Query 042817
Match_columns 922
No_of_seqs 616 out of 4874
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 17:09:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042817.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042817hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 3.6E-47 1.2E-51 442.8 19.9 314 157-491 128-471 (549)
2 1vt4_I APAF-1 related killer D 100.0 3E-39 1E-43 377.0 16.6 285 158-484 129-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 6E-37 2.1E-41 396.6 26.0 310 156-491 123-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 2.1E-34 7.2E-39 341.0 23.4 304 156-488 123-449 (591)
5 4fmz_A Internalin; leucine ric 99.9 7E-25 2.4E-29 241.5 19.3 307 510-875 38-344 (347)
6 4fmz_A Internalin; leucine ric 99.9 8.4E-23 2.9E-27 224.8 23.3 293 502-852 52-344 (347)
7 3o6n_A APL1; leucine-rich repe 99.9 7.9E-23 2.7E-27 228.8 21.6 303 514-876 43-351 (390)
8 1o6v_A Internalin A; bacterial 99.9 9.1E-23 3.1E-27 233.8 22.3 317 505-875 57-386 (466)
9 2z81_A CD282 antigen, TOLL-lik 99.9 1.1E-22 3.8E-27 238.8 22.3 141 505-647 16-161 (549)
10 3v47_A TOLL-like receptor 5B a 99.9 2.5E-22 8.6E-27 229.9 23.3 348 499-875 15-406 (455)
11 4ecn_A Leucine-rich repeat pro 99.9 7.6E-23 2.6E-27 247.0 18.1 325 511-875 443-838 (876)
12 2id5_A Lingo-1, leucine rich r 99.9 5.7E-22 2E-26 228.2 23.8 290 516-874 32-330 (477)
13 1o6v_A Internalin A; bacterial 99.9 3E-22 1E-26 229.5 20.6 315 513-875 43-364 (466)
14 4eco_A Uncharacterized protein 99.9 5.7E-23 2E-27 244.2 14.8 327 511-876 201-599 (636)
15 3oja_B Anopheles plasmodium-re 99.9 3.6E-22 1.2E-26 235.9 20.0 302 514-875 49-356 (597)
16 3vq2_A TLR4, TOLL-like recepto 99.9 5.6E-22 1.9E-26 235.7 21.7 143 501-646 18-165 (606)
17 2id5_A Lingo-1, leucine rich r 99.9 8.1E-22 2.8E-26 227.0 22.4 275 511-828 51-331 (477)
18 3o6n_A APL1; leucine-rich repe 99.9 5.8E-22 2E-26 221.8 19.8 285 535-875 42-329 (390)
19 2z63_A TOLL-like receptor 4, v 99.9 1.8E-21 6.1E-26 229.7 22.5 141 502-645 15-160 (570)
20 2z7x_B TOLL-like receptor 1, v 99.9 3.8E-21 1.3E-25 224.0 23.0 351 503-875 9-479 (520)
21 4eco_A Uncharacterized protein 99.9 5.8E-22 2E-26 235.5 16.3 303 535-871 203-543 (636)
22 3bz5_A Internalin-J, INLJ; leu 99.9 5.7E-22 1.9E-26 225.2 15.4 189 512-737 38-226 (457)
23 3vq2_A TLR4, TOLL-like recepto 99.9 1.5E-21 5E-26 232.1 19.4 109 511-620 51-164 (606)
24 3t6q_A CD180 antigen; protein- 99.9 5E-21 1.7E-25 227.5 23.8 157 502-674 20-180 (606)
25 3rgz_A Protein brassinosteroid 99.9 1E-21 3.5E-26 239.0 18.2 323 512-874 196-548 (768)
26 4ecn_A Leucine-rich repeat pro 99.9 2.4E-21 8.1E-26 233.9 19.9 304 535-874 445-786 (876)
27 2ft3_A Biglycan; proteoglycan, 99.9 1.5E-21 5.1E-26 213.2 15.6 295 516-852 33-331 (332)
28 3t6q_A CD180 antigen; protein- 99.9 7.3E-21 2.5E-25 226.1 22.7 134 511-646 52-191 (606)
29 1xku_A Decorin; proteoglycan, 99.9 6.2E-21 2.1E-25 208.1 20.0 294 516-851 31-329 (330)
30 3j0a_A TOLL-like receptor 5; m 99.9 1.6E-20 5.5E-25 231.0 25.8 329 498-873 8-390 (844)
31 3rgz_A Protein brassinosteroid 99.9 1.8E-21 6.2E-26 236.8 17.1 329 512-874 174-524 (768)
32 3oja_B Anopheles plasmodium-re 99.9 3.5E-21 1.2E-25 227.6 18.8 285 535-875 48-335 (597)
33 3bz5_A Internalin-J, INLJ; leu 99.9 4E-21 1.4E-25 218.2 17.8 303 505-858 53-355 (457)
34 2z63_A TOLL-like receptor 4, v 99.9 3.1E-21 1.1E-25 227.7 16.7 345 511-874 47-528 (570)
35 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.1E-20 1.7E-24 216.4 26.4 355 499-875 36-508 (562)
36 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.9E-20 1.7E-24 216.5 25.9 116 511-633 71-194 (562)
37 3v47_A TOLL-like receptor 5B a 99.8 8.9E-21 3E-25 217.0 17.6 307 510-858 48-412 (455)
38 1ziw_A TOLL-like receptor 3; i 99.8 2.5E-20 8.5E-25 224.7 22.0 143 501-646 11-157 (680)
39 2z81_A CD282 antigen, TOLL-lik 99.8 1.6E-20 5.5E-25 220.4 18.1 133 511-645 45-183 (549)
40 2z7x_B TOLL-like receptor 1, v 99.8 4.3E-20 1.5E-24 215.1 19.1 105 511-621 40-150 (520)
41 4fcg_A Uncharacterized protein 99.8 3.6E-20 1.2E-24 201.1 16.3 90 537-628 80-169 (328)
42 1ogq_A PGIP-2, polygalacturona 99.8 1.6E-20 5.4E-25 202.8 12.3 127 517-645 51-185 (313)
43 3j0a_A TOLL-like receptor 5; m 99.8 1.9E-19 6.5E-24 221.4 22.0 319 519-875 7-373 (844)
44 1ziw_A TOLL-like receptor 3; i 99.8 2.6E-19 8.8E-24 215.8 20.5 174 519-708 7-182 (680)
45 1ogq_A PGIP-2, polygalacturona 99.8 2.1E-19 7.1E-24 194.0 15.0 131 538-682 50-185 (313)
46 4fcg_A Uncharacterized protein 99.8 7.1E-19 2.4E-23 190.9 19.0 217 560-860 79-296 (328)
47 2ft3_A Biglycan; proteoglycan, 99.8 5.2E-19 1.8E-23 192.9 16.2 214 539-789 34-251 (332)
48 1xku_A Decorin; proteoglycan, 99.8 1.4E-18 4.9E-23 189.3 19.6 246 539-860 32-281 (330)
49 2z80_A TOLL-like receptor 2, v 99.8 5.5E-19 1.9E-23 194.6 16.0 270 521-830 36-314 (353)
50 2z80_A TOLL-like receptor 2, v 99.8 1.4E-18 4.9E-23 191.2 19.0 199 535-789 28-232 (353)
51 4g8a_A TOLL-like receptor 4; l 99.8 1.5E-18 5.1E-23 207.6 20.2 142 502-646 39-185 (635)
52 2z66_A Variable lymphocyte rec 99.8 8.6E-19 2.9E-23 188.9 15.4 218 519-789 10-233 (306)
53 3zyj_A Leucine-rich repeat-con 99.8 3.4E-18 1.2E-22 194.2 18.0 221 516-790 64-290 (440)
54 3zyj_A Leucine-rich repeat-con 99.8 6.1E-18 2.1E-22 192.1 19.6 242 518-828 45-290 (440)
55 3g06_A SSPH2 (leucine-rich rep 99.8 5.3E-18 1.8E-22 198.2 19.1 254 518-852 42-295 (622)
56 3zyi_A Leucine-rich repeat-con 99.8 4.7E-18 1.6E-22 193.8 17.6 221 516-790 75-301 (452)
57 3o53_A Protein LRIM1, AGAP0063 99.7 4.5E-19 1.5E-23 191.9 5.7 262 518-857 12-278 (317)
58 4g8a_A TOLL-like receptor 4; l 99.7 2E-17 6.8E-22 197.8 19.5 337 511-874 71-577 (635)
59 3zyi_A Leucine-rich repeat-con 99.7 8.6E-18 2.9E-22 191.6 15.4 204 510-767 93-301 (452)
60 1jl5_A Outer protein YOPM; leu 99.7 7.4E-17 2.5E-21 182.9 21.5 116 516-645 91-206 (454)
61 1ozn_A Reticulon 4 receptor; N 99.7 3.1E-17 1.1E-21 174.6 16.9 218 519-790 14-236 (285)
62 1jl5_A Outer protein YOPM; leu 99.7 2E-17 7E-22 187.5 16.2 181 516-737 111-291 (454)
63 3g06_A SSPH2 (leucine-rich rep 99.7 6.4E-17 2.2E-21 189.1 20.5 249 502-829 48-296 (622)
64 2z66_A Variable lymphocyte rec 99.7 1.8E-17 6E-22 178.6 13.9 236 502-790 15-259 (306)
65 1ozn_A Reticulon 4 receptor; N 99.7 2E-17 7E-22 176.1 12.0 213 503-767 20-236 (285)
66 3oja_A Leucine-rich immune mol 99.7 5.7E-17 1.9E-21 185.8 15.6 239 535-851 31-272 (487)
67 3o53_A Protein LRIM1, AGAP0063 99.7 4.7E-17 1.6E-21 176.0 13.7 239 539-854 11-250 (317)
68 1h6u_A Internalin H; cell adhe 99.7 2.1E-16 7.1E-21 169.9 16.5 190 536-790 39-228 (308)
69 1wwl_A Monocyte differentiatio 99.7 1E-17 3.5E-22 180.8 4.6 153 515-683 42-213 (312)
70 3ogk_B Coronatine-insensitive 99.7 4.4E-17 1.5E-21 193.0 10.2 319 514-875 162-524 (592)
71 1p9a_G Platelet glycoprotein I 99.7 8.2E-16 2.8E-20 163.5 16.9 130 512-645 6-135 (290)
72 2o6q_A Variable lymphocyte rec 99.7 1E-15 3.6E-20 161.3 17.6 126 517-645 17-144 (270)
73 3oja_A Leucine-rich immune mol 99.7 8.7E-17 3E-21 184.2 9.1 237 514-828 32-273 (487)
74 1h6u_A Internalin H; cell adhe 99.7 2.5E-16 8.5E-21 169.3 12.1 196 558-833 37-232 (308)
75 2xwt_C Thyrotropin receptor; s 99.7 6E-16 2E-20 160.0 14.4 112 528-644 23-140 (239)
76 2xwt_C Thyrotropin receptor; s 99.7 5.3E-16 1.8E-20 160.3 13.4 82 563-645 32-116 (239)
77 3rfs_A Internalin B, repeat mo 99.6 3.2E-16 1.1E-20 165.4 11.6 119 522-645 25-144 (272)
78 1z7x_W Ribonuclease inhibitor; 99.6 4E-17 1.4E-21 187.0 4.5 313 515-852 55-409 (461)
79 3rfs_A Internalin B, repeat mo 99.6 7.4E-16 2.5E-20 162.6 13.6 132 510-645 35-168 (272)
80 1z7x_W Ribonuclease inhibitor; 99.6 1E-16 3.5E-21 183.5 6.8 259 516-789 3-294 (461)
81 2z62_A TOLL-like receptor 4, v 99.6 1.9E-15 6.3E-20 160.0 15.6 105 539-645 29-135 (276)
82 2o6q_A Variable lymphocyte rec 99.6 3.4E-15 1.2E-19 157.3 17.2 102 539-645 17-120 (270)
83 2ast_B S-phase kinase-associat 99.6 3.9E-16 1.3E-20 170.6 9.9 81 562-644 70-152 (336)
84 3ogk_B Coronatine-insensitive 99.6 6.3E-16 2.2E-20 183.0 11.5 308 514-857 190-528 (592)
85 2z62_A TOLL-like receptor 4, v 99.6 4.6E-15 1.6E-19 157.0 15.5 140 503-646 16-161 (276)
86 1w5s_A Origin recognition comp 99.6 3.9E-15 1.3E-19 167.6 15.5 307 157-480 22-387 (412)
87 4ay9_X Follicle-stimulating ho 99.6 6.9E-15 2.4E-19 161.3 17.0 98 724-849 155-254 (350)
88 2p1m_B Transport inhibitor res 99.6 3.9E-16 1.3E-20 184.9 7.5 320 515-876 155-518 (594)
89 1wwl_A Monocyte differentiatio 99.6 1.5E-16 5.2E-21 171.5 3.1 243 536-851 41-306 (312)
90 2qen_A Walker-type ATPase; unk 99.6 1.2E-14 3.9E-19 159.8 16.5 292 156-484 11-348 (350)
91 1p9a_G Platelet glycoprotein I 99.6 1.6E-14 5.4E-19 153.6 16.1 197 535-789 7-205 (290)
92 1h6t_A Internalin B; cell adhe 99.6 6.4E-15 2.2E-19 156.8 11.5 182 522-790 30-211 (291)
93 2fna_A Conserved hypothetical 99.6 3.5E-14 1.2E-18 156.4 17.2 289 156-483 12-355 (357)
94 2ca6_A RAN GTPase-activating p 99.5 1.6E-15 5.5E-20 169.0 5.3 139 535-683 29-199 (386)
95 4ay9_X Follicle-stimulating ho 99.5 2.7E-14 9.1E-19 156.6 14.8 239 520-788 13-255 (350)
96 2ast_B S-phase kinase-associat 99.5 2.8E-15 9.7E-20 163.7 6.5 249 563-857 48-308 (336)
97 2ca6_A RAN GTPase-activating p 99.5 2.2E-15 7.6E-20 167.9 5.3 220 549-790 20-285 (386)
98 1m9s_A Internalin B; cell inva 99.5 9.9E-15 3.4E-19 170.4 10.0 117 521-645 26-142 (605)
99 2p1m_B Transport inhibitor res 99.5 3.6E-15 1.2E-19 176.6 5.3 324 515-875 104-467 (594)
100 3m19_A Variable lymphocyte rec 99.5 1.2E-13 4.2E-18 143.6 16.0 126 517-645 15-142 (251)
101 4glp_A Monocyte differentiatio 99.5 6.1E-15 2.1E-19 158.8 5.9 83 562-645 91-180 (310)
102 1h6t_A Internalin B; cell adhe 99.5 5.4E-14 1.8E-18 149.6 12.7 149 511-682 41-189 (291)
103 4ezg_A Putative uncharacterize 99.5 8.7E-14 3E-18 138.8 13.0 150 513-682 41-192 (197)
104 3goz_A Leucine-rich repeat-con 99.5 4.7E-14 1.6E-18 155.4 12.0 258 522-828 4-295 (362)
105 3m19_A Variable lymphocyte rec 99.5 2.5E-13 8.5E-18 141.3 14.3 165 502-682 22-190 (251)
106 1m9s_A Internalin B; cell inva 99.5 1.2E-13 4.1E-18 161.3 12.8 171 511-708 38-208 (605)
107 3qfl_A MLA10; coiled-coil, (CC 99.5 1.4E-13 4.9E-18 121.6 9.2 82 11-99 1-83 (115)
108 3e6j_A Variable lymphocyte rec 99.5 5E-13 1.7E-17 136.7 14.3 138 505-645 30-170 (229)
109 3goz_A Leucine-rich repeat-con 99.4 1.6E-13 5.4E-18 151.2 10.5 232 516-790 22-295 (362)
110 4glp_A Monocyte differentiatio 99.4 2.3E-13 7.8E-18 146.5 10.8 128 517-645 65-208 (310)
111 1xeu_A Internalin C; cellular 99.4 6.1E-13 2.1E-17 139.1 13.2 152 508-683 33-184 (263)
112 2v9t_B SLIT homolog 2 protein 99.4 3.9E-13 1.3E-17 136.5 11.4 123 520-645 15-139 (220)
113 4ezg_A Putative uncharacterize 99.4 7.7E-13 2.6E-17 131.9 12.9 138 503-645 53-192 (197)
114 2v9t_B SLIT homolog 2 protein 99.4 1.3E-12 4.5E-17 132.6 13.9 141 502-645 19-163 (220)
115 2v70_A SLIT-2, SLIT homolog 2 99.4 1.9E-12 6.4E-17 131.4 13.4 126 518-645 34-164 (220)
116 3cvr_A Invasion plasmid antige 99.4 3.1E-12 1.1E-16 147.5 17.0 112 517-645 60-171 (571)
117 2v70_A SLIT-2, SLIT homolog 2 99.4 1.1E-12 3.8E-17 133.1 11.6 148 519-682 14-164 (220)
118 1xeu_A Internalin C; cellular 99.4 2E-13 6.7E-18 142.8 6.0 144 514-681 17-160 (263)
119 2o6s_A Variable lymphocyte rec 99.4 2.8E-12 9.5E-17 129.1 14.1 129 515-645 27-159 (208)
120 2ell_A Acidic leucine-rich nuc 99.4 1E-12 3.4E-17 127.4 9.8 127 516-646 24-159 (168)
121 3e6j_A Variable lymphocyte rec 99.4 1.5E-12 5.1E-17 133.1 11.2 147 518-681 21-169 (229)
122 1a9n_A U2A', U2A'; complex (nu 99.4 7.4E-13 2.5E-17 129.3 8.6 127 515-645 18-151 (176)
123 2qby_B CDC6 homolog 3, cell di 99.4 1.7E-11 5.7E-16 136.3 20.4 303 157-480 20-355 (384)
124 2je0_A Acidic leucine-rich nuc 99.4 1.1E-12 3.7E-17 124.3 8.2 123 516-642 17-148 (149)
125 2xot_A Amphoterin-induced prot 99.3 3.1E-12 1.1E-16 140.7 12.8 163 503-681 27-199 (361)
126 2v1u_A Cell division control p 99.3 1.6E-11 5.6E-16 136.6 18.8 301 157-480 19-367 (387)
127 3cvr_A Invasion plasmid antige 99.3 4.3E-12 1.5E-16 146.4 14.0 186 538-794 59-245 (571)
128 2o6s_A Variable lymphocyte rec 99.3 4.7E-12 1.6E-16 127.5 12.3 124 519-645 10-135 (208)
129 2xot_A Amphoterin-induced prot 99.3 6.4E-12 2.2E-16 138.1 12.0 124 519-645 21-147 (361)
130 1fnn_A CDC6P, cell division co 99.3 7.1E-11 2.4E-15 131.5 20.1 289 157-469 17-351 (389)
131 2qby_A CDC6 homolog 1, cell di 99.3 3.3E-11 1.1E-15 134.0 15.7 303 157-480 20-364 (386)
132 1a9n_A U2A', U2A'; complex (nu 99.3 1.1E-11 3.8E-16 120.9 10.2 144 528-685 9-154 (176)
133 2wfh_A SLIT homolog 2 protein 99.3 2.9E-11 9.9E-16 119.7 12.6 123 519-645 13-137 (193)
134 2o6r_A Variable lymphocyte rec 99.3 2.8E-11 9.4E-16 118.3 12.2 125 518-645 9-135 (177)
135 2ell_A Acidic leucine-rich nuc 99.2 1.6E-11 5.3E-16 118.9 10.1 134 535-682 21-158 (168)
136 1w8a_A SLIT protein; signaling 99.2 2.4E-11 8.4E-16 120.3 11.1 124 519-645 11-137 (192)
137 2je0_A Acidic leucine-rich nuc 99.2 1.2E-11 3.9E-16 117.2 7.5 129 536-678 15-147 (149)
138 1dce_A Protein (RAB geranylger 99.2 1E-11 3.5E-16 144.1 6.9 119 518-646 425-545 (567)
139 1dce_A Protein (RAB geranylger 99.1 8E-11 2.7E-15 136.6 11.1 121 517-641 442-567 (567)
140 1njg_A DNA polymerase III subu 99.1 3.3E-10 1.1E-14 117.0 14.5 196 157-363 23-230 (250)
141 2wfh_A SLIT homolog 2 protein 99.1 1.2E-10 4.3E-15 115.1 9.8 123 541-681 13-136 (193)
142 4b8c_D Glucose-repressible alc 99.1 6.7E-11 2.3E-15 141.7 8.9 108 535-646 221-328 (727)
143 1w8a_A SLIT protein; signaling 99.1 1E-10 3.6E-15 115.7 8.2 123 541-681 11-136 (192)
144 1ds9_A Outer arm dynein; leuci 99.1 9.2E-12 3.1E-16 124.1 0.2 107 534-645 44-151 (198)
145 2chg_A Replication factor C sm 99.1 7E-10 2.4E-14 112.7 13.8 184 157-361 17-204 (226)
146 4b8c_D Glucose-repressible alc 99.1 1.1E-10 3.7E-15 139.9 7.6 151 516-684 173-329 (727)
147 2o6r_A Variable lymphocyte rec 99.0 7.3E-10 2.5E-14 108.1 11.4 121 504-626 17-141 (177)
148 2r9u_A Variable lymphocyte rec 99.0 7E-10 2.4E-14 107.6 10.0 100 541-645 15-116 (174)
149 3g39_A Variable lymphocyte rec 99.0 9.5E-10 3.2E-14 106.3 9.6 101 540-645 11-113 (170)
150 2r9u_A Variable lymphocyte rec 99.0 9.7E-10 3.3E-14 106.6 9.7 107 518-627 14-122 (174)
151 1ds9_A Outer arm dynein; leuci 99.0 2E-11 6.8E-16 121.7 -2.6 127 511-640 43-180 (198)
152 3g39_A Variable lymphocyte rec 99.0 1.1E-09 3.9E-14 105.7 9.6 103 517-621 10-114 (170)
153 3sb4_A Hypothetical leucine ri 98.9 2E-09 6.8E-14 116.6 10.9 285 514-847 23-327 (329)
154 3sb4_A Hypothetical leucine ri 98.9 5.1E-09 1.7E-13 113.3 12.0 262 515-824 48-328 (329)
155 1sxj_B Activator 1 37 kDa subu 98.9 4.3E-09 1.5E-13 113.7 10.7 183 157-361 21-210 (323)
156 1hqc_A RUVB; extended AAA-ATPa 98.8 1E-07 3.5E-12 102.9 19.9 271 157-468 12-324 (324)
157 4fdw_A Leucine rich hypothetic 98.7 2.3E-07 7.8E-12 102.6 19.0 99 539-643 136-235 (401)
158 1iqp_A RFCS; clamp loader, ext 98.7 2.6E-08 8.9E-13 107.7 10.3 178 157-362 25-213 (327)
159 2ifg_A High affinity nerve gro 98.6 8.5E-08 2.9E-12 104.6 11.1 99 542-645 12-114 (347)
160 4fdw_A Leucine rich hypothetic 98.6 7.3E-07 2.5E-11 98.6 17.4 119 517-643 136-257 (401)
161 2ifg_A High affinity nerve gro 98.6 8.6E-08 3E-12 104.5 9.5 101 520-621 12-115 (347)
162 3te6_A Regulatory protein SIR3 98.6 3.9E-07 1.3E-11 95.8 13.8 167 158-328 21-211 (318)
163 2chq_A Replication factor C sm 98.6 3.2E-07 1.1E-11 98.6 12.6 179 157-360 17-203 (319)
164 1jr3_A DNA polymerase III subu 98.5 8.2E-07 2.8E-11 97.8 13.7 193 157-361 16-221 (373)
165 3un9_A NLR family member X1; l 98.5 5.5E-08 1.9E-12 106.5 3.8 126 517-645 73-222 (372)
166 1jbk_A CLPB protein; beta barr 98.4 1.4E-07 5E-12 92.9 5.5 46 157-202 22-67 (195)
167 3un9_A NLR family member X1; l 98.4 1.7E-07 5.7E-12 102.6 4.2 127 516-645 101-250 (372)
168 3h4m_A Proteasome-activating n 98.3 1.3E-06 4.4E-11 92.2 9.9 175 157-358 17-228 (285)
169 3bos_A Putative DNA replicatio 98.3 5.2E-07 1.8E-11 92.5 6.5 172 157-361 28-217 (242)
170 1sxj_D Activator 1 41 kDa subu 98.3 2.4E-06 8.1E-11 93.3 11.7 193 157-360 37-234 (353)
171 1sxj_A Activator 1 95 kDa subu 98.3 5.9E-06 2E-10 94.6 14.3 187 157-361 39-253 (516)
172 1d2n_A N-ethylmaleimide-sensit 98.2 2.4E-05 8.2E-10 81.6 16.8 196 157-383 33-264 (272)
173 2qz4_A Paraplegin; AAA+, SPG7, 98.2 1E-05 3.5E-10 84.0 13.8 174 157-355 6-215 (262)
174 2z4s_A Chromosomal replication 98.2 4.8E-06 1.7E-10 93.0 11.2 180 158-358 106-303 (440)
175 1sxj_E Activator 1 40 kDa subu 98.1 4.2E-06 1.5E-10 91.3 9.4 195 157-361 14-237 (354)
176 3pvs_A Replication-associated 98.1 3.8E-05 1.3E-09 85.6 16.6 174 157-359 26-213 (447)
177 3syl_A Protein CBBX; photosynt 98.1 6.1E-06 2.1E-10 88.1 9.5 151 158-329 32-218 (309)
