAII 358 (922)
Q Consensus 301 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 358 (922)
...+ +....+.+.+++.++....+...+...... --.+..+.+++.++|.+-.+.
T Consensus 169 ~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~---~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 169 IPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD---YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred chhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 2211 223578899999999999988876443322 225677888899988765544
No 59
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.41 E-value=5.3e-06 Score=89.67 Aligned_cols=176 Identities=15% Similarity=0.218 Sum_probs=113.9
Q ss_pred cccchhhHHHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhh---ccCCCceEEEEEe-CCCCCHHHHHHHHHh
Q 042817 158 RIIGQESIFDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQ---ERHDFDIVIWVVV-SKDLNLEKVQEDIGK 232 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~F~~~~wv~~-s~~~~~~~~~~~i~~ 232 (922)
.++|.+..++.+.+.+..+.. +.+-++|+.|+||||+|+.++...-. ...|+|...|... +....+.++. ++.+
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir-~~~~ 83 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIR-NIIE 83 (313)
T ss_pred hccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHH-HHHH
Confidence 578999999999999977654 57789999999999999999986511 2346676555542 2223333322 2222
Q ss_pred hccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCC--ccccccccccCCCCCCCcEEEEEcCChhhh-cc-ccccc
Q 042817 233 KIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWE--PVDLTKVGVPIPNSTNASKVVFTTRYKEVC-GK-MEAHK 308 (922)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IivTtR~~~v~-~~-~~~~~ 308 (922)
.+.... ..+++-++|+|+++. ...+..+...+..-..++.+|++|.+.+.. .. .+...
T Consensus 84 ~~~~~p------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~ 145 (313)
T PRK05564 84 EVNKKP------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQ 145 (313)
T ss_pred HHhcCc------------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhce
Confidence 222110 124555677777654 455666766666556788888888765432 21 12346
Q ss_pred eeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHH
Q 042817 309 KLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIIT 359 (922)
Q Consensus 309 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 359 (922)
.+.+.++++++....+....... ..+.+..++..++|.|..+..
T Consensus 146 ~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 146 IYKLNRLSKEEIEKFISYKYNDI-------KEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred eeeCCCcCHHHHHHHHHHHhcCC-------CHHHHHHHHHHcCCCHHHHHH
Confidence 88999999999988776554211 134477889999999875543
No 60
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.41 E-value=2.2e-07 Score=73.01 Aligned_cols=58 Identities=41% Similarity=0.666 Sum_probs=30.5
Q ss_pred CceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccC-ccccCcccCCeeeeccCC
Q 042817 539 HLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFP-PGISKLISLQYLNLSSTG 597 (922)
Q Consensus 539 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~L~~~~ 597 (922)
+|++|++++|.+..+++..|.++++|++|++++| .++.+| ..+.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4555555555555555555555555555555555 444433 234555555555555554
No 61
>PRK08727 hypothetical protein; Validated
Probab=98.39 E-value=3.6e-06 Score=86.41 Aligned_cols=166 Identities=9% Similarity=0.066 Sum_probs=96.6
Q ss_pred ccc-hhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCC
Q 042817 159 IIG-QESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMF 237 (922)
Q Consensus 159 ~vG-r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 237 (922)
|++ -...+..+.....+.....+.|+|..|+|||+||+++++... . ....+.|+++.+ ....+.
T Consensus 21 f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~-~--~~~~~~y~~~~~------~~~~~~------ 85 (233)
T PRK08727 21 YIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAE-Q--AGRSSAYLPLQA------AAGRLR------ 85 (233)
T ss_pred ccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHH-H--cCCcEEEEeHHH------hhhhHH------
Confidence 444 333444444433333445799999999999999999999872 2 223556665322 111111
Q ss_pred cccccCCChhhhHHHHHHHhcCCcEEEEEccCCCcc---cccc-ccccCCC-CCCCcEEEEEcCChh---------hhcc
Q 042817 238 SESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPV---DLTK-VGVPIPN-STNASKVVFTTRYKE---------VCGK 303 (922)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---~~~~-l~~~~~~-~~~gs~IivTtR~~~---------v~~~ 303 (922)
...+.+ .+.-+||+||+.... .|.. +...+.. ..+|..||+|++... +...
T Consensus 86 --------------~~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SR 150 (233)
T PRK08727 86 --------------DALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSR 150 (233)
T ss_pred --------------HHHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHH
Confidence 011112 123489999996432 2221 1111111 123566999998532 2223
Q ss_pred ccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHH
Q 042817 304 MEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAI 357 (922)
Q Consensus 304 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 357 (922)
+.....+++++++.++-.+++.+++....... -++...-|++.++|..-++
T Consensus 151 l~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l---~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 151 LAQCIRIGLPVLDDVARAAVLRERAQRRGLAL---DEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HhcCceEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhCCCCHHHH
Confidence 33456889999999999999998764332222 2566778888888766554
No 62
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.38 E-value=6.6e-07 Score=94.44 Aligned_cols=289 Identities=17% Similarity=0.171 Sum_probs=180.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCC-ceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDF-DIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFK 255 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 255 (922)
..+.+.++|.|||||||++-++.. . ..-| +.+.++....-.+...+.-.....++.+. .+.+.....+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~---~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~-----~~g~~~~~~~~~ 83 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-A---ASEYADGVAFVDLAPITDPALVFPTLAGALGLHV-----QPGDSAVDTLVR 83 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-H---hhhcccceeeeeccccCchhHhHHHHHhhccccc-----ccchHHHHHHHH
Confidence 457899999999999999999988 4 3345 67888888888888888877777777653 222334456777
Q ss_pred HhcCCcEEEEEccCCCccc-cccccccCCCCCCCcEEEEEcCChhhhccccccceeecCCCCHH-HHHHHHHHhhCCCC-
Q 042817 256 ILSNKKFVLLLDDMWEPVD-LTKVGVPIPNSTNASKVVFTTRYKEVCGKMEAHKKLRVECLTAD-DAWMLFKVKVGEDT- 332 (922)
Q Consensus 256 ~l~~kr~LlVlDdv~~~~~-~~~l~~~~~~~~~gs~IivTtR~~~v~~~~~~~~~~~l~~L~~~-ea~~Lf~~~~~~~~- 332 (922)
...++|.++|+||..+..+ -..+...+..+...-.|+.|+|..-.. .....+.+++|+.. ++.++|...+....
T Consensus 84 ~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred HHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhcc
Confidence 8889999999999866422 111222222333445688888865432 34556778888764 79999987763221
Q ss_pred -CCCCCChhHHHHHHHHHhCCchhHHHHHHhhhccCCCHHH---HHHHHHHHhccCCCCCC--ccchhhhhhhhcCCCCC
Q 042817 333 -IDSHPEIPKHAQLVAKECGGLPLAIITIGRAMSCKNKLEE---WKHAVNVLKKSSSKFPG--MDAMYPHLKFSYDRLPD 406 (922)
Q Consensus 333 -~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~~---w~~~~~~l~~~~~~~~~--~~~~~~~l~~sy~~L~~ 406 (922)
..-.........+|.++..|.|++|...++..+.-...+. ..+-...+... ..... .......+.+||.-|..
T Consensus 161 ~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtg 239 (414)
T COG3903 161 SFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTG 239 (414)
T ss_pred ceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhh
Confidence 1122344678899999999999999999888765322111 11111112211 11111 11677889999999998
Q ss_pred chhhhhhhhcccCCCCCccCHHHHHHHHhhcCCccccccchhhHhhHHHHHHHHHHhcccccc---CcceEEEcceeehh
Q 042817 407 NKIRSCFLYCSLFPEDYKISKEDLIDCWIGEEFFDEEHNGIGARNEGYAIIGDLIRTCLLEED---ADDFVELHDVVRDM 483 (922)
Q Consensus 407 ~~~k~cfl~~s~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~~~~~~~~~~L~~~sll~~~---~~~~~~mHdlv~~~ 483 (922)
..+.-|--++.|...+.-.. ..|.+.|-... .........+..+++.++.... ....|+.-+-++.|
T Consensus 240 -we~~~~~rLa~~~g~f~~~l----~~~~a~g~~~~-----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Y 309 (414)
T COG3903 240 -WERALFGRLAVFVGGFDLGL----ALAVAAGADVD-----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRY 309 (414)
T ss_pred -HHHHHhcchhhhhhhhcccH----HHHHhcCCccc-----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 78899999999987776542 33444432210 1223333445666777765432 22233333444444
Q ss_pred HHHHH
Q 042817 484 ALWIA 488 (922)
Q Consensus 484 a~~~~ 488 (922)
+..+-
T Consensus 310 alaeL 314 (414)
T COG3903 310 ALAEL 314 (414)
T ss_pred HHHHH
Confidence 44433
No 63
>PLN03150 hypothetical protein; Provisional
Probab=98.38 E-value=7.3e-07 Score=105.19 Aligned_cols=107 Identities=26% Similarity=0.376 Sum_probs=89.1
Q ss_pred CceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeeeccCCcc-ccchhhccCCCCCEEeCC
Q 042817 539 HLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSSTGIR-VLPEELKALKDLSYLNME 617 (922)
Q Consensus 539 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~l~ 617 (922)
.++.|+|++|.+....+..+..+++|+.|+|++|.....+|..++.+++|++|+|++|.+. .+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999888766666899999999999999444588989999999999999999987 789999999999999999
Q ss_pred CCccccccChhhhCC-CCCCCEEEeecCCc
Q 042817 618 RTSFVRRIPRQLISN-FPLLRVLRMLDCGA 646 (922)
Q Consensus 618 ~~~~l~~lp~~~i~~-l~~L~~L~l~~~~~ 646 (922)
+|.....+|.. +.. +.++..+++.+|..
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCcc
Confidence 99877788887 444 45677888887653
No 64
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.38 E-value=1.6e-07 Score=93.46 Aligned_cols=126 Identities=20% Similarity=0.255 Sum_probs=66.9
Q ss_pred CCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCceEEEEEechhHHH
Q 042817 608 LKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSVLSVCLESDQALR 687 (922)
Q Consensus 608 l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~ 687 (922)
.+.|..||+++|. +..+..+ ..-+|.++.|++++|+.. .+..|..|.+|..|+++.+......
T Consensus 283 Wq~LtelDLS~N~-I~~iDES-vKL~Pkir~L~lS~N~i~---------------~v~nLa~L~~L~~LDLS~N~Ls~~~ 345 (490)
T KOG1259|consen 283 WQELTELDLSGNL-ITQIDES-VKLAPKLRRLILSQNRIR---------------TVQNLAELPQLQLLDLSGNLLAECV 345 (490)
T ss_pred Hhhhhhccccccc-hhhhhhh-hhhccceeEEecccccee---------------eehhhhhcccceEeecccchhHhhh
Confidence 3455555666554 3445443 444555566666555422 2333555555556666555444444
Q ss_pred HHhhcccccCcceEEEEcCcccccccccccc-cccccccceeeecccCCccee-ecccccccCCCCCccCCcccEEEEec
Q 042817 688 KFLSSYRLKSSTQTLRLRKLKKESESLRTLS-LTDMEKLRNLFIADSSFEKLQ-IDCVGEIRKTPETSRFHNLHRVGIVN 765 (922)
Q Consensus 688 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-l~~~~~L~~L~i~~~~~~~l~-~~~~~~~~~~~~~~~l~~L~~L~L~~ 765 (922)
.|-. .+.+++.|.+..+. ++.++ +..+-+|..|++++|++.++. .. .++++|.|+.|.|.+
T Consensus 346 Gwh~---KLGNIKtL~La~N~-----iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~---------~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 346 GWHL---KLGNIKTLKLAQNK-----IETLSGLRKLYSLVNLDLSSNQIEELDEVN---------HIGNLPCLETLRLTG 408 (490)
T ss_pred hhHh---hhcCEeeeehhhhh-----HhhhhhhHhhhhheeccccccchhhHHHhc---------ccccccHHHHHhhcC
Confidence 3322 23355666665542 33333 566677777777777765531 11 223467777777776
Q ss_pred CC
Q 042817 766 CK 767 (922)
Q Consensus 766 c~ 767 (922)
++
T Consensus 409 NP 410 (490)
T KOG1259|consen 409 NP 410 (490)
T ss_pred CC
Confidence 64
No 65
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.37 E-value=6.4e-08 Score=104.56 Aligned_cols=131 Identities=24% Similarity=0.411 Sum_probs=115.6
Q ss_pred CCccccccceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCC
Q 042817 510 PGIEKWKGVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQ 589 (922)
Q Consensus 510 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 589 (922)
+.++.+..+..++++.|++..+|.....--|++|.+++|+++.+|.+ ++.+..|..||.+.| .+..+|..++.+..|+
T Consensus 115 ~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~-ig~~~tl~~ld~s~n-ei~slpsql~~l~slr 192 (722)
T KOG0532|consen 115 EAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEE-IGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLR 192 (722)
T ss_pred hhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcc-cccchhHHHhhhhhh-hhhhchHHhhhHHHHH
Confidence 34556678889999999999888876666799999999999999988 678999999999999 8999999999999999
Q ss_pred eeeeccCCccccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCC
Q 042817 590 YLNLSSTGIRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 590 ~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 645 (922)
.|+++.|++..+|..++.| .|..||++.|. +..+|-. +.+|+.|++|-+.+|.
T Consensus 193 ~l~vrRn~l~~lp~El~~L-pLi~lDfScNk-is~iPv~-fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 193 DLNVRRNHLEDLPEELCSL-PLIRLDFSCNK-ISYLPVD-FRKMRHLQVLQLENNP 245 (722)
T ss_pred HHHHhhhhhhhCCHHHhCC-ceeeeecccCc-eeecchh-hhhhhhheeeeeccCC
Confidence 9999999999999999954 58999999886 6889987 8999999999999876
No 66
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.37 E-value=1.4e-06 Score=86.72 Aligned_cols=74 Identities=22% Similarity=0.335 Sum_probs=42.9
Q ss_pred cccchhhHHHHHHHHhc---cCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCC-----CHHHHHHH
Q 042817 158 RIIGQESIFDDAWRCMI---EEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDL-----NLEKVQED 229 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-----~~~~~~~~ 229 (922)
.||||+++++++...+. ....+.+.|+|.+|+|||+|+++++... .....+ .+.+.+.... ....++++
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 77 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL-AERGGY--VISINCDDSERNPYSPFRSALRQ 77 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH-HHHT----EEEEEEETTTS-HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH-HhcCCE--EEEEEEeccccchhhHHHHHHHH
Confidence 37999999999999993 2456899999999999999999999998 333222 3344444331 13555666
Q ss_pred HHhhc
Q 042817 230 IGKKI 234 (922)
Q Consensus 230 i~~~l 234 (922)
++.++
T Consensus 78 l~~~~ 82 (185)
T PF13191_consen 78 LIDQL 82 (185)
T ss_dssp HS---
T ss_pred HHHHh
Confidence 65554
No 67
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=5.2e-06 Score=97.25 Aligned_cols=179 Identities=15% Similarity=0.207 Sum_probs=108.4
Q ss_pred CcccchhhHHHHHHHHhccCCee-EEEEEcCCCCcHHHHHHHHHHHhhhccCC-------------------CceEEEEE
Q 042817 157 PRIIGQESIFDDAWRCMIEEQVG-IIGLYGAGGVGKTTLLKQLNNKLCQERHD-------------------FDIVIWVV 216 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-------------------F~~~~wv~ 216 (922)
..+||.+..++.|.+++..+++. .+.++|+.|+||||+|+.+++..-. ... |.-+++++
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc-e~~~~~~pCg~C~sC~~i~~g~~~DviEid 94 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC-EQGVTATPCGVCSSCVEIAQGRFVDLIEVD 94 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccC-ccCCCCCCCCCchHHHHHhcCCCceEEEec
Confidence 36899999999999998876654 4579999999999999999988721 111 11112221
Q ss_pred eCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHH-HhcCCcEEEEEccCCCc--cccccccccCCCCCCCcEEEE
Q 042817 217 VSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFK-ILSNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVF 293 (922)
Q Consensus 217 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iiv 293 (922)
.+....+..+ ++|.+ .+.. -..+++-++|||++... ...+.+...+..-....++|+
T Consensus 95 Aas~~kVDdI-ReLie-------------------~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFIL 154 (944)
T PRK14949 95 AASRTKVDDT-RELLD-------------------NVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLL 154 (944)
T ss_pred cccccCHHHH-HHHHH-------------------HHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 1111111111 11111 1111 12467779999999764 344454444433334566666
Q ss_pred EcCC-hhhhcc-ccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHH
Q 042817 294 TTRY-KEVCGK-MEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIIT 359 (922)
Q Consensus 294 TtR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 359 (922)
+|.+ ..+... ......|++.+++.++..+.+.+.+..... ....+....|++.++|.|--+..
T Consensus 155 aTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI---~~edeAL~lIA~~S~Gd~R~ALn 219 (944)
T PRK14949 155 ATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL---PFEAEALTLLAKAANGSMRDALS 219 (944)
T ss_pred ECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 5554 334322 223368999999999999988876643221 12245778899999998854433
No 68
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=8.5e-06 Score=89.71 Aligned_cols=190 Identities=17% Similarity=0.190 Sum_probs=107.1
Q ss_pred CcccchhhHHHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhcc
Q 042817 157 PRIIGQESIFDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (922)
..++|.+..++.+.+.+..+++ +.+.++|+.|+||||+|+.+++... -..... ...+..-....++.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~-c~~~~~-------~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN-CQNGIT-------SNPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc-CCCCCC-------CCCCCCCHHHHHHhcCCC
Confidence 4689999999999998877554 5678999999999999999998861 111000 000000011111111100
Q ss_pred CCc---ccccCCChhhhHHHHHHHh-----cCCcEEEEEccCCCcc--ccccccccCCCCCCCcEEEEEcCChh-hhcc-
Q 042817 236 MFS---ESWKNKSPVEKSCAIFKIL-----SNKKFVLLLDDMWEPV--DLTKVGVPIPNSTNASKVVFTTRYKE-VCGK- 303 (922)
Q Consensus 236 ~~~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTtR~~~-v~~~- 303 (922)
..- +.......++ ...+.+.+ .+++-++|+|+++... .++.+...+.......++|++|.+.+ +...
T Consensus 88 ~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI 166 (363)
T PRK14961 88 LDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTI 166 (363)
T ss_pred CceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHH
Confidence 000 0000011111 11222222 2355699999997653 34445444443344667777665433 3222
Q ss_pred ccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHH
Q 042817 304 MEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAII 358 (922)
Q Consensus 304 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 358 (922)
.+....+++.+++.++..+.+...+...... -.++.+..|++.++|.|-.+.
T Consensus 167 ~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~---i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 167 LSRCLQFKLKIISEEKIFNFLKYILIKESID---TDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred HhhceEEeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 1223678999999999998888766433211 124567789999999885443
No 69
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=8.8e-06 Score=92.43 Aligned_cols=191 Identities=15% Similarity=0.117 Sum_probs=109.7
Q ss_pred CcccchhhHHHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhcc
Q 042817 157 PRIIGQESIFDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (922)
..++|.+..++.+..++..+.. ..+.++|++|+||||+|+.+++.. .-.+.+...+|.|.+.. .+......-...+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l-~c~~~~~~~cg~C~sc~-~i~~~~h~dv~el~ 91 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAV-NCSGEDPKPCGECESCL-AVRRGAHPDVLEID 91 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH-hccCCCCCCCCcChhhH-HHhcCCCCceEEec
Confidence 3579999999999998877654 466899999999999999999887 21122222233321110 00000000000000
Q ss_pred CCcccccCCChhhhHHHHHHHh-----cCCcEEEEEccCCCc--cccccccccCCCCCCCcEEEEEcCC-hhhhccc-cc
Q 042817 236 MFSESWKNKSPVEKSCAIFKIL-----SNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVFTTRY-KEVCGKM-EA 306 (922)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~-~~v~~~~-~~ 306 (922)
.. .....+. ...+.+.+ .+++-++|+|+++.. ..++.+...+........+|++|.. ..+.... ..
T Consensus 92 ~~----~~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SR 166 (504)
T PRK14963 92 AA----SNNSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSR 166 (504)
T ss_pred cc----ccCCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcc
Confidence 00 0111111 12222222 245679999999754 3355554444433345555555543 3332222 23
Q ss_pred cceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHH
Q 042817 307 HKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAI 357 (922)
Q Consensus 307 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 357 (922)
...+++.+++.++..+.+...+...... --.+....|++.++|.+--+
T Consensus 167 c~~~~f~~ls~~el~~~L~~i~~~egi~---i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 167 TQHFRFRRLTEEEIAGKLRRLLEAEGRE---AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 4578999999999999998877543321 12456788999999988544
No 70
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.33 E-value=9.6e-07 Score=82.16 Aligned_cols=116 Identities=22% Similarity=0.274 Sum_probs=78.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhc--cCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHH
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQE--RHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFK 255 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 255 (922)
-+++.|+|.+|+|||++++.+++..... ...-..++|+.+....+...+.+.|+.+++..... ..+..+..+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~~ 81 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLID 81 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHHH
Confidence 4689999999999999999999987211 00134677999988889999999999999876532 3466777788888
Q ss_pred HhcCCc-EEEEEccCCCc-c--ccccccccCCCCCCCcEEEEEcCC
Q 042817 256 ILSNKK-FVLLLDDMWEP-V--DLTKVGVPIPNSTNASKVVFTTRY 297 (922)
Q Consensus 256 ~l~~kr-~LlVlDdv~~~-~--~~~~l~~~~~~~~~gs~IivTtR~ 297 (922)
.+...+ .+||+|+++.. . .++.+.... + ..+.+||+..+.
T Consensus 82 ~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~-~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 82 ALDRRRVVLLVIDEADHLFSDEFLEFLRSLL-N-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHCTEEEEEEETTHHHHTHHHHHHHHHHT-C-SCBEEEEEEESS
T ss_pred HHHhcCCeEEEEeChHhcCCHHHHHHHHHHH-h-CCCCeEEEEECh
Confidence 887654 59999999764 2 222332222 2 556677776654
No 71
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.32 E-value=1.1e-05 Score=88.16 Aligned_cols=179 Identities=14% Similarity=0.172 Sum_probs=105.6
Q ss_pred CcccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEe--CCCCCHHHHHHHHHhhc
Q 042817 157 PRIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVV--SKDLNLEKVQEDIGKKI 234 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~--s~~~~~~~~~~~i~~~l 234 (922)
..++|+++.++.+..++.....+.+.|+|.+|+||||+|+.+++... ...+. ..++.+ +.......+...+....
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~--~~~~~-~~~i~~~~~~~~~~~~~~~~i~~~~ 93 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY--GEDWR-ENFLELNASDERGIDVIRNKIKEFA 93 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc--CCccc-cceEEeccccccchHHHHHHHHHHH
Confidence 35899999999999999876666789999999999999999999862 22221 122222 22222221111111111
Q ss_pred cCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCcc--ccccccccCCCCCCCcEEEEEcCChh-hhcc-cccccee
Q 042817 235 DMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPV--DLTKVGVPIPNSTNASKVVFTTRYKE-VCGK-MEAHKKL 310 (922)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTtR~~~-v~~~-~~~~~~~ 310 (922)
.... .-...+-++++|+++... ....+...+......+++|+++.... +... ......+
T Consensus 94 ~~~~-----------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~ 156 (319)
T PRK00440 94 RTAP-----------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVF 156 (319)
T ss_pred hcCC-----------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhee
Confidence 0000 001235689999986542 22333333333334566777664322 2111 1123468
Q ss_pred ecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHH
Q 042817 311 RVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAII 358 (922)
Q Consensus 311 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 358 (922)
++.+++.++....+...+...... -.++....+++.++|.+--+.
T Consensus 157 ~~~~l~~~ei~~~l~~~~~~~~~~---i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 157 RFSPLKKEAVAERLRYIAENEGIE---ITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred eeCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 999999999988888776543321 125677889999999876543
No 72
>PLN03025 replication factor C subunit; Provisional
Probab=98.32 E-value=8.2e-06 Score=88.36 Aligned_cols=180 Identities=14% Similarity=0.169 Sum_probs=106.0
Q ss_pred cccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCc-eEEEEEeCCCCCHHHHHHHHHhhccC
Q 042817 158 RIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFD-IVIWVVVSKDLNLEKVQEDIGKKIDM 236 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l~~ 236 (922)
.++|.++.++.+..++..+..+-+-++|++|+||||+|+.+++... ...|. .++-++.+...+...+. .+.+....
T Consensus 14 ~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~~vr-~~i~~~~~ 90 (319)
T PLN03025 14 DIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGIDVVR-NKIKMFAQ 90 (319)
T ss_pred HhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHHHHH-HHHHHHHh
Confidence 5799999999888888776666678999999999999999999861 22232 22223333332322222 11111110
Q ss_pred CcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCcc--ccccccccCCCCCCCcEEEEEcCCh-hhhccc-cccceeec
Q 042817 237 FSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPV--DLTKVGVPIPNSTNASKVVFTTRYK-EVCGKM-EAHKKLRV 312 (922)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTtR~~-~v~~~~-~~~~~~~l 312 (922)
... . .-.++.-++++|+++... .-..+...+......+++|+++... .+.... +....+++
T Consensus 91 ~~~---~------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f 155 (319)
T PLN03025 91 KKV---T------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRF 155 (319)
T ss_pred ccc---c------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccC
Confidence 000 0 001356699999998642 2222222222223456777766543 222211 12357899
Q ss_pred CCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHH
Q 042817 313 ECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAII 358 (922)
Q Consensus 313 ~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 358 (922)
+++++++....+...+......- -.+....|++.++|..-.+.
T Consensus 156 ~~l~~~~l~~~L~~i~~~egi~i---~~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 156 SRLSDQEILGRLMKVVEAEKVPY---VPEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 99999999999888775433221 24567888999988764443
No 73
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.31 E-value=3.2e-07 Score=103.36 Aligned_cols=129 Identities=27% Similarity=0.386 Sum_probs=109.2
Q ss_pred cccccceEEeeecccccccccccCCC--CceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCe
Q 042817 513 EKWKGVKRMSLMNNKIRNLSEPATCP--HLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQY 590 (922)
Q Consensus 513 ~~~~~l~~l~l~~~~~~~~~~~~~~~--~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 590 (922)
...+.+..+++.++.+..+++..... +|+.|++++|.+..++.. +..+++|+.|++++| .+..+|...+.+.+|+.
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCc-hhhhhhhhhhhhhhhhh
Confidence 34467899999999999998876654 899999999999888643 788999999999999 99999998889999999
Q ss_pred eeeccCCccccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCC
Q 042817 591 LNLSSTGIRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 591 L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 645 (922)
|++++|++..+|..++.+..|++|.+++|.. ..++.. +.++.++..|.+.++.
T Consensus 191 L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~-~~~~~~-~~~~~~l~~l~l~~n~ 243 (394)
T COG4886 191 LDLSGNKISDLPPEIELLSALEELDLSNNSI-IELLSS-LSNLKNLSGLELSNNK 243 (394)
T ss_pred eeccCCccccCchhhhhhhhhhhhhhcCCcc-eecchh-hhhcccccccccCCce
Confidence 9999999999999888888899999999963 344443 7888888888866665
No 74
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=9.1e-06 Score=92.36 Aligned_cols=190 Identities=12% Similarity=0.108 Sum_probs=108.1
Q ss_pred CcccchhhHHHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhcc
Q 042817 157 PRIIGQESIFDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (922)
..+||.+..++.+.+++..++. ..+-++|+.|+||||+|+.+++..-. .. ++.. ..++.-...+.|...-.
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC-~~------~~~~-~pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC-ET------GVTS-TPCEVCATCKAVNEGRF 86 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC-Cc------CCCC-CCCccCHHHHHHhcCCC
Confidence 3689999999999999987653 57789999999999999999988611 11 0000 00111111111111000
Q ss_pred CCc---ccccCCChhhhHHHHHHH-----hcCCcEEEEEccCCCc--cccccccccCCCCCCCcEEEEEcCChh-hh-cc
Q 042817 236 MFS---ESWKNKSPVEKSCAIFKI-----LSNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVFTTRYKE-VC-GK 303 (922)
Q Consensus 236 ~~~---~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~~~-v~-~~ 303 (922)
..- +.......++.. .+... ..+++-++|+|+++.. .....+...+.....+.++|++|.+.. +. ..
T Consensus 87 pDviEIDAAs~~~VddIR-eli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TI 165 (702)
T PRK14960 87 IDLIEIDAASRTKVEDTR-ELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITV 165 (702)
T ss_pred CceEEecccccCCHHHHH-HHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHH
Confidence 000 000001111111 11111 1356679999999764 234444433433334567777776543 22 11
Q ss_pred ccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHH
Q 042817 304 MEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAII 358 (922)
Q Consensus 304 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 358 (922)
.+....+++.+++.++..+.+...+...... --.+....|++.++|.+-.+.
T Consensus 166 lSRCq~feFkpLs~eEI~k~L~~Il~kEgI~---id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 166 ISRCLQFTLRPLAVDEITKHLGAILEKEQIA---ADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HHhhheeeccCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 2334688999999999999988776543311 224567789999999875444
No 75
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=8.4e-06 Score=92.39 Aligned_cols=195 Identities=16% Similarity=0.183 Sum_probs=108.7
Q ss_pred CcccchhhHHHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhccCC-CceEEEEEeCCCCCHHHHHHHHHhh-
Q 042817 157 PRIIGQESIFDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQERHD-FDIVIWVVVSKDLNLEKVQEDIGKK- 233 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-F~~~~wv~~s~~~~~~~~~~~i~~~- 233 (922)
.++||.+..++.|.+.+..+++ +.+-++|..|+||||+|+.+.+..-..... -... .+..+......+.|...
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~----~~~PCG~C~sC~~I~aG~ 91 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGI----TAQPCGQCRACTEIDAGR 91 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccC----CCCCCcccHHHHHHHcCC
Confidence 3689999999999999987654 467899999999999999999887210000 0000 00001111111111110
Q ss_pred ----ccCCcccccCCChhhhHHHHHHH----hcCCcEEEEEccCCCc--cccccccccCCCCCCCcEEE-EEcCChhhhc
Q 042817 234 ----IDMFSESWKNKSPVEKSCAIFKI----LSNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVV-FTTRYKEVCG 302 (922)
Q Consensus 234 ----l~~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Ii-vTtR~~~v~~ 302 (922)
+.+... .....++..+.+... ..++.-++|||+++.. ...+.+...+..-..+.++| +||....+..
T Consensus 92 hpDviEIdAa--s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlp 169 (700)
T PRK12323 92 FVDYIEMDAA--SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPV 169 (700)
T ss_pred CCcceEeccc--ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhh
Confidence 000000 011122222211111 1356679999999864 33445544443333455555 4554444433
Q ss_pred cc-cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHH
Q 042817 303 KM-EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITI 360 (922)
Q Consensus 303 ~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 360 (922)
.+ +....+.+..++.++..+.+.+.+...... ...+..+.|++.++|.|.-...+
T Consensus 170 TIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~---~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 170 TVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA---HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 22 223678999999999999888766433211 12345678999999999654433
No 76
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.29 E-value=1.2e-05 Score=79.03 Aligned_cols=171 Identities=19% Similarity=0.202 Sum_probs=88.9
Q ss_pred CcccchhhHHHHHHHHhc-----cCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHH
Q 042817 157 PRIIGQESIFDDAWRCMI-----EEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIG 231 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 231 (922)
.+|||.++.++.+.-++. ++...-+-+||++|+||||||.-+++.. ...|. +.+...-....++ ..++
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~---~~sg~~i~k~~dl-~~il 96 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFK---ITSGPAIEKAGDL-AAIL 96 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EE---EEECCC--SCHHH-HHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeE---eccchhhhhHHHH-HHHH
Confidence 478999999888655443 2356678899999999999999999998 44442 2222111111111 1122
Q ss_pred hhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCcc--c-------ccccccc-CCCCC-----------CCcE
Q 042817 232 KKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPV--D-------LTKVGVP-IPNST-----------NASK 290 (922)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~-------~~~l~~~-~~~~~-----------~gs~ 290 (922)
.. + +++-+|.+|++..-. + .++.... +-..+ +=+-
T Consensus 97 ~~-----------------------l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 97 TN-----------------------L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp HT--------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred Hh-----------------------c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 21 1 234456667765420 0 1111000 00011 1233
Q ss_pred EEEEcCChhhhcccccc--ceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHHH
Q 042817 291 VVFTTRYKEVCGKMEAH--KKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITIG 361 (922)
Q Consensus 291 IivTtR~~~v~~~~~~~--~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 361 (922)
|=.|||...+..-+... -..+++..+.+|-.++..+.+..-..+ -.++.+.+|+++|.|-|--..-+-
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~---i~~~~~~~Ia~rsrGtPRiAnrll 222 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIE---IDEDAAEEIARRSRGTPRIANRLL 222 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-E---E-HHHHHHHHHCTTTSHHHHHHHH
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCC---cCHHHHHHHHHhcCCChHHHHHHH
Confidence 44688876664433322 234899999999999998876443321 235788999999999996554433
No 77
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=5.8e-08 Score=96.57 Aligned_cols=182 Identities=21% Similarity=0.282 Sum_probs=118.0
Q ss_pred CCceEEEccCCCCCc--ccCccccCcccCCeeeeccCCcc-ccchhhccCCCCCEEeCCCCccccccCh-hhhCCCCCCC
Q 042817 562 PSLKVLNLSNNFSLR--EFPPGISKLISLQYLNLSSTGIR-VLPEELKALKDLSYLNMERTSFVRRIPR-QLISNFPLLR 637 (922)
Q Consensus 562 ~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~ 637 (922)
..|++|||++. .++ .+-..++.+.+|+.|.|.++.+. .+-..+..-.+|+.|++++|..+.+... -++.+++.|.
T Consensus 185 sRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 46999999998 555 24455778999999999999886 4555677789999999999987665432 2458899999
Q ss_pred EEEeecCCcccccccCcccccCccchHHHhhcCCCCceEEEEEechhHHHHHhhcccccCcceEEEEcCccccc--cccc
Q 042817 638 VLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKES--ESLR 715 (922)
Q Consensus 638 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~--~~~~ 715 (922)
.|+++.|...... ....+..+ -+ .|..|+|+++.... .++.
T Consensus 264 ~LNlsWc~l~~~~---------Vtv~V~hi--se--------------------------~l~~LNlsG~rrnl~~sh~~ 306 (419)
T KOG2120|consen 264 ELNLSWCFLFTEK---------VTVAVAHI--SE--------------------------TLTQLNLSGYRRNLQKSHLS 306 (419)
T ss_pred hcCchHhhccchh---------hhHHHhhh--ch--------------------------hhhhhhhhhhHhhhhhhHHH
Confidence 9999999733200 00000000 02 33334444433110 0111
Q ss_pred ccccccccccceeeecccCCcceeecccccccCCCCCccCCcccEEEEecCCCCCC--CchhhccCCCcEEEEeccc
Q 042817 716 TLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPETSRFHNLHRVGIVNCKSLKD--ITWLIFAPNLRILEISYCF 790 (922)
Q Consensus 716 ~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~c~ 790 (922)
.+ ...+|+|..|++++|.... .+.+. ....|+.|++|.++.|..+.. +-.+...|+|.+|++.+|-
T Consensus 307 tL-~~rcp~l~~LDLSD~v~l~--~~~~~------~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 307 TL-VRRCPNLVHLDLSDSVMLK--NDCFQ------EFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HH-HHhCCceeeeccccccccC--chHHH------HHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 11 4578999999999886544 11111 112388999999999976532 2236678999999999984
No 78
>PTZ00202 tuzin; Provisional
Probab=98.29 E-value=6.8e-06 Score=87.78 Aligned_cols=160 Identities=14% Similarity=0.117 Sum_probs=98.4
Q ss_pred CCCCcccchhhHHHHHHHHhcc---CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHH
Q 042817 154 PIEPRIIGQESIFDDAWRCMIE---EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDI 230 (922)
Q Consensus 154 ~~~~~~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 230 (922)
+..+.|+||+.+..++...|.+ +..+++.|+|++|+|||||++.+.... . + ..++++.. +..++++.|
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l---~--~-~qL~vNpr---g~eElLr~L 329 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE---G--M-PAVFVDVR---GTEDTLRSV 329 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC---C--c-eEEEECCC---CHHHHHHHH
Confidence 3456899999999999998864 234699999999999999999999765 1 1 13333333 679999999
Q ss_pred HhhccCCcccccCCChhhhHHHHHHHh-----c-CCcEEEEEccCCCccccccc---cccCCCCCCCcEEEEEcCChhhh
Q 042817 231 GKKIDMFSESWKNKSPVEKSCAIFKIL-----S-NKKFVLLLDDMWEPVDLTKV---GVPIPNSTNASKVVFTTRYKEVC 301 (922)
Q Consensus 231 ~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~-~kr~LlVlDdv~~~~~~~~l---~~~~~~~~~gs~IivTtR~~~v~ 301 (922)
+.+++.+.. ....++...|.+.+ . +++.+||+-= .+-..+..+ ...+.....-|+|++---.+...
T Consensus 330 L~ALGV~p~----~~k~dLLrqIqeaLl~~~~e~GrtPVLII~l-reg~~l~rvyne~v~la~drr~ch~v~evpleslt 404 (550)
T PTZ00202 330 VKALGVPNV----EACGDLLDFISEACRRAKKMNGETPLLVLKL-REGSSLQRVYNEVVALACDRRLCHVVIEVPLESLT 404 (550)
T ss_pred HHHcCCCCc----ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEe-cCCCcHHHHHHHHHHHHccchhheeeeeehHhhcc
Confidence 999997432 22234444444433 2 5666666642 121222211 01122223446677654433331
Q ss_pred cc---ccccceeecCCCCHHHHHHHHHHh
Q 042817 302 GK---MEAHKKLRVECLTADDAWMLFKVK 327 (922)
Q Consensus 302 ~~---~~~~~~~~l~~L~~~ea~~Lf~~~ 327 (922)
-. ...-.-|-+++++.++|.+.-.+.
T Consensus 405 ~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 405 IANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred hhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 11 111246788999999888776543
No 79
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.28 E-value=9.7e-06 Score=83.18 Aligned_cols=144 Identities=17% Similarity=0.236 Sum_probs=92.3
Q ss_pred ccchhhHHHH---HHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhcc
Q 042817 159 IIGQESIFDD---AWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (922)
Q Consensus 159 ~vGr~~~~~~---l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (922)
+||.+..+.+ +.+++..+.+.-+.+||++|+||||||+.+.... +.+- ..||..|....-..-.+.|.++-.
T Consensus 140 yvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts---k~~S--yrfvelSAt~a~t~dvR~ife~aq 214 (554)
T KOG2028|consen 140 YVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS---KKHS--YRFVELSATNAKTNDVRDIFEQAQ 214 (554)
T ss_pred hcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc---CCCc--eEEEEEeccccchHHHHHHHHHHH
Confidence 4555544322 3344555778889999999999999999999886 2221 557776655443333444443321
Q ss_pred CCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCc--cccccccccCCCCCCCcEEEE--EcCChhh---hccccccc
Q 042817 236 MFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVF--TTRYKEV---CGKMEAHK 308 (922)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iiv--TtR~~~v---~~~~~~~~ 308 (922)
. ...+..+|..|++|.|..- .+-+. .+|...+|+-++| ||.++.. +..+..-.
T Consensus 215 ~-----------------~~~l~krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~ 274 (554)
T KOG2028|consen 215 N-----------------EKSLTKRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCR 274 (554)
T ss_pred H-----------------HHhhhcceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccc
Confidence 1 1134578999999999642 22222 3566667876665 6666543 22334457
Q ss_pred eeecCCCCHHHHHHHHHHh
Q 042817 309 KLRVECLTADDAWMLFKVK 327 (922)
Q Consensus 309 ~~~l~~L~~~ea~~Lf~~~ 327 (922)
++.++.|+.++-..++.+.
T Consensus 275 VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 275 VFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred eeEeccCCHHHHHHHHHHH
Confidence 8999999999999988774
No 80
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.27 E-value=2e-07 Score=95.28 Aligned_cols=13 Identities=15% Similarity=0.429 Sum_probs=6.4
Q ss_pred ccceEEeeecccc
Q 042817 516 KGVKRMSLMNNKI 528 (922)
Q Consensus 516 ~~l~~l~l~~~~~ 528 (922)
..+..+++++|.+
T Consensus 30 ~s~~~l~lsgnt~ 42 (382)
T KOG1909|consen 30 DSLTKLDLSGNTF 42 (382)
T ss_pred CceEEEeccCCch
Confidence 3455555555543
No 81
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.26 E-value=7.7e-06 Score=84.11 Aligned_cols=170 Identities=11% Similarity=0.107 Sum_probs=99.3
Q ss_pred cccchh-hHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccC
Q 042817 158 RIIGQE-SIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDM 236 (922)
Q Consensus 158 ~~vGr~-~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 236 (922)
.++|.. ..+..+.++....+.+.+.|+|+.|+|||+||+++++... ..-..+.++++.....
T Consensus 24 f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~v~y~~~~~~~~-------------- 86 (235)
T PRK08084 24 FYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS---QRGRAVGYVPLDKRAW-------------- 86 (235)
T ss_pred cccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEHHHHhh--------------
Confidence 445632 3344444444444556899999999999999999999872 1223456666532100
Q ss_pred CcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCc---ccccccc-ccCCC-CCCC-cEEEEEcCChh---------hh
Q 042817 237 FSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEP---VDLTKVG-VPIPN-STNA-SKVVFTTRYKE---------VC 301 (922)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---~~~~~l~-~~~~~-~~~g-s~IivTtR~~~---------v~ 301 (922)
... .+.+.+.+ --+|++||+... ..|+... ..+.. ...| .++|+||+... ..
T Consensus 87 --------~~~----~~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~ 153 (235)
T PRK08084 87 --------FVP----EVLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLA 153 (235)
T ss_pred --------hhH----HHHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHH
Confidence 000 11112211 237999999653 2333221 11111 1123 36999998542 23
Q ss_pred ccccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHH
Q 042817 302 GKMEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITI 360 (922)
Q Consensus 302 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 360 (922)
..+....++++++++.++-.+++.+++...... --++...-|++.+.|..-++..+
T Consensus 154 SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~---l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 154 SRLDWGQIYKLQPLSDEEKLQALQLRARLRGFE---LPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHhCCceeeecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHhhcCCHHHHHHH
Confidence 344556789999999999999988766433222 22567777888888776555543
No 82
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.26 E-value=2.2e-06 Score=91.28 Aligned_cols=100 Identities=14% Similarity=0.158 Sum_probs=67.1
Q ss_pred HHHHHhcc-CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCC--CHHHHHHHHHhhccCCcccccCC
Q 042817 168 DAWRCMIE-EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDL--NLEKVQEDIGKKIDMFSESWKNK 244 (922)
Q Consensus 168 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~ 244 (922)
++++.+.. +.-....|+|++|+||||||++||+.. . ..+|+.++||.+++.. .+.++++.|...+-..+ .+..
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I-~-~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st--~d~~ 233 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSI-T-TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAST--FDEP 233 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHH-H-hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEEC--CCCC
Confidence 44555443 344578899999999999999999998 3 3389999999999887 78889998874332221 1111
Q ss_pred Chhh-----hHHHHHHH--hcCCcEEEEEccCCC
Q 042817 245 SPVE-----KSCAIFKI--LSNKKFVLLLDDMWE 271 (922)
Q Consensus 245 ~~~~-----~~~~l~~~--l~~kr~LlVlDdv~~ 271 (922)
.... .+-...++ -.+++++|++|++..
T Consensus 234 ~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 234 AERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 1111 11112222 257999999999854
No 83
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=2.2e-05 Score=88.84 Aligned_cols=192 Identities=13% Similarity=0.119 Sum_probs=107.6
Q ss_pred cccchhhHHHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCce-EEEEEeCCCCCHHHHHHHHHhhcc
Q 042817 158 RIIGQESIFDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDI-VIWVVVSKDLNLEKVQEDIGKKID 235 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~i~~~l~ 235 (922)
.++|.+..+..+...+..+++ +.+-++|+.|+||||+|+.+++..- -...... --+..+ ........|.....
T Consensus 22 dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln-c~~~~~~~~~~~~C----~~C~~C~~i~~~~h 96 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN-CSALITENTTIKTC----EQCTNCISFNNHNH 96 (507)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-CccccccCcCcCCC----CCChHHHHHhcCCC
Confidence 579999999998887776554 5788999999999999999998862 1111100 000000 00011111111000
Q ss_pred CCc---ccccCCChhhhHHHHHH----HhcCCcEEEEEccCCCc--cccccccccCCCCCCCcEEEE-EcCChhhhccc-
Q 042817 236 MFS---ESWKNKSPVEKSCAIFK----ILSNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVF-TTRYKEVCGKM- 304 (922)
Q Consensus 236 ~~~---~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iiv-TtR~~~v~~~~- 304 (922)
... +.......++....+.. -+.+++-++|+|+++.. ..++.+...+......+.+|+ ||+...+...+
T Consensus 97 ~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~ 176 (507)
T PRK06645 97 PDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATII 176 (507)
T ss_pred CcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHH
Confidence 000 00001111222111111 12356779999999864 345555544444344556554 55554554332
Q ss_pred cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHH
Q 042817 305 EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAI 357 (922)
Q Consensus 305 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 357 (922)
.....+++.+++.++....+...+...... -..+....|++.++|.+--+
T Consensus 177 SRc~~~ef~~ls~~el~~~L~~i~~~egi~---ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 177 SRCQRYDLRRLSFEEIFKLLEYITKQENLK---TDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred hcceEEEccCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 233578999999999999998887544311 12455677999999877444
No 84
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.24 E-value=1e-06 Score=69.26 Aligned_cols=56 Identities=38% Similarity=0.679 Sum_probs=29.4
Q ss_pred CceEEEccCCCCCcccCc-cccCcccCCeeeeccCCccccch-hhccCCCCCEEeCCCC
Q 042817 563 SLKVLNLSNNFSLREFPP-GISKLISLQYLNLSSTGIRVLPE-ELKALKDLSYLNMERT 619 (922)
Q Consensus 563 ~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~l~~~ 619 (922)
+|++|++++| .++.+|+ .+.++++|++|++++|.++.+|+ .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 4555555555 5555542 34555555555555555555543 3455555555555554
No 85
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=1.6e-05 Score=90.40 Aligned_cols=181 Identities=18% Similarity=0.187 Sum_probs=107.0
Q ss_pred CcccchhhHHHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhcc------------------CCCceEEEEEe
Q 042817 157 PRIIGQESIFDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQER------------------HDFDIVIWVVV 217 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~F~~~~wv~~ 217 (922)
..++|.+..++.+...+..++. +.+-++|+.|+||||+|+.+++...... ..|...++++.
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida 95 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA 95 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec
Confidence 3679999999999999877554 4577999999999999999998651100 01222223322
Q ss_pred CCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHH-HhcCCcEEEEEccCCCc--cccccccccCCCCCCCcEEE-E
Q 042817 218 SKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFK-ILSNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVV-F 293 (922)
Q Consensus 218 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Ii-v 293 (922)
.....+.++ .++.+.+.. -..+++-++|+|+++.. ...+.+...+......+.+| +
T Consensus 96 as~~gvd~i--------------------r~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~ 155 (546)
T PRK14957 96 ASRTGVEET--------------------KEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILA 155 (546)
T ss_pred ccccCHHHH--------------------HHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEE
Confidence 222222111 111111111 12356779999999754 33444444443333455555 4
Q ss_pred EcCChhhhcc-ccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchh-HHHHH
Q 042817 294 TTRYKEVCGK-MEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPL-AIITI 360 (922)
Q Consensus 294 TtR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 360 (922)
||....+... .+....+++.+++.++..+.+...+..... ...+.....|++.++|.+- |+..+
T Consensus 156 Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi---~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 156 TTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI---NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred ECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5544444322 233468899999999988888775543321 1224566788999998764 44444
No 86
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.23 E-value=8.8e-06 Score=96.03 Aligned_cols=168 Identities=20% Similarity=0.252 Sum_probs=96.5
Q ss_pred cccchhhHHH---HHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhc
Q 042817 158 RIIGQESIFD---DAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKI 234 (922)
Q Consensus 158 ~~vGr~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 234 (922)
.|+|++..+. .+...+..+....+.++|++|+||||+|+.+++.. ...|. .++.+. ..+.+
T Consensus 29 d~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~---~lna~~-~~i~d--------- 92 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT---RAHFS---SLNAVL-AGVKD--------- 92 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh---cCcce---eehhhh-hhhHH---------
Confidence 5789988774 45566666677778899999999999999999876 34442 111110 01111
Q ss_pred cCCcccccCCChhhhHHHHHHHh--cCCcEEEEEccCCCc--cccccccccCCCCCCCcEEEEE--cCChh--hhc-ccc
Q 042817 235 DMFSESWKNKSPVEKSCAIFKIL--SNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVFT--TRYKE--VCG-KME 305 (922)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivT--tR~~~--v~~-~~~ 305 (922)
..+......+.+ .+++.+|||||++.. .+.+.+...+ ..|+.++|+ |.+.. +.. ..+
T Consensus 93 -----------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~S 158 (725)
T PRK13341 93 -----------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVS 158 (725)
T ss_pred -----------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhc
Confidence 111111222222 246789999999753 3334443322 235555553 33321 111 112
Q ss_pred ccceeecCCCCHHHHHHHHHHhhCCCC----CCCCCChhHHHHHHHHHhCCchh
Q 042817 306 AHKKLRVECLTADDAWMLFKVKVGEDT----IDSHPEIPKHAQLVAKECGGLPL 355 (922)
Q Consensus 306 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~----~~~~~~~~~~~~~i~~~c~glPL 355 (922)
....+.+++++.++...++.+.+.... .....-.++....|++.+.|..-
T Consensus 159 R~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 159 RSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred cccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 245789999999999999987654100 00111224556778888877643
No 87
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=2.2e-05 Score=88.40 Aligned_cols=184 Identities=14% Similarity=0.192 Sum_probs=104.6
Q ss_pred CcccchhhHHHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhccCC------------------CceEEEEEe
Q 042817 157 PRIIGQESIFDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQERHD------------------FDIVIWVVV 217 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~------------------F~~~~wv~~ 217 (922)
..+||.+..+..+...+..+.. +.+-++|++|+||||+|+.+++........ +..++.++.
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~a 93 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDA 93 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeC
Confidence 3689999988888888877665 467899999999999999999876211000 001222222
Q ss_pred CCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCc--cccccccccCCCCCCCcEEEEEc
Q 042817 218 SKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVFTT 295 (922)
Q Consensus 218 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTt 295 (922)
+...++..+ ++|.+.... .-..+++-++|+|+++.. ...+.+...+........+|++|
T Consensus 94 a~~~gid~i-R~i~~~~~~------------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilat 154 (472)
T PRK14962 94 ASNRGIDEI-RKIRDAVGY------------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLAT 154 (472)
T ss_pred cccCCHHHH-HHHHHHHhh------------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 222222211 111111110 002245679999999753 23334433333323334444444
Q ss_pred CC-hhhhccc-cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCc-hhHHHHHHh
Q 042817 296 RY-KEVCGKM-EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGL-PLAIITIGR 362 (922)
Q Consensus 296 R~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~g~ 362 (922)
.+ ..+...+ .....+.+.+++.++....+...+...... --.+....|++.++|. +.|+..+-.
T Consensus 155 tn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~---i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 155 TNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE---IDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred CChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 43 3332221 234578999999999988888876433211 1245677888878654 566655544
No 88
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=1.7e-05 Score=87.71 Aligned_cols=194 Identities=11% Similarity=0.080 Sum_probs=107.5
Q ss_pred CcccchhhHHHHHHHHhccCCee-EEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhcc
Q 042817 157 PRIIGQESIFDDAWRCMIEEQVG-IIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (922)
..+||.+..+..+..++..+.+. .+.++|+.|+||||+|+.+++... ...... ...+....+-..+...+...+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln--ce~~~~--~~pCg~C~sC~~i~~g~~~dvi 93 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN--CENPIG--NEPCNECTSCLEITKGISSDVL 93 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC--cccccC--ccccCCCcHHHHHHccCCccce
Confidence 36799999999999998877654 688999999999999999998862 111100 0011111111111111100000
Q ss_pred -CCc-ccccCCChhhhHHHHHH-HhcCCcEEEEEccCCCc--cccccccccCCCCCCCcEEEE-EcCChhhhccc-cccc
Q 042817 236 -MFS-ESWKNKSPVEKSCAIFK-ILSNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVF-TTRYKEVCGKM-EAHK 308 (922)
Q Consensus 236 -~~~-~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iiv-TtR~~~v~~~~-~~~~ 308 (922)
... ......+..++.+.+.. -..++.-++|+|+++.. ..++.+...+........+|. ||....+.... ....
T Consensus 94 EIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq 173 (484)
T PRK14956 94 EIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQ 173 (484)
T ss_pred eechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhh
Confidence 000 00000011111112211 12356679999999764 345555444433233445444 44444443222 2335
Q ss_pred eeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHH
Q 042817 309 KLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAI 357 (922)
Q Consensus 309 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 357 (922)
.|.+.+++.++..+.+.+.+...... -..+....|++.++|.+--+
T Consensus 174 ~~~f~~ls~~~i~~~L~~i~~~Egi~---~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 174 DFIFKKVPLSVLQDYSEKLCKIENVQ---YDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred eeeecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCChHHHH
Confidence 79999999999988888776443311 22556788999999998433
No 89
>PRK09087 hypothetical protein; Validated
Probab=98.18 E-value=1.9e-05 Score=80.37 Aligned_cols=142 Identities=15% Similarity=0.121 Sum_probs=86.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKI 256 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 256 (922)
..+.+.|+|+.|+|||+|++.+++.. .. .+++.. .+...+.. .
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~---~~-----~~i~~~------~~~~~~~~-----------------------~ 85 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS---DA-----LLIHPN------EIGSDAAN-----------------------A 85 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc---CC-----EEecHH------HcchHHHH-----------------------h
Confidence 34679999999999999999988765 11 133221 11111111 1
Q ss_pred hcCCcEEEEEccCCCcc-ccccccccCCC-CCCCcEEEEEcCC---------hhhhccccccceeecCCCCHHHHHHHHH
Q 042817 257 LSNKKFVLLLDDMWEPV-DLTKVGVPIPN-STNASKVVFTTRY---------KEVCGKMEAHKKLRVECLTADDAWMLFK 325 (922)
Q Consensus 257 l~~kr~LlVlDdv~~~~-~~~~l~~~~~~-~~~gs~IivTtR~---------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~ 325 (922)
+.+ -+|++||+.... +-+.+...+.. ...|..||+|++. ++....+.....+++++++.++-.+++.
T Consensus 86 ~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 86 AAE--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred hhc--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 111 278889996431 11112111111 1236679998874 2334444566789999999999999999
Q ss_pred HhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHH
Q 042817 326 VKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITI 360 (922)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 360 (922)
+.+...... --++...-|++.+.|..-++..+
T Consensus 164 ~~~~~~~~~---l~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 164 KLFADRQLY---VDPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHHHHcCCC---CCHHHHHHHHHHhhhhHHHHHHH
Confidence 887543322 22567788888888877666643
No 90
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.16 E-value=1.1e-06 Score=89.92 Aligned_cols=236 Identities=19% Similarity=0.191 Sum_probs=147.5
Q ss_pred cCCCCceEEEeccCccccc----chhhhccCCCceEEEccCCCCC----cccCcc-------ccCcccCCeeeeccCCcc
Q 042817 535 ATCPHLLTLFLQNNRLSNI----TANFFQFMPSLKVLNLSNNFSL----REFPPG-------ISKLISLQYLNLSSTGIR 599 (922)
Q Consensus 535 ~~~~~L~~L~l~~~~l~~~----~~~~~~~l~~L~~L~L~~~~~l----~~lp~~-------i~~L~~L~~L~L~~~~i~ 599 (922)
.....+..+++++|.+..- ....+.+.+.|+..++++- .. .++|+. +-.+++|++||||.|-+.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 4567788899999865422 2234667778888888875 22 234443 345668999999988654
Q ss_pred -----ccchhhccCCCCCEEeCCCCccccccChh-------------hhCCCCCCCEEEeecCCcccccccCcccccCcc
Q 042817 600 -----VLPEELKALKDLSYLNMERTSFVRRIPRQ-------------LISNFPLLRVLRMLDCGALERAEHGSVLFNGGE 661 (922)
Q Consensus 600 -----~lp~~l~~l~~L~~L~l~~~~~l~~lp~~-------------~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 661 (922)
.+-.-+.++..|++|+|.+|.. +...-. .+..-++|+++....|..-. ..-.
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Gl-g~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen---------~ga~ 175 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGL-GPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN---------GGAT 175 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCC-ChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc---------ccHH
Confidence 2333466788899999988863 221111 13455678888877765221 1222
Q ss_pred chHHHhhcCCCCceEEEEEechh--HHHHHhhcccccCcceEEEEcCccccccccccc--ccccccccceeeecccCCcc
Q 042817 662 ILIEELLCLNHLSVLSVCLESDQ--ALRKFLSSYRLKSSTQTLRLRKLKKESESLRTL--SLTDMEKLRNLFIADSSFEK 737 (922)
Q Consensus 662 ~~~~~L~~L~~L~~L~l~~~~~~--~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l--~l~~~~~L~~L~i~~~~~~~ 737 (922)
.....++..+.|+.+.+..++.. ....+......+++|+.|+|.++......-..+ .++.+++|+.|++++|.+..
T Consensus 176 ~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 176 ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccc
Confidence 34566677788888888765542 233444455667888888888876433222222 26777888999988887655
Q ss_pred ee----ecccccccCCCCCccCCcccEEEEecCCCCCC------CchhhccCCCcEEEEeccc
Q 042817 738 LQ----IDCVGEIRKTPETSRFHNLHRVGIVNCKSLKD------ITWLIFAPNLRILEISYCF 790 (922)
Q Consensus 738 l~----~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~------l~~l~~l~~L~~L~L~~c~ 790 (922)
-. .+.+. ..+|+|+.|.+.+|. ++. ...+...|.|+.|+|++|.
T Consensus 256 ~Ga~a~~~al~--------~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 256 EGAIAFVDALK--------ESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred ccHHHHHHHHh--------ccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 21 11221 237888999888873 221 0134557889999998875
No 91
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=2e-05 Score=90.49 Aligned_cols=178 Identities=15% Similarity=0.192 Sum_probs=104.6
Q ss_pred CcccchhhHHHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhccCC-------------------CceEEEEE
Q 042817 157 PRIIGQESIFDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQERHD-------------------FDIVIWVV 216 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-------------------F~~~~wv~ 216 (922)
..+||.+..++.|..++..+++ +.+-++|+.|+||||+|+.+++..- -... |.-++.++
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln-C~~~~~~~pCg~C~sCr~i~~g~~~DvlEid 94 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN-CENAQHGEPCGVCQSCTQIDAGRYVDLLEID 94 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc-ccCCCCCCCCcccHHHHHHhccCccceEEEe
Confidence 3689999999999999987654 4688999999999999999988751 1110 10111222
Q ss_pred eCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHH-HhcCCcEEEEEccCCCccc--cccccccCCCCCCCcEEEE
Q 042817 217 VSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFK-ILSNKKFVLLLDDMWEPVD--LTKVGVPIPNSTNASKVVF 293 (922)
Q Consensus 217 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~gs~Iiv 293 (922)
.+....+..+ +++++ .... -..+++-++|+|++..... ...+...+......+++|+
T Consensus 95 aAs~~gVd~I-Relle-------------------~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fIL 154 (709)
T PRK08691 95 AASNTGIDNI-REVLE-------------------NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFIL 154 (709)
T ss_pred ccccCCHHHH-HHHHH-------------------HHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEE
Confidence 1111111111 11111 1000 0125667999999976432 3333333322234556676
Q ss_pred EcCChh-hhcc-ccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHH
Q 042817 294 TTRYKE-VCGK-MEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAII 358 (922)
Q Consensus 294 TtR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 358 (922)
+|.+.. +... .+....+.+.+++.++....+.+.+...... -..+....|++.++|.+.-+.
T Consensus 155 aTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~---id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 155 ATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA---YEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred EeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC---cCHHHHHHHHHHhCCCHHHHH
Confidence 665433 3211 1223467888999999999888776543321 124567889999999885444
No 92
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.16 E-value=1.6e-05 Score=87.91 Aligned_cols=170 Identities=16% Similarity=0.216 Sum_probs=98.9
Q ss_pred CcccchhhHHHHHHHHhcc-------------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCH
Q 042817 157 PRIIGQESIFDDAWRCMIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNL 223 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 223 (922)
..+.|++..++++.+.+.. ...+-+.++|++|+|||++|+++++.. ...| +.+..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~-----~~v~~---- 189 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVVG---- 189 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCE-----Eecch----
Confidence 3689999999999887632 123458899999999999999999987 3333 22211
Q ss_pred HHHHHHHHhhccCCcccccCCChhhhHHHHHHHh-cCCcEEEEEccCCCcc----------------ccccccccCC--C
Q 042817 224 EKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKIL-SNKKFVLLLDDMWEPV----------------DLTKVGVPIP--N 284 (922)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~----------------~~~~l~~~~~--~ 284 (922)
..+.... .+ ........+.+.. ...+.+|+|||++... .+..+...+. .
T Consensus 190 ~~l~~~~---~g---------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 SELVRKY---IG---------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred HHHHHHh---hh---------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 1111110 00 0111122222222 3467899999997531 0111111111 1
Q ss_pred CCCCcEEEEEcCChhhh-----ccccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCch
Q 042817 285 STNASKVVFTTRYKEVC-----GKMEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLP 354 (922)
Q Consensus 285 ~~~gs~IivTtR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 354 (922)
...+.+||.||...+.. .....+..+.++..+.++..++|...+.......... ...+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 12456788888765432 1112245789999999999999988775543222222 456777777664
No 93
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=4.6e-05 Score=83.81 Aligned_cols=185 Identities=9% Similarity=0.046 Sum_probs=103.0
Q ss_pred CcccchhhHHHHHHHHhccCC----------eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHH
Q 042817 157 PRIIGQESIFDDAWRCMIEEQ----------VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKV 226 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~----------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~ 226 (922)
..++|.+..++.+...+..+. .+-+-++|++|+|||++|+.+++..-. ... . + ..++.-..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c-~~~--~--~----~~Cg~C~~ 75 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQC-TDP--D--E----PGCGECRA 75 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC-CCC--C--C----CCCCCCHH
Confidence 367999999999999987643 356889999999999999999886511 100 0 0 00011111
Q ss_pred HHHHHhhccCCc-----ccccCCChhhhHHHHHHHh-----cCCcEEEEEccCCCcc--ccccccccCCCCCCCcEEEEE
Q 042817 227 QEDIGKKIDMFS-----ESWKNKSPVEKSCAIFKIL-----SNKKFVLLLDDMWEPV--DLTKVGVPIPNSTNASKVVFT 294 (922)
Q Consensus 227 ~~~i~~~l~~~~-----~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivT 294 (922)
-+.+.... .+. ........++. +.+.+.+ .+++-++|+|+++... ....+...+.....+..+|++
T Consensus 76 C~~~~~~~-hpD~~~i~~~~~~i~i~~i-R~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~ 153 (394)
T PRK07940 76 CRTVLAGT-HPDVRVVAPEGLSIGVDEV-RELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLC 153 (394)
T ss_pred HHHHhcCC-CCCEEEeccccccCCHHHH-HHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEE
Confidence 11111000 000 00000111111 1222222 2455688889997642 223333333332345556665
Q ss_pred cCCh-hhhccc-cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHH
Q 042817 295 TRYK-EVCGKM-EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITI 360 (922)
Q Consensus 295 tR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 360 (922)
|.+. .+...+ +....+.+.+++.++..+.+....+. ..+.+..+++.++|.|.....+
T Consensus 154 a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~--------~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 154 APSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV--------DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred ECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC--------CHHHHHHHHHHcCCCHHHHHHH
Confidence 5553 443222 23468899999999999888743211 1355788999999999755444
No 94
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.14 E-value=5.1e-05 Score=84.13 Aligned_cols=181 Identities=14% Similarity=0.209 Sum_probs=107.6
Q ss_pred CcccchhhHHHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhc-c------------------CCCceEEEEE
Q 042817 157 PRIIGQESIFDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQE-R------------------HDFDIVIWVV 216 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-~------------------~~F~~~~wv~ 216 (922)
..++|.+..++.+.+.+..+.. +.+-++|++|+||||+|+.++...... . .+++. ++++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~ 92 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEID 92 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEee
Confidence 3679999999999999877654 467899999999999999998886211 0 12222 2222
Q ss_pred eCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCc--cccccccccCCCCCCCcEEEEE
Q 042817 217 VSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVFT 294 (922)
Q Consensus 217 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivT 294 (922)
.+....... .+++...+... -..+++-++|+|+++.. .....+...+......+.+|++
T Consensus 93 ~~~~~~~~~-~~~l~~~~~~~------------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~ 153 (355)
T TIGR02397 93 AASNNGVDD-IREILDNVKYA------------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILA 153 (355)
T ss_pred ccccCCHHH-HHHHHHHHhcC------------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEE
Confidence 221111111 11122211100 01245568999998654 2344444444333345666677
Q ss_pred cCChh-hhcc-ccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHH
Q 042817 295 TRYKE-VCGK-MEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITI 360 (922)
Q Consensus 295 tR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 360 (922)
|.+.. +... ......+++.++++++..+.+...+...... --++.+..+++.++|.|..+...
T Consensus 154 ~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~---i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 154 TTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK---IEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred eCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCChHHHHHH
Confidence 65543 2221 1223578899999999988888766433211 12467788999999988665543
No 95
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.14 E-value=5.6e-05 Score=75.15 Aligned_cols=159 Identities=15% Similarity=0.177 Sum_probs=91.9
Q ss_pred HHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhcc--------------------CCCceEEEEEeC-CCCCHHH
Q 042817 168 DAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQER--------------------HDFDIVIWVVVS-KDLNLEK 225 (922)
Q Consensus 168 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~~F~~~~wv~~s-~~~~~~~ 225 (922)
.+.+.+..++. ..+-++|+.|+||||+|+.+.+... -. .+.|. .++... .....+.
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~-~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~ 80 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALL-CEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQ 80 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHH
Confidence 44555555555 5788999999999999999988862 11 11121 122111 1111111
Q ss_pred HHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCc--cccccccccCCCCCCCcEEEEEcCCh-hhhc
Q 042817 226 VQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVFTTRYK-EVCG 302 (922)
Q Consensus 226 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~~-~v~~ 302 (922)
+ +++.+.+... -..+.+-++|+||++.. ...+.+...+......+.+|++|++. .+..
T Consensus 81 i-~~i~~~~~~~------------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~ 141 (188)
T TIGR00678 81 V-RELVEFLSRT------------------PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLP 141 (188)
T ss_pred H-HHHHHHHccC------------------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChH
Confidence 1 1111111110 01245668999999764 23444444444434456677666644 2222
Q ss_pred cc-cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhH
Q 042817 303 KM-EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLA 356 (922)
Q Consensus 303 ~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 356 (922)
.. .....+.+.+++.++..+.+... + . ..+.+..|++.++|.|..
T Consensus 142 ~i~sr~~~~~~~~~~~~~~~~~l~~~-g---i-----~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 142 TIRSRCQVLPFPPLSEEALLQWLIRQ-G---I-----SEEAAELLLALAGGSPGA 187 (188)
T ss_pred HHHhhcEEeeCCCCCHHHHHHHHHHc-C---C-----CHHHHHHHHHHcCCCccc
Confidence 11 23358899999999998888776 1 1 146788999999998853
No 96
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=3.5e-05 Score=86.38 Aligned_cols=179 Identities=16% Similarity=0.187 Sum_probs=108.1
Q ss_pred CcccchhhHHHHHHHHhccCCee-EEEEEcCCCCcHHHHHHHHHHHhhhcc------------------CCCceEEEEEe
Q 042817 157 PRIIGQESIFDDAWRCMIEEQVG-IIGLYGAGGVGKTTLLKQLNNKLCQER------------------HDFDIVIWVVV 217 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~F~~~~wv~~ 217 (922)
.++||.+..++.+.+.+..+.+. .+-++|+.|+||||+|+.++...-... ..+.-++.++.
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eida 92 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDA 92 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEec
Confidence 36799999999998888776654 788999999999999999987531000 11112333443
Q ss_pred CCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCc--cccccccccCCCCCCCcEEEEEc
Q 042817 218 SKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVFTT 295 (922)
Q Consensus 218 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTt 295 (922)
+...++.++. +|.+..... -..+++-++|+|+++.. ...+.+...+..-.+.+++|++|
T Consensus 93 as~~~vddIR-~Iie~~~~~------------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 93 ASNTSVDDIK-VILENSCYL------------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred ccCCCHHHHH-HHHHHHHhc------------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 3333333322 121111100 01245668999999754 23444444443334456666555
Q ss_pred C-Chhhhccc-cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHH
Q 042817 296 R-YKEVCGKM-EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAI 357 (922)
Q Consensus 296 R-~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 357 (922)
. ...+...+ +....+++.+++.++..+.+...+...... -.++....|++.++|.+-.+
T Consensus 154 te~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~---i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 154 TEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE---HDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred CChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 4 34443222 234678999999999999998877544321 12456678899999877543
No 97
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=3.9e-05 Score=88.51 Aligned_cols=195 Identities=13% Similarity=0.169 Sum_probs=107.4
Q ss_pred CcccchhhHHHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhcc-CCCceEEEEEeCCCCCHHHHHHHHHhhc
Q 042817 157 PRIIGQESIFDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQER-HDFDIVIWVVVSKDLNLEKVQEDIGKKI 234 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~~~wv~~s~~~~~~~~~~~i~~~l 234 (922)
.++||.+..++.|.+++..+.+ ..+-++|+.|+||||+|+.+++..-... ....+.-. ..++....-+.|...-
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~~g~ 91 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDIDSGR 91 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHHcCC
Confidence 3679999999999999987655 5678999999999999999987761100 00000000 0111112222221100
Q ss_pred cCCc---ccccCCChhhhHHHHHHHh-----cCCcEEEEEccCCCc--cccccccccCCCCCCCcEEEEEcCC-hhhhcc
Q 042817 235 DMFS---ESWKNKSPVEKSCAIFKIL-----SNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVFTTRY-KEVCGK 303 (922)
Q Consensus 235 ~~~~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~-~~v~~~ 303 (922)
.... +.......++.. .+.+.. .++.-++|||+|+.. ...+.+...+..-....++|++|.+ ..+...
T Consensus 92 h~D~~eldaas~~~Vd~iR-eli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~T 170 (618)
T PRK14951 92 FVDYTELDAASNRGVDEVQ-QLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVT 170 (618)
T ss_pred CCceeecCcccccCHHHHH-HHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHH
Confidence 0000 000001111111 111211 234558999999864 3344444444333345566655543 334322
Q ss_pred -ccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHH
Q 042817 304 -MEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIIT 359 (922)
Q Consensus 304 -~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 359 (922)
.+....+++.+++.++..+.+...+...... -..+....|++.++|.+--+..
T Consensus 171 IlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~---ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 171 VLSRCLQFNLRPMAPETVLEHLTQVLAAENVP---AEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred HHHhceeeecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 2334688999999999999888776443321 1245678889999988754443
No 98
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.13 E-value=3.1e-05 Score=88.17 Aligned_cols=193 Identities=16% Similarity=0.131 Sum_probs=105.2
Q ss_pred CcccchhhHHHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhcc
Q 042817 157 PRIIGQESIFDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (922)
..++|++..++.+.+.+..+.+ +.+-++|+.|+||||+|+.+++..-. .. |... ..++.....+.+.....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C-~~------~~~~-~~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINC-LN------PKDG-DCCNSCSVCESINTNQS 87 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC-CC------CCCC-CCCcccHHHHHHHcCCC
Confidence 3679999999999999876544 46889999999999999999988621 11 1110 01111112222211110
Q ss_pred CCccccc---CCChhhhHHHHHHHh-----cCCcEEEEEccCCCc--cccccccccCCCCCCCcEEEEEcC-Chhhhcc-
Q 042817 236 MFSESWK---NKSPVEKSCAIFKIL-----SNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVFTTR-YKEVCGK- 303 (922)
Q Consensus 236 ~~~~~~~---~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR-~~~v~~~- 303 (922)
..-.... ....++. +.+.+.. .+++-++|+|+++.. ..+..+...+......+.+|++|. ...+...
T Consensus 88 ~DiieIdaas~igVd~I-ReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI 166 (605)
T PRK05896 88 VDIVELDAASNNGVDEI-RNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTI 166 (605)
T ss_pred CceEEeccccccCHHHH-HHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHH
Confidence 0000000 0111111 1111111 234447999999763 334444443333233455555554 3333222
Q ss_pred ccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchh-HHHHHH
Q 042817 304 MEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPL-AIITIG 361 (922)
Q Consensus 304 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~g 361 (922)
.+....+++.++++++....+...+...... --.+.+..+++.++|.+- |+..+-
T Consensus 167 ~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~---Is~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 167 ISRCQRYNFKKLNNSELQELLKSIAKKEKIK---IEDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred HhhhhhcccCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 2234578999999999998888766433211 124567889999999664 444333
No 99
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.11 E-value=2.8e-05 Score=89.84 Aligned_cols=189 Identities=14% Similarity=0.175 Sum_probs=107.6
Q ss_pred CcccchhhHHHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhcc
Q 042817 157 PRIIGQESIFDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (922)
..+||.+..++.+...+..+.+ ..+-++|+.|+||||+|+.+++..-.. ..+. ...+......+.|...-.
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~-~~~~-------~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE-TGIT-------ATPCGECDNCREIEQGRF 87 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc-cCCC-------CCCCCCCHHHHHHHcCCC
Confidence 3689999999999999987655 456799999999999999998886211 1000 011111122222221100
Q ss_pred -----CCcccccCCChhhhHHHHHHH-----hcCCcEEEEEccCCCc--cccccccccCCCCCCCcEEEEEcCC-hhhhc
Q 042817 236 -----MFSESWKNKSPVEKSCAIFKI-----LSNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVFTTRY-KEVCG 302 (922)
Q Consensus 236 -----~~~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~-~~v~~ 302 (922)
.... .....++. ..+.+. ..+++-++|+|+++.. ...+.+...+..-....++|.+|.+ ..+..
T Consensus 88 ~D~ieidaa--s~~~Vddi-R~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~ 164 (647)
T PRK07994 88 VDLIEIDAA--SRTKVEDT-RELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (647)
T ss_pred CCceeeccc--ccCCHHHH-HHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccch
Confidence 0000 00111111 112221 2456779999999764 3344443333332344555555544 44432
Q ss_pred c-ccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHH
Q 042817 303 K-MEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIIT 359 (922)
Q Consensus 303 ~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 359 (922)
. .+....|.+.+++.++....+...+..... .........|++.++|.+--+..
T Consensus 165 TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i---~~e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 165 TILSRCLQFHLKALDVEQIRQQLEHILQAEQI---PFEPRALQLLARAADGSMRDALS 219 (647)
T ss_pred HHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 2 223468999999999999988876533221 11245567899999998864443
No 100
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=8.5e-05 Score=81.04 Aligned_cols=195 Identities=12% Similarity=-0.001 Sum_probs=109.8
Q ss_pred CcccchhhHHHHHHHHhccCCee-EEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEE---EEeCCCCCHHHHHHHHHh
Q 042817 157 PRIIGQESIFDDAWRCMIEEQVG-IIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIW---VVVSKDLNLEKVQEDIGK 232 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~w---v~~s~~~~~~~~~~~i~~ 232 (922)
..++|.+..++.+.+.+..+.+. .+-++|+.|+||+|+|..+++..-. ......... ...-........-+.|..
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc-~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~ 97 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLA-TPPPGGDGAVPPPTSLAIDPDHPVARRIAA 97 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhC-CCCCCCCccccccccccCCCCChHHHHHHc
Confidence 46899999999999999876554 6889999999999999999887621 111000000 000000000111222211
Q ss_pred hccCCc---------ccc----cCCChhhhHHHHHHHhc-----CCcEEEEEccCCCc--cccccccccCCCCCCCcEEE
Q 042817 233 KIDMFS---------ESW----KNKSPVEKSCAIFKILS-----NKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVV 292 (922)
Q Consensus 233 ~l~~~~---------~~~----~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Ii 292 (922)
.- .++ +.. .....++ +..+.+.+. +.+.++|+||++.. .....+...+..-..++.+|
T Consensus 98 ~~-HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~I 175 (365)
T PRK07471 98 GA-HGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFL 175 (365)
T ss_pred cC-CCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 10 000 000 0111222 333444442 46779999999754 23334433333323456667
Q ss_pred EEcCChh-hhcc-ccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHHH
Q 042817 293 FTTRYKE-VCGK-MEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITIG 361 (922)
Q Consensus 293 vTtR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 361 (922)
++|.+.. +... .+....+.+.+++.++..+++........ ......+++.++|.|.....+.
T Consensus 176 L~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-------~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 176 LVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-------DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-------HHHHHHHHHHcCCCHHHHHHHh
Confidence 6666553 3222 22346889999999999999987542211 1223678999999998665543
No 101
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=3.6e-05 Score=87.77 Aligned_cols=180 Identities=15% Similarity=0.159 Sum_probs=106.0
Q ss_pred CcccchhhHHHHHHHHhccCCee-EEEEEcCCCCcHHHHHHHHHHHhhhcc------------------CCCceEEEEEe
Q 042817 157 PRIIGQESIFDDAWRCMIEEQVG-IIGLYGAGGVGKTTLLKQLNNKLCQER------------------HDFDIVIWVVV 217 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~F~~~~wv~~ 217 (922)
.++||.+..++.+.+++..+.+. .+-++|+.|+||||+|+.+++..-... +.|.-++.++.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eida 95 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDA 95 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcc
Confidence 36899999999999999876554 578999999999999999998762100 11112333332
Q ss_pred CCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCc--cccccccccCCCCCCCcEEEEEc
Q 042817 218 SKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVFTT 295 (922)
Q Consensus 218 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTt 295 (922)
+....+.++ +++.+.+... -..++.-++|+|+|+.. .....+...+..-...+++|++|
T Consensus 96 as~~~v~~i-R~l~~~~~~~------------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 96 ASRTKVEDT-RELLDNIPYA------------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred cccCCHHHH-HHHHHHHhhc------------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEE
Confidence 222222222 1222211110 01346668999999764 33444444443333456666655
Q ss_pred CC-hhhhcc-ccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHH
Q 042817 296 RY-KEVCGK-MEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAII 358 (922)
Q Consensus 296 R~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 358 (922)
.+ ..+... .+....+++.+++.++....+...+...... -..+....|++.++|.+--+.
T Consensus 157 td~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~---~~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 157 TDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE---FENAALDLLARAANGSVRDAL 218 (509)
T ss_pred CChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCcHHHHH
Confidence 44 333222 1223568899999998887776665433211 123456778889998875444
No 102
>PLN03150 hypothetical protein; Provisional
Probab=98.09 E-value=6.5e-06 Score=97.23 Aligned_cols=110 Identities=24% Similarity=0.297 Sum_probs=91.1
Q ss_pred cceEEeeeccccccccc--ccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeeec
Q 042817 517 GVKRMSLMNNKIRNLSE--PATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLS 594 (922)
Q Consensus 517 ~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~ 594 (922)
.++.|++.+|.+....+ ...+++|+.|+|++|.+....+..++.+++|++|+|++|.....+|+.+++|++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47888999988875322 3678999999999999986666669999999999999995555899999999999999999
Q ss_pred cCCcc-ccchhhccC-CCCCEEeCCCCccccccC
Q 042817 595 STGIR-VLPEELKAL-KDLSYLNMERTSFVRRIP 626 (922)
Q Consensus 595 ~~~i~-~lp~~l~~l-~~L~~L~l~~~~~l~~lp 626 (922)
+|.++ .+|..++.+ .++..+++.+|..+...|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99988 889888764 577889999887655444
No 103
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.08 E-value=4.2e-05 Score=82.91 Aligned_cols=196 Identities=11% Similarity=0.058 Sum_probs=111.4
Q ss_pred CcccchhhHHHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhcc-CCCceEEEEEeCCCCCHHHHHHHHHhh-
Q 042817 157 PRIIGQESIFDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQER-HDFDIVIWVVVSKDLNLEKVQEDIGKK- 233 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~~~wv~~s~~~~~~~~~~~i~~~- 233 (922)
..++|.++..+.+...+..+.. ..+-|+|+.|+||||+|+.+++..-... ..+... .....+......+.|...
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~~ 99 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQGA 99 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcCC
Confidence 4689999999999999987654 4688999999999999999998872100 001111 011111122233344322
Q ss_pred ------ccCCcccc-----cCCChhhhHHHHHHHhc-----CCcEEEEEccCCCcc--ccccccccCCCCCCCcE-EEEE
Q 042817 234 ------IDMFSESW-----KNKSPVEKSCAIFKILS-----NKKFVLLLDDMWEPV--DLTKVGVPIPNSTNASK-VVFT 294 (922)
Q Consensus 234 ------l~~~~~~~-----~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~-IivT 294 (922)
+..+.+.. .....++ +..+.+++. +++-++|+|+++... ..+.+...+..-..+.. |++|
T Consensus 100 hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 100 HPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILIS 178 (351)
T ss_pred CCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEE
Confidence 11110000 0111222 234444443 467799999998642 23333333322223344 4455
Q ss_pred cCChhhhccc-cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHHH
Q 042817 295 TRYKEVCGKM-EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITIG 361 (922)
Q Consensus 295 tR~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 361 (922)
++-..+.... +....+.+.+++.++..+++....... . ...+....|++.++|.|.....+.
T Consensus 179 ~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~----~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 179 HSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ----G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc----C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4443333222 223589999999999999998743211 1 124557789999999998665443
No 104
>PRK05642 DNA replication initiation factor; Validated
Probab=98.06 E-value=3.6e-05 Score=79.06 Aligned_cols=150 Identities=11% Similarity=0.213 Sum_probs=90.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHHhc
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILS 258 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 258 (922)
..+.|+|..|+|||.||+++++.. ..+ -..++|++... +... ...+.+.++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~-~~~--~~~v~y~~~~~------~~~~--------------------~~~~~~~~~ 96 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRF-EQR--GEPAVYLPLAE------LLDR--------------------GPELLDNLE 96 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-HhC--CCcEEEeeHHH------HHhh--------------------hHHHHHhhh
Confidence 578999999999999999999876 212 23567776432 1110 012233333
Q ss_pred CCcEEEEEccCCCc---ccccc-ccccCCC-CCCCcEEEEEcCChhh---------hccccccceeecCCCCHHHHHHHH
Q 042817 259 NKKFVLLLDDMWEP---VDLTK-VGVPIPN-STNASKVVFTTRYKEV---------CGKMEAHKKLRVECLTADDAWMLF 324 (922)
Q Consensus 259 ~kr~LlVlDdv~~~---~~~~~-l~~~~~~-~~~gs~IivTtR~~~v---------~~~~~~~~~~~l~~L~~~ea~~Lf 324 (922)
+-. +||+||+... ..|+. +...+.. ...|..||+|++...- .+.+.....+++++++.++-.+++
T Consensus 97 ~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il 175 (234)
T PRK05642 97 QYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRAL 175 (234)
T ss_pred hCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 322 6889999632 23432 2222211 1246678998875432 122234567899999999999999
Q ss_pred HHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHHH
Q 042817 325 KVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITIG 361 (922)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 361 (922)
..++....... -++...-|++.+.|..-++..+-
T Consensus 176 ~~ka~~~~~~l---~~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 176 QLRASRRGLHL---TDEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred HHHHHHcCCCC---CHHHHHHHHHhcCCCHHHHHHHH
Confidence 86664332111 24677778888877765555433
No 105
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.06 E-value=1.5e-05 Score=85.48 Aligned_cols=93 Identities=15% Similarity=0.178 Sum_probs=63.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCC--CCHHHHHHHHHhhccCCcccccCCChhhhHHH--
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKD--LNLEKVQEDIGKKIDMFSESWKNKSPVEKSCA-- 252 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~-- 252 (922)
.-..++|+|++|.|||||++.+++.. . ..+|+..+||.+.+. .++.++++.|...+-..+-+........++..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I-~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAI-T-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhh-c-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 44689999999999999999999998 3 348999999999876 78999999996544322211001111111111
Q ss_pred --HHHH-hcCCcEEEEEccCCC
Q 042817 253 --IFKI-LSNKKFVLLLDDMWE 271 (922)
Q Consensus 253 --l~~~-l~~kr~LlVlDdv~~ 271 (922)
.... -.+++++|++|++..
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhH
Confidence 1111 257999999999854
No 106
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=7.8e-05 Score=85.43 Aligned_cols=196 Identities=14% Similarity=0.153 Sum_probs=110.3
Q ss_pred CcccchhhHHHHHHHHhccCC-eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhcc
Q 042817 157 PRIIGQESIFDDAWRCMIEEQ-VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (922)
.+++|.+..++.|...+..+. ...+-++|+.|+||||+|+.+++..- -....+. ..++.-...+.|.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~-C~~~~~~-------~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN-CETAPTG-------EPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc-ccCCCCC-------CCCcccHHHHHHhcCCC
Confidence 367999999888888887765 36777899999999999999998872 1111100 01111111122211100
Q ss_pred CCcccc---cCCChhhhHHHHHHH-----hcCCcEEEEEccCCCc--cccccccccCCCCCCCcEEEEEcCC-hhhhcc-
Q 042817 236 MFSESW---KNKSPVEKSCAIFKI-----LSNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVFTTRY-KEVCGK- 303 (922)
Q Consensus 236 ~~~~~~---~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~-~~v~~~- 303 (922)
...... .....++ ++.+.+. ..+++-++|+|+++.. .....+...+..-.....+|++|.+ ..+...
T Consensus 88 pDv~eId~a~~~~Id~-iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI 166 (624)
T PRK14959 88 VDVVEIDGASNRGIDD-AKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTI 166 (624)
T ss_pred CceEEEecccccCHHH-HHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHH
Confidence 000000 0001111 1122222 2356679999999764 3344444444322334556665554 344322
Q ss_pred ccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCch-hHHHHHHhhh
Q 042817 304 MEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLP-LAIITIGRAM 364 (922)
Q Consensus 304 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~g~~L 364 (922)
.+....+++.+++.++....+...+...... -..+.+..|++.++|.+ .|+..+...+
T Consensus 167 ~SRcq~i~F~pLs~~eL~~~L~~il~~egi~---id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 167 VSRCQHFTFTRLSEAGLEAHLTKVLGREGVD---YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HhhhhccccCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1223578999999999998888766433211 22567788999999865 6777666544
No 107
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.02 E-value=5e-05 Score=78.07 Aligned_cols=168 Identities=10% Similarity=0.063 Sum_probs=93.8
Q ss_pred cchhhHH-HHHHHHhcc-CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCC
Q 042817 160 IGQESIF-DDAWRCMIE-EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMF 237 (922)
Q Consensus 160 vGr~~~~-~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 237 (922)
.|..... ..+.++... ...+.+.|+|..|+|||+||+++++... .... ...+++..... ..+
T Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~--~~~~-~~~~i~~~~~~------~~~------- 85 (227)
T PRK08903 22 AGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS--YGGR-NARYLDAASPL------LAF------- 85 (227)
T ss_pred cCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--hCCC-cEEEEehHHhH------HHH-------
Confidence 3554333 344444332 3446789999999999999999999862 1222 34455433211 000
Q ss_pred cccccCCChhhhHHHHHHHhcCCcEEEEEccCCCcccc--ccccccCCC-CCCCc-EEEEEcCChhhhc--------ccc
Q 042817 238 SESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPVDL--TKVGVPIPN-STNAS-KVVFTTRYKEVCG--------KME 305 (922)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~--~~l~~~~~~-~~~gs-~IivTtR~~~v~~--------~~~ 305 (922)
... ...-+||+||+...... ..+...+.. ...+. .||+|++...... .+.
T Consensus 86 -----------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~ 147 (227)
T PRK08903 86 -----------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLG 147 (227)
T ss_pred -----------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHh
Confidence 011 22347899999653221 122222211 11233 4667766543221 222
Q ss_pred ccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHHHhhh
Q 042817 306 AHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITIGRAM 364 (922)
Q Consensus 306 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L 364 (922)
....++++++++++-..++...+...... --++....+++.+.|.+..+..+-..+
T Consensus 148 ~~~~i~l~pl~~~~~~~~l~~~~~~~~v~---l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 148 WGLVYELKPLSDADKIAALKAAAAERGLQ---LADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred cCeEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 24688999999987777766544322211 124677788888999998887666544
No 108
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=6.2e-05 Score=83.92 Aligned_cols=197 Identities=13% Similarity=0.137 Sum_probs=109.3
Q ss_pred CcccchhhHHHHHHHHhccCCee-EEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEE-eCCCCCHHHHHHHHHhhc
Q 042817 157 PRIIGQESIFDDAWRCMIEEQVG-IIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVV-VSKDLNLEKVQEDIGKKI 234 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~-~s~~~~~~~~~~~i~~~l 234 (922)
..++|.+..++.+..++.++.+. .+-++|+.|+||||+|+.+++..-. ........|.. ....+..-..-+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c-~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC-QRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC-CCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 36899999999999998876654 5889999999999999999988721 11111100110 001111111122222111
Q ss_pred cCCcccc---cCCChhhhHHHHHHHh-----cCCcEEEEEccCCCc--cccccccccCCCCCCCcEEEEEc-CChhhhcc
Q 042817 235 DMFSESW---KNKSPVEKSCAIFKIL-----SNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVFTT-RYKEVCGK 303 (922)
Q Consensus 235 ~~~~~~~---~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTt-R~~~v~~~ 303 (922)
...-... .....++.. .+.+.+ .+++-++|+|+++.. ..++.+...+....+.+.+|++| +...+...
T Consensus 95 ~~n~~~~~~~~~~~id~Ir-~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~t 173 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIR-LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (397)
T ss_pred CCCeEeecccccCCHHHHH-HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHH
Confidence 0000000 001122222 223333 245668999999764 34555554554434466666555 43444322
Q ss_pred c-cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHH
Q 042817 304 M-EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAII 358 (922)
Q Consensus 304 ~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 358 (922)
. .....+++.++++++..+.+...+..... .-..+.+..|++.++|.+--+.
T Consensus 174 l~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~---~i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 174 IASRCQRFNFKRIPLEEIQQQLQGICEAEGI---SVDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 2 12357889999999998888776633221 1225678889999999875443
No 109
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=0.00011 Score=81.66 Aligned_cols=179 Identities=13% Similarity=0.202 Sum_probs=102.5
Q ss_pred CcccchhhHHHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhc-----cCCCce-EEEEEeCCCCCHHHHHHH
Q 042817 157 PRIIGQESIFDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQE-----RHDFDI-VIWVVVSKDLNLEKVQED 229 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~~~F~~-~~wv~~s~~~~~~~~~~~ 229 (922)
..++|.+..++.+.+.+..+.. +.+-++|++|+||||+|+.+.+..... ...|.. ++-++.....+..++ ++
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i-~~ 95 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDI-RN 95 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHH-HH
Confidence 3579999999999999987654 478899999999999999998876210 011211 111111111111111 11
Q ss_pred HHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCcc--ccccccccCCCCCCCcEEEEEc-CChhhhcc-cc
Q 042817 230 IGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPV--DLTKVGVPIPNSTNASKVVFTT-RYKEVCGK-ME 305 (922)
Q Consensus 230 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTt-R~~~v~~~-~~ 305 (922)
+.+++... -..+++-++++|+++... .+..+...+......+.+|++| ....+... .+
T Consensus 96 l~~~~~~~------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~s 157 (367)
T PRK14970 96 LIDQVRIP------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILS 157 (367)
T ss_pred HHHHHhhc------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHh
Confidence 11111100 012355689999986542 2444433332223345555554 33333222 12
Q ss_pred ccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHH
Q 042817 306 AHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAI 357 (922)
Q Consensus 306 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 357 (922)
....+++.++++++....+...+....... -.+....+++.++|.+-.+
T Consensus 158 r~~~v~~~~~~~~~l~~~l~~~~~~~g~~i---~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 158 RCQIFDFKRITIKDIKEHLAGIAVKEGIKF---EDDALHIIAQKADGALRDA 206 (367)
T ss_pred cceeEecCCccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhCCCCHHHH
Confidence 335789999999999988887664433211 2467788888888866533
No 110
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=7.3e-05 Score=86.56 Aligned_cols=194 Identities=14% Similarity=0.128 Sum_probs=108.1
Q ss_pred CcccchhhHHHHHHHHhccCCee-EEEEEcCCCCcHHHHHHHHHHHhhhccCCCc--eEEEEEeCCCCCHHHHHHHHHhh
Q 042817 157 PRIIGQESIFDDAWRCMIEEQVG-IIGLYGAGGVGKTTLLKQLNNKLCQERHDFD--IVIWVVVSKDLNLEKVQEDIGKK 233 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~--~~~wv~~s~~~~~~~~~~~i~~~ 233 (922)
..++|.+..++.+.+.+..++.. -+-++|+.|+||||+|+.+++..-. ..... ...+- .+....--+.|...
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c-~~~~~~~~~~~~----~cg~c~~C~~i~~g 98 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNY-EGPDGDGGPTID----LCGVGEHCQAIMEG 98 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCc-CCccccCCCccc----cCcccHHHHHHhcC
Confidence 36899999999999999876544 6889999999999999999987611 11110 00000 00111111222211
Q ss_pred ccCCc---ccccCCChhhhHHHHHHHh-----cCCcEEEEEccCCCcc--ccccccccCCCCCCCcEEEEEc-CChhhhc
Q 042817 234 IDMFS---ESWKNKSPVEKSCAIFKIL-----SNKKFVLLLDDMWEPV--DLTKVGVPIPNSTNASKVVFTT-RYKEVCG 302 (922)
Q Consensus 234 l~~~~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTt-R~~~v~~ 302 (922)
..... +.......++.. .+.+.+ .+++-++|+|+++... ..+.+...+..-..++++|++| ....+..
T Consensus 99 ~h~Dv~e~~a~s~~gvd~IR-eIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~ 177 (598)
T PRK09111 99 RHVDVLEMDAASHTGVDDIR-EIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPV 177 (598)
T ss_pred CCCceEEecccccCCHHHHH-HHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhH
Confidence 10000 000011112211 222222 2455689999996542 3444444443333456665544 4444432
Q ss_pred cc-cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHH
Q 042817 303 KM-EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIIT 359 (922)
Q Consensus 303 ~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 359 (922)
.+ +....+++..++.++....+...+...... --.+....|++.++|.+.-+..
T Consensus 178 tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~---i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 178 TVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE---VEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 22 233578999999999999998876433311 1245678889999998865543
No 111
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=9.2e-05 Score=85.07 Aligned_cols=178 Identities=15% Similarity=0.172 Sum_probs=104.0
Q ss_pred CcccchhhHHHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhcc------------------CCCceEEEEEe
Q 042817 157 PRIIGQESIFDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQER------------------HDFDIVIWVVV 217 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~F~~~~wv~~ 217 (922)
..++|.+..++.+..++..+.. +.+-++|+.|+||||+|+.++...-... +.|.-.++++.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~ 95 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDA 95 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeec
Confidence 3689999999999999887655 4567999999999999999988761100 01111222222
Q ss_pred CCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCcc--ccccccccCCCCCCCcEEEEEc
Q 042817 218 SKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPV--DLTKVGVPIPNSTNASKVVFTT 295 (922)
Q Consensus 218 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTt 295 (922)
+....+.++ +++.+..... -..+++-++|+|+++... ..+.+...+......+.+|++|
T Consensus 96 ~~~~~vd~i-r~l~~~~~~~------------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 96 ASNTQVDAM-RELLDNAQYA------------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cccCCHHHH-HHHHHHHhhC------------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 211111111 1111111100 013566799999997643 2344444443333455666555
Q ss_pred CC-hhhhcc-ccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhH
Q 042817 296 RY-KEVCGK-MEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLA 356 (922)
Q Consensus 296 R~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 356 (922)
.+ +.+... .+....+++.+++.++..+.+...+...... ...+....|++.++|.+--
T Consensus 157 ~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~---~~~~al~~la~~s~Gslr~ 216 (527)
T PRK14969 157 TDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP---FDATALQLLARAAAGSMRD 216 (527)
T ss_pred CChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHH
Confidence 44 333322 1223578999999999988887765433211 1245568889999998753
No 112
>PF14516 AAA_35: AAA-like domain
Probab=97.96 E-value=0.00057 Score=74.16 Aligned_cols=200 Identities=15% Similarity=0.214 Sum_probs=121.2
Q ss_pred CCcccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCC-----CCHHHHH---
Q 042817 156 EPRIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKD-----LNLEKVQ--- 227 (922)
Q Consensus 156 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-----~~~~~~~--- 227 (922)
.+..|.|...-+++.+.+.+. -..+.|.|+-.+|||+|...+.+.. . +..+ ..+++++..- .+....+
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l-~-~~~~-~~v~id~~~~~~~~~~~~~~f~~~~ 85 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERL-Q-QQGY-RCVYIDLQQLGSAIFSDLEQFLRWF 85 (331)
T ss_pred CCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHH-H-HCCC-EEEEEEeecCCCcccCCHHHHHHHH
Confidence 456789997778888888663 3689999999999999999999887 2 2333 4567776542 2345444
Q ss_pred -HHHHhhccCCcc---ccc--CCChhhhHHHHHHHh---cCCcEEEEEccCCCcccc----ccccccC----------CC
Q 042817 228 -EDIGKKIDMFSE---SWK--NKSPVEKSCAIFKIL---SNKKFVLLLDDMWEPVDL----TKVGVPI----------PN 284 (922)
Q Consensus 228 -~~i~~~l~~~~~---~~~--~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~~----~~l~~~~----------~~ 284 (922)
..|.++++.... -|. ..........+.+.+ .+++.+|+||+|+..... .++...+ +.
T Consensus 86 ~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~ 165 (331)
T PF14516_consen 86 CEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPI 165 (331)
T ss_pred HHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcc
Confidence 445555554321 011 112223333444433 268999999999764221 1111111 00
Q ss_pred CCCCcEEEE-Ec-CChhhhc----cccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHH
Q 042817 285 STNASKVVF-TT-RYKEVCG----KMEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAII 358 (922)
Q Consensus 285 ~~~gs~Iiv-Tt-R~~~v~~----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 358 (922)
. ..-+.++ .+ +...... -......++|++++.+|...|....-..-. ....++|...+||+|.-+.
T Consensus 166 ~-~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~-------~~~~~~l~~~tgGhP~Lv~ 237 (331)
T PF14516_consen 166 W-QKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS-------QEQLEQLMDWTGGHPYLVQ 237 (331)
T ss_pred c-ceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC-------HHHHHHHHHHHCCCHHHHH
Confidence 0 1111222 22 1111111 123345789999999999999877632211 2338999999999999999
Q ss_pred HHHhhhccC
Q 042817 359 TIGRAMSCK 367 (922)
Q Consensus 359 ~~g~~L~~~ 367 (922)
.++..+...
T Consensus 238 ~~~~~l~~~ 246 (331)
T PF14516_consen 238 KACYLLVEE 246 (331)
T ss_pred HHHHHHHHc
Confidence 999999763
No 113
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.94 E-value=5.7e-05 Score=76.49 Aligned_cols=181 Identities=16% Similarity=0.210 Sum_probs=113.2
Q ss_pred CcccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCc-eEEEEEeCCCCCHHHHHHHHHhhcc
Q 042817 157 PRIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFD-IVIWVVVSKDLNLEKVQEDIGKKID 235 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (922)
..++|.+..++-+.+.+.....+....+|++|.|||+-|++++... --.+.|. ++.-.++|......-+-..+
T Consensus 36 de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSderGisvvr~Ki----- 109 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDERGISVVREKI----- 109 (346)
T ss_pred HhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhcccccccccchhhhh-----
Confidence 3579999999999999887777899999999999999999999887 3334554 33334455443322111111
Q ss_pred CCcccccCCChhhhHHHHHHHh--cCCc-EEEEEccCCCc--cccccccccCCCCCCCcEEEEEcCC-hhhhcc-ccccc
Q 042817 236 MFSESWKNKSPVEKSCAIFKIL--SNKK-FVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVFTTRY-KEVCGK-MEAHK 308 (922)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l--~~kr-~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~-~~v~~~-~~~~~ 308 (922)
.+.+.......... ..++ -.+|||+++.. +.|..+...+.+....++.|..+.. ..+..- .+.-.
T Consensus 110 --------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~ 181 (346)
T KOG0989|consen 110 --------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQ 181 (346)
T ss_pred --------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHH
Confidence 00000000000000 0133 37899999875 5688877666665666665544443 322211 12234
Q ss_pred eeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCch
Q 042817 309 KLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLP 354 (922)
Q Consensus 309 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 354 (922)
.|..++|.+++...-+...+..+....+ .+..+.|++.++|.-
T Consensus 182 KfrFk~L~d~~iv~rL~~Ia~~E~v~~d---~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 182 KFRFKKLKDEDIVDRLEKIASKEGVDID---DDALKLIAKISDGDL 224 (346)
T ss_pred HhcCCCcchHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCcH
Confidence 6889999999999999888865543322 456788999998864
No 114
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.93 E-value=7.6e-05 Score=75.67 Aligned_cols=159 Identities=14% Similarity=0.146 Sum_probs=90.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKIL 257 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 257 (922)
...+.|+|..|+|||.|.+++++... ....-..+++++ ..++...+...+... ....+++.+
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~-~~~~~~~v~y~~------~~~f~~~~~~~~~~~-----------~~~~~~~~~ 95 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQ-KQHPGKRVVYLS------AEEFIREFADALRDG-----------EIEEFKDRL 95 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHH-HHCTTS-EEEEE------HHHHHHHHHHHHHTT-----------SHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH-hccccccceeec------HHHHHHHHHHHHHcc-----------cchhhhhhh
Confidence 45789999999999999999999973 222223466664 345555555544321 112344455
Q ss_pred cCCcEEEEEccCCCccc---ccc-ccccCC-CCCCCcEEEEEcCChhh---------hccccccceeecCCCCHHHHHHH
Q 042817 258 SNKKFVLLLDDMWEPVD---LTK-VGVPIP-NSTNASKVVFTTRYKEV---------CGKMEAHKKLRVECLTADDAWML 323 (922)
Q Consensus 258 ~~kr~LlVlDdv~~~~~---~~~-l~~~~~-~~~~gs~IivTtR~~~v---------~~~~~~~~~~~l~~L~~~ea~~L 323 (922)
+. -=+|++||++.... |++ +...+. ....|-+||+|++.... .+.+...-.+++.+++.++-.++
T Consensus 96 ~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 96 RS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRI 174 (219)
T ss_dssp CT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHH
T ss_pred hc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHH
Confidence 53 33789999976421 222 111110 01246689999965422 23334566899999999999999
Q ss_pred HHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHH
Q 042817 324 FKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAII 358 (922)
Q Consensus 324 f~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 358 (922)
+.+.+...... --++++.-|++.+.+..-.+.
T Consensus 175 l~~~a~~~~~~---l~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 175 LQKKAKERGIE---LPEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHHHHHTT-----S-HHHHHHHHHHTTSSHHHHH
T ss_pred HHHHHHHhCCC---CcHHHHHHHHHhhcCCHHHHH
Confidence 99887544322 224566667776665554444
No 115
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.93 E-value=0.00011 Score=81.67 Aligned_cols=170 Identities=15% Similarity=0.227 Sum_probs=97.2
Q ss_pred CcccchhhHHHHHHHHhcc-------------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCH
Q 042817 157 PRIIGQESIFDDAWRCMIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNL 223 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 223 (922)
..+.|++..++++.+.+.. ...+-|.++|++|+|||++|+++++.. ...| +.++.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~~-----i~v~~---- 198 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVVG---- 198 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCCE-----EEeeh----
Confidence 3678999999998886631 234568899999999999999999986 3332 22211
Q ss_pred HHHHHHHHhhccCCcccccCCChhhhHHHHHHHh-cCCcEEEEEccCCCcc------------c----cccccccCC--C
Q 042817 224 EKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKIL-SNKKFVLLLDDMWEPV------------D----LTKVGVPIP--N 284 (922)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~------------~----~~~l~~~~~--~ 284 (922)
..+. ... ... .......+.+.. ...+.+|+|||++... . +..+...+. .
T Consensus 199 ~~l~----~~~-------~g~-~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 SELV----QKF-------IGE-GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred HHHh----Hhh-------ccc-hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 1111 110 001 111222223322 3467899999997531 0 111111111 1
Q ss_pred CCCCcEEEEEcCChhhhcc--c---cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCch
Q 042817 285 STNASKVVFTTRYKEVCGK--M---EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLP 354 (922)
Q Consensus 285 ~~~gs~IivTtR~~~v~~~--~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 354 (922)
...+..||.||...+.... . .-+..+.+++.+.++-.++|.............. ...+++.+.|.-
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGAS 337 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCCC
Confidence 1235678888876543221 1 1245789999999999999988775443222223 345566666553
No 116
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.92 E-value=0.00049 Score=73.87 Aligned_cols=199 Identities=15% Similarity=0.156 Sum_probs=121.1
Q ss_pred CCcccchhhHHHHHHHHhcc----CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHH
Q 042817 156 EPRIIGQESIFDDAWRCMIE----EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIG 231 (922)
Q Consensus 156 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 231 (922)
+...+||+.+++.+.+++.. ...+-+.|.|.+|.|||.+...|+.+....... ..++++++..-....+++..|.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS-PVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc-ceeEEEeeccccchHHHHHHHH
Confidence 45789999999999998864 355789999999999999999999997321112 2567888777667778888887
Q ss_pred hhccCCcccccCCChhhhHHHHHHHhcCC--cEEEEEccCCCcc-----ccccccccCCCCCCCcEEEEEcCChhh----
Q 042817 232 KKIDMFSESWKNKSPVEKSCAIFKILSNK--KFVLLLDDMWEPV-----DLTKVGVPIPNSTNASKVVFTTRYKEV---- 300 (922)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~IivTtR~~~v---- 300 (922)
..+..... ......+....+.+...+. .+|+|+|.++... .+..+ ..+|+ -+++|+|+.---..+
T Consensus 228 ~~~~q~~~--s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~l-Fewp~-lp~sr~iLiGiANslDlTd 303 (529)
T KOG2227|consen 228 SSLLQDLV--SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTL-FEWPK-LPNSRIILIGIANSLDLTD 303 (529)
T ss_pred HHHHHHhc--CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeee-hhccc-CCcceeeeeeehhhhhHHH
Confidence 77621110 1122255556666666553 6899999987531 11111 11222 345665543221110
Q ss_pred -----hc--cccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhC----CchhHHHHHH
Q 042817 301 -----CG--KMEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECG----GLPLAIITIG 361 (922)
Q Consensus 301 -----~~--~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~----glPLai~~~g 361 (922)
.. .......+..+|-+.++-.++|..+..... .........+.+++||. .+--|+.+.-
T Consensus 304 R~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~--t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 304 RFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES--TSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred HHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc--ccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 11 112345778899999999999998875433 11222233444445554 4444444443
No 117
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=0.00015 Score=87.01 Aligned_cols=189 Identities=12% Similarity=0.134 Sum_probs=105.4
Q ss_pred cccchhhHHHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhh---
Q 042817 158 RIIGQESIFDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKK--- 233 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~--- 233 (922)
.+||.+..++.|...+..+++ +.+-++|+.|+||||+|+.+++..-.. ..... ..++.-..-+.|...
T Consensus 16 eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~-~~~~~-------~pCg~C~sC~~~~~g~~~ 87 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCV-EGPTS-------TPCGECDSCVALAPGGPG 87 (824)
T ss_pred HhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcc-cCCCC-------CCCcccHHHHHHHcCCCC
Confidence 689999999999999987655 457899999999999999999887211 11000 000000111111100
Q ss_pred -ccCCc-ccccCCChhhhHHHHHHH-----hcCCcEEEEEccCCCc--cccccccccCCCCCCCcEEEEEc-CChhhhcc
Q 042817 234 -IDMFS-ESWKNKSPVEKSCAIFKI-----LSNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVFTT-RYKEVCGK 303 (922)
Q Consensus 234 -l~~~~-~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTt-R~~~v~~~ 303 (922)
..... +.......++.. .+++. ..+++-++|||+++.. ...+.|...+..-...+.+|++| ....+...
T Consensus 88 ~~dv~eidaas~~~Vd~iR-~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~T 166 (824)
T PRK07764 88 SLDVTEIDAASHGGVDDAR-ELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGT 166 (824)
T ss_pred CCcEEEecccccCCHHHHH-HHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 00000 000001111111 12221 2355668999999864 33444444444334455556555 44444432
Q ss_pred c-cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHH
Q 042817 304 M-EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAII 358 (922)
Q Consensus 304 ~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 358 (922)
+ +....|++..++.++..+.+.+.+...... .-.+....|++.++|.+..+.
T Consensus 167 IrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~---id~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 167 IRSRTHHYPFRLVPPEVMRGYLERICAQEGVP---VEPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred HHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 2 234688999999999988887765333211 124456788999999884433
No 118
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00017 Score=83.04 Aligned_cols=194 Identities=11% Similarity=0.097 Sum_probs=106.3
Q ss_pred CcccchhhHHHHHHHHhccCCee-EEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhcc
Q 042817 157 PRIIGQESIFDDAWRCMIEEQVG-IIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (922)
.++||.+..++.+..++..+.+. .+-++|+.|+||||+|+.+++..-.. ...+ + ..++.-..-+.|...-+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~-~~~~---~----~pCg~C~~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA-QGPT---A----TPCGVCESCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccc-cCCC---C----CcccccHHHHHhhcccC
Confidence 36899999999999999876554 57899999999999999999876211 1000 0 00111111111111000
Q ss_pred CCccc--c---cCCChhhhHHHHHHH-----hcCCcEEEEEccCCCc--cccccccccCCCCCCCcEEEE-EcCChhhhc
Q 042817 236 MFSES--W---KNKSPVEKSCAIFKI-----LSNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVF-TTRYKEVCG 302 (922)
Q Consensus 236 ~~~~~--~---~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iiv-TtR~~~v~~ 302 (922)
...+. . .....++. ..+.+. ..+++-++|+|+++.. ...+.+...+..-.....+|+ ||....+..
T Consensus 85 ~~~dvieidaas~~gvd~i-Rel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~ 163 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDT-RELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLP 163 (584)
T ss_pred CCceEEEeccccccCHHHH-HHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHH
Confidence 00000 0 00011111 112211 1345668999999753 334444444433334555554 444444433
Q ss_pred c-ccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchh-HHHHHHh
Q 042817 303 K-MEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPL-AIITIGR 362 (922)
Q Consensus 303 ~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~g~ 362 (922)
. .+....|++.+++.++..+.+...+...... -..+....|++.++|.+- |+..+-.
T Consensus 164 TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~---i~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 164 TIRSRTHHYPFRLLPPRTMRALIARICEQEGVV---VDDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred HHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2 2234689999999999988887766433211 124566778889999774 4444433
No 119
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.91 E-value=0.00019 Score=80.91 Aligned_cols=176 Identities=14% Similarity=0.213 Sum_probs=102.4
Q ss_pred CcccchhhHHHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhcc--------------------CCCceEEEE
Q 042817 157 PRIIGQESIFDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQER--------------------HDFDIVIWV 215 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~~F~~~~wv 215 (922)
.+++|.+..++.+.+.+..+.. ..+-++|+.|+||||+|+.+++..-... .+++ .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~i 95 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLEI 95 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEEe
Confidence 3689999999999999977655 5678999999999999999988762110 0111 1111
Q ss_pred EeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCc--cccccccccCCCCCCCcEEEE
Q 042817 216 VVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVF 293 (922)
Q Consensus 216 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iiv 293 (922)
.......+.++. ++.+.+. ..-..+++-++|+|+++.. ...+.+...+.....+..+|+
T Consensus 96 ~g~~~~gid~ir-~i~~~l~------------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il 156 (451)
T PRK06305 96 DGASHRGIEDIR-QINETVL------------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFL 156 (451)
T ss_pred eccccCCHHHHH-HHHHHHH------------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEE
Confidence 111111111111 1111110 0011256778999998654 223334333333334556665
Q ss_pred EcC-Chhhhcc-ccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchh
Q 042817 294 TTR-YKEVCGK-MEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPL 355 (922)
Q Consensus 294 TtR-~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 355 (922)
+|. ...+... .+....+++.++++++....+...+...... --.+.+..|++.++|.+-
T Consensus 157 ~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~---i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 157 ATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE---TSREALLPIARAAQGSLR 217 (451)
T ss_pred EeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHH
Confidence 553 3333322 1234578999999999988887765432211 124577889999998764
No 120
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00022 Score=83.51 Aligned_cols=193 Identities=12% Similarity=0.136 Sum_probs=109.5
Q ss_pred CcccchhhHHHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhcc
Q 042817 157 PRIIGQESIFDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (922)
..+||.+..++.+..++..+.+ ..+-++|+.|+||||+|+.+++... -..... -...++.....+.|.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~-c~~~~~------~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN-CTTNDP------KGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc-CCCCCC------CCCCCccCHHHHHHhcCCC
Confidence 3689999999999998876654 4568999999999999999998761 111000 0011122233333332211
Q ss_pred CCcccc---cCCChhhhHHHHHHHh-----cCCcEEEEEccCCCc--cccccccccCCCCCCCcEEEEEcCC-hhhhccc
Q 042817 236 MFSESW---KNKSPVEKSCAIFKIL-----SNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVFTTRY-KEVCGKM 304 (922)
Q Consensus 236 ~~~~~~---~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~-~~v~~~~ 304 (922)
...-.. .....++. ..+.+.+ ..++-++|+|+++.. ...+.+...+......+.+|++|.+ ..+...+
T Consensus 89 ~d~~~i~~~~~~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI 167 (585)
T PRK14950 89 VDVIEMDAASHTSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATI 167 (585)
T ss_pred CeEEEEeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHH
Confidence 100000 01111221 1222222 245668999999654 3344444444333345666665543 3333211
Q ss_pred -cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHH
Q 042817 305 -EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITI 360 (922)
Q Consensus 305 -~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 360 (922)
+....+.+..++.++....+...+...... --.+.+..|++.++|.+..+...
T Consensus 168 ~SR~~~i~f~~l~~~el~~~L~~~a~~egl~---i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 168 LSRCQRFDFHRHSVADMAAHLRKIAAAEGIN---LEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HhccceeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 223578899999999888888776443311 12467788999999988655543
No 121
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.90 E-value=0.00025 Score=80.39 Aligned_cols=182 Identities=13% Similarity=0.181 Sum_probs=106.5
Q ss_pred CcccchhhHHHHHHHHhccCCee-EEEEEcCCCCcHHHHHHHHHHHhhhccC-C----------------C-ceEEEEEe
Q 042817 157 PRIIGQESIFDDAWRCMIEEQVG-IIGLYGAGGVGKTTLLKQLNNKLCQERH-D----------------F-DIVIWVVV 217 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~----------------F-~~~~wv~~ 217 (922)
..++|.+..++.+...+..+... ++-++|+.|+||||+|+.+++..-.... . + ..++.++.
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~elda 93 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDA 93 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEecc
Confidence 36899999999999999776554 6689999999999999999887511000 0 0 01122221
Q ss_pred CCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCc--cccccccccCCCCCCCcEEEEEc
Q 042817 218 SKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVFTT 295 (922)
Q Consensus 218 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTt 295 (922)
+....+.++...+ ...... -..+++-++|+|+++.. ...+.+...+..-...+++|++|
T Consensus 94 as~~gId~IReli-e~~~~~------------------P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 94 ASNRGIDDIRELI-EQTKYK------------------PSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred ccccCHHHHHHHH-HHHhhC------------------cccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEE
Confidence 1111122221111 110000 01145668999999764 23344433333333456666666
Q ss_pred CCh-hhhcc-ccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHH
Q 042817 296 RYK-EVCGK-MEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITI 360 (922)
Q Consensus 296 R~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 360 (922)
.+. .+... .+....+++.+++.++....+...+...... -..+.+..|++.++|.+--+...
T Consensus 155 td~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~---i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 155 TDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS---YEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred CChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCcHHHHHHH
Confidence 553 22211 1234688999999999998887766443311 12467788999999988554433
No 122
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.90 E-value=1.1e-05 Score=57.91 Aligned_cols=34 Identities=38% Similarity=0.550 Sum_probs=15.8
Q ss_pred cCCeeeeccCCccccchhhccCCCCCEEeCCCCc
Q 042817 587 SLQYLNLSSTGIRVLPEELKALKDLSYLNMERTS 620 (922)
Q Consensus 587 ~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~ 620 (922)
+|++|++++|+|+.+|..+++|++|++|++++|.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 3444555555555554444555555555555543
No 123
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.00026 Score=82.72 Aligned_cols=179 Identities=12% Similarity=0.209 Sum_probs=108.6
Q ss_pred CcccchhhHHHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhh--------------------ccCCCceEEEE
Q 042817 157 PRIIGQESIFDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQ--------------------ERHDFDIVIWV 215 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~--------------------~~~~F~~~~wv 215 (922)
..++|.+..++.+...+..+.. +.+-++|+.|+||||+|+.++..... ...+|+. ..+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~l 95 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HEL 95 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EEe
Confidence 3679999999999999987655 45789999999999999998887520 0113332 222
Q ss_pred EeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCc--cccccccccCCCCCCCcEEEE
Q 042817 216 VVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVF 293 (922)
Q Consensus 216 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iiv 293 (922)
+.+...++.++...+ +++.... ..+++-++|+|+++.. ...+.+...+..-..++.+|+
T Consensus 96 d~~~~~~vd~Ir~li-~~~~~~P------------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL 156 (614)
T PRK14971 96 DAASNNSVDDIRNLI-EQVRIPP------------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFIL 156 (614)
T ss_pred cccccCCHHHHHHHH-HHHhhCc------------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 322222222222111 1111100 1235568899999764 234445444433334556555
Q ss_pred -EcCChhhhcc-ccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHH
Q 042817 294 -TTRYKEVCGK-MEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAII 358 (922)
Q Consensus 294 -TtR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 358 (922)
||+...+... .+....+++.+++.++....+...+...... .-.+.+..|++.++|..--+.