178 3e4g_A ATP synthase subunit S, 98.1 1.4E-06 4.8E-11 82.7 3.9 39 818-856 115-154 (176)
179 4fs7_A Uncharacterized protein 98.1 1.3E-05 4.3E-10 88.8 12.3 121 695-849 251-374 (394)
180 3e4g_A ATP synthase subunit S, 98.1 1.3E-06 4.6E-11 82.8 3.6 101 722-844 60-170 (176)
181 1xwi_A SKD1 protein; VPS4B, AA 98.1 0.00013 4.6E-09 77.7 19.5 179 157-361 12-223 (322)
182 3u61_B DNA polymerase accessor 98.0 1.9E-05 6.6E-10 84.8 11.9 175 157-358 26-213 (324)
183 2ra8_A Uncharacterized protein 98.0 8.3E-06 2.8E-10 88.3 8.9 12 755-766 306-317 (362)
184 4fs7_A Uncharacterized protein 98.0 2.3E-05 7.9E-10 86.7 12.7 283 535-874 68-376 (394)
185 3d8b_A Fidgetin-like protein 1 98.0 4.6E-05 1.6E-09 82.7 14.7 178 157-361 84-295 (357)
186 1sxj_C Activator 1 40 kDa subu 98.0 3.2E-05 1.1E-09 83.6 12.5 179 158-358 26-209 (340)
187 1a5t_A Delta prime, HOLB; zinc 98.0 7.6E-05 2.6E-09 80.2 14.9 169 163-361 8-205 (334)
188 2ra8_A Uncharacterized protein 98.0 1.6E-05 5.5E-10 86.1 9.6 86 556-645 166-263 (362)
189 3eie_A Vacuolar protein sortin 98.0 8.1E-05 2.8E-09 79.6 15.0 177 157-360 18-227 (322)
190 3pfi_A Holliday junction ATP-d 98.0 3.3E-05 1.1E-09 83.5 12.1 170 157-360 29-226 (338)
191 3vfd_A Spastin; ATPase, microt 98.0 0.00012 4E-09 80.7 16.5 178 157-360 115-325 (389)
192 3uk6_A RUVB-like 2; hexameric 97.9 1.9E-05 6.4E-10 86.6 9.9 46 157-202 44-94 (368)
193 3cf0_A Transitional endoplasmi 97.9 0.00014 4.7E-09 77.0 16.2 173 157-356 15-223 (301)
194 3b9p_A CG5977-PA, isoform A; A 97.9 0.00016 5.4E-09 76.4 16.5 177 157-360 21-232 (297)
195 2qp9_X Vacuolar protein sortin 97.9 0.00017 5.8E-09 78.1 16.4 178 157-360 51-260 (355)
196 2zan_A Vacuolar protein sortin 97.9 0.00035 1.2E-08 78.1 18.8 178 157-360 134-344 (444)
197 2p65_A Hypothetical protein PF 97.9 2.4E-05 8.3E-10 76.2 8.3 46 157-202 22-67 (187)
198 3rw6_A Nuclear RNA export fact 97.8 5E-06 1.7E-10 85.3 2.6 81 559-641 167-258 (267)
199 1l8q_A Chromosomal replication 97.8 6E-05 2.1E-09 80.8 10.6 165 166-356 23-203 (324)
200 4gt6_A Cell surface protein; l 97.8 0.00048 1.6E-08 76.0 17.9 100 539-642 65-168 (394)
201 3pxg_A Negative regulator of g 97.8 0.00015 5.1E-09 81.7 13.9 149 158-330 181-340 (468)
202 2gno_A DNA polymerase III, gam 97.8 7.1E-05 2.4E-09 78.8 10.3 147 161-328 1-152 (305)
203 4b4t_J 26S protease regulatory 97.8 0.00018 6.2E-09 77.5 13.2 169 158-354 149-354 (405)
204 2r62_A Cell division protease 97.7 4.7E-05 1.6E-09 79.2 8.1 151 157-330 11-198 (268)
205 4b4t_L 26S protease subunit RP 97.7 0.00033 1.1E-08 76.8 14.1 169 158-354 182-387 (437)
206 1io0_A Tropomodulin; LRR prote 97.6 3.7E-05 1.3E-09 74.8 5.4 109 535-645 33-162 (185)
207 1qvr_A CLPB protein; coiled co 97.6 0.00014 4.8E-09 88.6 11.2 152 158-327 171-344 (854)
208 3n70_A Transport activator; si 97.6 4.7E-05 1.6E-09 70.8 5.5 45 158-202 2-48 (145)
209 4b4t_I 26S protease regulatory 97.6 0.00094 3.2E-08 72.2 16.0 169 158-354 183-388 (437)
210 3rw6_A Nuclear RNA export fact 97.6 3.4E-05 1.2E-09 79.1 4.6 80 535-616 167-258 (267)
211 3ec2_A DNA replication protein 97.6 4.3E-05 1.5E-09 74.1 4.7 117 162-298 19-143 (180)
212 4b4t_H 26S protease regulatory 97.6 0.00074 2.5E-08 73.8 14.8 170 158-354 210-415 (467)
213 4b4t_M 26S protease regulatory 97.6 0.00034 1.2E-08 76.6 12.2 169 158-354 182-387 (434)
214 1io0_A Tropomodulin; LRR prote 97.6 4.2E-05 1.4E-09 74.4 4.3 106 515-621 35-163 (185)
215 1lv7_A FTSH; alpha/beta domain 97.5 0.001 3.6E-08 68.4 14.6 172 157-355 12-219 (257)
216 3hu3_A Transitional endoplasmi 97.5 0.00072 2.5E-08 76.0 13.8 174 158-358 205-412 (489)
217 3pxi_A Negative regulator of g 97.5 0.00059 2E-08 82.1 13.8 148 158-329 181-339 (758)
218 4gt6_A Cell surface protein; l 97.5 0.0008 2.7E-08 74.2 13.9 120 517-643 65-191 (394)
219 2ce7_A Cell division protein F 97.5 0.00077 2.6E-08 75.1 13.2 171 157-354 16-221 (476)
220 2w58_A DNAI, primosome compone 97.4 0.00032 1.1E-08 69.2 8.6 113 164-297 36-158 (202)
221 4b4t_K 26S protease regulatory 97.4 0.0017 5.7E-08 71.1 14.9 170 158-354 173-379 (428)
222 4fcw_A Chaperone protein CLPB; 97.4 0.00036 1.2E-08 74.2 9.3 62 157-221 17-87 (311)
223 1r6b_X CLPA protein; AAA+, N-t 97.3 0.0014 4.6E-08 79.1 14.4 154 158-328 187-362 (758)
224 1ofh_A ATP-dependent HSL prote 97.3 0.00092 3.2E-08 70.9 11.4 46 157-202 15-74 (310)
225 1in4_A RUVB, holliday junction 97.3 0.00088 3E-08 71.8 11.0 169 157-359 25-221 (334)
226 4h09_A Hypothetical leucine ri 97.2 0.0075 2.6E-07 65.9 17.9 122 515-644 45-168 (379)
227 2kjq_A DNAA-related protein; s 97.2 0.00012 4.1E-09 68.2 2.6 39 177-218 35-73 (149)
228 1ojl_A Transcriptional regulat 96.9 0.0014 4.6E-08 69.2 7.8 46 157-202 2-49 (304)
229 2x8a_A Nuclear valosin-contain 96.9 0.012 4.2E-07 60.7 14.9 149 157-329 10-192 (274)
230 2dhr_A FTSH; AAA+ protein, hex 96.9 0.0096 3.3E-07 66.7 14.7 167 157-354 31-236 (499)
231 3cf2_A TER ATPase, transitiona 96.9 0.0019 6.4E-08 76.4 8.9 170 158-354 205-407 (806)
232 2c9o_A RUVB-like 1; hexameric 96.8 0.0043 1.5E-07 69.5 11.5 46 157-202 37-87 (456)
233 3m6a_A ATP-dependent protease 96.8 0.0063 2.2E-07 69.6 12.9 46 157-202 81-132 (543)
234 3pxi_A Negative regulator of g 96.8 0.0014 4.9E-08 78.7 7.7 60 157-219 491-559 (758)
235 1ypw_A Transitional endoplasmi 96.8 0.0038 1.3E-07 75.0 10.8 150 158-331 205-388 (806)
236 1iy2_A ATP-dependent metallopr 96.7 0.0071 2.4E-07 62.8 11.0 170 157-354 40-245 (278)
237 1ixz_A ATP-dependent metallopr 96.7 0.013 4.4E-07 59.9 12.7 169 157-353 16-220 (254)
238 2vhj_A Ntpase P4, P4; non- hyd 96.5 0.0016 5.6E-08 67.6 4.1 68 179-271 124-193 (331)
239 2cvh_A DNA repair and recombin 96.4 0.0083 2.8E-07 59.8 9.1 87 178-271 20-116 (220)
240 3t15_A Ribulose bisphosphate c 96.4 0.0031 1.1E-07 66.1 5.9 25 178-202 36-60 (293)
241 3hr8_A Protein RECA; alpha and 96.3 0.0095 3.3E-07 63.5 9.3 86 178-271 61-150 (356)
242 1n0w_A DNA repair protein RAD5 96.3 0.011 3.6E-07 60.0 9.1 92 178-271 24-130 (243)
243 1g5t_A COB(I)alamin adenosyltr 96.3 0.0032 1.1E-07 60.4 4.6 118 179-299 29-164 (196)
244 2qgz_A Helicase loader, putati 96.2 0.0061 2.1E-07 64.2 6.7 41 162-202 133-176 (308)
245 2z43_A DNA repair and recombin 96.1 0.021 7.3E-07 60.6 10.7 92 178-270 107-213 (324)
246 1qvr_A CLPB protein; coiled co 96.1 0.0096 3.3E-07 72.4 9.0 45 158-202 559-612 (854)
247 1r6b_X CLPA protein; AAA+, N-t 96.1 0.0074 2.5E-07 72.6 7.5 57 157-219 458-523 (758)
248 1v5w_A DMC1, meiotic recombina 96.0 0.027 9.3E-07 60.2 11.2 92 177-270 121-229 (343)
249 2b8t_A Thymidine kinase; deoxy 96.0 0.003 1E-07 62.6 3.4 114 177-299 11-127 (223)
250 2zr9_A Protein RECA, recombina 96.0 0.017 5.8E-07 61.8 9.4 86 178-271 61-150 (349)
251 3io5_A Recombination and repai 96.0 0.029 1E-06 57.9 10.5 87 180-272 30-123 (333)
252 1xp8_A RECA protein, recombina 95.9 0.022 7.4E-07 61.2 9.5 86 178-271 74-163 (366)
253 1u94_A RECA protein, recombina 95.9 0.018 6.1E-07 61.7 8.7 86 177-270 62-151 (356)
254 3ice_A Transcription terminati 95.8 0.0066 2.3E-07 64.3 4.8 52 168-220 163-215 (422)
255 3co5_A Putative two-component 95.7 0.0028 9.7E-08 58.3 1.6 45 158-202 5-51 (143)
256 4h09_A Hypothetical leucine ri 95.7 0.031 1.1E-06 60.9 10.0 103 535-642 237-341 (379)
257 1rz3_A Hypothetical protein rb 95.7 0.011 3.7E-07 58.0 5.7 41 162-202 3-46 (201)
258 2bjv_A PSP operon transcriptio 95.6 0.012 3.9E-07 60.7 5.6 60 158-220 7-68 (265)
259 2i1q_A DNA repair and recombin 95.4 0.033 1.1E-06 59.2 8.7 93 177-270 97-214 (322)
260 2w0m_A SSO2452; RECA, SSPF, un 95.4 0.035 1.2E-06 55.6 8.4 46 179-229 24-69 (235)
261 3dm5_A SRP54, signal recogniti 95.4 0.072 2.5E-06 58.3 11.2 26 177-202 99-124 (443)
262 3c8u_A Fructokinase; YP_612366 95.4 0.013 4.6E-07 57.7 5.1 39 164-202 6-46 (208)
263 2orw_A Thymidine kinase; TMTK, 95.3 0.0023 8E-08 61.7 -0.8 24 179-202 4-27 (184)
264 1jr3_D DNA polymerase III, del 95.2 0.064 2.2E-06 57.5 10.2 162 171-359 11-183 (343)
265 4a74_A DNA repair and recombin 95.1 0.072 2.4E-06 53.2 9.8 47 178-224 25-74 (231)
266 3lda_A DNA repair protein RAD5 95.1 0.078 2.7E-06 57.6 10.5 91 178-269 178-282 (400)
267 3kb2_A SPBC2 prophage-derived 95.1 0.013 4.3E-07 55.7 3.7 24 179-202 2-25 (173)
268 1qhx_A CPT, protein (chloramph 95.0 0.014 4.6E-07 55.9 3.6 24 179-202 4-27 (178)
269 2ga8_A Hypothetical 39.9 kDa p 95.0 0.027 9.3E-07 59.4 6.1 43 160-202 2-48 (359)
270 3kl4_A SRP54, signal recogniti 94.9 0.12 4E-06 56.6 11.2 26 177-202 96-121 (433)
271 2r44_A Uncharacterized protein 94.9 0.019 6.4E-07 61.3 4.9 44 157-202 27-70 (331)
272 3cf2_A TER ATPase, transitiona 94.9 0.035 1.2E-06 65.6 7.5 169 157-353 477-682 (806)
273 2px0_A Flagellar biosynthesis 94.9 0.081 2.8E-06 55.1 9.5 87 177-269 104-191 (296)
274 1pzn_A RAD51, DNA repair and r 94.9 0.057 2E-06 57.8 8.6 94 177-271 130-242 (349)
275 3sr0_A Adenylate kinase; phosp 94.9 0.044 1.5E-06 53.6 7.0 23 180-202 2-24 (206)
276 3vaa_A Shikimate kinase, SK; s 94.8 0.018 6.2E-07 56.3 3.9 26 177-202 24-49 (199)
277 3lw7_A Adenylate kinase relate 94.7 0.017 5.8E-07 55.0 3.5 23 179-202 2-24 (179)
278 3bh0_A DNAB-like replicative h 94.7 0.1 3.6E-06 54.9 9.9 51 178-233 68-118 (315)
279 1j8m_F SRP54, signal recogniti 94.6 0.093 3.2E-06 54.6 9.2 89 178-269 98-189 (297)
280 1sky_E F1-ATPase, F1-ATP synth 94.6 0.059 2E-06 59.1 7.9 91 179-271 152-256 (473)
281 3nbx_X ATPase RAVA; AAA+ ATPas 94.5 0.02 7E-07 64.1 4.1 44 157-202 22-65 (500)
282 3hws_A ATP-dependent CLP prote 94.5 0.031 1.1E-06 60.5 5.5 45 158-202 16-75 (363)
283 3rfe_A Platelet glycoprotein I 94.5 0.041 1.4E-06 49.4 5.3 53 590-645 12-66 (130)
284 3trf_A Shikimate kinase, SK; a 94.5 0.021 7.3E-07 55.0 3.7 25 178-202 5-29 (185)
285 1zp6_A Hypothetical protein AT 94.5 0.021 7E-07 55.4 3.5 25 178-202 9-33 (191)
286 2hf9_A Probable hydrogenase ni 94.5 0.038 1.3E-06 55.1 5.6 40 163-202 23-62 (226)
287 1kgd_A CASK, peripheral plasma 94.5 0.022 7.5E-07 54.7 3.6 24 179-202 6-29 (180)
288 1ly1_A Polynucleotide kinase; 94.4 0.022 7.7E-07 54.4 3.7 22 179-200 3-24 (181)
289 3e70_C DPA, signal recognition 94.4 0.18 6.2E-06 53.1 11.0 26 177-202 128-153 (328)
290 1kag_A SKI, shikimate kinase I 94.4 0.019 6.4E-07 54.6 3.1 24 179-202 5-28 (173)
291 1zuh_A Shikimate kinase; alpha 94.4 0.023 8E-07 53.7 3.7 26 177-202 6-31 (168)
292 1ypw_A Transitional endoplasmi 94.4 0.0061 2.1E-07 73.2 -0.6 46 157-202 477-535 (806)
293 1nks_A Adenylate kinase; therm 94.4 0.025 8.7E-07 54.8 4.0 24 179-202 2-25 (194)
294 3uie_A Adenylyl-sulfate kinase 94.3 0.029 9.8E-07 54.9 4.3 27 176-202 23-49 (200)
295 2ck3_D ATP synthase subunit be 94.3 0.099 3.4E-06 57.2 8.7 102 168-271 142-264 (482)
296 1um8_A ATP-dependent CLP prote 94.3 0.039 1.3E-06 60.0 5.6 46 157-202 21-96 (376)
297 1odf_A YGR205W, hypothetical 3 94.3 0.045 1.5E-06 56.8 5.8 27 176-202 29-55 (290)
298 2ffh_A Protein (FFH); SRP54, s 94.3 0.22 7.5E-06 54.3 11.4 26 177-202 97-122 (425)
299 1vma_A Cell division protein F 94.2 0.12 4.1E-06 53.9 8.9 89 177-269 103-195 (306)
300 2dr3_A UPF0273 protein PH0284; 94.2 0.11 3.8E-06 52.4 8.6 47 179-230 24-70 (247)
301 2wsm_A Hydrogenase expression/ 94.2 0.037 1.3E-06 54.9 4.8 42 161-202 13-54 (221)
302 3t61_A Gluconokinase; PSI-biol 94.2 0.022 7.7E-07 55.7 3.1 25 178-202 18-42 (202)
303 2yvu_A Probable adenylyl-sulfa 94.1 0.033 1.1E-06 53.7 4.2 26 177-202 12-37 (186)
304 4eun_A Thermoresistant glucoki 94.1 0.029 9.8E-07 54.9 3.8 26 177-202 28-53 (200)
305 1kht_A Adenylate kinase; phosp 94.1 0.029 1E-06 54.2 3.8 24 179-202 4-27 (192)
306 1ex7_A Guanylate kinase; subst 94.1 0.02 6.9E-07 54.9 2.5 24 179-202 2-25 (186)
307 3jvv_A Twitching mobility prot 94.1 0.039 1.3E-06 59.0 5.0 114 176-301 121-234 (356)
308 1knq_A Gluconate kinase; ALFA/ 94.1 0.032 1.1E-06 53.2 3.8 25 178-202 8-32 (175)
309 3iij_A Coilin-interacting nucl 94.0 0.027 9.2E-07 54.0 3.3 25 178-202 11-35 (180)
310 2rhm_A Putative kinase; P-loop 94.0 0.033 1.1E-06 53.9 3.9 25 178-202 5-29 (193)
311 2ze6_A Isopentenyl transferase 94.0 0.033 1.1E-06 56.7 4.0 24 179-202 2-25 (253)
312 1via_A Shikimate kinase; struc 94.0 0.027 9.3E-07 53.6 3.2 24 179-202 5-28 (175)
313 1fx0_B ATP synthase beta chain 94.0 0.17 5.8E-06 55.6 9.7 101 169-271 155-277 (498)
314 1g8p_A Magnesium-chelatase 38 94.0 0.022 7.5E-07 61.3 2.8 45 158-202 25-69 (350)
315 2bdt_A BH3686; alpha-beta prot 93.9 0.033 1.1E-06 53.9 3.7 23 179-201 3-25 (189)
316 3tr0_A Guanylate kinase, GMP k 93.9 0.032 1.1E-06 54.7 3.5 24 179-202 8-31 (205)
317 2jaq_A Deoxyguanosine kinase; 93.8 0.035 1.2E-06 54.3 3.8 23 180-202 2-24 (205)
318 1ye8_A Protein THEP1, hypothet 93.8 0.038 1.3E-06 52.8 3.8 23 180-202 2-24 (178)
319 3a00_A Guanylate kinase, GMP k 93.8 0.027 9.4E-07 54.3 2.8 24 179-202 2-25 (186)
320 1y63_A LMAJ004144AAA protein; 93.8 0.035 1.2E-06 53.4 3.6 24 178-201 10-33 (184)
321 2c95_A Adenylate kinase 1; tra 93.8 0.037 1.3E-06 53.7 3.8 26 177-202 8-33 (196)
322 2plr_A DTMP kinase, probable t 93.8 0.085 2.9E-06 51.8 6.5 24 179-202 5-28 (213)
323 3tau_A Guanylate kinase, GMP k 93.8 0.034 1.2E-06 54.7 3.5 26 177-202 7-32 (208)
324 2xxa_A Signal recognition part 93.7 0.38 1.3E-05 52.9 12.1 40 177-218 99-138 (433)
325 2qor_A Guanylate kinase; phosp 93.7 0.032 1.1E-06 54.7 3.2 25 178-202 12-36 (204)
326 2iyv_A Shikimate kinase, SK; t 93.7 0.029 9.9E-07 53.9 2.9 24 179-202 3-26 (184)
327 1tev_A UMP-CMP kinase; ploop, 93.7 0.041 1.4E-06 53.3 4.0 24 179-202 4-27 (196)
328 1cke_A CK, MSSA, protein (cyti 93.7 0.039 1.3E-06 55.1 3.8 24 179-202 6-29 (227)
329 3cm0_A Adenylate kinase; ATP-b 93.6 0.044 1.5E-06 52.7 4.0 24 179-202 5-28 (186)
330 1tue_A Replication protein E1; 93.6 0.053 1.8E-06 52.2 4.4 37 166-202 45-82 (212)
331 2if2_A Dephospho-COA kinase; a 93.6 0.037 1.3E-06 54.2 3.5 22 179-200 2-23 (204)
332 1g41_A Heat shock protein HSLU 93.6 0.048 1.6E-06 59.8 4.7 46 157-202 15-74 (444)
333 1ukz_A Uridylate kinase; trans 93.6 0.045 1.5E-06 53.5 4.1 26 177-202 14-39 (203)
334 1gvn_B Zeta; postsegregational 93.6 0.061 2.1E-06 55.8 5.3 26 177-202 32-57 (287)
335 3umf_A Adenylate kinase; rossm 93.6 0.047 1.6E-06 53.8 4.1 26 177-202 28-53 (217)
336 2bwj_A Adenylate kinase 5; pho 93.6 0.041 1.4E-06 53.6 3.7 24 179-202 13-36 (199)
337 4gp7_A Metallophosphoesterase; 93.6 0.032 1.1E-06 52.9 2.9 22 178-199 9-30 (171)
338 1e6c_A Shikimate kinase; phosp 93.6 0.036 1.2E-06 52.6 3.2 24 179-202 3-26 (173)
339 3gmt_A Adenylate kinase; ssgci 93.5 0.19 6.4E-06 49.7 8.3 24 179-202 9-32 (230)
340 3fwy_A Light-independent proto 93.5 0.04 1.4E-06 57.9 3.7 41 176-219 46-86 (314)
341 2j41_A Guanylate kinase; GMP, 93.5 0.04 1.4E-06 54.1 3.4 24 179-202 7-30 (207)
342 1uf9_A TT1252 protein; P-loop, 93.5 0.048 1.7E-06 53.2 4.1 26 176-201 6-31 (203)
343 3asz_A Uridine kinase; cytidin 93.5 0.045 1.5E-06 53.9 3.8 26 177-202 5-30 (211)
344 2pt5_A Shikimate kinase, SK; a 93.4 0.047 1.6E-06 51.5 3.8 23 180-202 2-24 (168)
345 3ney_A 55 kDa erythrocyte memb 93.4 0.046 1.6E-06 52.8 3.6 26 177-202 18-43 (197)
346 1qf9_A UMP/CMP kinase, protein 93.4 0.048 1.7E-06 52.7 3.9 25 178-202 6-30 (194)
347 2cdn_A Adenylate kinase; phosp 93.4 0.048 1.6E-06 53.3 3.8 24 179-202 21-44 (201)
348 1uj2_A Uridine-cytidine kinase 93.4 0.049 1.7E-06 55.4 4.0 26 177-202 21-46 (252)
349 3tlx_A Adenylate kinase 2; str 93.4 0.09 3.1E-06 53.1 6.0 26 177-202 28-53 (243)
350 3a4m_A L-seryl-tRNA(SEC) kinas 93.3 0.051 1.7E-06 55.6 4.1 25 178-202 4-28 (260)
351 1lvg_A Guanylate kinase, GMP k 93.3 0.037 1.3E-06 54.0 2.9 24 179-202 5-28 (198)
352 2grj_A Dephospho-COA kinase; T 93.3 0.058 2E-06 52.1 4.1 26 177-202 11-36 (192)
353 2yhs_A FTSY, cell division pro 93.3 0.26 8.9E-06 54.5 9.7 26 177-202 292-317 (503)
354 2pbr_A DTMP kinase, thymidylat 93.3 0.05 1.7E-06 52.7 3.8 23 180-202 2-24 (195)
355 2bbw_A Adenylate kinase 4, AK4 93.2 0.049 1.7E-06 55.2 3.8 25 178-202 27-51 (246)
356 1xjc_A MOBB protein homolog; s 93.2 0.056 1.9E-06 50.8 3.8 26 177-202 3-28 (169)
357 1zu4_A FTSY; GTPase, signal re 93.2 0.25 8.4E-06 52.0 9.2 26 177-202 104-129 (320)
358 3l0o_A Transcription terminati 93.2 0.043 1.5E-06 58.1 3.3 53 167-220 163-216 (427)
359 2qt1_A Nicotinamide riboside k 93.2 0.052 1.8E-06 53.3 3.8 26 177-202 20-45 (207)
360 4a1f_A DNAB helicase, replicat 93.2 0.26 8.9E-06 52.0 9.3 51 179-234 47-97 (338)
361 1jjv_A Dephospho-COA kinase; P 93.2 0.049 1.7E-06 53.5 3.5 22 179-200 3-24 (206)
362 3tqc_A Pantothenate kinase; bi 93.1 0.083 2.9E-06 55.4 5.2 43 160-202 70-116 (321)
363 2p5t_B PEZT; postsegregational 93.0 0.07 2.4E-06 54.3 4.6 26 177-202 31-56 (253)
364 2vli_A Antibiotic resistance p 93.0 0.039 1.3E-06 52.9 2.5 24 179-202 6-29 (183)