T Consensus 157 ~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~---i~~~al~~La~~s~gdlr~al 220 (614)
T PRK14971 157 ATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT---AEPEALNVIAQKADGGMRDAL 220 (614)
T ss_pred EeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 5454555433 2334678999999999998888766443321 124567889999999775443
No 124
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.88 E-value=0.00024 Score=77.79 Aligned_cols=108 Identities=18% Similarity=0.184 Sum_probs=71.9
Q ss_pred CcccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccC
Q 042817 157 PRIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDM 236 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 236 (922)
..+++.++.++.+...|... +.|.++|++|+|||++|+++++.. .....|+.+.||.++...+..++..-+.-.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~G~rP~--- 248 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQGYRPN--- 248 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhcccCCC---
Confidence 35688889999999988753 467789999999999999999987 444578889999999988877665422110
Q ss_pred CcccccCCChhhhHHHHHHHhc--CCcEEEEEccCCCc
Q 042817 237 FSESWKNKSPVEKSCAIFKILS--NKKFVLLLDDMWEP 272 (922)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~ 272 (922)
.......+ .-..+.+.+.-+ +++++||+|++...
T Consensus 249 -~vgy~~~~-G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 249 -GVGFRRKD-GIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred -CCCeEecC-chHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 00000000 011112222222 47899999999653
No 125
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00023 Score=82.58 Aligned_cols=194 Identities=14% Similarity=0.152 Sum_probs=105.9
Q ss_pred CcccchhhHHHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEE-eCCCCCHHHHHHHHHhhc
Q 042817 157 PRIIGQESIFDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVV-VSKDLNLEKVQEDIGKKI 234 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~-~s~~~~~~~~~~~i~~~l 234 (922)
..++|.+..+..+.+.+..+.+ ..+-++|+.|+||||+|+.+++..- -....+.-.|.. +...++.-...+.+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~-c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC-CCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 3689999999999998877655 4588999999999999999998872 111111001110 001111111122221110
Q ss_pred cCCcccc---cCCChhhhHHHHHHHh-----cCCcEEEEEccCCCcc--ccccccccCCCCCCCcEEEE-EcCChhhhcc
Q 042817 235 DMFSESW---KNKSPVEKSCAIFKIL-----SNKKFVLLLDDMWEPV--DLTKVGVPIPNSTNASKVVF-TTRYKEVCGK 303 (922)
Q Consensus 235 ~~~~~~~---~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~Iiv-TtR~~~v~~~ 303 (922)
...-... .....++... +.+.+ .+++-++|+|+++... ..+.+...+..-...+.+|+ |++...+...
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~-l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~T 173 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQ-LRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (620)
T ss_pred CCCeEEecccccCCHHHHHH-HHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 0000000 0111222222 22222 3455689999997653 24444444433233455554 4444444332
Q ss_pred -ccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchh
Q 042817 304 -MEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPL 355 (922)
Q Consensus 304 -~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 355 (922)
......+++.+++.++....+...+...... -..+.+..|++.++|..-
T Consensus 174 I~SRc~~vef~~l~~~ei~~~L~~i~~~egi~---I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 174 IASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ---IDADALQLIARKAQGSMR 223 (620)
T ss_pred HHhhceEEecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHhCCCHH
Confidence 2335689999999999888887765432211 125677889999999654
No 126
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.87 E-value=1.2e-06 Score=98.90 Aligned_cols=124 Identities=27% Similarity=0.361 Sum_probs=78.9
Q ss_pred ccceEEeeecccccc-cccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeeec
Q 042817 516 KGVKRMSLMNNKIRN-LSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLS 594 (922)
Q Consensus 516 ~~l~~l~l~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~ 594 (922)
..+..+++..|.+.. ......+.+|..|++.+|.+..+... +..|++|++|++++| .++.+. .+..+..|+.|+++
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNLS 148 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheecccc-cccccc-chhhccchhhheec
Confidence 344444555555555 22246667777777777776665543 556777777777777 666665 36667777777777
Q ss_pred cCCccccchhhccCCCCCEEeCCCCccccccCh-hhhCCCCCCCEEEeecCC
Q 042817 595 STGIRVLPEELKALKDLSYLNMERTSFVRRIPR-QLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 595 ~~~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~ 645 (922)
+|.|+.++ .+..+++|+.+++++|. +..++. . ...+.+|+.+.+.++.
T Consensus 149 ~N~i~~~~-~~~~l~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 149 GNLISDIS-GLESLKSLKLLDLSYNR-IVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred cCcchhcc-CCccchhhhcccCCcch-hhhhhhhh-hhhccchHHHhccCCc
Confidence 77777664 45557777777777776 344443 1 2566667777776665
No 127
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.86 E-value=8.4e-05 Score=77.49 Aligned_cols=165 Identities=17% Similarity=0.215 Sum_probs=104.1
Q ss_pred CCcccchhhHHHHHHHHhccCC--e-eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHh
Q 042817 156 EPRIIGQESIFDDAWRCMIEEQ--V-GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGK 232 (922)
Q Consensus 156 ~~~~vGr~~~~~~l~~~L~~~~--~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 232 (922)
++.|.+|+..+..+..++.+.. . ..|.|+|-.|.|||.+.+++++.. .. ..+|+++-+.++...++.+|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~---n~---~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL---NL---ENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc---CC---cceeeehHHhccHHHHHHHHHH
Confidence 4678999999999999987643 2 456899999999999999999987 22 3589999999999999999999
Q ss_pred hccCCcccccCCCh--hh---hHHHHHH--Hh--cCCcEEEEEccCCCcccccccccc----CC--CCCCCcEEEEEcCC
Q 042817 233 KIDMFSESWKNKSP--VE---KSCAIFK--IL--SNKKFVLLLDDMWEPVDLTKVGVP----IP--NSTNASKVVFTTRY 297 (922)
Q Consensus 233 ~l~~~~~~~~~~~~--~~---~~~~l~~--~l--~~kr~LlVlDdv~~~~~~~~l~~~----~~--~~~~gs~IivTtR~ 297 (922)
+.+....+...... +. ....+.+ .. +++.++||||+++...|.+...-+ +. -..+.. +|+++--
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i-~iils~~ 157 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTI-VIILSAP 157 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCce-EEEEecc
Confidence 98632221111111 11 1222222 11 146899999999876554433111 00 112223 3333332
Q ss_pred h-h-h-hccccccc--eeecCCCCHHHHHHHHHHh
Q 042817 298 K-E-V-CGKMEAHK--KLRVECLTADDAWMLFKVK 327 (922)
Q Consensus 298 ~-~-v-~~~~~~~~--~~~l~~L~~~ea~~Lf~~~ 327 (922)
. + . ...++... ++..+.-+.+|..+++.+.
T Consensus 158 ~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 158 SCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 1 1 1 12233333 4566788899999988653
No 128
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.85 E-value=2.2e-05 Score=84.71 Aligned_cols=79 Identities=15% Similarity=0.291 Sum_probs=41.9
Q ss_pred cccceEEeeecccccccccccCCCCceEEEeccC-cccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeee
Q 042817 515 WKGVKRMSLMNNKIRNLSEPATCPHLLTLFLQNN-RLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNL 593 (922)
Q Consensus 515 ~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L 593 (922)
+.++++|+++++.+..+|.. ..+|++|.+++| .+..+|.. + .++|++|++++|..+..+|++ |+.|++
T Consensus 51 ~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L 119 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPES------VRSLEI 119 (426)
T ss_pred hcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCch-h--hhhhhheEccCcccccccccc------cceEEe
Confidence 45566677776666666522 234666666665 34344332 2 246666666666555556543 444445
Q ss_pred ccCC---ccccchh
Q 042817 594 SSTG---IRVLPEE 604 (922)
Q Consensus 594 ~~~~---i~~lp~~ 604 (922)
.++. +..+|++
T Consensus 120 ~~n~~~~L~~LPss 133 (426)
T PRK15386 120 KGSATDSIKNVPNG 133 (426)
T ss_pred CCCCCcccccCcch
Confidence 4433 3445543
No 129
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.84 E-value=2e-06 Score=96.98 Aligned_cols=210 Identities=23% Similarity=0.284 Sum_probs=132.1
Q ss_pred CCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeeeccCCccccchhhccCCCCCEEe
Q 042817 536 TCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSSTGIRVLPEELKALKDLSYLN 615 (922)
Q Consensus 536 ~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~ 615 (922)
.+..+..+.+..|.+..+... +..+++|.+|++.+| .+..+...+..+++|++|++++|.|+.+. .+..++.|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~-l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNH-LSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhhhhhhhcc-cccccceeeeecccc-chhhcccchhhhhcchheecccccccccc-chhhccchhhhe
Confidence 456666677777776653332 678899999999999 88888876889999999999999999885 678888899999
Q ss_pred CCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHH--hhcCCCCceEEEEEechhHHHHHhhcc
Q 042817 616 MERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEE--LLCLNHLSVLSVCLESDQALRKFLSSY 693 (922)
Q Consensus 616 l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~--L~~L~~L~~L~l~~~~~~~~~~l~~~~ 693 (922)
+.+|. +..++. +..+++|+.+++.+|... .++. +..+.+++.+.+..+....+..+...
T Consensus 147 l~~N~-i~~~~~--~~~l~~L~~l~l~~n~i~---------------~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~- 207 (414)
T KOG0531|consen 147 LSGNL-ISDISG--LESLKSLKLLDLSYNRIV---------------DIENDELSELISLEELDLGGNSIREIEGLDLL- 207 (414)
T ss_pred eccCc-chhccC--CccchhhhcccCCcchhh---------------hhhhhhhhhccchHHHhccCCchhcccchHHH-
Confidence 99997 566665 677999999999998743 2222 46677777777665544333222111
Q ss_pred cccCcceEEEEcCccccccccccc-cccccc--ccceeeecccCCcceeecccccccCCCCCccCCcccEEEEecCCCCC
Q 042817 694 RLKSSTQTLRLRKLKKESESLRTL-SLTDME--KLRNLFIADSSFEKLQIDCVGEIRKTPETSRFHNLHRVGIVNCKSLK 770 (922)
Q Consensus 694 ~~~~~L~~L~l~~~~~~~~~~~~l-~l~~~~--~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~ 770 (922)
..+..+++.... +..+ .+..+. +|+.+.++++.+.... ... ..+.++..|++.+. .+.
T Consensus 208 ---~~l~~~~l~~n~-----i~~~~~l~~~~~~~L~~l~l~~n~i~~~~-~~~---------~~~~~l~~l~~~~n-~~~ 268 (414)
T KOG0531|consen 208 ---KKLVLLSLLDNK-----ISKLEGLNELVMLHLRELYLSGNRISRSP-EGL---------ENLKNLPVLDLSSN-RIS 268 (414)
T ss_pred ---HHHHHhhccccc-----ceeccCcccchhHHHHHHhcccCcccccc-ccc---------cccccccccchhhc-ccc
Confidence 111111222221 1111 122223 3778888887766532 111 22666777776654 333
Q ss_pred CCchhhccCCCcEEEE
Q 042817 771 DITWLIFAPNLRILEI 786 (922)
Q Consensus 771 ~l~~l~~l~~L~~L~L 786 (922)
.+..+...+.+..+..
T Consensus 269 ~~~~~~~~~~~~~~~~ 284 (414)
T KOG0531|consen 269 NLEGLERLPKLSELWL 284 (414)
T ss_pred ccccccccchHHHhcc
Confidence 3333333344444433
No 130
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.84 E-value=0.00037 Score=78.54 Aligned_cols=166 Identities=14% Similarity=0.132 Sum_probs=102.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKIL 257 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 257 (922)
...+.|+|..|+|||+|++++++.. .....-..+++++ ..++...+...+.... .....+.+.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l-~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~---------~~~~~~~~~~ 204 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYI-ESNFSDLKVSYMS------GDEFARKAVDILQKTH---------KEIEQFKNEI 204 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHH-HHhCCCCeEEEEE------HHHHHHHHHHHHHHhh---------hHHHHHHHHh
Confidence 3568999999999999999999976 2222223445554 3456666666554210 1122344444
Q ss_pred cCCcEEEEEccCCCcc---cc-ccccccCCC-CCCCcEEEEEcCChh---------hhccccccceeecCCCCHHHHHHH
Q 042817 258 SNKKFVLLLDDMWEPV---DL-TKVGVPIPN-STNASKVVFTTRYKE---------VCGKMEAHKKLRVECLTADDAWML 323 (922)
Q Consensus 258 ~~kr~LlVlDdv~~~~---~~-~~l~~~~~~-~~~gs~IivTtR~~~---------v~~~~~~~~~~~l~~L~~~ea~~L 323 (922)
++ .-+||+||+.... .+ +.+...+.. ...|..||+|+.... +...+...-.+.+++++.++-.++
T Consensus 205 ~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 205 CQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred cc-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHH
Confidence 43 4488899996432 12 222222211 123456888876432 233344566788999999999999
Q ss_pred HHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHHH
Q 042817 324 FKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITIG 361 (922)
Q Consensus 324 f~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 361 (922)
+.+++...... ..--++...-|++.++|.|-.+..+.
T Consensus 284 L~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 284 IKKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 99887543211 12236778889999999997776554
No 131
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.83 E-value=2.2e-05 Score=56.37 Aligned_cols=41 Identities=39% Similarity=0.609 Sum_probs=34.8
Q ss_pred CCceEEEccCCCCCcccCccccCcccCCeeeeccCCccccch
Q 042817 562 PSLKVLNLSNNFSLREFPPGISKLISLQYLNLSSTGIRVLPE 603 (922)
Q Consensus 562 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~ 603 (922)
++|++|++++| .++.+|+.+++|++|++|++++|.|+.+|.
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 47999999999 889999889999999999999999987763
No 132
>CHL00181 cbbX CbbX; Provisional
Probab=97.83 E-value=0.00026 Score=74.84 Aligned_cols=132 Identities=14% Similarity=0.159 Sum_probs=70.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHHhcC
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSN 259 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 259 (922)
.+.++|++|+||||+|+.+++.. ...+.-...-|+.++. ..+.... .+ .........+.+ .
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~-~~~g~~~~~~~~~v~~----~~l~~~~---~g--------~~~~~~~~~l~~-a-- 121 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADIL-YKLGYIKKGHLLTVTR----DDLVGQY---IG--------HTAPKTKEVLKK-A-- 121 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH-HHcCCCCCCceEEecH----HHHHHHH---hc--------cchHHHHHHHHH-c--
Confidence 47889999999999999998875 2111111112444441 1222111 11 011111112222 1
Q ss_pred CcEEEEEccCCCc-----------cccccccccCCCCCCCcEEEEEcCChhhhccc--------cccceeecCCCCHHHH
Q 042817 260 KKFVLLLDDMWEP-----------VDLTKVGVPIPNSTNASKVVFTTRYKEVCGKM--------EAHKKLRVECLTADDA 320 (922)
Q Consensus 260 kr~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~IivTtR~~~v~~~~--------~~~~~~~l~~L~~~ea 320 (922)
..-+|+||++... +....+...+.+...+.+||+++....+.... .....+.+++++.+|.
T Consensus 122 ~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el 201 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEEL 201 (287)
T ss_pred cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHH
Confidence 2349999999642 11122223333334456777777644332111 1235789999999999
Q ss_pred HHHHHHhhCC
Q 042817 321 WMLFKVKVGE 330 (922)
Q Consensus 321 ~~Lf~~~~~~ 330 (922)
.+++...+..
T Consensus 202 ~~I~~~~l~~ 211 (287)
T CHL00181 202 LQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHH
Confidence 9998877643
No 133
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.83 E-value=0.00015 Score=76.04 Aligned_cols=154 Identities=15% Similarity=0.136 Sum_probs=78.5
Q ss_pred cccchhhHHHHHHHH---hc------c------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCC
Q 042817 158 RIIGQESIFDDAWRC---MI------E------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLN 222 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~---L~------~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~ 222 (922)
.++|.+..+++|.+. .. . +...-+.++|++|+||||+|+.+++.... ...-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~-~~~~~~~~~v~~~~~-- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKE-MNVLSKGHLIEVERA-- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHh-cCcccCCceEEecHH--
Confidence 478888777666433 21 0 13446789999999999999999987521 111111122333221
Q ss_pred HHHHHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCcc----------ccccccccCCCCCCCcEEE
Q 042817 223 LEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPV----------DLTKVGVPIPNSTNASKVV 292 (922)
Q Consensus 223 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~l~~~~~~~~~gs~Ii 292 (922)
++.. .. ...........+ +.. ..-+|++|++.... ..+.+...+........+|
T Consensus 84 --~l~~----~~-------~g~~~~~~~~~~-~~a--~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vi 147 (261)
T TIGR02881 84 --DLVG----EY-------IGHTAQKTREVI-KKA--LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLI 147 (261)
T ss_pred --Hhhh----hh-------ccchHHHHHHHH-Hhc--cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEE
Confidence 1111 00 001111111112 111 23489999997521 2233333332322333455
Q ss_pred EEcCChhhhc------cc-c-ccceeecCCCCHHHHHHHHHHhhCC
Q 042817 293 FTTRYKEVCG------KM-E-AHKKLRVECLTADDAWMLFKVKVGE 330 (922)
Q Consensus 293 vTtR~~~v~~------~~-~-~~~~~~l~~L~~~ea~~Lf~~~~~~ 330 (922)
+++...+.-. .. . ....+.+++++.++-.+++...+..
T Consensus 148 la~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 148 LAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred ecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 5554332210 11 1 1346789999999999999877643
No 134
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.82 E-value=4.8e-05 Score=82.21 Aligned_cols=73 Identities=14% Similarity=0.239 Sum_probs=50.0
Q ss_pred hccCCCceEEEccCCCCCcccCccccCcccCCeeeeccC-CccccchhhccCCCCCEEeCCCCccccccChhhhCCCCCC
Q 042817 558 FQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSST-GIRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLL 636 (922)
Q Consensus 558 ~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~-~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L 636 (922)
+..+.+++.|++++| .++.+|. -..+|+.|.+++| .++.+|..+. .+|++|++++|..+..+|. +|
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~-------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE-------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc-------cc
Confidence 344678888888888 7888873 2335888888875 6677776553 5788888888865666664 35
Q ss_pred CEEEeec
Q 042817 637 RVLRMLD 643 (922)
Q Consensus 637 ~~L~l~~ 643 (922)
++|++.+
T Consensus 115 e~L~L~~ 121 (426)
T PRK15386 115 RSLEIKG 121 (426)
T ss_pred ceEEeCC
Confidence 6666653
No 135
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.82 E-value=0.00024 Score=75.13 Aligned_cols=154 Identities=11% Similarity=0.071 Sum_probs=81.2
Q ss_pred cccchhhHHHHHHHHhc---c------------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCC
Q 042817 158 RIIGQESIFDDAWRCMI---E------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLN 222 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~---~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~ 222 (922)
.++|.+..+++|.+... - ....-+.++|++|+||||+|+.++.... ..+.....-++.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~-~~g~~~~~~~v~v~~--- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILH-RLGYVRKGHLVSVTR--- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHH-HcCCcccceEEEecH---
Confidence 46777766666544321 0 0122578999999999999998888762 122221112444442
Q ss_pred HHHHHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCc-----------cccccccccCCCCCCCcEE
Q 042817 223 LEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEP-----------VDLTKVGVPIPNSTNASKV 291 (922)
Q Consensus 223 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~I 291 (922)
.++ ...+.. .........+. .. ..-+|+||++... .....+...+.....+.+|
T Consensus 99 -~~l----~~~~~g-------~~~~~~~~~~~-~a--~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~v 163 (284)
T TIGR02880 99 -DDL----VGQYIG-------HTAPKTKEILK-RA--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVV 163 (284)
T ss_pred -HHH----hHhhcc-------cchHHHHHHHH-Hc--cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEE
Confidence 122 111111 11111111122 22 3468999999632 1122233333333445667
Q ss_pred EEEcCChhhhccc--------cccceeecCCCCHHHHHHHHHHhhCC
Q 042817 292 VFTTRYKEVCGKM--------EAHKKLRVECLTADDAWMLFKVKVGE 330 (922)
Q Consensus 292 ivTtR~~~v~~~~--------~~~~~~~l~~L~~~ea~~Lf~~~~~~ 330 (922)
|+++.....-... .....+++++++.+|-.+++...+..
T Consensus 164 I~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 164 ILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred EEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 7776543221111 11356899999999999998877643
No 136
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=8.3e-06 Score=81.55 Aligned_cols=81 Identities=30% Similarity=0.425 Sum_probs=48.7
Q ss_pred cCCCCceEEEeccCcccccch--hhhccCCCceEEEccCCCCCc----ccCccccCcccCCeeeeccCCcc--ccchhhc
Q 042817 535 ATCPHLLTLFLQNNRLSNITA--NFFQFMPSLKVLNLSNNFSLR----EFPPGISKLISLQYLNLSSTGIR--VLPEELK 606 (922)
Q Consensus 535 ~~~~~L~~L~l~~~~l~~~~~--~~~~~l~~L~~L~L~~~~~l~----~lp~~i~~L~~L~~L~L~~~~i~--~lp~~l~ 606 (922)
..+..++.++|.+|.++.+.. ..+.+|++|++|+|+.| .+. .+| -.+.+|++|-|.++.+. ...+.+.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l~ 143 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSSLD 143 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCCccccCc---ccccceEEEEEcCCCCChhhhhhhhh
Confidence 456677777777776655432 33567777777777776 332 233 23456777777766443 4445555
Q ss_pred cCCCCCEEeCCCC
Q 042817 607 ALKDLSYLNMERT 619 (922)
Q Consensus 607 ~l~~L~~L~l~~~ 619 (922)
.++.++.|+++.|
T Consensus 144 ~lP~vtelHmS~N 156 (418)
T KOG2982|consen 144 DLPKVTELHMSDN 156 (418)
T ss_pred cchhhhhhhhccc
Confidence 6666666666655
No 137
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.79 E-value=0.00052 Score=80.05 Aligned_cols=184 Identities=14% Similarity=0.162 Sum_probs=102.7
Q ss_pred CcccchhhHHHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhcc
Q 042817 157 PRIIGQESIFDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (922)
..++|.+..++.+...+..+++ +.+-++|+.|+||||+|+.++...-. ....+ .+ ....-.... .+
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC-~~~~~--~~-------~pC~~C~~~---~~ 84 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNC-SHKTD--LL-------EPCQECIEN---VN 84 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcc-cccCC--CC-------CchhHHHHh---hc
Confidence 3679999999999999987654 46678999999999999999887611 11000 00 000000000 00
Q ss_pred CCccc--c---cCCChhhhHHHHHHHh-----cCCcEEEEEccCCCc--cccccccccCCCCCCCcEEE-EEcCChhhhc
Q 042817 236 MFSES--W---KNKSPVEKSCAIFKIL-----SNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVV-FTTRYKEVCG 302 (922)
Q Consensus 236 ~~~~~--~---~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Ii-vTtR~~~v~~ 302 (922)
...+- . .....++ .+.+.+.+ .+++-++|+|++... ..+..+...+..-.....+| +|++...+..
T Consensus 85 ~~~Dvieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~ 163 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPL 163 (725)
T ss_pred CCCcEEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhH
Confidence 00000 0 0011111 12222222 256669999999754 33444443333223344444 4544444432
Q ss_pred c-ccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHH
Q 042817 303 K-MEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAI 357 (922)
Q Consensus 303 ~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 357 (922)
. .+....+++.+++.++....+...+...... ...+.+..|++.++|.+--+
T Consensus 164 TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~---id~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 164 TILSRVQRFNFRRISEDEIVSRLEFILEKENIS---YEKNALKLIAKLSSGSLRDA 216 (725)
T ss_pred HHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 2 2234689999999999988887765433211 12456788999999876433
No 138
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00059 Score=77.46 Aligned_cols=177 Identities=16% Similarity=0.173 Sum_probs=103.0
Q ss_pred CcccchhhHHHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhccC------------------CCceEEEEEe
Q 042817 157 PRIIGQESIFDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQERH------------------DFDIVIWVVV 217 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~F~~~~wv~~ 217 (922)
..++|.+..++.+.+.+..+.+ +.+.++|+.|+||||+|+.++........ .|...++++.
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eida 95 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDA 95 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeC
Confidence 3579999999999999977554 45678999999999999999887511000 0111222221
Q ss_pred CCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHHh-----cCCcEEEEEccCCCc--cccccccccCCCCCCCcE
Q 042817 218 SKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKIL-----SNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASK 290 (922)
Q Consensus 218 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ 290 (922)
+....+.+ .+.+.+.. .+++-++|+|+++.. ...+.+...+........
T Consensus 96 as~~gvd~------------------------ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 96 ASNRGIDD------------------------IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred ccCCCHHH------------------------HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 11111111 11222222 356679999999754 233444333333233445
Q ss_pred EEEEc-CChhhhcc-ccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHH
Q 042817 291 VVFTT-RYKEVCGK-MEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITI 360 (922)
Q Consensus 291 IivTt-R~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 360 (922)
+|++| +...+... ......+.+.+++.++....+...+...... ...+....|++.++|.+-.+...
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~---id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE---YEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 55444 43333221 1223578999999999988888766433211 12456778888899877544433
No 139
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.004 Score=70.74 Aligned_cols=154 Identities=20% Similarity=0.249 Sum_probs=90.4
Q ss_pred CcccchhhHHHHHHHHhcc------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHH
Q 042817 157 PRIIGQESIFDDAWRCMIE------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDI 230 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 230 (922)
.+-+|.++.+++|+++|.- -+-+++.+||++|+|||.|++.+++.. ...| +-+++++-.|..+|.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~Rkf---vR~sLGGvrDEAEIR--- 393 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKF---VRISLGGVRDEAEIR--- 393 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCE---EEEecCccccHHHhc---
Confidence 3459999999999999852 234799999999999999999999998 4444 334455444444432
Q ss_pred HhhccCCcccccCCChhhhHHHHHHH---hcCCcEEEEEccCCCcc---------cccccccc-----CCCC-----CCC
Q 042817 231 GKKIDMFSESWKNKSPVEKSCAIFKI---LSNKKFVLLLDDMWEPV---------DLTKVGVP-----IPNS-----TNA 288 (922)
Q Consensus 231 ~~~l~~~~~~~~~~~~~~~~~~l~~~---l~~kr~LlVlDdv~~~~---------~~~~l~~~-----~~~~-----~~g 288 (922)
.+...+-. .+.-++.+. .+.+.=+++||.++... .+.++..| |.+. .-=
T Consensus 394 -----GHRRTYIG----amPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDL 464 (782)
T COG0466 394 -----GHRRTYIG----AMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDL 464 (782)
T ss_pred -----cccccccc----cCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccch
Confidence 11111111 111123332 34567799999997631 11112111 1110 112
Q ss_pred cEEE-EEcCCh-h-h-hccccccceeecCCCCHHHHHHHHHHhh
Q 042817 289 SKVV-FTTRYK-E-V-CGKMEAHKKLRVECLTADDAWMLFKVKV 328 (922)
Q Consensus 289 s~Ii-vTtR~~-~-v-~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 328 (922)
|+|+ |||-+. + + +..++...++++.+-+++|=.++-+++.
T Consensus 465 S~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred hheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 4444 444332 2 2 2334556789999999999888776654
No 140
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.75 E-value=0.0034 Score=76.37 Aligned_cols=46 Identities=26% Similarity=0.325 Sum_probs=38.2
Q ss_pred CcccchhhHHHHHHHHhcc------CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 157 PRIIGQESIFDDAWRCMIE------EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..++|.+..+++|.+++.. ....++.++|++|+|||++|+.+++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999887642 133589999999999999999999987
No 141
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.74 E-value=0.00017 Score=78.48 Aligned_cols=144 Identities=15% Similarity=0.151 Sum_probs=82.9
Q ss_pred CcccchhhHHHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhcc
Q 042817 157 PRIIGQESIFDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (922)
..++|.+...+.+..++..+.. .++.++|++|+||||+|+++++.. ... ...++.+. .....+...+.....
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~~---~~~i~~~~-~~~~~i~~~l~~~~~ 93 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV---GAE---VLFVNGSD-CRIDFVRNRLTRFAS 93 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---Ccc---ceEeccCc-ccHHHHHHHHHHHHH
Confidence 3679999999999999876554 567779999999999999999876 222 23444443 122222111111100
Q ss_pred CCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCc--cc-cccccccCCCCCCCcEEEEEcCChhhh-cc-cccccee
Q 042817 236 MFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEP--VD-LTKVGVPIPNSTNASKVVFTTRYKEVC-GK-MEAHKKL 310 (922)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~-~~~l~~~~~~~~~gs~IivTtR~~~v~-~~-~~~~~~~ 310 (922)
. ..+...+-++|+||++.. .+ ...+...+.....++++|+||...... .. .+....+
T Consensus 94 ~------------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i 155 (316)
T PHA02544 94 T------------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVI 155 (316)
T ss_pred h------------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEE
Confidence 0 001134568999999754 11 122222232334567888888654321 11 1122356
Q ss_pred ecCCCCHHHHHHHHH
Q 042817 311 RVECLTADDAWMLFK 325 (922)
Q Consensus 311 ~l~~L~~~ea~~Lf~ 325 (922)
.++..+.++..+++.
T Consensus 156 ~~~~p~~~~~~~il~ 170 (316)
T PHA02544 156 DFGVPTKEEQIEMMK 170 (316)
T ss_pred EeCCCCHHHHHHHHH
Confidence 777777777766654
No 142
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=1.1e-05 Score=80.79 Aligned_cols=102 Identities=25% Similarity=0.328 Sum_probs=52.7
Q ss_pred ceEEEeccCcccccch--hhhccCCCceEEEccCCCCCcc---cCccccCcccCCeeeeccCCcc----ccchhhccCCC
Q 042817 540 LLTLFLQNNRLSNITA--NFFQFMPSLKVLNLSNNFSLRE---FPPGISKLISLQYLNLSSTGIR----VLPEELKALKD 610 (922)
Q Consensus 540 L~~L~l~~~~l~~~~~--~~~~~l~~L~~L~L~~~~~l~~---lp~~i~~L~~L~~L~L~~~~i~----~lp~~l~~l~~ 610 (922)
+..|.+.++.+..... .+-...++++.|||.+| .+.. +-..+.+|++|++|+|+.|.+. .+| --+.+
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~n 122 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKN 122 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccc
Confidence 3355555665544322 22234566777777777 4443 2233456677777777776543 333 23456
Q ss_pred CCEEeCCCCccccccChhhhCCCCCCCEEEeecCC
Q 042817 611 LSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 611 L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 645 (922)
|+.|-|.|+..--.-....+..+|.+++|+++.|+
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 66666666542111112224556666666666553
No 143
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.73 E-value=0.00023 Score=86.43 Aligned_cols=177 Identities=11% Similarity=0.111 Sum_probs=98.0
Q ss_pred cccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCC----CceEEE-EEeCCCCCHHHHHHHHHh
Q 042817 158 RIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHD----FDIVIW-VVVSKDLNLEKVQEDIGK 232 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----F~~~~w-v~~s~~~~~~~~~~~i~~ 232 (922)
.++||+.++.+++..|......-+.++|.+|+||||+|..+++... .... .+..+| ++.+.- .
T Consensus 188 ~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~-~~~v~~~l~~~~i~~l~l~~l----------~- 255 (852)
T TIGR03345 188 PVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIA-AGDVPPALRNVRLLSLDLGLL----------Q- 255 (852)
T ss_pred cccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHh-hCCCCccccCCeEEEeehhhh----------h-
Confidence 5799999999999998776555667999999999999999999862 1111 122222 222210 0
Q ss_pred hccCCcccccCCChhhhHHHHHHHhc--CCcEEEEEccCCCcc---------ccccccccCCCCCCC-cEEEEEcCChhh
Q 042817 233 KIDMFSESWKNKSPVEKSCAIFKILS--NKKFVLLLDDMWEPV---------DLTKVGVPIPNSTNA-SKVVFTTRYKEV 300 (922)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~---------~~~~l~~~~~~~~~g-s~IivTtR~~~v 300 (922)
.. .. .....++..+.+.+.++ +++.+|++|++.... +...+..+.. ..| -++|-||...+.
T Consensus 256 --ag--~~-~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l--~~G~l~~IgaTT~~e~ 328 (852)
T TIGR03345 256 --AG--AS-VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL--ARGELRTIAATTWAEY 328 (852)
T ss_pred --cc--cc-cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh--hCCCeEEEEecCHHHH
Confidence 00 00 01112222222333222 468999999986532 1111222222 233 466766665433
Q ss_pred hcc-------ccccceeecCCCCHHHHHHHHHHhhCCCCCCCC-CChhHHHHHHHHHhCCc
Q 042817 301 CGK-------MEAHKKLRVECLTADDAWMLFKVKVGEDTIDSH-PEIPKHAQLVAKECGGL 353 (922)
Q Consensus 301 ~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~-~~~~~~~~~i~~~c~gl 353 (922)
... ......+.+++++.+++.+++............ .-..+....+++.+.+.
T Consensus 329 ~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 329 KKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred hhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 111 122358999999999999997544322110001 11234456666666544
No 144
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.73 E-value=0.00072 Score=76.05 Aligned_cols=159 Identities=18% Similarity=0.196 Sum_probs=93.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKIL 257 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 257 (922)
...+.|+|..|+|||+||+++++.. .....-..+++++. .++...+...+... . ...+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l-~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-------~----~~~~~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEI-LENNPNAKVVYVSS------EKFTNDFVNALRNN-------K----MEEFKEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCCcEEEEEH------HHHHHHHHHHHHcC-------C----HHHHHHHH
Confidence 3578999999999999999999987 22211134566643 33444444444211 1 12233344
Q ss_pred cCCcEEEEEccCCCccc---c-ccccccCCC-CCCCcEEEEEcCChh---------hhccccccceeecCCCCHHHHHHH
Q 042817 258 SNKKFVLLLDDMWEPVD---L-TKVGVPIPN-STNASKVVFTTRYKE---------VCGKMEAHKKLRVECLTADDAWML 323 (922)
Q Consensus 258 ~~kr~LlVlDdv~~~~~---~-~~l~~~~~~-~~~gs~IivTtR~~~---------v~~~~~~~~~~~l~~L~~~ea~~L 323 (922)
++ .-+|||||+..... + +.+...+.. ...|..||+|+.... +...+.....+.+++.+.++-..+
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 33 33889999975321 1 112111111 123456888876421 222333445789999999999999
Q ss_pred HHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHH
Q 042817 324 FKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAII 358 (922)
Q Consensus 324 f~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 358 (922)
+...+....... -++...-|++.+.|..-.+.
T Consensus 277 l~~~~~~~~~~l---~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 277 LQKKAEEEGLEL---PDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHcCCCC---CHHHHHHHHHhcCCCHHHHH
Confidence 998875443222 25677888888888765444
No 145
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00073 Score=78.98 Aligned_cols=194 Identities=13% Similarity=0.127 Sum_probs=107.4
Q ss_pred CcccchhhHHHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhcc
Q 042817 157 PRIIGQESIFDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (922)
..++|.+..++.+..++..+.. ..+-++|+.|+||||+|+.+++..- ....+.. ....+......+.+.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~--c~~~~~~----~~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN--CLNSDKP----TPEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhc--CCCcCCC----CCCCCcccHHHHHHhcCCC
Confidence 3579999999999999887643 5678999999999999999999872 1111100 0011222233333332211
Q ss_pred CCc---ccccCCChhhhHHHHHHHh-----cCCcEEEEEccCCCc--cccccccccCCCCCCCcEEEEEcCC-hhhhccc
Q 042817 236 MFS---ESWKNKSPVEKSCAIFKIL-----SNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVFTTRY-KEVCGKM 304 (922)
Q Consensus 236 ~~~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~-~~v~~~~ 304 (922)
... +.......++. +.+.+.+ .+++-++|+|+++.. .....+...+..-.....+|++|.+ ..+...+
T Consensus 90 ~D~~ei~~~~~~~vd~I-Reii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 90 LDVIEIDAASNTGVDNI-RELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred ccEEEEeccccCCHHHH-HHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHH
Confidence 100 00001111111 1222222 245568999999764 3344454444332334555544443 3333221
Q ss_pred -cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHH
Q 042817 305 -EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITI 360 (922)
Q Consensus 305 -~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 360 (922)
+....+++..++.++....+...+...... --.+.+..|++.++|.+..+...
T Consensus 169 rSRc~~~~f~~l~~~ei~~~L~~ia~kegi~---is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 169 ISRCQRFDFRRIPLEAMVQHLSEIAEKESIE---IEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 233567888999998888777665433211 11356788999999988655433
No 146
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.71 E-value=0.00073 Score=78.01 Aligned_cols=191 Identities=14% Similarity=0.123 Sum_probs=106.2
Q ss_pred CcccchhhHHHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhcc
Q 042817 157 PRIIGQESIFDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (922)
..++|.+..++.+...+..+.. +.+-++|+.|+||||+|+.+++..-. ...... ..+... ..-+.|...-.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c-~~~~~~---~pC~~C----~~C~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNC-VNGPTP---MPCGEC----SSCKSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcc-ccCCCC---CCCccc----hHHHHHHcCCC
Confidence 3689999999999999987654 46789999999999999999988621 111000 000000 00111111100
Q ss_pred CCc---ccccCCChhhhHHHHHHH-----hcCCcEEEEEccCCCc--cccccccccCCCCCCCcEEEEEcCC-hhhhcc-
Q 042817 236 MFS---ESWKNKSPVEKSCAIFKI-----LSNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVFTTRY-KEVCGK- 303 (922)
Q Consensus 236 ~~~---~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~-~~v~~~- 303 (922)
..- +.......++.. .+.+. ..+++-++|+|++... ..++.+...+..-...+.+|++|.. ..+...
T Consensus 88 ~dv~~idgas~~~vddIr-~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI 166 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVR-QIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATI 166 (563)
T ss_pred CCeEEecCcccCCHHHHH-HHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHH
Confidence 000 000001111111 11111 2356668999999764 3344554444433345666665543 333222
Q ss_pred ccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHH
Q 042817 304 MEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIIT 359 (922)
Q Consensus 304 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 359 (922)
.+....+++.+++.++..+.+...+...... --.+.+..|++.++|.+-.+..
T Consensus 167 ~SRc~~~~f~~l~~~el~~~L~~i~~~egi~---id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 167 KSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK---YEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHhceEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 1223568999999999988888776433211 2246677789999998754443
No 147
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.70 E-value=0.00022 Score=79.18 Aligned_cols=169 Identities=17% Similarity=0.178 Sum_probs=94.7
Q ss_pred cccchhhHHHHHHHHhcc-------------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHH
Q 042817 158 RIIGQESIFDDAWRCMIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLE 224 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 224 (922)
.+.|.+..++++.+.+.- ...+-+.++|++|+|||++|+++++.. ...| +.+..+.
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~f---i~V~~se----- 252 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATF---LRVVGSE----- 252 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCE---EEEecch-----
Confidence 468999998888776631 133467899999999999999999987 3344 2221111
Q ss_pred HHHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCccc----------------cccccccCC--CCC
Q 042817 225 KVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPVD----------------LTKVGVPIP--NST 286 (922)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----------------~~~l~~~~~--~~~ 286 (922)
+... . ...........+.......+.+|+||+++.... +..+...+. ...
T Consensus 253 -L~~k----~-------~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 253 -LIQK----Y-------LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred -hhhh----h-------cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 1110 0 011111111222222345788999999853210 011111111 112
Q ss_pred CCcEEEEEcCChhhhccc-----cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCc
Q 042817 287 NASKVVFTTRYKEVCGKM-----EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGL 353 (922)
Q Consensus 287 ~gs~IivTtR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 353 (922)
.+.+||+||...+..... ..+..+.++..+.++..++|..+...........+ ..++..+.|+
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl----~~la~~t~g~ 388 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDL----EEFIMAKDEL 388 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCH----HHHHHhcCCC
Confidence 356788888865543221 23457899999999999999877654433322333 3444455444
No 148
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.69 E-value=0.0004 Score=76.66 Aligned_cols=170 Identities=15% Similarity=0.180 Sum_probs=95.6
Q ss_pred cccchhhHHHHHHHHhcc-------------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHH
Q 042817 158 RIIGQESIFDDAWRCMIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLE 224 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 224 (922)
.+.|.+..++++.+.+.- ...+-+.++|++|.|||++|+++++.. ...| +.+.. .
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~f---i~i~~------s 213 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATF---IRVVG------S 213 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE---EEEeh------H
Confidence 578998888888776531 134678899999999999999999986 3333 12211 1
Q ss_pred HHHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCcc------------c----cccccccCCC--CC
Q 042817 225 KVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPV------------D----LTKVGVPIPN--ST 286 (922)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------------~----~~~l~~~~~~--~~ 286 (922)
.+... .++ .........+.......+.+|+||+++... . +..+...+.. ..
T Consensus 214 ~l~~k---~~g--------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 214 EFVQK---YLG--------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred HHHHH---hcc--------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 11111 011 111111222222334678999999986421 0 1111111111 12
Q ss_pred CCcEEEEEcCChhhhcc--c---cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCch
Q 042817 287 NASKVVFTTRYKEVCGK--M---EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLP 354 (922)
Q Consensus 287 ~gs~IivTtR~~~v~~~--~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 354 (922)
.+..||+||...+.... . .-+..+.++..+.++-.++|.............+ ..++++.+.|..
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 35678888886654321 1 2345688998899888888886654433222223 345556665553
No 149
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.0028 Score=71.52 Aligned_cols=153 Identities=16% Similarity=0.209 Sum_probs=89.9
Q ss_pred CcccchhhHHHHHHHHhcc------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHH
Q 042817 157 PRIIGQESIFDDAWRCMIE------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDI 230 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 230 (922)
..-+|.++.+++|++++.- -+-.++..+|++|+|||.+|+.++... ...| +-+++++-.|..+|-..
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL---nRkF---fRfSvGG~tDvAeIkGH- 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL---NRKF---FRFSVGGMTDVAEIKGH- 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh---CCce---EEEeccccccHHhhccc-
Confidence 3459999999999998852 245799999999999999999999998 2333 34566666666554211
Q ss_pred HhhccCCcccccCCChhhhHHHHHHHh---cCCcEEEEEccCCCcc---------cccccccc---------CCCC-CCC
Q 042817 231 GKKIDMFSESWKNKSPVEKSCAIFKIL---SNKKFVLLLDDMWEPV---------DLTKVGVP---------IPNS-TNA 288 (922)
Q Consensus 231 ~~~l~~~~~~~~~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~---------~~~~l~~~---------~~~~-~~g 288 (922)
... -...+.-++.+.| +...=|+.||.|+..- .+.++..| ..+. --=
T Consensus 484 -------RRT----YVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DL 552 (906)
T KOG2004|consen 484 -------RRT----YVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDL 552 (906)
T ss_pred -------cee----eeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccch
Confidence 111 1111122344444 3456689999997531 12222111 1111 113
Q ss_pred cEEEEEcCChhhh----ccccccceeecCCCCHHHHHHHHHHh
Q 042817 289 SKVVFTTRYKEVC----GKMEAHKKLRVECLTADDAWMLFKVK 327 (922)
Q Consensus 289 s~IivTtR~~~v~----~~~~~~~~~~l~~L~~~ea~~Lf~~~ 327 (922)
|+|++...-..+. ...+....|++.+-..+|-.++-.++
T Consensus 553 SkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~y 595 (906)
T KOG2004|consen 553 SKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERY 595 (906)
T ss_pred hheEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHh
Confidence 6666543322221 11233467888888888777666554
No 150
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.67 E-value=1.1e-06 Score=97.69 Aligned_cols=124 Identities=26% Similarity=0.379 Sum_probs=63.0
Q ss_pred cccceEEeeecccccccccc-cCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCcc-ccCcccCCeee
Q 042817 515 WKGVKRMSLMNNKIRNLSEP-ATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPG-ISKLISLQYLN 592 (922)
Q Consensus 515 ~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 592 (922)
|..+...+.++|.+..+... .-++.|+.|+|++|.+.+.. ++..+++|+.|||++| .+..+|.. ...+. |+.|+
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~ 238 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLN 238 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccc-hhccccccchhhhh-heeee
Confidence 34455555555555443332 33455566666666554443 3555666666666666 55555532 11222 66666
Q ss_pred eccCCccccchhhccCCCCCEEeCCCCcccc--ccChhhhCCCCCCCEEEeecCC
Q 042817 593 LSSTGIRVLPEELKALKDLSYLNMERTSFVR--RIPRQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 593 L~~~~i~~lp~~l~~l~~L~~L~l~~~~~l~--~lp~~~i~~l~~L~~L~l~~~~ 645 (922)
+++|.+++| .++.+|++|+.||+++|-... .+-+ ++.|..|+.|++.||.
T Consensus 239 lrnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~p--LwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 239 LRNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEP--LWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ecccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhH--HHHHHHHHHHhhcCCc
Confidence 666666555 345566666666666553211 1111 3444555555555543
No 151
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.67 E-value=1.2e-06 Score=97.24 Aligned_cols=23 Identities=9% Similarity=0.192 Sum_probs=16.3
Q ss_pred CCCccccccceEEeeeccccccc
Q 042817 509 APGIEKWKGVKRMSLMNNKIRNL 531 (922)
Q Consensus 509 ~~~~~~~~~l~~l~l~~~~~~~~ 531 (922)
.-.+..+..+|+|-+.++.+...
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~ 124 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA 124 (1096)
T ss_pred CceeccccceeeEEecCcchhhh
Confidence 34556677899998888876543
No 152
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.67 E-value=0.0012 Score=68.36 Aligned_cols=196 Identities=13% Similarity=0.140 Sum_probs=116.4
Q ss_pred Ccccchhh---HHHHHHHHhcc---CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCc----eEEEEEeCCCCCHHHH
Q 042817 157 PRIIGQES---IFDDAWRCMIE---EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFD----IVIWVVVSKDLNLEKV 226 (922)
Q Consensus 157 ~~~vGr~~---~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~----~~~wv~~s~~~~~~~~ 226 (922)
+..||... .++++.+++.. ...+-+.|||.+|+|||++++.+...+.. ...-+ .++.|.....++...+
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~-~~d~~~~~~PVv~vq~P~~p~~~~~ 112 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPP-QSDEDAERIPVVYVQMPPEPDERRF 112 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCC-CCCCCCccccEEEEecCCCCChHHH
Confidence 34555432 34445555543 24567999999999999999999988732 11111 4778888899999999
Q ss_pred HHHHHhhccCCcccccCCChhhhHHHHHHHhcC-CcEEEEEccCCCcc--------ccccccccCCCCCCCcEEEEEcCC
Q 042817 227 QEDIGKKIDMFSESWKNKSPVEKSCAIFKILSN-KKFVLLLDDMWEPV--------DLTKVGVPIPNSTNASKVVFTTRY 297 (922)
Q Consensus 227 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~--------~~~~l~~~~~~~~~gs~IivTtR~ 297 (922)
...|+.+++.+... ..+.......+...++. +--+||+|++.+.- +.-.....+.+.-.-+-|.+-|+.
T Consensus 113 Y~~IL~~lgaP~~~--~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 113 YSAILEALGAPYRP--RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHHHhCcccCC--CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 99999999987632 33444445555566654 55699999997731 111111222222233445555553
Q ss_pred h--------hhhccccccceeecCCCCH-HHHHHHHHHhhCC--CCCCCCCChhHHHHHHHHHhCCchhHHH
Q 042817 298 K--------EVCGKMEAHKKLRVECLTA-DDAWMLFKVKVGE--DTIDSHPEIPKHAQLVAKECGGLPLAII 358 (922)
Q Consensus 298 ~--------~v~~~~~~~~~~~l~~L~~-~ea~~Lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~glPLai~ 358 (922)
. +.+.. ...+.++.-.. +|...|+...... -..+..-...++++.|...++|+.=-+.
T Consensus 191 A~~al~~D~QLa~R---F~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 191 AYRALRTDPQLASR---FEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHHhccCHHHHhc---cCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 2 22222 23455555543 4455555433211 1112233457899999999999874443
No 153
>PRK06620 hypothetical protein; Validated
Probab=97.64 E-value=0.00018 Score=72.55 Aligned_cols=134 Identities=13% Similarity=0.070 Sum_probs=78.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHHhc
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILS 258 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 258 (922)
+.+.|+|++|+|||+|++++++.. .. .++. .... . . +..+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~---~~-----~~~~--~~~~----------------------~-~-------~~~~ 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS---NA-----YIIK--DIFF----------------------N-E-------EILE 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc---CC-----EEcc--hhhh----------------------c-h-------hHHh
Confidence 568999999999999999987765 11 1111 0000 0 0 0111
Q ss_pred CCcEEEEEccCCCccc--cccccccCCCCCCCcEEEEEcCChhh-------hccccccceeecCCCCHHHHHHHHHHhhC
Q 042817 259 NKKFVLLLDDMWEPVD--LTKVGVPIPNSTNASKVVFTTRYKEV-------CGKMEAHKKLRVECLTADDAWMLFKVKVG 329 (922)
Q Consensus 259 ~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~gs~IivTtR~~~v-------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 329 (922)
..-+|++||+....+ +-.+...+. ..|..||+|++.... ...+....++++++++.++-..++.+.+.
T Consensus 85 -~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 85 -KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred -cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 234788999964321 111111111 346689999885433 22334455899999999998888877764
Q ss_pred CCCCCCCCChhHHHHHHHHHhCCchhHHH
Q 042817 330 EDTIDSHPEIPKHAQLVAKECGGLPLAII 358 (922)
Q Consensus 330 ~~~~~~~~~~~~~~~~i~~~c~glPLai~ 358 (922)
..... --++...-|++.+.|.--.+.
T Consensus 162 ~~~l~---l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 162 ISSVT---ISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred HcCCC---CCHHHHHHHHHHccCCHHHHH
Confidence 32211 125667777777776554443
No 154
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.63 E-value=0.00015 Score=87.39 Aligned_cols=154 Identities=16% Similarity=0.250 Sum_probs=88.0
Q ss_pred cccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcc--CCC-ceEEEEEeCCCCCHHHHHHHHHhhc
Q 042817 158 RIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQER--HDF-DIVIWVVVSKDLNLEKVQEDIGKKI 234 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~F-~~~~wv~~s~~~~~~~~~~~i~~~l 234 (922)
.++||+.+++++++.|......-+.++|++|+|||++|+.+++...... ..+ +..+|.- +... +....
T Consensus 183 ~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~----l~a~~ 253 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGS----LLAGT 253 (731)
T ss_pred cccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHH----Hhhhc
Confidence 5799999999999998765555667999999999999999999862111 111 2333321 1111 11000
Q ss_pred cCCcccccCCChhhhHHHHHHHh-cCCcEEEEEccCCCcc----------ccccccccCCCCCCC-cEEEEEcCChhhhc
Q 042817 235 DMFSESWKNKSPVEKSCAIFKIL-SNKKFVLLLDDMWEPV----------DLTKVGVPIPNSTNA-SKVVFTTRYKEVCG 302 (922)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~----------~~~~l~~~~~~~~~g-s~IivTtR~~~v~~ 302 (922)
. ...+.++..+.+.+.+ +.++.+|++|+++... +...+..+.. ..| -++|-+|...+...
T Consensus 254 ~------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l--~~g~i~~IgaTt~~e~~~ 325 (731)
T TIGR02639 254 K------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL--SSGKLRCIGSTTYEEYKN 325 (731)
T ss_pred c------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH--hCCCeEEEEecCHHHHHH
Confidence 0 0112233333444444 3468899999997431 1112222211 223 34555555422211
Q ss_pred -------cccccceeecCCCCHHHHHHHHHHhh
Q 042817 303 -------KMEAHKKLRVECLTADDAWMLFKVKV 328 (922)
Q Consensus 303 -------~~~~~~~~~l~~L~~~ea~~Lf~~~~ 328 (922)
.......+.+++++.++..+++....
T Consensus 326 ~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 326 HFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 01123578999999999999998654
No 155
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.62 E-value=0.001 Score=75.77 Aligned_cols=159 Identities=19% Similarity=0.193 Sum_probs=94.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKIL 257 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 257 (922)
...+.|+|++|+|||+||+++++... ....--.+++++.. ++...+...+... .. ..+.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~-~~~~~~~v~yi~~~------~~~~~~~~~~~~~-------~~----~~~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYIL-EKNPNAKVVYVTSE------KFTNDFVNALRNN-------TM----EEFKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEEEHH------HHHHHHHHHHHcC-------cH----HHHHHHH
Confidence 35789999999999999999999972 22112345566533 3333444433211 11 2333444
Q ss_pred cCCcEEEEEccCCCccc---c-ccccccCCC-CCCCcEEEEEcCChh---------hhccccccceeecCCCCHHHHHHH
Q 042817 258 SNKKFVLLLDDMWEPVD---L-TKVGVPIPN-STNASKVVFTTRYKE---------VCGKMEAHKKLRVECLTADDAWML 323 (922)
Q Consensus 258 ~~kr~LlVlDdv~~~~~---~-~~l~~~~~~-~~~gs~IivTtR~~~---------v~~~~~~~~~~~l~~L~~~ea~~L 323 (922)
+ +.-+|||||+..... + +.+...+.. ...|..||+||.... +...+.....+++++.+.++-..+
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 4 344899999964311 1 122221110 123445888876532 223344456789999999999999
Q ss_pred HHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHH
Q 042817 324 FKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAII 358 (922)
Q Consensus 324 f~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 358 (922)
+...+...... --++...-|++.+.|..-.+.
T Consensus 289 l~~~~~~~~~~---l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 289 LKKKAEEEGID---LPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHHcCCC---CCHHHHHHHHcCcCCCHHHHH
Confidence 99887543211 225677888888888765443
No 156
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.62 E-value=0.00065 Score=79.19 Aligned_cols=192 Identities=15% Similarity=0.137 Sum_probs=103.2
Q ss_pred CcccchhhHHHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhcc
Q 042817 157 PRIIGQESIFDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (922)
..++|.+..++.+...+..+.+ +.+-++|+.|+||||+|+.+++..-. ....+ ...++.....+.|...-.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c-~~~~~-------~~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNC-EQGLT-------AEPCNVCPPCVEITEGRS 87 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcC-CCCCC-------CCCCCccHHHHHHhcCCC
Confidence 3689999999999999887655 46689999999999999999888611 11100 000111111111111000
Q ss_pred CCcccc---cCCChhhhHHHHHHHh-----cCCcEEEEEccCCCcc--ccccccccCCCCCCCcEEEE-EcCChhhhcc-
Q 042817 236 MFSESW---KNKSPVEKSCAIFKIL-----SNKKFVLLLDDMWEPV--DLTKVGVPIPNSTNASKVVF-TTRYKEVCGK- 303 (922)
Q Consensus 236 ~~~~~~---~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~Iiv-TtR~~~v~~~- 303 (922)
...-.. .....++ ...+.+.+ .+++-++|+|+++... ..+.+...+..-...+.+|+ ||....+...
T Consensus 88 ~d~~eid~~s~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI 166 (576)
T PRK14965 88 VDVFEIDGASNTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITI 166 (576)
T ss_pred CCeeeeeccCccCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHH
Confidence 000000 0001111 11222222 2455689999997542 23344333332233555554 4444444332
Q ss_pred ccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCch-hHHHHH
Q 042817 304 MEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLP-LAIITI 360 (922)
Q Consensus 304 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~ 360 (922)
.+....+++.+++.++....+...+...... --.+....|++.++|.. .|+..+
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~---i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 167 LSRCQRFDFRRIPLQKIVDRLRYIADQEGIS---ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2234578899999999888877665433211 12456778888998866 444433
No 157
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.61 E-value=0.00043 Score=78.03 Aligned_cols=159 Identities=15% Similarity=0.154 Sum_probs=95.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCC-ceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHH
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDF-DIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKI 256 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 256 (922)
..-+.|+|.+|+|||+||+++++... ..+. ..++|++. .++..++...+... .. ..+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~--~~~~~~~v~yi~~------~~f~~~~~~~~~~~-------~~----~~f~~~ 190 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVV--QNEPDLRVMYITS------EKFLNDLVDSMKEG-------KL----NEFREK 190 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH--HhCCCCeEEEEEH------HHHHHHHHHHHhcc-------cH----HHHHHH
Confidence 35699999999999999999999872 2222 25667754 34555555544311 11 123334
Q ss_pred hcCCcEEEEEccCCCcc---cc-ccccccCCC-CCCCcEEEEEcC-Chhh--------hccccccceeecCCCCHHHHHH
Q 042817 257 LSNKKFVLLLDDMWEPV---DL-TKVGVPIPN-STNASKVVFTTR-YKEV--------CGKMEAHKKLRVECLTADDAWM 322 (922)
Q Consensus 257 l~~kr~LlVlDdv~~~~---~~-~~l~~~~~~-~~~gs~IivTtR-~~~v--------~~~~~~~~~~~l~~L~~~ea~~ 322 (922)
++.+.-+|++||+.... .+ +.+...+.. ...|..||+||. ...- ...+.....+.+++.+.+.-..
T Consensus 191 ~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~ 270 (440)
T PRK14088 191 YRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKK 270 (440)
T ss_pred HHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHH
Confidence 44455689999997431 11 122111110 122446888885 3221 2223445678999999999999
Q ss_pred HHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHH
Q 042817 323 LFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAII 358 (922)
Q Consensus 323 Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 358 (922)
++.+.+....... -++...-|++.+.|.--.+.