365 3cmu_A Protein RECA, recombina 93.0 0.15 5.3E-06 65.7 8.5 86 177-270 1426-1515(2050)
366 3fb4_A Adenylate kinase; psych 93.0 0.057 1.9E-06 53.4 3.7 23 180-202 2-24 (216)
367 1htw_A HI0065; nucleotide-bind 93.0 0.062 2.1E-06 50.0 3.7 27 176-202 31-57 (158)
368 1znw_A Guanylate kinase, GMP k 93.0 0.053 1.8E-06 53.3 3.4 25 178-202 20-44 (207)
369 2j37_W Signal recognition part 93.0 0.44 1.5E-05 53.2 11.2 26 177-202 100-125 (504)
370 2wwf_A Thymidilate kinase, put 92.9 0.057 2E-06 53.2 3.7 24 179-202 11-34 (212)
371 2z0h_A DTMP kinase, thymidylat 92.9 0.062 2.1E-06 52.1 3.7 23 180-202 2-24 (197)
372 1ls1_A Signal recognition part 92.8 0.25 8.6E-06 51.3 8.6 89 177-269 97-189 (295)
373 3rfe_A Platelet glycoprotein I 92.8 0.13 4.3E-06 46.1 5.4 52 520-572 12-65 (130)
374 4e22_A Cytidylate kinase; P-lo 92.8 0.06 2E-06 54.8 3.7 26 177-202 26-51 (252)
375 2jeo_A Uridine-cytidine kinase 92.8 0.067 2.3E-06 54.2 4.0 26 177-202 24-49 (245)
376 3aez_A Pantothenate kinase; tr 92.8 0.068 2.3E-06 56.1 4.1 27 176-202 88-114 (312)
377 3dl0_A Adenylate kinase; phosp 92.7 0.061 2.1E-06 53.2 3.5 23 180-202 2-24 (216)
378 1nn5_A Similar to deoxythymidy 92.7 0.065 2.2E-06 52.9 3.7 25 178-202 9-33 (215)
379 1aky_A Adenylate kinase; ATP:A 92.7 0.067 2.3E-06 53.1 3.8 24 179-202 5-28 (220)
380 1zd8_A GTP:AMP phosphotransfer 92.7 0.066 2.2E-06 53.5 3.7 24 179-202 8-31 (227)
381 1z6g_A Guanylate kinase; struc 92.6 0.052 1.8E-06 53.8 2.9 25 178-202 23-47 (218)
382 1gtv_A TMK, thymidylate kinase 92.5 0.041 1.4E-06 54.3 1.9 23 180-202 2-24 (214)
383 1s96_A Guanylate kinase, GMP k 92.5 0.068 2.3E-06 52.9 3.5 26 177-202 15-40 (219)
384 1pgv_A TMD-1, tropomodulin TMD 92.5 0.14 4.9E-06 49.2 5.6 115 559-682 38-168 (197)
385 1zak_A Adenylate kinase; ATP:A 92.4 0.066 2.3E-06 53.2 3.4 24 179-202 6-29 (222)
386 2pez_A Bifunctional 3'-phospho 92.4 0.078 2.7E-06 50.6 3.7 25 178-202 5-29 (179)
387 2v54_A DTMP kinase, thymidylat 92.4 0.068 2.3E-06 52.2 3.3 24 179-202 5-28 (204)
388 1m7g_A Adenylylsulfate kinase; 92.4 0.084 2.9E-06 52.0 3.9 27 176-202 23-49 (211)
389 2i3b_A HCR-ntpase, human cance 92.2 0.074 2.5E-06 51.2 3.3 23 180-202 3-25 (189)
390 2f1r_A Molybdopterin-guanine d 92.2 0.075 2.6E-06 50.2 3.2 25 178-202 2-26 (171)
391 3r20_A Cytidylate kinase; stru 92.2 0.087 3E-06 52.4 3.8 24 179-202 10-33 (233)
392 3end_A Light-independent proto 92.2 0.13 4.6E-06 53.9 5.5 43 176-221 39-81 (307)
393 1pgv_A TMD-1, tropomodulin TMD 92.2 0.11 3.9E-06 49.9 4.5 108 536-645 39-168 (197)
394 3nwj_A ATSK2; P loop, shikimat 92.2 0.07 2.4E-06 53.9 3.1 24 179-202 49-72 (250)
395 3ake_A Cytidylate kinase; CMP 92.1 0.087 3E-06 51.6 3.7 23 180-202 4-26 (208)
396 3p32_A Probable GTPase RV1496/ 92.1 0.25 8.6E-06 53.0 7.6 37 166-202 65-103 (355)
397 3k1j_A LON protease, ATP-depen 92.1 0.1 3.5E-06 60.6 4.8 43 158-202 42-84 (604)
398 3be4_A Adenylate kinase; malar 92.0 0.093 3.2E-06 51.9 3.8 24 179-202 6-29 (217)
399 3d3q_A TRNA delta(2)-isopenten 91.9 0.094 3.2E-06 55.2 3.8 24 179-202 8-31 (340)
400 2xb4_A Adenylate kinase; ATP-b 91.9 0.096 3.3E-06 52.1 3.8 23 180-202 2-24 (223)
401 2f6r_A COA synthase, bifunctio 91.9 0.093 3.2E-06 54.3 3.8 24 177-200 74-97 (281)
402 1vht_A Dephospho-COA kinase; s 91.9 0.089 3.1E-06 52.1 3.5 22 179-200 5-26 (218)
403 1e4v_A Adenylate kinase; trans 91.9 0.095 3.3E-06 51.7 3.7 23 180-202 2-24 (214)
404 1np6_A Molybdopterin-guanine d 91.9 0.1 3.5E-06 49.4 3.7 26 177-202 5-30 (174)
405 2ewv_A Twitching motility prot 91.8 0.09 3.1E-06 56.8 3.7 113 176-300 134-246 (372)
406 3vr4_D V-type sodium ATPase su 91.8 0.14 4.8E-06 55.7 5.1 99 169-271 141-259 (465)
407 4eaq_A DTMP kinase, thymidylat 91.8 0.18 6.2E-06 50.2 5.7 26 177-202 25-50 (229)
408 2onk_A Molybdate/tungstate ABC 91.8 0.093 3.2E-06 52.7 3.5 26 176-202 23-48 (240)
409 2ehv_A Hypothetical protein PH 91.7 0.089 3.1E-06 53.3 3.4 24 178-201 30-53 (251)
410 3lnc_A Guanylate kinase, GMP k 91.6 0.061 2.1E-06 53.9 2.0 25 178-202 27-52 (231)
411 3fdi_A Uncharacterized protein 91.6 0.27 9.2E-06 47.8 6.6 24 179-202 7-30 (201)
412 1rj9_A FTSY, signal recognitio 91.6 0.099 3.4E-06 54.6 3.6 26 177-202 101-126 (304)
413 1sq5_A Pantothenate kinase; P- 91.6 0.18 6.2E-06 52.9 5.6 26 177-202 79-104 (308)
414 1ak2_A Adenylate kinase isoenz 91.5 0.11 3.8E-06 52.0 3.8 24 179-202 17-40 (233)
415 3crm_A TRNA delta(2)-isopenten 91.4 0.12 4E-06 54.1 3.9 24 179-202 6-29 (323)
416 1cr0_A DNA primase/helicase; R 91.4 0.23 8E-06 51.7 6.3 51 177-231 34-84 (296)
417 2pcj_A ABC transporter, lipopr 91.4 0.087 3E-06 52.4 2.8 25 178-202 30-54 (224)
418 3tif_A Uncharacterized ABC tra 91.3 0.091 3.1E-06 52.7 2.8 26 177-202 30-55 (235)
419 1q57_A DNA primase/helicase; d 91.2 0.43 1.5E-05 53.9 8.8 51 178-232 242-292 (503)
420 3b9q_A Chloroplast SRP recepto 91.2 0.13 4.5E-06 53.6 4.0 26 177-202 99-124 (302)
421 3b85_A Phosphate starvation-in 91.1 0.086 2.9E-06 51.7 2.3 23 179-201 23-45 (208)
422 3exa_A TRNA delta(2)-isopenten 91.1 0.12 4.2E-06 53.3 3.6 24 179-202 4-27 (322)
423 3gfo_A Cobalt import ATP-bindi 90.9 0.1 3.6E-06 53.5 2.8 25 178-202 34-58 (275)
424 3io3_A DEHA2D07832P; chaperone 90.8 0.27 9.1E-06 52.3 6.1 51 174-225 14-64 (348)
425 2q6t_A DNAB replication FORK h 90.8 0.63 2.1E-05 51.6 9.4 51 178-232 200-250 (444)
426 2r6a_A DNAB helicase, replicat 90.8 0.47 1.6E-05 52.8 8.4 50 178-231 203-252 (454)
427 3iqw_A Tail-anchored protein t 90.8 0.3 1E-05 51.6 6.4 50 173-225 11-60 (334)
428 1b0u_A Histidine permease; ABC 90.8 0.11 3.7E-06 53.1 2.8 26 177-202 31-56 (262)
429 2cbz_A Multidrug resistance-as 90.7 0.11 3.7E-06 52.2 2.8 26 177-202 30-55 (237)
430 2d2e_A SUFC protein; ABC-ATPas 90.7 0.13 4.3E-06 52.2 3.3 24 178-201 29-52 (250)
431 3cmu_A Protein RECA, recombina 90.6 0.47 1.6E-05 61.4 9.0 87 177-271 382-472 (2050)
432 2zu0_C Probable ATP-dependent 90.6 0.13 4.5E-06 52.6 3.4 25 177-201 45-69 (267)
433 1oix_A RAS-related protein RAB 90.6 0.15 5E-06 49.3 3.5 25 178-202 29-53 (191)
434 4g1u_C Hemin import ATP-bindin 90.6 0.11 3.9E-06 53.0 2.9 25 178-202 37-61 (266)
435 1nlf_A Regulatory protein REPA 90.6 0.23 7.8E-06 51.3 5.2 24 179-202 31-54 (279)
436 1ji0_A ABC transporter; ATP bi 90.6 0.12 3.9E-06 52.1 2.8 25 178-202 32-56 (240)
437 2olj_A Amino acid ABC transpor 90.5 0.12 4E-06 52.7 2.8 26 177-202 49-74 (263)
438 1sgw_A Putative ABC transporte 90.5 0.1 3.4E-06 51.4 2.3 24 179-202 36-59 (214)
439 3foz_A TRNA delta(2)-isopenten 90.5 0.16 5.6E-06 52.3 3.9 25 178-202 10-34 (316)
440 1a7j_A Phosphoribulokinase; tr 90.5 0.079 2.7E-06 55.0 1.5 26 177-202 4-29 (290)
441 3a8t_A Adenylate isopentenyltr 90.5 0.12 4.1E-06 54.2 2.9 25 178-202 40-64 (339)
442 3bgw_A DNAB-like replicative h 90.5 0.46 1.6E-05 52.5 7.8 50 178-232 197-246 (444)
443 1g6h_A High-affinity branched- 90.4 0.12 4.1E-06 52.6 2.8 25 178-202 33-57 (257)
444 2orv_A Thymidine kinase; TP4A 90.4 0.44 1.5E-05 46.8 6.6 108 178-299 19-127 (234)
445 1ltq_A Polynucleotide kinase; 90.4 0.15 5.2E-06 53.3 3.7 23 179-201 3-25 (301)
446 1g8f_A Sulfate adenylyltransfe 90.4 0.24 8.1E-06 55.4 5.4 43 160-202 375-419 (511)
447 2pze_A Cystic fibrosis transme 90.3 0.13 4.3E-06 51.4 2.8 25 178-202 34-58 (229)
448 1mv5_A LMRA, multidrug resista 90.3 0.13 4.6E-06 51.8 3.0 26 177-202 27-52 (243)
449 3lv8_A DTMP kinase, thymidylat 90.3 0.39 1.3E-05 47.9 6.4 36 179-216 28-63 (236)
450 3gqb_B V-type ATP synthase bet 90.3 0.18 6.3E-06 54.8 4.2 102 169-271 137-262 (464)
451 3cmw_A Protein RECA, recombina 90.3 0.46 1.6E-05 60.7 8.4 88 177-272 382-473 (1706)
452 1vpl_A ABC transporter, ATP-bi 90.3 0.13 4.3E-06 52.3 2.8 26 177-202 40-65 (256)
453 1cp2_A CP2, nitrogenase iron p 90.3 0.33 1.1E-05 49.7 6.1 39 179-220 2-40 (269)
454 4edh_A DTMP kinase, thymidylat 90.3 0.44 1.5E-05 46.7 6.7 24 179-202 7-30 (213)
455 2ff7_A Alpha-hemolysin translo 90.2 0.13 4.4E-06 52.0 2.8 25 178-202 35-59 (247)
456 1yrb_A ATP(GTP)binding protein 90.2 0.19 6.4E-06 51.3 4.1 26 177-202 13-38 (262)
457 2v3c_C SRP54, signal recogniti 90.2 0.13 4.5E-06 56.5 3.1 25 178-202 99-123 (432)
458 4tmk_A Protein (thymidylate ki 90.2 0.43 1.5E-05 46.7 6.5 52 179-232 4-55 (213)
459 2og2_A Putative signal recogni 90.1 0.18 6.2E-06 53.7 4.0 25 178-202 157-181 (359)
460 3mfy_A V-type ATP synthase alp 90.1 0.67 2.3E-05 51.4 8.5 58 168-230 216-275 (588)
461 2qi9_C Vitamin B12 import ATP- 90.1 0.14 4.6E-06 51.8 2.8 24 179-202 27-50 (249)
462 3f9v_A Minichromosome maintena 90.1 0.085 2.9E-06 60.8 1.5 46 157-202 295-351 (595)
463 2qe7_A ATP synthase subunit al 90.0 0.33 1.1E-05 53.5 5.9 98 169-271 152-265 (502)
464 2v9p_A Replication protein E1; 90.0 0.17 5.7E-06 52.6 3.5 27 176-202 124-150 (305)
465 1q3t_A Cytidylate kinase; nucl 89.9 0.2 6.8E-06 50.2 4.0 26 177-202 15-40 (236)
466 2ghi_A Transport protein; mult 89.9 0.14 4.8E-06 52.1 2.8 26 177-202 45-70 (260)
467 2eyu_A Twitching motility prot 89.9 0.18 6.3E-06 51.3 3.7 112 176-300 23-135 (261)
468 2ixe_A Antigen peptide transpo 89.9 0.14 4.8E-06 52.5 2.8 26 177-202 44-69 (271)
469 2r8r_A Sensor protein; KDPD, P 89.9 0.31 1.1E-05 47.8 5.1 39 179-220 7-45 (228)
470 2r9v_A ATP synthase subunit al 89.9 0.34 1.2E-05 53.3 5.9 98 169-271 165-278 (515)
471 2f9l_A RAB11B, member RAS onco 89.9 0.17 5.7E-06 49.2 3.2 24 179-202 6-29 (199)
472 2nq2_C Hypothetical ABC transp 89.8 0.15 5E-06 51.8 2.8 24 179-202 32-55 (253)
473 2ihy_A ABC transporter, ATP-bi 89.8 0.15 5E-06 52.6 2.8 25 178-202 47-71 (279)
474 3hjn_A DTMP kinase, thymidylat 89.8 0.51 1.7E-05 45.7 6.6 23 180-202 2-24 (197)
475 2yz2_A Putative ABC transporte 89.7 0.15 5E-06 52.3 2.8 26 177-202 32-57 (266)
476 2dyk_A GTP-binding protein; GT 89.7 0.21 7.3E-06 46.1 3.8 24 179-202 2-25 (161)
477 2wji_A Ferrous iron transport 89.5 0.23 7.7E-06 46.5 3.8 23 179-201 4-26 (165)
478 2afh_E Nitrogenase iron protei 89.5 0.33 1.1E-05 50.3 5.5 40 178-220 2-41 (289)
479 3sop_A Neuronal-specific septi 89.5 0.19 6.5E-06 51.5 3.5 23 180-202 4-26 (270)
480 1svm_A Large T antigen; AAA+ f 89.5 0.2 6.8E-06 53.9 3.7 27 176-202 167-193 (377)
481 3eph_A TRNA isopentenyltransfe 89.4 0.23 7.7E-06 53.4 4.0 24 179-202 3-26 (409)
482 1fx0_A ATP synthase alpha chai 89.4 0.33 1.1E-05 53.5 5.3 89 178-271 163-266 (507)
483 2qmh_A HPR kinase/phosphorylas 89.3 0.17 5.7E-06 48.5 2.5 24 179-202 35-58 (205)
484 1tq4_A IIGP1, interferon-induc 89.2 0.27 9.4E-06 53.4 4.6 25 177-201 68-92 (413)
485 2ocp_A DGK, deoxyguanosine kin 89.1 0.25 8.7E-06 49.6 4.0 24 179-202 3-26 (241)
486 3cmw_A Protein RECA, recombina 89.1 0.6 2.1E-05 59.6 8.1 85 178-270 1431-1519(1706)
487 2zej_A Dardarin, leucine-rich 89.0 0.19 6.6E-06 48.0 2.9 22 180-201 4-25 (184)
488 1p9r_A General secretion pathw 89.0 0.59 2E-05 51.0 7.1 28 175-202 164-191 (418)
489 3upu_A ATP-dependent DNA helic 88.9 0.42 1.5E-05 53.3 6.1 41 161-202 29-69 (459)
490 2pjz_A Hypothetical protein ST 88.9 0.19 6.4E-06 51.2 2.8 24 178-201 30-53 (263)
491 3zvl_A Bifunctional polynucleo 88.8 0.18 6.1E-06 55.5 2.8 27 176-202 256-282 (416)
492 1u0j_A DNA replication protein 88.8 0.39 1.3E-05 48.4 5.1 36 167-202 91-128 (267)
493 2yv5_A YJEQ protein; hydrolase 88.7 0.33 1.1E-05 50.6 4.7 33 166-202 156-188 (302)
494 3cr8_A Sulfate adenylyltranfer 88.7 0.34 1.2E-05 54.9 5.0 26 177-202 368-393 (552)
495 2ged_A SR-beta, signal recogni 88.6 0.43 1.5E-05 45.7 5.2 26 177-202 47-72 (193)
496 3kta_A Chromosome segregation 88.6 0.24 8.3E-06 47.2 3.3 24 179-202 27-50 (182)
497 2ce2_X GTPase HRAS; signaling 88.6 0.24 8.1E-06 45.9 3.2 23 180-202 5-27 (166)
498 3fvq_A Fe(3+) IONS import ATP- 88.6 0.22 7.7E-06 52.9 3.3 26 177-202 29-54 (359)
499 2c61_A A-type ATP synthase non 88.6 0.37 1.3E-05 52.7 5.0 102 169-271 142-260 (469)
500 2ck3_A ATP synthase subunit al 88.5 0.46 1.6E-05 52.4 5.8 102 169-271 152-273 (510)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=3.6e-47 Score=442.85 Aligned_cols=314 Identities=13% Similarity=0.136 Sum_probs=250.0
Q ss_pred CcccchhhHHHHHHHHhccC---CeeEEEEEcCCCCcHHHHHHHHHH--HhhhccCCCceEEEEEeCCCC--CHHHHHHH
Q 042817 157 PRIIGQESIFDDAWRCMIEE---QVGIIGLYGAGGVGKTTLLKQLNN--KLCQERHDFDIVIWVVVSKDL--NLEKVQED 229 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~ 229 (922)
+..|||+.++++|.++|..+ ..++|+|+||||+||||||++||+ +. .++.+|+.++||++++.+ ++..++..
T Consensus 128 ~~~~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 128 MTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTD 206 (549)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHH
T ss_pred CccCCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHH
Confidence 34359999999999999753 679999999999999999999998 34 568899999999999985 78999999
Q ss_pred HHhhccCCcc-----cccCCChhhhHHHHHHHhcCC-cEEEEEccCCCccccccccccCCCCCCCcEEEEEcCChhhhcc
Q 042817 230 IGKKIDMFSE-----SWKNKSPVEKSCAIFKILSNK-KFVLLLDDMWEPVDLTKVGVPIPNSTNASKVVFTTRYKEVCGK 303 (922)
Q Consensus 230 i~~~l~~~~~-----~~~~~~~~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTtR~~~v~~~ 303 (922)
|+.+++.... .....+..++...+++.|+++ ||||||||||+..++ .+. ..+||+||||||++.++..
T Consensus 207 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~ 280 (549)
T 2a5y_B 207 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNA 280 (549)
T ss_dssp HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGG
T ss_pred HHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCCHHHHHH
Confidence 9999976532 112234456688999999996 999999999998754 221 1279999999999999987
Q ss_pred cc-ccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHHHhhhccCCCHHHHHHHHHHHhc
Q 042817 304 ME-AHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITIGRAMSCKNKLEEWKHAVNVLKK 382 (922)
Q Consensus 304 ~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~~w~~~~~~l~~ 382 (922)
++ ....|++++|+.+|||+||.+.++... .++.+++++++|+++|+|+||||+++|+.|+.+ + |+.+ +.+..
T Consensus 281 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~ 353 (549)
T 2a5y_B 281 ASQTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNN 353 (549)
T ss_dssp CCSCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHH
T ss_pred cCCCCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHH
Confidence 75 446799999999999999999987653 246778899999999999999999999999764 3 4433 33332
Q ss_pred cCCCCCCccchhhhhhhhcCCCCCchhhhhhh-----------hcccCCCCCccCHHHHHHHHhhc--CCccccccchhh
Q 042817 383 SSSKFPGMDAMYPHLKFSYDRLPDNKIRSCFL-----------YCSLFPEDYKISKEDLIDCWIGE--EFFDEEHNGIGA 449 (922)
Q Consensus 383 ~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl-----------~~s~fp~~~~i~~~~li~~W~a~--g~i~~~~~~~~~ 449 (922)
..+.. ....+..++.+||+.||+ ++|.||+ |||+||+++.|+ +++|+|+ ||+...+.....
T Consensus 354 ~l~~~-~~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~ 427 (549)
T 2a5y_B 354 KLESR-GLVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLD 427 (549)
T ss_dssp HHHHH-CSSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCT
T ss_pred Hhhcc-cHHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCH
Confidence 21110 123788999999999998 8999999 999999999998 8999999 999876434455
Q ss_pred HhhHHHHHHHHHHhcccccc---CcceEEEcceeehhHHHHHhhh
Q 042817 450 RNEGYAIIGDLIRTCLLEED---ADDFVELHDVVRDMALWIASEI 491 (922)
Q Consensus 450 ~~~~~~~~~~L~~~sll~~~---~~~~~~mHdlv~~~a~~~~~~~ 491 (922)
++.+. ++++|+++||++.. ...+|+|||++|++|++++.+.
T Consensus 428 ~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~ 471 (549)
T 2a5y_B 428 DEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQ 471 (549)
T ss_dssp HHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTH
T ss_pred HHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHH
Confidence 66666 99999999999975 3457999999999999888654
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=3e-39 Score=377.04 Aligned_cols=285 Identities=16% Similarity=0.242 Sum_probs=229.8
Q ss_pred cccchhhHHHHHHHHhcc-CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCce-EEEEEeCCCCCHHHHHHHHHhhcc
Q 042817 158 RIIGQESIFDDAWRCMIE-EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDI-VIWVVVSKDLNLEKVQEDIGKKID 235 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~i~~~l~ 235 (922)
..|||+.++++|.++|.+ +..++|+|+||||+||||||+++|++. +++.+|+. ++|+++++.++...++..|++.++
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 459999999999999976 567999999999999999999999876 55778985 999999999998888888887653
Q ss_pred CCcccc----c-----CCChhhhHHHHHHHh---cCCcEEEEEccCCCccccccccccCCCCCCCcEEEEEcCChhhhcc
Q 042817 236 MFSESW----K-----NKSPVEKSCAIFKIL---SNKKFVLLLDDMWEPVDLTKVGVPIPNSTNASKVVFTTRYKEVCGK 303 (922)
Q Consensus 236 ~~~~~~----~-----~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTtR~~~v~~~ 303 (922)
...... . ..+.+++...+++.| .++|+||||||||+...|+.+ .+||+||||||++.++..
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd~~Va~~ 280 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFKQVTDF 280 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSCSHHHHH
T ss_pred hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-------CCCeEEEEeccChHHHHh
Confidence 221000 0 012334456677765 679999999999998888764 268999999999999865
Q ss_pred ccccceeecC------CCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHHHhhhccC-CCHHHHHHH
Q 042817 304 MEAHKKLRVE------CLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITIGRAMSCK-NKLEEWKHA 376 (922)
Q Consensus 304 ~~~~~~~~l~------~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~-~~~~~w~~~ 376 (922)
+.....|.++ +|+.+|||+||+...... ..++..+| |+|+||||+++|+.|+.+ .+.++|+..
T Consensus 281 l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~ 350 (1221)
T 1vt4_I 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV 350 (1221)
T ss_dssp HHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC
T ss_pred cCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC
Confidence 4444467777 999999999999885322 22344444 999999999999999986 367788752
Q ss_pred HHHHhccCCCCCCccchhhhhhhhcCCCCCchh-hhhhhhcccCCCCCccCHHHHHHHHhhcCCccccccchhhHhhHHH
Q 042817 377 VNVLKKSSSKFPGMDAMYPHLKFSYDRLPDNKI-RSCFLYCSLFPEDYKISKEDLIDCWIGEEFFDEEHNGIGARNEGYA 455 (922)
Q Consensus 377 ~~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~~-k~cfl~~s~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~~~~~~ 455 (922)
....+..+|++||+.||+ +. |.||+|||+||+++.|+++.++.+|+++| ++.+..
T Consensus 351 ------------~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedAe~ 406 (1221)
T 1vt4_I 351 ------------NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDVMV 406 (1221)
T ss_dssp ------------SCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHHHH
T ss_pred ------------ChhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHHHHH
Confidence 123799999999999999 78 99999999999999999999999999886 134778
Q ss_pred HHHHHHHhcccccc-CcceEEEcceeehhH
Q 042817 456 IIGDLIRTCLLEED-ADDFVELHDVVRDMA 484 (922)
Q Consensus 456 ~~~~L~~~sll~~~-~~~~~~mHdlv~~~a 484 (922)
++++|+++||++.. ...+|+|||++++++
T Consensus 407 ~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 407 VVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 99999999999985 467899999998855
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6e-37 Score=396.59 Aligned_cols=310 Identities=21% Similarity=0.294 Sum_probs=251.8
Q ss_pred CCcccchhhHHHHHHHHhc--cCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccC-CCceEEEEEeCCCCC--HHHHHHHH
Q 042817 156 EPRIIGQESIFDDAWRCMI--EEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERH-DFDIVIWVVVSKDLN--LEKVQEDI 230 (922)
Q Consensus 156 ~~~~vGr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~F~~~~wv~~s~~~~--~~~~~~~i 230 (922)
.+.||||++++++|.++|. +++.++|+|+||||+||||||+++|++...... .|+.++||++++..+ ....+..+
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 202 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNL 202 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHH
T ss_pred CceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHH
Confidence 4579999999999999995 357899999999999999999999988633344 457889999998654 34446667
Q ss_pred HhhccCCccc--ccCCChhhhHHHHHHHhcCC--cEEEEEccCCCccccccccccCCCCCCCcEEEEEcCChhhhcc-cc
Q 042817 231 GKKIDMFSES--WKNKSPVEKSCAIFKILSNK--KFVLLLDDMWEPVDLTKVGVPIPNSTNASKVVFTTRYKEVCGK-ME 305 (922)
Q Consensus 231 ~~~l~~~~~~--~~~~~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTtR~~~v~~~-~~ 305 (922)
+..+...... ....+.+++...++..+.++ |+||||||||+..+|..+ ++||+||||||++.++.. +.
T Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~ 275 (1249)
T 3sfz_A 203 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMG 275 (1249)
T ss_dssp HHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCS
T ss_pred HHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhcC
Confidence 7776543211 12345677788888888877 999999999998877764 578999999999999854 45
Q ss_pred ccceeecCC-CCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHHHhhhccCCCHHHHHHHHHHHhccC
Q 042817 306 AHKKLRVEC-LTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITIGRAMSCKNKLEEWKHAVNVLKKSS 384 (922)
Q Consensus 306 ~~~~~~l~~-L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~~w~~~~~~l~~~~ 384 (922)
....+.+.+ |+++||++||...++... +.+++.+++|+++|+|+||||+++|++|+.+. ..|+..++.+....
T Consensus 276 ~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~ 349 (1249)
T 3sfz_A 276 PKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQ 349 (1249)
T ss_dssp CBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCC
T ss_pred CceEEEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhh
Confidence 667899996 999999999999885432 44567899999999999999999999998754 46999998887654
Q ss_pred CCC-C-----CccchhhhhhhhcCCCCCchhhhhhhhcccCCCCCccCHHHHHHHHhhcCCccccccchhhHhhHHHHHH
Q 042817 385 SKF-P-----GMDAMYPHLKFSYDRLPDNKIRSCFLYCSLFPEDYKISKEDLIDCWIGEEFFDEEHNGIGARNEGYAIIG 458 (922)
Q Consensus 385 ~~~-~-----~~~~~~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~~~~~~~~~ 458 (922)
... . ..+.+..+|.+||+.||+ +.|.||+|||+||+++.|+++.++.+|.++ ++.+..+++
T Consensus 350 ~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~ 416 (1249)
T 3sfz_A 350 FKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQ 416 (1249)
T ss_dssp CCCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHH
T ss_pred hhhcccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHHHH
Confidence 321 1 112689999999999999 899999999999999999999999999654 356788999
Q ss_pred HHHHhccccccCcc---eEEEcceeehhHHHHHhhh
Q 042817 459 DLIRTCLLEEDADD---FVELHDVVRDMALWIASEI 491 (922)
Q Consensus 459 ~L~~~sll~~~~~~---~~~mHdlv~~~a~~~~~~~ 491 (922)
+|+++||++....+ +|+||+++|++++..+.++
T Consensus 417 ~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 417 EFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 99999999876333 5999999999999886553
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=2.1e-34 Score=341.02 Aligned_cols=304 Identities=20% Similarity=0.289 Sum_probs=236.7
Q ss_pred CCcccchhhHHHHHHHHhcc--CCeeEEEEEcCCCCcHHHHHHHHHHHhhhc-cCCC-ceEEEEEeCCCCCHHHHHHHH-
Q 042817 156 EPRIIGQESIFDDAWRCMIE--EQVGIIGLYGAGGVGKTTLLKQLNNKLCQE-RHDF-DIVIWVVVSKDLNLEKVQEDI- 230 (922)
Q Consensus 156 ~~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~F-~~~~wv~~s~~~~~~~~~~~i- 230 (922)
.+.||||+.++++|.+.|.. ++.++|+|+||||+||||||++++++. .. ..+| +.++|++++.. +...+...+
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCC-chHHHHHHHH
Confidence 45799999999999999973 467899999999999999999999875 33 5678 58999999876 333444443
Q ss_pred --HhhccCCc--ccccCCChhhhHHHHHHHhcC--CcEEEEEccCCCccccccccccCCCCCCCcEEEEEcCChhhhccc
Q 042817 231 --GKKIDMFS--ESWKNKSPVEKSCAIFKILSN--KKFVLLLDDMWEPVDLTKVGVPIPNSTNASKVVFTTRYKEVCGKM 304 (922)
Q Consensus 231 --~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTtR~~~v~~~~ 304 (922)
+..++... ......+.......+...+.+ +++||||||||+...+..+ ++|++||||||+..++..+
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~ 273 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSV 273 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTC
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhc
Confidence 33443211 111334566777788888876 7999999999987665533 4689999999999987654
Q ss_pred cccceeec---CCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHHHhhhccCCCHHHHHHHHHHHh
Q 042817 305 EAHKKLRV---ECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITIGRAMSCKNKLEEWKHAVNVLK 381 (922)
Q Consensus 305 ~~~~~~~l---~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~~w~~~~~~l~ 381 (922)
. ...+++ ++|+.+||++||...++... ....+.+.+|+++|+|+||||+.+|+.++... ..|...++.+.
T Consensus 274 ~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~ 346 (591)
T 1z6t_A 274 M-GPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQ 346 (591)
T ss_dssp C-SCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHH
T ss_pred C-CCceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHH
Confidence 3 344444 58999999999999886532 22346789999999999999999999998753 46998888887
Q ss_pred ccCCC-C-----CCccchhhhhhhhcCCCCCchhhhhhhhcccCCCCCccCHHHHHHHHhhcCCccccccchhhHhhHHH
Q 042817 382 KSSSK-F-----PGMDAMYPHLKFSYDRLPDNKIRSCFLYCSLFPEDYKISKEDLIDCWIGEEFFDEEHNGIGARNEGYA 455 (922)
Q Consensus 382 ~~~~~-~-----~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~~~~~~ 455 (922)
..... . .....+..++..||+.||+ +.|.||++||+||+++.|+.+.++.+|.++ .+.+..
T Consensus 347 ~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~ 413 (591)
T 1z6t_A 347 NKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVED 413 (591)
T ss_dssp SCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHH
T ss_pred HhHHHHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHHH
Confidence 65322 1 1123788999999999999 799999999999999999999999999543 234678
Q ss_pred HHHHHHHhcccccc---CcceEEEcceeehhHHHHH
Q 042817 456 IIGDLIRTCLLEED---ADDFVELHDVVRDMALWIA 488 (922)
Q Consensus 456 ~~~~L~~~sll~~~---~~~~~~mHdlv~~~a~~~~ 488 (922)
++++|+++||++.. ....|+||+++|++++...
T Consensus 414 ~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 414 ILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 89999999999854 2347999999999998773
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=7e-25 Score=241.47 Aligned_cols=307 Identities=15% Similarity=0.190 Sum_probs=234.6
Q ss_pred CCccccccceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCC
Q 042817 510 PGIEKWKGVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQ 589 (922)
Q Consensus 510 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 589 (922)
.....++++++|++.++.+..++....+++|++|++++|.+..+++ +..+++|++|++++| .+..+| .++.+++|+
T Consensus 38 ~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~ 113 (347)
T 4fmz_A 38 VTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLR 113 (347)
T ss_dssp ECHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCS
T ss_pred ccchhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCC-cccCch-HHcCCCcCC
Confidence 3455677899999999999888888889999999999998888876 889999999999999 787776 588999999
Q ss_pred eeeeccCCccccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhc
Q 042817 590 YLNLSSTGIRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLC 669 (922)
Q Consensus 590 ~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 669 (922)
+|++++|.++.+|. +..+++|++|++++|.....++. +.++++|++|++.+|.... ...+..
T Consensus 114 ~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~---------------~~~~~~ 175 (347)
T 4fmz_A 114 ELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKD---------------VTPIAN 175 (347)
T ss_dssp EEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCC---------------CGGGGG
T ss_pred EEECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCC---------------chhhcc
Confidence 99999999998887 88999999999999976666665 8899999999999887321 112778
Q ss_pred CCCCceEEEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeecccccccCC
Q 042817 670 LNHLSVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKT 749 (922)
Q Consensus 670 L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~ 749 (922)
+++|+.|+++.+....+.. .....+|+.|.+.++.. .. ...+..+++|++|++++|.+..++. +
T Consensus 176 l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l--~~--~~~~~~~~~L~~L~l~~n~l~~~~~--~------ 239 (347)
T 4fmz_A 176 LTDLYSLSLNYNQIEDISP----LASLTSLHYFTAYVNQI--TD--ITPVANMTRLNSLKIGNNKITDLSP--L------ 239 (347)
T ss_dssp CTTCSEEECTTSCCCCCGG----GGGCTTCCEEECCSSCC--CC--CGGGGGCTTCCEEECCSSCCCCCGG--G------
T ss_pred CCCCCEEEccCCccccccc----ccCCCccceeecccCCC--CC--CchhhcCCcCCEEEccCCccCCCcc--h------
Confidence 8999999987665544332 34466888899888752 11 1226788899999999988766432 2
Q ss_pred CCCccCCcccEEEEecCCCCCCCchhhccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCccceeecCcccc
Q 042817 750 PETSRFHNLHRVGIVNCKSLKDITWLIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLESLKLARLPN 829 (922)
Q Consensus 750 ~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~ 829 (922)
..+++|+.|++++| .++.++.+..+++|+.|++++| .+..++ ....+++|+.|++++|..
T Consensus 240 ---~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~~---------------~~~~l~~L~~L~L~~n~l 299 (347)
T 4fmz_A 240 ---ANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSN-QISDIS---------------VLNNLSQLNSLFLNNNQL 299 (347)
T ss_dssp ---TTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCG---------------GGGGCTTCSEEECCSSCC
T ss_pred ---hcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCC-ccCCCh---------------hhcCCCCCCEEECcCCcC
Confidence 23789999999988 6777788888999999999887 455441 345678999999998754
Q ss_pred ccccccCCcCCCCccEEEecCCCCCCCCCCCCCcccccceEEEccc
Q 042817 830 LESVYWTPLSFSHLKEIRIFKCPRLWKLPLDSNSAKERKIVIKGEI 875 (922)
Q Consensus 830 L~~l~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~l~~l~I~g~~ 875 (922)
-...+.....+++|+.|++++|+ ++.+|.....+.++.+++.+++
T Consensus 300 ~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 300 GNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp CGGGHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCSEESSSCC-
T ss_pred CCcChhHhhccccCCEEEccCCc-cccccChhhhhccceeehhhhc
Confidence 33333344568899999999986 6665443344566777777664
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=8.4e-23 Score=224.82 Aligned_cols=293 Identities=18% Similarity=0.253 Sum_probs=235.3
Q ss_pred cCCccccCCCccccccceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCcc
Q 042817 502 AGVGLTEAPGIEKWKGVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPG 581 (922)
Q Consensus 502 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~ 581 (922)
.+.....++.+..++++++|++++|.+..++....+++|++|++++|.+..++ .+..+++|++|++++| .+..+|.
T Consensus 52 ~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~--~~~~l~~L~~L~l~~n-~i~~~~~- 127 (347)
T 4fmz_A 52 AGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLNED-NISDISP- 127 (347)
T ss_dssp CSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECTTS-CCCCCGG-
T ss_pred eCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch--HHcCCCcCCEEECcCC-cccCchh-
Confidence 34455566778889999999999999999888899999999999999988875 3899999999999999 7888887
Q ss_pred ccCcccCCeeeeccCCccccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCcc
Q 042817 582 ISKLISLQYLNLSSTGIRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGE 661 (922)
Q Consensus 582 i~~L~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 661 (922)
+..+++|++|++++|.....+..+..+++|++|++++|. +..++. +.++++|++|++++|....
T Consensus 128 ~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~~------------- 191 (347)
T 4fmz_A 128 LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIED------------- 191 (347)
T ss_dssp GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCCC-------------
T ss_pred hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCcccc-------------
Confidence 899999999999999555444569999999999999997 566665 7899999999999987321
Q ss_pred chHHHhhcCCCCceEEEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeec
Q 042817 662 ILIEELLCLNHLSVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQID 741 (922)
Q Consensus 662 ~~~~~L~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~ 741 (922)
+..+..+++|+.|+++.+....... ...+++|+.|+++++.. .... .+..+++|+.|++++|.+..+ .
T Consensus 192 --~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l--~~~~--~~~~l~~L~~L~l~~n~l~~~--~ 259 (347)
T 4fmz_A 192 --ISPLASLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKI--TDLS--PLANLSQLTWLEIGTNQISDI--N 259 (347)
T ss_dssp --CGGGGGCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCC--CCCG--GGTTCTTCCEEECCSSCCCCC--G
T ss_pred --cccccCCCccceeecccCCCCCCch----hhcCCcCCEEEccCCcc--CCCc--chhcCCCCCEEECCCCccCCC--h
Confidence 1227889999999998765544332 34567999999999862 1221 278899999999999987664 2
Q ss_pred ccccccCCCCCccCCcccEEEEecCCCCCCCchhhccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCccce
Q 042817 742 CVGEIRKTPETSRFHNLHRVGIVNCKSLKDITWLIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLES 821 (922)
Q Consensus 742 ~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~ 821 (922)
.+ ..+++|+.|++++| .++.++.+..+++|+.|++++|. +...+. .....+++|++
T Consensus 260 ~~---------~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~-------------~~l~~l~~L~~ 315 (347)
T 4fmz_A 260 AV---------KDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQ-LGNEDM-------------EVIGGLTNLTT 315 (347)
T ss_dssp GG---------TTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCGGGH-------------HHHHTCTTCSE
T ss_pred hH---------hcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCc-CCCcCh-------------hHhhccccCCE
Confidence 22 24889999999998 77888889999999999999985 444432 24567899999
Q ss_pred eecCccccccccccCCcCCCCccEEEecCCC
Q 042817 822 LKLARLPNLESVYWTPLSFSHLKEIRIFKCP 852 (922)
Q Consensus 822 L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C~ 852 (922)
|++++|+ +..++. ...+++|+.|++++|+
T Consensus 316 L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 316 LFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp EECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred EEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 9999986 555544 5678999999999985
No 7
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=7.9e-23 Score=228.79 Aligned_cols=303 Identities=16% Similarity=0.192 Sum_probs=241.8
Q ss_pred ccccceEEeeecccccccccc--cCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccC-ccccCcccCCe
Q 042817 514 KWKGVKRMSLMNNKIRNLSEP--ATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFP-PGISKLISLQY 590 (922)
Q Consensus 514 ~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~ 590 (922)
.+++++.+++.++.+..+|.. ..+++|++|++++|.+..+++..|..+++|++|+|++| .+..+| ..++++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCE
Confidence 457899999999999998874 67999999999999999998888999999999999999 677665 55899999999
Q ss_pred eeeccCCccccchh-hccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhc
Q 042817 591 LNLSSTGIRVLPEE-LKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLC 669 (922)
Q Consensus 591 L~L~~~~i~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 669 (922)
|++++|.++.+|.. ++++++|++|++++|. +..++...+.++++|++|++++|.... . .+..
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~---~~~~ 184 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH-------------V---DLSL 184 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSB-------------C---CGGG
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCc-------------c---cccc
Confidence 99999999999987 4899999999999997 466766668999999999999987321 1 2567
Q ss_pred CCCCceEEEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeecccccccCC
Q 042817 670 LNHLSVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKT 749 (922)
Q Consensus 670 L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~ 749 (922)
+++|+.|+++.+.... ......++.|.++++. +.......+++|+.|++++|.+... .++.
T Consensus 185 l~~L~~L~l~~n~l~~-------~~~~~~L~~L~l~~n~-----l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~----- 245 (390)
T 3o6n_A 185 IPSLFHANVSYNLLST-------LAIPIAVEELDASHNS-----INVVRGPVNVELTILKLQHNNLTDT--AWLL----- 245 (390)
T ss_dssp CTTCSEEECCSSCCSE-------EECCSSCSEEECCSSC-----CCEEECCCCSSCCEEECCSSCCCCC--GGGG-----
T ss_pred ccccceeecccccccc-------cCCCCcceEEECCCCe-----eeeccccccccccEEECCCCCCccc--HHHc-----
Confidence 8889999887554332 2345688999998875 2223334468999999999987653 3333
Q ss_pred CCCccCCcccEEEEecCCCCCCC--chhhccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCccceeecCcc
Q 042817 750 PETSRFHNLHRVGIVNCKSLKDI--TWLIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLESLKLARL 827 (922)
Q Consensus 750 ~~~~~l~~L~~L~L~~c~~l~~l--~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~ 827 (922)
.+++|+.|+|++| .+..+ ..+..+++|+.|+|++| .++.++. ....+|+|++|+++++
T Consensus 246 ----~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~--------------~~~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 246 ----NYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNN-RLVALNL--------------YGQPIPTLKVLDLSHN 305 (390)
T ss_dssp ----GCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECCSS-CCCEEEC--------------SSSCCTTCCEEECCSS
T ss_pred ----CCCCccEEECCCC-cCCCcChhHccccccCCEEECCCC-cCcccCc--------------ccCCCCCCCEEECCCC
Confidence 3889999999998 45544 35788999999999986 4655533 4467899999999997
Q ss_pred ccccccccCCcCCCCccEEEecCCCCCCCCCCCCCcccccceEEEcccc
Q 042817 828 PNLESVYWTPLSFSHLKEIRIFKCPRLWKLPLDSNSAKERKIVIKGEID 876 (922)
Q Consensus 828 ~~L~~l~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~l~~l~I~g~~~ 876 (922)
.+..++.....+++|+.|++++|+ ++.+|... .+.++.+.+.+++-
T Consensus 306 -~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~-~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 306 -HLLHVERNQPQFDRLENLYLDHNS-IVTLKLST-HHTLKNLTLSHNDW 351 (390)
T ss_dssp -CCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCT-TCCCSEEECCSSCE
T ss_pred -cceecCccccccCcCCEEECCCCc-cceeCchh-hccCCEEEcCCCCc
Confidence 677777666778999999999974 78888543 45689999988753
No 8
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=9.1e-23 Score=233.81 Aligned_cols=317 Identities=18% Similarity=0.279 Sum_probs=193.0
Q ss_pred ccccCCCccccccceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccC
Q 042817 505 GLTEAPGIEKWKGVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISK 584 (922)
Q Consensus 505 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~ 584 (922)
....++.+..++++++|++++|.+..+++...+++|++|++++|.+..+++ +.++++|++|++++| .+..+|. +++
T Consensus 57 ~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n-~l~~~~~-~~~ 132 (466)
T 1o6v_A 57 GIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-QITDIDP-LKN 132 (466)
T ss_dssp CCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG-GTT
T ss_pred CCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCC-CCCCChH-HcC
Confidence 445566677788888999988888888777888888999998888887776 788888999999888 7777775 888
Q ss_pred cccCCeeeeccCCccccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchH
Q 042817 585 LISLQYLNLSSTGIRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILI 664 (922)
Q Consensus 585 L~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 664 (922)
+++|++|++++|.++.+|. ++.+++|++|+++++ +..++. +.++++|++|++++|.... +
T Consensus 133 l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~--~~~~~~--~~~l~~L~~L~l~~n~l~~---------------~ 192 (466)
T 1o6v_A 133 LTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQ--VTDLKP--LANLTTLERLDISSNKVSD---------------I 192 (466)
T ss_dssp CTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEES--CCCCGG--GTTCTTCCEEECCSSCCCC---------------C
T ss_pred CCCCCEEECCCCccCCChh-hccCCcccEeecCCc--ccCchh--hccCCCCCEEECcCCcCCC---------------C
Confidence 8888888888888887763 666777777776532 233443 5666777777776665211 1
Q ss_pred HHhhcCCCCceEEEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeecccc
Q 042817 665 EELLCLNHLSVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVG 744 (922)
Q Consensus 665 ~~L~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~ 744 (922)
..+..+++|+.|+++.+....... ...+++|+.|+++++... .+ ..+..+++|+.|++++|.+..+.+ +.
T Consensus 193 ~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~--~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~ 262 (466)
T 1o6v_A 193 SVLAKLTNLESLIATNNQISDITP----LGILTNLDELSLNGNQLK--DI--GTLASLTNLTDLDLANNQISNLAP--LS 262 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCC--CC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred hhhccCCCCCEEEecCCccccccc----ccccCCCCEEECCCCCcc--cc--hhhhcCCCCCEEECCCCccccchh--hh
Confidence 124455555555554433222111 122344555555544310 11 123344444444444444333211 00
Q ss_pred c---c----------cCCCCCccCCcccEEEEecCCCCCCCchhhccCCCcEEEEeccccchhhhcccccccccccCCCC
Q 042817 745 E---I----------RKTPETSRFHNLHRVGIVNCKSLKDITWLIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNH 811 (922)
Q Consensus 745 ~---~----------~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~ 811 (922)
. + ...++...+++|+.|++++| .++.++++..+++|+.|++++|. +..++
T Consensus 263 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~--------------- 325 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNISPLAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFNN-ISDIS--------------- 325 (466)
T ss_dssp TCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSSC-CSCCG---------------
T ss_pred cCCCCCEEECCCCccCccccccCCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCCc-CCCch---------------
Confidence 0 0 00011123666777777766 45556666667777777777653 33321
Q ss_pred CCccCCccceeecCccccccccccCCcCCCCccEEEecCCCCCCCCCCCCCcccccceEEEccc
Q 042817 812 HQIPFAKLESLKLARLPNLESVYWTPLSFSHLKEIRIFKCPRLWKLPLDSNSAKERKIVIKGEI 875 (922)
Q Consensus 812 ~~~~fp~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~l~~l~I~g~~ 875 (922)
....+++|+.|.+++| .+..++ ....+++|+.|++++|+ +..++.....+.++.+.+.+++
T Consensus 326 ~~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 326 PVSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQ-ISDLTPLANLTRITQLGLNDQA 386 (466)
T ss_dssp GGGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSC-CCBCGGGTTCTTCCEEECCCEE
T ss_pred hhccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCc-cCccchhhcCCCCCEEeccCCc
Confidence 2446788888888876 455553 34567888888888875 4443333344566777777764
No 9
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=1.1e-22 Score=238.78 Aligned_cols=141 Identities=25% Similarity=0.345 Sum_probs=115.8
Q ss_pred ccccCCCccccccceEEeeeccccccccc--ccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCcc-
Q 042817 505 GLTEAPGIEKWKGVKRMSLMNNKIRNLSE--PATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPG- 581 (922)
Q Consensus 505 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~- 581 (922)
++..+|.. -.+++++|++++|.+..+++ ...+++|++|++++|.+..+++..|.++++|++|+|++| .+..+|+.