T Consensus 271 IL~~~~~~~~~~l---~~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 271 IARKMLEIEHGEL---PEEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHHHhcCCCC---CHHHHHHHHhccccCHHHHH
Confidence 9988875433222 25677788888877644433
No 158
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.60 E-value=8.5e-06 Score=72.10 Aligned_cols=108 Identities=19% Similarity=0.312 Sum_probs=79.2
Q ss_pred eEEeeeccccccccc----ccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeeec
Q 042817 519 KRMSLMNNKIRNLSE----PATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLS 594 (922)
Q Consensus 519 ~~l~l~~~~~~~~~~----~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~ 594 (922)
..++++.+.+..++. ......|...++++|.+.+.|+.+-..++-+..|+|++| .+..+|..+..++.|+.|+++
T Consensus 30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccc
Confidence 344455554433322 245566777888888888888877777778888888888 888888888888888888888
Q ss_pred cCCccccchhhccCCCCCEEeCCCCccccccChh
Q 042817 595 STGIRVLPEELKALKDLSYLNMERTSFVRRIPRQ 628 (922)
Q Consensus 595 ~~~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~ 628 (922)
.|.+...|.-+..|.+|-.|+..++. ...+|.+
T Consensus 109 ~N~l~~~p~vi~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 109 FNPLNAEPRVIAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred cCccccchHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence 88888888887778888888887776 4556654
No 159
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.58 E-value=0.0016 Score=75.59 Aligned_cols=190 Identities=14% Similarity=0.131 Sum_probs=103.7
Q ss_pred CcccchhhHHHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhcc
Q 042817 157 PRIIGQESIFDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (922)
..++|.+..++.+.+++..+.. +.+-++|+.|+||||+|+.++...-. ...-+ ...++.....+.|.....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c-~~~~~-------~~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNC-LNPPD-------GEPCNECEICKAITNGSL 87 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC-CCCCC-------CCCCCccHHHHHHhcCCC
Confidence 3689999999999999876543 46678999999999999999887511 11000 001111112222211110
Q ss_pred CCccccc---CCChhhhHHHHHHHh-----cCCcEEEEEccCCCc--cccccccccCCCCCCCcEEEE-EcCChhhhcc-
Q 042817 236 MFSESWK---NKSPVEKSCAIFKIL-----SNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVF-TTRYKEVCGK- 303 (922)
Q Consensus 236 ~~~~~~~---~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iiv-TtR~~~v~~~- 303 (922)
...-..+ ....+ ....+.+.. .+++-++|+|+++.. ..+..+...+..-.....+|+ ||....+...
T Consensus 88 ~dv~eidaas~~~vd-~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI 166 (559)
T PRK05563 88 MDVIEIDAASNNGVD-EIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATI 166 (559)
T ss_pred CCeEEeeccccCCHH-HHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHH
Confidence 0000000 01111 111222221 346668899999754 334444433333233444554 4443333322
Q ss_pred ccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHH
Q 042817 304 MEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAII 358 (922)
Q Consensus 304 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 358 (922)
.+....+++.+++.++....+...+...... --.+....|++.++|.+..+.
T Consensus 167 ~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~---i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 167 LSRCQRFDFKRISVEDIVERLKYILDKEGIE---YEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HhHheEEecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 1234578899999999988887766433211 124567788888888775443
No 160
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.56 E-value=0.0038 Score=75.15 Aligned_cols=47 Identities=26% Similarity=0.316 Sum_probs=39.9
Q ss_pred CCcccchhhHHHHHHHHhcc------CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 156 EPRIIGQESIFDDAWRCMIE------EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 156 ~~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+...+|.+..+++|+++|.. ....++.++|++|+||||+|+.++...
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999988862 234689999999999999999999876
No 161
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.51 E-value=0.00033 Score=85.56 Aligned_cols=154 Identities=15% Similarity=0.203 Sum_probs=87.8
Q ss_pred cccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCC--C-ceEEEEEeCCCCCHHHHHHHHHhhc
Q 042817 158 RIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHD--F-DIVIWVVVSKDLNLEKVQEDIGKKI 234 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--F-~~~~wv~~s~~~~~~~~~~~i~~~l 234 (922)
.++||+.+++++++.|......-+.++|++|+|||++|..++......... . +..+|.- +...+ ..
T Consensus 180 ~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l-----~~~~l----~a-- 248 (821)
T CHL00095 180 PVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL-----DIGLL----LA-- 248 (821)
T ss_pred CCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe-----eHHHH----hc--
Confidence 479999999999999976544556799999999999999999886211111 1 2334421 11111 11
Q ss_pred cCCcccccCCChhhhHHHHHHHh-cCCcEEEEEccCCCcc---------ccccccccCCCCCCCcEEEEEcCChhhhcc-
Q 042817 235 DMFSESWKNKSPVEKSCAIFKIL-SNKKFVLLLDDMWEPV---------DLTKVGVPIPNSTNASKVVFTTRYKEVCGK- 303 (922)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~---------~~~~l~~~~~~~~~gs~IivTtR~~~v~~~- 303 (922)
+. .+ ..+.++....+.+.+ ..++.+|++|++.... +...+..+....+ .-++|.+|...+....
T Consensus 249 g~---~~-~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~ey~~~i 323 (821)
T CHL00095 249 GT---KY-RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDEYRKHI 323 (821)
T ss_pred cC---CC-ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHHHHHHH
Confidence 00 01 112233333333333 3578999999996321 1112222211111 2456666665543211
Q ss_pred ------ccccceeecCCCCHHHHHHHHHHh
Q 042817 304 ------MEAHKKLRVECLTADDAWMLFKVK 327 (922)
Q Consensus 304 ------~~~~~~~~l~~L~~~ea~~Lf~~~ 327 (922)
......+.+...+.++...++...
T Consensus 324 e~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 324 EKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred hcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 112346788889999988887653
No 162
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.51 E-value=0.00089 Score=81.76 Aligned_cols=153 Identities=16% Similarity=0.148 Sum_probs=86.9
Q ss_pred cccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCC----Cc-eEEEEEeCCCCCHHHHHHHHHh
Q 042817 158 RIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHD----FD-IVIWVVVSKDLNLEKVQEDIGK 232 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----F~-~~~wv~~s~~~~~~~~~~~i~~ 232 (922)
.++||+.+++++++.|......-+.++|.+|+|||++|..++.... .... .. .+++++.+.- . .
T Consensus 179 ~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~-~~~vp~~l~~~~~~~l~l~~l------~----a 247 (857)
T PRK10865 179 PVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII-NGEVPEGLKGRRVLALDMGAL------V----A 247 (857)
T ss_pred cCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhh-cCCCchhhCCCEEEEEehhhh------h----h
Confidence 5799999999999999776555677999999999999999999872 1110 11 2233322211 0 0
Q ss_pred hccCCcccccCCChhhhHHHHHHHh--cCCcEEEEEccCCCcc---------ccccccccCCCCCCCcEEEEEcCChhhh
Q 042817 233 KIDMFSESWKNKSPVEKSCAIFKIL--SNKKFVLLLDDMWEPV---------DLTKVGVPIPNSTNASKVVFTTRYKEVC 301 (922)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~---------~~~~l~~~~~~~~~gs~IivTtR~~~v~ 301 (922)
.. . .....++..+.+.+.+ .+++.+|++|++.... +...+..+....+ .-++|-||...+..
T Consensus 248 g~-----~-~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g-~l~~IgaTt~~e~r 320 (857)
T PRK10865 248 GA-----K-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG-ELHCVGATTLDEYR 320 (857)
T ss_pred cc-----c-hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC-CCeEEEcCCCHHHH
Confidence 00 0 0112222233333322 2478999999997532 1122222222222 34566666655431
Q ss_pred cc-------ccccceeecCCCCHHHHHHHHHHhh
Q 042817 302 GK-------MEAHKKLRVECLTADDAWMLFKVKV 328 (922)
Q Consensus 302 ~~-------~~~~~~~~l~~L~~~ea~~Lf~~~~ 328 (922)
.. ......+.+...+.++...+++...
T Consensus 321 ~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 321 QYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 11 1122356677778899999886654
No 163
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.46 E-value=6e-05 Score=88.74 Aligned_cols=128 Identities=20% Similarity=0.302 Sum_probs=82.3
Q ss_pred ccceEEeeeccccccc--c--cccCCCCceEEEeccCccccc-chhhhccCCCceEEEccCCCCCcccCccccCcccCCe
Q 042817 516 KGVKRMSLMNNKIRNL--S--EPATCPHLLTLFLQNNRLSNI-TANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQY 590 (922)
Q Consensus 516 ~~l~~l~l~~~~~~~~--~--~~~~~~~L~~L~l~~~~l~~~-~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 590 (922)
.++++|++.+...-.- + -...+|+|++|.+.+-.+... ....+.++++|+.||+|++ +++.+ .++++|+||+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHH
Confidence 4788888877543211 0 125678888888887644322 2334667888888888888 77777 57888888888
Q ss_pred eeeccCCccccc--hhhccCCCCCEEeCCCCcccccc--Chh---hhCCCCCCCEEEeecCC
Q 042817 591 LNLSSTGIRVLP--EELKALKDLSYLNMERTSFVRRI--PRQ---LISNFPLLRVLRMLDCG 645 (922)
Q Consensus 591 L~L~~~~i~~lp--~~l~~l~~L~~L~l~~~~~l~~l--p~~---~i~~l~~L~~L~l~~~~ 645 (922)
|.+++=.+..-+ ..+-+|++|++||+|........ ... .-..||+|+.|+.++..
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 888776655432 35667888888888876532211 110 01347777777777654
No 164
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.46 E-value=0.0012 Score=74.25 Aligned_cols=152 Identities=15% Similarity=0.130 Sum_probs=87.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKIL 257 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 257 (922)
...+.|+|+.|+|||+||+++++... . ....+++++ ...+...+...+... . ...+++.+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~-~--~~~~v~yi~------~~~f~~~~~~~l~~~-------~----~~~f~~~~ 200 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR-E--SGGKILYVR------SELFTEHLVSAIRSG-------E----MQRFRQFY 200 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH-H--cCCCEEEee------HHHHHHHHHHHHhcc-------h----HHHHHHHc
Confidence 35688999999999999999999872 1 223345554 234444444444211 1 12334444
Q ss_pred cCCcEEEEEccCCCccc--c--ccccccCCC-CCCCcEEEEEcCCh---------hhhccccccceeecCCCCHHHHHHH
Q 042817 258 SNKKFVLLLDDMWEPVD--L--TKVGVPIPN-STNASKVVFTTRYK---------EVCGKMEAHKKLRVECLTADDAWML 323 (922)
Q Consensus 258 ~~kr~LlVlDdv~~~~~--~--~~l~~~~~~-~~~gs~IivTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~~L 323 (922)
+ +.-+|++||+..... + +.+...+.. ...|..||+||... .+...+..+..+.+.+++.++-..+
T Consensus 201 ~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~i 279 (445)
T PRK12422 201 R-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSF 279 (445)
T ss_pred c-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHH
Confidence 3 344888899865321 1 122211110 01345688888642 1223344456889999999999999
Q ss_pred HHHhhCCCCCCCCCChhHHHHHHHHHhCCc
Q 042817 324 FKVKVGEDTIDSHPEIPKHAQLVAKECGGL 353 (922)
Q Consensus 324 f~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 353 (922)
+.+++....... -++...-|++.+.+.
T Consensus 280 L~~k~~~~~~~l---~~evl~~la~~~~~d 306 (445)
T PRK12422 280 LERKAEALSIRI---EETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHHcCCCC---CHHHHHHHHHhcCCC
Confidence 988775433221 134555566666544
No 165
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.45 E-value=0.0013 Score=73.06 Aligned_cols=137 Identities=19% Similarity=0.164 Sum_probs=87.8
Q ss_pred chhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCccc
Q 042817 161 GQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSES 240 (922)
Q Consensus 161 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~ 240 (922)
-|...+.++.+.+..... ++.|+|+-++||||+++.+.... ... ++++..-+...-..
T Consensus 21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~---~~~---~iy~~~~d~~~~~~--------------- 78 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGL---LEE---IIYINFDDLRLDRI--------------- 78 (398)
T ss_pred hHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhC---Ccc---eEEEEecchhcchh---------------
Confidence 344556666666654433 99999999999999997777665 222 55554332211100
Q ss_pred ccCCChhhhHHHHHHHhcCCcEEEEEccCCCccccccccccCCCCCCCcEEEEEcCChhhhc-----c-ccccceeecCC
Q 042817 241 WKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPVDLTKVGVPIPNSTNASKVVFTTRYKEVCG-----K-MEAHKKLRVEC 314 (922)
Q Consensus 241 ~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTtR~~~v~~-----~-~~~~~~~~l~~ 314 (922)
...+....+...-..++..++||.|....+|+.....+.+.++. +|++|+-+..... . .+....+++.|
T Consensus 79 ----~l~d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~P 153 (398)
T COG1373 79 ----ELLDLLRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYP 153 (398)
T ss_pred ----hHHHHHHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECC
Confidence 00111111111112277899999999999999887777776666 8999988766532 1 23456789999
Q ss_pred CCHHHHHHHH
Q 042817 315 LTADDAWMLF 324 (922)
Q Consensus 315 L~~~ea~~Lf 324 (922)
|+..|...+-
T Consensus 154 lSF~Efl~~~ 163 (398)
T COG1373 154 LSFREFLKLK 163 (398)
T ss_pred CCHHHHHhhc
Confidence 9999987754
No 166
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.44 E-value=0.00083 Score=75.83 Aligned_cols=160 Identities=17% Similarity=0.156 Sum_probs=87.9
Q ss_pred cccchhhHHHHHHHHhcc-------------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhc--cCCCceEEEEEeCCCCC
Q 042817 158 RIIGQESIFDDAWRCMIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQE--RHDFDIVIWVVVSKDLN 222 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~F~~~~wv~~s~~~~ 222 (922)
.+.|.+..++++.+.+.- ...+-+.++|++|.|||++|+++++..... ...+....|+++...
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~-- 260 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP-- 260 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch--
Confidence 467899999888877531 133568899999999999999999987210 001223445554432
Q ss_pred HHHHHHHHHhhccCCcccccCCChhhhHHHHHHHh-cCCcEEEEEccCCCcc---------c-----cccccccCCC--C
Q 042817 223 LEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKIL-SNKKFVLLLDDMWEPV---------D-----LTKVGVPIPN--S 285 (922)
Q Consensus 223 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~---------~-----~~~l~~~~~~--~ 285 (922)
++ +...... ............++.. .+++++|+||+++... + +..+...+.. .
T Consensus 261 --eL----l~kyvGe----te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~ 330 (512)
T TIGR03689 261 --EL----LNKYVGE----TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES 330 (512)
T ss_pred --hh----cccccch----HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc
Confidence 11 1100000 0000111111222211 3478999999997521 1 1122222221 1
Q ss_pred CCCcEEEEEcCChhhhcc--c---cccceeecCCCCHHHHHHHHHHhhC
Q 042817 286 TNASKVVFTTRYKEVCGK--M---EAHKKLRVECLTADDAWMLFKVKVG 329 (922)
Q Consensus 286 ~~gs~IivTtR~~~v~~~--~---~~~~~~~l~~L~~~ea~~Lf~~~~~ 329 (922)
..+..||.||...+.... . .-+..+.++..+.++..++|..+..
T Consensus 331 ~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 331 LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred CCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 134456666655544221 1 2245689999999999999988764
No 167
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.44 E-value=0.0023 Score=68.88 Aligned_cols=95 Identities=7% Similarity=0.107 Sum_probs=59.0
Q ss_pred CCcEEEEEccCCCc--cccccccccCCCCCCCcEEEEEcCChh-hhcc-ccccceeecCCCCHHHHHHHHHHhhCCCCCC
Q 042817 259 NKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVFTTRYKE-VCGK-MEAHKKLRVECLTADDAWMLFKVKVGEDTID 334 (922)
Q Consensus 259 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 334 (922)
+++-++|+|+++.. .....+...+..-..++.+|+||.+.. +... .+.-..+.+.+++.+++.+.+.......
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~--- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPES--- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccC---
Confidence 34445678999864 333444333332234666777776653 3322 2234578999999999999887653111
Q ss_pred CCCChhHHHHHHHHHhCCchhHHHHH
Q 042817 335 SHPEIPKHAQLVAKECGGLPLAIITI 360 (922)
Q Consensus 335 ~~~~~~~~~~~i~~~c~glPLai~~~ 360 (922)
..+.+..++..++|.|..+..+
T Consensus 182 ----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 ----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ----ChHHHHHHHHHcCCCHHHHHHH
Confidence 1345667889999999766544
No 168
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.43 E-value=0.00034 Score=65.75 Aligned_cols=89 Identities=22% Similarity=0.097 Sum_probs=50.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHHhc
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILS 258 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 258 (922)
..+.|+|++|+||||+|+.++... ......+++++.+........... ....... ............+.+..+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~ 75 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL---GPPGGGVIYIDGEDILEEVLDQLL-LIIVGGK---KASGSGELRLRLALALAR 75 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc---CCCCCCEEEECCEEccccCHHHHH-hhhhhcc---CCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999987 222234566655544332222211 0000000 012222333334444444
Q ss_pred CC-cEEEEEccCCCccc
Q 042817 259 NK-KFVLLLDDMWEPVD 274 (922)
Q Consensus 259 ~k-r~LlVlDdv~~~~~ 274 (922)
.. ..++++|+++....
T Consensus 76 ~~~~~viiiDei~~~~~ 92 (148)
T smart00382 76 KLKPDVLILDEITSLLD 92 (148)
T ss_pred hcCCCEEEEECCcccCC
Confidence 44 49999999987543
No 169
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.42 E-value=0.0033 Score=72.54 Aligned_cols=170 Identities=15% Similarity=0.155 Sum_probs=91.6
Q ss_pred cccchhhHHHHHHHHhc---c---------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHH
Q 042817 158 RIIGQESIFDDAWRCMI---E---------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEK 225 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~ 225 (922)
+++|.+..++++.+.+. . ...+-+.++|++|+|||++|+++++.. ...| +.++. .+
T Consensus 56 di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~-----~~i~~----~~ 123 (495)
T TIGR01241 56 DVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPF-----FSISG----SD 123 (495)
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCe-----eeccH----HH
Confidence 57888877666554432 1 122357899999999999999999876 2232 22221 11
Q ss_pred HHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCcc----c------------cccccccCC--CCCC
Q 042817 226 VQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPV----D------------LTKVGVPIP--NSTN 287 (922)
Q Consensus 226 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----~------------~~~l~~~~~--~~~~ 287 (922)
+.... .......+...+.......+.+|+|||++... . +..+...+. ....
T Consensus 124 ~~~~~-----------~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 124 FVEMF-----------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred HHHHH-----------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 11110 01112222223333344577899999996521 0 011111111 1123
Q ss_pred CcEEEEEcCChhhhc-----cccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCch
Q 042817 288 ASKVVFTTRYKEVCG-----KMEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLP 354 (922)
Q Consensus 288 gs~IivTtR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 354 (922)
+-.||.||...+... .-.-+..+.++..+.++-.++|............ .....+++.+.|.-
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~----~~l~~la~~t~G~s 260 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD----VDLKAVARRTPGFS 260 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc----hhHHHHHHhCCCCC
Confidence 445666776544321 1123457888888888888888877654332211 22346777777643
No 170
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.41 E-value=0.014 Score=59.09 Aligned_cols=170 Identities=20% Similarity=0.226 Sum_probs=95.7
Q ss_pred CcccchhhHHHHHHHHhc-----cCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHH
Q 042817 157 PRIIGQESIFDDAWRCMI-----EEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIG 231 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 231 (922)
..|||.+..++++.=++. ++..--+-++|++|.||||||.-+++.. ...+. ++......-..-+..|+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em---gvn~k----~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL---GVNLK----ITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh---cCCeE----ecccccccChhhHHHHH
Confidence 368999988888765554 2455578899999999999999999998 22221 11111111111112222
Q ss_pred hhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCcc-c--------ccccccc-CCCCCCCcE-----------
Q 042817 232 KKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPV-D--------LTKVGVP-IPNSTNASK----------- 290 (922)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-~--------~~~l~~~-~~~~~~gs~----------- 290 (922)
..+. ..=.|.+|.+.... . .+++... .-..++++|
T Consensus 99 t~Le------------------------~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 99 TNLE------------------------EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred hcCC------------------------cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 2221 22234555554310 0 1111000 001122222
Q ss_pred EEEEcCChhhhccccc--cceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHH
Q 042817 291 VVFTTRYKEVCGKMEA--HKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITI 360 (922)
Q Consensus 291 IivTtR~~~v~~~~~~--~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 360 (922)
|=.|||.-.+..-+.. .-+.++..-+.+|-.++..+.+..-..+. .++-+.+|+++..|-|--..-+
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i---~~~~a~eIA~rSRGTPRIAnRL 223 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEI---DEEAALEIARRSRGTPRIANRL 223 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCC---ChHHHHHHHHhccCCcHHHHHH
Confidence 3358886655433221 34668888999999999988874333222 2567899999999999654433
No 171
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.40 E-value=0.00089 Score=82.16 Aligned_cols=153 Identities=14% Similarity=0.168 Sum_probs=87.8
Q ss_pred cccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCC----CceEEE-EEeCCCCCHHHHHHHHHh
Q 042817 158 RIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHD----FDIVIW-VVVSKDLNLEKVQEDIGK 232 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----F~~~~w-v~~s~~~~~~~~~~~i~~ 232 (922)
.++||+.++++++..|......-+.++|++|+|||++|..++.+.. .... ....+| +++ ..+. .
T Consensus 174 ~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~-~~~~p~~l~~~~~~~l~~------~~l~----a 242 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIV-NGDVPESLKNKRLLALDM------GALI----A 242 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHh-ccCCchhhcCCeEEEeeH------HHHh----h
Confidence 4799999999999999765555667899999999999999998862 1111 122222 221 1110 0
Q ss_pred hccCCcccccCCChhhhHHHHHHHhc--CCcEEEEEccCCCcc---------ccccccccCCCCCCCcEEEEEcCChhhh
Q 042817 233 KIDMFSESWKNKSPVEKSCAIFKILS--NKKFVLLLDDMWEPV---------DLTKVGVPIPNSTNASKVVFTTRYKEVC 301 (922)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~---------~~~~l~~~~~~~~~gs~IivTtR~~~v~ 301 (922)
+. . ...+.+.....+.+.+. +++.+|++|++.... +...+..+....+ .-++|-+|...+.-
T Consensus 243 --~~---~-~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt~~e~r 315 (852)
T TIGR03346 243 --GA---K-YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATTLDEYR 315 (852)
T ss_pred --cc---h-hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCcHHHHH
Confidence 00 0 01122233333333332 468999999997532 1112222222222 24566555544431
Q ss_pred c-------cccccceeecCCCCHHHHHHHHHHhh
Q 042817 302 G-------KMEAHKKLRVECLTADDAWMLFKVKV 328 (922)
Q Consensus 302 ~-------~~~~~~~~~l~~L~~~ea~~Lf~~~~ 328 (922)
. .......+.++..+.++...++....
T Consensus 316 ~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 316 KYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 1 11123467889999999999987654
No 172
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.39 E-value=0.00012 Score=86.20 Aligned_cols=139 Identities=22% Similarity=0.183 Sum_probs=86.7
Q ss_pred CCCceEEEeccCc--ccccchhhhccCCCceEEEccCCCCC-cccCccccCcccCCeeeeccCCccccchhhccCCCCCE
Q 042817 537 CPHLLTLFLQNNR--LSNITANFFQFMPSLKVLNLSNNFSL-REFPPGISKLISLQYLNLSSTGIRVLPEELKALKDLSY 613 (922)
Q Consensus 537 ~~~L~~L~l~~~~--l~~~~~~~~~~l~~L~~L~L~~~~~l-~~lp~~i~~L~~L~~L~L~~~~i~~lp~~l~~l~~L~~ 613 (922)
-.+|+.|++++.. ..+++...-..+|.|+.|.++|-... +++-.-..+++||..||+|+|+++.+ .++++|++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 4568888888762 22344444456788888888875221 12333345678888888888888888 78888888888
Q ss_pred EeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCceEEEEEech
Q 042817 614 LNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSVLSVCLESD 683 (922)
Q Consensus 614 L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~ 683 (922)
|.+.+-.+...-.-..+-+|++|++|+++........ ......++.-..|++|+.|+++....
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-------~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT-------KIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccch-------HHHHHHHHhcccCccccEEecCCcch
Confidence 8887654322111111567888888888875533200 01112333444578888888875543
No 173
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.38 E-value=0.00047 Score=63.97 Aligned_cols=22 Identities=50% Similarity=0.602 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 042817 181 IGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 181 i~I~G~gGiGKTtLa~~v~~~~ 202 (922)
|.|+|++|+||||+|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5689999999999999999997
No 174
>PRK08118 topology modulation protein; Reviewed
Probab=97.37 E-value=0.00011 Score=71.03 Aligned_cols=36 Identities=44% Similarity=0.714 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEE
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIW 214 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~w 214 (922)
+.|.|+|++|+||||||+.+++.......+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358899999999999999999997323356777776
No 175
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.35 E-value=0.00028 Score=67.20 Aligned_cols=102 Identities=24% Similarity=0.384 Sum_probs=48.9
Q ss_pred ceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccC-cccCCeeeeccCCccccch--hhccCCCCCEEeC
Q 042817 540 LLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISK-LISLQYLNLSSTGIRVLPE--ELKALKDLSYLNM 616 (922)
Q Consensus 540 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~-L~~L~~L~L~~~~i~~lp~--~l~~l~~L~~L~l 616 (922)
...++|.+|.+..++. |..++.|.+|.|++| .+..+-+.+.. +++|..|.|.+|+|.++-+ -+..+++|++|.+
T Consensus 44 ~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cceecccccchhhccc--CCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 3344445444433332 444555555555555 44443333332 3345555555555444321 2444556666665
Q ss_pred CCCccccccC---hhhhCCCCCCCEEEeecCC
Q 042817 617 ERTSFVRRIP---RQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 617 ~~~~~l~~lp---~~~i~~l~~L~~L~l~~~~ 645 (922)
-+|+. ..-+ ..++.++++|++|++.+..
T Consensus 121 l~Npv-~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 121 LGNPV-EHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCCch-hcccCceeEEEEecCcceEeehhhhh
Confidence 55542 1111 1235667777777776654
No 176
>PRK10536 hypothetical protein; Provisional
Probab=97.33 E-value=0.0033 Score=63.79 Aligned_cols=55 Identities=18% Similarity=0.203 Sum_probs=41.5
Q ss_pred cccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEE
Q 042817 158 RIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWV 215 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 215 (922)
.+.+|......++.++.+. .++.++|+.|.|||+||.++..+. ...+.|+.++-.
T Consensus 56 ~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~-l~~~~~~kIiI~ 110 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEA-LIHKDVDRIIVT 110 (262)
T ss_pred cccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHH-HhcCCeeEEEEe
Confidence 4677888888888888664 499999999999999999998864 223445544443
No 177
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.33 E-value=0.00066 Score=80.86 Aligned_cols=155 Identities=19% Similarity=0.266 Sum_probs=89.1
Q ss_pred cccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCC---CceEEEEEeCCCCCHHHHHHHHHhhc
Q 042817 158 RIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHD---FDIVIWVVVSKDLNLEKVQEDIGKKI 234 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---F~~~~wv~~s~~~~~~~~~~~i~~~l 234 (922)
.++||+.+++++++.|......-+.++|++|+|||++|+.++......... .+..+|.. +...+ ..
T Consensus 187 ~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la-- 255 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA-- 255 (758)
T ss_pred cCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc--
Confidence 479999999999998876444455689999999999999999875221111 13344421 11111 10
Q ss_pred cCCcccccCCChhhhHHHHHHHh-cCCcEEEEEccCCCc----------cccccccccCCCCCCCcEEEEEcCChhhhcc
Q 042817 235 DMFSESWKNKSPVEKSCAIFKIL-SNKKFVLLLDDMWEP----------VDLTKVGVPIPNSTNASKVVFTTRYKEVCGK 303 (922)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~----------~~~~~l~~~~~~~~~gs~IivTtR~~~v~~~ 303 (922)
+. . -..+.++..+.+.+.+ +.++.+|++|++... .+...+..++... ..-+||-+|...+....
T Consensus 256 G~---~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~E~~~~ 330 (758)
T PRK11034 256 GT---K-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEFSNI 330 (758)
T ss_pred cc---c-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChHHHHHH
Confidence 00 0 0112233333343434 346789999999742 1122222222222 23455655554442111
Q ss_pred -------ccccceeecCCCCHHHHHHHHHHhh
Q 042817 304 -------MEAHKKLRVECLTADDAWMLFKVKV 328 (922)
Q Consensus 304 -------~~~~~~~~l~~L~~~ea~~Lf~~~~ 328 (922)
......+.+++++.+++.+++....
T Consensus 331 ~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 331 FEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1123578999999999999998654
No 178
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0014 Score=68.23 Aligned_cols=196 Identities=17% Similarity=0.244 Sum_probs=112.9
Q ss_pred cccchhhHHHHHHHHhcc-------------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHH
Q 042817 158 RIIGQESIFDDAWRCMIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLE 224 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 224 (922)
.+=|-++.+++|.+...- +..+=|-+||++|.|||-||++|+++. ...| +.+... +
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~AtF-----IrvvgS---E 220 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DATF-----IRVVGS---E 220 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CceE-----EEeccH---H
Confidence 355788888888877541 244567899999999999999999987 3444 222221 1
Q ss_pred HHHHHHHhhccCCcccccCCChhhhHHHHHHHhc-CCcEEEEEccCCCcc----------------ccccccccCCCC--
Q 042817 225 KVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILS-NKKFVLLLDDMWEPV----------------DLTKVGVPIPNS-- 285 (922)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~----------------~~~~l~~~~~~~-- 285 (922)
-+++-| + ....+...+.+.-+ ..+..|++|.++... ..-++...+..+
T Consensus 221 lVqKYi----G---------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 221 LVQKYI----G---------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred HHHHHh----c---------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 122211 1 12233444555444 468999999986420 011222223222
Q ss_pred CCCcEEEEEcCChhhhcc--c---cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCch----hH
Q 042817 286 TNASKVVFTTRYKEVCGK--M---EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLP----LA 356 (922)
Q Consensus 286 ~~gs~IivTtR~~~v~~~--~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP----La 356 (922)
...-|||..|...++..- + .-+..++++.-+.+-=.++|.-++.......+-+++ .+++.|.|.- -|
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~sGAdlka 363 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGFSGADLKA 363 (406)
T ss_pred CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCCchHHHHH
Confidence 235689999987777432 1 235678888555566667787777665544444444 4555666554 34
Q ss_pred HHHHHhhhcc--C---CCHHHHHHHHHHHh
Q 042817 357 IITIGRAMSC--K---NKLEEWKHAVNVLK 381 (922)
Q Consensus 357 i~~~g~~L~~--~---~~~~~w~~~~~~l~ 381 (922)
+.+=|++++- . -+.+.+..+.++.-
T Consensus 364 ictEAGm~AiR~~R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 364 ICTEAGMFAIRERRDEVTMEDFLKAVEKVV 393 (406)
T ss_pred HHHHHhHHHHHhccCeecHHHHHHHHHHHH
Confidence 4555555442 2 23455555555443
No 179
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.29 E-value=0.0066 Score=65.03 Aligned_cols=196 Identities=12% Similarity=0.098 Sum_probs=107.4
Q ss_pred cccchhhHHHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhcc------------CCCceEEEEEeCCCCCHH
Q 042817 158 RIIGQESIFDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQER------------HDFDIVIWVVVSKDLNLE 224 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------~~F~~~~wv~~s~~~~~~ 224 (922)
.++|.+..++.+...+..+.+ +..-++|+.|+||+++|.++++..-... ....-..|+.-....+-.
T Consensus 5 ~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~ 84 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGK 84 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccccc
Confidence 579999999999999987765 7899999999999999999988752110 011112333211000000
Q ss_pred HHHHHHHhhccCCcccccCCChhhhHHHHHHHhc-----CCcEEEEEccCCCcc--ccccccccCCCCCCCcEEEEEcCC
Q 042817 225 KVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILS-----NKKFVLLLDDMWEPV--DLTKVGVPIPNSTNASKVVFTTRY 297 (922)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTtR~ 297 (922)
.+-..-++..+...........++ ++.+.+.+. +++-++|+|+++... ....+...+..-.+..-|++|+.-
T Consensus 85 ~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~ 163 (314)
T PRK07399 85 LITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSP 163 (314)
T ss_pred ccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence 000001111110000000111122 234444443 467799999997642 233333333222223334445444
Q ss_pred hhhhccc-cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHH
Q 042817 298 KEVCGKM-EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITI 360 (922)
Q Consensus 298 ~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 360 (922)
..+...+ +....+.+.++++++..+.+........ .......++..++|.|..+..+
T Consensus 164 ~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 164 ESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred HhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHHH
Confidence 4443332 3346889999999999999987643211 1112367889999999766543
No 180
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.29 E-value=0.0024 Score=73.13 Aligned_cols=155 Identities=14% Similarity=0.145 Sum_probs=91.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHHhc
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILS 258 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 258 (922)
..+.|+|..|.|||.|++++++... ....--.+++++. .++..++...+.. .. ...+++.++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~-~~~~g~~V~Yita------eef~~el~~al~~-------~~----~~~f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYAR-RLYPGTRVRYVSS------EEFTNEFINSIRD-------GK----GDSFRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEeeH------HHHHHHHHHHHHh-------cc----HHHHHHHhh
Confidence 4689999999999999999999872 1111234566643 3444444433321 11 112333343
Q ss_pred CCcEEEEEccCCCcc---ccc-cccccCCC-CCCCcEEEEEcCCh---------hhhccccccceeecCCCCHHHHHHHH
Q 042817 259 NKKFVLLLDDMWEPV---DLT-KVGVPIPN-STNASKVVFTTRYK---------EVCGKMEAHKKLRVECLTADDAWMLF 324 (922)
Q Consensus 259 ~kr~LlVlDdv~~~~---~~~-~l~~~~~~-~~~gs~IivTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf 324 (922)
+ -=+|||||+.... .|+ .+...+.. ...|..|||||+.. .+...+...-.+.+.+.+.+.-.+++
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHH
Confidence 3 3478899996531 121 12211111 12355688888853 22344456678999999999999999
Q ss_pred HHhhCCCCCCCCCChhHHHHHHHHHhCCchh
Q 042817 325 KVKVGEDTIDSHPEIPKHAQLVAKECGGLPL 355 (922)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 355 (922)
.+++.......+ +++..-|++.+.+..-
T Consensus 456 ~kka~~r~l~l~---~eVi~yLa~r~~rnvR 483 (617)
T PRK14086 456 RKKAVQEQLNAP---PEVLEFIASRISRNIR 483 (617)
T ss_pred HHHHHhcCCCCC---HHHHHHHHHhccCCHH
Confidence 988754432222 4566667776665543
No 181
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.28 E-value=5.6e-05 Score=87.84 Aligned_cols=109 Identities=24% Similarity=0.293 Sum_probs=47.2
Q ss_pred CCCceEEEeccC-ccccc-chhhhccCCCceEEEccCC-CCCcccC----ccccCcccCCeeeeccCC-ccc--cchhhc
Q 042817 537 CPHLLTLFLQNN-RLSNI-TANFFQFMPSLKVLNLSNN-FSLREFP----PGISKLISLQYLNLSSTG-IRV--LPEELK 606 (922)
Q Consensus 537 ~~~L~~L~l~~~-~l~~~-~~~~~~~l~~L~~L~L~~~-~~l~~lp----~~i~~L~~L~~L~L~~~~-i~~--lp~~l~ 606 (922)
+++|+.|.+.++ .+... .......+++|+.|++++| ......+ .....+.+|+.|+++++. ++. +..-..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 566666666665 22221 1223455666666666652 1111111 122334555556655554 331 111111
Q ss_pred cCCCCCEEeCCCCccccccC-hhhhCCCCCCCEEEeecCC
Q 042817 607 ALKDLSYLNMERTSFVRRIP-RQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 607 ~l~~L~~L~l~~~~~l~~lp-~~~i~~l~~L~~L~l~~~~ 645 (922)
.+++|++|.+.+|..+..-. ..+..++++|++|++++|.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 24555555555554211111 1112345555555555554
No 182
>CHL00176 ftsH cell division protein; Validated
Probab=97.25 E-value=0.0047 Score=72.36 Aligned_cols=169 Identities=15% Similarity=0.182 Sum_probs=93.5
Q ss_pred cccchhhHHHHHHH---HhccC---------CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHH
Q 042817 158 RIIGQESIFDDAWR---CMIEE---------QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEK 225 (922)
Q Consensus 158 ~~vGr~~~~~~l~~---~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~ 225 (922)
+++|.++.++++.+ ++... ..+-+.++|++|.|||++|+++++.. ...| +.++.. +
T Consensus 184 dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p~-----i~is~s----~ 251 (638)
T CHL00176 184 DIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVPF-----FSISGS----E 251 (638)
T ss_pred hccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCe-----eeccHH----H
Confidence 56787766655544 34321 13468899999999999999999876 2222 222211 1
Q ss_pred HHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCcc----------------ccccccccCCC--CCC
Q 042817 226 VQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPV----------------DLTKVGVPIPN--STN 287 (922)
Q Consensus 226 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------------~~~~l~~~~~~--~~~ 287 (922)
+.... ...........+.+.....+++|++||++... .+..+...+.. ...
T Consensus 252 f~~~~-----------~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~ 320 (638)
T CHL00176 252 FVEMF-----------VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNK 320 (638)
T ss_pred HHHHh-----------hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCC
Confidence 11100 00111222233444456788999999996421 01222211211 233
Q ss_pred CcEEEEEcCChhhhcc--c---cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCc
Q 042817 288 ASKVVFTTRYKEVCGK--M---EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGL 353 (922)
Q Consensus 288 gs~IivTtR~~~v~~~--~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 353 (922)
+-.||.||...+.... . .-+..+.++..+.++-.++++.++...... .......+++.+.|.
T Consensus 321 ~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~----~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 321 GVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS----PDVSLELIARRTPGF 387 (638)
T ss_pred CeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc----hhHHHHHHHhcCCCC
Confidence 5567777766544221 1 124577888888888888888876542211 123446677777763
No 183
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.25 E-value=0.00093 Score=77.52 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=39.2
Q ss_pred CcccchhhHHHHHHHHhccC-----CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 157 PRIIGQESIFDDAWRCMIEE-----QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~-----~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..++|.+..++++..++... ..+++.|+|++|+||||+++.++...
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999998652 34579999999999999999999876
No 184
>PRK08116 hypothetical protein; Validated
Probab=97.24 E-value=0.0006 Score=71.38 Aligned_cols=102 Identities=25% Similarity=0.265 Sum_probs=58.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHHhc
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILS 258 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 258 (922)
..+.++|.+|+|||.||.++++... . .-..+++++ ..+++..+....... ...+ ...+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~-~--~~~~v~~~~------~~~ll~~i~~~~~~~----~~~~----~~~~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI-E--KGVPVIFVN------FPQLLNRIKSTYKSS----GKED----ENEIIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH-H--cCCeEEEEE------HHHHHHHHHHHHhcc----cccc----HHHHHHHhc
Confidence 4588999999999999999999982 2 233456665 444555555443211 0111 123344455
Q ss_pred CCcEEEEEccCCC--cccccc--ccccCCC-CCCCcEEEEEcCCh
Q 042817 259 NKKFVLLLDDMWE--PVDLTK--VGVPIPN-STNASKVVFTTRYK 298 (922)
Q Consensus 259 ~kr~LlVlDdv~~--~~~~~~--l~~~~~~-~~~gs~IivTtR~~ 298 (922)
+-. ||||||+.. ..+|.. +...+.. ...|..+||||...
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 444 899999943 333322 2111111 12455689998743
No 185
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.23 E-value=0.00043 Score=65.98 Aligned_cols=98 Identities=32% Similarity=0.515 Sum_probs=41.4
Q ss_pred EEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCc--cccCcccCCeeeeccCC
Q 042817 520 RMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPP--GISKLISLQYLNLSSTG 597 (922)
Q Consensus 520 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~L~~~~ 597 (922)
.+++++|.+..+...+.++.|.+|.+.+|+++.+.+..-.-+++|..|.|.+| ++.++-+ .+..++.|++|.+-+|.
T Consensus 46 ~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 46 AIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred eecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeeecCCc
Confidence 34444444444444444444444444444444444443333344444444444 3333221 12334444444444444
Q ss_pred ccccch----hhccCCCCCEEeCCC
Q 042817 598 IRVLPE----ELKALKDLSYLNMER 618 (922)
Q Consensus 598 i~~lp~----~l~~l~~L~~L~l~~ 618 (922)
++..+. -+..+++|++||..+
T Consensus 125 v~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 125 VEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred hhcccCceeEEEEecCcceEeehhh
Confidence 432221 234444444444443
No 186
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.013 Score=68.72 Aligned_cols=105 Identities=24% Similarity=0.356 Sum_probs=67.9
Q ss_pred CcccchhhHHHHHHHHhcc---------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHH
Q 042817 157 PRIIGQESIFDDAWRCMIE---------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQ 227 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 227 (922)
..++|.+..++.+.+.+.. ....+.-.+|+.|||||.||++++... .+.=+..+-++.|.-..-..+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~DMSEy~EkHsV- 566 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRIDMSEYMEKHSV- 566 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceeechHHHHHHHHH-
Confidence 4679999999999888752 244577789999999999999999887 222245555555544332222
Q ss_pred HHHHhhccCCcccccCCChhhhHHHHHHHhcCCcE-EEEEccCCCc
Q 042817 228 EDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKF-VLLLDDMWEP 272 (922)
Q Consensus 228 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~ 272 (922)
.+-+|.+. .+-..+. .-.+-+.++.++| +|.||+|+..
T Consensus 567 ---SrLIGaPP-GYVGyee---GG~LTEaVRr~PySViLlDEIEKA 605 (786)
T COG0542 567 ---SRLIGAPP-GYVGYEE---GGQLTEAVRRKPYSVILLDEIEKA 605 (786)
T ss_pred ---HHHhCCCC-CCceecc---ccchhHhhhcCCCeEEEechhhhc
Confidence 22233322 1111111 2256677788888 8999999763
No 187
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.18 E-value=0.0085 Score=60.12 Aligned_cols=46 Identities=28% Similarity=0.343 Sum_probs=36.9
Q ss_pred CcccchhhHHHHHHHHh----ccCCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 157 PRIIGQESIFDDAWRCM----IEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..++|.|..++.+++-. ......-+-++|..|.|||++++++.+..
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 46899999888876543 33344567789999999999999999988
No 188
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.16 E-value=0.0066 Score=65.85 Aligned_cols=160 Identities=9% Similarity=0.052 Sum_probs=85.4
Q ss_pred cccc-hhhHHHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhcc
Q 042817 158 RIIG-QESIFDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (922)
Q Consensus 158 ~~vG-r~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (922)
.++| .+..++.+...+..+++ +..-++|+.|+||||+|+.+++..-. ....... .++.-..-+.+.....
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c-~~~~~~~-------~cg~C~~c~~~~~~~h 77 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFC-LERNGVE-------PCGTCTNCKRIDSGNH 77 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCC-CCCCCCC-------CCCcCHHHHHHhcCCC
Confidence 4567 77788888888876654 46789999999999999999887511 1101000 0000011111110000
Q ss_pred ----CCcccccCCChhhhHHHHHHHh-----cCCcEEEEEccCCCcc--ccccccccCCCCCCCcEEEEEcCChh-hhcc
Q 042817 236 ----MFSESWKNKSPVEKSCAIFKIL-----SNKKFVLLLDDMWEPV--DLTKVGVPIPNSTNASKVVFTTRYKE-VCGK 303 (922)
Q Consensus 236 ----~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTtR~~~-v~~~ 303 (922)
...........++.. .+.+.+ .+.+-++|+|+++... ....+...+..-..++.+|++|.+.. +...
T Consensus 78 pD~~~i~~~~~~i~id~ir-~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~T 156 (329)
T PRK08058 78 PDVHLVAPDGQSIKKDQIR-YLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPT 156 (329)
T ss_pred CCEEEeccccccCCHHHHH-HHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHH
Confidence 000000011112222 222222 2455679999997642 23344444433345666776666543 3332
Q ss_pred c-cccceeecCCCCHHHHHHHHHH
Q 042817 304 M-EAHKKLRVECLTADDAWMLFKV 326 (922)
Q Consensus 304 ~-~~~~~~~l~~L~~~ea~~Lf~~ 326 (922)
+ +....+++.+++.++..+.+..
T Consensus 157 IrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 157 ILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHhhceeeeCCCCCHHHHHHHHHH
Confidence 2 2346789999999999888864
No 189
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.15 E-value=0.003 Score=67.75 Aligned_cols=105 Identities=13% Similarity=0.123 Sum_probs=66.2
Q ss_pred HHHHHHHHhcc-CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCce-EEEEEeCC-CCCHHHHHHHHHhhccCCcccc
Q 042817 165 IFDDAWRCMIE-EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDI-VIWVVVSK-DLNLEKVQEDIGKKIDMFSESW 241 (922)
Q Consensus 165 ~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~-~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~ 241 (922)
...++++.+.. ..-..+.|+|.+|+|||||++.+++... ..+-+. ++|+.+.+ ..++.++.+.+...+.....+.
T Consensus 119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de 196 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDR 196 (380)
T ss_pred hhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCC
Confidence 44567777764 3335679999999999999999999872 223344 36666554 4568889999888776533110
Q ss_pred cCC---ChhhhHHHHHHHh--cCCcEEEEEccCCC
Q 042817 242 KNK---SPVEKSCAIFKIL--SNKKFVLLLDDMWE 271 (922)
Q Consensus 242 ~~~---~~~~~~~~l~~~l--~~kr~LlVlDdv~~ 271 (922)
... ........+.+++ ++++++||+|++..
T Consensus 197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 110 1111222233333 57999999999843
No 190
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.13 E-value=0.011 Score=59.01 Aligned_cols=180 Identities=18% Similarity=0.243 Sum_probs=101.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEe-CCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHH
Q 042817 176 EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVV-SKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIF 254 (922)
Q Consensus 176 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~-s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 254 (922)
++.+++.++|.-|.|||.++++..... . + +.++-|.+ .+..+...+...|...+.............+....+.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~-~-~---d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASL-N-E---DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhc-C-C---CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 455799999999999999999665554 1 1 11222333 3345667788888888765211101112223333444
Q ss_pred HHh-cCCc-EEEEEccCCCc--cccccccccC---CCCCCCcEEEEEcCChhh--------hcccc-ccce-eecCCCCH
Q 042817 255 KIL-SNKK-FVLLLDDMWEP--VDLTKVGVPI---PNSTNASKVVFTTRYKEV--------CGKME-AHKK-LRVECLTA 317 (922)
Q Consensus 255 ~~l-~~kr-~LlVlDdv~~~--~~~~~l~~~~---~~~~~gs~IivTtR~~~v--------~~~~~-~~~~-~~l~~L~~ 317 (922)
... +++| ..+++||..+. ..++.++-.. .+...--+|+..-. +++ ..... .... |++.|++.
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gq-p~L~~~lr~~~l~e~~~R~~ir~~l~P~~~ 202 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQ-PKLRPRLRLPVLRELEQRIDIRIELPPLTE 202 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCC-cccchhhchHHHHhhhheEEEEEecCCcCh
Confidence 443 4677 99999998764 2222221111 11111112222211 111 11111 1223 89999999
Q ss_pred HHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHHH
Q 042817 318 DDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITIG 361 (922)
Q Consensus 318 ~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 361 (922)
++....+..+..+...+.+---.+....|.....|.|.+|..++
T Consensus 203 ~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 203 AETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred HHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHH
Confidence 98888888776544322222335667888999999999998665
No 191
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.07 E-value=0.00087 Score=67.66 Aligned_cols=37 Identities=38% Similarity=0.551 Sum_probs=31.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCC
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSK 219 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 219 (922)
.++|+|..|.||||+++.+.... .+.|.++++++-..
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~~~ 51 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITPEY 51 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEecCC
Confidence 57899999999999999999887 67888888776433
No 192
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.05 E-value=7.8e-05 Score=66.17 Aligned_cols=88 Identities=28% Similarity=0.421 Sum_probs=79.1
Q ss_pred ccceEEeeecccccccccc--cCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeee
Q 042817 516 KGVKRMSLMNNKIRNLSEP--ATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNL 593 (922)
Q Consensus 516 ~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L 593 (922)
.++...++++|.++++|+. ..++.+++|++.+|.+..+|.+ +..|+.||.|+++.| .+...|.-|-.|.+|-+|+.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccC-ccccchHHHHHHHhHHHhcC
Confidence 3678889999999998876 5677899999999999999998 999999999999999 89999999999999999999
Q ss_pred ccCCccccchhh
Q 042817 594 SSTGIRVLPEEL 605 (922)
Q Consensus 594 ~~~~i~~lp~~l 605 (922)
.++.+.++|-.+
T Consensus 131 ~~na~~eid~dl 142 (177)
T KOG4579|consen 131 PENARAEIDVDL 142 (177)
T ss_pred CCCccccCcHHH
Confidence 999998888653
No 193
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0063 Score=67.55 Aligned_cols=185 Identities=14% Similarity=0.141 Sum_probs=99.8
Q ss_pred cccchhhHHHHHHHHhcc------------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHH
Q 042817 158 RIIGQESIFDDAWRCMIE------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEK 225 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~ 225 (922)
++=|.+..+.++.+.+.- ...+=|-++|++|.|||.||++++++. .-.| +.++..
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel---~vPf-----~~isAp----- 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL---GVPF-----LSISAP----- 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc---CCce-----Eeecch-----
Confidence 456788888888777642 134567899999999999999999998 3333 233222
Q ss_pred HHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCc---cc-------------cccccccCC---CCC
Q 042817 226 VQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEP---VD-------------LTKVGVPIP---NST 286 (922)
Q Consensus 226 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---~~-------------~~~l~~~~~---~~~ 286 (922)
+|...+ ...+++.+.+...+.-..-++++++|+++-. .+ +-..+.-+. ..+
T Consensus 258 ---eivSGv-------SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g 327 (802)
T KOG0733|consen 258 ---EIVSGV-------SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKG 327 (802)
T ss_pred ---hhhccc-------CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCC
Confidence 222211 2233444444444455678999999999742 11 111111111 113
Q ss_pred CCcEEEEEcCChhhhc----ccc-ccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHHH
Q 042817 287 NASKVVFTTRYKEVCG----KME-AHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITIG 361 (922)
Q Consensus 287 ~gs~IivTtR~~~v~~----~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 361 (922)
.+--||-+|..++... ..+ -++.|.+.--++..-.+++...+.+-.....-++..+|+.-=...|-.-.|+...|
T Consensus 328 ~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~A 407 (802)
T KOG0733|consen 328 DPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREA 407 (802)
T ss_pred CCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHH
Confidence 3333444455454422 112 24567777766666666776665443333334444433332222233345666555
Q ss_pred hhhc
Q 042817 362 RAMS 365 (922)
Q Consensus 362 ~~L~ 365 (922)
+..+
T Consensus 408 a~vA 411 (802)
T KOG0733|consen 408 AFVA 411 (802)
T ss_pred HHHH
Confidence 5544
No 194
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.04 E-value=0.0036 Score=68.06 Aligned_cols=134 Identities=17% Similarity=0.198 Sum_probs=82.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCc--eEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFD--IVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIF 254 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 254 (922)
....+.|+|..|.|||.|++++.+.. ..... .+++++ .+.........+.. ...+..+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~---~~~~~~a~v~y~~------se~f~~~~v~a~~~-----------~~~~~Fk 171 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEA---LANGPNARVVYLT------SEDFTNDFVKALRD-----------NEMEKFK 171 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHH---HhhCCCceEEecc------HHHHHHHHHHHHHh-----------hhHHHHH
Confidence 36799999999999999999999998 23333 344443 23333333333321 1123444
Q ss_pred HHhcCCcEEEEEccCCCccc---c-ccccccCCC-CCCCcEEEEEcCChh---------hhccccccceeecCCCCHHHH
Q 042817 255 KILSNKKFVLLLDDMWEPVD---L-TKVGVPIPN-STNASKVVFTTRYKE---------VCGKMEAHKKLRVECLTADDA 320 (922)
Q Consensus 255 ~~l~~kr~LlVlDdv~~~~~---~-~~l~~~~~~-~~~gs~IivTtR~~~---------v~~~~~~~~~~~l~~L~~~ea 320 (922)
+.. .-=++++||++-... | +++...+.. ...|-.||+|++... +.+.+...-++++.+.+.+..
T Consensus 172 ~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r 249 (408)
T COG0593 172 EKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETR 249 (408)
T ss_pred Hhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHH
Confidence 544 344899999965322 2 122222211 123347999987533 334455667899999999999
Q ss_pred HHHHHHhhCCCC
Q 042817 321 WMLFKVKVGEDT 332 (922)
Q Consensus 321 ~~Lf~~~~~~~~ 332 (922)
..++.+++....
T Consensus 250 ~aiL~kka~~~~ 261 (408)
T COG0593 250 LAILRKKAEDRG 261 (408)
T ss_pred HHHHHHHHHhcC
Confidence 999988775544
No 195
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.03 E-value=0.018 Score=61.51 Aligned_cols=176 Identities=11% Similarity=0.048 Sum_probs=95.0
Q ss_pred hHHHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhcc-------
Q 042817 164 SIFDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKID------- 235 (922)
Q Consensus 164 ~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~------- 235 (922)
...+++...+..+.+ ..+-++|+.|+||+++|..+++..-. .....+ .... -.+.+. .-.
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC-~~~~~~-------~~c~---~c~~~~-~g~HPD~~~i 78 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLA-SGPDPA-------AAQR---TRQLIA-AGTHPDLQLV 78 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhC-CCCCCC-------Ccch---HHHHHh-cCCCCCEEEE
Confidence 345667777766554 46889999999999999999887621 110100 0000 000010 000
Q ss_pred --CCcccc----cCCChhhhHHHHHHHh-----cCCcEEEEEccCCCcc--ccccccccCCCCCCCcEEEEEcCC-hhhh
Q 042817 236 --MFSESW----KNKSPVEKSCAIFKIL-----SNKKFVLLLDDMWEPV--DLTKVGVPIPNSTNASKVVFTTRY-KEVC 301 (922)
Q Consensus 236 --~~~~~~----~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTtR~-~~v~ 301 (922)
.+.+.. .....+ .+..+.+.+ .+++-++|+|+++... .-..+...+..-..++.+|++|.+ ..+.
T Consensus 79 ~~~p~~~~~k~~~~I~id-qIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lL 157 (319)
T PRK08769 79 SFIPNRTGDKLRTEIVIE-QVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLP 157 (319)
T ss_pred ecCCCcccccccccccHH-HHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCc
Confidence 000000 000111 122233333 2456799999998642 222332233222346666666654 4444
Q ss_pred ccc-cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHHH
Q 042817 302 GKM-EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITIG 361 (922)
Q Consensus 302 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 361 (922)
..+ +.-..+.+.+++.+++.+.+... + . ....+..++..++|.|+.+..+.
T Consensus 158 pTIrSRCq~i~~~~~~~~~~~~~L~~~-~-~-------~~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 158 ATIRSRCQRLEFKLPPAHEALAWLLAQ-G-V-------SERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred hHHHhhheEeeCCCcCHHHHHHHHHHc-C-C-------ChHHHHHHHHHcCCCHHHHHHHh
Confidence 332 23457899999999998888643 1 1 12346778999999998765443
No 196
>PRK07261 topology modulation protein; Provisional
Probab=97.00 E-value=0.002 Score=62.60 Aligned_cols=67 Identities=19% Similarity=0.360 Sum_probs=42.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHHhcC
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSN 259 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 259 (922)
.|.|+|++|+||||||+.+........-+.|...|-.. +...+.++....+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~ 58 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-----------------------WQERDDDDMIADISNFLLK 58 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-----------------------cccCCHHHHHHHHHHHHhC
Confidence 48899999999999999998775211224455555211 1223344555566666766
Q ss_pred CcEEEEEccCCC
Q 042817 260 KKFVLLLDDMWE 271 (922)
Q Consensus 260 kr~LlVlDdv~~ 271 (922)
.+ .|+|+.-.
T Consensus 59 ~~--wIidg~~~ 68 (171)
T PRK07261 59 HD--WIIDGNYS 68 (171)
T ss_pred CC--EEEcCcch
Confidence 66 67788743
No 197
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.95 E-value=0.0057 Score=58.80 Aligned_cols=42 Identities=26% Similarity=0.328 Sum_probs=33.2
Q ss_pred chhhHHHHHHHHhccCCee-EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 161 GQESIFDDAWRCMIEEQVG-IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 161 Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
|.+..++.+.+.+..+... .+-++|+.|+||+|+|..+++..
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~l 43 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARAL 43 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHH
Confidence 5667778888888776554 68999999999999999998876
No 198
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.93 E-value=0.0021 Score=62.50 Aligned_cols=68 Identities=21% Similarity=0.215 Sum_probs=50.6
Q ss_pred CcccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHH
Q 042817 157 PRIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEK 225 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~ 225 (922)
.++||-|+.++++.-.-.+++++-+.|.||+|+||||-+..+++.. --...-+.+.-.+.|+...+.-
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~L-LG~~~ke~vLELNASdeRGIDv 94 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLAREL-LGDSYKEAVLELNASDERGIDV 94 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHH-hChhhhhHhhhccCccccccHH
Confidence 3689999999998888888889999999999999999999999887 2112224454455554444333
No 199
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.017 Score=63.18 Aligned_cols=143 Identities=21% Similarity=0.204 Sum_probs=90.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHH-
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFK- 255 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~- 255 (922)
....+.+.|++|.|||+||..++..- .|..+=-++ .++ ....++......+.+
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S-----~FPFvKiiS------pe~---------------miG~sEsaKc~~i~k~ 590 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSS-----DFPFVKIIS------PED---------------MIGLSESAKCAHIKKI 590 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhc-----CCCeEEEeC------hHH---------------ccCccHHHHHHHHHHH
Confidence 45577889999999999999988764 565443222 111 122233333334443
Q ss_pred ---HhcCCcEEEEEccCCCccccccccccC---------------CCCCCCcEEEEEcCChhhhccccc----cceeecC
Q 042817 256 ---ILSNKKFVLLLDDMWEPVDLTKVGVPI---------------PNSTNASKVVFTTRYKEVCGKMEA----HKKLRVE 313 (922)
Q Consensus 256 ---~l~~kr~LlVlDdv~~~~~~~~l~~~~---------------~~~~~gs~IivTtR~~~v~~~~~~----~~~~~l~ 313 (922)
..+..--.||+||++...+|-.++..+ |..++.--|+-||....+...|+- ...|.++
T Consensus 591 F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vp 670 (744)
T KOG0741|consen 591 FEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVP 670 (744)
T ss_pred HHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecC
Confidence 445667799999998877776665443 233334446667888888877753 4578899
Q ss_pred CCCH-HHHHHHHHHhh-CCCCCCCCCChhHHHHHHHHHh
Q 042817 314 CLTA-DDAWMLFKVKV-GEDTIDSHPEIPKHAQLVAKEC 350 (922)
Q Consensus 314 ~L~~-~ea~~Lf~~~~-~~~~~~~~~~~~~~~~~i~~~c 350 (922)
.++. ++..+.++..- +. +.+.+.++++...+|
T Consensus 671 nl~~~~~~~~vl~~~n~fs-----d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 671 NLTTGEQLLEVLEELNIFS-----DDEVRAIAEQLLSKK 704 (744)
T ss_pred ccCchHHHHHHHHHccCCC-----cchhHHHHHHHhccc
Confidence 8876 77777776543 22 234455666666665
No 200
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.84 E-value=0.037 Score=59.26 Aligned_cols=177 Identities=7% Similarity=0.011 Sum_probs=95.0
Q ss_pred HHHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhcc-----CCc
Q 042817 165 IFDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKID-----MFS 238 (922)
Q Consensus 165 ~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~-----~~~ 238 (922)
..+.+.+.+..+.+ ..+-++|+.|+||+++|++++...-. ..... ...++.-..-+.+...-. ...
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC-~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMC-QTPQG-------DQPCGQCHSCHLFQAGNHPDFHILEP 81 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcC-CCCCC-------CCCCCCCHHHHHHhcCCCCCEEEEcc
Confidence 34566666666544 57779999999999999999887621 11110 001111111111111000 000
Q ss_pred ccccCCChhhhHHHHHHHh-----cCCcEEEEEccCCCcc--ccccccccCCCCCCCcEEEEEcCCh-hhhccc-cccce
Q 042817 239 ESWKNKSPVEKSCAIFKIL-----SNKKFVLLLDDMWEPV--DLTKVGVPIPNSTNASKVVFTTRYK-EVCGKM-EAHKK 309 (922)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTtR~~-~v~~~~-~~~~~ 309 (922)
........++. ..+.+.+ .+++-.+|+|+++... ....+...+..-..++.+|++|.+. .+...+ +.-..
T Consensus 82 ~~~~~I~id~i-R~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~ 160 (325)
T PRK06871 82 IDNKDIGVDQV-REINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQT 160 (325)
T ss_pred ccCCCCCHHHH-HHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceE
Confidence 00001112222 2233333 2566688899998652 3333433333334456666666654 444332 23468
Q ss_pred eecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHH
Q 042817 310 LRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAII 358 (922)
Q Consensus 310 ~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 358 (922)
+.+.+++.++..+.+....... ...+...+..++|.|+.+.
T Consensus 161 ~~~~~~~~~~~~~~L~~~~~~~--------~~~~~~~~~l~~g~p~~A~ 201 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQSSAE--------ISEILTALRINYGRPLLAL 201 (325)
T ss_pred EeCCCCCHHHHHHHHHHHhccC--------hHHHHHHHHHcCCCHHHHH
Confidence 8999999999998887654211 1235667888999996443
No 201
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.83 E-value=0.019 Score=60.21 Aligned_cols=56 Identities=23% Similarity=0.286 Sum_probs=36.6
Q ss_pred hHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHH
Q 042817 164 SIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQ 227 (922)
Q Consensus 164 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 227 (922)
..++++..++..+ .-|-+.|++|+|||++|+++++.. ... .+.+++....+..+++
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l---g~~---~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR---DRP---VMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh---CCC---EEEEeCCccCCHHHHh
Confidence 3445555555443 355689999999999999999754 222 3556666655555443
No 202
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.82 E-value=0.0088 Score=67.80 Aligned_cols=172 Identities=14% Similarity=0.069 Sum_probs=89.9
Q ss_pred cccchhhHHHHHHHHh---cc-------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHH
Q 042817 158 RIIGQESIFDDAWRCM---IE-------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQ 227 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L---~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 227 (922)
++.|.+..++.+.+.. .. ...+-|-++|++|.|||.+|+++++.. ...| +-++.+.
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~---~~l~~~~-------- 294 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW---QLPL---LRLDVGK-------- 294 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEEhHH--------
Confidence 5678776666554421 11 133568899999999999999999987 3332 2222111
Q ss_pred HHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCccc----c----------ccccccCCCCCCCcEEEE
Q 042817 228 EDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPVD----L----------TKVGVPIPNSTNASKVVF 293 (922)
Q Consensus 228 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----~----------~~l~~~~~~~~~gs~Iiv 293 (922)
+... +...+...+...+...-...+++|++|+++.... . ..+...+.....+--||.
T Consensus 295 --l~~~-------~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIa 365 (489)
T CHL00195 295 --LFGG-------IVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVA 365 (489)
T ss_pred --hccc-------ccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEE
Confidence 1110 0111122222222222235789999999974211 0 001111112223344666
Q ss_pred EcCChhhhc-----cccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCch
Q 042817 294 TTRYKEVCG-----KMEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLP 354 (922)
Q Consensus 294 TtR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 354 (922)
||.+.+... .-.-+..+.++..+.++-.++|............. ......+++.+.|.-
T Consensus 366 TTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~--~~dl~~La~~T~GfS 429 (489)
T CHL00195 366 TANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK--KYDIKKLSKLSNKFS 429 (489)
T ss_pred ecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc--ccCHHHHHhhcCCCC
Confidence 776554321 11234578888889999999998776543211100 112455666666554
No 203
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.78 E-value=0.0017 Score=69.36 Aligned_cols=45 Identities=27% Similarity=0.370 Sum_probs=40.3
Q ss_pred cccchhhHHHHHHHHhcc------CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 158 RIIGQESIFDDAWRCMIE------EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.++|.++.++++++++.. ...+++.++|++|.||||||+++++..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999864 245799999999999999999999988
No 204
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.78 E-value=0.00064 Score=67.79 Aligned_cols=59 Identities=20% Similarity=0.350 Sum_probs=24.7
Q ss_pred cccCCeeeeccC--Ccc-ccchhhccCCCCCEEeCCCCcc--ccccChhhhCCCCCCCEEEeecCC
Q 042817 585 LISLQYLNLSST--GIR-VLPEELKALKDLSYLNMERTSF--VRRIPRQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 585 L~~L~~L~L~~~--~i~-~lp~~l~~l~~L~~L~l~~~~~--l~~lp~~~i~~l~~L~~L~l~~~~ 645 (922)
|++|++|.++.| ++. .++.-..++++|++|++++|.. +..+++ +..+.+|..|++++|.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENLKSLDLFNCS 127 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcchhhhhcccCC
Confidence 444444444444 222 2333333344555555554431 122222 3444445555555544
No 205
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.76 E-value=0.014 Score=62.80 Aligned_cols=36 Identities=28% Similarity=0.395 Sum_probs=28.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEe
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVV 217 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~ 217 (922)
.-+.++|..|+|||.||.++++... ... ..++++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~--~~g-~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL--DRG-KSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH--HCC-CeEEEEEH
Confidence 6799999999999999999999972 222 35666654
No 206
>PRK08181 transposase; Validated
Probab=96.76 E-value=0.002 Score=67.06 Aligned_cols=105 Identities=15% Similarity=0.104 Sum_probs=56.3
Q ss_pred HHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhH
Q 042817 171 RCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKS 250 (922)
Q Consensus 171 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 250 (922)
+|+.. ..-+.++|++|+|||.||.++.+... .....++|++ ..++...+..... ......
T Consensus 101 ~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a~---~~g~~v~f~~------~~~L~~~l~~a~~-------~~~~~~-- 160 (269)
T PRK08181 101 SWLAK--GANLLLFGPPGGGKSHLAAAIGLALI---ENGWRVLFTR------TTDLVQKLQVARR-------ELQLES-- 160 (269)
T ss_pred HHHhc--CceEEEEecCCCcHHHHHHHHHHHHH---HcCCceeeee------HHHHHHHHHHHHh-------CCcHHH--
Confidence 45532 34589999999999999999999872 2223455554 3455555543211 111111
Q ss_pred HHHHHHhcCCcEEEEEccCCCc--ccc--ccccccCCCCCCCcEEEEEcCCh
Q 042817 251 CAIFKILSNKKFVLLLDDMWEP--VDL--TKVGVPIPNSTNASKVVFTTRYK 298 (922)
Q Consensus 251 ~~l~~~l~~kr~LlVlDdv~~~--~~~--~~l~~~~~~~~~gs~IivTtR~~ 298 (922)
+.+.+. +.=||||||+... .++ ..+...+.....+..+||||...
T Consensus 161 --~l~~l~-~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 161 --AIAKLD-KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred --HHHHHh-cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 222222 3349999999543 111 11222121111123588888754
No 207
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.76 E-value=0.013 Score=71.12 Aligned_cols=170 Identities=15% Similarity=0.185 Sum_probs=93.5
Q ss_pred cccchhhHHHHHHHHhcc-------------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHH
Q 042817 158 RIIGQESIFDDAWRCMIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLE 224 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 224 (922)
.+.|.+..++++.+.+.- ...+-+.++|++|.|||++|+++++.. ...| +.+...
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~---~~~f-----i~v~~~---- 521 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES---GANF-----IAVRGP---- 521 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEehH----
Confidence 467888877777665431 123457889999999999999999987 3333 222211
Q ss_pred HHHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCccc--------------cccccccCCC--CCCC
Q 042817 225 KVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPVD--------------LTKVGVPIPN--STNA 288 (922)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--------------~~~l~~~~~~--~~~g 288 (922)
+ +... +.......+...+...-+..+.+|+||+++.... ...+...+.. ...+
T Consensus 522 ~----l~~~-------~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 522 E----ILSK-------WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred H----Hhhc-------ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 1 1111 1111222222222223345789999999864210 1112112211 1234
Q ss_pred cEEEEEcCChhhhcc--c---cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCch
Q 042817 289 SKVVFTTRYKEVCGK--M---EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLP 354 (922)
Q Consensus 289 s~IivTtR~~~v~~~--~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 354 (922)
--||.||...+.... . .-+..+.++..+.++-.++|.............+ ...+++.+.|.-
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 456667766554321 1 2345788888888888889876654333222222 355667777654
No 208
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.75 E-value=0.0029 Score=62.52 Aligned_cols=52 Identities=19% Similarity=0.251 Sum_probs=36.0
Q ss_pred hhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEE
Q 042817 162 QESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVV 216 (922)
Q Consensus 162 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 216 (922)
+..+-...++.|. ...++.+.|++|.|||.||.+.+-+. ...+.|+.++++.
T Consensus 5 ~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~R 56 (205)
T PF02562_consen 5 KNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITR 56 (205)
T ss_dssp -SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE
T ss_pred CCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEe
Confidence 4444555666665 44699999999999999999988776 4458888888875
No 209
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.73 E-value=0.076 Score=57.78 Aligned_cols=202 Identities=13% Similarity=0.178 Sum_probs=122.2
Q ss_pred hhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHH-HHHHHHhhhccCCCceEEEEEeCCCC---CHHHHHHHHHhhccCC
Q 042817 162 QESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLL-KQLNNKLCQERHDFDIVIWVVVSKDL---NLEKVQEDIGKKIDMF 237 (922)
Q Consensus 162 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~F~~~~wv~~s~~~---~~~~~~~~i~~~l~~~ 237 (922)
|.+.+++|..||.+..-..|.|.||-|.||+.|+ .++..+. +.++.++|.+-. +-..+...++.++|.-
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r-------~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR-------KNVLVIDCDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC-------CCEEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence 5677899999999877789999999999999999 6666654 126677655432 3345555555555321
Q ss_pred c-----------------------ccccCCChhhhHHHH-------HH-------------------Hhc---CCcEEEE
Q 042817 238 S-----------------------ESWKNKSPVEKSCAI-------FK-------------------ILS---NKKFVLL 265 (922)
Q Consensus 238 ~-----------------------~~~~~~~~~~~~~~l-------~~-------------------~l~---~kr~LlV 265 (922)
. ..+......++.+.+ ++ +|. .+|=+||
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 1 011122222222221 11 010 1255899
Q ss_pred EccCCCcccc-----c---cccccCCCCCCCcEEEEEcCChhhhc----cc--cccceeecCCCCHHHHHHHHHHhhCCC
Q 042817 266 LDDMWEPVDL-----T---KVGVPIPNSTNASKVVFTTRYKEVCG----KM--EAHKKLRVECLTADDAWMLFKVKVGED 331 (922)
Q Consensus 266 lDdv~~~~~~-----~---~l~~~~~~~~~gs~IivTtR~~~v~~----~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 331 (922)
+||.....+- + ++...+- ..+-.+||++|-+..... .+ ...+.+.+...+++-|.+....+....
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa~Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAASLV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDED 232 (431)
T ss_pred EcchhccCcccchHHHHHHHHHHHHH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccc
Confidence 9999653211 1 1111121 134468999998766543 22 234678999999999999998877543
Q ss_pred CCC------------CC-----CChhHHHHHHHHHhCCchhHHHHHHhhhccCCCHH
Q 042817 332 TID------------SH-----PEIPKHAQLVAKECGGLPLAIITIGRAMSCKNKLE 371 (922)
Q Consensus 332 ~~~------------~~-----~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~ 371 (922)
... .. ..........++..||=-.-+..+++.++.+.+++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 233 TEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred ccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 100 00 12344456677788888888888888888765543
No 210
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.71 E-value=0.0014 Score=59.70 Aligned_cols=23 Identities=43% Similarity=0.684 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+|.|.|++|+||||+|+.+++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999986
No 211
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.71 E-value=0.0052 Score=60.97 Aligned_cols=88 Identities=19% Similarity=0.239 Sum_probs=52.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCC-CCHHHHHHHHHhhccCCcccc-cCCChhhhHHHHHHH
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKD-LNLEKVQEDIGKKIDMFSESW-KNKSPVEKSCAIFKI 256 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~~ 256 (922)
++|.++|+.|+||||.+.+++... ..+ -..+..++.... ....+-++..++.++.+.... ...++.+......+.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~-~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARL-KLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH-HHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHH-hhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 689999999999999999888887 222 445666765432 234566777888887653221 122344444333333
Q ss_pred hcCCc-EEEEEccC
Q 042817 257 LSNKK-FVLLLDDM 269 (922)
Q Consensus 257 l~~kr-~LlVlDdv 269 (922)
.+.++ =++++|=.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 33333 37777765
No 212
>PRK04296 thymidine kinase; Provisional
Probab=96.71 E-value=0.0018 Score=64.20 Aligned_cols=114 Identities=15% Similarity=0.036 Sum_probs=62.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHHhc
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILS 258 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 258 (922)
.++.|+|..|.||||+|..++.+.. .+-..++.+. ..++.+.....++++++............+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~---~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE---ERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH---HcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 4788999999999999999888872 2223333332 2112222234456666543221112233444444444 23
Q ss_pred CCcEEEEEccCCCc--cccccccccCCCCCCCcEEEEEcCChhh
Q 042817 259 NKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVFTTRYKEV 300 (922)
Q Consensus 259 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~~~v 300 (922)
++.-+||+|.+.-. ++..++...+ ...|..||+|.++.+.
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTDF 118 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCccc
Confidence 34559999999432 2122222221 2457789999987543
No 213
>PRK12377 putative replication protein; Provisional
Probab=96.70 E-value=0.0079 Score=61.81 Aligned_cols=75 Identities=25% Similarity=0.251 Sum_probs=45.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKI 256 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 256 (922)
+...+.|+|.+|+|||+||.++++... .....++++++. ++...+-..... ..... .+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~~------~l~~~l~~~~~~------~~~~~----~~l~~ 160 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTVP------DVMSRLHESYDN------GQSGE----KFLQE 160 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEHH------HHHHHHHHHHhc------cchHH----HHHHH
Confidence 346789999999999999999999982 223345666543 444444433211 11111 22222
Q ss_pred hcCCcEEEEEccCCC
Q 042817 257 LSNKKFVLLLDDMWE 271 (922)
Q Consensus 257 l~~kr~LlVlDdv~~ 271 (922)
+ .+-=||||||+..
T Consensus 161 l-~~~dLLiIDDlg~ 174 (248)
T PRK12377 161 L-CKVDLLVLDEIGI 174 (248)
T ss_pred h-cCCCEEEEcCCCC
Confidence 3 3556999999943
No 214
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.70 E-value=0.011 Score=72.55 Aligned_cols=46 Identities=33% Similarity=0.488 Sum_probs=37.4
Q ss_pred CcccchhhHHHHHHHHhcc-------C--CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 157 PRIIGQESIFDDAWRCMIE-------E--QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..++|.+..++.+...+.. . ...++.++|+.|+|||++|+++++..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999998888887752 1 12478899999999999999999876
No 215
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.69 E-value=0.011 Score=71.91 Aligned_cols=172 Identities=15% Similarity=0.128 Sum_probs=91.9
Q ss_pred cccchhhHHHHHHHHhcc-------------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHH
Q 042817 158 RIIGQESIFDDAWRCMIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLE 224 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 224 (922)
.+.|.+..++++.+.+.- ...+-+.++|++|+|||+||+++++.. ...| +.++.+
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~---~~~~---i~i~~~------ 246 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA---GAYF---ISINGP------ 246 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeE---EEEecH------
Confidence 478999998888776531 123568899999999999999999986 3332 222211
Q ss_pred HHHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCccc-------------cccccccCCC-CCCCcE
Q 042817 225 KVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPVD-------------LTKVGVPIPN-STNASK 290 (922)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~-~~~gs~ 290 (922)
++ .... ...........+.......+.+|+||+++.... ...+...+.. ...+..
T Consensus 247 ~i----~~~~-------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 247 EI----MSKY-------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred HH----hccc-------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 11 1000 111122222233333456678999999854210 1112111111 122333
Q ss_pred EEE-EcCChhhh-ccc----cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhH
Q 042817 291 VVF-TTRYKEVC-GKM----EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLA 356 (922)
Q Consensus 291 Iiv-TtR~~~v~-~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 356 (922)
++| ||....-. ..+ .-...+.+...+.++-.+++........... ......+++.+.|.--+
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~----d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE----DVDLDKLAEVTHGFVGA 383 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc----ccCHHHHHHhCCCCCHH
Confidence 444 55443321 111 1234677888888888888875543322111 12356677888876533
No 216
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.69 E-value=0.0045 Score=75.87 Aligned_cols=106 Identities=22% Similarity=0.266 Sum_probs=62.6
Q ss_pred CCcccchhhHHHHHHHHhcc-------C--CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHH
Q 042817 156 EPRIIGQESIFDDAWRCMIE-------E--QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKV 226 (922)
Q Consensus 156 ~~~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~ 226 (922)
...++|.+..++.+.+.+.. . ....+-++|+.|+|||+||+.+++.. -+.-...+-++.+.-.+...+
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l---~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF---FGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh---cCCccceEEEEchhccccccH
Confidence 35689999999999887752 1 23456789999999999999999876 222233455555443322222
Q ss_pred HHHHHhhccCCcccccCCChhhhHHHHHHHhcCCc-EEEEEccCCCc
Q 042817 227 QEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKK-FVLLLDDMWEP 272 (922)
Q Consensus 227 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr-~LlVlDdv~~~ 272 (922)
.+ -++.+. .+...+. ...+.+.++.++ -+++||+++..
T Consensus 585 ~~----l~g~~~-gyvg~~~---~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 585 SK----LIGSPP-GYVGYNE---GGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred HH----hcCCCC-cccCcCc---cchHHHHHHhCCCeEEEECChhhC
Confidence 11 122211 1111111 123455565555 48999999763
No 217
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.68 E-value=0.0038 Score=76.08 Aligned_cols=47 Identities=30% Similarity=0.441 Sum_probs=38.8
Q ss_pred CCcccchhhHHHHHHHHhcc-------C--CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 156 EPRIIGQESIFDDAWRCMIE-------E--QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 156 ~~~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...++|.+..++.+.+.+.. + ...++.++|+.|+|||.+|++++...
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999888742 1 34578899999999999999998876
No 218
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.00017 Score=71.85 Aligned_cols=100 Identities=26% Similarity=0.343 Sum_probs=57.0
Q ss_pred CCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeeeccCCccccch--hhccCCCCCEE
Q 042817 537 CPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSSTGIRVLPE--ELKALKDLSYL 614 (922)
Q Consensus 537 ~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~--~l~~l~~L~~L 614 (922)
+.+.+.|++.+|.++++. +..+|+.|++|.|+-| .++.+.+ +..|++|+.|.|+.|.|..+-+ -+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvN-kIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVN-KISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeecc-ccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 334555666666655543 2566777777777777 6666543 6667777777777776665532 24555666666
Q ss_pred eCCCCccccccChh----hhCCCCCCCEEE
Q 042817 615 NMERTSFVRRIPRQ----LISNFPLLRVLR 640 (922)
Q Consensus 615 ~l~~~~~l~~lp~~----~i~~l~~L~~L~ 640 (922)
-|..|.-.+.-+.+ ++.-|++|+.|+
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 55555433333221 334455555553
No 219
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.65 E-value=0.0069 Score=74.45 Aligned_cols=61 Identities=28% Similarity=0.410 Sum_probs=45.2
Q ss_pred CcccchhhHHHHHHHHhccC---------CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCC
Q 042817 157 PRIIGQESIFDDAWRCMIEE---------QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKD 220 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~ 220 (922)
..++|.+..++.+...+... ...++.++|+.|+|||++|+.++... ...-...+.++++.-
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l---~~~~~~~i~~d~s~~ 634 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL---FDDEDAMVRIDMSEY 634 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---cCCCCcEEEEechhh
Confidence 46899999999998888531 23568899999999999999999876 222234455555543
No 220
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.034 Score=62.87 Aligned_cols=164 Identities=16% Similarity=0.150 Sum_probs=86.1
Q ss_pred cccchhhHHHHHHHHhcc-------------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHH
Q 042817 158 RIIGQESIFDDAWRCMIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLE 224 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 224 (922)
++=|.|+.+.++-+...- ...+-|-.+|+||.|||++|+++++.. ...| +.++..
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~---~~nF-----lsvkgp---- 502 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA---GMNF-----LSVKGP---- 502 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh---cCCe-----eeccCH----
Confidence 445577766666544431 245678899999999999999999987 4444 222221
Q ss_pred HHHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCcc-------------ccccccccCCCCCC--Cc
Q 042817 225 KVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPV-------------DLTKVGVPIPNSTN--AS 289 (922)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------------~~~~l~~~~~~~~~--gs 289 (922)
++ ... |-..++..+....++.=+--+++|.||.++... .+..+...+..... +-
T Consensus 503 EL----~sk-------~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V 571 (693)
T KOG0730|consen 503 EL----FSK-------YVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNV 571 (693)
T ss_pred HH----HHH-------hcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcE
Confidence 11 110 112222222222222223466888888886421 01112122221112 22
Q ss_pred EEEEEcCChhhhc--ccc---ccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHH
Q 042817 290 KVVFTTRYKEVCG--KME---AHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQ 344 (922)
Q Consensus 290 ~IivTtR~~~v~~--~~~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~ 344 (922)
-||-.|..++... .+. -+..+.++.-+.+--.++|+.++........-+++++++
T Consensus 572 ~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~ 631 (693)
T KOG0730|consen 572 LVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQ 631 (693)
T ss_pred EEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHH
Confidence 2333344343322 122 345666766667777889998887665444445555544
No 221
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.64 E-value=0.00088 Score=66.85 Aligned_cols=105 Identities=30% Similarity=0.330 Sum_probs=62.5
Q ss_pred CCceEEEeccCcccccchhhhccCCCceEEEccCC--CCCcccCccccCcccCCeeeeccCCccccc--hhhccCCCCCE
Q 042817 538 PHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNN--FSLREFPPGISKLISLQYLNLSSTGIRVLP--EELKALKDLSY 613 (922)
Q Consensus 538 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~--~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp--~~l~~l~~L~~ 613 (922)
..|..|.+.++.++.+.. |..|++|+.|.++.| +....++.....+++|++|++++|+|+.+. ..+..+.+|..
T Consensus 43 ~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred cchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 344444444444443332 455667777777776 444455555556677777888777666321 13566777888
Q ss_pred EeCCCCccccccC---hhhhCCCCCCCEEEeecCC
Q 042817 614 LNMERTSFVRRIP---RQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 614 L~l~~~~~l~~lp---~~~i~~l~~L~~L~l~~~~ 645 (922)
|++.+|.... +- ..++.-+++|+.|+-..+.
T Consensus 121 Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 121 LDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhcccCCccc-cccHHHHHHHHhhhhccccccccC
Confidence 8888886433 32 2345667777777766554
No 222
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.63 E-value=0.0049 Score=74.54 Aligned_cols=103 Identities=23% Similarity=0.295 Sum_probs=61.2
Q ss_pred CCcccchhhHHHHHHHHhcc-------C--CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHH
Q 042817 156 EPRIIGQESIFDDAWRCMIE-------E--QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKV 226 (922)
Q Consensus 156 ~~~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~ 226 (922)
...++|.+..++.+...+.. . ...++.++|+.|+|||+||+.++... . ...+.++.+...+...
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l---~---~~~~~~d~se~~~~~~- 525 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL---G---VHLERFDMSEYMEKHT- 525 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh---c---CCeEEEeCchhhhccc-
Confidence 34689999999988887752 1 23467899999999999999999876 2 2345555554322111
Q ss_pred HHHHHhhccCCcccccCCChhhhHHHHHHHhcCCc-EEEEEccCCCc
Q 042817 227 QEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKK-FVLLLDDMWEP 272 (922)
Q Consensus 227 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr-~LlVlDdv~~~ 272 (922)
+.+.++.+.. +...+. ...+.+.++.++ -+++||+++..
T Consensus 526 ---~~~lig~~~g-yvg~~~---~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 526 ---VSRLIGAPPG-YVGFEQ---GGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred ---HHHHhcCCCC-Ccccch---hhHHHHHHHhCCCeEEEEechhhc
Confidence 1112222211 111111 123444454444 59999999763
No 223
>PRK06526 transposase; Provisional
Probab=96.63 E-value=0.0019 Score=66.81 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..-+.|+|++|+|||+||.++.+..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH
Confidence 3468999999999999999999887
No 224
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.59 E-value=0.024 Score=56.33 Aligned_cols=169 Identities=14% Similarity=0.213 Sum_probs=98.2
Q ss_pred cccchhhHHHH---HHHHhccC------CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHH
Q 042817 158 RIIGQESIFDD---AWRCMIEE------QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQE 228 (922)
Q Consensus 158 ~~vGr~~~~~~---l~~~L~~~------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 228 (922)
++||.++.+.+ |+++|.++ ..+-|-.+|++|.|||-+|+++++.. +..|- -|. ..+
T Consensus 122 dViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~l---~vk---------at~ 186 (368)
T COG1223 122 DVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPLL---LVK---------ATE 186 (368)
T ss_pred hhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCceE---Eec---------hHH
Confidence 57898876544 67777763 35678899999999999999999987 33332 111 111
Q ss_pred HHHhhccCCcccccCCChhhhHHHHHHHh-cCCcEEEEEccCCCc----------cc----cccccccCC--CCCCCcEE
Q 042817 229 DIGKKIDMFSESWKNKSPVEKSCAIFKIL-SNKKFVLLLDDMWEP----------VD----LTKVGVPIP--NSTNASKV 291 (922)
Q Consensus 229 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~----------~~----~~~l~~~~~--~~~~gs~I 291 (922)
-|.+..+ +....+..+.+.- +.-++.+.+|.++-. .+ ...+...+. ..+.|-.-
T Consensus 187 liGehVG---------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvt 257 (368)
T COG1223 187 LIGEHVG---------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVT 257 (368)
T ss_pred HHHHHhh---------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEE
Confidence 2222221 2222233333333 347899999988642 11 112222221 12346666
Q ss_pred EEEcCChhhhccc-c--ccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCch
Q 042817 292 VFTTRYKEVCGKM-E--AHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLP 354 (922)
Q Consensus 292 ivTtR~~~v~~~~-~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 354 (922)
|-.|.+.+..... . -...++...-+++|-.+++...+..-..+... ..+.++++.+|+.
T Consensus 258 IaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~----~~~~~~~~t~g~S 319 (368)
T COG1223 258 IAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDA----DLRYLAAKTKGMS 319 (368)
T ss_pred EeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcccc----CHHHHHHHhCCCC
Confidence 6667766664321 1 12456777778899999998887544323222 2556667777653
No 225
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.59 E-value=0.067 Score=57.13 Aligned_cols=175 Identities=10% Similarity=0.048 Sum_probs=93.9
Q ss_pred HHHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhcc------CC
Q 042817 165 IFDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKID------MF 237 (922)
Q Consensus 165 ~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~------~~ 237 (922)
..+++.+.+..+.+ ..+-++|+.|+||+++|+.++...-.. +.-+ ...+.-..-+.+...-. .+
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~-~~~~--------~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQ-NYQS--------EACGFCHSCELMQSGNHPDLHVIKP 81 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCC-CCCC--------CCCCCCHHHHHHHcCCCCCEEEEec
Confidence 44566666655543 478899999999999999998876211 1000 00010011111111000 00
Q ss_pred cccccCCChhhhHHHHHHHh-----cCCcEEEEEccCCCc--cccccccccCCCCCCCcEEEEEcCCh-hhhccc-cccc
Q 042817 238 SESWKNKSPVEKSCAIFKIL-----SNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVFTTRYK-EVCGKM-EAHK 308 (922)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~~-~v~~~~-~~~~ 308 (922)
.........++. ..+.+.+ .+++-.+|+|+++.. .....+...+..-..++.+|++|.+. .+...+ +.-.
T Consensus 82 ~~~~~~I~vdqi-R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq 160 (319)
T PRK06090 82 EKEGKSITVEQI-RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQ 160 (319)
T ss_pred CcCCCcCCHHHH-HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcce
Confidence 000001112222 2233333 245568999999764 23344433333334456666655554 454433 3345
Q ss_pred eeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHH
Q 042817 309 KLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITI 360 (922)
Q Consensus 309 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 360 (922)
.+.+.+++.+++.+.+.... . . .+..+++.++|.|+.+..+
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~---~-~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 161 QWVVTPPSTAQAMQWLKGQG---I-T-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred eEeCCCCCHHHHHHHHHHcC---C-c-------hHHHHHHHcCCCHHHHHHH
Confidence 78999999999998886531 0 0 2356789999999877654
No 226
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.57 E-value=0.0034 Score=58.83 Aligned_cols=75 Identities=28% Similarity=0.288 Sum_probs=45.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHHhcCC
Q 042817 181 IGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNK 260 (922)
Q Consensus 181 i~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k 260 (922)
|-++|++|+|||+||+.+++.. .. ...-+.++...+..++....--. .....+......... .+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~~---~~~~i~~~~~~~~~dl~g~~~~~--~~~~~~~~~~l~~a~--------~~ 65 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---GR---PVIRINCSSDTTEEDLIGSYDPS--NGQFEFKDGPLVRAM--------RK 65 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---TC---EEEEEE-TTTSTHHHHHCEEET---TTTTCEEE-CCCTTH--------HE
T ss_pred EEEECCCCCCHHHHHHHHHHHh---hc---ceEEEEeccccccccceeeeeec--ccccccccccccccc--------cc
Confidence 5689999999999999999987 22 34456788888877765433221 011111111111111 18
Q ss_pred cEEEEEccCCC
Q 042817 261 KFVLLLDDMWE 271 (922)
Q Consensus 261 r~LlVlDdv~~ 271 (922)
..++|||++..
T Consensus 66 ~~il~lDEin~ 76 (139)
T PF07728_consen 66 GGILVLDEINR 76 (139)
T ss_dssp EEEEEESSCGG
T ss_pred eeEEEECCccc
Confidence 89999999974
No 227
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.56 E-value=0.0079 Score=60.91 Aligned_cols=48 Identities=23% Similarity=0.342 Sum_probs=37.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQE 228 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 228 (922)
.-+++-|+|++|+|||++|.+++... ...-..++|++... ++...+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~---~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNA---ARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEECCC-CCHHHHHH
Confidence 34799999999999999999988776 23346889999876 66555544
No 228
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.55 E-value=0.00045 Score=80.23 Aligned_cols=115 Identities=24% Similarity=0.229 Sum_probs=68.9
Q ss_pred hccCCCceEEEccCCCCCcc--cCccccCcccCCeeeeccC--Cccc----cchhhccCCCCCEEeCCCCccccccChhh
Q 042817 558 FQFMPSLKVLNLSNNFSLRE--FPPGISKLISLQYLNLSST--GIRV----LPEELKALKDLSYLNMERTSFVRRIPRQL 629 (922)
Q Consensus 558 ~~~l~~L~~L~L~~~~~l~~--lp~~i~~L~~L~~L~L~~~--~i~~----lp~~l~~l~~L~~L~l~~~~~l~~lp~~~ 629 (922)
...++.|+.|.+.+|..+.. +-.....+++|+.|+++++ .+.. .+.....+++|+.|+++.|..+...--..
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 44578888888888876665 3345667888999998873 2221 12234456788888888876433332222
Q ss_pred h-CCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCceEEEEEech
Q 042817 630 I-SNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSVLSVCLESD 683 (922)
Q Consensus 630 i-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~ 683 (922)
+ ..+++|++|.+.+|..+ .+.....-...+++|+.|+++.+..
T Consensus 264 l~~~c~~L~~L~l~~c~~l-----------t~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNL-----------TDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HHhhCCCcceEccCCCCcc-----------chhHHHHHHHhcCcccEEeeecCcc
Confidence 2 34778888887767632 1122233334456677777764443
No 229
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.54 E-value=0.012 Score=60.44 Aligned_cols=46 Identities=28% Similarity=0.398 Sum_probs=35.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKV 226 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~ 226 (922)
.-.++.|+|.+|+|||++|.+++.... ..-..++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHH
Confidence 346999999999999999999988762 234678999887 5555544
No 230
>PRK09183 transposase/IS protein; Provisional
Probab=96.53 E-value=0.0025 Score=66.45 Aligned_cols=24 Identities=42% Similarity=0.472 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..+.|+|++|+|||+||.++.+..
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHH
Confidence 467799999999999999998875
No 231
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.53 E-value=0.064 Score=58.01 Aligned_cols=177 Identities=9% Similarity=-0.015 Sum_probs=94.2
Q ss_pred HHHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhcc------CC
Q 042817 165 IFDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKID------MF 237 (922)
Q Consensus 165 ~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~------~~ 237 (922)
.-+++...+..+++ .-+-+.|+.|+||+++|.+++...-.. ..-+. ..++.-.--+.+....- .+
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~-~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQ-QPQGH-------KSCGHCRGCQLMQAGTHPDYYTLTP 81 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCC-CCCCC-------CCCCCCHHHHHHHcCCCCCEEEEec
Confidence 45667777766543 577899999999999999988876211 10000 00010011111110000 00
Q ss_pred cccccCCChhhhHHHHHHHh-----cCCcEEEEEccCCCcc--ccccccccCCCCCCCcEEEEEcCCh-hhhccc-cccc
Q 042817 238 SESWKNKSPVEKSCAIFKIL-----SNKKFVLLLDDMWEPV--DLTKVGVPIPNSTNASKVVFTTRYK-EVCGKM-EAHK 308 (922)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTtR~~-~v~~~~-~~~~ 308 (922)
.........++. +.+.+.+ .+++-.+|+|+++... .-..+...+..-..++.+|.+|.+. .+...+ +.-.
T Consensus 82 ~~~~~~I~idqi-R~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq 160 (334)
T PRK07993 82 EKGKSSLGVDAV-REVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCR 160 (334)
T ss_pred ccccccCCHHHH-HHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccc
Confidence 000001112222 2233333 2567799999997642 3333333333324456666666554 454332 2345
Q ss_pred eeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHH
Q 042817 309 KLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAII 358 (922)
Q Consensus 309 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 358 (922)
.+.+.+++.+++.+.+....+. ..+.+..++..++|.|....
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~~~--------~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 161 LHYLAPPPEQYALTWLSREVTM--------SQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred cccCCCCCHHHHHHHHHHccCC--------CHHHHHHHHHHcCCCHHHHH
Confidence 7899999999998887643211 13346788999999996544
No 232
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.52 E-value=0.023 Score=58.36 Aligned_cols=91 Identities=14% Similarity=0.166 Sum_probs=55.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCC------ceEEEEEeCCCCCHHHHHHHHHhhccCCcc-------cccC
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDF------DIVIWVVVSKDLNLEKVQEDIGKKIDMFSE-------SWKN 243 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F------~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-------~~~~ 243 (922)
.-.++.|+|.+|+|||++|.+++... ...- ..++|++....++...+.+ +++......+ -...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~---~~~~~~~g~~~~v~yi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA---QLPGELGGLEGKVVYIDTEGAFRPERLVQ-LAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh---hcccccCCCcceEEEEecCCCCCHHHHHH-HHHHhccchhhhhccEEEEeC
Confidence 34699999999999999999987765 1222 5688999887777655433 3332211100 0112
Q ss_pred CChhhhHHHHHHHhc----CCcEEEEEccCCC
Q 042817 244 KSPVEKSCAIFKILS----NKKFVLLLDDMWE 271 (922)
Q Consensus 244 ~~~~~~~~~l~~~l~----~kr~LlVlDdv~~ 271 (922)
.+.++....+.+..+ .+.-|+|+|.+..
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 344555555555443 3455899998843
No 233
>PRK06921 hypothetical protein; Provisional
Probab=96.50 E-value=0.0046 Score=64.61 Aligned_cols=39 Identities=33% Similarity=0.408 Sum_probs=29.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEe
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVV 217 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~ 217 (922)
...-+.++|..|+|||+||.++++... ...-..++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~--~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM--RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh--hhcCceEEEEEH
Confidence 356789999999999999999999872 221244566664
No 234
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.46 E-value=0.12 Score=58.34 Aligned_cols=88 Identities=20% Similarity=0.265 Sum_probs=47.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCC-CCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHH
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKD-LNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKI 256 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 256 (922)
..+|+|+|++|+||||++..++... ..+.....+..++.... ....+.++...+.++.... ...+...+...+. .
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~l-a~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL~-~ 425 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRF-AAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLLE-R 425 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHHH-H
Confidence 4799999999999999999988776 22222334555554221 1122223333333433221 1222333333333 3
Q ss_pred hcCCcEEEEEccCC
Q 042817 257 LSNKKFVLLLDDMW 270 (922)
Q Consensus 257 l~~kr~LlVlDdv~ 270 (922)
+.+ .=+|++|..-
T Consensus 426 l~~-~DLVLIDTaG 438 (559)
T PRK12727 426 LRD-YKLVLIDTAG 438 (559)
T ss_pred hcc-CCEEEecCCC
Confidence 333 4588888874
No 235
>PRK04132 replication factor C small subunit; Provisional
Probab=96.46 E-value=0.04 Score=66.16 Aligned_cols=152 Identities=10% Similarity=0.080 Sum_probs=92.8
Q ss_pred CCCCcHHHHHHHHHHHhhhccCCC-ceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEE
Q 042817 186 AGGVGKTTLLKQLNNKLCQERHDF-DIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVL 264 (922)
Q Consensus 186 ~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~Ll 264 (922)
|.|+||||+|.+++++. - ...+ ..++-+++|...++..+...|-+...... . -..+.-++
T Consensus 574 Ph~lGKTT~A~ala~~l-~-g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~-----~------------~~~~~KVv 634 (846)
T PRK04132 574 PTVLHNTTAALALAREL-F-GENWRHNFLELNASDERGINVIREKVKEFARTKP-----I------------GGASFKII 634 (846)
T ss_pred CCcccHHHHHHHHHHhh-h-cccccCeEEEEeCCCcccHHHHHHHHHHHHhcCC-----c------------CCCCCEEE
Confidence 78999999999999986 1 1222 24677788876666655433322211110 0 01245799
Q ss_pred EEccCCCcc--ccccccccCCCCCCCcEEEEEcCCh-hhhccc-cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChh
Q 042817 265 LLDDMWEPV--DLTKVGVPIPNSTNASKVVFTTRYK-EVCGKM-EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIP 340 (922)
Q Consensus 265 VlDdv~~~~--~~~~l~~~~~~~~~gs~IivTtR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~ 340 (922)
|+|+++... ....+...+......+++|.+|.+. .+.... +....+.+.+++.++-.+.+...+....... ..
T Consensus 635 IIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i---~~ 711 (846)
T PRK04132 635 FLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL---TE 711 (846)
T ss_pred EEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC---CH
Confidence 999998753 3444443333323456666655544 333222 2346889999999998888877654332211 24
Q ss_pred HHHHHHHHHhCCchhHHHH
Q 042817 341 KHAQLVAKECGGLPLAIIT 359 (922)
Q Consensus 341 ~~~~~i~~~c~glPLai~~ 359 (922)
+....|++.++|.+-.+..
T Consensus 712 e~L~~Ia~~s~GDlR~AIn 730 (846)
T PRK04132 712 EGLQAILYIAEGDMRRAIN 730 (846)
T ss_pred HHHHHHHHHcCCCHHHHHH
Confidence 5778999999998855443
No 236
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.12 Score=59.51 Aligned_cols=143 Identities=16% Similarity=0.128 Sum_probs=83.6
Q ss_pred CcccchhhHHHHHHHHhcc---------C---CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHH
Q 042817 157 PRIIGQESIFDDAWRCMIE---------E---QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLE 224 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~---------~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 224 (922)
.++=|.++.+.+|.+-+.- . +..=|-+||++|.|||-+||+|+.+.. .-|++|.+.
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs--------L~FlSVKGP---- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS--------LNFLSVKGP---- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce--------eeEEeecCH----
Confidence 4667888888888877642 1 345688999999999999999999871 345555543
Q ss_pred HHHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCcc-------------------ccccccccCCCC
Q 042817 225 KVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPV-------------------DLTKVGVPIPNS 285 (922)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------------------~~~~l~~~~~~~ 285 (922)
+++..- -..+++.+.+...+.=..+++.|.||.+++.. -+.++...-...
T Consensus 740 ELLNMY-----------VGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~ 808 (953)
T KOG0736|consen 740 ELLNMY-----------VGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSS 808 (953)
T ss_pred HHHHHH-----------hcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCC
Confidence 121111 12233333333333334699999999997621 012221111113
Q ss_pred CCCcEEEEEcCChhhhcc--cc---ccceeecCCCCHHHHHH
Q 042817 286 TNASKVVFTTRYKEVCGK--ME---AHKKLRVECLTADDAWM 322 (922)
Q Consensus 286 ~~gs~IivTtR~~~v~~~--~~---~~~~~~l~~L~~~ea~~ 322 (922)
..+--||=.|..++..+- +. -++-+.+++=+.+++..
T Consensus 809 s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~ 850 (953)
T KOG0736|consen 809 SQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKL 850 (953)
T ss_pred CCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHH
Confidence 344456666776766432 11 23455666666666554
No 237
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.45 E-value=0.082 Score=60.27 Aligned_cols=163 Identities=15% Similarity=0.109 Sum_probs=101.1
Q ss_pred CcccchhhHHHHHHHHhcc-----CCeeEEEEEcCCCCcHHHHHHHHHHHhhh-----ccCCCceEEEEEeCCCCCHHHH
Q 042817 157 PRIIGQESIFDDAWRCMIE-----EQVGIIGLYGAGGVGKTTLLKQLNNKLCQ-----ERHDFDIVIWVVVSKDLNLEKV 226 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-----~~~~F~~~~wv~~s~~~~~~~~ 226 (922)
..+-+||.+..+|-+++.. +..+.+.|.|-+|.|||..+..|.+.... .-..|+ .+.|+.-.-..+.++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHH
Confidence 3456899999998887753 34459999999999999999999996621 122344 345665666779999
Q ss_pred HHHHHhhccCCcccccCCChhhhHHHHHHHhc-----CCcEEEEEccCCCcc-----ccccccccCCCCCCCcEEEEEcC
Q 042817 227 QEDIGKKIDMFSESWKNKSPVEKSCAIFKILS-----NKKFVLLLDDMWEPV-----DLTKVGVPIPNSTNASKVVFTTR 296 (922)
Q Consensus 227 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~IivTtR 296 (922)
...|..++.... .......+.+..+.. .+..++++|+++... .+..+.. + ...++||++|-+=
T Consensus 475 Y~~I~~~lsg~~-----~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fd-W-pt~~~sKLvvi~I 547 (767)
T KOG1514|consen 475 YEKIWEALSGER-----VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFD-W-PTLKNSKLVVIAI 547 (767)
T ss_pred HHHHHHhcccCc-----ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhc-C-CcCCCCceEEEEe
Confidence 999999987643 233344445555543 468899999986431 1222211 1 1245777665432
Q ss_pred Ch--h---------hhccccccceeecCCCCHHHHHHHHHHhh
Q 042817 297 YK--E---------VCGKMEAHKKLRVECLTADDAWMLFKVKV 328 (922)
Q Consensus 297 ~~--~---------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 328 (922)
.. + ++..+ ....+..++-+.++-.++...+.
T Consensus 548 aNTmdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL 589 (767)
T KOG1514|consen 548 ANTMDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARL 589 (767)
T ss_pred cccccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhh
Confidence 11 1 11111 12356667777777666666554
No 238
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.41 E-value=0.0025 Score=63.54 Aligned_cols=41 Identities=24% Similarity=0.343 Sum_probs=24.4
Q ss_pred hccCCCCCEEeCCCCccccccChh---hhCCCCCCCEEEeecCC
Q 042817 605 LKALKDLSYLNMERTSFVRRIPRQ---LISNFPLLRVLRMLDCG 645 (922)
Q Consensus 605 l~~l~~L~~L~l~~~~~l~~lp~~---~i~~l~~L~~L~l~~~~ 645 (922)
+-.+++|+..+|++|-+-...|+. .|++-+.|.||.+.+|.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 445666666666666554444432 35666677777777665
No 239
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.39 E-value=0.0017 Score=63.43 Aligned_cols=75 Identities=24% Similarity=0.363 Sum_probs=43.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKI 256 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 256 (922)
+..-+.++|.+|+|||.||.++.+... ...+ .+.|++ ..+++..+-..- ...... .+.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~--~~g~-~v~f~~------~~~L~~~l~~~~-------~~~~~~----~~~~~ 105 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAI--RKGY-SVLFIT------ASDLLDELKQSR-------SDGSYE----ELLKR 105 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHH--HTT---EEEEE------HHHHHHHHHCCH-------CCTTHC----HHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhc--cCCc-ceeEee------cCceeccccccc-------cccchh----hhcCc
Confidence 345699999999999999999999873 2233 356664 445555553321 111111 22333
Q ss_pred hcCCcEEEEEccCCCc
Q 042817 257 LSNKKFVLLLDDMWEP 272 (922)
Q Consensus 257 l~~kr~LlVlDdv~~~ 272 (922)
+.+ -=||||||+...
T Consensus 106 l~~-~dlLilDDlG~~ 120 (178)
T PF01695_consen 106 LKR-VDLLILDDLGYE 120 (178)
T ss_dssp HHT-SSCEEEETCTSS
T ss_pred ccc-ccEeccccccee
Confidence 433 347889999653
No 240
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.38 E-value=0.11 Score=56.04 Aligned_cols=91 Identities=11% Similarity=0.146 Sum_probs=56.3
Q ss_pred CCcEEEEEccCCCc--cccccccccCCCCCCCcEEEEEcCC-hhhhccc-cccceeecCCCCHHHHHHHHHHhhCCCCCC
Q 042817 259 NKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVFTTRY-KEVCGKM-EAHKKLRVECLTADDAWMLFKVKVGEDTID 334 (922)
Q Consensus 259 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 334 (922)
+++-++|+|+++.. .....+...+..-.+++.+|.+|.+ ..+...+ +.-..+.+.+++.++..+.+.... . .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~--~--~ 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG--V--A 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC--C--C
Confidence 45568899999864 3344444444333456666655554 4444332 234688999999999999887641 1 1
Q ss_pred CCCChhHHHHHHHHHhCCchhHHHHH
Q 042817 335 SHPEIPKHAQLVAKECGGLPLAIITI 360 (922)
Q Consensus 335 ~~~~~~~~~~~i~~~c~glPLai~~~ 360 (922)
. ...++..++|.|..+..+
T Consensus 207 ---~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 207 ---D----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred ---h----HHHHHHHcCCCHHHHHHH
Confidence 1 234577889999755543
No 241
>PRK06696 uridine kinase; Validated
Probab=96.37 E-value=0.0053 Score=62.70 Aligned_cols=42 Identities=14% Similarity=0.294 Sum_probs=35.3
Q ss_pred chhhHHHHHHHHhcc---CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 161 GQESIFDDAWRCMIE---EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 161 Gr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.|++.+++|.+.+.. +...+|+|.|.+|.||||+|+.+....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 466777888777753 467899999999999999999999987
No 242
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.36 E-value=0.0089 Score=63.73 Aligned_cols=115 Identities=22% Similarity=0.235 Sum_probs=65.1
Q ss_pred chhhHHHHHHHHhcc----CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccC
Q 042817 161 GQESIFDDAWRCMIE----EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDM 236 (922)
Q Consensus 161 Gr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 236 (922)
+|....+...+++.+ ...+-+.|+|..|+|||.||.++++... ...+ .+.++++ ..+...+......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~-~v~~~~~------~~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA--KKGV-SSTLLHF------PEFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCC-CEEEEEH------HHHHHHHHHHHhc
Confidence 455555555555542 1345789999999999999999999983 2233 3456654 3455555444321
Q ss_pred CcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCc--ccccc--ccccC-CCC-CCCcEEEEEcC
Q 042817 237 FSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEP--VDLTK--VGVPI-PNS-TNASKVVFTTR 296 (922)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~--l~~~~-~~~-~~gs~IivTtR 296 (922)
.+.. ...+.++ +-=||||||+.-+ .+|.. +...+ ... ..+-.+|+||.
T Consensus 206 -------~~~~----~~l~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 206 -------GSVK----EKIDAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred -------CcHH----HHHHHhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 1111 1222232 4458999999643 44532 32222 111 23445788876
No 243
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.36 E-value=0.0098 Score=63.21 Aligned_cols=87 Identities=14% Similarity=0.139 Sum_probs=56.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCccc---ccCCChhhhHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSES---WKNKSPVEKSCAI 253 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 253 (922)
.-+++-|+|++|+||||||.++..... ..-..++|++....++.. .+++++...+. ......++....+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~---~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 447999999999999999998877762 223567899877665543 34444432211 1223445555555
Q ss_pred HHHhc-CCcEEEEEccCCC
Q 042817 254 FKILS-NKKFVLLLDDMWE 271 (922)
Q Consensus 254 ~~~l~-~kr~LlVlDdv~~ 271 (922)
...++ +..-++|+|.|-.
T Consensus 126 ~~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHHhhccCCcEEEEcchhh
Confidence 55554 4566999999853
No 244
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.36 E-value=0.0082 Score=71.76 Aligned_cols=46 Identities=28% Similarity=0.387 Sum_probs=38.0
Q ss_pred CcccchhhHHHHHHHHhcc---------CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 157 PRIIGQESIFDDAWRCMIE---------EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..++|.+..++.+.+.+.. .....+-++|++|+|||++|+.++...
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999998888752 124578899999999999999998876
No 245
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.34 E-value=0.014 Score=60.30 Aligned_cols=92 Identities=17% Similarity=0.192 Sum_probs=54.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccC----CCceEEEEEeCCCCCHHHHHHHHHhhccCCccc-------ccCCC
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERH----DFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSES-------WKNKS 245 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 245 (922)
.-.++.|+|.+|+|||++|.+++... .... ....++|++....++...+.+ +++..+...+. ....+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCC
Confidence 34699999999999999999997554 1111 136899999888777655433 33333221110 01112
Q ss_pred hhh---hHHHHHHHhc-C-CcEEEEEccCC
Q 042817 246 PVE---KSCAIFKILS-N-KKFVLLLDDMW 270 (922)
Q Consensus 246 ~~~---~~~~l~~~l~-~-kr~LlVlDdv~ 270 (922)
..+ ....+.+.+. . +.-++|+|.+.
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 222 2233444443 3 56688999874
No 246
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.34 E-value=0.014 Score=60.63 Aligned_cols=91 Identities=21% Similarity=0.230 Sum_probs=54.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhc---cCCCceEEEEEeCCCCCHHHHHHHHHhhccCCccc-------ccCCChh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQE---RHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSES-------WKNKSPV 247 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~ 247 (922)
-.+.=|+|.+|+|||.||.+++-..... .+.=..++|++-...++...+. +|++..+...+. ....+..
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 3589999999999999998876554111 1223479999999999988775 455554322110 0122333
Q ss_pred hhHH---HHHHHh-cCCcEEEEEccC
Q 042817 248 EKSC---AIFKIL-SNKKFVLLLDDM 269 (922)
Q Consensus 248 ~~~~---~l~~~l-~~kr~LlVlDdv 269 (922)
+... .+...+ ..+--|||+|.+
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHhhccccceEEEEecch
Confidence 3332 233333 234558888887
No 247
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.32 E-value=0.01 Score=63.13 Aligned_cols=86 Identities=16% Similarity=0.133 Sum_probs=55.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCccc---ccCCChhhhHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSES---WKNKSPVEKSCAI 253 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 253 (922)
.-+++-|+|++|+||||||.+++.... ..-..++||+....++.. .++.++...+. ....+.++....+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~---~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQ---KLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 457899999999999999998877662 233568899887766653 33444432211 1223445555555
Q ss_pred HHHhc-CCcEEEEEccCC
Q 042817 254 FKILS-NKKFVLLLDDMW 270 (922)
Q Consensus 254 ~~~l~-~kr~LlVlDdv~ 270 (922)
...++ +.--++|+|-|-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 55554 356699999984
No 248
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.31 E-value=0.013 Score=55.31 Aligned_cols=117 Identities=21% Similarity=0.266 Sum_probs=63.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCC---CCCHHHHHHHHHhhccC---Cc-ccccCCChhh---
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSK---DLNLEKVQEDIGKKIDM---FS-ESWKNKSPVE--- 248 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~---~~~~~~~~~~i~~~l~~---~~-~~~~~~~~~~--- 248 (922)
.+|-|++..|.||||+|...+-+.. ...+ .+.++-.-+ ...-..+++.+- .+.. .. ..+...+..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~--~~g~-~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRAL--GHGY-RVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH--HCCC-eEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHH
Confidence 4788899999999999988887762 2333 344443222 334444444441 1110 00 0011111111
Q ss_pred ----hHHHHHHHhcCCcE-EEEEccCCCc-----cccccccccCCCCCCCcEEEEEcCChh
Q 042817 249 ----KSCAIFKILSNKKF-VLLLDDMWEP-----VDLTKVGVPIPNSTNASKVVFTTRYKE 299 (922)
Q Consensus 249 ----~~~~l~~~l~~kr~-LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~IivTtR~~~ 299 (922)
.....++.+....| |||||++-.. .+.+.+...+.....+..||+|.|+..
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 22334444545444 9999998543 233444444444556778999999864
No 249
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.31 E-value=0.013 Score=60.46 Aligned_cols=92 Identities=17% Similarity=0.342 Sum_probs=55.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCC-ceEEEEEeCCCC-CHHHHHHHHHhhccCCc-----ccccCCCh---
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDF-DIVIWVVVSKDL-NLEKVQEDIGKKIDMFS-----ESWKNKSP--- 246 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~--- 246 (922)
.-.-++|+|..|+||||||+.+++.. +.+| +.++++-+.+.. .+.++.+.+...=.... ...+....
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 34678999999999999999999997 3344 455666665543 45566666654311110 00011111
Q ss_pred --hhhHHHHHHHh--c-CCcEEEEEccCCC
Q 042817 247 --VEKSCAIFKIL--S-NKKFVLLLDDMWE 271 (922)
Q Consensus 247 --~~~~~~l~~~l--~-~kr~LlVlDdv~~ 271 (922)
...+-.+.+++ + ++.+|+++||+-.
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 11223455555 3 8899999999844
No 250
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.31 E-value=0.023 Score=58.32 Aligned_cols=89 Identities=17% Similarity=0.214 Sum_probs=51.6
Q ss_pred HHHHHHHHhcc--CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCccccc
Q 042817 165 IFDDAWRCMIE--EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWK 242 (922)
Q Consensus 165 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~ 242 (922)
.+..+.++..+ .+...+.++|.+|+|||+||.++++... . .-..+++++ +.++...+-..... .
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~-~--~g~~v~~it------~~~l~~~l~~~~~~-----~ 149 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL-L--RGKSVLIIT------VADIMSAMKDTFSN-----S 149 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH-h--cCCeEEEEE------HHHHHHHHHHHHhh-----c
Confidence 34444444432 2335789999999999999999999972 2 223456664 34455544433210 1
Q ss_pred CCChhhhHHHHHHHhcCCcEEEEEccCCCc
Q 042817 243 NKSPVEKSCAIFKILSNKKFVLLLDDMWEP 272 (922)
Q Consensus 243 ~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~ 272 (922)
.... ..+.+.+. +.=+||+||+...
T Consensus 150 ~~~~----~~~l~~l~-~~dlLvIDDig~~ 174 (244)
T PRK07952 150 ETSE----EQLLNDLS-NVDLLVIDEIGVQ 174 (244)
T ss_pred cccH----HHHHHHhc-cCCEEEEeCCCCC
Confidence 1111 12334454 3448888999653
No 251
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.31 E-value=0.028 Score=63.26 Aligned_cols=183 Identities=14% Similarity=0.197 Sum_probs=104.2
Q ss_pred cccchhhHHHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhh--c
Q 042817 158 RIIGQESIFDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKK--I 234 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~--l 234 (922)
++||.+..+..|...+..+.. .-.-..|+-|+||||+|+-++...-. ... .....++.-..-+.|... +
T Consensus 17 evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC-~~~-------~~~ePC~~C~~Ck~I~~g~~~ 88 (515)
T COG2812 17 DVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNC-ENG-------PTAEPCGKCISCKEINEGSLI 88 (515)
T ss_pred HhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcC-CCC-------CCCCcchhhhhhHhhhcCCcc
Confidence 579999999999999877643 35567899999999999999887611 110 111122222222333322 1
Q ss_pred cCCcccccCCChhhhHHHHHHHh--------cCCcEEEEEccCCC--ccccccccccCCCCCCCcEEEEEcCCh-hhh-c
Q 042817 235 DMFSESWKNKSPVEKSCAIFKIL--------SNKKFVLLLDDMWE--PVDLTKVGVPIPNSTNASKVVFTTRYK-EVC-G 302 (922)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l--------~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IivTtR~~-~v~-~ 302 (922)
.... .+......++.+++.. +++-=..|+|.|.- ...|..+...+..-...-+.|..|++. .+- .
T Consensus 89 DviE---iDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~T 165 (515)
T COG2812 89 DVIE---IDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNT 165 (515)
T ss_pred cchh---hhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchh
Confidence 1000 0001111223333332 24555899999964 345666554443333445555555554 342 2
Q ss_pred cccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCch
Q 042817 303 KMEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLP 354 (922)
Q Consensus 303 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 354 (922)
..+....|.++.++.++-...+...+....... .++....|++...|..