T Consensus 16 ~l~~ip~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~ 93 (549)
T 2z81_A 16 SFTSIPSG-LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSW 93 (549)
T ss_dssp CCSSCCSC-CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHH
T ss_pred cccccccc-CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHH
Confidence 44555542 23689999999999887643 478899999999999998888888899999999999999 77777665
Q ss_pred ccCcccCCeeeeccCCccc--cchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcc
Q 042817 582 ISKLISLQYLNLSSTGIRV--LPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGAL 647 (922)
Q Consensus 582 i~~L~~L~~L~L~~~~i~~--lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 647 (922)
++++++|++|++++|.++. .|..++++++|++|++++|..+..+|...+.++++|++|++++|...
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 8999999999999998884 46788999999999999998677887656889999999999988743
No 10
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=2.5e-22 Score=229.87 Aligned_cols=348 Identities=18% Similarity=0.170 Sum_probs=242.5
Q ss_pred EEEcCCccccCCCccccccceEEeeeccccccccc--ccCCCCceEEEeccCccc-ccchhhhccCCCceEEEccCCCCC
Q 042817 499 FVHAGVGLTEAPGIEKWKGVKRMSLMNNKIRNLSE--PATCPHLLTLFLQNNRLS-NITANFFQFMPSLKVLNLSNNFSL 575 (922)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~-~~~~~~~~~l~~L~~L~L~~~~~l 575 (922)
+...+.++..+|. -.+++++|++++|.+..+++ ...+++|++|++++|.+. .+++..|.++++|++|+|++| .+
T Consensus 15 ~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l 91 (455)
T 3v47_A 15 AICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QF 91 (455)
T ss_dssp EECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TT
T ss_pred cCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-cc
Confidence 3444556666776 33789999999999988743 478999999999999876 666777999999999999999 56
Q ss_pred cc-cCccccCcccCCeeeeccCCccc-cchh--hccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccc
Q 042817 576 RE-FPPGISKLISLQYLNLSSTGIRV-LPEE--LKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAE 651 (922)
Q Consensus 576 ~~-lp~~i~~L~~L~~L~L~~~~i~~-lp~~--l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~ 651 (922)
.. .|..++++++|++|++++|.++. .|.. ++.+++|++|++++|......|...+.++++|++|++++|.......
T Consensus 92 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 171 (455)
T 3v47_A 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence 55 47889999999999999999985 4554 89999999999999985444466557899999999999987432110
Q ss_pred cCcccc---------------c---C---ccchHHHhhcCCCCceEEEEEechhH-HHHHhhcccccCcceEEEEcCccc
Q 042817 652 HGSVLF---------------N---G---GEILIEELLCLNHLSVLSVCLESDQA-LRKFLSSYRLKSSTQTLRLRKLKK 709 (922)
Q Consensus 652 ~~~~~~---------------~---~---~~~~~~~L~~L~~L~~L~l~~~~~~~-~~~l~~~~~~~~~L~~L~l~~~~~ 709 (922)
...... . . .......+..+++|+.|+++.+.... ............+++.|.++++..
T Consensus 172 ~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 251 (455)
T 3v47_A 172 EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251 (455)
T ss_dssp TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTT
T ss_pred hhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccc
Confidence 000000 0 0 00000112344667777776554322 111111111235778888876642
Q ss_pred ccccc--------cccccc--cccccceeeecccCCcceeecccccccCCCCCccCCcccEEEEecCCCCCCCc--hhhc
Q 042817 710 ESESL--------RTLSLT--DMEKLRNLFIADSSFEKLQIDCVGEIRKTPETSRFHNLHRVGIVNCKSLKDIT--WLIF 777 (922)
Q Consensus 710 ~~~~~--------~~l~l~--~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~ 777 (922)
..... ....+. .+++|+.|++++|.+....+.++. .+++|+.|+|++| .+..++ .+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~---------~l~~L~~L~Ls~n-~l~~~~~~~~~~ 321 (455)
T 3v47_A 252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS---------HFTDLEQLTLAQN-EINKIDDNAFWG 321 (455)
T ss_dssp TSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTT---------TCTTCCEEECTTS-CCCEECTTTTTT
T ss_pred cccccchhhhccCcccccccccccCceEEEecCccccccchhhcc---------cCCCCCEEECCCC-cccccChhHhcC
Confidence 11111 111122 236899999999988776555554 3889999999998 455443 5788
Q ss_pred cCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCccceeecCcccccccc-ccCCcCCCCccEEEecCCCCCCC
Q 042817 778 APNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLESLKLARLPNLESV-YWTPLSFSHLKEIRIFKCPRLWK 856 (922)
Q Consensus 778 l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~l-~~~~~~~p~L~~L~i~~C~~L~~ 856 (922)
+++|+.|+|++| .+..++. .....+++|++|+|+++. +..+ +.....+++|+.|++++| +++.
T Consensus 322 l~~L~~L~Ls~N-~l~~~~~-------------~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~ 385 (455)
T 3v47_A 322 LTHLLKLNLSQN-FLGSIDS-------------RMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTN-QLKS 385 (455)
T ss_dssp CTTCCEEECCSS-CCCEECG-------------GGGTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSC
T ss_pred cccCCEEECCCC-ccCCcCh-------------hHhcCcccCCEEECCCCc-ccccChhhccccccccEEECCCC-cccc
Confidence 999999999987 4555533 255678999999999974 4555 455667999999999995 7888
Q ss_pred CCCCC--CcccccceEEEccc
Q 042817 857 LPLDS--NSAKERKIVIKGEI 875 (922)
Q Consensus 857 lp~~~--~~~~l~~l~I~g~~ 875 (922)
+|... ..+.++.+.+.+++
T Consensus 386 ~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 386 VPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CCTTTTTTCTTCCEEECCSSC
T ss_pred CCHhHhccCCcccEEEccCCC
Confidence 88743 34567889988654
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=7.6e-23 Score=246.96 Aligned_cols=325 Identities=12% Similarity=0.137 Sum_probs=227.4
Q ss_pred CccccccceEEeeecccccc------------------cccc-c--CCCCceEEEeccCcccccchhhhccCCCceEEEc
Q 042817 511 GIEKWKGVKRMSLMNNKIRN------------------LSEP-A--TCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNL 569 (922)
Q Consensus 511 ~~~~~~~l~~l~l~~~~~~~------------------~~~~-~--~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L 569 (922)
.+..+++++.|++++|.+.. +|.. . .+++|++|++++|.+....+..|.++++|++|+|
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC
Confidence 46778899999999999887 6655 3 7899999999999866665566899999999999
Q ss_pred cCCCCCc--ccCccccCcc-------cCCeeeeccCCccccch--hhccCCCCCEEeCCCCccccccChhhhCCCCCCCE
Q 042817 570 SNNFSLR--EFPPGISKLI-------SLQYLNLSSTGIRVLPE--ELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRV 638 (922)
Q Consensus 570 ~~~~~l~--~lp~~i~~L~-------~L~~L~L~~~~i~~lp~--~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~ 638 (922)
++|..++ .+|..++++. +|++|++++|.++.+|. .++++++|++|++++|.. ..+| . ++++++|++
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l-~~lp-~-~~~L~~L~~ 599 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV-RHLE-A-FGTNVKLTD 599 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCC-CBCC-C-CCTTSEESE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCc-ccch-h-hcCCCcceE
Confidence 9994255 5888887776 99999999999999998 899999999999999974 5888 3 899999999
Q ss_pred EEeecCCcccccccCcccccCccchHHHhhcCCC-CceEEEEEechhHHHHHhhccccc--CcceEEEEcCccccc----
Q 042817 639 LRMLDCGALERAEHGSVLFNGGEILIEELLCLNH-LSVLSVCLESDQALRKFLSSYRLK--SSTQTLRLRKLKKES---- 711 (922)
Q Consensus 639 L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~-L~~L~l~~~~~~~~~~l~~~~~~~--~~L~~L~l~~~~~~~---- 711 (922)
|++++|... ..+..+..+++ |+.|+++.+....++ ...... .+|+.|+++++....
T Consensus 600 L~Ls~N~l~--------------~lp~~l~~l~~~L~~L~Ls~N~L~~lp---~~~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 600 LKLDYNQIE--------------EIPEDFCAFTDQVEGLGFSHNKLKYIP---NIFNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp EECCSSCCS--------------CCCTTSCEECTTCCEEECCSSCCCSCC---SCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred EECcCCccc--------------cchHHHhhccccCCEEECcCCCCCcCc---hhhhccccCCCCEEECcCCcCCCcccc
Confidence 999988732 12334566666 777777655443222 221112 125555555543210
Q ss_pred -----------------------ccccccccccccccceeeecccCCcceeecccccccCCCCCccCCcccEEEEecCCC
Q 042817 712 -----------------------ESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPETSRFHNLHRVGIVNCKS 768 (922)
Q Consensus 712 -----------------------~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~ 768 (922)
..+....+..+++|+.|++++|.+..++...+... .+....+++|+.|+|++| .
T Consensus 663 l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~--~~~l~nl~~L~~L~Ls~N-~ 739 (876)
T 4ecn_A 663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPK--DGNYKNTYLLTTIDLRFN-K 739 (876)
T ss_dssp CSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCT--TSCCTTGGGCCEEECCSS-C
T ss_pred chhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccc--cccccccCCccEEECCCC-C
Confidence 01100012245666666666665554432222110 001123458999999988 5
Q ss_pred CCCCch-hh--ccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCccceeecCcc------ccccccccCCcC
Q 042817 769 LKDITW-LI--FAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLESLKLARL------PNLESVYWTPLS 839 (922)
Q Consensus 769 l~~l~~-l~--~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~------~~L~~l~~~~~~ 839 (922)
++.+|. +. .+++|+.|+|++| .+..++. ....+++|+.|.|+++ .....+|.....
T Consensus 740 L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~--------------~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~ 804 (876)
T 4ecn_A 740 LTSLSDDFRATTLPYLSNMDVSYN-CFSSFPT--------------QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITT 804 (876)
T ss_dssp CCCCCGGGSTTTCTTCCEEECCSS-CCSSCCC--------------GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGG
T ss_pred CccchHHhhhccCCCcCEEEeCCC-CCCccch--------------hhhcCCCCCEEECCCCCCcccccccccChHHHhc
Confidence 666664 44 7899999999886 4555543 4567899999999763 334556666677
Q ss_pred CCCccEEEecCCCCCCCCCCCCCcccccceEEEccc
Q 042817 840 FSHLKEIRIFKCPRLWKLPLDSNSAKERKIVIKGEI 875 (922)
Q Consensus 840 ~p~L~~L~i~~C~~L~~lp~~~~~~~l~~l~I~g~~ 875 (922)
+++|+.|++++|. +..+|.... +.++.+++++++
T Consensus 805 L~~L~~L~Ls~N~-L~~Ip~~l~-~~L~~LdLs~N~ 838 (876)
T 4ecn_A 805 CPSLIQLQIGSND-IRKVDEKLT-PQLYILDIADNP 838 (876)
T ss_dssp CSSCCEEECCSSC-CCBCCSCCC-SSSCEEECCSCT
T ss_pred CCCCCEEECCCCC-CCccCHhhc-CCCCEEECCCCC
Confidence 9999999999985 588998754 578999999886
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=5.7e-22 Score=228.22 Aligned_cols=290 Identities=22% Similarity=0.301 Sum_probs=155.6
Q ss_pred ccceEEeeeccccccccc--ccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCcc-ccCcccCCeee
Q 042817 516 KGVKRMSLMNNKIRNLSE--PATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPG-ISKLISLQYLN 592 (922)
Q Consensus 516 ~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 592 (922)
.+++.|++++|.+..+++ ...+++|++|++++|.+..+.+..|.++++|++|+|++| .+..+|.. ++++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEE
Confidence 355556666655555432 245555666666666555555555555666666666655 45555432 45555666666
Q ss_pred eccCCcccc-chhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCC
Q 042817 593 LSSTGIRVL-PEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLN 671 (922)
Q Consensus 593 L~~~~i~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 671 (922)
+++|.+..+ |..+..+++|++|++++|. +..++...+.++++|++|++++|... ......+..++
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~-------------~~~~~~l~~l~ 176 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLT-------------SIPTEALSHLH 176 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCS-------------SCCHHHHTTCT
T ss_pred CCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCc-------------ccChhHhcccC
Confidence 666555544 3345555566666665554 23333333555556666666555411 11233344555
Q ss_pred CCceEEEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeecccccccCCCC
Q 042817 672 HLSVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPE 751 (922)
Q Consensus 672 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~ 751 (922)
+|+.|++. ++.. ..+....+..+++|+.|++++|......+....
T Consensus 177 ~L~~L~l~--------------------------~n~i--~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~------- 221 (477)
T 2id5_A 177 GLIVLRLR--------------------------HLNI--NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL------- 221 (477)
T ss_dssp TCCEEEEE--------------------------SCCC--CEECTTCSCSCTTCCEEEEECCTTCCEECTTTT-------
T ss_pred CCcEEeCC--------------------------CCcC--cEeChhhcccCcccceeeCCCCccccccCcccc-------
Confidence 55555554 4321 111222355667777777777655442111111
Q ss_pred CccCCcccEEEEecCCCCCCCc--hhhccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCccceeecCcccc
Q 042817 752 TSRFHNLHRVGIVNCKSLKDIT--WLIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLESLKLARLPN 829 (922)
Q Consensus 752 ~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~ 829 (922)
...+|+.|+|++| .++.++ .+..+++|+.|+|+++. +..++. ..+..+++|+.|.|+++ .
T Consensus 222 --~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-------------~~~~~l~~L~~L~L~~n-~ 283 (477)
T 2id5_A 222 --YGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEG-------------SMLHELLRLQEIQLVGG-Q 283 (477)
T ss_dssp --TTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEECT-------------TSCTTCTTCCEEECCSS-C
T ss_pred --cCccccEEECcCC-cccccCHHHhcCccccCeeECCCCc-CCccCh-------------hhccccccCCEEECCCC-c
Confidence 1346777777776 455555 35667777777777653 444432 24455677777777765 3
Q ss_pred cccc-ccCCcCCCCccEEEecCCCCCCCCCCCC--CcccccceEEEcc
Q 042817 830 LESV-YWTPLSFSHLKEIRIFKCPRLWKLPLDS--NSAKERKIVIKGE 874 (922)
Q Consensus 830 L~~l-~~~~~~~p~L~~L~i~~C~~L~~lp~~~--~~~~l~~l~I~g~ 874 (922)
+..+ +.....+++|+.|++++| +++.+|... ....++.+.+.++
T Consensus 284 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 284 LAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp CSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSS
T ss_pred cceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCC
Confidence 3433 333445677777777775 566666432 2244566666543
No 13
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=3e-22 Score=229.46 Aligned_cols=315 Identities=15% Similarity=0.182 Sum_probs=219.4
Q ss_pred cccccceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeee
Q 042817 513 EKWKGVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLN 592 (922)
Q Consensus 513 ~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 592 (922)
..+++++.|++.++.+..++....+++|++|++++|.+..+++ +.++++|++|++++| .+..+|. ++++++|++|+
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLT 118 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEE
T ss_pred hHhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCC-ccccChh-hcCCCCCCEEE
Confidence 3467899999999999999888899999999999999998887 899999999999999 7888877 99999999999
Q ss_pred eccCCccccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCC
Q 042817 593 LSSTGIRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNH 672 (922)
Q Consensus 593 L~~~~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~ 672 (922)
+++|.++.+|. +.++++|++|++++|. +..+|. +.++++|++|++.++. . ....+..+++
T Consensus 119 L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~~~-~---------------~~~~~~~l~~ 178 (466)
T 1o6v_A 119 LFNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLSFGNQV-T---------------DLKPLANLTT 178 (466)
T ss_dssp CCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG--GTTCTTCSEEEEEESC-C---------------CCGGGTTCTT
T ss_pred CCCCCCCCChH-HcCCCCCCEEECCCCc-cCCChh--hccCCcccEeecCCcc-c---------------CchhhccCCC
Confidence 99999999986 8999999999999997 567765 8999999999997432 1 1223788999
Q ss_pred CceEEEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeecccccccCCCCC
Q 042817 673 LSVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPET 752 (922)
Q Consensus 673 L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~ 752 (922)
|+.|+++.+....+. ....+++|+.|.++++.. .. ...+..+++|+.|++++|.+..++ .+.
T Consensus 179 L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l--~~--~~~~~~l~~L~~L~l~~n~l~~~~--~l~-------- 240 (466)
T 1o6v_A 179 LERLDISSNKVSDIS----VLAKLTNLESLIATNNQI--SD--ITPLGILTNLDELSLNGNQLKDIG--TLA-------- 240 (466)
T ss_dssp CCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCC--CC--CGGGGGCTTCCEEECCSSCCCCCG--GGG--------
T ss_pred CCEEECcCCcCCCCh----hhccCCCCCEEEecCCcc--cc--cccccccCCCCEEECCCCCcccch--hhh--------
Confidence 999999877654432 234567999999998862 11 223677899999999999876541 222
Q ss_pred ccCCcccEEEEecCCCCCCCchhhccCCCcEEEEeccccchhhhccccccccc-------ccCCCCCCccCCccceeecC
Q 042817 753 SRFHNLHRVGIVNCKSLKDITWLIFAPNLRILEISYCFEMTEIISQAKVDEFG-------ATAGNHHQIPFAKLESLKLA 825 (922)
Q Consensus 753 ~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~-------~~~~~~~~~~fp~L~~L~L~ 825 (922)
.+++|+.|++++| .+..++++..+++|+.|++++|. +..++......... ...+......+++|+.|+++
T Consensus 241 -~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~ 317 (466)
T 1o6v_A 241 -SLTNLTDLDLANN-QISNLAPLSGLTKLTELKLGANQ-ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLY 317 (466)
T ss_dssp -GCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECC
T ss_pred -cCCCCCEEECCCC-ccccchhhhcCCCCCEEECCCCc-cCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECc
Confidence 2556666666665 44445455556666666666542 32221100000000 00000123456666777776
Q ss_pred ccccccccccCCcCCCCccEEEecCCCCCCCCCCCCCcccccceEEEccc
Q 042817 826 RLPNLESVYWTPLSFSHLKEIRIFKCPRLWKLPLDSNSAKERKIVIKGEI 875 (922)
Q Consensus 826 ~~~~L~~l~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~l~~l~I~g~~ 875 (922)
++. +..++. ...+++|+.|++.+| +++.+|.....+.++.+.+.+|+
T Consensus 318 ~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 318 FNN-ISDISP-VSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp SSC-CSCCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC
T ss_pred CCc-CCCchh-hccCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCCc
Confidence 653 333332 345677777777766 55655544444556666666553
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=5.7e-23 Score=244.17 Aligned_cols=327 Identities=11% Similarity=0.132 Sum_probs=213.6
Q ss_pred CccccccceEEeeecccccc------------------cccc-c--CCCCceEEEeccCcccccchhhhccCCCceEEEc
Q 042817 511 GIEKWKGVKRMSLMNNKIRN------------------LSEP-A--TCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNL 569 (922)
Q Consensus 511 ~~~~~~~l~~l~l~~~~~~~------------------~~~~-~--~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L 569 (922)
.+..+++++.|++++|.+.. +|.. . .+++|++|++++|.+....+..|+++++|++|+|
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence 35667788888888888877 6654 4 6888888888888766655566888888888888
Q ss_pred cCCCCCc--ccCccccCc------ccCCeeeeccCCccccch--hhccCCCCCEEeCCCCccccccChhhhCCCCCCCEE
Q 042817 570 SNNFSLR--EFPPGISKL------ISLQYLNLSSTGIRVLPE--ELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVL 639 (922)
Q Consensus 570 ~~~~~l~--~lp~~i~~L------~~L~~L~L~~~~i~~lp~--~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L 639 (922)
++|..++ .+|..++.+ ++|++|++++|.++.+|. .++++++|++|++++|...+.+| . ++++++|++|
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L 358 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASL 358 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEE
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEE
Confidence 8884255 588777776 888888888888888887 78888888888888887544777 3 7788888888
Q ss_pred EeecCCcccccccCcccccCccchHHHhhcCCC-CceEEEEEechhHHHHHhhccccc--CcceEEEEcCcccc------
Q 042817 640 RMLDCGALERAEHGSVLFNGGEILIEELLCLNH-LSVLSVCLESDQALRKFLSSYRLK--SSTQTLRLRKLKKE------ 710 (922)
Q Consensus 640 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~-L~~L~l~~~~~~~~~~l~~~~~~~--~~L~~L~l~~~~~~------ 710 (922)
++++|... ..+..+..+++ |+.|+++.+....++ ...... .+|+.|+++++...
T Consensus 359 ~L~~N~l~--------------~lp~~l~~l~~~L~~L~Ls~N~l~~lp---~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 421 (636)
T 4eco_A 359 NLAYNQIT--------------EIPANFCGFTEQVENLSFAHNKLKYIP---NIFDAKSVSVMSAIDFSYNEIGSVDGKN 421 (636)
T ss_dssp ECCSSEEE--------------ECCTTSEEECTTCCEEECCSSCCSSCC---SCCCTTCSSCEEEEECCSSCTTTTTTCS
T ss_pred ECCCCccc--------------cccHhhhhhcccCcEEEccCCcCcccc---hhhhhcccCccCEEECcCCcCCCcchhh
Confidence 88877522 12233455555 666665544433221 111111 13444444444310
Q ss_pred -----------------------cccccccccccccccceeeecccCCcceeecccccccCCCCCccCCcccEEEEecCC
Q 042817 711 -----------------------SESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPETSRFHNLHRVGIVNCK 767 (922)
Q Consensus 711 -----------------------~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~ 767 (922)
...+....+..+++|+.|++++|.+..++...+... .+....+++|+.|+|++|
T Consensus 422 l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~--~~~~~~l~~L~~L~Ls~N- 498 (636)
T 4eco_A 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE--NENFKNTYLLTSIDLRFN- 498 (636)
T ss_dssp SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEET--TEECTTGGGCCEEECCSS-
T ss_pred hcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccc--cccccccCCccEEECcCC-
Confidence 001111112335666666666666554433322210 000112338999999988
Q ss_pred CCCCCch-hh--ccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCccceeecCc------cccccccccCCc
Q 042817 768 SLKDITW-LI--FAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLESLKLAR------LPNLESVYWTPL 838 (922)
Q Consensus 768 ~l~~l~~-l~--~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~------~~~L~~l~~~~~ 838 (922)
.++.+|. +. .+++|+.|+|++| .++.++. ....+++|+.|+|++ +.....+|....
T Consensus 499 ~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~--------------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~ 563 (636)
T 4eco_A 499 KLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPT--------------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563 (636)
T ss_dssp CCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCC--------------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGG
T ss_pred cCCccChhhhhccCCCcCEEECCCC-CCCCcCh--------------hhhcCCCCCEEECCCCcccccCcccccChHHHh
Confidence 5556654 44 7899999999886 4555543 455689999999954 333556666677
Q ss_pred CCCCccEEEecCCCCCCCCCCCCCcccccceEEEcccc
Q 042817 839 SFSHLKEIRIFKCPRLWKLPLDSNSAKERKIVIKGEID 876 (922)
Q Consensus 839 ~~p~L~~L~i~~C~~L~~lp~~~~~~~l~~l~I~g~~~ 876 (922)
.+++|+.|++++|. ++.+|.... +.++.+++++++-
T Consensus 564 ~l~~L~~L~Ls~N~-l~~ip~~~~-~~L~~L~Ls~N~l 599 (636)
T 4eco_A 564 LCPSLTQLQIGSND-IRKVNEKIT-PNISVLDIKDNPN 599 (636)
T ss_dssp GCSSCCEEECCSSC-CCBCCSCCC-TTCCEEECCSCTT
T ss_pred cCCCCCEEECCCCc-CCccCHhHh-CcCCEEECcCCCC
Confidence 79999999999975 588998754 6789999998854
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=3.6e-22 Score=235.93 Aligned_cols=302 Identities=16% Similarity=0.207 Sum_probs=236.9
Q ss_pred ccccceEEeeecccccccccc--cCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCc-cccCcccCCe
Q 042817 514 KWKGVKRMSLMNNKIRNLSEP--ATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPP-GISKLISLQY 590 (922)
Q Consensus 514 ~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~ 590 (922)
.+.+++.+++.++.+..+|.. ..+++|++|++++|.+..+++..|..+++|++|+|++| .+..+|+ .++++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCE
Confidence 457889999999999988874 67899999999999999999888999999999999999 6776665 5799999999
Q ss_pred eeeccCCccccchh-hccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhc
Q 042817 591 LNLSSTGIRVLPEE-LKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLC 669 (922)
Q Consensus 591 L~L~~~~i~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 669 (922)
|+|++|.++.+|.. ++++++|++|++++|. +..+|+..++++++|++|++++|.... . .+..