T Consensus 166 IlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~---e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 166 ILSRCQRFDFKRLDLEEIAKHLAAILDKEGINI---EEDALSLIARAAEGSL 214 (515)
T ss_pred hhhccccccccCCCHHHHHHHHHHHHHhcCCcc---CHHHHHHHHHHcCCCh
Confidence 334457899999999998888888776554322 2344555666655543
No 252
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=0.00032 Score=69.86 Aligned_cols=106 Identities=23% Similarity=0.262 Sum_probs=78.5
Q ss_pred CCCceEEEccCCCCCcccCccccCcccCCeeeeccCCccccchhhccCCCCCEEeCCCCccccccCh-hhhCCCCCCCEE
Q 042817 561 MPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSSTGIRVLPEELKALKDLSYLNMERTSFVRRIPR-QLISNFPLLRVL 639 (922)
Q Consensus 561 l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L 639 (922)
+.+.+.|+..|| .++.+. ...+++.|+.|.|+-|+|+.|- .+..+++|+.|+|+.|. +..+.. ..+.++++|++|
T Consensus 18 l~~vkKLNcwg~-~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCC-CccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhH
Confidence 556788899999 777764 2457999999999999999994 68899999999999986 455532 236899999999
Q ss_pred EeecCCcccccccCcccccCccchHHHhhcCCCCceEEE
Q 042817 640 RMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSVLSV 678 (922)
Q Consensus 640 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l 678 (922)
.+..|.-.. .........-|.-|++|++|+-
T Consensus 94 WL~ENPCc~--------~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 94 WLDENPCCG--------EAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hhccCCccc--------ccchhHHHHHHHHcccchhccC
Confidence 998765221 1122234556777788877764
No 253
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.29 E-value=0.031 Score=56.99 Aligned_cols=43 Identities=21% Similarity=0.238 Sum_probs=32.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCC
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLN 222 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~ 222 (922)
.-.++.|+|.+|+||||+|.+++.... ..-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~---~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETA---GQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCCCCH
Confidence 457999999999999999999988762 2234677887655543
No 254
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.28 E-value=0.019 Score=62.62 Aligned_cols=138 Identities=13% Similarity=0.170 Sum_probs=78.6
Q ss_pred ccchhhHHHHHHHHhcc-CCee-EEEEEcCCCCcHHHHHHHHHHHhhhccC------------------CCceEEEEEeC
Q 042817 159 IIGQESIFDDAWRCMIE-EQVG-IIGLYGAGGVGKTTLLKQLNNKLCQERH------------------DFDIVIWVVVS 218 (922)
Q Consensus 159 ~vGr~~~~~~l~~~L~~-~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~F~~~~wv~~s 218 (922)
++|-+....++..+..+ ++.. .+-++|++|+||||+|.++++..-.... ..+.+..++.+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 56777788888888764 3344 4999999999999999999998721000 11234444444
Q ss_pred CCCC---HHHHHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCccc--cccccccCCCCCCCcEEEE
Q 042817 219 KDLN---LEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPVD--LTKVGVPIPNSTNASKVVF 293 (922)
Q Consensus 219 ~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~gs~Iiv 293 (922)
.... ..+..+++.+...... ..++.-++++|+++.... -..+...+......+.+|+
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~------------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il 144 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESP------------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFIL 144 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCC------------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEE
Confidence 4433 2333333333332211 035677999999987522 2233333333345677887
Q ss_pred EcCCh-hhhccc-cccceeecCC
Q 042817 294 TTRYK-EVCGKM-EAHKKLRVEC 314 (922)
Q Consensus 294 TtR~~-~v~~~~-~~~~~~~l~~ 314 (922)
+|.+. .+.... +....+++.+
T Consensus 145 ~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 145 ITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EcCChhhccchhhhcceeeecCC
Confidence 77743 333322 2234566666
No 255
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.21 E-value=0.0052 Score=69.11 Aligned_cols=45 Identities=27% Similarity=0.397 Sum_probs=40.2
Q ss_pred cccchhhHHHHHHHHhc------cCCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 158 RIIGQESIFDDAWRCMI------EEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.++|.++.+++|++.|. +...+++.++|++|+||||||+.+++-.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 46999999999999983 3456899999999999999999999987
No 256
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.16 E-value=0.011 Score=57.94 Aligned_cols=36 Identities=33% Similarity=0.485 Sum_probs=29.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEE
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVV 216 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 216 (922)
..+|.+.|+.|.||||+|+.+++.. ...+...++++
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~~ 42 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYLD 42 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEe
Confidence 4589999999999999999999988 34555555553
No 257
>PRK09354 recA recombinase A; Provisional
Probab=96.15 E-value=0.016 Score=62.25 Aligned_cols=87 Identities=15% Similarity=0.150 Sum_probs=57.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCccc---ccCCChhhhHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSES---WKNKSPVEKSCAI 253 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 253 (922)
.-+++-|+|++|+||||||.+++... . ..-..++||+....++.. .++.++...+. ......++....+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~-~--~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEA-Q--KAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-H--HcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45789999999999999999887766 2 234578899988877753 34444432211 1223445555555
Q ss_pred HHHhc-CCcEEEEEccCCC
Q 042817 254 FKILS-NKKFVLLLDDMWE 271 (922)
Q Consensus 254 ~~~l~-~kr~LlVlDdv~~ 271 (922)
...++ +..-++|+|-|-.
T Consensus 131 ~~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HHHhhcCCCCEEEEeChhh
Confidence 55554 3566999999853
No 258
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.048 Score=63.59 Aligned_cols=173 Identities=14% Similarity=0.176 Sum_probs=100.0
Q ss_pred cccchhh---HHHHHHHHhccC---------CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHH
Q 042817 158 RIIGQES---IFDDAWRCMIEE---------QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEK 225 (922)
Q Consensus 158 ~~vGr~~---~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~ 225 (922)
++.|-|+ ++++++++|.++ -.+=+-++|++|.|||-||++++-.. .-. |++++..
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA---gVP-----F~svSGS----- 378 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVP-----FFSVSGS----- 378 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc---CCc-----eeeechH-----
Confidence 4577665 455666777652 13457799999999999999999987 223 3444432
Q ss_pred HHHHHHhhccCCcccccCCChhhhHHHHHHHh-cCCcEEEEEccCCCcc-----------------ccccccccCCCCCC
Q 042817 226 VQEDIGKKIDMFSESWKNKSPVEKSCAIFKIL-SNKKFVLLLDDMWEPV-----------------DLTKVGVPIPNSTN 287 (922)
Q Consensus 226 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~-----------------~~~~l~~~~~~~~~ 287 (922)
+..+.+... .......+...- ...++.+.+|+++... .+.++.........
T Consensus 379 ---EFvE~~~g~--------~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~ 447 (774)
T KOG0731|consen 379 ---EFVEMFVGV--------GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET 447 (774)
T ss_pred ---HHHHHhccc--------chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC
Confidence 111111110 022223333333 3468899999886421 12222222222222
Q ss_pred --CcEEEEEcCChhhhcc--c---cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHH
Q 042817 288 --ASKVVFTTRYKEVCGK--M---EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAI 357 (922)
Q Consensus 288 --gs~IivTtR~~~v~~~--~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 357 (922)
+--++-+|+..++.+. + .-+..+.++.-+...-.++|..++...... .+..++++ |+...-|.+=|.
T Consensus 448 ~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 448 SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHHH
Confidence 2334446666666432 1 124577888888888999998887655422 44566777 888888877443
No 259
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.13 E-value=0.047 Score=64.86 Aligned_cols=147 Identities=15% Similarity=0.177 Sum_probs=78.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHHhcC
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSN 259 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 259 (922)
-|.|+|++|.|||++|+.+++.. ...| +.++.+. +.. + . ...........+...-..
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~---~~~f---~~is~~~------~~~-~---~-------~g~~~~~~~~~f~~a~~~ 243 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSD------FVE-M---F-------VGVGASRVRDMFEQAKKA 243 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHc---CCCE---EEEehHH------hHH-h---h-------hcccHHHHHHHHHHHHhc
Confidence 48899999999999999999876 3333 2222221 111 0 0 011112222223333345
Q ss_pred CcEEEEEccCCCccc----------------cccccccCCC--CCCCcEEEEEcCChhhhccc-----cccceeecCCCC
Q 042817 260 KKFVLLLDDMWEPVD----------------LTKVGVPIPN--STNASKVVFTTRYKEVCGKM-----EAHKKLRVECLT 316 (922)
Q Consensus 260 kr~LlVlDdv~~~~~----------------~~~l~~~~~~--~~~gs~IivTtR~~~v~~~~-----~~~~~~~l~~L~ 316 (922)
.+++|++|+++.... +..+...+.. ...+.-||.||...+..... .-+..+.++..+
T Consensus 244 ~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd 323 (644)
T PRK10733 244 APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD 323 (644)
T ss_pred CCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCC
Confidence 789999999965310 1111111111 12344555677766653321 124567888888
Q ss_pred HHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCc
Q 042817 317 ADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGL 353 (922)
Q Consensus 317 ~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 353 (922)
.++-.+++.............+ ...+++.+.|.
T Consensus 324 ~~~R~~Il~~~~~~~~l~~~~d----~~~la~~t~G~ 356 (644)
T PRK10733 324 VRGREQILKVHMRRVPLAPDID----AAIIARGTPGF 356 (644)
T ss_pred HHHHHHHHHHHhhcCCCCCcCC----HHHHHhhCCCC
Confidence 8888888887765433222222 23355555553
No 260
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.12 E-value=0.023 Score=58.96 Aligned_cols=75 Identities=23% Similarity=0.301 Sum_probs=46.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKI 256 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 256 (922)
+..-+.++|.+|+|||.||.++.++.. +..+ .+.+++ ..++..++....... .....+.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~--~~g~-sv~f~~------~~el~~~Lk~~~~~~----------~~~~~l~~~ 164 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL--KAGI-SVLFIT------APDLLSKLKAAFDEG----------RLEEKLLRE 164 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH--HcCC-eEEEEE------HHHHHHHHHHHHhcC----------chHHHHHHH
Confidence 556789999999999999999999982 2223 455554 445555555544320 111122222
Q ss_pred hcCCcEEEEEccCCC
Q 042817 257 LSNKKFVLLLDDMWE 271 (922)
Q Consensus 257 l~~kr~LlVlDdv~~ 271 (922)
++ +-=||||||+--
T Consensus 165 l~-~~dlLIiDDlG~ 178 (254)
T COG1484 165 LK-KVDLLIIDDIGY 178 (254)
T ss_pred hh-cCCEEEEecccC
Confidence 22 223899999954
No 261
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.08 E-value=0.031 Score=53.75 Aligned_cols=40 Identities=30% Similarity=0.481 Sum_probs=30.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCC
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLN 222 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~ 222 (922)
++.|+|.+|+||||+|..+.... ...-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI---ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECCcchH
Confidence 46899999999999999999887 22345677887765543
No 262
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.011 Score=64.63 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=35.5
Q ss_pred cccchh---hHHHHHHHHhccC--------C-eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 158 RIIGQE---SIFDDAWRCMIEE--------Q-VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 158 ~~vGr~---~~~~~l~~~L~~~--------~-~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
++-|-| .++++|+++|.++ + .+=|-++|++|.|||-||++|+...
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 345655 4678889999863 2 2457899999999999999999887
No 263
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.06 E-value=0.0086 Score=59.82 Aligned_cols=39 Identities=26% Similarity=0.357 Sum_probs=21.8
Q ss_pred ccCcccCCeeeeccCCcc-ccch----hhccCCCCCEEeCCCCc
Q 042817 582 ISKLISLQYLNLSSTGIR-VLPE----ELKALKDLSYLNMERTS 620 (922)
Q Consensus 582 i~~L~~L~~L~L~~~~i~-~lp~----~l~~l~~L~~L~l~~~~ 620 (922)
+-+|++|+..+||.|-+. +.|+ -+.+-+.|.||.+++|.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 345566666666666443 2222 34455666666666664
No 264
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.06 E-value=0.019 Score=56.73 Aligned_cols=79 Identities=19% Similarity=0.201 Sum_probs=45.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKI 256 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 256 (922)
.+.+|||.|.+|.||||+|+.++... +..+-.+ ++...-+. ..-............+.....+.+-..+.|...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~---~~~~~~~--I~~D~YYk-~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL---GVEKVVV--ISLDDYYK-DQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh---CcCcceE--eecccccc-chhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 45799999999999999999999998 3232111 11111100 111111111222222333455666777788888
Q ss_pred hcCCc
Q 042817 257 LSNKK 261 (922)
Q Consensus 257 l~~kr 261 (922)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88877
No 265
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.05 E-value=0.016 Score=60.59 Aligned_cols=53 Identities=19% Similarity=0.289 Sum_probs=38.4
Q ss_pred cchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceE
Q 042817 160 IGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIV 212 (922)
Q Consensus 160 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~ 212 (922)
-+|..+-.--+++|.++.+..|.+.|.+|.|||-||.+..=..-..+..|..+
T Consensus 227 ~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~Ki 279 (436)
T COG1875 227 RPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKI 279 (436)
T ss_pred CcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceE
Confidence 34666666667888999999999999999999999976543331234455543
No 266
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.02 E-value=0.015 Score=66.21 Aligned_cols=73 Identities=25% Similarity=0.385 Sum_probs=56.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKI 256 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 256 (922)
.-+|+-++|++|+||||||.-++++. .| .++=|++|...+...+-..|...+.... .
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa-----GY-sVvEINASDeRt~~~v~~kI~~avq~~s-----------------~ 381 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA-----GY-SVVEINASDERTAPMVKEKIENAVQNHS-----------------V 381 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc-----Cc-eEEEecccccccHHHHHHHHHHHHhhcc-----------------c
Confidence 45799999999999999999999876 23 4778889998888888888777665432 1
Q ss_pred h--cCCcEEEEEccCCCc
Q 042817 257 L--SNKKFVLLLDDMWEP 272 (922)
Q Consensus 257 l--~~kr~LlVlDdv~~~ 272 (922)
+ .+++.-||+|.++..
T Consensus 382 l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 382 LDADSRPVCLVIDEIDGA 399 (877)
T ss_pred cccCCCcceEEEecccCC
Confidence 2 267888999998764
No 267
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.97 E-value=0.073 Score=55.27 Aligned_cols=169 Identities=15% Similarity=0.159 Sum_probs=96.3
Q ss_pred CcccchhhHHHHHHHHhcc----CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHH-HHHHHHH
Q 042817 157 PRIIGQESIFDDAWRCMIE----EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLE-KVQEDIG 231 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~-~~~~~i~ 231 (922)
..++|-.++-.++-.++.. ++..-+.|+|+.|.|||+|...+..+......+| +-|...+....+ -.++.|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHHH
Confidence 4578988888888888754 4556778999999999999988777742333333 444444443322 2344444
Q ss_pred hhccCCcc--cccCCChhhhHHHHHHHhcC------CcEEEEEccCCCccc------ccccccc-CCCCCCCcEEEEEcC
Q 042817 232 KKIDMFSE--SWKNKSPVEKSCAIFKILSN------KKFVLLLDDMWEPVD------LTKVGVP-IPNSTNASKVVFTTR 296 (922)
Q Consensus 232 ~~l~~~~~--~~~~~~~~~~~~~l~~~l~~------kr~LlVlDdv~~~~~------~~~l~~~-~~~~~~gs~IivTtR 296 (922)
+++..... .....+..+....+...|+. -++..|+|.++-... +..+... -....+-+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 44432111 11223344445556666642 367888888754211 1111111 112345677778999
Q ss_pred Chh-------hhccccccceeecCCCCHHHHHHHHHHhh
Q 042817 297 YKE-------VCGKMEAHKKLRVECLTADDAWMLFKVKV 328 (922)
Q Consensus 297 ~~~-------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 328 (922)
-.- |-....-..++-++.++-++...+++...
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 542 22222222355667777788888887665
No 268
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.96 E-value=0.011 Score=62.82 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=24.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..+.++|||++|.|||.+|+++++..
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999999997
No 269
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.95 E-value=0.092 Score=57.28 Aligned_cols=40 Identities=28% Similarity=0.454 Sum_probs=33.0
Q ss_pred hhHHHHHHHHhcc---CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 163 ESIFDDAWRCMIE---EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 163 ~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+...+.+.+.+.+ +...+|+|.|.=|+||||+.+.+.+..
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4456667777765 356799999999999999999999998
No 270
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.95 E-value=0.01 Score=54.69 Aligned_cols=24 Identities=46% Similarity=0.544 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
--|+|.|++|+||||+++.+.+..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 458999999999999999999998
No 271
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.94 E-value=0.012 Score=58.88 Aligned_cols=108 Identities=17% Similarity=0.193 Sum_probs=60.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHH---HHHhhccCCcccccCCChhhhHHHHHH
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQE---DIGKKIDMFSESWKNKSPVEKSCAIFK 255 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~---~i~~~l~~~~~~~~~~~~~~~~~~l~~ 255 (922)
.+|.|+|+.|.||||++..+.... .......++.- .... +.... .+..+-. ...+.....+.++.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~---~~~~~~~i~t~-e~~~--E~~~~~~~~~i~q~~------vg~~~~~~~~~i~~ 69 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI---NKNKTHHILTI-EDPI--EFVHESKRSLINQRE------VGLDTLSFENALKA 69 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---hhcCCcEEEEE-cCCc--cccccCccceeeecc------cCCCccCHHHHHHH
Confidence 478999999999999999988776 22233333332 1111 11000 0110000 01122344556777
Q ss_pred HhcCCcEEEEEccCCCccccccccccCCCCCCCcEEEEEcCChhhh
Q 042817 256 ILSNKKFVLLLDDMWEPVDLTKVGVPIPNSTNASKVVFTTRYKEVC 301 (922)
Q Consensus 256 ~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTtR~~~v~ 301 (922)
.++..+=.+++|++.+.+......... ..|..++.|+-..++.
T Consensus 70 aLr~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 70 ALRQDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred HhcCCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 787778899999997765544332221 2355577777665543
No 272
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.93 E-value=0.032 Score=54.47 Aligned_cols=23 Identities=48% Similarity=0.522 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
++.++|++|+||||++..++...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999887
No 273
>PRK06547 hypothetical protein; Provisional
Probab=95.93 E-value=0.011 Score=57.26 Aligned_cols=36 Identities=22% Similarity=0.149 Sum_probs=29.3
Q ss_pred HHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 167 DDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 167 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+.+...+......+|+|.|++|.||||+|+.+.+..
T Consensus 4 ~~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 4 ALIAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 344445556677899999999999999999999875
No 274
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.91 E-value=0.038 Score=59.10 Aligned_cols=93 Identities=13% Similarity=0.169 Sum_probs=56.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhc---cCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccc-------cCCCh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQE---RHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESW-------KNKSP 246 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~ 246 (922)
.-+++-|+|.+|+|||+++.+++-..... ...=..++||+....++.+.+.+ +++.++...+.. ...+.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCCH
Confidence 44688999999999999998776433111 11224789999999888888754 566665432110 11122
Q ss_pred hhhH---HHHHHHhc-CCcEEEEEccCC
Q 042817 247 VEKS---CAIFKILS-NKKFVLLLDDMW 270 (922)
Q Consensus 247 ~~~~---~~l~~~l~-~kr~LlVlDdv~ 270 (922)
++.. ..+...+. .+--|||+|.+-
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 2222 23333333 345578888874
No 275
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.91 E-value=0.02 Score=52.84 Aligned_cols=45 Identities=22% Similarity=0.396 Sum_probs=34.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCc
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFS 238 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 238 (922)
+|.|-|++|.||||+|+.++++. .-.| .+.-.+++++++..+++-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~~-----------vsaG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLKL-----------VSAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCce-----------eeccHHHHHHHHHcCCCH
Confidence 68999999999999999999998 2221 123467888988887654
No 276
>PHA00729 NTP-binding motif containing protein
Probab=95.87 E-value=0.013 Score=58.70 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=29.3
Q ss_pred HHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 167 DDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 167 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.++++.+.+.+...|.|+|.+|+||||||.++.+..
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345555666666789999999999999999999875
No 277
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.074 Score=59.44 Aligned_cols=151 Identities=17% Similarity=0.236 Sum_probs=87.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHHhc
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILS 258 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 258 (922)
.=|-++|++|+|||-||++|+|.. +-.| ++|.+. +++..- -..++..+....++.=.
T Consensus 546 sGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGP----ELlNkY-----------VGESErAVR~vFqRAR~ 602 (802)
T KOG0733|consen 546 SGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGP----ELLNKY-----------VGESERAVRQVFQRARA 602 (802)
T ss_pred CceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCH----HHHHHH-----------hhhHHHHHHHHHHHhhc
Confidence 457799999999999999999997 4444 344332 111111 11122222222222334
Q ss_pred CCcEEEEEccCCCcc-------------ccccccccCCC--CCCCcEEEEEcCChhhhcc--c---cccceeecCCCCHH
Q 042817 259 NKKFVLLLDDMWEPV-------------DLTKVGVPIPN--STNASKVVFTTRYKEVCGK--M---EAHKKLRVECLTAD 318 (922)
Q Consensus 259 ~kr~LlVlDdv~~~~-------------~~~~l~~~~~~--~~~gs~IivTtR~~~v~~~--~---~~~~~~~l~~L~~~ 318 (922)
.-++.|+||.++... ....+...+.. ...|--||-.|..+++... + .-+...-++.-+.+
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~ 682 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAE 682 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHH
Confidence 579999999997521 01222222221 2346667777877776432 1 12456777888889
Q ss_pred HHHHHHHHhhCC--CCCCCCCChhHHHHHHHHHhCCch
Q 042817 319 DAWMLFKVKVGE--DTIDSHPEIPKHAQLVAKECGGLP 354 (922)
Q Consensus 319 ea~~Lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~glP 354 (922)
|-..+++..... .....+-++.++++. .+|.|..
T Consensus 683 eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 683 ERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 999999887763 333344556666553 3565554
No 278
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.82 E-value=0.039 Score=57.51 Aligned_cols=35 Identities=26% Similarity=0.300 Sum_probs=29.6
Q ss_pred HHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 168 DAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 168 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+..+++...+..++.|+|.+|.|||||+..+.+..
T Consensus 94 ~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 94 RNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34455555688999999999999999999999986
No 279
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.022 Score=64.52 Aligned_cols=72 Identities=31% Similarity=0.274 Sum_probs=50.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCC--CHHHHHHHHHhhccCCcccccCCChhhhHHHHHHH
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDL--NLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKI 256 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 256 (922)
.-|-|.|+.|+|||+||+++++... +...-++.+|+++.-. .++.+++.+- ..+.+.
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l~-------------------~vfse~ 490 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFLN-------------------NVFSEA 490 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHHHH-------------------HHHHHH
Confidence 4688999999999999999999983 5555667777776542 2333333322 123345
Q ss_pred hcCCcEEEEEccCCC
Q 042817 257 LSNKKFVLLLDDMWE 271 (922)
Q Consensus 257 l~~kr~LlVlDdv~~ 271 (922)
+.-.+-++||||++-
T Consensus 491 ~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 491 LWYAPSIIVLDDLDC 505 (952)
T ss_pred HhhCCcEEEEcchhh
Confidence 567888999999964
No 280
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.79 E-value=0.048 Score=59.76 Aligned_cols=83 Identities=20% Similarity=0.315 Sum_probs=49.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccc---cCCChhhhHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESW---KNKSPVEKSCAI 253 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 253 (922)
.-.++.|.|.+|+|||||+.+++.... ..-..++|++... +..++.. -++.++...+.. ...+.+ .+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a---~~g~~VlYvs~EE--s~~qi~~-Ra~rlg~~~~~l~l~~e~~le----~I 150 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLA---KRGGKVLYVSGEE--SPEQIKL-RADRLGISTENLYLLAETNLE----DI 150 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCc--CHHHHHH-HHHHcCCCcccEEEEccCcHH----HH
Confidence 346999999999999999999988762 2234677887643 3333322 234454332211 111222 23
Q ss_pred HHHh-cCCcEEEEEccC
Q 042817 254 FKIL-SNKKFVLLLDDM 269 (922)
Q Consensus 254 ~~~l-~~kr~LlVlDdv 269 (922)
.+.+ +.+.-++|+|.+
T Consensus 151 ~~~i~~~~~~lVVIDSI 167 (372)
T cd01121 151 LASIEELKPDLVIIDSI 167 (372)
T ss_pred HHHHHhcCCcEEEEcch
Confidence 3333 236668888887
No 281
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.78 E-value=0.06 Score=60.13 Aligned_cols=90 Identities=21% Similarity=0.154 Sum_probs=51.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCC-CCHHHHHHHHHhhccCCcccc-cCCChhhhHHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKD-LNLEKVQEDIGKKIDMFSESW-KNKSPVEKSCAIF 254 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 254 (922)
...+|.++|.+|+||||+|..++... .. ..+ .+..|++... ....+.++.++..++.+.... ...+.........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L-~~-~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF-KK-KGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-HH-cCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 35789999999999999999999887 32 222 3444443321 123445666677766543211 1123333333333
Q ss_pred HHhcCCcEEEEEccCC
Q 042817 255 KILSNKKFVLLLDDMW 270 (922)
Q Consensus 255 ~~l~~kr~LlVlDdv~ 270 (922)
+.+++. =++|+|..-
T Consensus 171 ~~~~~~-DvVIIDTAG 185 (437)
T PRK00771 171 EKFKKA-DVIIVDTAG 185 (437)
T ss_pred HHhhcC-CEEEEECCC
Confidence 333443 568888763
No 282
>PRK10867 signal recognition particle protein; Provisional
Probab=95.74 E-value=0.069 Score=59.52 Aligned_cols=26 Identities=35% Similarity=0.417 Sum_probs=22.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...+|.++|.+|+||||.|..++...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 35799999999999999998888776
No 283
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.72 E-value=0.048 Score=59.29 Aligned_cols=88 Identities=24% Similarity=0.267 Sum_probs=51.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCC-CCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHH
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKD-LNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKI 256 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 256 (922)
-.++.++|+.|+||||++.+++... ..+.....+..++.... ....+-++..++.++.+... ..+..+....+ ..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~-~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~--~~~~~~l~~~l-~~ 212 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC-VMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA--VKDGGDLQLAL-AE 212 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe--cCCcccHHHHH-HH
Confidence 3699999999999999999999886 21212234555553321 23445556666666654421 22222333222 33
Q ss_pred hcCCcEEEEEccCC
Q 042817 257 LSNKKFVLLLDDMW 270 (922)
Q Consensus 257 l~~kr~LlVlDdv~ 270 (922)
+.++ -++++|..-
T Consensus 213 l~~~-DlVLIDTaG 225 (374)
T PRK14722 213 LRNK-HMVLIDTIG 225 (374)
T ss_pred hcCC-CEEEEcCCC
Confidence 4455 456689874
No 284
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.034 Score=66.31 Aligned_cols=102 Identities=22% Similarity=0.270 Sum_probs=71.7
Q ss_pred CcccchhhHHHHHHHHhcc------C--CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHH
Q 042817 157 PRIIGQESIFDDAWRCMIE------E--QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQE 228 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 228 (922)
..++|.++.+..|.+.+.. + ....+-+.|+.|+|||.||++++.-. .+..+..+-++.|.- ++
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~---Fgse~~~IriDmse~------~e 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV---FGSEENFIRLDMSEF------QE 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH---cCCccceEEechhhh------hh
Confidence 4678999999888888763 1 34578899999999999999999887 566666677765543 22
Q ss_pred HHHhhccCCcccccCCChhhhHHHHHHHhcCCcE-EEEEccCCCc
Q 042817 229 DIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKF-VLLLDDMWEP 272 (922)
Q Consensus 229 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~ 272 (922)
+.+.++.+. .....+....|.+.++.++| +|+||||+..
T Consensus 633 -vskligsp~----gyvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 633 -VSKLIGSPP----GYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred -hhhccCCCc----ccccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 444444321 22233444578888888877 7888999764
No 285
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.70 E-value=0.0089 Score=55.02 Aligned_cols=22 Identities=50% Similarity=0.816 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 042817 181 IGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 181 i~I~G~gGiGKTtLa~~v~~~~ 202 (922)
|+|.|++|+||||+|+++....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999883
No 286
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.69 E-value=0.053 Score=57.39 Aligned_cols=88 Identities=26% Similarity=0.303 Sum_probs=47.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCC-CHHHHHHHHHhhccCCcccccCCChhhhHHHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDL-NLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFK 255 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 255 (922)
..++++|+|++|+||||++..++... ..+..-..+..|+..... ...+.+....+.++.+.. ...+..++...+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~-~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l~- 268 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF-VLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELRKALD- 268 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHHH-
Confidence 34699999999999999999998877 222111245556544321 122333334444444331 1223334433333
Q ss_pred HhcCCcEEEEEccC
Q 042817 256 ILSNKKFVLLLDDM 269 (922)
Q Consensus 256 ~l~~kr~LlVlDdv 269 (922)
.+.+ .=+|++|..
T Consensus 269 ~~~~-~d~vliDt~ 281 (282)
T TIGR03499 269 RLRD-KDLILIDTA 281 (282)
T ss_pred HccC-CCEEEEeCC
Confidence 3333 347777753
No 287
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.69 E-value=0.5 Score=52.50 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=23.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...+|.++|.+|+||||+|..++...
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998776
No 288
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.087 Score=61.10 Aligned_cols=132 Identities=16% Similarity=0.166 Sum_probs=77.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKI 256 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 256 (922)
..+.+-++|++|.|||.||+++++.. ...|-.+.. . .+.. .+-..............
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~-----~--------~l~s-------k~vGesek~ir~~F~~A 331 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKG-----S--------ELLS-------KWVGESEKNIRELFEKA 331 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeC-----H--------HHhc-------cccchHHHHHHHHHHHH
Confidence 34578899999999999999999976 444432211 1 1110 11222333333344444
Q ss_pred hcCCcEEEEEccCCCcccc-------------ccccccCC--CCCCCcEEEEEcCChhhhccc-----cccceeecCCCC
Q 042817 257 LSNKKFVLLLDDMWEPVDL-------------TKVGVPIP--NSTNASKVVFTTRYKEVCGKM-----EAHKKLRVECLT 316 (922)
Q Consensus 257 l~~kr~LlVlDdv~~~~~~-------------~~l~~~~~--~~~~gs~IivTtR~~~v~~~~-----~~~~~~~l~~L~ 316 (922)
-+..+..|.+|+++....+ ..+...+. ....+..||-||-........ .-+..+.+++-+
T Consensus 332 ~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd 411 (494)
T COG0464 332 RKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPD 411 (494)
T ss_pred HcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCC
Confidence 5678999999999763221 11222221 122333455556555443311 224578889999
Q ss_pred HHHHHHHHHHhhCCC
Q 042817 317 ADDAWMLFKVKVGED 331 (922)
Q Consensus 317 ~~ea~~Lf~~~~~~~ 331 (922)
.++..+.|..+....
T Consensus 412 ~~~r~~i~~~~~~~~ 426 (494)
T COG0464 412 LEERLEIFKIHLRDK 426 (494)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999887643
No 289
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.60 E-value=0.05 Score=51.92 Aligned_cols=24 Identities=46% Similarity=0.549 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.++.|.|++|+|||||+++++.+.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 578999999999999999999874
No 290
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.59 E-value=0.057 Score=60.12 Aligned_cols=92 Identities=22% Similarity=0.251 Sum_probs=49.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCC-CHHHHHHHHHhhccCCcccc-cCCChhhhHHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDL-NLEKVQEDIGKKIDMFSESW-KNKSPVEKSCAIF 254 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 254 (922)
...++.++|.+|+||||+|..++... ..+..+ .++.|++.... ...+-++..+...+.+.... ...++.+......
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l-~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL-KKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH-HHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 35799999999999999998888775 111122 34444433211 12333444455555432211 1233444443334
Q ss_pred HHhcCCcE-EEEEccCC
Q 042817 255 KILSNKKF-VLLLDDMW 270 (922)
Q Consensus 255 ~~l~~kr~-LlVlDdv~ 270 (922)
+....+.| ++|+|-.-
T Consensus 176 ~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHhcCCCEEEEeCCC
Confidence 44444444 67777653
No 291
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.58 E-value=0.012 Score=54.95 Aligned_cols=43 Identities=19% Similarity=0.296 Sum_probs=31.3
Q ss_pred cchhhHHHHHHHHhcc--CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 160 IGQESIFDDAWRCMIE--EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 160 vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
||.-..++++.+.+.. .....|.|+|..|+||+++|+.++...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 4666666777666643 344567899999999999999999876
No 292
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.58 E-value=0.075 Score=54.83 Aligned_cols=48 Identities=19% Similarity=0.218 Sum_probs=34.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQED 229 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 229 (922)
.-.++.|.|.+|.|||++|.++.... -..-..++||+... +..++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~---~~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEEeeC--CHHHHHHH
Confidence 45799999999999999998876654 12345688888655 45555554
No 293
>PRK07667 uridine kinase; Provisional
Probab=95.57 E-value=0.018 Score=57.21 Aligned_cols=37 Identities=27% Similarity=0.405 Sum_probs=29.2
Q ss_pred HHHHHHHhcc--CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 166 FDDAWRCMIE--EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 166 ~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+.+.+.+.. +...+|+|.|.+|.||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455555543 345799999999999999999999887
No 294
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.57 E-value=0.062 Score=57.67 Aligned_cols=59 Identities=15% Similarity=0.199 Sum_probs=40.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhh---ccCCCceEEEEEeCCCCCHHHHHHHHHhhccC
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQ---ERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDM 236 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 236 (922)
...++.|+|.+|+||||||..++..... ....-..++|++....++...+ .++++.++.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 4579999999999999999988764311 1112236799998887777764 344555443
No 295
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.57 E-value=0.018 Score=64.07 Aligned_cols=44 Identities=11% Similarity=0.184 Sum_probs=38.3
Q ss_pred CcccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 157 PRIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..++||++.++.+...+..+ .-|-|.|++|+|||++|+.+....
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHh
Confidence 46899999999998888654 357799999999999999999976
No 296
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.55 E-value=0.0063 Score=36.21 Aligned_cols=18 Identities=33% Similarity=0.770 Sum_probs=8.8
Q ss_pred CCeeeeccCCccccchhh
Q 042817 588 LQYLNLSSTGIRVLPEEL 605 (922)
Q Consensus 588 L~~L~L~~~~i~~lp~~l 605 (922)
|++|++++|+++.+|+++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 445555555544454443
No 297
>PRK14974 cell division protein FtsY; Provisional
Probab=95.55 E-value=0.095 Score=56.45 Aligned_cols=91 Identities=20% Similarity=0.210 Sum_probs=49.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCC--HHHHHHHHHhhccCCccc-ccCCChhhhH-HH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLN--LEKVQEDIGKKIDMFSES-WKNKSPVEKS-CA 252 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~-~~~~~~~~~~-~~ 252 (922)
+..+|.++|++|+||||++..++... . ...+ .++.+.. ..+. ..+-++..+..++.+... ....+..... ..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l-~-~~g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL-K-KNGF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 45799999999999999999888876 2 2233 3334432 2222 233345566666654311 1122333322 22
Q ss_pred HHHHhcCCcEEEEEccCCC
Q 042817 253 IFKILSNKKFVLLLDDMWE 271 (922)
Q Consensus 253 l~~~l~~kr~LlVlDdv~~ 271 (922)
+...-....=++++|-.-.
T Consensus 215 i~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHHhCCCCEEEEECCCc
Confidence 2221222223889998743
No 298
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.53 E-value=0.053 Score=58.52 Aligned_cols=59 Identities=17% Similarity=0.168 Sum_probs=42.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhh---ccCCCceEEEEEeCCCCCHHHHHHHHHhhccC
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQ---ERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDM 236 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 236 (922)
.-+++-|+|.+|+|||+|+..++-.... ....-..++||+....++.+++.+ +++.++.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 4468889999999999999887643311 112234789999999999888654 5565554
No 299
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.53 E-value=0.012 Score=47.29 Aligned_cols=23 Identities=43% Similarity=0.749 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+|+|.|.+|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999884
No 300
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.52 E-value=0.14 Score=55.20 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.-+-++|+.|+||||+|+.++...
T Consensus 22 hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 22 NAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred eEEEeECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999998875
No 301
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.51 E-value=0.012 Score=58.72 Aligned_cols=83 Identities=18% Similarity=0.164 Sum_probs=44.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCc---eEEEEEeCCCCCHHHHHHHHHhh-ccCCcccccCCChhhhHHHHHH
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKLCQERHDFD---IVIWVVVSKDLNLEKVQEDIGKK-IDMFSESWKNKSPVEKSCAIFK 255 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~---~~~wv~~s~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~~~~~~l~~ 255 (922)
||+|.|.+|+||||+|+.+..... ..... ....+..............-... -..........+.+.+.+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~--~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN--KRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT--TCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC--ccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHH
Confidence 799999999999999999999982 12222 23333322222222222111110 0111122244566666777776
Q ss_pred HhcCCcEEE
Q 042817 256 ILSNKKFVL 264 (922)
Q Consensus 256 ~l~~kr~Ll 264 (922)
..+++..-+
T Consensus 79 L~~g~~i~~ 87 (194)
T PF00485_consen 79 LKNGGSIEI 87 (194)
T ss_dssp HHTTSCEEE
T ss_pred HhCCCcccc
Confidence 656665443
No 302
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.50 E-value=0.08 Score=50.69 Aligned_cols=118 Identities=19% Similarity=0.206 Sum_probs=63.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEE---EeCCCCCHHHHHHHHHhhccCCcc--cccCCCh------
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWV---VVSKDLNLEKVQEDIGKKIDMFSE--SWKNKSP------ 246 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv---~~s~~~~~~~~~~~i~~~l~~~~~--~~~~~~~------ 246 (922)
...|-|++..|.||||.|..++-+.. ...+. ++.+ --.....-...++...-.+..... .+...+.
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~--~~g~~-v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRAL--GHGKK-VGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHH--HCCCe-EEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHH
Confidence 35788899999999999988887762 33333 2222 222223333444433111100000 1111111
Q ss_pred -hhhHHHHHHHhcCCcE-EEEEccCCCc-----cccccccccCCCCCCCcEEEEEcCCh
Q 042817 247 -VEKSCAIFKILSNKKF-VLLLDDMWEP-----VDLTKVGVPIPNSTNASKVVFTTRYK 298 (922)
Q Consensus 247 -~~~~~~l~~~l~~kr~-LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~IivTtR~~ 298 (922)
.+.....++.+...+| |+|||.+-.. .+.+++...+.....+..||+|-|+.
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 1222344555555555 9999998532 23334444444455677899999976
No 303
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=0.0016 Score=62.23 Aligned_cols=86 Identities=23% Similarity=0.361 Sum_probs=56.2
Q ss_pred cceeeecccCCcceeecccccccCCCCCccCCcccEEEEecCCCCCCCc--hhh-ccCCCcEEEEeccccchhhhccccc
Q 042817 725 LRNLFIADSSFEKLQIDCVGEIRKTPETSRFHNLHRVGIVNCKSLKDIT--WLI-FAPNLRILEISYCFEMTEIISQAKV 801 (922)
Q Consensus 725 L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~-~l~~L~~L~L~~c~~l~~i~~~~~~ 801 (922)
++.++-+++.+.....+.+.. ++.++.|.+.+|..+.+.. .++ ..|+|+.|+|++|+.|++-..
T Consensus 103 IeaVDAsds~I~~eGle~L~~---------l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL---- 169 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRD---------LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL---- 169 (221)
T ss_pred EEEEecCCchHHHHHHHHHhc---------cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH----
Confidence 444555555544443444432 7778888888887776642 233 468888888888888876533
Q ss_pred ccccccCCCCCCccCCccceeecCccccccc
Q 042817 802 DEFGATAGNHHQIPFAKLESLKLARLPNLES 832 (922)
Q Consensus 802 ~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~ 832 (922)
..+..|++|+.|.|.+++....
T Consensus 170 ---------~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 170 ---------ACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred ---------HHHHHhhhhHHHHhcCchhhhc
Confidence 3566788888888888776544
No 304
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.44 E-value=0.071 Score=50.82 Aligned_cols=124 Identities=19% Similarity=0.206 Sum_probs=69.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEE---eC------------------CCC--------------
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVV---VS------------------KDL-------------- 221 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~---~s------------------~~~-------------- 221 (922)
.-.++.++|++|.||||+.+.+|.... .-.+.+|+. ++ +++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~----pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~ 102 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEER----PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVAL 102 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhc----CCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhh
Confidence 446899999999999999999998872 222344442 11 111
Q ss_pred -------CHHHHHHHHHhhc---cCCccc---c-cCCChhhhHHHHHHHhcCCcEEEEEccCC----CccccccccccCC
Q 042817 222 -------NLEKVQEDIGKKI---DMFSES---W-KNKSPVEKSCAIFKILSNKKFVLLLDDMW----EPVDLTKVGVPIP 283 (922)
Q Consensus 222 -------~~~~~~~~i~~~l---~~~~~~---~-~~~~~~~~~~~l~~~l~~kr~LlVlDdv~----~~~~~~~l~~~~~ 283 (922)
...++.+.+...+ +..... + +-..-++..-.|.+.+-+++-+|+=|.-- ....|+-+...-.
T Consensus 103 pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfee 182 (223)
T COG2884 103 PLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEE 182 (223)
T ss_pred hhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHH
Confidence 1233333333332 221110 0 11122233335666777888899999653 2233332211111
Q ss_pred CCCCCcEEEEEcCChhhhccc
Q 042817 284 NSTNASKVVFTTRYKEVCGKM 304 (922)
Q Consensus 284 ~~~~gs~IivTtR~~~v~~~~ 304 (922)
-+..|..||++|.+.++...+
T Consensus 183 inr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 183 INRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred HhhcCcEEEEEeccHHHHHhc
Confidence 234689999999999987665
No 305
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.41 E-value=0.022 Score=58.44 Aligned_cols=27 Identities=37% Similarity=0.594 Sum_probs=24.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 176 EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 176 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
....+++|.|++|.|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999999887
No 306
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.40 E-value=0.055 Score=55.08 Aligned_cols=123 Identities=15% Similarity=0.120 Sum_probs=70.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCC-----CCCHHHHHHHHHhhccCCcccc----cCCChh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSK-----DLNLEKVQEDIGKKIDMFSESW----KNKSPV 247 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-----~~~~~~~~~~i~~~l~~~~~~~----~~~~~~ 247 (922)
+-.+++|+|..|.||||+++.+..-. ..-.+.+++.-.+ .....+-..++++.++...+.. ..-+..
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~----~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE----EPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc----CCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 44699999999999999999998776 2233444443222 1123334455555555443211 111222
Q ss_pred hhH-HHHHHHhcCCcEEEEEccCCCcccc------ccccccCCCCCCCcEEEEEcCChhhhccc
Q 042817 248 EKS-CAIFKILSNKKFVLLLDDMWEPVDL------TKVGVPIPNSTNASKVVFTTRYKEVCGKM 304 (922)
Q Consensus 248 ~~~-~~l~~~l~~kr~LlVlDdv~~~~~~------~~l~~~~~~~~~gs~IivTtR~~~v~~~~ 304 (922)
+.+ -.|.+.|.-++-|+|.|..-+.-+. ..+...+ ....|-..+.-|-+-.++..+
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dl-q~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDL-QEELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHH-HHHhCCeEEEEEEEHHhhhhh
Confidence 222 3567788899999999987554221 1111111 112355677777777776654
No 307
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.40 E-value=0.034 Score=55.36 Aligned_cols=32 Identities=41% Similarity=0.563 Sum_probs=25.7
Q ss_pred HHhccCCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 171 RCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 171 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..+...+-++..|.|.+|.||||+++.+....
T Consensus 11 ~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~ 42 (196)
T PF13604_consen 11 RAILTSGDRVSVLQGPAGTGKTTLLKALAEAL 42 (196)
T ss_dssp HHHHHCTCSEEEEEESTTSTHHHHHHHHHHHH
T ss_pred HHHHhcCCeEEEEEECCCCCHHHHHHHHHHHH
Confidence 33333455788999999999999999998887
No 308
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.39 E-value=0.06 Score=49.44 Aligned_cols=113 Identities=22% Similarity=0.407 Sum_probs=39.5
Q ss_pred ccceEEeeecccccccccc--cCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccC-ccccCcccCCeee
Q 042817 516 KGVKRMSLMNNKIRNLSEP--ATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFP-PGISKLISLQYLN 592 (922)
Q Consensus 516 ~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~ 592 (922)
.+++.+.+.. .+..+... ..+++|+.+.+.++ +..++...|.+++.|+.+.+.++ +..++ ..+..+.+|+.++
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTECEEE
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--ccccccccccccccccccc
Confidence 3445554442 23333222 34555566655543 55555555555555666666432 22222 2234455555555
Q ss_pred eccCCccccch-hhccCCCCCEEeCCCCccccccChhhhCCCCCC
Q 042817 593 LSSTGIRVLPE-ELKALKDLSYLNMERTSFVRRIPRQLISNFPLL 636 (922)
Q Consensus 593 L~~~~i~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L 636 (922)
+..+ +..++. .+.+. +|+.+.+..+ +..++...+.++++|
T Consensus 88 ~~~~-~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 88 IPSN-ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKL 128 (129)
T ss_dssp ETTT--BEEHTTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred cCcc-ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccC
Confidence 5443 444433 23333 5555555442 344444444444444
No 309
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.37 E-value=0.072 Score=57.62 Aligned_cols=57 Identities=19% Similarity=0.323 Sum_probs=41.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccC----CCceEEEEEeCCCCCHHHHHHHHHhhcc
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERH----DFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (922)
.-.++-|+|.+|+|||++|.+++... .... .=..++||+....++...+.+ +++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~-~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNV-QLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHh-ccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 35688999999999999999887664 1111 114799999998888777654 344443
No 310
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.34 E-value=0.021 Score=53.76 Aligned_cols=35 Identities=34% Similarity=0.283 Sum_probs=27.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEE
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVV 216 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 216 (922)
.+|.|+|.+|.||||||+++.... . ..-..+++++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L-~--~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRL-F--ARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH-H--HTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH-H--HcCCcEEEec
Confidence 589999999999999999999998 2 2334556664
No 311
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.31 E-value=0.042 Score=53.93 Aligned_cols=127 Identities=20% Similarity=0.180 Sum_probs=64.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCccc------------ccCC
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSES------------WKNK 244 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~------------~~~~ 244 (922)
.-.+++|+|..|.|||||++.++.... .-.+.+++.-. ++......+...++..... ....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~L 99 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLK----PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRF 99 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC----CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccC
Confidence 336899999999999999999988751 22334443211 1111111121222111000 0011
Q ss_pred Ch-hhhHHHHHHHhcCCcEEEEEccCCCcccc---ccccccCCCCCCCcEEEEEcCChhhhccccccceeec
Q 042817 245 SP-VEKSCAIFKILSNKKFVLLLDDMWEPVDL---TKVGVPIPNSTNASKVVFTTRYKEVCGKMEAHKKLRV 312 (922)
Q Consensus 245 ~~-~~~~~~l~~~l~~kr~LlVlDdv~~~~~~---~~l~~~~~~~~~gs~IivTtR~~~v~~~~~~~~~~~l 312 (922)
+. +...-.+.+.+-.++=++++|+....-|. +.+...+.....+..||++|.+.+.... .++.+.+
T Consensus 100 S~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 11 11122345556677889999998654321 1111111111235678888888776542 3444443
No 312
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.088 Score=62.00 Aligned_cols=151 Identities=17% Similarity=0.227 Sum_probs=87.3
Q ss_pred cccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCC------ceEEEEEeCCCCCHHHHHHHHH
Q 042817 158 RIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDF------DIVIWVVVSKDLNLEKVQEDIG 231 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F------~~~~wv~~s~~~~~~~~~~~i~ 231 (922)
.++||+++++++++.|....-.=-.++|.+|+|||++|.-++.+. . .+.- ..++-.+ +.
T Consensus 171 PvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rI-v-~g~VP~~L~~~~i~sLD-------------~g 235 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRI-V-NGDVPESLKDKRIYSLD-------------LG 235 (786)
T ss_pred CCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHH-h-cCCCCHHHcCCEEEEec-------------HH
Confidence 369999999999999975322223468999999999998888886 2 2211 1111111 11
Q ss_pred hhccCCcccccCCChhhhHHHHHHHhc-CCcEEEEEccCCCcc----------ccccccccCCCCCCC-cEEEEEcCChh
Q 042817 232 KKIDMFSESWKNKSPVEKSCAIFKILS-NKKFVLLLDDMWEPV----------DLTKVGVPIPNSTNA-SKVVFTTRYKE 299 (922)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~----------~~~~l~~~~~~~~~g-s~IivTtR~~~ 299 (922)
.-... .+ -..+.+++.+.+.+.++ .++..|++|.+.... +-..+..|-. ..| -++|-.|...+
T Consensus 236 ~LvAG--ak-yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL--ARGeL~~IGATT~~E 310 (786)
T COG0542 236 SLVAG--AK-YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL--ARGELRCIGATTLDE 310 (786)
T ss_pred HHhcc--cc-ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH--hcCCeEEEEeccHHH
Confidence 11111 11 23345555555555554 458999999997631 1112222221 233 34554444333
Q ss_pred hhc-------cccccceeecCCCCHHHHHHHHHHhh
Q 042817 300 VCG-------KMEAHKKLRVECLTADDAWMLFKVKV 328 (922)
Q Consensus 300 v~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~~ 328 (922)
--+ .....+.+.++..+.+++..+++-..
T Consensus 311 YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 311 YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 211 11234678899999999999987654
No 313
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.31 E-value=0.04 Score=53.60 Aligned_cols=124 Identities=13% Similarity=0.096 Sum_probs=63.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhc--cC---CCc--eEEEEEeCCCCCHHHHHHHHHhhccCCcc----cccCCC
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQE--RH---DFD--IVIWVVVSKDLNLEKVQEDIGKKIDMFSE----SWKNKS 245 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~---~F~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----~~~~~~ 245 (922)
.-.+++|+|+.|.|||||.+.+..+...+ .. .|. .+.|+. + .+.++.++.... .....+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~--q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFID--Q--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEh--H--------HHHHHHcCCCccccCCCcCcCC
Confidence 34689999999999999999986432111 00 010 123321 1 345555554321 111111
Q ss_pred hh-hhHHHHHHHhcCC--cEEEEEccCCCccc---cccccccCCC-CCCCcEEEEEcCChhhhccccccceeec
Q 042817 246 PV-EKSCAIFKILSNK--KFVLLLDDMWEPVD---LTKVGVPIPN-STNASKVVFTTRYKEVCGKMEAHKKLRV 312 (922)
Q Consensus 246 ~~-~~~~~l~~~l~~k--r~LlVlDdv~~~~~---~~~l~~~~~~-~~~gs~IivTtR~~~v~~~~~~~~~~~l 312 (922)
.. ...-.+...+-.+ +-++++|+.-..-+ .+.+...+.. ...|..||++|.+.+.... .+..+.+
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 11 1222344455556 77888999855322 1112111111 1236668888888776542 4445544
No 314
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.29 E-value=0.038 Score=60.21 Aligned_cols=74 Identities=22% Similarity=0.283 Sum_probs=47.6
Q ss_pred CcccchhhHHHHHHHHhccC--------------CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCC---ceEEEEEe-C
Q 042817 157 PRIIGQESIFDDAWRCMIEE--------------QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDF---DIVIWVVV-S 218 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~--------------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F---~~~~wv~~-s 218 (922)
..++|.++.+..+.-.+... ..+-|.++|++|+|||++|++++... ...| +..-+... .
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l---~~~fi~vdat~~~e~g~ 88 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATKFTEVGY 88 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEeecceeecCCc
Confidence 46899988888876555421 13578899999999999999999987 3333 22222221 1
Q ss_pred CCCCHHHHHHHHHhh
Q 042817 219 KDLNLEKVQEDIGKK 233 (922)
Q Consensus 219 ~~~~~~~~~~~i~~~ 233 (922)
...+.+.+.+.+...
T Consensus 89 vG~dvE~i~r~l~e~ 103 (441)
T TIGR00390 89 VGRDVESMVRDLTDA 103 (441)
T ss_pred ccCCHHHHHHHHHHH
Confidence 223566666555543
No 315
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.29 E-value=0.11 Score=54.64 Aligned_cols=27 Identities=33% Similarity=0.362 Sum_probs=23.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 176 EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 176 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
....+|||.|..|+||||+|+.+..-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345799999999999999998887665
No 316
>PRK08233 hypothetical protein; Provisional
Probab=95.29 E-value=0.015 Score=57.32 Aligned_cols=25 Identities=44% Similarity=0.585 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..+|+|.|.+|+||||+|+.++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999999876
No 317
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.27 E-value=0.96 Score=49.29 Aligned_cols=58 Identities=17% Similarity=0.182 Sum_probs=38.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCC--CHHHHHHHHHhhccCCc
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDL--NLEKVQEDIGKKIDMFS 238 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~ 238 (922)
...||-.+|.-|.||||.|-.+++... . ....+-+...+.+ ...+-++.++++++.+.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lk-k---~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~ 158 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLK-K---KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPF 158 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHH-H---cCCceEEEecccCChHHHHHHHHHHHHcCCce
Confidence 356899999999999999999999883 2 2222233333332 34455677777776554
No 318
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.26 E-value=0.028 Score=59.00 Aligned_cols=89 Identities=24% Similarity=0.348 Sum_probs=51.7
Q ss_pred HHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCCh
Q 042817 167 DDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSP 246 (922)
Q Consensus 167 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 246 (922)
..+++.+...+ +-+-++|+.|+|||++++...... . ...| .+.-++.+...+...+++.|-..+...... .-.+
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l-~-~~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~--~~gP 96 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSL-D-SDKY-LVITINFSAQTTSNQLQKIIESKLEKRRGR--VYGP 96 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCS-T-TCCE-EEEEEES-TTHHHHHHHHCCCTTECECTTE--EEEE
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccC-C-cccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCCC--CCCC
Confidence 45566666555 455799999999999999988765 1 2222 244566666655555554333332211100 0000
Q ss_pred hhhHHHHHHHhcCCcEEEEEccCCC
Q 042817 247 VEKSCAIFKILSNKKFVLLLDDMWE 271 (922)
Q Consensus 247 ~~~~~~l~~~l~~kr~LlVlDdv~~ 271 (922)
-.+|+.++++||+.-
T Consensus 97 ----------~~~k~lv~fiDDlN~ 111 (272)
T PF12775_consen 97 ----------PGGKKLVLFIDDLNM 111 (272)
T ss_dssp ----------ESSSEEEEEEETTT-
T ss_pred ----------CCCcEEEEEecccCC
Confidence 136899999999954
No 319
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.23 E-value=0.04 Score=61.90 Aligned_cols=102 Identities=17% Similarity=0.170 Sum_probs=55.1
Q ss_pred HHHHHhcc-CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEE-EeCCC-CCHHHHHHHHHhhccCCcccc---
Q 042817 168 DAWRCMIE-EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWV-VVSKD-LNLEKVQEDIGKKIDMFSESW--- 241 (922)
Q Consensus 168 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv-~~s~~-~~~~~~~~~i~~~l~~~~~~~--- 241 (922)
++++.+.. ..-....|+|++|+|||||++.+++... ..+-+..++| -|... -.+.++.+.+-..+-..+.+.
T Consensus 405 RvIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~--~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~ 482 (672)
T PRK12678 405 RVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAIT--TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS 482 (672)
T ss_pred eeeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHh--hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHH
Confidence 34444432 2345788999999999999999999762 2233433333 33333 234445444411121111000
Q ss_pred cCCChhhhHHHHHHHh--cCCcEEEEEccCCC
Q 042817 242 KNKSPVEKSCAIFKIL--SNKKFVLLLDDMWE 271 (922)
Q Consensus 242 ~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~ 271 (922)
.........-.+.+++ .++.+||++|++-.
T Consensus 483 ~~~~~a~~ai~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 483 DHTTVAELAIERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCchH
Confidence 0011122233445555 57999999999843
No 320
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.22 E-value=0.1 Score=56.57 Aligned_cols=89 Identities=20% Similarity=0.204 Sum_probs=49.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCC-CHHHHHHHHHhhccCCcccccCCChhhhHHHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDL-NLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFK 255 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 255 (922)
+.++|+++|++|+||||++..++... . ...+ .+..++..... ...+-++..++.++.+.. ...+...+.+.+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L-~-~~Gk-kVglI~aDt~RiaAvEQLk~yae~lgipv~--v~~d~~~L~~aL~~ 314 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF-H-GKKK-TVGFITTDHSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRALTY 314 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH-H-HcCC-cEEEEecCCcchHHHHHHHHHhhhcCCcEE--ecCCHHHHHHHHHH
Confidence 34799999999999999999998877 2 2222 34455543221 122223344444444321 12345555444433
Q ss_pred HhcC-CcEEEEEccCC
Q 042817 256 ILSN-KKFVLLLDDMW 270 (922)
Q Consensus 256 ~l~~-kr~LlVlDdv~ 270 (922)
.-.. +.=++++|-.-
T Consensus 315 lk~~~~~DvVLIDTaG 330 (436)
T PRK11889 315 FKEEARVDYILIDTAG 330 (436)
T ss_pred HHhccCCCEEEEeCcc
Confidence 3221 23477788764
No 321
>PTZ00301 uridine kinase; Provisional
Probab=95.20 E-value=0.019 Score=57.57 Aligned_cols=25 Identities=36% Similarity=0.676 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..+|+|.|.+|.||||+|+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999998776
No 322
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.19 E-value=0.088 Score=53.42 Aligned_cols=23 Identities=43% Similarity=0.614 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+|+|.|.+|+||||+|+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999887
No 323
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.17 E-value=0.094 Score=54.05 Aligned_cols=88 Identities=14% Similarity=0.219 Sum_probs=54.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCccc----------------
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSES---------------- 240 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---------------- 240 (922)
.-+++.|+|.+|+|||++|.++..... + .=..++|++.... ..++.+++ .+++....+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~--~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGAL--K-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHH--h-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 457999999999999999999866541 2 2357888888654 45555543 233321110
Q ss_pred --ccCCChhhhHHHHHHHhcC-CcEEEEEccCC
Q 042817 241 --WKNKSPVEKSCAIFKILSN-KKFVLLLDDMW 270 (922)
Q Consensus 241 --~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~ 270 (922)
.......+....+.+.+.. +.-++|+|.+.
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112234555666666654 55588899874
No 324
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.17 E-value=0.23 Score=50.29 Aligned_cols=209 Identities=11% Similarity=0.135 Sum_probs=113.7
Q ss_pred cccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhh---hccCCCceEEEEEeCCC----------C---
Q 042817 158 RIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLC---QERHDFDIVIWVVVSKD----------L--- 221 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~~F~~~~wv~~s~~----------~--- 221 (922)
...++++...++......+..+-+-++|+.|.||-|.+..+.++.= ..+-.-+..-|.+-|.. .