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-------------~---~~~~ 190 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH-------------V---DLSL 190 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSB-------------C---CGGG
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCC-------------c---Chhh
Confidence 99999999999987 5899999999999997 466666568999999999999987321 1 2566
Q ss_pred CCCCceEEEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeecccccccCC
Q 042817 670 LNHLSVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKT 749 (922)
Q Consensus 670 L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~ 749 (922)
+++|+.|+++.+.... ......|+.|+++++. +..+.....++|+.|++++|.+... .++.
T Consensus 191 l~~L~~L~l~~n~l~~-------l~~~~~L~~L~ls~n~-----l~~~~~~~~~~L~~L~L~~n~l~~~--~~l~----- 251 (597)
T 3oja_B 191 IPSLFHANVSYNLLST-------LAIPIAVEELDASHNS-----INVVRGPVNVELTILKLQHNNLTDT--AWLL----- 251 (597)
T ss_dssp CTTCSEEECCSSCCSE-------EECCTTCSEEECCSSC-----CCEEECSCCSCCCEEECCSSCCCCC--GGGG-----
T ss_pred hhhhhhhhcccCcccc-------ccCCchhheeeccCCc-----ccccccccCCCCCEEECCCCCCCCC--hhhc-----
Confidence 7889999887554332 2345678899988875 2222333347899999999987653 3333
Q ss_pred CCCccCCcccEEEEecCCCCCCC--chhhccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCccceeecCcc
Q 042817 750 PETSRFHNLHRVGIVNCKSLKDI--TWLIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLESLKLARL 827 (922)
Q Consensus 750 ~~~~~l~~L~~L~L~~c~~l~~l--~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~ 827 (922)
.+++|+.|+|++| .+..+ ..++.+++|+.|+|++| .+..++. ....+|+|+.|+|+++
T Consensus 252 ----~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~--------------~~~~l~~L~~L~Ls~N 311 (597)
T 3oja_B 252 ----NYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNN-RLVALNL--------------YGQPIPTLKVLDLSHN 311 (597)
T ss_dssp ----GCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECTTS-CCCEEEC--------------SSSCCTTCCEEECCSS
T ss_pred ----cCCCCCEEECCCC-ccCCCCHHHhcCccCCCEEECCCC-CCCCCCc--------------ccccCCCCcEEECCCC
Confidence 3889999999998 45544 35788999999999986 4655543 4456899999999986
Q ss_pred ccccccccCCcCCCCccEEEecCCCCCCCCCCCCCcccccceEEEccc
Q 042817 828 PNLESVYWTPLSFSHLKEIRIFKCPRLWKLPLDSNSAKERKIVIKGEI 875 (922)
Q Consensus 828 ~~L~~l~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~l~~l~I~g~~ 875 (922)
.+..++.....+++|+.|++++| .++.+|... .+.++.+.+.+++
T Consensus 312 -~l~~i~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~L~~L~l~~N~ 356 (597)
T 3oja_B 312 -HLLHVERNQPQFDRLENLYLDHN-SIVTLKLST-HHTLKNLTLSHND 356 (597)
T ss_dssp -CCCCCGGGHHHHTTCSEEECCSS-CCCCCCCCT-TCCCSEEECCSSC
T ss_pred -CCCccCcccccCCCCCEEECCCC-CCCCcChhh-cCCCCEEEeeCCC
Confidence 56677766677899999999997 477777544 4567888888765
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=5.6e-22 Score=235.74 Aligned_cols=143 Identities=22% Similarity=0.207 Sum_probs=110.9
Q ss_pred EcCCccccCCCccccccceEEeeeccccccccc--ccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCccc
Q 042817 501 HAGVGLTEAPGIEKWKGVKRMSLMNNKIRNLSE--PATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREF 578 (922)
Q Consensus 501 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~l 578 (922)
..+.++..+|.. -.+++++|++++|.+..+++ ...+++|++|++++|.+..+++..|.++++|++|+|++| .+..+
T Consensus 18 c~~~~l~~ip~~-~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~ 95 (606)
T 3vq2_A 18 CMDQKLSKVPDD-IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSF 95 (606)
T ss_dssp CTTSCCSSCCTT-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCCC
T ss_pred ccCCCcccCCCC-CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-ccccc
Confidence 344455555542 23678888888888887765 467888888888888888887777888888888888888 56665
Q ss_pred -CccccCcccCCeeeeccCCccccc-hhhccCCCCCEEeCCCCcccc-ccChhhhCCCCCCCEEEeecCCc
Q 042817 579 -PPGISKLISLQYLNLSSTGIRVLP-EELKALKDLSYLNMERTSFVR-RIPRQLISNFPLLRVLRMLDCGA 646 (922)
Q Consensus 579 -p~~i~~L~~L~~L~L~~~~i~~lp-~~l~~l~~L~~L~l~~~~~l~-~lp~~~i~~l~~L~~L~l~~~~~ 646 (922)
|..++++++|++|++++|.++.+| ..++++++|++|++++|.... .+|.. ++++++|++|++++|..
T Consensus 96 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 96 SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCC
T ss_pred ChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcc
Confidence 778888888888888888888776 568888888888888887433 46765 78888888888888753
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=8.1e-22 Score=226.96 Aligned_cols=275 Identities=19% Similarity=0.218 Sum_probs=214.0
Q ss_pred CccccccceEEeeeccccccccc--ccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcc-cCccccCccc
Q 042817 511 GIEKWKGVKRMSLMNNKIRNLSE--PATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLRE-FPPGISKLIS 587 (922)
Q Consensus 511 ~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~-lp~~i~~L~~ 587 (922)
.+..+++++.|++++|.+..+.+ ...+++|++|++++|.+..+++..|.++++|++|+|++| .+.. .|..+..+++
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~ 129 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYN 129 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTS-CCCEECTTTTTTCTT
T ss_pred HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCC-ccccCChhHcccccc
Confidence 46778999999999999988743 478999999999999999999988999999999999999 5555 5678999999
Q ss_pred CCeeeeccCCcccc-chhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHH
Q 042817 588 LQYLNLSSTGIRVL-PEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEE 666 (922)
Q Consensus 588 L~~L~L~~~~i~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (922)
|++|++++|.++.+ |..+..+++|++|++++|. +..+|...+.++++|+.|++.+|.... .....
T Consensus 130 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~-------------~~~~~ 195 (477)
T 2id5_A 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINA-------------IRDYS 195 (477)
T ss_dssp CCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCCE-------------ECTTC
T ss_pred CCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCcE-------------eChhh
Confidence 99999999999876 4579999999999999997 678887779999999999999987322 22345
Q ss_pred hhcCCCCceEEEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeecccccc
Q 042817 667 LLCLNHLSVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEI 746 (922)
Q Consensus 667 L~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~ 746 (922)
+..+++|+.|+++.+.... .+........+|+.|+++++.. ..+....+..+++|+.|++++|.+..+....+.
T Consensus 196 ~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-- 269 (477)
T 2id5_A 196 FKRLYRLKVLEISHWPYLD--TMTPNCLYGLNLTSLSITHCNL--TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH-- 269 (477)
T ss_dssp SCSCTTCCEEEEECCTTCC--EECTTTTTTCCCSEEEEESSCC--CSCCHHHHTTCTTCCEEECCSSCCCEECTTSCT--
T ss_pred cccCcccceeeCCCCcccc--ccCcccccCccccEEECcCCcc--cccCHHHhcCccccCeeECCCCcCCccChhhcc--
Confidence 6788999999998643211 1111112234789999988752 222222367889999999999988776555444
Q ss_pred cCCCCCccCCcccEEEEecCCCCCCCc--hhhccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCccceeec
Q 042817 747 RKTPETSRFHNLHRVGIVNCKSLKDIT--WLIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLESLKL 824 (922)
Q Consensus 747 ~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L 824 (922)
.+++|+.|+|++| .+..++ .+..+++|+.|+|++| .++.++. ..+..+++|+.|+|
T Consensus 270 -------~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-------------~~~~~l~~L~~L~l 327 (477)
T 2id5_A 270 -------ELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEE-------------SVFHSVGNLETLIL 327 (477)
T ss_dssp -------TCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS-CCSCCCG-------------GGBSCGGGCCEEEC
T ss_pred -------ccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC-cCceeCH-------------hHcCCCcccCEEEc
Confidence 3789999999988 455442 4778899999999986 5666544 24566789999999
Q ss_pred Cccc
Q 042817 825 ARLP 828 (922)
Q Consensus 825 ~~~~ 828 (922)
++++
T Consensus 328 ~~N~ 331 (477)
T 2id5_A 328 DSNP 331 (477)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8765
No 18
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=5.8e-22 Score=221.75 Aligned_cols=285 Identities=18% Similarity=0.242 Sum_probs=230.3
Q ss_pred cCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCc-cccCcccCCeeeeccCCccccch-hhccCCCCC
Q 042817 535 ATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPP-GISKLISLQYLNLSSTGIRVLPE-ELKALKDLS 612 (922)
Q Consensus 535 ~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~lp~-~l~~l~~L~ 612 (922)
..+++++.|+++++.+..+|+..|..+++|++|+|++| .+..+|. .++.+++|++|++++|.++.+|. .++++++|+
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 45789999999999999999999999999999999999 7777664 89999999999999999998864 589999999
Q ss_pred EEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCceEEEEEechhHHHHHhhc
Q 042817 613 YLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSVLSVCLESDQALRKFLSS 692 (922)
Q Consensus 613 ~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~l~~~ 692 (922)
+|++++|. +..+|...++++++|++|++++|... ......+..+++|+.|+++.+..... .
T Consensus 121 ~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~-------------~~~~~~~~~l~~L~~L~l~~n~l~~~-----~ 181 (390)
T 3o6n_A 121 VLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLE-------------RIEDDTFQATTSLQNLQLSSNRLTHV-----D 181 (390)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC-------------BCCTTTTSSCTTCCEEECCSSCCSBC-----C
T ss_pred EEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccC-------------ccChhhccCCCCCCEEECCCCcCCcc-----c
Confidence 99999997 67899887799999999999998732 12334577899999999987655432 1
Q ss_pred ccccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeecccccccCCCCCccCCcccEEEEecCCCCCCC
Q 042817 693 YRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPETSRFHNLHRVGIVNCKSLKDI 772 (922)
Q Consensus 693 ~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l 772 (922)
....++|+.|.++++. +. .+...++|+.|++++|.+..++.. .+++|+.|++++| .++.+
T Consensus 182 ~~~l~~L~~L~l~~n~-----l~--~~~~~~~L~~L~l~~n~l~~~~~~------------~~~~L~~L~l~~n-~l~~~ 241 (390)
T 3o6n_A 182 LSLIPSLFHANVSYNL-----LS--TLAIPIAVEELDASHNSINVVRGP------------VNVELTILKLQHN-NLTDT 241 (390)
T ss_dssp GGGCTTCSEEECCSSC-----CS--EEECCSSCSEEECCSSCCCEEECC------------CCSSCCEEECCSS-CCCCC
T ss_pred cccccccceeeccccc-----cc--ccCCCCcceEEECCCCeeeecccc------------ccccccEEECCCC-CCccc
Confidence 2345688999998775 11 234557899999999988765322 2679999999998 67778
Q ss_pred chhhccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCccceeecCccccccccccCCcCCCCccEEEecCCC
Q 042817 773 TWLIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLESLKLARLPNLESVYWTPLSFSHLKEIRIFKCP 852 (922)
Q Consensus 773 ~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C~ 852 (922)
+++..+++|+.|+++++ .++.++. .....+++|++|.++++ .+..++.....+|+|+.|++++|
T Consensus 242 ~~l~~l~~L~~L~Ls~n-~l~~~~~-------------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n- 305 (390)
T 3o6n_A 242 AWLLNYPGLVEVDLSYN-ELEKIMY-------------HPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN- 305 (390)
T ss_dssp GGGGGCTTCSEEECCSS-CCCEEES-------------GGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-
T ss_pred HHHcCCCCccEEECCCC-cCCCcCh-------------hHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-
Confidence 89999999999999997 4555433 25667899999999985 67788777778999999999998
Q ss_pred CCCCCCCCCC-cccccceEEEccc
Q 042817 853 RLWKLPLDSN-SAKERKIVIKGEI 875 (922)
Q Consensus 853 ~L~~lp~~~~-~~~l~~l~I~g~~ 875 (922)
+++.+|.... .+.++.+.+.+++
T Consensus 306 ~l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 306 HLLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp CCCCCGGGHHHHTTCSEEECCSSC
T ss_pred cceecCccccccCcCCEEECCCCc
Confidence 6888875432 3567888888774
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=1.8e-21 Score=229.74 Aligned_cols=141 Identities=24% Similarity=0.292 Sum_probs=92.2
Q ss_pred cCCccccCCCccccccceEEeeeccccccccc--ccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccC
Q 042817 502 AGVGLTEAPGIEKWKGVKRMSLMNNKIRNLSE--PATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFP 579 (922)
Q Consensus 502 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp 579 (922)
.+.++..+|. .-.+++++|++++|.+..++. ...+++|++|++++|.+..+++..|.++++|++|+|++| .+..+|
T Consensus 15 ~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~ 92 (570)
T 2z63_A 15 MELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLA 92 (570)
T ss_dssp CSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEEC
T ss_pred CCCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccC
Confidence 3344455553 123467777777777766543 356777777777777777776666777777777777777 555544
Q ss_pred -ccccCcccCCeeeeccCCccccch-hhccCCCCCEEeCCCCcccc-ccChhhhCCCCCCCEEEeecCC
Q 042817 580 -PGISKLISLQYLNLSSTGIRVLPE-ELKALKDLSYLNMERTSFVR-RIPRQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 580 -~~i~~L~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~l~~~~~l~-~lp~~~i~~l~~L~~L~l~~~~ 645 (922)
..++++++|++|++++|.++.+|. .++++++|++|++++|.... .+|.. ++++++|++|++++|.
T Consensus 93 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNK 160 (570)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSC
T ss_pred HhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCc
Confidence 567777777777777777776664 46777777777777775322 24554 6677777777776664
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=3.8e-21 Score=224.03 Aligned_cols=351 Identities=16% Similarity=0.180 Sum_probs=206.3
Q ss_pred CCccccCCCccccccceEEeeeccccccccc--ccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCc
Q 042817 503 GVGLTEAPGIEKWKGVKRMSLMNNKIRNLSE--PATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPP 580 (922)
Q Consensus 503 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~ 580 (922)
+.++..+|..- .+++++|++++|.+..+++ ...+++|++|++++|.+..+++..|.++++|++|+|++| .++.+|.
T Consensus 9 ~n~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~ 86 (520)
T 2z7x_B 9 KNGLIHVPKDL-SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISC 86 (520)
T ss_dssp TSCCSSCCCSC-CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEEC
T ss_pred CCCcccccccc-cccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCc
Confidence 33444555422 2789999999998887754 477889999999999888887777889999999999998 7888887
Q ss_pred cccCcccCCeeeeccCCccc--cchhhccCCCCCEEeCCCCccccccChhhhCCCCCC--CEEEeecCCc--ccccccCc
Q 042817 581 GISKLISLQYLNLSSTGIRV--LPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLL--RVLRMLDCGA--LERAEHGS 654 (922)
Q Consensus 581 ~i~~L~~L~~L~L~~~~i~~--lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L--~~L~l~~~~~--~~~~~~~~ 654 (922)
. .+++|++|++++|.++. +|..++++++|++|++++|.. .. ..+..+++| ++|++.+|.. ........
T Consensus 87 ~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l-~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l 160 (520)
T 2z7x_B 87 H--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL-EK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGL 160 (520)
T ss_dssp C--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSC-CG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTT
T ss_pred c--ccCCccEEeccCCccccccchhhhccCCcceEEEecCccc-ch---hhccccccceeeEEEeecccccccccccccc
Confidence 6 88999999999998885 578899999999999998874 33 226677777 9999988864 11110000
Q ss_pred ccccC-------------------------------------------ccchHHHhhcCCCCceEEEEEechhH--HHHH
Q 042817 655 VLFNG-------------------------------------------GEILIEELLCLNHLSVLSVCLESDQA--LRKF 689 (922)
Q Consensus 655 ~~~~~-------------------------------------------~~~~~~~L~~L~~L~~L~l~~~~~~~--~~~l 689 (922)
..... ....+..+..+++|+.|++..+.... +..+
T Consensus 161 ~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~ 240 (520)
T 2z7x_B 161 QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRI 240 (520)
T ss_dssp TTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHH
T ss_pred cccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHH
Confidence 00000 00012234555666666665443221 1111
Q ss_pred hhcccccCcceEEEEcCccccc---cc--------cc-----------------------------c----------cc-
Q 042817 690 LSSYRLKSSTQTLRLRKLKKES---ES--------LR-----------------------------T----------LS- 718 (922)
Q Consensus 690 ~~~~~~~~~L~~L~l~~~~~~~---~~--------~~-----------------------------~----------l~- 718 (922)
.... ..++|+.|.++++.... .. +. . ..
T Consensus 241 ~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 319 (520)
T 2z7x_B 241 LQLV-WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC 319 (520)
T ss_dssp HHHH-HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCC
T ss_pred HHHh-hhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccc
Confidence 1111 12355556555543110 00 00 0 00
Q ss_pred cccccccceeeecccCCcceeecccccccCCCCCccCCcccEEEEecCCCCCCCc----hhhccCCCcEEEEeccccchh
Q 042817 719 LTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPETSRFHNLHRVGIVNCKSLKDIT----WLIFAPNLRILEISYCFEMTE 794 (922)
Q Consensus 719 l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~----~l~~l~~L~~L~L~~c~~l~~ 794 (922)
...+++|+.|++++|.+....+.++ ..+++|+.|++++| .++.++ .++.+++|+.|++++|. +..
T Consensus 320 ~~~l~~L~~L~Ls~n~l~~~~~~~~---------~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~ 388 (520)
T 2z7x_B 320 PSKISPFLHLDFSNNLLTDTVFENC---------GHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNS-VSY 388 (520)
T ss_dssp CSSCCCCCEEECCSSCCCTTTTTTC---------CCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSC-CBC
T ss_pred hhhCCcccEEEeECCccChhhhhhh---------ccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCc-CCc
Confidence 0334445555555444433212222 23667777777766 444332 25567777777777653 333
Q ss_pred -hhccccc--cccc--ccCCC----CCCccC-CccceeecCccccccccccCCcCCCCccEEEecCCCCCCCCCCC--CC
Q 042817 795 -IISQAKV--DEFG--ATAGN----HHQIPF-AKLESLKLARLPNLESVYWTPLSFSHLKEIRIFKCPRLWKLPLD--SN 862 (922)
Q Consensus 795 -i~~~~~~--~~~~--~~~~~----~~~~~f-p~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C~~L~~lp~~--~~ 862 (922)
++..... .... ....+ .....+ ++|+.|+++++ .++.++.....+++|+.|++++| +++.+|.. ..
T Consensus 389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~ 466 (520)
T 2z7x_B 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDR 466 (520)
T ss_dssp CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred ccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhcc
Confidence 4431000 0000 00000 001122 57888888775 56677766667889999999887 68888875 22
Q ss_pred cccccceEEEccc
Q 042817 863 SAKERKIVIKGEI 875 (922)
Q Consensus 863 ~~~l~~l~I~g~~ 875 (922)
.+.++.+.+.+++
T Consensus 467 l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 467 LTSLQKIWLHTNP 479 (520)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCcccEEECcCCC
Confidence 3556888887643
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=5.8e-22 Score=235.51 Aligned_cols=303 Identities=14% Similarity=0.139 Sum_probs=197.1
Q ss_pred cCCCCceEEEeccCcccc------------------cchhhhc--cCCCceEEEccCCCCCcccCccccCcccCCeeeec
Q 042817 535 ATCPHLLTLFLQNNRLSN------------------ITANFFQ--FMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLS 594 (922)
Q Consensus 535 ~~~~~L~~L~l~~~~l~~------------------~~~~~~~--~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~ 594 (922)
..+++|++|++++|.++. +|.. ++ ++++|++|+|++|.....+|..++++++|++|+++
T Consensus 203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred hcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 678899999999999888 6655 67 89999999999996677899999999999999999
Q ss_pred cCC-cc--ccchhhccC------CCCCEEeCCCCccccccCh-hhhCCCCCCCEEEeecCCcccccccCcccccCccchH
Q 042817 595 STG-IR--VLPEELKAL------KDLSYLNMERTSFVRRIPR-QLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILI 664 (922)
Q Consensus 595 ~~~-i~--~lp~~l~~l------~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 664 (922)
+|+ ++ .+|..++++ ++|++|++++|.. ..+|. +.++++++|++|++++|.... ..+
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l-~~ip~~~~l~~l~~L~~L~L~~N~l~g-------------~ip 347 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL-KTFPVETSLQKMKKLGMLECLYNQLEG-------------KLP 347 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC-SSCCCHHHHTTCTTCCEEECCSCCCEE-------------ECC
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcC-CccCchhhhccCCCCCEEeCcCCcCcc-------------chh
Confidence 998 87 489988887 9999999999974 58887 238999999999999887321 122
Q ss_pred HHhhcCCCCceEEEEEechhHHHHHhhcccccCc-ceEEEEcCccccccccccccccc--ccccceeeecccCCcceeec
Q 042817 665 EELLCLNHLSVLSVCLESDQALRKFLSSYRLKSS-TQTLRLRKLKKESESLRTLSLTD--MEKLRNLFIADSSFEKLQID 741 (922)
Q Consensus 665 ~~L~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~l~~--~~~L~~L~i~~~~~~~l~~~ 741 (922)
.+..+++|+.|+++.+.... ++......++ |+.|+++++... .+.. .+.. +++|+.|++++|.+....+.
T Consensus 348 -~~~~l~~L~~L~L~~N~l~~---lp~~l~~l~~~L~~L~Ls~N~l~--~lp~-~~~~~~l~~L~~L~Ls~N~l~~~~p~ 420 (636)
T 4eco_A 348 -AFGSEIKLASLNLAYNQITE---IPANFCGFTEQVENLSFAHNKLK--YIPN-IFDAKSVSVMSAIDFSYNEIGSVDGK 420 (636)
T ss_dssp -CCEEEEEESEEECCSSEEEE---CCTTSEEECTTCCEEECCSSCCS--SCCS-CCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred -hhCCCCCCCEEECCCCcccc---ccHhhhhhcccCcEEEccCCcCc--ccch-hhhhcccCccCEEECcCCcCCCcchh
Confidence 56778889999887665542 2333444566 999999988632 2211 1233 44899999999887664333
Q ss_pred ccccccCCCCCccCCcccEEEEecCCCCCCCch--hhccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCcc
Q 042817 742 CVGEIRKTPETSRFHNLHRVGIVNCKSLKDITW--LIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKL 819 (922)
Q Consensus 742 ~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L 819 (922)
.+... ......+++|+.|+|++| .++.+|. +..+++|+.|+|++| .+..++........ .....+++|
T Consensus 421 ~l~~~--~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~------~~~~~l~~L 490 (636)
T 4eco_A 421 NFDPL--DPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDEN------ENFKNTYLL 490 (636)
T ss_dssp SSCTT--CSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETT------EECTTGGGC
T ss_pred hhccc--ccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCC-CCCCcCHHHhcccc------ccccccCCc
Confidence 33200 001113568888888887 4556653 445788888888875 45555432110000 001122255
Q ss_pred ceeecCccccccccccCCc--CCCCccEEEecCCCCCCCCCCCCC-cccccceEE
Q 042817 820 ESLKLARLPNLESVYWTPL--SFSHLKEIRIFKCPRLWKLPLDSN-SAKERKIVI 871 (922)
Q Consensus 820 ~~L~L~~~~~L~~l~~~~~--~~p~L~~L~i~~C~~L~~lp~~~~-~~~l~~l~I 871 (922)
+.|+|+++ .+..++.... .+++|+.|++++| +++.+|.... ...++.+.+
T Consensus 491 ~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L 543 (636)
T 4eco_A 491 TSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGI 543 (636)
T ss_dssp CEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEEC
T ss_pred cEEECcCC-cCCccChhhhhccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEEC
Confidence 55555553 3344444433 4555555555553 3444443221 233444444
No 22
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=5.7e-22 Score=225.23 Aligned_cols=189 Identities=17% Similarity=0.233 Sum_probs=104.9
Q ss_pred ccccccceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCee
Q 042817 512 IEKWKGVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYL 591 (922)
Q Consensus 512 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 591 (922)
+..++++++|++++|.+..++....+++|++|++++|.++.++ ++.+++|++|++++| .++.+| ++++++|++|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEE
T ss_pred hhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCC-CCceee--cCCCCcCCEE
Confidence 4445566666666666666655556666666666666665553 556666666666666 555554 5666666666
Q ss_pred eeccCCccccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCC
Q 042817 592 NLSSTGIRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLN 671 (922)
Q Consensus 592 ~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 671 (922)
++++|.++.+| ++.+++|++|++++|. +..+| ++++++|++|++++|..... + .+..++
T Consensus 112 ~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~---l~~l~~L~~L~l~~n~~~~~--------------~-~~~~l~ 170 (457)
T 3bz5_A 112 NCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID---VSHNTQLTELDCHLNKKITK--------------L-DVTPQT 170 (457)
T ss_dssp ECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC---CTTCTTCCEEECTTCSCCCC--------------C-CCTTCT
T ss_pred ECCCCcCCeec--CCCCCcCCEEECCCCc-cceec---cccCCcCCEEECCCCCcccc--------------c-ccccCC
Confidence 66666666654 5666666666666665 34443 45666666666666542210 0 244455
Q ss_pred CCceEEEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcc
Q 042817 672 HLSVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEK 737 (922)
Q Consensus 672 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~ 737 (922)
+|+.|+++.+....++ ...+++|+.|.++++. +..+.+..+++|+.|++++|.+..
T Consensus 171 ~L~~L~ls~n~l~~l~-----l~~l~~L~~L~l~~N~-----l~~~~l~~l~~L~~L~Ls~N~l~~ 226 (457)
T 3bz5_A 171 QLTTLDCSFNKITELD-----VSQNKLLNRLNCDTNN-----ITKLDLNQNIQLTFLDCSSNKLTE 226 (457)
T ss_dssp TCCEEECCSSCCCCCC-----CTTCTTCCEEECCSSC-----CSCCCCTTCTTCSEEECCSSCCSC
T ss_pred cCCEEECCCCccceec-----cccCCCCCEEECcCCc-----CCeeccccCCCCCEEECcCCcccc
Confidence 5555555544433321 2233455555555543 112234455555555555555444
No 23
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=1.5e-21 Score=232.14 Aligned_cols=109 Identities=21% Similarity=0.303 Sum_probs=72.8
Q ss_pred CccccccceEEeeeccccccccc--ccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccC-ccccCccc
Q 042817 511 GIEKWKGVKRMSLMNNKIRNLSE--PATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFP-PGISKLIS 587 (922)
Q Consensus 511 ~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~i~~L~~ 587 (922)
.+..++++++|++++|.+..+++ ...+++|++|++++|.+..+++..|+++++|++|++++| .+..+| ..++++++
T Consensus 51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~ 129 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLIT 129 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS-CCCCSSSSCCTTCTT
T ss_pred hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCC-ccccccccccCCCCC
Confidence 35566677777777777666543 256677777777777776666666777777777777777 555544 55677777
Q ss_pred CCeeeeccCCcc--ccchhhccCCCCCEEeCCCCc
Q 042817 588 LQYLNLSSTGIR--VLPEELKALKDLSYLNMERTS 620 (922)
Q Consensus 588 L~~L~L~~~~i~--~lp~~l~~l~~L~~L~l~~~~ 620 (922)
|++|++++|.++ .+|..++++++|++|++++|.
T Consensus 130 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp CCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred CCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 777777777666 356667777777777777665
No 24
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=5e-21 Score=227.54 Aligned_cols=157 Identities=21% Similarity=0.172 Sum_probs=121.9
Q ss_pred cCCccccCCCccccccceEEeeeccccccccc--ccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcc-c
Q 042817 502 AGVGLTEAPGIEKWKGVKRMSLMNNKIRNLSE--PATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLRE-F 578 (922)
Q Consensus 502 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~-l 578 (922)
.+.++..+|.. -...+++|++++|.+..+++ ...+++|++|++++|.+..+.+..|.++++|++|+|++| .+.. .
T Consensus 20 ~~~~l~~iP~~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~ 97 (606)
T 3t6q_A 20 ENLGLNEIPGT-LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMA 97 (606)
T ss_dssp TTSCCSSCCTT-SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCSEEC
T ss_pred CCCCcccCcCC-CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC-cccccC
Confidence 34455555531 23478999999999988754 378999999999999998888888999999999999999 5554 5
Q ss_pred CccccCcccCCeeeeccCCcccc-chhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccc
Q 042817 579 PPGISKLISLQYLNLSSTGIRVL-PEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLF 657 (922)
Q Consensus 579 p~~i~~L~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 657 (922)
|..++++++|++|++++|.++.+ |..++++++|++|++++|.. ..++...+..+++|++|++++|...
T Consensus 98 ~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~---------- 166 (606)
T 3t6q_A 98 ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI-SSIKLPKGFPTEKLKVLDFQNNAIH---------- 166 (606)
T ss_dssp TTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCC-CCCCCCTTCCCTTCCEEECCSSCCC----------
T ss_pred hhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcc-cccCcccccCCcccCEEEcccCccc----------
Confidence 77899999999999999999987 56789999999999999974 5542112556999999999988632
Q ss_pred cCccchHHHhhcCCCCc
Q 042817 658 NGGEILIEELLCLNHLS 674 (922)
Q Consensus 658 ~~~~~~~~~L~~L~~L~ 674 (922)
......+..+++|+
T Consensus 167 ---~~~~~~~~~l~~L~ 180 (606)
T 3t6q_A 167 ---YLSKEDMSSLQQAT 180 (606)
T ss_dssp ---EECHHHHHTTTTCC
T ss_pred ---ccChhhhhhhcccc
Confidence 22345566666666
No 25
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=1e-21 Score=239.02 Aligned_cols=323 Identities=18% Similarity=0.200 Sum_probs=177.1
Q ss_pred ccccccceEEeeecccccc-cccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCe
Q 042817 512 IEKWKGVKRMSLMNNKIRN-LSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQY 590 (922)
Q Consensus 512 ~~~~~~l~~l~l~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 590 (922)
...++++++|++++|.+.. ++....+++|++|++++|.+....+..+..+++|++|++++|.....+|.. .+++|++
T Consensus 196 ~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~ 273 (768)
T 3rgz_A 196 VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQY 273 (768)
T ss_dssp CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCE
T ss_pred cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCE
Confidence 3556777778887777765 334466777888888877777666666777777777777777332334432 6666777
Q ss_pred eeeccCCcc-ccchhhccC-CCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhh
Q 042817 591 LNLSSTGIR-VLPEELKAL-KDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELL 668 (922)
Q Consensus 591 L~L~~~~i~-~lp~~l~~l-~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 668 (922)
|++++|.++ .+|..+..+ ++|++|++++|.....+|.. ++++++|++|++++|.... ......+.
T Consensus 274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~------------~ip~~~l~ 340 (768)
T 3rgz_A 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSG------------ELPMDTLL 340 (768)
T ss_dssp EECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEE------------ECCHHHHT
T ss_pred EECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcccC------------cCCHHHHh
Confidence 777776666 666666554 66777777776644455554 6666777777776665221 11223355
Q ss_pred cCCCCceEEEEEechh-----HHHHHh------------------hccc--ccCcceEEEEcCccccccccccccccccc
Q 042817 669 CLNHLSVLSVCLESDQ-----ALRKFL------------------SSYR--LKSSTQTLRLRKLKKESESLRTLSLTDME 723 (922)
Q Consensus 669 ~L~~L~~L~l~~~~~~-----~~~~l~------------------~~~~--~~~~L~~L~l~~~~~~~~~~~~l~l~~~~ 723 (922)
.+++|+.|+++.+... .+..+. .... ..++|+.|.++++.. .......+..++
T Consensus 341 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l--~~~~p~~l~~l~ 418 (768)
T 3rgz_A 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF--TGKIPPTLSNCS 418 (768)
T ss_dssp TCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE--EEECCGGGGGCT
T ss_pred cCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcc--ccccCHHHhcCC
Confidence 5666666655543321 011100 0000 023455555554431 011111245566
Q ss_pred ccceeeecccCCcceeecccccccCCCCCccCCcccEEEEecCCCCCCCc-hhhccCCCcEEEEeccccchhhhcccccc
Q 042817 724 KLRNLFIADSSFEKLQIDCVGEIRKTPETSRFHNLHRVGIVNCKSLKDIT-WLIFAPNLRILEISYCFEMTEIISQAKVD 802 (922)
Q Consensus 724 ~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~ 802 (922)
+|+.|++++|.+....+..+. .+++|+.|+|++|.....+| .++.+++|+.|++++|.-...++.
T Consensus 419 ~L~~L~Ls~N~l~~~~p~~l~---------~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~----- 484 (768)
T 3rgz_A 419 ELVSLHLSFNYLSGTIPSSLG---------SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS----- 484 (768)
T ss_dssp TCCEEECCSSEEESCCCGGGG---------GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG-----
T ss_pred CCCEEECcCCcccCcccHHHh---------cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCH-----
Confidence 666666666655433233332 25666666666664332333 355666666666666532222221
Q ss_pred cccccCCCCCCccCCccceeecCccccccccccCCcCCCCccEEEecCCCCCCCCCCCCC-cccccceEEEcc
Q 042817 803 EFGATAGNHHQIPFAKLESLKLARLPNLESVYWTPLSFSHLKEIRIFKCPRLWKLPLDSN-SAKERKIVIKGE 874 (922)
Q Consensus 803 ~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C~~L~~lp~~~~-~~~l~~l~I~g~ 874 (922)
....+++|+.|+|+++.....+|.....+++|+.|++++|.-...+|.... .+.++.+++.++
T Consensus 485 ---------~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 485 ---------GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp ---------GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred ---------HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 344566677777766654445555555666777777766643334554322 234455555543
No 26
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=2.4e-21 Score=233.94 Aligned_cols=304 Identities=12% Similarity=0.098 Sum_probs=204.6
Q ss_pred cCCCCceEEEeccCcccc------------------cchhh-hccCCCceEEEccCCCCCcccCccccCcccCCeeeecc
Q 042817 535 ATCPHLLTLFLQNNRLSN------------------ITANF-FQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSS 595 (922)
Q Consensus 535 ~~~~~L~~L~l~~~~l~~------------------~~~~~-~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~ 595 (922)
..+++|++|++++|.+.. +|..+ |.++++|++|+|++|.....+|..++++++|++|+|++
T Consensus 445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524 (876)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT
T ss_pred hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC
Confidence 678889999999998887 66653 33899999999999866778898899999999999999
Q ss_pred CC-ccc--cchhhccCC-------CCCEEeCCCCccccccCh-hhhCCCCCCCEEEeecCCcccccccCcccccCccchH
Q 042817 596 TG-IRV--LPEELKALK-------DLSYLNMERTSFVRRIPR-QLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILI 664 (922)
Q Consensus 596 ~~-i~~--lp~~l~~l~-------~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 664 (922)
|+ ++. +|..++++. +|++|++++|.. ..+|. +.++++++|++|++++|... ..+
T Consensus 525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L-~~ip~~~~l~~L~~L~~L~Ls~N~l~--------------~lp 589 (876)
T 4ecn_A 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL-EEFPASASLQKMVKLGLLDCVHNKVR--------------HLE 589 (876)
T ss_dssp CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC-CBCCCHHHHTTCTTCCEEECTTSCCC--------------BCC
T ss_pred CCCcccccchHHHHhhhhcccccCCccEEEeeCCcC-CccCChhhhhcCCCCCEEECCCCCcc--------------cch
Confidence 97 774 888777766 999999999874 58887 23889999999999888722 122
Q ss_pred HHhhcCCCCceEEEEEechhHHHHHhhcccccCc-ceEEEEcCccccccccccccccc--ccccceeeecccCCcceeec
Q 042817 665 EELLCLNHLSVLSVCLESDQALRKFLSSYRLKSS-TQTLRLRKLKKESESLRTLSLTD--MEKLRNLFIADSSFEKLQID 741 (922)
Q Consensus 665 ~~L~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~l~~--~~~L~~L~i~~~~~~~l~~~ 741 (922)
.+..+++|+.|+++.+.... ++.....+++ |+.|.++++... .+.. .+.. .++|+.|++++|.+....+.
T Consensus 590 -~~~~L~~L~~L~Ls~N~l~~---lp~~l~~l~~~L~~L~Ls~N~L~--~lp~-~~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 590 -AFGTNVKLTDLKLDYNQIEE---IPEDFCAFTDQVEGLGFSHNKLK--YIPN-IFNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp -CCCTTSEESEEECCSSCCSC---CCTTSCEECTTCCEEECCSSCCC--SCCS-CCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred -hhcCCCcceEEECcCCcccc---chHHHhhccccCCEEECcCCCCC--cCch-hhhccccCCCCEEECcCCcCCCcccc
Confidence 57788889999888766543 3333444556 999999888631 2211 1233 34588899988877552221
Q ss_pred ccccccCCCCCccCCcccEEEEecCCCCCCCch--hhccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCcc
Q 042817 742 CVGEIRKTPETSRFHNLHRVGIVNCKSLKDITW--LIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKL 819 (922)
Q Consensus 742 ~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L 819 (922)
.... .....+++|+.|+|++| .+..+|. +..+++|+.|+|++| .+..++........ .....+++|
T Consensus 663 l~~~----l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~------~~l~nl~~L 730 (876)
T 4ecn_A 663 ISCS----MDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKD------GNYKNTYLL 730 (876)
T ss_dssp CSSC----TTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTT------SCCTTGGGC
T ss_pred chhh----hccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCC-cCCccChHHhcccc------ccccccCCc
Confidence 1100 11112458888998887 5556654 346888999999876 46555542110000 012234578
Q ss_pred ceeecCccccccccccCCc--CCCCccEEEecCCCCCCCCCCCCC-cccccceEEEcc
Q 042817 820 ESLKLARLPNLESVYWTPL--SFSHLKEIRIFKCPRLWKLPLDSN-SAKERKIVIKGE 874 (922)
Q Consensus 820 ~~L~L~~~~~L~~l~~~~~--~~p~L~~L~i~~C~~L~~lp~~~~-~~~l~~l~I~g~ 874 (922)
+.|+|+++ .+..++.... .+++|+.|++++| +++.+|.... .+.++.+.++++
T Consensus 731 ~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N 786 (876)
T 4ecn_A 731 TTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQ 786 (876)
T ss_dssp CEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCC
T ss_pred cEEECCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCC
Confidence 88888775 5666766554 6788888888775 5666764332 344577777553
No 27
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=1.5e-21 Score=213.19 Aligned_cols=295 Identities=17% Similarity=0.165 Sum_probs=205.6
Q ss_pred ccceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCccc-CccccCcccCCeeeec
Q 042817 516 KGVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREF-PPGISKLISLQYLNLS 594 (922)
Q Consensus 516 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~L~ 594 (922)
.+++.++++++.+..+|... .++|++|++++|.+..+++..|.++++|++|++++| .+..+ |..++++++|++|+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECC
Confidence 36888999999988877543 478999999999999998878999999999999999 67665 7789999999999999
Q ss_pred cCCccccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCc
Q 042817 595 STGIRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLS 674 (922)
Q Consensus 595 ~~~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~ 674 (922)
+|.++.+|..+. ++|++|++++|. +..+|...+.++++|++|++++|.... .......+..+ +|+
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~~~l-~L~ 175 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLEN-----------SGFEPGAFDGL-KLN 175 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBG-----------GGSCTTSSCSC-CCS
T ss_pred CCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCcccc-----------CCCCcccccCC-ccC
Confidence 999999998776 899999999997 577887778999999999999987321 11223334455 778
Q ss_pred eEEEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeecccccccCCCCCcc
Q 042817 675 VLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPETSR 754 (922)
Q Consensus 675 ~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~ 754 (922)
.|+++.+....++ . ...++|+.|+++++.. .......+..+++|+.|++++|.+..+.+.++. .
T Consensus 176 ~L~l~~n~l~~l~---~--~~~~~L~~L~l~~n~i--~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~---------~ 239 (332)
T 2ft3_A 176 YLRISEAKLTGIP---K--DLPETLNELHLDHNKI--QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS---------F 239 (332)
T ss_dssp CCBCCSSBCSSCC---S--SSCSSCSCCBCCSSCC--CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG---------G
T ss_pred EEECcCCCCCccC---c--cccCCCCEEECCCCcC--CccCHHHhcCCCCCCEEECCCCcCCcCChhHhh---------C
Confidence 8877765543321 1 1225777777777652 222222366778888888888877665444443 2
Q ss_pred CCcccEEEEecCCCCCCCc-hhhccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCccceeecCccccc--c
Q 042817 755 FHNLHRVGIVNCKSLKDIT-WLIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLESLKLARLPNL--E 831 (922)
Q Consensus 755 l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L--~ 831 (922)
+++|+.|+|++| .++.+| .+..+++|+.|+++++ .++.++....... .....+++|+.|.+.+++.. .
T Consensus 240 l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~-------~~~~~~~~l~~L~l~~N~~~~~~ 310 (332)
T 2ft3_A 240 LPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPV-------GFGVKRAYYNGISLFNNPVPYWE 310 (332)
T ss_dssp CTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCS-------SCCSSSCCBSEEECCSSSSCGGG
T ss_pred CCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC-CCCccChhHcccc-------ccccccccccceEeecCcccccc
Confidence 778888888887 555665 4777888888888875 4665544211100 01123677888888876632 1
Q ss_pred ccccCCcCCCCccEEEecCCC
Q 042817 832 SVYWTPLSFSHLKEIRIFKCP 852 (922)
Q Consensus 832 ~l~~~~~~~p~L~~L~i~~C~ 852 (922)
..+.....+++|+.|.+.++.
T Consensus 311 ~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 311 VQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCGGGGTTBCCSTTEEC----
T ss_pred cCcccccccchhhhhhccccc
Confidence 222233446777777777654
No 28
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.86 E-value=7.3e-21 Score=226.13 Aligned_cols=134 Identities=16% Similarity=0.138 Sum_probs=104.1
Q ss_pred CccccccceEEeeeccccccccc--ccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCccc-CccccCccc
Q 042817 511 GIEKWKGVKRMSLMNNKIRNLSE--PATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREF-PPGISKLIS 587 (922)
Q Consensus 511 ~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~ 587 (922)
.+..++++++|++++|.+..+.+ ...+++|++|++++|.+..+++..|+++++|++|++++| .+..+ |..++++++
T Consensus 52 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~l~~~~~~~l~~ 130 (606)
T 3t6q_A 52 TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKT 130 (606)
T ss_dssp TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTS-CCSCGGGSCCTTCTT
T ss_pred HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecccc-CcccCCcchhccCCc
Confidence 46677888899998888877643 367888999999988888887777888889999999888 66665 567888888
Q ss_pred CCeeeeccCCccccc-hhhccCCCCCEEeCCCCccccccChhhhCCCCCCC--EEEeecCCc
Q 042817 588 LQYLNLSSTGIRVLP-EELKALKDLSYLNMERTSFVRRIPRQLISNFPLLR--VLRMLDCGA 646 (922)
Q Consensus 588 L~~L~L~~~~i~~lp-~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~--~L~l~~~~~ 646 (922)
|++|++++|.++.++ ..+..+++|++|++++|. +..++...++.+++|+ +|++.+|..
T Consensus 131 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp CCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred ccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhhcccceeEEecCCCcc
Confidence 999999888888762 334448888888888886 4566555578888888 777777653
No 29
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=6.2e-21 Score=208.09 Aligned_cols=294 Identities=17% Similarity=0.184 Sum_probs=211.7
Q ss_pred ccceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCccc-CccccCcccCCeeeec
Q 042817 516 KGVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREF-PPGISKLISLQYLNLS 594 (922)
Q Consensus 516 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~L~ 594 (922)
.+++.++++++.+..+|.. -.++|++|++++|.++.+++..|.++++|++|+|++| .+..+ |..++.+++|++|+++
T Consensus 31 c~l~~l~~~~~~l~~lp~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EETTEEECTTSCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCeEEEecCCCccccCcc-CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECC
Confidence 3688899998888887653 2478999999999999999888999999999999999 66665 8889999999999999
Q ss_pred cCCccccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCc
Q 042817 595 STGIRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLS 674 (922)
Q Consensus 595 ~~~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~ 674 (922)
+|.++.+|..+. ++|++|++++|. +..++...+.++++|++|++++|.... .......+..+++|+
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKS-----------SGIENGAFQGMKKLS 174 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCG-----------GGBCTTGGGGCTTCC
T ss_pred CCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCc-----------cCcChhhccCCCCcC
Confidence 999999998765 799999999997 577777778999999999999987321 122345678889999
Q ss_pred eEEEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeecccccccCCCCCcc
Q 042817 675 VLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPETSR 754 (922)
Q Consensus 675 ~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~ 754 (922)
.|+++.+....++ . ....+|+.|+++++.. .......+..+++|+.|++++|.+..+.+..+. .
T Consensus 175 ~L~l~~n~l~~l~---~--~~~~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---------~ 238 (330)
T 1xku_A 175 YIRIADTNITTIP---Q--GLPPSLTELHLDGNKI--TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA---------N 238 (330)
T ss_dssp EEECCSSCCCSCC---S--SCCTTCSEEECTTSCC--CEECTGGGTTCTTCCEEECCSSCCCEECTTTGG---------G
T ss_pred EEECCCCccccCC---c--cccccCCEEECCCCcC--CccCHHHhcCCCCCCEEECCCCcCceeChhhcc---------C
Confidence 9998766544322 1 1225788888887752 222223467788888888888887765544443 3
Q ss_pred CCcccEEEEecCCCCCCCc-hhhccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCccceeecCcccccccc
Q 042817 755 FHNLHRVGIVNCKSLKDIT-WLIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLESLKLARLPNLESV 833 (922)
Q Consensus 755 l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~l 833 (922)
+++|+.|+|++| .++.+| .+..+++|+.|++++| .++.++....... .....++.|+.|.+.+.+. ..+
T Consensus 239 l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~-------~~~~~~~~l~~l~l~~N~~-~~~ 308 (330)
T 1xku_A 239 TPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPP-------GYNTKKASYSGVSLFSNPV-QYW 308 (330)
T ss_dssp STTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCS-------SCCTTSCCCSEEECCSSSS-CGG
T ss_pred CCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccChhhcCCc-------ccccccccccceEeecCcc-ccc
Confidence 788888888888 555654 4777888888888875 4666654221110 1122357788888887653 222
Q ss_pred c---cCCcCCCCccEEEecCC
Q 042817 834 Y---WTPLSFSHLKEIRIFKC 851 (922)
Q Consensus 834 ~---~~~~~~p~L~~L~i~~C 851 (922)
. .....+++|+.++++++
T Consensus 309 ~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 309 EIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp GSCGGGGTTCCCGGGEEC---
T ss_pred ccCccccccccceeEEEeccc
Confidence 2 22334566777777654
No 30
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.86 E-value=1.6e-20 Score=230.98 Aligned_cols=329 Identities=16% Similarity=0.182 Sum_probs=204.2
Q ss_pred EEEEcCCccccCCCccccccceEEeeeccccccccc--ccCCCCceEEEeccC-cccccchhhhccCCCceEEEccCCCC
Q 042817 498 FFVHAGVGLTEAPGIEKWKGVKRMSLMNNKIRNLSE--PATCPHLLTLFLQNN-RLSNITANFFQFMPSLKVLNLSNNFS 574 (922)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L~L~~~~~ 574 (922)
.+...+.++..+|. ..+++++|++++|.+..+.+ ...+++|++|++++| ....+++..|.++++|++|+|++| .
T Consensus 8 ~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~ 84 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-K 84 (844)
T ss_dssp EEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-C
T ss_pred EEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-c
Confidence 34445566777787 56899999999999988653 478999999999999 455666777999999999999999 6
Q ss_pred Cccc-CccccCcccCCeeeeccCCccc-cchh--hccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCccccc
Q 042817 575 LREF-PPGISKLISLQYLNLSSTGIRV-LPEE--LKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERA 650 (922)
Q Consensus 575 l~~l-p~~i~~L~~L~~L~L~~~~i~~-lp~~--l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~ 650 (922)
+..+ |..++++++|++|+|++|.++. +|.. ++++++|++|++++|......|...++++++|++|++++|....
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~-- 162 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL-- 162 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC--
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe--
Confidence 6654 8899999999999999999985 5655 89999999999999985444343458999999999999987322
Q ss_pred ccCcccccCccchHHHhhcC--CCCceEEEEEechhHHHHHhhccccc------CcceEEEEcCccccccc---------
Q 042817 651 EHGSVLFNGGEILIEELLCL--NHLSVLSVCLESDQALRKFLSSYRLK------SSTQTLRLRKLKKESES--------- 713 (922)
Q Consensus 651 ~~~~~~~~~~~~~~~~L~~L--~~L~~L~l~~~~~~~~~~l~~~~~~~------~~L~~L~l~~~~~~~~~--------- 713 (922)
.....+..+ ++|+.|+++.+...... ......+ ..|+.|+++++......