T Consensus 14 ~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlE 93 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLE 93 (351)
T ss_pred hcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEE
Confidence 3567777777777776666678889999999999999988877751 01112334445443322 0
Q ss_pred --------CHHHHHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcE-EEEEccCCCc--cccccccccCCCCCCCcE
Q 042817 222 --------NLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKF-VLLLDDMWEP--VDLTKVGVPIPNSTNASK 290 (922)
Q Consensus 222 --------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ 290 (922)
.-+.+.++++++++....- +.-.++.| ++|+-.+++. +.-..+......-...+|
T Consensus 94 itPSDaG~~DRvViQellKevAQt~qi--------------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~R 159 (351)
T KOG2035|consen 94 ITPSDAGNYDRVVIQELLKEVAQTQQI--------------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCR 159 (351)
T ss_pred eChhhcCcccHHHHHHHHHHHHhhcch--------------hhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCce
Confidence 1122333333333221100 00112344 4555555442 112222222222234567
Q ss_pred EEEEcCCh-hh-hccccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHHHhhhccC-
Q 042817 291 VVFTTRYK-EV-CGKMEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITIGRAMSCK- 367 (922)
Q Consensus 291 IivTtR~~-~v-~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~- 367 (922)
+|+...+- .+ ...-+.--.++++..+++|-...++..+.......+ .+++++|+++++|.---...+-..++-+
T Consensus 160 lIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~~n 236 (351)
T KOG2035|consen 160 LILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAVRVNN 236 (351)
T ss_pred EEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHHHhcc
Confidence 66643321 11 111112235789999999999999988766653333 7899999999998753222222222111
Q ss_pred ---------CCHHHHHHHHHHHhcc
Q 042817 368 ---------NKLEEWKHAVNVLKKS 383 (922)
Q Consensus 368 ---------~~~~~w~~~~~~l~~~ 383 (922)
-...+|+....+....
T Consensus 237 ~~~~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 237 EPFTANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred ccccccCCCCCCccHHHHHHHHHHH
Confidence 2345799887766544
No 325
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.17 E-value=0.039 Score=49.35 Aligned_cols=45 Identities=16% Similarity=0.280 Sum_probs=33.5
Q ss_pred cccchhhHHHHHHHHhc----c---CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 158 RIIGQESIFDDAWRCMI----E---EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~----~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+++|..-..+.+++.+. + ++.-|++.+|++|+|||.+|+.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 45676655555555543 3 245699999999999999999999884
No 326
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.14 E-value=0.11 Score=53.42 Aligned_cols=46 Identities=26% Similarity=0.292 Sum_probs=32.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQ 227 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 227 (922)
.-.++.|.|.+|+||||+|.++..... ..-..++|++... +..++.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~e~--~~~~i~ 64 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTTEE--SRESII 64 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEccC--CHHHHH
Confidence 347999999999999999998776541 1234678887643 344443
No 327
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.13 E-value=0.081 Score=55.21 Aligned_cols=125 Identities=14% Similarity=0.098 Sum_probs=69.5
Q ss_pred HHHHHHHhcc-CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEE---eCCCCCHHHHHHHHHhhccC-Cccc
Q 042817 166 FDDAWRCMIE-EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVV---VSKDLNLEKVQEDIGKKIDM-FSES 240 (922)
Q Consensus 166 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~---~s~~~~~~~~~~~i~~~l~~-~~~~ 240 (922)
.+.++..|.+ ....-++|+|+.|.|||||.+.+..... ...+.+++. +...... .+++..... +...
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~----~~~G~i~~~g~~v~~~d~~----~ei~~~~~~~~q~~ 169 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS----TGISQLGLRGKKVGIVDER----SEIAGCVNGVPQHD 169 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC----CCCceEEECCEEeecchhH----HHHHHHhccccccc
Confidence 4445555543 3456899999999999999999998762 223344442 2111112 233322211 1110
Q ss_pred c----cCCChhhhHHHHHHHhc-CCcEEEEEccCCCccccccccccCCCCCCCcEEEEEcCChhhh
Q 042817 241 W----KNKSPVEKSCAIFKILS-NKKFVLLLDDMWEPVDLTKVGVPIPNSTNASKVVFTTRYKEVC 301 (922)
Q Consensus 241 ~----~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTtR~~~v~ 301 (922)
. +..+.......+...+. ..+=++++|.+-..+.+..+...+ ..|..||+||-+..+.
T Consensus 170 ~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 170 VGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDVE 232 (270)
T ss_pred ccccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHHH
Confidence 0 01111111223444443 578899999997766665554443 2467799999876553
No 328
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.10 E-value=0.032 Score=54.47 Aligned_cols=127 Identities=15% Similarity=0.174 Sum_probs=63.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCC--CCCHHHHHHHHHhhccCCcccccC------CC-hh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSK--DLNLEKVQEDIGKKIDMFSESWKN------KS-PV 247 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~--~~~~~~~~~~i~~~l~~~~~~~~~------~~-~~ 247 (922)
.-.+++|+|..|.|||||++.++... ....+.+++.-.. ........+.+.-....+ .-... .+ .+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~-~~~~~tv~~~lLS~G~ 101 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL----RPTSGRVRLDGADISQWDPNELGDHVGYLPQDD-ELFSGSIAENILSGGQ 101 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc----CCCCCeEEECCEEcccCCHHHHHhheEEECCCC-ccccCcHHHHCcCHHH
Confidence 33589999999999999999998875 1233444432111 111222211111100000 00000 01 11
Q ss_pred hhHHHHHHHhcCCcEEEEEccCCCccc------cccccccCCCCCCCcEEEEEcCChhhhccccccceeec
Q 042817 248 EKSCAIFKILSNKKFVLLLDDMWEPVD------LTKVGVPIPNSTNASKVVFTTRYKEVCGKMEAHKKLRV 312 (922)
Q Consensus 248 ~~~~~l~~~l~~kr~LlVlDdv~~~~~------~~~l~~~~~~~~~gs~IivTtR~~~v~~~~~~~~~~~l 312 (922)
...-.+...+-.++=++++|+.-..-| +.++...+. ..|..||++|.+.+.... .++++.+
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~~--~d~v~~l 168 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK--AAGATRIVIAHRPETLAS--ADRILVL 168 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 122234555666777999999865422 112222221 236678888888776542 3444444
No 329
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.10 E-value=0.11 Score=54.46 Aligned_cols=90 Identities=24% Similarity=0.257 Sum_probs=49.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHH--HHHHHHHhhccCCccc-ccCCChhhh-HHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLE--KVQEDIGKKIDMFSES-WKNKSPVEK-SCA 252 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~--~~~~~i~~~l~~~~~~-~~~~~~~~~-~~~ 252 (922)
+.+++.++|++|+||||++..++... . ..-..+..++... +... +-+...++..+.+.-. ....++... ...
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l-~--~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL-K--KQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-H--hcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 45799999999999999999998877 2 2223556665442 2222 2233344444432110 011223222 233
Q ss_pred HHHHhcCCcEEEEEccCC
Q 042817 253 IFKILSNKKFVLLLDDMW 270 (922)
Q Consensus 253 l~~~l~~kr~LlVlDdv~ 270 (922)
+........=++++|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 333333445578888764
No 330
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.10 E-value=0.021 Score=57.76 Aligned_cols=26 Identities=38% Similarity=0.597 Sum_probs=23.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+..+|+|.|.+|+||||||+.++...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999876
No 331
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.27 Score=48.97 Aligned_cols=53 Identities=21% Similarity=0.352 Sum_probs=39.4
Q ss_pred ccccCCC--CcccchhhHHHHHHHHhcc-------------CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 150 IEEMPIE--PRIIGQESIFDDAWRCMIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 150 ~~~~~~~--~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
++++|++ +.+=|.+..++++++.+.- ...+-+-.+|++|.|||-+|++.+..-
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT 229 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT 229 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc
Confidence 4455543 3567889999999887631 123457789999999999999988775
No 332
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.08 E-value=0.02 Score=53.85 Aligned_cols=23 Identities=48% Similarity=0.713 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 57899999999999999999876
No 333
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.08 E-value=0.24 Score=53.50 Aligned_cols=90 Identities=26% Similarity=0.228 Sum_probs=54.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCC-CHHHHHHHHHhhccCCcccccCCChhhhHHHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDL-NLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFK 255 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 255 (922)
+.+++.|+|+.|+||||++..++... ...+ ..+.+|+..... ...+-++..++.++.+.. ...+..++...+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l-~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~~ 279 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL-LKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQY 279 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHHH
Confidence 45799999999999999999998776 2222 356667654332 234445566666665432 23345555444433
Q ss_pred Hhc-CCcEEEEEccCCC
Q 042817 256 ILS-NKKFVLLLDDMWE 271 (922)
Q Consensus 256 ~l~-~kr~LlVlDdv~~ 271 (922)
.-. +..=++++|-.-.
T Consensus 280 l~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 280 MTYVNCVDHILIDTVGR 296 (407)
T ss_pred HHhcCCCCEEEEECCCC
Confidence 221 3446788887743
No 334
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.08 E-value=0.03 Score=54.50 Aligned_cols=23 Identities=48% Similarity=0.652 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.|.|.|.+|.||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 335
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.08 E-value=0.095 Score=54.50 Aligned_cols=90 Identities=19% Similarity=0.238 Sum_probs=55.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhh-ccCCcccccCCChhhh---HHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKK-IDMFSESWKNKSPVEK---SCA 252 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~~~---~~~ 252 (922)
.-+++=|+|+.|.||||+|.+++-.. ...-..++|++..+.++++.+.. ++.. +..-. -....+.++. ++.
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~-v~~~~~~e~q~~i~~~ 133 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLL-VSQPDTGEQQLEIAEK 133 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHH-HHHhhhccee-EecCCCHHHHHHHHHH
Confidence 45799999999999999998876665 23334889999999999877543 3333 21100 0022223322 233
Q ss_pred HHHHhcCCcEEEEEccCCC
Q 042817 253 IFKILSNKKFVLLLDDMWE 271 (922)
Q Consensus 253 l~~~l~~kr~LlVlDdv~~ 271 (922)
+......+--|+|+|.|-.
T Consensus 134 ~~~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 134 LARSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HHHhccCCCCEEEEecCcc
Confidence 3333334456999998843
No 336
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.07 E-value=0.022 Score=57.43 Aligned_cols=26 Identities=38% Similarity=0.611 Sum_probs=23.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...+|+|+|++|+||||||+.++...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999876
No 337
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.06 E-value=0.019 Score=58.43 Aligned_cols=22 Identities=50% Similarity=0.676 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 042817 181 IGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 181 i~I~G~gGiGKTtLa~~v~~~~ 202 (922)
|.|+|++|+||||+|+.++...
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999999886
No 338
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.03 E-value=0.13 Score=54.74 Aligned_cols=87 Identities=15% Similarity=0.172 Sum_probs=53.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccc---cCCChhhhHHHHH
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESW---KNKSPVEKSCAIF 254 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~ 254 (922)
-+++-|+|+.|+||||||..+.... . ..-...+||+....++... ++.++...+.. .....++....+.
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~-q--~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEA-Q--KQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH-H--HTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhh-h--cccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHH
Confidence 4699999999999999999888776 2 2245689999888776543 33334332221 2234455556666
Q ss_pred HHhcCC-cEEEEEccCCCc
Q 042817 255 KILSNK-KFVLLLDDMWEP 272 (922)
Q Consensus 255 ~~l~~k-r~LlVlDdv~~~ 272 (922)
+.++.. --++|+|-|-..
T Consensus 125 ~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHHTTSESEEEEE-CTT-
T ss_pred HHhhcccccEEEEecCccc
Confidence 666543 448999998653
No 339
>PRK06762 hypothetical protein; Provisional
Probab=95.03 E-value=0.022 Score=55.24 Aligned_cols=24 Identities=46% Similarity=0.682 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+|.|+|++|+||||+|+.+.+..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999876
No 340
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.01 E-value=0.59 Score=50.16 Aligned_cols=49 Identities=14% Similarity=0.148 Sum_probs=34.3
Q ss_pred eeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHH
Q 042817 309 KLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAI 357 (922)
Q Consensus 309 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 357 (922)
.+++++++.+|+..++...+...-.......+...+++.--.+|.|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999887754432222333555666666668888543
No 341
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.01 E-value=0.06 Score=59.43 Aligned_cols=90 Identities=21% Similarity=0.317 Sum_probs=53.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCC-CHHHHHHHHHhhccCCccc----ccCCCh-----
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDL-NLEKVQEDIGKKIDMFSES----WKNKSP----- 246 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~----- 246 (922)
.-..++|+|..|+|||||++.+.+.. ..+.++.+-+.+.. .+.++.+.++..-+..... ..+...
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 34689999999999999999988654 22556666565443 3455666654432211100 011111
Q ss_pred -hhhHHHHHHHh--cCCcEEEEEccCCC
Q 042817 247 -VEKSCAIFKIL--SNKKFVLLLDDMWE 271 (922)
Q Consensus 247 -~~~~~~l~~~l--~~kr~LlVlDdv~~ 271 (922)
...+..+.+++ +++.+|+++||+-.
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 11122345555 57999999999854
No 342
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.044 Score=56.42 Aligned_cols=81 Identities=21% Similarity=0.246 Sum_probs=49.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcc--CCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHH
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQER--HDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFK 255 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 255 (922)
-|+|-++|++|.|||+|.+++++.. .++ +.+....-+.+.. ..++...... ...-...+.++|.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL-SIR~~~~y~~~~liEins----hsLFSKWFsE--------SgKlV~kmF~kI~E 243 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL-SIRTNDRYYKGQLIEINS----HSLFSKWFSE--------SGKLVAKMFQKIQE 243 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh-eeeecCccccceEEEEeh----hHHHHHHHhh--------hhhHHHHHHHHHHH
Confidence 4789999999999999999999998 433 2333333333221 1222222211 12334555666777
Q ss_pred HhcCCc--EEEEEccCCC
Q 042817 256 ILSNKK--FVLLLDDMWE 271 (922)
Q Consensus 256 ~l~~kr--~LlVlDdv~~ 271 (922)
.++++. +++.+|.|..
T Consensus 244 Lv~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 244 LVEDRGNLVFVLIDEVES 261 (423)
T ss_pred HHhCCCcEEEEEeHHHHH
Confidence 776654 4667899865
No 343
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.00 E-value=0.041 Score=54.06 Aligned_cols=120 Identities=19% Similarity=0.239 Sum_probs=64.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEE---eCCCCCHHHHHH------HHHhhccCCcc---cccCC
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVV---VSKDLNLEKVQE------DIGKKIDMFSE---SWKNK 244 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~---~s~~~~~~~~~~------~i~~~l~~~~~---~~~~~ 244 (922)
.-.+++|+|..|.|||||++.++... ....+.+++. +.. .+...... ++++.++.... .....
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~----~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL----KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 34699999999999999999998765 2334445443 221 12222211 23444443211 01111
Q ss_pred Ch-hhhHHHHHHHhcCCcEEEEEccCCCccc---cccccccCCCC-CC-CcEEEEEcCChhhh
Q 042817 245 SP-VEKSCAIFKILSNKKFVLLLDDMWEPVD---LTKVGVPIPNS-TN-ASKVVFTTRYKEVC 301 (922)
Q Consensus 245 ~~-~~~~~~l~~~l~~kr~LlVlDdv~~~~~---~~~l~~~~~~~-~~-gs~IivTtR~~~v~ 301 (922)
+. +...-.+.+.+-..+-++++|+.-..-+ .+.+...+... .. |..||++|.+.+..
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 21 2222345566677888999999865322 12222222111 12 56788888876654
No 344
>PRK03839 putative kinase; Provisional
Probab=95.00 E-value=0.021 Score=56.24 Aligned_cols=23 Identities=57% Similarity=0.767 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.|.|+|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999987
No 345
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.99 E-value=0.12 Score=58.58 Aligned_cols=83 Identities=19% Similarity=0.331 Sum_probs=47.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccc---cCCChhhhHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESW---KNKSPVEKSCAI 253 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 253 (922)
.-.++.|.|.+|+|||||+.+++.... ..-..++|++... +..++... ++.++...+.. ...+.+ .+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ee--s~~qi~~r-a~rlg~~~~~l~~~~e~~l~----~i 148 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGEE--SASQIKLR-AERLGLPSDNLYLLAETNLE----AI 148 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEccc--cHHHHHHH-HHHcCCChhcEEEeCCCCHH----HH
Confidence 346999999999999999999988762 1223578887544 33444322 44454322111 111222 23
Q ss_pred HHHhc-CCcEEEEEccC
Q 042817 254 FKILS-NKKFVLLLDDM 269 (922)
Q Consensus 254 ~~~l~-~kr~LlVlDdv 269 (922)
.+.++ .+.-++|+|.+
T Consensus 149 ~~~i~~~~~~lVVIDSI 165 (446)
T PRK11823 149 LATIEEEKPDLVVIDSI 165 (446)
T ss_pred HHHHHhhCCCEEEEech
Confidence 33332 35557888876
No 346
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.99 E-value=0.061 Score=52.35 Aligned_cols=123 Identities=20% Similarity=0.215 Sum_probs=63.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCC--CCHHHHHHHHHhhccCCccc--ccC-------CC
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKD--LNLEKVQEDIGKKIDMFSES--WKN-------KS 245 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~--~~~-------~~ 245 (922)
.-.+++|+|+.|.|||||++.++... ....+.+++.-... ...... ...++..... ... .+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~----~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS 98 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY----DPTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILS 98 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC----CCCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhC
Confidence 34689999999999999999998875 12334444421110 111111 1111110000 000 01
Q ss_pred -hhhhHHHHHHHhcCCcEEEEEccCCCccc------cccccccCCCCCCCcEEEEEcCChhhhccccccceeec
Q 042817 246 -PVEKSCAIFKILSNKKFVLLLDDMWEPVD------LTKVGVPIPNSTNASKVVFTTRYKEVCGKMEAHKKLRV 312 (922)
Q Consensus 246 -~~~~~~~l~~~l~~kr~LlVlDdv~~~~~------~~~l~~~~~~~~~gs~IivTtR~~~v~~~~~~~~~~~l 312 (922)
.+...-.+...+-.++-+++||+....-| +.++...+. .+..||++|.+.+.... .++.+.+
T Consensus 99 ~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 99 GGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA---KGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc---CCCEEEEEecCHHHHHh--CCEEEEE
Confidence 11111234555667788999999865422 222222222 24668888888776643 3444443
No 347
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.97 E-value=0.11 Score=56.13 Aligned_cols=58 Identities=16% Similarity=0.223 Sum_probs=41.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhc---cCCCceEEEEEeCCCCCHHHHHHHHHhhcc
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQE---RHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (922)
.-.++-|+|.+|+||||++.+++...... ...-..++||+....++...+.+ +++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 35788999999999999999987765110 00113799999988888777543 444443
No 348
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.11 Score=55.72 Aligned_cols=96 Identities=19% Similarity=0.241 Sum_probs=56.8
Q ss_pred HHHHHHhccC--CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCC
Q 042817 167 DDAWRCMIEE--QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNK 244 (922)
Q Consensus 167 ~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~ 244 (922)
.++-..|..+ .-.+|.|-|-+|||||||..+++.+.. ..- .+++|+-.+. ..++ +--++.++.+.+...-.
T Consensus 80 ~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA---~~~-~vLYVsGEES--~~Qi-klRA~RL~~~~~~l~l~ 152 (456)
T COG1066 80 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA---KRG-KVLYVSGEES--LQQI-KLRADRLGLPTNNLYLL 152 (456)
T ss_pred HHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHH---hcC-cEEEEeCCcC--HHHH-HHHHHHhCCCccceEEe
Confidence 3344445432 336899999999999999999999982 222 6777764443 3332 33355566544322111
Q ss_pred ChhhhHHHHHHHh-cCCcEEEEEccCC
Q 042817 245 SPVEKSCAIFKIL-SNKKFVLLLDDMW 270 (922)
Q Consensus 245 ~~~~~~~~l~~~l-~~kr~LlVlDdv~ 270 (922)
.+..+ +.|.+.+ +.++-++|+|-+.
T Consensus 153 aEt~~-e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 153 AETNL-EDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred hhcCH-HHHHHHHHhcCCCEEEEeccc
Confidence 22222 2333434 4688899999873
No 349
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.93 E-value=0.019 Score=50.77 Aligned_cols=22 Identities=50% Similarity=0.850 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 042817 181 IGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 181 i~I~G~gGiGKTtLa~~v~~~~ 202 (922)
|.|+|.+|+|||++|+.++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999998887
No 350
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.93 E-value=0.018 Score=51.62 Aligned_cols=28 Identities=46% Similarity=0.554 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhccCCCce
Q 042817 181 IGLYGAGGVGKTTLLKQLNNKLCQERHDFDI 211 (922)
Q Consensus 181 i~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~ 211 (922)
|-|.|.+|+||||+|++++... ...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCceeE
Confidence 5689999999999999999987 566753
No 351
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.93 E-value=0.023 Score=56.40 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=23.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
++++|.|+|++|+||||+|+.++...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998775
No 352
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.91 E-value=0.098 Score=52.08 Aligned_cols=41 Identities=29% Similarity=0.433 Sum_probs=29.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCC--------ceEEEEEeCCC
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKLCQERHDF--------DIVIWVVVSKD 220 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F--------~~~~wv~~s~~ 220 (922)
.++.|+|++|+||||++..+..... ....| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~-~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALA-TGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHH-T---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH-hCCccCCcccccCceEEEEeccCC
Confidence 4889999999999999999988873 22222 36788876665
No 353
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.89 E-value=0.059 Score=58.82 Aligned_cols=78 Identities=21% Similarity=0.205 Sum_probs=49.4
Q ss_pred CcccchhhHHHHHHHHhcc---------C-----CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEe-CCCC
Q 042817 157 PRIIGQESIFDDAWRCMIE---------E-----QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVV-SKDL 221 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~---------~-----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~-s~~~ 221 (922)
..++|.+..++.+..++.. . ..+-|.++|++|+|||++|+.++......--+++..-|... -...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 4689999998888777643 0 13578999999999999999999887211112233322221 1223
Q ss_pred CHHHHHHHHHhhc
Q 042817 222 NLEKVQEDIGKKI 234 (922)
Q Consensus 222 ~~~~~~~~i~~~l 234 (922)
+...+.+.+....
T Consensus 95 d~e~~ir~L~~~A 107 (443)
T PRK05201 95 DVESIIRDLVEIA 107 (443)
T ss_pred CHHHHHHHHHHHH
Confidence 5556666665443
No 354
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.88 E-value=0.9 Score=48.23 Aligned_cols=168 Identities=13% Similarity=0.067 Sum_probs=91.7
Q ss_pred HHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhh-------ccCCCceEEEEEe-CCCCCHHHHHHHHHhhccC
Q 042817 166 FDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQ-------ERHDFDIVIWVVV-SKDLNLEKVQEDIGKKIDM 236 (922)
Q Consensus 166 ~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~-------~~~~F~~~~wv~~-s~~~~~~~~~~~i~~~l~~ 236 (922)
++.+...+..+.. ++.-++|..|.||+++|+.+.+..-. ...+-+...+++. .....+.++. ++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 3445555555444 46669999999999999999887511 0111112233322 1222233332 22232221
Q ss_pred CcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCccc--cccccccCCCCCCCcEEEEEcC-Chhhhcc-ccccceeec
Q 042817 237 FSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPVD--LTKVGVPIPNSTNASKVVFTTR-YKEVCGK-MEAHKKLRV 312 (922)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~gs~IivTtR-~~~v~~~-~~~~~~~~l 312 (922)
.. .-.+.+-++|+||++.... ...+...+..-..++.+|++|. ...+... .+....+++
T Consensus 84 ~~-----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f 146 (299)
T PRK07132 84 SS-----------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNV 146 (299)
T ss_pred CC-----------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEEC
Confidence 10 0014677899999866432 3344444433345666665554 3444433 234568899
Q ss_pred CCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHH
Q 042817 313 ECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITI 360 (922)
Q Consensus 313 ~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 360 (922)
.++++++..+.+... + . .++.+..++...+|.--|+..+
T Consensus 147 ~~l~~~~l~~~l~~~-~-~-------~~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 147 KEPDQQKILAKLLSK-N-K-------EKEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred CCCCHHHHHHHHHHc-C-C-------ChhHHHHHHHHcCCHHHHHHHH
Confidence 999999998877653 1 1 1234666666677643555543
No 355
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.95 Score=49.49 Aligned_cols=148 Identities=18% Similarity=0.196 Sum_probs=79.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHHhc
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILS 258 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 258 (922)
|=--++|+||.|||++..++++.. .||. +=+..+...+-. .+++.|.
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L-----~ydI-ydLeLt~v~~n~---------------------------dLr~LL~ 282 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL-----NYDI-YDLELTEVKLDS---------------------------DLRHLLL 282 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc-----CCce-EEeeeccccCcH---------------------------HHHHHHH
Confidence 446689999999999999999987 3442 112222111111 1333332
Q ss_pred --CCcEEEEEccCCCcccc-----------c---------cccccCC--CCCC-CcEEE-EEcCChhhhcc--c---ccc
Q 042817 259 --NKKFVLLLDDMWEPVDL-----------T---------KVGVPIP--NSTN-ASKVV-FTTRYKEVCGK--M---EAH 307 (922)
Q Consensus 259 --~kr~LlVlDdv~~~~~~-----------~---------~l~~~~~--~~~~-gs~Ii-vTtR~~~v~~~--~---~~~ 307 (922)
..+-.||+.|++-..++ + .+...+. +... +=||| .||...+-..- + ..+
T Consensus 283 ~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmD 362 (457)
T KOG0743|consen 283 ATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMD 362 (457)
T ss_pred hCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcce
Confidence 24556666666542111 0 0111110 1111 23555 56665544221 1 223
Q ss_pred ceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHHHhhhc
Q 042817 308 KKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITIGRAMS 365 (922)
Q Consensus 308 ~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~ 365 (922)
-.+.|.--+.+....||....+.+. . ..++.+|.+.-.|.-+.=..++..|-
T Consensus 363 mhI~mgyCtf~~fK~La~nYL~~~~--~----h~L~~eie~l~~~~~~tPA~V~e~lm 414 (457)
T KOG0743|consen 363 MHIYMGYCTFEAFKTLASNYLGIEE--D----HRLFDEIERLIEETEVTPAQVAEELM 414 (457)
T ss_pred eEEEcCCCCHHHHHHHHHHhcCCCC--C----cchhHHHHHHhhcCccCHHHHHHHHh
Confidence 4678899999999999988876543 1 24566666655666555455544443
No 356
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.87 E-value=0.13 Score=55.58 Aligned_cols=59 Identities=15% Similarity=0.215 Sum_probs=42.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhh---ccCCCceEEEEEeCCCCCHHHHHHHHHhhccC
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQ---ERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDM 236 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 236 (922)
...++-|+|.+|+|||++|..++-.... ....-..++|++....+..+.+. +|++.++.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence 3568889999999999999887754311 01112379999999998888764 55666554
No 357
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.86 E-value=0.022 Score=54.70 Aligned_cols=24 Identities=46% Similarity=0.576 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+.|-+.|.+|+||||+|++++...
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 467889999999999999999987
No 358
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.86 E-value=0.13 Score=51.72 Aligned_cols=97 Identities=22% Similarity=0.427 Sum_probs=56.6
Q ss_pred HHHHhcc-CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCC-CCHHHHHHHHHhhccCCcc----ccc
Q 042817 169 AWRCMIE-EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKD-LNLEKVQEDIGKKIDMFSE----SWK 242 (922)
Q Consensus 169 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~----~~~ 242 (922)
.++.|.. ..-.-++|.|.+|+|||+|+..+.+.. .-+.++++-+.+. ..+.++.+++...-..... ...
T Consensus 5 ~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~ 79 (215)
T PF00006_consen 5 AIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATS 79 (215)
T ss_dssp HHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEET
T ss_pred eeccccccccCCEEEEEcCcccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhcccccccccccccc
Confidence 3444432 223578999999999999999999986 2344577777654 4566666666443111000 001
Q ss_pred CCChhh------hHHHHHHHh--cCCcEEEEEccCC
Q 042817 243 NKSPVE------KSCAIFKIL--SNKKFVLLLDDMW 270 (922)
Q Consensus 243 ~~~~~~------~~~~l~~~l--~~kr~LlVlDdv~ 270 (922)
...... ..-.+.+++ +++.+|+++||+-
T Consensus 80 ~~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 80 DEPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETHH
T ss_pred hhhHHHHhhhhccchhhhHHHhhcCCceeehhhhhH
Confidence 111111 112233333 6899999999983
No 359
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.85 E-value=0.094 Score=50.71 Aligned_cols=124 Identities=14% Similarity=0.156 Sum_probs=62.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCC--Cc---eEEEEEeCCCCCH--HHHHHHHHhhccCCcccccCCC-hhh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHD--FD---IVIWVVVSKDLNL--EKVQEDIGKKIDMFSESWKNKS-PVE 248 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--F~---~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~~~~~~~-~~~ 248 (922)
.-.+++|+|..|.|||||++.+........+. ++ .+.++ .+.... ..+.+.+.-. .. ..-+ -+.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~---~~LS~G~~ 97 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WD---DVLSGGEQ 97 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc---CC---CCCCHHHH
Confidence 34689999999999999999998875211111 11 12222 222211 1222222210 10 1111 222
Q ss_pred hHHHHHHHhcCCcEEEEEccCCCccc---cccccccCCCCCCCcEEEEEcCChhhhccccccceeec
Q 042817 249 KSCAIFKILSNKKFVLLLDDMWEPVD---LTKVGVPIPNSTNASKVVFTTRYKEVCGKMEAHKKLRV 312 (922)
Q Consensus 249 ~~~~l~~~l~~kr~LlVlDdv~~~~~---~~~l~~~~~~~~~gs~IivTtR~~~v~~~~~~~~~~~l 312 (922)
..-.+.+.+-.++=++++|+.-..-| ...+...+... +..||++|.+..... ..++.+.+
T Consensus 98 ~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~--~~d~i~~l 160 (166)
T cd03223 98 QRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK--FHDRVLDL 160 (166)
T ss_pred HHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh--hCCEEEEE
Confidence 23345556667778889998755322 11221222111 355888888776543 23444443
No 360
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.83 E-value=0.16 Score=55.92 Aligned_cols=89 Identities=17% Similarity=0.120 Sum_probs=51.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcc-CCCceEEEEEeCCCC-CHHHHHHHHHhhccCCcccccCCChhhhHHHHHH
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQER-HDFDIVIWVVVSKDL-NLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFK 255 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 255 (922)
.++|.++|+.|+||||.+..++....... ..-..+..+++.... ....-++..++.++.+-. ...+.......+.+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~L~~ 251 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEEITQ 251 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHHHHH
Confidence 46999999999999999999988762111 122345555544321 122335666666665432 22233444333333
Q ss_pred HhcCCcEEEEEccCC
Q 042817 256 ILSNKKFVLLLDDMW 270 (922)
Q Consensus 256 ~l~~kr~LlVlDdv~ 270 (922)
+ .+.-++++|...
T Consensus 252 -~-~~~DlVLIDTaG 264 (388)
T PRK12723 252 -S-KDFDLVLVDTIG 264 (388)
T ss_pred -h-CCCCEEEEcCCC
Confidence 2 345688889874
No 361
>PRK00625 shikimate kinase; Provisional
Probab=94.80 E-value=0.026 Score=54.66 Aligned_cols=23 Identities=43% Similarity=0.379 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.|.++||+|+||||+++.+++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999886
No 362
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.77 E-value=0.068 Score=59.28 Aligned_cols=90 Identities=22% Similarity=0.269 Sum_probs=51.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhc-----cCCcccccCCC-----h
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKI-----DMFSESWKNKS-----P 246 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l-----~~~~~~~~~~~-----~ 246 (922)
.-..++|+|..|+|||||++.+.... .....++++.-.+..++.++....+... ...... +... .
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qs-d~~~~~r~~~ 238 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATS-DESPMMRRLA 238 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcC-CCCHHHHHHH
Confidence 33589999999999999999887654 2233555554445556655544333322 111100 1111 1
Q ss_pred hhhHHHHHHHh--cCCcEEEEEccCCC
Q 042817 247 VEKSCAIFKIL--SNKKFVLLLDDMWE 271 (922)
Q Consensus 247 ~~~~~~l~~~l--~~kr~LlVlDdv~~ 271 (922)
......+.+++ +++.+|+++||+-.
T Consensus 239 ~~~a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 239 PLTATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchHH
Confidence 11122344554 47999999999854
No 363
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.75 E-value=0.058 Score=50.75 Aligned_cols=104 Identities=23% Similarity=0.289 Sum_probs=56.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKI 256 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 256 (922)
.-.+++|+|..|.|||||++.+.... ....+.+++.-. ..+.... +-...+...-.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~~~-------------~~i~~~~---~lS~G~~~rv~lara 84 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL----EPDEGIVTWGST-------------VKIGYFE---QLSGGEKMRLALAKL 84 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC----CCCceEEEECCe-------------EEEEEEc---cCCHHHHHHHHHHHH
Confidence 33689999999999999999998765 123444444310 0011000 001111222234555
Q ss_pred hcCCcEEEEEccCCCccc---cccccccCCCCCCCcEEEEEcCChhhhc
Q 042817 257 LSNKKFVLLLDDMWEPVD---LTKVGVPIPNSTNASKVVFTTRYKEVCG 302 (922)
Q Consensus 257 l~~kr~LlVlDdv~~~~~---~~~l~~~~~~~~~gs~IivTtR~~~v~~ 302 (922)
+-.++-++++|+.-..-| ...+...+... +..||++|.+.+.+.
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 666777899999865322 12222222111 235888888766543
No 364
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.74 E-value=0.056 Score=63.27 Aligned_cols=74 Identities=15% Similarity=0.199 Sum_probs=56.7
Q ss_pred CcccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhcc
Q 042817 157 PRIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (922)
..++|.++.++.+...+... +.+.++|.+|+||||+|+.+.+.. ....++..+|..-+ ..+...+++.++.+++
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l--~~~~~~~~~~~~np-~~~~~~~~~~v~~~~G 104 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELL--PKEELQDILVYPNP-EDPNNPKIRTVPAGKG 104 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHc--ChHhHHHheEeeCC-CcchHHHHHHHHHhcC
Confidence 46899999988888777654 478899999999999999999876 23456788887663 3366777777776554
No 365
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.71 E-value=0.12 Score=51.24 Aligned_cols=45 Identities=24% Similarity=0.211 Sum_probs=30.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHH
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQED 229 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 229 (922)
++.|.|.+|+|||++|.++..... + .=..++|++... +..++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~--~-~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL--A-RGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH--H-CCCcEEEEECCC--CHHHHHHH
Confidence 367899999999999998877762 1 224577887654 34444443
No 366
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.67 E-value=0.07 Score=49.65 Aligned_cols=23 Identities=52% Similarity=0.790 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999875
No 367
>PRK04040 adenylate kinase; Provisional
Probab=94.66 E-value=0.03 Score=55.17 Aligned_cols=24 Identities=42% Similarity=0.606 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+|+|+|++|+||||+++.+....
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999887
No 368
>PRK05439 pantothenate kinase; Provisional
Probab=94.65 E-value=0.22 Score=52.81 Aligned_cols=27 Identities=37% Similarity=0.432 Sum_probs=23.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 176 EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 176 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...-+|+|.|.+|+||||+|+.+....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 355699999999999999999998866
No 369
>PRK06217 hypothetical protein; Validated
Probab=94.64 E-value=0.049 Score=53.70 Aligned_cols=23 Identities=43% Similarity=0.553 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.|.|.|.+|.||||+|+++....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999886
No 370
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.61 E-value=0.16 Score=52.43 Aligned_cols=95 Identities=12% Similarity=0.166 Sum_probs=57.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhh-ccCCCceEEEEEeCCCC-CHHHHHHHHHhhccCCcc-----cccCCC----
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQ-ERHDFDIVIWVVVSKDL-NLEKVQEDIGKKIDMFSE-----SWKNKS---- 245 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~---- 245 (922)
.-..++|.|-.|+|||+|+..+.++... .+..-+.++++-+.+.. ...++.+.+.+.=..... ..+...
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 3457899999999999999998887510 12335678888876654 466666666553211110 001111
Q ss_pred -hhhhHHHHHHHhc---CCcEEEEEccCCC
Q 042817 246 -PVEKSCAIFKILS---NKKFVLLLDDMWE 271 (922)
Q Consensus 246 -~~~~~~~l~~~l~---~kr~LlVlDdv~~ 271 (922)
.......+.++++ ++++|+++||+-.
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 1111234555553 6899999999854
No 371
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.60 E-value=0.075 Score=54.37 Aligned_cols=100 Identities=10% Similarity=0.084 Sum_probs=56.6
Q ss_pred cccchhhHHHHHHHHhc----cC---CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHH
Q 042817 158 RIIGQESIFDDAWRCMI----EE---QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDI 230 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~----~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 230 (922)
.++|..-..+.|+..+. ++ +.-+++.+|+.|.||.-+|+.++++.-+..-+-+ .....
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~---------------~V~~f 147 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSP---------------FVHHF 147 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccch---------------hHHHh
Confidence 45676655666665554 32 4559999999999999999999998722111111 11222
Q ss_pred HhhccCCcccccCCChhhhHHHHHHHhc-CCcEEEEEccCCCc
Q 042817 231 GKKIDMFSESWKNKSPVEKSCAIFKILS-NKKFVLLLDDMWEP 272 (922)
Q Consensus 231 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~ 272 (922)
.....-+..+....-.+++...++..++ -+|-|+|+|+|+..
T Consensus 148 vat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 148 VATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred hhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 2222222211111112233334444343 48999999999874
No 372
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.60 E-value=0.063 Score=52.35 Aligned_cols=117 Identities=22% Similarity=0.270 Sum_probs=61.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCccc---ccC--------CC
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSES---WKN--------KS 245 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~--------~~ 245 (922)
.-.+++|+|..|.|||||++.++... ....+.+++.-....+.. ..+...++..... ... .+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS 97 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL----KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLS 97 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcC
Confidence 34689999999999999999998765 223455554321111110 1111112110000 011 11
Q ss_pred h-hhhHHHHHHHhcCCcEEEEEccCCCcccc------ccccccCCCCCCCcEEEEEcCChhhhc
Q 042817 246 P-VEKSCAIFKILSNKKFVLLLDDMWEPVDL------TKVGVPIPNSTNASKVVFTTRYKEVCG 302 (922)
Q Consensus 246 ~-~~~~~~l~~~l~~kr~LlVlDdv~~~~~~------~~l~~~~~~~~~gs~IivTtR~~~v~~ 302 (922)
. +...-.+...+..++=++++|+.-..-|. .++...+.. .|..||++|.+.....
T Consensus 98 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~--~g~tiii~th~~~~~~ 159 (173)
T cd03230 98 GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKK--EGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH--CCCEEEEECCCHHHHH
Confidence 1 11222455666778889999998654321 222222222 3567888888876544
No 373
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.58 E-value=0.13 Score=56.45 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..++.++|++|+||||+|..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998764
No 374
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.58 E-value=0.015 Score=34.57 Aligned_cols=22 Identities=41% Similarity=0.665 Sum_probs=15.4
Q ss_pred CceEEEccCCCCCcccCccccCc
Q 042817 563 SLKVLNLSNNFSLREFPPGISKL 585 (922)
Q Consensus 563 ~L~~L~L~~~~~l~~lp~~i~~L 585 (922)
+|++|||++| .++.+|+++++|
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT-
T ss_pred CccEEECCCC-cCEeCChhhcCC
Confidence 4778888888 777777766543
No 375
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.24 Score=56.72 Aligned_cols=170 Identities=15% Similarity=0.182 Sum_probs=86.6
Q ss_pred cccchhhHHH---HHHHHhccCC---------eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHH
Q 042817 158 RIIGQESIFD---DAWRCMIEEQ---------VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEK 225 (922)
Q Consensus 158 ~~vGr~~~~~---~l~~~L~~~~---------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~ 225 (922)
++.|.|+.++ ++++.|.++. .+=+..+|++|.|||.||++++... .-.| .+.|.. +..+
T Consensus 151 DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA---~VPF-----f~iSGS-~FVe 221 (596)
T COG0465 151 DVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPF-----FSISGS-DFVE 221 (596)
T ss_pred hhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc---CCCc-----eeccch-hhhh
Confidence 5678776554 5566666531 2457899999999999999999987 2233 112211 0000
Q ss_pred HHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCc----------------cccccccccCCCCC--C
Q 042817 226 VQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEP----------------VDLTKVGVPIPNST--N 287 (922)
Q Consensus 226 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~----------------~~~~~l~~~~~~~~--~ 287 (922)
..- ........+...+..++-++.+++|.++.. ..+.++......++ .
T Consensus 222 -------mfV-------GvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~ 287 (596)
T COG0465 222 -------MFV-------GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNE 287 (596)
T ss_pred -------hhc-------CCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCC
Confidence 000 001111112333344566899999988642 11223322222333 2
Q ss_pred CcEEEEEcCChhhhccc-----cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCch
Q 042817 288 ASKVVFTTRYKEVCGKM-----EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLP 354 (922)
Q Consensus 288 gs~IivTtR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 354 (922)
|-.||..|-..+|.... .-+..+.++..+-..-.+.++.++........-++.. |++.+-|.-
T Consensus 288 gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~----iAr~tpGfs 355 (596)
T COG0465 288 GVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKK----IARGTPGFS 355 (596)
T ss_pred ceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHH----HhhhCCCcc
Confidence 33444455556664221 1234555555555556666665554433222223222 666666654
No 376
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.092 Score=51.80 Aligned_cols=60 Identities=15% Similarity=0.246 Sum_probs=40.9
Q ss_pred HHHHHHHhcCCcEEEEEccCCCccccccccc------cCCCCCCCcEEEEEcCChhhhccccccceee
Q 042817 250 SCAIFKILSNKKFVLLLDDMWEPVDLTKVGV------PIPNSTNASKVVFTTRYKEVCGKMEAHKKLR 311 (922)
Q Consensus 250 ~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~------~~~~~~~gs~IivTtR~~~v~~~~~~~~~~~ 311 (922)
...|.+.+--++-|.|||..++--|.+.+.. .+. .+|+-+++.|..+.++.....+.++-
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~~~~liITHy~rll~~i~pD~vhv 217 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR--EEGRGVLIITHYQRLLDYIKPDKVHV 217 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHhhcCCCEEEE
Confidence 3456677777888999999988665554421 122 34666888888888988776655543
No 377
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.56 E-value=0.15 Score=50.43 Aligned_cols=166 Identities=17% Similarity=0.245 Sum_probs=88.8
Q ss_pred cccc-hhhHHHHHHHHhcc-------------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCH
Q 042817 158 RIIG-QESIFDDAWRCMIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNL 223 (922)
Q Consensus 158 ~~vG-r~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 223 (922)
.+|| .+..+.+|.+.+.- .+.+-+-++|++|.|||-||++|+++. . .-|+.||..
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht---~-----c~firvsgs--- 215 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT---D-----CTFIRVSGS--- 215 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc---c-----eEEEEechH---
Confidence 3555 46666666655431 245567899999999999999999986 2 234555543
Q ss_pred HHHHHHHHhhccCCcccccCCChhhhHHHHHHHh-cCCcEEEEEccCCCcc----------c------cccccccCC--C
Q 042817 224 EKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKIL-SNKKFVLLLDDMWEPV----------D------LTKVGVPIP--N 284 (922)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~----------~------~~~l~~~~~--~ 284 (922)
+-+++-|.+. ......+.-.- ..-+-.|+.|.+++.. + ..++...+. .
T Consensus 216 elvqk~igeg-------------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfe 282 (404)
T KOG0728|consen 216 ELVQKYIGEG-------------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFE 282 (404)
T ss_pred HHHHHHhhhh-------------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccc
Confidence 2222222110 01111111111 2356678888876520 0 011111221 1
Q ss_pred CCCCcEEEEEcCChhhhccc-----cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHH
Q 042817 285 STNASKVVFTTRYKEVCGKM-----EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVA 347 (922)
Q Consensus 285 ~~~gs~IivTtR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~ 347 (922)
..+.-+||..|..-++.... ..+..++.++-+++.-.++++-+....+.....++..+|+++.
T Consensus 283 atknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~ 350 (404)
T KOG0728|consen 283 ATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMP 350 (404)
T ss_pred cccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCC
Confidence 24566888888776664321 2355678888777766777765543333222344555555443
No 378
>PRK05922 type III secretion system ATPase; Validated
Probab=94.56 E-value=0.1 Score=57.87 Aligned_cols=90 Identities=12% Similarity=0.224 Sum_probs=51.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCC-CCCHHHHHHHHHhhccCCcccc--cCCC--h-----
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSK-DLNLEKVQEDIGKKIDMFSESW--KNKS--P----- 246 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~--~~~~--~----- 246 (922)
.-..++|+|..|+|||||++.+.+.. . .+..+++-+.. ...+.+.+.+..........-. ...+ .
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~----~-~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGS----K-STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC----C-CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence 44579999999999999999998764 1 23333333333 3344455555544332211000 0111 1
Q ss_pred -hhhHHHHHHHh--cCCcEEEEEccCCC
Q 042817 247 -VEKSCAIFKIL--SNKKFVLLLDDMWE 271 (922)
Q Consensus 247 -~~~~~~l~~~l--~~kr~LlVlDdv~~ 271 (922)
...+..+.+++ +++++|+++||+-.
T Consensus 231 a~~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 231 AGRAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 11223455555 57999999999954
No 379
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.55 E-value=0.062 Score=49.11 Aligned_cols=26 Identities=38% Similarity=0.399 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.-.+|.+.|.-|.||||+++.++...
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 33589999999999999999999986
No 380
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.55 E-value=0.17 Score=57.19 Aligned_cols=40 Identities=30% Similarity=0.380 Sum_probs=30.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCC
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSK 219 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 219 (922)
.-.++.|.|.+|+|||||+.+++..... . -..++|++...
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~-~--g~kvlYvs~EE 132 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAK-N--QMKVLYVSGEE 132 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHh-c--CCcEEEEECcC
Confidence 4469999999999999999999777621 1 13577887543
No 381
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.55 E-value=0.11 Score=55.76 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 042817 181 IGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 181 i~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+++.|++|.||||+++.+.+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999887
No 382
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.54 E-value=0.094 Score=54.79 Aligned_cols=40 Identities=20% Similarity=0.356 Sum_probs=30.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCC
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSK 219 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 219 (922)
.-+++.|.|.+|+|||++|.+++.... ..=..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a---~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA---SRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEecC
Confidence 346899999999999999998866641 1234678888764
No 383
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.54 E-value=0.13 Score=57.57 Aligned_cols=93 Identities=20% Similarity=0.375 Sum_probs=58.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCC-CCHHHHHHHHHhhccCCccc--c--cCCCh-----
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKD-LNLEKVQEDIGKKIDMFSES--W--KNKSP----- 246 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~--~--~~~~~----- 246 (922)
.-..++|.|.+|+|||||+.++.+... +.+-+.++++-+... ..+.++...+...-...... . .+...
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~--~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS--KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 346899999999999999999988872 235677777776544 34566666665432211100 0 01111
Q ss_pred -hhhHHHHHHHh---cCCcEEEEEccCCC
Q 042817 247 -VEKSCAIFKIL---SNKKFVLLLDDMWE 271 (922)
Q Consensus 247 -~~~~~~l~~~l---~~kr~LlVlDdv~~ 271 (922)
...+..+.+++ +++.+|+++|++-.
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 12233455666 37999999999944
No 384
>PRK04328 hypothetical protein; Provisional
Probab=94.52 E-value=0.12 Score=53.75 Aligned_cols=41 Identities=17% Similarity=0.202 Sum_probs=30.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCC
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKD 220 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~ 220 (922)
.-.++.|.|.+|.|||+||.++.... ...-...+|++....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~---~~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEEeeCC
Confidence 45799999999999999998876654 122356788887653
No 385
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.50 E-value=0.023 Score=55.04 Aligned_cols=42 Identities=31% Similarity=0.245 Sum_probs=33.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcc-CCCceEEEEEeCCCCC
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQER-HDFDIVIWVVVSKDLN 222 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~~~wv~~s~~~~ 222 (922)
..++-+.|+.|+|||.+|+++++.. . +.....+-++.+.-..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l---~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELL---FVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHH---T-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHh---ccCCccchHHHhhhcccc
Confidence 4578899999999999999999998 4 4556677777665544
No 386
>PTZ00035 Rad51 protein; Provisional
Probab=94.48 E-value=0.35 Score=52.47 Aligned_cols=57 Identities=21% Similarity=0.250 Sum_probs=39.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhc----cCCCceEEEEEeCCCCCHHHHHHHHHhhcc
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQE----RHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (922)
.-.++.|+|.+|.|||||+..++-.. .. ...-..++|++....++.+.+ .++++..+
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~-qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g 177 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTC-QLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFG 177 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHh-ccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhC
Confidence 45799999999999999998887554 21 112236779998887777764 34455544
No 387
>PRK05973 replicative DNA helicase; Provisional
Probab=94.47 E-value=0.21 Score=50.85 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=33.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDI 230 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 230 (922)
.-.++.|.|.+|+|||++|.++..... +. -..+++++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a--~~-Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM--KS-GRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH--hc-CCeEEEEEEeCC--HHHHHHHH
Confidence 346899999999999999998877652 22 245677765554 44554443
No 388
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.46 E-value=0.048 Score=52.54 Aligned_cols=115 Identities=18% Similarity=0.175 Sum_probs=61.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCC--CCHHHHHHHHHhhccCCcccccCCChhhhHHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKD--LNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIF 254 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 254 (922)
.-.+++|+|..|.|||||.+.++... ....+.+++.-..- .+..+. ..+.++... +-...+...-.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~---qLS~G~~qrl~la 94 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDA---RRAGIAMVY---QLSVGERQMVEIA 94 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHH---HhcCeEEEE---ecCHHHHHHHHHH
Confidence 33589999999999999999998765 23445555532111 111111 111122110 1111122223455
Q ss_pred HHhcCCcEEEEEccCCCccc---cccccccCCC-CCCCcEEEEEcCChhhh
Q 042817 255 KILSNKKFVLLLDDMWEPVD---LTKVGVPIPN-STNASKVVFTTRYKEVC 301 (922)
Q Consensus 255 ~~l~~kr~LlVlDdv~~~~~---~~~l~~~~~~-~~~gs~IivTtR~~~v~ 301 (922)
+.+-.++-++++|+.-..-| ...+...+.. ...|..||++|.+...+
T Consensus 95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 56667788899999865422 1122111111 12356688888887643
No 389
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.43 E-value=0.14 Score=49.77 Aligned_cols=118 Identities=19% Similarity=0.198 Sum_probs=63.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCC---CCCHHHHHHHHH--hhccCCcc-cccCCCh-----
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSK---DLNLEKVQEDIG--KKIDMFSE-SWKNKSP----- 246 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~---~~~~~~~~~~i~--~~l~~~~~-~~~~~~~----- 246 (922)
...|-|+|..|-||||.|..++-+.. ...+ .+..+-.-. ...-...++.+- ........ .+...+.
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~--g~G~-~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAV--GHGK-KVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHH--HCCC-eEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHH
Confidence 46889999999999999988887762 2233 233333222 233344444321 10000000 1111111
Q ss_pred --hhhHHHHHHHhcCCcE-EEEEccCCCc-----cccccccccCCCCCCCcEEEEEcCCh
Q 042817 247 --VEKSCAIFKILSNKKF-VLLLDDMWEP-----VDLTKVGVPIPNSTNASKVVFTTRYK 298 (922)
Q Consensus 247 --~~~~~~l~~~l~~kr~-LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~IivTtR~~ 298 (922)
.+.....++.+...+| |+|||.+-.. .+.+++...+.....+..||+|-|+.
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1122344555555444 9999998543 33444444454455677899999976
No 390
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.39 E-value=0.029 Score=55.33 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+|.|+|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999876
No 391
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.37 E-value=0.22 Score=49.40 Aligned_cols=46 Identities=26% Similarity=0.359 Sum_probs=35.8
Q ss_pred CcccchhhHHHHHHHHh----ccCCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 157 PRIIGQESIFDDAWRCM----IEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..++|.|...+.+++-- ......-|-+||.-|+|||.|++++.+..
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH
Confidence 36789888877776543 23344567799999999999999999998
No 392
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.36 E-value=0.029 Score=56.19 Aligned_cols=23 Identities=43% Similarity=0.768 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+|+|.|++|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998875
No 393
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.34 E-value=0.13 Score=61.21 Aligned_cols=86 Identities=16% Similarity=0.199 Sum_probs=56.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCccc---ccCCChhhhHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSES---WKNKSPVEKSCAI 253 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 253 (922)
.-+++-|+|.+|+||||||.+++... . ..-..++|++....++. ..+++++...+. ......++....+
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a-~--~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANA-Q--AAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-H--HcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 45788999999999999998766654 1 22356799988777664 356666654322 1223344555555
Q ss_pred HHHhcC-CcEEEEEccCC
Q 042817 254 FKILSN-KKFVLLLDDMW 270 (922)
Q Consensus 254 ~~~l~~-kr~LlVlDdv~ 270 (922)
.+.++. +--|||+|-+.
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 555544 56699999985
No 394
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.34 E-value=0.036 Score=53.96 Aligned_cols=48 Identities=31% Similarity=0.414 Sum_probs=33.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHH
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIG 231 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 231 (922)
..+|+|-||=|+||||||++++++. + |. .++-.+.+++=+.....++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l---~--~~-~~~E~vednp~L~~FY~d~~ 51 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL---G--FK-VFYELVEDNPFLDLFYEDPE 51 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh---C--Cc-eeeecccCChHHHHHHHhHH
Confidence 4689999999999999999999998 2 22 23334455544455544443
No 395
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.32 E-value=0.097 Score=58.00 Aligned_cols=91 Identities=22% Similarity=0.270 Sum_probs=52.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcc-----cccCCCh-----
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSE-----SWKNKSP----- 246 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~----- 246 (922)
.-..++|+|..|+|||||++.+.... .....++...-.+...+.++.+..+..-+.... ..+....
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~----~~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNT----DADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC----CCCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 34689999999999999999888764 122334433334444566666655443221110 0011111
Q ss_pred hhhHHHHHHHh--cCCcEEEEEccCCC
Q 042817 247 VEKSCAIFKIL--SNKKFVLLLDDMWE 271 (922)
Q Consensus 247 ~~~~~~l~~~l--~~kr~LlVlDdv~~ 271 (922)
...+..+.+++ +++.+|+++||+-.
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 11223355555 57899999999854
No 396
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.32 E-value=0.14 Score=56.68 Aligned_cols=47 Identities=30% Similarity=0.270 Sum_probs=36.2
Q ss_pred CCcccchhhHHHHHHHHhc-------c---C--------CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 156 EPRIIGQESIFDDAWRCMI-------E---E--------QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 156 ~~~~vGr~~~~~~l~~~L~-------~---~--------~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...++|.++.++.+...+. . . ....+.++|++|+|||++|+.++...
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
Confidence 4568999998888765541 1 0 12468899999999999999999776
No 397
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.30 E-value=0.23 Score=50.89 Aligned_cols=49 Identities=18% Similarity=0.248 Sum_probs=32.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDI 230 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 230 (922)
.-.++.|.|.+|.||||+|.++..... +.. ..+++++.. .+..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~--~~g-~~~~yi~~e--~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFL--QNG-YSVSYVSTQ--LTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hCC-CcEEEEeCC--CCHHHHHHHH
Confidence 346999999999999999866655541 122 345666633 3455666555
No 398
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.29 E-value=0.11 Score=52.77 Aligned_cols=57 Identities=26% Similarity=0.344 Sum_probs=35.7
Q ss_pred HHHHHHHHhcc--CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCC
Q 042817 165 IFDDAWRCMIE--EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLN 222 (922)
Q Consensus 165 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~ 222 (922)
...++++.+.. .+..+|+|.|+||+|||||.-++.... ..+++=-.++-|+=|..++
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~-~~~g~~VaVlAVDPSSp~t 72 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL-RERGKRVAVLAVDPSSPFT 72 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH-HHTT--EEEEEE-GGGGCC
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH-hhcCCceEEEEECCCCCCC
Confidence 34455555543 466899999999999999999998888 3333333555555444443
No 399
>PRK06851 hypothetical protein; Provisional
Probab=94.27 E-value=0.71 Score=50.23 Aligned_cols=55 Identities=22% Similarity=0.276 Sum_probs=38.0
Q ss_pred cchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCC
Q 042817 160 IGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKD 220 (922)
Q Consensus 160 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~ 220 (922)
.|.-...+.+. ++--+++.|.|.+|+|||||++.++... . ...++..++-|.+.+
T Consensus 200 ~G~~s~~~~l~----~~~~~~~~i~G~pG~GKstl~~~i~~~a-~-~~G~~v~~~hC~~dP 254 (367)
T PRK06851 200 KGAVDFVPSLT----EGVKNRYFLKGRPGTGKSTMLKKIAKAA-E-ERGFDVEVYHCGFDP 254 (367)
T ss_pred CcHHhhHHhHh----cccceEEEEeCCCCCcHHHHHHHHHHHH-H-hCCCeEEEEeCCCCC
Confidence 34444444443 3445789999999999999999999987 2 445666555554443
No 400
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.27 E-value=0.062 Score=58.01 Aligned_cols=46 Identities=26% Similarity=0.419 Sum_probs=39.0
Q ss_pred CcccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 157 PRIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..+||.+..+..++-.+.++...-+.|.|..|+|||||++.+..-.
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 3579999999998777777666667799999999999999998765
No 401
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=0.46 Score=48.53 Aligned_cols=169 Identities=19% Similarity=0.251 Sum_probs=90.5
Q ss_pred CcccchhhHHHHHHHHhc----------cC--CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHH
Q 042817 157 PRIIGQESIFDDAWRCMI----------EE--QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLE 224 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~----------~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 224 (922)
+.+.|.|...+.+.+... .. .-+-|-++|++|.||+.||++|+... ...| ++||..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---nSTF-----FSvSSS---- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---NSTF-----FSVSSS---- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---CCce-----EEeehH----
Confidence 467888888888877643 11 24678899999999999999999987 2222 233322
Q ss_pred HHHHHHHhhccCCcccccCCChhhhHHHHHHHh-cCCcEEEEEccCCCc---------ccccccc----cc---CCCCCC
Q 042817 225 KVQEDIGKKIDMFSESWKNKSPVEKSCAIFKIL-SNKKFVLLLDDMWEP---------VDLTKVG----VP---IPNSTN 287 (922)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~---------~~~~~l~----~~---~~~~~~ 287 (922)
++.... ++ ..+.+...+.+.- .+|+-.|.+|.|+.. +.-..+. .. ......
T Consensus 201 DLvSKW---mG---------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~ 268 (439)
T KOG0739|consen 201 DLVSKW---MG---------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDND 268 (439)
T ss_pred HHHHHH---hc---------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCC
Confidence 111111 11 1233444455544 468999999999642 1111111 11 112233
Q ss_pred CcEEEEEcCChhhhcccc----ccceeecCCCCHHHHHH-HHHHhhCCCCCCCCCChhHHHHHHHHHhCCch
Q 042817 288 ASKVVFTTRYKEVCGKME----AHKKLRVECLTADDAWM-LFKVKVGEDTIDSHPEIPKHAQLVAKECGGLP 354 (922)
Q Consensus 288 gs~IivTtR~~~v~~~~~----~~~~~~l~~L~~~ea~~-Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 354 (922)
|.-|+-.|..+-+....- ..++| -||++..|.. +|.-+.+... +.-.+...+++.++..|..
T Consensus 269 gvLVLgATNiPw~LDsAIRRRFekRIY--IPLPe~~AR~~MF~lhlG~tp---~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 269 GVLVLGATNIPWVLDSAIRRRFEKRIY--IPLPEAHARARMFKLHLGDTP---HVLTEQDFKELARKTEGYS 335 (439)
T ss_pred ceEEEecCCCchhHHHHHHHHhhccee--ccCCcHHHhhhhheeccCCCc---cccchhhHHHHHhhcCCCC
Confidence 555555666554433210 01122 2566666655 5555554322 1222344566666766553
No 402
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.27 E-value=0.033 Score=54.52 Aligned_cols=23 Identities=48% Similarity=0.663 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+|+|.|.+|.||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 403
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.26 E-value=0.062 Score=52.99 Aligned_cols=36 Identities=33% Similarity=0.401 Sum_probs=29.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEE
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVV 216 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 216 (922)
.++|.|+|+.|+|||||++++.... ...|...+..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeec
Confidence 4789999999999999999999987 56776555544
No 404
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.22 E-value=0.04 Score=54.14 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+++|+|++|+||||+|+.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998876
No 405
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.22 E-value=0.099 Score=51.70 Aligned_cols=44 Identities=36% Similarity=0.505 Sum_probs=31.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHH
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEK 225 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~ 225 (922)
.|+|+|-||+||||+|..+.... ..++.| .+.-|+...++++..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l-~~~~~~-~VLvVDaDpd~nL~~ 45 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRL-LSKGGY-NVLVVDADPDSNLPE 45 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHH-HhcCCc-eEEEEeCCCCCChHH
Confidence 58999999999999999966665 223323 466677777666443
No 406
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.21 E-value=0.13 Score=57.08 Aligned_cols=90 Identities=18% Similarity=0.271 Sum_probs=52.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCC-CCHHHHHHHHHhhccCCccc--c--cCCCh-----
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKD-LNLEKVQEDIGKKIDMFSES--W--KNKSP----- 246 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~--~--~~~~~----- 246 (922)
.-..++|+|..|+|||||++.+++.. ..+.++++-+... ..+.++.+..+..-+..... . .+...
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 44688999999999999999998765 1244555555443 34555555444332211100 0 11111
Q ss_pred -hhhHHHHHHHh--cCCcEEEEEccCCC
Q 042817 247 -VEKSCAIFKIL--SNKKFVLLLDDMWE 271 (922)
Q Consensus 247 -~~~~~~l~~~l--~~kr~LlVlDdv~~ 271 (922)
...+..+.+++ +++.+|+++||+-.
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 11223355555 57999999999954
No 407
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.17 E-value=0.044 Score=53.51 Aligned_cols=25 Identities=36% Similarity=0.379 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...|.|+|++|+||||+|+.++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999987
No 408
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.16 E-value=0.047 Score=65.82 Aligned_cols=191 Identities=19% Similarity=0.144 Sum_probs=87.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccc-cCCChhhhHHHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESW-KNKSPVEKSCAIFK 255 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 255 (922)
+.+++.|+|+.|.||||+.+.+....-..... ++|.+.....+ ..+.++...++....-. ...+.......+..
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G----~~Vpa~~~~~~-~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~ 395 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSG----IPIPANEHSEI-PYFEEIFADIGDEQSIEQNLSTFSGHMKNISA 395 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhC----CCccCCccccc-cchhheeeecChHhHHhhhhhHHHHHHHHHHH
Confidence 44799999999999999999987662010110 11111110000 00111111111000000 00011111112233
Q ss_pred Hhc--CCcEEEEEccCCCcccc---cc----ccccCCCCCCCcEEEEEcCChhhhccccccceeecCCCCHH-HHHHHHH
Q 042817 256 ILS--NKKFVLLLDDMWEPVDL---TK----VGVPIPNSTNASKVVFTTRYKEVCGKMEAHKKLRVECLTAD-DAWMLFK 325 (922)
Q Consensus 256 ~l~--~kr~LlVlDdv~~~~~~---~~----l~~~~~~~~~gs~IivTtR~~~v~~~~~~~~~~~l~~L~~~-ea~~Lf~ 325 (922)
.+. ..+-|+++|..-...+. .. +...+. ..|+.+|+||...++.........+....+..+ +... |.
T Consensus 396 il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~-p~ 472 (771)
T TIGR01069 396 ILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLS-PT 472 (771)
T ss_pred HHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCc-eE
Confidence 333 47899999998764332 11 222221 357889999999877433211111111111111 1000 00
Q ss_pred HhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHHHhhhccCCCHHHHHHHHHHHhc
Q 042817 326 VKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITIGRAMSCKNKLEEWKHAVNVLKK 382 (922)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~~w~~~~~~l~~ 382 (922)
.+..... .-...|-+|++++ |+|-.+.--|..+.. ....+.+.+++.+..
T Consensus 473 Ykl~~G~-----~g~S~a~~iA~~~-Glp~~ii~~A~~~~~-~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 473 YKLLKGI-----PGESYAFEIAQRY-GIPHFIIEQAKTFYG-EFKEEINVLIEKLSA 522 (771)
T ss_pred EEECCCC-----CCCcHHHHHHHHh-CcCHHHHHHHHHHHH-hhHHHHHHHHHHHHH
Confidence 1110000 0134688888877 688877777766654 233455555555543
No 409
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.16 E-value=0.045 Score=55.25 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHH
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNK 201 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~ 201 (922)
.+++.|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 488999999999999999998743
No 410
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.11 E-value=0.09 Score=48.99 Aligned_cols=39 Identities=26% Similarity=0.469 Sum_probs=28.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCC
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSK 219 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 219 (922)
++|.|+|..|+|||||++.+.+... +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK--RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh--HcCCceEEEEEccC
Confidence 4799999999999999999999983 34555555666554
No 411
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.09 E-value=0.038 Score=51.87 Aligned_cols=20 Identities=50% Similarity=0.747 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 042817 180 IIGLYGAGGVGKTTLLKQLN 199 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~ 199 (922)
.|+|.|.||+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999988
No 412
>PF13245 AAA_19: Part of AAA domain
Probab=94.06 E-value=0.13 Score=42.00 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=18.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
-+++.|.|++|.|||+++.......
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4678889999999995554444443
No 413
>PRK13947 shikimate kinase; Provisional
Probab=94.06 E-value=0.046 Score=53.24 Aligned_cols=23 Identities=43% Similarity=0.459 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
-|.|+|++|+||||+|+.+++..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999987
No 414
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.05 E-value=0.21 Score=56.05 Aligned_cols=86 Identities=24% Similarity=0.242 Sum_probs=48.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCC-HHHHHHHHHhhccCCcccccCCChhhhHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLN-LEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKIL 257 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 257 (922)
+++.++|++|+||||++..++... .....-..+..|+...... ..+-++..++.++.+.. ...+..+....+.+ +
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~-~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~~-~ 297 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARY-ALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALEQ-L 297 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHHH-h
Confidence 599999999999999999888776 2012234566666543211 12223333444444432 12233344444433 2
Q ss_pred cCCcEEEEEccC
Q 042817 258 SNKKFVLLLDDM 269 (922)
Q Consensus 258 ~~kr~LlVlDdv 269 (922)
. ..=++++|..
T Consensus 298 ~-~~DlVlIDt~ 308 (424)
T PRK05703 298 R-DCDVILIDTA 308 (424)
T ss_pred C-CCCEEEEeCC
Confidence 3 3457888866
No 415
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.05 E-value=0.079 Score=48.20 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+-|-|.|-+|+||||+|.+++...
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHh
Confidence 457899999999999999999664
No 416
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.05 E-value=0.045 Score=53.54 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
++|.+.|++|.||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998875
No 417
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.02 E-value=0.095 Score=55.86 Aligned_cols=49 Identities=31% Similarity=0.323 Sum_probs=36.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHH
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQED 229 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 229 (922)
.+++.+.|.||+||||+|-+.+-... .....++-|+.....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA---~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLA---ESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHH---HcCCcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999998766652 22255777877777776666544
No 418
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.02 E-value=0.17 Score=52.92 Aligned_cols=104 Identities=18% Similarity=0.225 Sum_probs=58.8
Q ss_pred cchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcc
Q 042817 160 IGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSE 239 (922)
Q Consensus 160 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 239 (922)
.|......+.+..+......+|.|.|..|.||||+++++.+... ..-..++.+.-........ ..++...
T Consensus 62 lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~---~~~~~iitiEdp~E~~~~~-----~~q~~v~-- 131 (264)
T cd01129 62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELN---TPEKNIITVEDPVEYQIPG-----INQVQVN-- 131 (264)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhC---CCCCeEEEECCCceecCCC-----ceEEEeC--
Confidence 45444443444444444456899999999999999999877651 1112333332111111110 0111111
Q ss_pred cccCCChhhhHHHHHHHhcCCcEEEEEccCCCccccc
Q 042817 240 SWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPVDLT 276 (922)
Q Consensus 240 ~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~ 276 (922)
..........++..++..+=.++++++.+.+...
T Consensus 132 ---~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~ 165 (264)
T cd01129 132 ---EKAGLTFARGLRAILRQDPDIIMVGEIRDAETAE 165 (264)
T ss_pred ---CcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHH
Confidence 1111234567788888889999999998876544
No 419
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.01 E-value=0.042 Score=51.88 Aligned_cols=23 Identities=48% Similarity=0.713 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+|.|.|.+|.||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 420
>PRK08149 ATP synthase SpaL; Validated
Probab=93.99 E-value=0.18 Score=55.80 Aligned_cols=90 Identities=16% Similarity=0.273 Sum_probs=52.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeC-CCCCHHHHHHHHHhhccCCc-----ccccCC-----C
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVS-KDLNLEKVQEDIGKKIDMFS-----ESWKNK-----S 245 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~-----~~~~~~-----~ 245 (922)
+-..++|+|..|+|||||++.+++.. .-+.++...+. +..++.++..+......... ...+.. .
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 44689999999999999999988764 22333444443 33456666666655322110 000111 1
Q ss_pred hhhhHHHHHHHh--cCCcEEEEEccCCC
Q 042817 246 PVEKSCAIFKIL--SNKKFVLLLDDMWE 271 (922)
Q Consensus 246 ~~~~~~~l~~~l--~~kr~LlVlDdv~~ 271 (922)
....+..+.+++ ++|++||++||+-.
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 112233445555 57999999999854
No 421
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.99 E-value=0.42 Score=51.38 Aligned_cols=26 Identities=38% Similarity=0.511 Sum_probs=23.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...+++++|++|+||||++..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999999887
No 422
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.99 E-value=0.16 Score=59.77 Aligned_cols=74 Identities=18% Similarity=0.182 Sum_probs=50.2
Q ss_pred CcccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhcc
Q 042817 157 PRIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (922)
..++|.++.++.+...+.... -+.++|++|+||||+|+++.+... ...|...+++.-+. .+...+++.++..++
T Consensus 18 ~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~--~~~~~~~~~~~n~~-~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLP--DEELEDILVYPNPE-DPNMPRIVEVPAGEG 91 (608)
T ss_pred hhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcC--chhheeEEEEeCCC-CCchHHHHHHHHhhc
Confidence 467999988887777776543 555999999999999999998872 33444444443332 244455666666554
No 423
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.98 E-value=0.061 Score=52.67 Aligned_cols=23 Identities=48% Similarity=0.881 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+|+|.|.+|.||||+|+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999887
No 424
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.97 E-value=0.041 Score=52.26 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
++.|+|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998875
No 425
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.95 E-value=0.059 Score=52.71 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=23.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..+|+|+|++|.||||+|++++...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999999987
No 426
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.95 E-value=0.26 Score=55.58 Aligned_cols=58 Identities=26% Similarity=0.319 Sum_probs=35.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCC-CCHHHHHHHHHhhccCC
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKD-LNLEKVQEDIGKKIDMF 237 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~ 237 (922)
.|++++|+.|+||||++..++... ..+..-..+..++.... ....+-++..++.++.+
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~-~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVp 315 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARC-VMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVP 315 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHH-HHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCC
Confidence 699999999999999999999876 22222223455554321 12333344455555543
No 427
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.93 E-value=0.15 Score=56.65 Aligned_cols=93 Identities=19% Similarity=0.371 Sum_probs=58.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCC-CHHHHHHHHHhhccCCccc----ccCCCh-----
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDL-NLEKVQEDIGKKIDMFSES----WKNKSP----- 246 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~----- 246 (922)
.-.-++|.|.+|+|||+|+.++.... . +.+-+.++++-+.... .+.++.+++...-.+.... ..+...
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~-~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNM-V-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHH-H-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 34679999999999999999988876 2 2334678888776544 4556666665432111000 011111
Q ss_pred -hhhHHHHHHHhc---CCcEEEEEccCCC
Q 042817 247 -VEKSCAIFKILS---NKKFVLLLDDMWE 271 (922)
Q Consensus 247 -~~~~~~l~~~l~---~kr~LlVlDdv~~ 271 (922)
...+..+.++++ ++++|+++||+-.
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 122334566664 5899999999954
No 428
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.87 E-value=0.11 Score=49.76 Aligned_cols=113 Identities=22% Similarity=0.264 Sum_probs=61.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCC--HHHHHHHHHhhccCCcccccCCChhhhHHHHHH
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLN--LEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFK 255 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 255 (922)
-.+++|+|..|.|||||++.+.... ....+.+++....... ... ....+.... +-..-+...-.+..
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~----~~~~G~i~~~~~~~~~~~~~~----~~~~i~~~~---qlS~G~~~r~~l~~ 93 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKLPLEE----LRRRIGYVP---QLSGGQRQRVALAR 93 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccCCHHH----HHhceEEEe---eCCHHHHHHHHHHH
Confidence 3699999999999999999998765 2345555554321111 111 112222110 01111222233555
Q ss_pred HhcCCcEEEEEccCCCccc------cccccccCCCCCCCcEEEEEcCChhhhcc
Q 042817 256 ILSNKKFVLLLDDMWEPVD------LTKVGVPIPNSTNASKVVFTTRYKEVCGK 303 (922)
Q Consensus 256 ~l~~kr~LlVlDdv~~~~~------~~~l~~~~~~~~~gs~IivTtR~~~v~~~ 303 (922)
.+...+-++++|+.-..-| +.++...+.. .+..|+++|.+......
T Consensus 94 ~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~--~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 94 ALLLNPDLLLLDEPTSGLDPASRERLLELLRELAE--EGRTVIIVTHDPELAEL 145 (157)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHH
Confidence 5666788999999865432 2222222212 24568888887766544
No 429
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.86 E-value=0.1 Score=54.53 Aligned_cols=24 Identities=42% Similarity=0.401 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+.|.|+|.+|.||||+|+.+....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 578999999999999999999987
No 430
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.85 E-value=0.35 Score=53.68 Aligned_cols=60 Identities=27% Similarity=0.299 Sum_probs=35.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCC-CCHHHHHHHHHhhccCCc
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKD-LNLEKVQEDIGKKIDMFS 238 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~ 238 (922)
-.+++++|+.|+||||++..++... ......+.+..+..... ....+-+...++.++.+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~-~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~ 251 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARA-VIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSV 251 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCce
Confidence 3699999999999999999888764 21222233444433221 122333445555555543
No 431
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.85 E-value=0.12 Score=53.00 Aligned_cols=56 Identities=29% Similarity=0.398 Sum_probs=39.9
Q ss_pred HHHHHHhcc--CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCH
Q 042817 167 DDAWRCMIE--EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNL 223 (922)
Q Consensus 167 ~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 223 (922)
.+++..+.. ++..+|+|.|.||+|||||.-++-... ..+++--.++-|+-|..++-
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TG 95 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTG 95 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCC
Confidence 455555542 466799999999999999999998888 44455455666665555543
No 432
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.84 E-value=0.07 Score=54.68 Aligned_cols=89 Identities=19% Similarity=0.142 Sum_probs=51.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcc-------------ccc-
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSE-------------SWK- 242 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-------------~~~- 242 (922)
.-.++.|.|.+|+|||++|.++....... .=..++||+.... ..++.+.+. .++...+ ...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~--~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN--FGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH--HT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh--cCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEeccccc
Confidence 34699999999999999998866544121 0235778876544 344444433 3321110 000
Q ss_pred ----CCChhhhHHHHHHHhcC-CcEEEEEccCC
Q 042817 243 ----NKSPVEKSCAIFKILSN-KKFVLLLDDMW 270 (922)
Q Consensus 243 ----~~~~~~~~~~l~~~l~~-kr~LlVlDdv~ 270 (922)
..+.......+.+.++. +...+|+|.+.
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 24556666666666654 45688888763
No 433
>PRK13949 shikimate kinase; Provisional
Probab=93.83 E-value=0.054 Score=52.43 Aligned_cols=24 Identities=50% Similarity=0.473 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+-|.|+|++|.||||+++.+++..
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 358899999999999999999987
No 434
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.83 E-value=0.2 Score=53.58 Aligned_cols=90 Identities=18% Similarity=0.285 Sum_probs=51.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeC-CCCCHHHHHHHHHhhccCCcc-----cccCCC-----
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVS-KDLNLEKVQEDIGKKIDMFSE-----SWKNKS----- 245 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~-----~~~~~~----- 245 (922)
.-..++|+|..|.|||||++.+.+.. . -+..+..-+. +..++.++.......-+.... ..+...
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~---~--~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGT---T--ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC---C--CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 34688999999999999999888765 1 1233333333 344566666555544221110 001111
Q ss_pred hhhhHHHHHHHh--cCCcEEEEEccCCC
Q 042817 246 PVEKSCAIFKIL--SNKKFVLLLDDMWE 271 (922)
Q Consensus 246 ~~~~~~~l~~~l--~~kr~LlVlDdv~~ 271 (922)
.......+.+++ ++|.+|+++||+-.
T Consensus 143 ~~~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 143 AAYTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 111122344444 57999999999844
No 435
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.81 E-value=0.18 Score=56.25 Aligned_cols=93 Identities=19% Similarity=0.378 Sum_probs=57.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCC-CCHHHHHHHHHhhccCCccc----ccCCCh-----
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKD-LNLEKVQEDIGKKIDMFSES----WKNKSP----- 246 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~----- 246 (922)
.-..++|.|..|+|||||+.++..... ..+=+.++++-+... ..+.++.+.+...-...... ..+...
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~--~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 346899999999999999999887762 222245677766544 34666777666532211100 011111
Q ss_pred -hhhHHHHHHHh---cCCcEEEEEccCCC
Q 042817 247 -VEKSCAIFKIL---SNKKFVLLLDDMWE 271 (922)
Q Consensus 247 -~~~~~~l~~~l---~~kr~LlVlDdv~~ 271 (922)
...+..+.+++ +++.+||++|++-.
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 12233466666 57999999999854
No 436
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.76 E-value=0.21 Score=51.68 Aligned_cols=90 Identities=16% Similarity=0.224 Sum_probs=50.8
Q ss_pred CeeEEEEEcCCCCcHHHHH-HHHHHHhhhccCCCceE-EEEEeCCC-CCHHHHHHHHHhhccCCcc----cccCCChhh-
Q 042817 177 QVGIIGLYGAGGVGKTTLL-KQLNNKLCQERHDFDIV-IWVVVSKD-LNLEKVQEDIGKKIDMFSE----SWKNKSPVE- 248 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~F~~~-~wv~~s~~-~~~~~~~~~i~~~l~~~~~----~~~~~~~~~- 248 (922)
+-+-++|.|..|+|||+|| ..+.+.. .-+.+ +++-+.+. ..+.++.+.+...-..... ...+.....
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 3357899999999999996 5565543 22344 55555544 4466677666643211100 001111111
Q ss_pred -----hHHHHHHHh--cCCcEEEEEccCCC
Q 042817 249 -----KSCAIFKIL--SNKKFVLLLDDMWE 271 (922)
Q Consensus 249 -----~~~~l~~~l--~~kr~LlVlDdv~~ 271 (922)
.+-.+.+++ +++.+|+|+||+-.
T Consensus 143 ~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr 172 (274)
T cd01132 143 YLAPYTGCAMGEYFMDNGKHALIIYDDLSK 172 (274)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEcChHH
Confidence 122334444 57999999999854
No 437
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=93.76 E-value=0.082 Score=57.06 Aligned_cols=46 Identities=28% Similarity=0.435 Sum_probs=40.3
Q ss_pred CcccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 157 PRIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+.+||.++.+..++..+.++...-|.|.|..|.||||+|+.+++-.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 3679999999999888888777777799999999999999998776
No 438
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.73 E-value=0.18 Score=51.01 Aligned_cols=22 Identities=36% Similarity=0.518 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 042817 181 IGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 181 i~I~G~gGiGKTtLa~~v~~~~ 202 (922)
|.|+|++|+||||+|+.++...
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999998776
No 439
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.71 E-value=0.29 Score=50.54 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+..|+|+||+|||+||..++-..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~v 25 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999998765
No 440
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=93.70 E-value=0.15 Score=56.30 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=30.9
Q ss_pred HHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 165 IFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 165 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..+.+++.+.......+.|.|.||.|||+|.+++.+..
T Consensus 9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 45556666655556788999999999999999999987
No 441
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=93.69 E-value=0.12 Score=60.04 Aligned_cols=45 Identities=27% Similarity=0.337 Sum_probs=37.8
Q ss_pred cccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 158 RIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.++|.+..++.+...+......-+-|+|++|+|||++|+.+++..
T Consensus 66 ~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999998887765544567899999999999999998764
No 442
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.68 E-value=0.069 Score=51.35 Aligned_cols=26 Identities=38% Similarity=0.546 Sum_probs=23.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...+++|+|..|.|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 45699999999999999999999887
No 443
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.67 E-value=0.18 Score=55.86 Aligned_cols=90 Identities=19% Similarity=0.327 Sum_probs=53.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCC-CCHHHHHHHHHhhccCCccc--c--cCCChhh---
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKD-LNLEKVQEDIGKKIDMFSES--W--KNKSPVE--- 248 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~--~--~~~~~~~--- 248 (922)
+-..++|.|..|+|||||.+.+++.. .-+.++++-+.+. ..+.++.+..+..-+..... . .+.....
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~-----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSA-----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCC-----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence 44689999999999999999999875 2256677766554 34555554443321111100 0 1111111
Q ss_pred ---hHHHHHHHh--cCCcEEEEEccCCC
Q 042817 249 ---KSCAIFKIL--SNKKFVLLLDDMWE 271 (922)
Q Consensus 249 ---~~~~l~~~l--~~kr~LlVlDdv~~ 271 (922)
.+..+.+++ +++++|+++||+-.
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 122345555 57999999999854
No 444
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.65 E-value=0.15 Score=55.52 Aligned_cols=62 Identities=26% Similarity=0.386 Sum_probs=46.5
Q ss_pred cccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHH
Q 042817 158 RIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQ 227 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 227 (922)
.++|+++.+..+...+..+ +-+-+.|.+|+|||+||+.++... ... .++|.+.......++.
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l---~~~---~~~i~~t~~l~p~d~~ 86 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARAL---GLP---FVRIQCTPDLLPSDLL 86 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHh---CCC---eEEEecCCCCCHHHhc
Confidence 4789888888877766554 456789999999999999999987 333 3566666666666554
No 445
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=93.64 E-value=0.081 Score=51.03 Aligned_cols=69 Identities=16% Similarity=0.139 Sum_probs=41.2
Q ss_pred ccchhhHHHHHHHHhcc--CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHH
Q 042817 159 IIGQESIFDDAWRCMIE--EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIG 231 (922)
Q Consensus 159 ~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 231 (922)
+||....+.++++.+.. ..-.-|-|+|..|.||+.+|+.+++.-.+... ..+-|+++.- +.+.+-.++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~---pfi~vnc~~~-~~~~~e~~LF 71 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRKNG---PFISVNCAAL-PEELLESELF 71 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS----EEEEETTTS--HHHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccC---CeEEEehhhh-hcchhhhhhh
Confidence 46777777777776653 22245669999999999999999997522222 3355565533 3333444443
No 446
>PRK14530 adenylate kinase; Provisional
Probab=93.63 E-value=0.059 Score=54.70 Aligned_cols=24 Identities=38% Similarity=0.415 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+.|.|+|++|+||||+|+.++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999876
No 447
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.60 E-value=0.24 Score=47.85 Aligned_cols=83 Identities=13% Similarity=0.210 Sum_probs=47.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCC-hhhhHHHHHHHhc
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKS-PVEKSCAIFKILS 258 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~~~l~~~l~ 258 (922)
++.|.|.+|.||||+|..+.... .. ..+++.-.. ..-.+..+.|..........|.... +..+...+.....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~---~~---~~~~iat~~-~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~ 75 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS---GL---QVLYIATAQ-PFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA 75 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc---CC---CcEeCcCCC-CChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC
Confidence 68899999999999999998764 11 133443333 3344566666655443333332221 2233444443333
Q ss_pred CCcEEEEEccCC
Q 042817 259 NKKFVLLLDDMW 270 (922)
Q Consensus 259 ~kr~LlVlDdv~ 270 (922)
+ .-++++|.+.
T Consensus 76 ~-~~~VlID~Lt 86 (170)
T PRK05800 76 P-GRCVLVDCLT 86 (170)
T ss_pred C-CCEEEehhHH
Confidence 3 3378999873
No 448
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.57 E-value=0.052 Score=53.37 Aligned_cols=24 Identities=42% Similarity=0.542 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
++|+|+|+.|+||||||+.+++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999999864
No 449
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=93.57 E-value=0.084 Score=56.85 Aligned_cols=46 Identities=28% Similarity=0.459 Sum_probs=37.0
Q ss_pred CcccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 157 PRIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..++|.+..++.+.-.+.+.+..-+-+.|.+|.||||+|+.+..-.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 3679999999887765544444458899999999999999998775
No 450
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.55 E-value=0.11 Score=55.34 Aligned_cols=46 Identities=26% Similarity=0.341 Sum_probs=41.3
Q ss_pred CcccchhhHHHHHHHHhcc------CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 157 PRIIGQESIFDDAWRCMIE------EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..|+|.++.++++++.+.. ..-+|+.++|+.|.||||||..+.+-.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999863 356899999999999999999998887
No 451
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=93.55 E-value=0.18 Score=60.99 Aligned_cols=60 Identities=13% Similarity=0.195 Sum_probs=42.5
Q ss_pred cccchhhHHHHHHHHhcc--CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCC
Q 042817 158 RIIGQESIFDDAWRCMIE--EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKD 220 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~ 220 (922)
.++|+...+.++.+.+.. ..-.-|-|+|..|+|||++|+.+++...+ .-...+.+++..-
T Consensus 377 ~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r---~~~~~v~i~c~~~ 438 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGR---NNRRMVKMNCAAM 438 (686)
T ss_pred ceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCC---CCCCeEEEecccC
Confidence 589998888887766642 23357889999999999999999987521 1123455555543
No 452
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.54 E-value=0.081 Score=53.34 Aligned_cols=32 Identities=25% Similarity=0.443 Sum_probs=27.6
Q ss_pred HHhccCCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 171 RCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 171 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+.+...++++|+++|..|+|||||..++.+..
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34455689999999999999999999998875
No 453
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.53 E-value=0.25 Score=55.01 Aligned_cols=93 Identities=19% Similarity=0.377 Sum_probs=57.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCC-CCHHHHHHHHHhhccCCccc----ccCCCh-----
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKD-LNLEKVQEDIGKKIDMFSES----WKNKSP----- 246 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~----- 246 (922)
.-..++|.|..|+|||||+.++..... ..+=..++++-+... ..+.++.+.+...=...... ..+...
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~--~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHH--hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 446899999999999999999888762 222346777766544 44667777665432111100 011111
Q ss_pred -hhhHHHHHHHh---cCCcEEEEEccCCC
Q 042817 247 -VEKSCAIFKIL---SNKKFVLLLDDMWE 271 (922)
Q Consensus 247 -~~~~~~l~~~l---~~kr~LlVlDdv~~ 271 (922)
...+..+.+++ +++.+||++||+-.
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 11233456666 45899999999954
No 454
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.53 E-value=0.32 Score=46.94 Aligned_cols=80 Identities=18% Similarity=0.236 Sum_probs=49.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHHhcC-
Q 042817 181 IGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSN- 259 (922)
Q Consensus 181 i~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~- 259 (922)
+.|.|.+|.|||++|.++.... ...++++.-....+. ++.+.|.+....... .....+....+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~------~~~~~y~at~~~~d~-em~~rI~~H~~~R~~---~w~t~E~~~~l~~~l~~~ 71 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL------GGPVTYIATAEAFDD-EMAERIARHRKRRPA---HWRTIETPRDLVSALKEL 71 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc------CCCeEEEEccCcCCH-HHHHHHHHHHHhCCC---CceEeecHHHHHHHHHhc
Confidence 6789999999999999887542 235677766666654 355565554333322 23333344455555532
Q ss_pred -CcEEEEEccCC
Q 042817 260 -KKFVLLLDDMW 270 (922)
Q Consensus 260 -kr~LlVlDdv~ 270 (922)
+.-.+++|.+.
T Consensus 72 ~~~~~VLIDclt 83 (169)
T cd00544 72 DPGDVVLIDCLT 83 (169)
T ss_pred CCCCEEEEEcHh
Confidence 23379999973
No 455
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.51 E-value=0.065 Score=51.66 Aligned_cols=22 Identities=55% Similarity=0.721 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 042817 181 IGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 181 i~I~G~gGiGKTtLa~~v~~~~ 202 (922)
|.|+|.+|+||||+++.+.+..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6799999999999999999887
No 456
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.51 E-value=0.094 Score=56.07 Aligned_cols=46 Identities=33% Similarity=0.389 Sum_probs=31.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHH
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQ 227 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 227 (922)
+++.+.|-||+||||+|.+.+-...+ ++ ..+.-++.....++.+++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~-~G--~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALAR-RG--KRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH-TT--S-EEEEESSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhh-CC--CCeeEeecCCCccHHHHh
Confidence 68999999999999999888777632 22 346666655555554444
No 457
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.48 E-value=0.87 Score=52.31 Aligned_cols=149 Identities=15% Similarity=0.182 Sum_probs=77.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHHhc
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILS 258 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 258 (922)
.-|-++|++|.|||-||.+++... . .-+++|.+. +++. +.+| .+++.......+.-.
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~---~-----~~fisvKGP----ElL~---KyIG--------aSEq~vR~lF~rA~~ 758 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNS---N-----LRFISVKGP----ELLS---KYIG--------ASEQNVRDLFERAQS 758 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhC---C-----eeEEEecCH----HHHH---HHhc--------ccHHHHHHHHHHhhc
Confidence 357899999999999999998876 1 234555543 1211 1222 223333333333335
Q ss_pred CCcEEEEEccCCCcc-------------ccccccccCC--CCCCCcEEEEEcCChhhhcc--cc---ccceeecCCCCHH
Q 042817 259 NKKFVLLLDDMWEPV-------------DLTKVGVPIP--NSTNASKVVFTTRYKEVCGK--ME---AHKKLRVECLTAD 318 (922)
Q Consensus 259 ~kr~LlVlDdv~~~~-------------~~~~l~~~~~--~~~~gs~IivTtR~~~v~~~--~~---~~~~~~l~~L~~~ 318 (922)
-+++.|.||..+... ....+...+. .+-.|--|+-.|..++.... .. -++.+.-+.-++.
T Consensus 759 a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~ 838 (952)
T KOG0735|consen 759 AKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEP 838 (952)
T ss_pred cCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcH
Confidence 699999999987631 1222222221 12345556655554544321 11 1233334445566
Q ss_pred HHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCch
Q 042817 319 DAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLP 354 (922)
Q Consensus 319 ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 354 (922)
|-.++|...+..-..+...+ .+.++.+..|..
T Consensus 839 eRl~il~~ls~s~~~~~~vd----l~~~a~~T~g~t 870 (952)
T KOG0735|consen 839 ERLEILQVLSNSLLKDTDVD----LECLAQKTDGFT 870 (952)
T ss_pred HHHHHHHHHhhccCCccccc----hHHHhhhcCCCc
Confidence 77777776654332222233 344555555554
No 458
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.46 E-value=0.081 Score=52.73 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=22.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.-.+++|+|..|.||||||+.++--.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 34589999999999999999997665
No 459
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.45 E-value=0.066 Score=51.03 Aligned_cols=22 Identities=45% Similarity=0.523 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 042817 181 IGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 181 i~I~G~gGiGKTtLa~~v~~~~ 202 (922)
|.|+|++|.||||+|+.++...
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999876
No 460
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.42 E-value=0.1 Score=51.63 Aligned_cols=104 Identities=16% Similarity=0.115 Sum_probs=53.7
Q ss_pred HHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCC
Q 042817 166 FDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKS 245 (922)
Q Consensus 166 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~ 245 (922)
..+++..... ....+.|+|..|.||||+++.+.... . .. ..++.+. .......-..... ++...........
T Consensus 14 ~~~~l~~~v~-~g~~i~I~G~tGSGKTTll~aL~~~i-~--~~-~~~i~ie--d~~E~~~~~~~~~-~~~~~~~~~~~~~ 85 (186)
T cd01130 14 QAAYLWLAVE-ARKNILISGGTGSGKTTLLNALLAFI-P--PD-ERIITIE--DTAELQLPHPNWV-RLVTRPGNVEGSG 85 (186)
T ss_pred HHHHHHHHHh-CCCEEEEECCCCCCHHHHHHHHHhhc-C--CC-CCEEEEC--CccccCCCCCCEE-EEEEecCCCCCCC
Confidence 3334443333 34689999999999999999998776 2 11 2233221 1100000000000 0100000001112
Q ss_pred hhhhHHHHHHHhcCCcEEEEEccCCCcccccc
Q 042817 246 PVEKSCAIFKILSNKKFVLLLDDMWEPVDLTK 277 (922)
Q Consensus 246 ~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~ 277 (922)
.....+.+...++..+=.++++.+.+.+.+..
T Consensus 86 ~~~~~~~l~~~lR~~pd~i~igEir~~ea~~~ 117 (186)
T cd01130 86 EVTMADLLRSALRMRPDRIIVGEVRGGEALDL 117 (186)
T ss_pred ccCHHHHHHHHhccCCCEEEEEccCcHHHHHH
Confidence 23345566677777888889999988765543
No 461
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.39 E-value=0.34 Score=49.71 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+|+|.|.+|.||||+|+++....
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l 23 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF 23 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999877
No 462
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.38 E-value=0.13 Score=48.46 Aligned_cols=29 Identities=31% Similarity=0.473 Sum_probs=25.4
Q ss_pred ccCCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 174 IEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 174 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...+..+|.++|.+|.||||+|.+++...
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L 47 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKL 47 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 33455799999999999999999999988
No 463
>PRK15453 phosphoribulokinase; Provisional
Probab=93.38 E-value=0.37 Score=49.95 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=23.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...+|+|.|.+|.||||+|+.+.+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998766
No 464
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.37 E-value=0.49 Score=50.02 Aligned_cols=52 Identities=21% Similarity=0.178 Sum_probs=36.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKK 233 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 233 (922)
-.++.|.|.+|+||||++.+++.... ..+=..++|++... +..++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~--~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI--TQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH--HhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 35888999999999999999887762 22234688887665 345555555443
No 465
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.37 E-value=0.078 Score=52.59 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..+|.|.|.+|+||||+|+.++...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999999875
No 466
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.36 E-value=0.4 Score=48.36 Aligned_cols=58 Identities=21% Similarity=0.295 Sum_probs=36.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEE---------eCCCCCHHHH--HHHHHhhccCC
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVV---------VSKDLNLEKV--QEDIGKKIDMF 237 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~---------~s~~~~~~~~--~~~i~~~l~~~ 237 (922)
+..+|.++||+|.||||..+.++.+.. ..+....-|+ ..-+.++++. .++..++.++.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~---~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LG 86 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLH---AKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLG 86 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHh---hccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCC
Confidence 345788999999999999999998872 2222222222 2233455543 56677776544
No 467
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.36 E-value=0.35 Score=57.35 Aligned_cols=88 Identities=22% Similarity=0.288 Sum_probs=50.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCC-CCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHH
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKD-LNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKI 256 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 256 (922)
-++++++|+.|+||||.+..++... ........+..++.... ....+-++...+.++.+.. ...+..++.+.+. .
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~-~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~--~~~~~~~l~~al~-~ 260 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC-VAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH--AVKDAADLRFALA-A 260 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH-HHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc--ccCCHHHHHHHHH-H
Confidence 3699999999999999999998776 21222234555553321 1234455666666665432 2234444443333 3
Q ss_pred hcCCcEEEEEccCC
Q 042817 257 LSNKKFVLLLDDMW 270 (922)
Q Consensus 257 l~~kr~LlVlDdv~ 270 (922)
++++. ++++|-.-
T Consensus 261 ~~~~D-~VLIDTAG 273 (767)
T PRK14723 261 LGDKH-LVLIDTVG 273 (767)
T ss_pred hcCCC-EEEEeCCC
Confidence 44443 66677664
No 468
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.30 E-value=0.15 Score=55.78 Aligned_cols=112 Identities=17% Similarity=0.163 Sum_probs=62.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKI 256 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 256 (922)
....|.|.|+.|.||||+++.+.+.. .......++.- .+.. +...... ..+....+ ...+.......++..
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~ti-Edp~--E~~~~~~-~~~i~q~e--vg~~~~~~~~~l~~~ 191 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIITI-EDPI--EYVHRNK-RSLINQRE--VGLDTLSFANALRAA 191 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEEE-cCCh--hhhccCc-cceEEccc--cCCCCcCHHHHHHHh
Confidence 34689999999999999999998876 22333344432 2211 1110000 00000000 011223455667888
Q ss_pred hcCCcEEEEEccCCCccccccccccCCCCCCCcEEEEEcCChhh
Q 042817 257 LSNKKFVLLLDDMWEPVDLTKVGVPIPNSTNASKVVFTTRYKEV 300 (922)
Q Consensus 257 l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTtR~~~v 300 (922)
|+..+=.|++|.+.+.+.+...... ...|..|+.|.-..++
T Consensus 192 lr~~pd~i~vgEird~~~~~~~l~a---a~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 192 LREDPDVILIGEMRDLETVELALTA---AETGHLVFGTLHTNSA 232 (343)
T ss_pred hccCCCEEEEeCCCCHHHHHHHHHH---HHcCCcEEEEEcCCCH
Confidence 8999999999999876655432221 1235556666654443
No 469
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=93.29 E-value=0.035 Score=54.82 Aligned_cols=116 Identities=18% Similarity=0.139 Sum_probs=56.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhh-ccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccc-cCCChhhhHHHHHHHh
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKLCQ-ERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESW-KNKSPVEKSCAIFKIL 257 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~~~-~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~~l 257 (922)
++.|+|+.|.||||+.+.+.-.... ..+.| ++. .. . .-....++...++...... ...........+...+
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~---v~a--~~-~-~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l 73 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSF---VPA--ES-A-ELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANIL 73 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCC---eee--hh-e-EecccceEEEEeCCCCchhccccHHHHHHHHHHHHH
Confidence 4679999999999999999843211 01111 111 00 0 0000111111111111000 1111222223445555
Q ss_pred cC--CcEEEEEccCCCccccc-------cccccCCCCCCCcEEEEEcCChhhhcc
Q 042817 258 SN--KKFVLLLDDMWEPVDLT-------KVGVPIPNSTNASKVVFTTRYKEVCGK 303 (922)
Q Consensus 258 ~~--kr~LlVlDdv~~~~~~~-------~l~~~~~~~~~gs~IivTtR~~~v~~~ 303 (922)
.. ++-|+++|..-...+.. .+...+.. ..++.+|++|.+.++...
T Consensus 74 ~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~ 127 (185)
T smart00534 74 KNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKL 127 (185)
T ss_pred HhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHH
Confidence 44 88999999986543221 11122211 136789999998877554
No 470
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=93.28 E-value=0.27 Score=54.55 Aligned_cols=94 Identities=13% Similarity=0.166 Sum_probs=56.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcc--CCCc---------eEEEEEeCCCCCHHHHHHHHHhhcc-CCccc--c-
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQER--HDFD---------IVIWVVVSKDLNLEKVQEDIGKKID-MFSES--W- 241 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~F~---------~~~wv~~s~~~~~~~~~~~i~~~l~-~~~~~--~- 241 (922)
.-+-++|.|-.|+|||||+.++.+.. ... .-.| .++++-+.+.....+.....+..-+ +.... .
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~-~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~a 218 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQA-GLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLN 218 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhh-ccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEE
Confidence 34678999999999999999998876 210 0022 5677777777665555555555443 11100 0
Q ss_pred -cCCCh------hhhHHHHHHHhc---CCcEEEEEccCCC
Q 042817 242 -KNKSP------VEKSCAIFKILS---NKKFVLLLDDMWE 271 (922)
Q Consensus 242 -~~~~~------~~~~~~l~~~l~---~kr~LlVlDdv~~ 271 (922)
.+... ...+..+.++++ ++++|+++||+-.
T Consensus 219 tsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 219 LANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 01111 112234566665 5999999999954
No 471
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.25 E-value=0.22 Score=55.44 Aligned_cols=91 Identities=20% Similarity=0.220 Sum_probs=54.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCccc--c--cCCC-h-----
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSES--W--KNKS-P----- 246 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~--~--~~~~-~----- 246 (922)
.-..++|.|..|.|||||++.++... . .-..+++..-.+...+.++.+.+...-+..... . .+.. .
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~-~---~d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGT-Q---CDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-C---CCeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 44689999999999999999998765 1 112455544445556666666665442211100 0 0111 1
Q ss_pred hhhHHHHHHHh--cCCcEEEEEccCCC
Q 042817 247 VEKSCAIFKIL--SNKKFVLLLDDMWE 271 (922)
Q Consensus 247 ~~~~~~l~~~l--~~kr~LlVlDdv~~ 271 (922)
......+.+++ +++.+|+++||+-.
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 238 AYVATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 11223345555 47899999999854
No 472
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.24 E-value=0.078 Score=51.56 Aligned_cols=24 Identities=42% Similarity=0.494 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..|.|+|+.|.||||+|+.+.+..
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHc
Confidence 468999999999999999999886
No 473
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.20 E-value=0.061 Score=51.86 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 042817 181 IGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 181 i~I~G~gGiGKTtLa~~v~~~~ 202 (922)
|.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999876
No 474
>PRK13975 thymidylate kinase; Provisional
Probab=93.20 E-value=0.082 Score=52.80 Aligned_cols=24 Identities=46% Similarity=0.512 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+|+|.|+.|+||||+|+.+++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999987
No 475
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.20 E-value=0.071 Score=53.68 Aligned_cols=25 Identities=40% Similarity=0.469 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
-.+|+|+|++|+||||||+.++...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999875
No 476
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=93.19 E-value=0.23 Score=55.38 Aligned_cols=90 Identities=19% Similarity=0.280 Sum_probs=51.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCC-CCHHHHHHHHHhhccCCcc-----cccCCCh----
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKD-LNLEKVQEDIGKKIDMFSE-----SWKNKSP---- 246 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~-----~~~~~~~---- 246 (922)
.-..++|+|..|+|||||++.+.... ..+.++...+... .++.++...+...-+.... ..+....
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~-----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~ 241 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFT-----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLR 241 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHH
Confidence 44689999999999999999887653 2234444434332 3455555555543222110 0011111
Q ss_pred -hhhHHHHHHHh--cCCcEEEEEccCCC
Q 042817 247 -VEKSCAIFKIL--SNKKFVLLLDDMWE 271 (922)
Q Consensus 247 -~~~~~~l~~~l--~~kr~LlVlDdv~~ 271 (922)
...+..+.+++ +++++||++||+-.
T Consensus 242 a~~~a~aiAEyfrd~G~~VLl~~DslTR 269 (451)
T PRK05688 242 AAMYCTRIAEYFRDKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecchhH
Confidence 11123345555 57999999999854
No 477
>PRK13948 shikimate kinase; Provisional
Probab=93.16 E-value=0.085 Score=51.57 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..+.|.++|+.|+||||+++.+.+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 44689999999999999999999886
No 478
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.15 E-value=0.13 Score=51.45 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=24.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 176 EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 176 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
....+|+|+|++|.||||+|+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345799999999999999999999876
No 479
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.12 E-value=0.21 Score=49.96 Aligned_cols=23 Identities=43% Similarity=0.668 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+|+|.|+.|+||||+++.+++..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999987
No 480
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.12 E-value=0.071 Score=52.72 Aligned_cols=24 Identities=38% Similarity=0.584 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+++|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997765
No 481
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=93.12 E-value=0.13 Score=52.44 Aligned_cols=76 Identities=14% Similarity=0.149 Sum_probs=61.8
Q ss_pred chhhHHHHHHHhhhhhhchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 042817 12 SCDAIFSHCLNCTERQVAFISELEDNLDALQAEMQKLIEVRDDVMTRVIIAEQQQMKRLNQVQGWLKRVEAVEAEVRELQ 91 (922)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~a~~~~~~~~~~~~~Wl~~v~~~~~~~~d~~ 91 (922)
-++-+++.+-.+.......+..++.+++-++.|+++|+.||+.+ ++......+. ......++...||++|.++
T Consensus 297 yVdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V------~ee~~nkh~~-~ed~a~~ii~kAyevEYVV 369 (402)
T PF12061_consen 297 YVDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHV------VEEPHNKHDT-NEDCATQIIRKAYEVEYVV 369 (402)
T ss_pred HHHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHH------Hhccchhhhh-hhhHHHHHHHHHhheeeee
Confidence 35677788888888888888999999999999999999999997 3332222223 7889999999999999999
Q ss_pred HHH
Q 042817 92 RIQ 94 (922)
Q Consensus 92 d~~ 94 (922)
|..
T Consensus 370 DaC 372 (402)
T PF12061_consen 370 DAC 372 (402)
T ss_pred ehh
Confidence 864
No 482
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.11 E-value=0.058 Score=29.70 Aligned_cols=15 Identities=33% Similarity=0.510 Sum_probs=5.2
Q ss_pred cCCeeeeccCCcccc
Q 042817 587 SLQYLNLSSTGIRVL 601 (922)
Q Consensus 587 ~L~~L~L~~~~i~~l 601 (922)
+|+.|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444443
No 483
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.10 E-value=0.093 Score=48.86 Aligned_cols=48 Identities=31% Similarity=0.425 Sum_probs=32.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCc
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFS 238 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 238 (922)
..++.|+|.+|+||||+.+.+.... +..+ -.+.-.+.-+++...+...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l--~~~~-----------ivNyG~~Mle~A~k~glve 51 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL--VKHK-----------IVNYGDLMLEIAKKKGLVE 51 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH--hhce-----------eeeHhHHHHHHHHHhCCcc
Confidence 5799999999999999998877654 1111 1134456666776666543
No 484
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.10 E-value=0.13 Score=59.01 Aligned_cols=54 Identities=26% Similarity=0.447 Sum_probs=42.0
Q ss_pred cccchhhHHHHHHHHhcc-----CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEE
Q 042817 158 RIIGQESIFDDAWRCMIE-----EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVV 216 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 216 (922)
+++--..-++++..||.+ ...+++.++|++|+||||.++.+++.. .|+.+=|.+
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecC
Confidence 344445678888888864 235799999999999999999999887 466677764
No 485
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.04 E-value=0.14 Score=53.72 Aligned_cols=50 Identities=20% Similarity=0.269 Sum_probs=38.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHH
Q 042817 176 EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDI 230 (922)
Q Consensus 176 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 230 (922)
+.-+++.|+|.+|+|||++|.++.... ......++||+.... ...+.+..
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~--~~~l~~~~ 70 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEES--PEELLENA 70 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCC--HHHHHHHH
Confidence 356799999999999999999888887 344788999987764 34444443
No 486
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.03 E-value=0.42 Score=53.44 Aligned_cols=93 Identities=11% Similarity=0.173 Sum_probs=52.4
Q ss_pred CeeEEEEEcCCCCcHHHHH-HHHHHHhhhc-----cCCCceEEEEEeCCCCC-HHHHHHHHHhhcc-CCcc-----cccC
Q 042817 177 QVGIIGLYGAGGVGKTTLL-KQLNNKLCQE-----RHDFDIVIWVVVSKDLN-LEKVQEDIGKKID-MFSE-----SWKN 243 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~-----~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~-~~~~-----~~~~ 243 (922)
.-..++|.|..|+|||+|| -.+.+.. .+ ...-+.++++-+.+..+ +.+ ..+.+++-+ +... ..+.
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~-~~~~~~~~~~~~v~VyvaIGeR~rEV~e-i~~~L~e~GaL~~TvVV~AtAde 265 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQV-RINQQILSKNAVISIYVSIGQRCSNVAR-IHRLLRSYGALRYTTVMAATAAE 265 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhh-hhccccccCCCCEEEEEEeccchHHHHH-HHHHHHhcCCccceEEEEECCCC
Confidence 3457899999999999997 5566664 11 12345678888777654 333 333333322 1110 0011
Q ss_pred CChhh-----hHHHHHHHh--cCCcEEEEEccCCC
Q 042817 244 KSPVE-----KSCAIFKIL--SNKKFVLLLDDMWE 271 (922)
Q Consensus 244 ~~~~~-----~~~~l~~~l--~~kr~LlVlDdv~~ 271 (922)
....+ ....+.+++ +++.+|+|+||+-.
T Consensus 266 p~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 266 PAGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 11111 122344444 57999999999965
No 487
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=93.03 E-value=0.092 Score=49.93 Aligned_cols=24 Identities=38% Similarity=0.390 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+-|.++||.|+||||+.++++...
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L 26 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKAL 26 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHc
Confidence 357899999999999999999987
No 488
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=93.02 E-value=0.49 Score=44.17 Aligned_cols=110 Identities=11% Similarity=0.109 Sum_probs=80.6
Q ss_pred eeeecchhhHHHHHHHhhhhhhchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 042817 7 CSISFSCDAIFSHCLNCTERQVAFISELEDNLDALQAEMQKLIEVRDDVMTRVIIAEQQQMKRLNQVQGWLKRVEAVEAE 86 (922)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~a~~~~~~~~~~~~~Wl~~v~~~~~~ 86 (922)
++..|+++.+++.+...+.+...-...++.-++.|...++.+.=++++++..-. .-+..-+.=++++.+...+
T Consensus 5 L~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~-------eld~~~~ee~e~L~~~L~~ 77 (147)
T PF05659_consen 5 LVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNV-------ELDRPRQEEIERLKELLEK 77 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhh-------hcCCchhHHHHHHHHHHHH
Confidence 667888899999999999999999999999999999999999988888754211 1122225667788888889
Q ss_pred HHHHHHHHHHhhhcccccCccCCccccccchhHHHHHHHHHHHHHH
Q 042817 87 VRELQRIQTQVINNLCLGGYCSKKCISSYKFGKEVSTKLKVLADLK 132 (922)
Q Consensus 87 ~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~ 132 (922)
+++++..|..-. .+++...++++++|.++-+.+....
T Consensus 78 g~~LV~k~sk~~---------r~n~~kk~~y~~Ki~~le~~l~~f~ 114 (147)
T PF05659_consen 78 GKELVEKCSKVR---------RWNLYKKPRYARKIEELEESLRRFI 114 (147)
T ss_pred HHHHHHHhcccc---------HHHHHhhHhHHHHHHHHHHHHHHHh
Confidence 999988763221 1244455677888887777777554
No 489
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.00 E-value=0.39 Score=50.50 Aligned_cols=54 Identities=26% Similarity=0.314 Sum_probs=39.6
Q ss_pred CCCcccchhhHHHH---HHHHhccC--CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCC
Q 042817 155 IEPRIIGQESIFDD---AWRCMIEE--QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDF 209 (922)
Q Consensus 155 ~~~~~vGr~~~~~~---l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F 209 (922)
....+||.....+. ++++..+. .-+.|-|+|++|.|||+||..+.+.. -..-+|
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eL-G~dvPF 95 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIAREL-GEDVPF 95 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHh-CCCCCc
Confidence 34578997765443 55666554 34789999999999999999999998 334455
No 490
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.00 E-value=0.53 Score=54.18 Aligned_cols=97 Identities=15% Similarity=0.101 Sum_probs=55.5
Q ss_pred HHHHHHhcc--CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCccc----
Q 042817 167 DDAWRCMIE--EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSES---- 240 (922)
Q Consensus 167 ~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---- 240 (922)
..+-+.|.. ..-.++.|.|++|+|||||+.++..... ..-..+++++... +..++.+.. +.++...+.
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~ 323 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC---ANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQ 323 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhC
Confidence 344444543 2457999999999999999999888762 2234567766544 455555543 444432211
Q ss_pred ---------ccCCChhhhHHHHHHHhcC-CcEEEEEccC
Q 042817 241 ---------WKNKSPVEKSCAIFKILSN-KKFVLLLDDM 269 (922)
Q Consensus 241 ---------~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv 269 (922)
......++....+.+.+.. +.-.+|+|.+
T Consensus 324 g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 324 GLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred CcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 0112234455555555543 4446777765
No 491
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.00 E-value=0.11 Score=51.73 Aligned_cols=45 Identities=20% Similarity=0.260 Sum_probs=33.3
Q ss_pred cccchhhHHHHHHHHhcc-------------CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 158 RIIGQESIFDDAWRCMIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+=|=.+.++++.+...- +..+-|-++|++|.|||-+|++|+|+.
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt 235 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT 235 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc
Confidence 344566677776665431 234567899999999999999999986
No 492
>PRK13946 shikimate kinase; Provisional
Probab=92.99 E-value=0.09 Score=51.84 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+.|.++|++|+||||+|+.+++..
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 579999999999999999999987
No 493
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=92.98 E-value=0.13 Score=48.73 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=29.5
Q ss_pred HHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 165 IFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 165 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.++++.+.|.+ +++.++|..|+|||||...+....
T Consensus 25 g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 25 GIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp THHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 46777787754 699999999999999999988764
No 494
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.98 E-value=0.09 Score=45.90 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHH
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLN 199 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~ 199 (922)
-..++|+|+.|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999875
No 495
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=92.98 E-value=0.081 Score=50.05 Aligned_cols=23 Identities=43% Similarity=0.689 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+|.|+|.+|.||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999886
No 496
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=92.98 E-value=0.079 Score=51.11 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 042817 181 IGLYGAGGVGKTTLLKQLNNK 201 (922)
Q Consensus 181 i~I~G~gGiGKTtLa~~v~~~ 201 (922)
|+|+|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999865
No 497
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=92.96 E-value=0.26 Score=55.23 Aligned_cols=91 Identities=18% Similarity=0.216 Sum_probs=51.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhh------ccCCcccccCC-----
Q 042817 176 EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKK------IDMFSESWKNK----- 244 (922)
Q Consensus 176 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~------l~~~~~~~~~~----- 244 (922)
..-..++|+|..|+|||||++.+.... . .-..++++.-.+..++.++....+.. +...... +..
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~-~---~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~-~~~~~~r~ 230 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARNT-S---ADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATS-DQPALMRI 230 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccc-C---CCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECC-CCCHHHHH
Confidence 345789999999999999999888765 1 22345555444444555544332211 1111000 010
Q ss_pred ChhhhHHHHHHHh--cCCcEEEEEccCCC
Q 042817 245 SPVEKSCAIFKIL--SNKKFVLLLDDMWE 271 (922)
Q Consensus 245 ~~~~~~~~l~~~l--~~kr~LlVlDdv~~ 271 (922)
.....+..+.+++ +++.+||++||+-.
T Consensus 231 ~~~~~a~~iAEyfr~~g~~Vll~~Dsltr 259 (438)
T PRK07721 231 KGAYTATAIAEYFRDQGLNVMLMMDSVTR 259 (438)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeChHH
Confidence 1112223355555 57999999999854
No 498
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=92.95 E-value=0.25 Score=54.85 Aligned_cols=92 Identities=18% Similarity=0.211 Sum_probs=53.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCccc----ccCCC------h
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSES----WKNKS------P 246 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~----~~~~~------~ 246 (922)
.-..++|+|..|.|||||++.++... + ....++...-.+...+.+..+..+..-+..... ..+.. .
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~---~-~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra 230 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNA---K-ADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRA 230 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC---C-CCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHH
Confidence 44688999999999999999998875 1 122344333334466667666555442211100 00111 1
Q ss_pred hhhHHHHHHHh--cCCcEEEEEccCCCc
Q 042817 247 VEKSCAIFKIL--SNKKFVLLLDDMWEP 272 (922)
Q Consensus 247 ~~~~~~l~~~l--~~kr~LlVlDdv~~~ 272 (922)
...+..+.+++ ++++.||++||+-..
T Consensus 231 ~~~a~~iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 231 AKLATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecchHHH
Confidence 11223344444 479999999999653
No 499
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=92.95 E-value=0.81 Score=49.69 Aligned_cols=88 Identities=26% Similarity=0.234 Sum_probs=47.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCC-CCHHHHHHHHHhhccCCcccccCCChhhhHHHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKD-LNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFK 255 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 255 (922)
+-++|.++|+.|+||||-...++... .....=..+..++...- ....+-++.-++-++.+-. -..+..+....+..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~-~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~--vv~~~~el~~ai~~ 278 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARY-VMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE--VVYSPKELAEAIEA 278 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHH-HhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE--EecCHHHHHHHHHH
Confidence 36899999999999998766666665 21223345566654332 2333445555666666542 23344444433332
Q ss_pred HhcCCcEEEEEccC
Q 042817 256 ILSNKKFVLLLDDM 269 (922)
Q Consensus 256 ~l~~kr~LlVlDdv 269 (922)
+++. =+|.+|-+
T Consensus 279 -l~~~-d~ILVDTa 290 (407)
T COG1419 279 -LRDC-DVILVDTA 290 (407)
T ss_pred -hhcC-CEEEEeCC
Confidence 3333 24444544
No 500
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=92.93 E-value=0.092 Score=52.01 Aligned_cols=23 Identities=48% Similarity=0.615 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHH
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNN 200 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~ 200 (922)
..+|+|+|+.|+||||+|+.+.+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 46899999999999999998876
Done!