T Consensus 163 -----------~~~~~l~~l~~~~L~~L~L~~n~l~~~~--~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~ 229 (844)
T 3j0a_A 163 -----------VCEHELEPLQGKTLSFFSLAANSLYSRV--SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAIS 229 (844)
T ss_dssp -----------CCSGGGHHHHHCSSCCCEECCSBSCCCC--CCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSC
T ss_pred -----------eCHHHcccccCCccceEECCCCcccccc--ccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcC
Confidence 111222222 56666666544322100 0000000 12556666554210000
Q ss_pred ---c----------------------ccccccc--ccccceeeecccCCcceeecccccccCCCCCccCCcccEEEEecC
Q 042817 714 ---L----------------------RTLSLTD--MEKLRNLFIADSSFEKLQIDCVGEIRKTPETSRFHNLHRVGIVNC 766 (922)
Q Consensus 714 ---~----------------------~~l~l~~--~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c 766 (922)
+ ....+.+ +++|+.|++++|.+..+.+..+. .+++|+.|+|++|
T Consensus 230 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~---------~l~~L~~L~L~~n 300 (844)
T 3j0a_A 230 KSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE---------TLKDLKVLNLAYN 300 (844)
T ss_dssp SCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS---------SCCCCCEEEEESC
T ss_pred cccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhh---------cCCCCCEEECCCC
Confidence 0 0000111 25677777777766554444433 2667777777766
Q ss_pred CCCCCCc--hhhccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCccceeecCccccccccccC-CcCCCCc
Q 042817 767 KSLKDIT--WLIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLESLKLARLPNLESVYWT-PLSFSHL 843 (922)
Q Consensus 767 ~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~l~~~-~~~~p~L 843 (922)
.+..++ .+..+++|+.|+|++| .+..+.. .....+++|+.|+++++ .+..++.. ...+++|
T Consensus 301 -~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-------------~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L 364 (844)
T 3j0a_A 301 -KINKIADEAFYGLDNLQVLNLSYN-LLGELYS-------------SNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKL 364 (844)
T ss_dssp -CCCEECTTTTTTCSSCCEEEEESC-CCSCCCS-------------CSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCC
T ss_pred -cCCCCChHHhcCCCCCCEEECCCC-CCCccCH-------------HHhcCCCCCCEEECCCC-CCCccChhhhcCCCCC
Confidence 333332 3556677777777665 3433322 23445566666666654 34444332 2335666
Q ss_pred cEEEecCCCCCCCCCCCCCcccccceEEEc
Q 042817 844 KEIRIFKCPRLWKLPLDSNSAKERKIVIKG 873 (922)
Q Consensus 844 ~~L~i~~C~~L~~lp~~~~~~~l~~l~I~g 873 (922)
+.|++++| .++.+|. .++++.+.+.+
T Consensus 365 ~~L~Ls~N-~l~~i~~---~~~L~~L~l~~ 390 (844)
T 3j0a_A 365 QTLDLRDN-ALTTIHF---IPSIPDIFLSG 390 (844)
T ss_dssp CEEEEETC-CSCCCSS---CCSCSEEEEES
T ss_pred CEEECCCC-CCCcccC---CCCcchhccCC
Confidence 66666654 3444443 22344444444
No 31
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=1.8e-21 Score=236.82 Aligned_cols=329 Identities=19% Similarity=0.134 Sum_probs=207.0
Q ss_pred ccccccceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCee
Q 042817 512 IEKWKGVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYL 591 (922)
Q Consensus 512 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 591 (922)
+..+++++.|++++|.+....+...+++|++|++++|.+....+. ++++++|++|++++|.....+|..++++++|++|
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 252 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEE
T ss_pred hccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEE
Confidence 455678889999998888776668899999999999988876666 8899999999999994444788889999999999
Q ss_pred eeccCCccc-cchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcC
Q 042817 592 NLSSTGIRV-LPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCL 670 (922)
Q Consensus 592 ~L~~~~i~~-lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 670 (922)
++++|.+.. +|.. .+++|++|++++|.....+|..+...+++|++|++++|... ...+..+..+
T Consensus 253 ~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~-------------~~~p~~~~~l 317 (768)
T 3rgz_A 253 NISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY-------------GAVPPFFGSC 317 (768)
T ss_dssp ECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEE-------------ECCCGGGGGC
T ss_pred ECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCC-------------CccchHHhcC
Confidence 999998874 4433 88999999999998666888873344599999999998732 2345668899
Q ss_pred CCCceEEEEEechh-HHHHHhhcccccCcceEEEEcCccccccccccccccccc-ccceeeecccCCcceeeccccc---
Q 042817 671 NHLSVLSVCLESDQ-ALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDME-KLRNLFIADSSFEKLQIDCVGE--- 745 (922)
Q Consensus 671 ~~L~~L~l~~~~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~-~L~~L~i~~~~~~~l~~~~~~~--- 745 (922)
++|+.|+++.+... .++. .....+++|+.|+++++... ......+..++ +|+.|++++|.+....+.+...
T Consensus 318 ~~L~~L~L~~n~l~~~ip~--~~l~~l~~L~~L~Ls~n~l~--~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~ 393 (768)
T 3rgz_A 318 SLLESLALSSNNFSGELPM--DTLLKMRGLKVLDLSFNEFS--GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393 (768)
T ss_dssp TTCCEEECCSSEEEEECCH--HHHTTCTTCCEEECCSSEEE--ECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTT
T ss_pred CCccEEECCCCcccCcCCH--HHHhcCCCCCEEeCcCCccC--ccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhccc
Confidence 99999999866543 2211 11234568899999887621 11111234444 6777777666554321222110
Q ss_pred --c-----------cC-CCCCccCCcccEEEEecCCCCCCCc-hhhccCCCcEEEEeccccchhhhcccccccccccCCC
Q 042817 746 --I-----------RK-TPETSRFHNLHRVGIVNCKSLKDIT-WLIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGN 810 (922)
Q Consensus 746 --~-----------~~-~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~ 810 (922)
+ +. +.....+++|+.|+|++|.-...+| .++.+++|+.|++++|.....++
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-------------- 459 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP-------------- 459 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC--------------
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCC--------------
Confidence 0 00 0011224455555555542221222 34455555555555543221221
Q ss_pred CCCccCCccceeecCccccccccccCCcCCCCccEEEecCCCCCCCCCCCCC-cccccceEEEcc
Q 042817 811 HHQIPFAKLESLKLARLPNLESVYWTPLSFSHLKEIRIFKCPRLWKLPLDSN-SAKERKIVIKGE 874 (922)
Q Consensus 811 ~~~~~fp~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C~~L~~lp~~~~-~~~l~~l~I~g~ 874 (922)
.....+++|++|+++++.....++.....+++|+.|++++|.-...+|.... .+.++.+.++++
T Consensus 460 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 524 (768)
T 3rgz_A 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred HHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCC
Confidence 1344566667777766544444555555566777777766653335554322 234566666655
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=3.5e-21 Score=227.56 Aligned_cols=285 Identities=18% Similarity=0.234 Sum_probs=230.3
Q ss_pred cCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccC-ccccCcccCCeeeeccCCccccchh-hccCCCCC
Q 042817 535 ATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFP-PGISKLISLQYLNLSSTGIRVLPEE-LKALKDLS 612 (922)
Q Consensus 535 ~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~lp~~-l~~l~~L~ 612 (922)
..+.+++.+++++|.+..+|+..|.++++|++|+|++| .+..+| ..++.+++|++|+|++|.++.+|.. ++++++|+
T Consensus 48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 45788999999999999999999999999999999999 677766 4899999999999999999988764 69999999
Q ss_pred EEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCceEEEEEechhHHHHHhhc
Q 042817 613 YLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSVLSVCLESDQALRKFLSS 692 (922)
Q Consensus 613 ~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~l~~~ 692 (922)
+|++++|. +..+|...++++++|++|++++|... ......+..+++|+.|+++.+....+ .
T Consensus 127 ~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~-------------~~~~~~~~~l~~L~~L~L~~N~l~~~-----~ 187 (597)
T 3oja_B 127 VLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLE-------------RIEDDTFQATTSLQNLQLSSNRLTHV-----D 187 (597)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC-------------BCCTTTTTTCTTCCEEECTTSCCSBC-----C
T ss_pred EEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCC-------------CCChhhhhcCCcCcEEECcCCCCCCc-----C
Confidence 99999997 67899887799999999999998732 22344578899999999976654432 1
Q ss_pred ccccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeecccccccCCCCCccCCcccEEEEecCCCCCCC
Q 042817 693 YRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPETSRFHNLHRVGIVNCKSLKDI 772 (922)
Q Consensus 693 ~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l 772 (922)
....+.|+.|.++++. +. .+..+++|+.|++++|.+..++... +++|+.|+|++| .++.+
T Consensus 188 ~~~l~~L~~L~l~~n~-----l~--~l~~~~~L~~L~ls~n~l~~~~~~~------------~~~L~~L~L~~n-~l~~~ 247 (597)
T 3oja_B 188 LSLIPSLFHANVSYNL-----LS--TLAIPIAVEELDASHNSINVVRGPV------------NVELTILKLQHN-NLTDT 247 (597)
T ss_dssp GGGCTTCSEEECCSSC-----CS--EEECCTTCSEEECCSSCCCEEECSC------------CSCCCEEECCSS-CCCCC
T ss_pred hhhhhhhhhhhcccCc-----cc--cccCCchhheeeccCCccccccccc------------CCCCCEEECCCC-CCCCC
Confidence 2345688999988775 11 2445678999999999887653322 568999999998 67778
Q ss_pred chhhccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCccceeecCccccccccccCCcCCCCccEEEecCCC
Q 042817 773 TWLIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLESLKLARLPNLESVYWTPLSFSHLKEIRIFKCP 852 (922)
Q Consensus 773 ~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C~ 852 (922)
++++.+++|+.|+|++|. +..++. ..+..+++|+.|.|+++ .+..++.....+|+|+.|++++|
T Consensus 248 ~~l~~l~~L~~L~Ls~N~-l~~~~~-------------~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N- 311 (597)
T 3oja_B 248 AWLLNYPGLVEVDLSYNE-LEKIMY-------------HPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN- 311 (597)
T ss_dssp GGGGGCTTCSEEECCSSC-CCEEES-------------GGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSS-
T ss_pred hhhccCCCCCEEECCCCc-cCCCCH-------------HHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCC-
Confidence 899999999999999864 554433 25667899999999985 67888877777999999999997
Q ss_pred CCCCCCCCCC-cccccceEEEccc
Q 042817 853 RLWKLPLDSN-SAKERKIVIKGEI 875 (922)
Q Consensus 853 ~L~~lp~~~~-~~~l~~l~I~g~~ 875 (922)
.++.+|.... .+.++.+.+.++.
T Consensus 312 ~l~~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 312 HLLHVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp CCCCCGGGHHHHTTCSEEECCSSC
T ss_pred CCCccCcccccCCCCCEEECCCCC
Confidence 5777875432 3567888888775
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=4e-21 Score=218.22 Aligned_cols=303 Identities=16% Similarity=0.167 Sum_probs=226.3
Q ss_pred ccccCCCccccccceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccC
Q 042817 505 GLTEAPGIEKWKGVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISK 584 (922)
Q Consensus 505 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~ 584 (922)
....+|.+..++++++|++++|.+..++ ...+++|++|++++|.+..++ ++.+++|++|++++| .++.+| ++.
T Consensus 53 ~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N-~l~~l~--~~~ 125 (457)
T 3bz5_A 53 SITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTN-KLTKLD--VSQ 125 (457)
T ss_dssp CCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSS-CCSCCC--CTT
T ss_pred CcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCC-cCCeec--CCC
Confidence 4455677888999999999999999885 788999999999999998874 789999999999999 788886 899
Q ss_pred cccCCeeeeccCCccccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchH
Q 042817 585 LISLQYLNLSSTGIRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILI 664 (922)
Q Consensus 585 L~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 664 (922)
+++|++|++++|.++.+| ++.+++|++|++++|..++.++ +..+++|++|++++|.... +
T Consensus 126 l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~---------------l 185 (457)
T 3bz5_A 126 NPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE---------------L 185 (457)
T ss_dssp CTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC---------------C
T ss_pred CCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce---------------e
Confidence 999999999999999985 8899999999999997777774 7889999999999987321 1
Q ss_pred HHhhcCCCCceEEEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeecccc
Q 042817 665 EELLCLNHLSVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVG 744 (922)
Q Consensus 665 ~~L~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~ 744 (922)
.+..+++|+.|+++.+....+ ....+++|+.|+++++.. ..+++..+++|+.|++++|.+..+++..+.
T Consensus 186 -~l~~l~~L~~L~l~~N~l~~~-----~l~~l~~L~~L~Ls~N~l-----~~ip~~~l~~L~~L~l~~N~l~~~~~~~l~ 254 (457)
T 3bz5_A 186 -DVSQNKLLNRLNCDTNNITKL-----DLNQNIQLTFLDCSSNKL-----TEIDVTPLTQLTYFDCSVNPLTELDVSTLS 254 (457)
T ss_dssp -CCTTCTTCCEEECCSSCCSCC-----CCTTCTTCSEEECCSSCC-----SCCCCTTCTTCSEEECCSSCCSCCCCTTCT
T ss_pred -ccccCCCCCEEECcCCcCCee-----ccccCCCCCEEECcCCcc-----cccCccccCCCCEEEeeCCcCCCcCHHHCC
Confidence 167889999999987765543 244567999999998862 224478899999999999988776443322
Q ss_pred cccCCCCCccCCcccEEEEecCCCCCCCchhhccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCccceeec
Q 042817 745 EIRKTPETSRFHNLHRVGIVNCKSLKDITWLIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLESLKL 824 (922)
Q Consensus 745 ~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L 824 (922)
.+.... ....+|+.|++++|.....+| .+.+++|+.|++++|..++.++.....-.. -.....++|+.|.+
T Consensus 255 ~L~~L~--l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~------L~l~~~~~L~~L~L 325 (457)
T 3bz5_A 255 KLTTLH--CIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQAAGITE------LDLSQNPKLVYLYL 325 (457)
T ss_dssp TCCEEE--CTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTTCCCSC------CCCTTCTTCCEEEC
T ss_pred CCCEEe--ccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccCCCcceE------echhhcccCCEEEC
Confidence 100000 011245556666665444444 567899999999999877776542110000 13445678888888
Q ss_pred CccccccccccCCcCCCCccEEEecCCCCCCCCC
Q 042817 825 ARLPNLESVYWTPLSFSHLKEIRIFKCPRLWKLP 858 (922)
Q Consensus 825 ~~~~~L~~l~~~~~~~p~L~~L~i~~C~~L~~lp 858 (922)
+++ .++.++ ...+++|+.|++++ .+++.+|
T Consensus 326 ~~N-~l~~l~--l~~l~~L~~L~l~~-N~l~~l~ 355 (457)
T 3bz5_A 326 NNT-ELTELD--VSHNTKLKSLSCVN-AHIQDFS 355 (457)
T ss_dssp TTC-CCSCCC--CTTCTTCSEEECCS-SCCCBCT
T ss_pred CCC-cccccc--cccCCcCcEEECCC-CCCCCcc
Confidence 774 556653 55688999999876 3555544
No 34
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.85 E-value=3.1e-21 Score=227.69 Aligned_cols=345 Identities=17% Similarity=0.138 Sum_probs=213.1
Q ss_pred CccccccceEEeeeccccccccc--ccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCc-cccCccc
Q 042817 511 GIEKWKGVKRMSLMNNKIRNLSE--PATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPP-GISKLIS 587 (922)
Q Consensus 511 ~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~ 587 (922)
.+..++++++|++++|.+..+++ ...+++|++|++++|.+..+++..|.++++|++|++++| .+..+|. .++++++
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~ 125 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKT 125 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCSCTTCTT
T ss_pred HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc-ccccCCCcccccccc
Confidence 46677889999999998887754 367889999999999888888878888999999999998 7777765 5888999
Q ss_pred CCeeeeccCCccc--cchhhccCCCCCEEeCCCCccccccChhhhCCCCCC----CEEEeecCCcccccccCcc------
Q 042817 588 LQYLNLSSTGIRV--LPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLL----RVLRMLDCGALERAEHGSV------ 655 (922)
Q Consensus 588 L~~L~L~~~~i~~--lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L----~~L~l~~~~~~~~~~~~~~------ 655 (922)
|++|++++|.++. +|..++++++|++|++++|. +..++...++.+++| ++|++++|...........
T Consensus 126 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~ 204 (570)
T 2z63_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 204 (570)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred ccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhcccCCCCceecCHHHhccCccee
Confidence 9999999998875 68888999999999999886 455544445555555 5666655532110000000
Q ss_pred ----------------------------------------cc----------------------cCccchHHHhhcCCCC
Q 042817 656 ----------------------------------------LF----------------------NGGEILIEELLCLNHL 673 (922)
Q Consensus 656 ----------------------------------------~~----------------------~~~~~~~~~L~~L~~L 673 (922)
.. .........+..+++|
T Consensus 205 L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L 284 (570)
T 2z63_A 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284 (570)
T ss_dssp EEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTC
T ss_pred EecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcc
Confidence 00 0001112334445556
Q ss_pred ceEEEEEechhHHHHHhh---------------------------------------cccccCcceEEEEcCcccccccc
Q 042817 674 SVLSVCLESDQALRKFLS---------------------------------------SYRLKSSTQTLRLRKLKKESESL 714 (922)
Q Consensus 674 ~~L~l~~~~~~~~~~l~~---------------------------------------~~~~~~~L~~L~l~~~~~~~~~~ 714 (922)
+.|+++.+....++.... ....+++|+.|+++++.......
T Consensus 285 ~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 364 (570)
T 2z63_A 285 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 364 (570)
T ss_dssp SEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEE
T ss_pred cEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccc
Confidence 655554432221110000 00234567777777665211110
Q ss_pred cccccccccccceeeecccCCcceeeccccc---c----------cC-C--CCCccCCcccEEEEecCCCCCCCc-hhhc
Q 042817 715 RTLSLTDMEKLRNLFIADSSFEKLQIDCVGE---I----------RK-T--PETSRFHNLHRVGIVNCKSLKDIT-WLIF 777 (922)
Q Consensus 715 ~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~---~----------~~-~--~~~~~l~~L~~L~L~~c~~l~~l~-~l~~ 777 (922)
....+..+++|+.|++++|.+..++.. +.. + .. . .....+++|+.|++++|.....++ .+..
T Consensus 365 ~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 443 (570)
T 2z63_A 365 CSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443 (570)
T ss_dssp EEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred ccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc
Confidence 012255677888888887776554332 211 0 00 0 112346677777777764322222 3566
Q ss_pred cCCCcEEEEeccccch-hhhcccccccccccCCCCCCccCCccceeecCcccccccc-ccCCcCCCCccEEEecCCCCCC
Q 042817 778 APNLRILEISYCFEMT-EIISQAKVDEFGATAGNHHQIPFAKLESLKLARLPNLESV-YWTPLSFSHLKEIRIFKCPRLW 855 (922)
Q Consensus 778 l~~L~~L~L~~c~~l~-~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~l-~~~~~~~p~L~~L~i~~C~~L~ 855 (922)
+++|+.|++++|.-.. .++ .....+++|+.|++++|. +..+ +.....+++|+.|++++| +++
T Consensus 444 l~~L~~L~l~~n~l~~~~~p--------------~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~ 507 (570)
T 2z63_A 444 LSSLEVLKMAGNSFQENFLP--------------DIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASN-QLK 507 (570)
T ss_dssp CTTCCEEECTTCEEGGGEEC--------------SCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCS
T ss_pred CCcCcEEECcCCcCccccch--------------hhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCC-cCC
Confidence 7777777777764221 122 255678899999998874 4444 555567899999999887 677
Q ss_pred CCCCCC--CcccccceEEEcc
Q 042817 856 KLPLDS--NSAKERKIVIKGE 874 (922)
Q Consensus 856 ~lp~~~--~~~~l~~l~I~g~ 874 (922)
.+|... ..+.++.+.+.++
T Consensus 508 ~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 508 SVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp CCCTTTTTTCTTCCEEECCSS
T ss_pred CCCHHHhhcccCCcEEEecCC
Confidence 776532 2356788888864
No 35
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=5.1e-20 Score=216.38 Aligned_cols=355 Identities=18% Similarity=0.179 Sum_probs=214.9
Q ss_pred EEEcCCccccCCCccccccceEEeeeccccccccc--ccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCc
Q 042817 499 FVHAGVGLTEAPGIEKWKGVKRMSLMNNKIRNLSE--PATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLR 576 (922)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~ 576 (922)
+...+.++..+|.. -.+++++|++++|.+..+++ ...+++|++|++++|.++.+++..|.++++|++|+|++| .++
T Consensus 36 l~ls~~~L~~ip~~-~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~ 113 (562)
T 3a79_B 36 VDYSNRNLTHVPKD-LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQ 113 (562)
T ss_dssp EECTTSCCCSCCTT-SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCC
T ss_pred EEcCCCCCccCCCC-CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCC
Confidence 33344455555542 23789999999999888764 478899999999999998888888899999999999999 788
Q ss_pred ccCccccCcccCCeeeeccCCccccc--hhhccCCCCCEEeCCCCccccccChhhhCCCCCC--CEEEeecCCc--cccc
Q 042817 577 EFPPGISKLISLQYLNLSSTGIRVLP--EELKALKDLSYLNMERTSFVRRIPRQLISNFPLL--RVLRMLDCGA--LERA 650 (922)
Q Consensus 577 ~lp~~i~~L~~L~~L~L~~~~i~~lp--~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L--~~L~l~~~~~--~~~~ 650 (922)
.+|.. .+++|++|++++|.++.+| ..++++++|++|++++|.. ...+ +..+++| ++|++++|.. ....
T Consensus 114 ~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l-~~~~---~~~l~~L~L~~L~L~~n~l~~~~~~ 187 (562)
T 3a79_B 114 NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF-RQLD---LLPVAHLHLSCILLDLVSYHIKGGE 187 (562)
T ss_dssp EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC-CTTT---TGGGTTSCEEEEEEEESSCCCCSSS
T ss_pred ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcc-ccCc---hhhhhhceeeEEEeecccccccccC
Confidence 88876 8999999999999988764 7899999999999999864 3322 4455555 9999988864 1100
Q ss_pred ccCccccc-----------------------------------------CccchHHHhhcCCCCceEEEEEechh--HHH
Q 042817 651 EHGSVLFN-----------------------------------------GGEILIEELLCLNHLSVLSVCLESDQ--ALR 687 (922)
Q Consensus 651 ~~~~~~~~-----------------------------------------~~~~~~~~L~~L~~L~~L~l~~~~~~--~~~ 687 (922)
........ .....+..+..+++|+.|++...... .+.
T Consensus 188 ~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~ 267 (562)
T 3a79_B 188 TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV 267 (562)
T ss_dssp CCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHH
T ss_pred cccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHH
Confidence 00000000 00112334555666666665544321 122
Q ss_pred HHhhcccccCcceEEEEcCccccc---c--------ccccc---------------------------------------
Q 042817 688 KFLSSYRLKSSTQTLRLRKLKKES---E--------SLRTL--------------------------------------- 717 (922)
Q Consensus 688 ~l~~~~~~~~~L~~L~l~~~~~~~---~--------~~~~l--------------------------------------- 717 (922)
.+.... ...+|+.|+++++.... . .+..+
T Consensus 268 ~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~ 346 (562)
T 3a79_B 268 KLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346 (562)
T ss_dssp HHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred HHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccc
Confidence 222111 12366666666554210 0 00000
Q ss_pred c-cccccccceeeecccCCcceeecccccccCCCCCccCCcccEEEEecCCCCCCCch----hhccCCCcEEEEeccccc
Q 042817 718 S-LTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPETSRFHNLHRVGIVNCKSLKDITW----LIFAPNLRILEISYCFEM 792 (922)
Q Consensus 718 ~-l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~----l~~l~~L~~L~L~~c~~l 792 (922)
. ...+++|+.|++++|.+....+.++ ..+++|+.|++++| .++.++. +..+++|+.|++++|. +
T Consensus 347 ~~~~~l~~L~~L~l~~n~l~~~~~~~~---------~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~-l 415 (562)
T 3a79_B 347 VCPPSPSSFTFLNFTQNVFTDSVFQGC---------STLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNS-L 415 (562)
T ss_dssp CCCSSCCCCCEEECCSSCCCTTTTTTC---------CSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSC-C
T ss_pred cCccCCCCceEEECCCCccccchhhhh---------cccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCc-C
Confidence 0 0345566666666665544222222 23667777777776 4554432 5567777777777653 3
Q ss_pred hh-hhcccccc--ccc--ccCCC----CCCccC-CccceeecCccccccccccCCcCCCCccEEEecCCCCCCCCCCC--
Q 042817 793 TE-IISQAKVD--EFG--ATAGN----HHQIPF-AKLESLKLARLPNLESVYWTPLSFSHLKEIRIFKCPRLWKLPLD-- 860 (922)
Q Consensus 793 ~~-i~~~~~~~--~~~--~~~~~----~~~~~f-p~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C~~L~~lp~~-- 860 (922)
.. ++...... ... ....+ .....+ ++|+.|+++++ .++.++.....+++|+.|+++++ +++.+|..
T Consensus 416 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~ 493 (562)
T 3a79_B 416 NSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDGVF 493 (562)
T ss_dssp BSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTST
T ss_pred CCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHHHH
Confidence 33 33210000 000 00000 011223 68888888886 67788877778899999999885 68888875
Q ss_pred CCcccccceEEEccc
Q 042817 861 SNSAKERKIVIKGEI 875 (922)
Q Consensus 861 ~~~~~l~~l~I~g~~ 875 (922)
...+.++.+.+.+++
T Consensus 494 ~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 494 DRLTSLQYIWLHDNP 508 (562)
T ss_dssp TTCTTCCCEECCSCC
T ss_pred hcCCCCCEEEecCCC
Confidence 233556888888654
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=4.9e-20 Score=216.51 Aligned_cols=116 Identities=27% Similarity=0.304 Sum_probs=96.6
Q ss_pred CccccccceEEeeeccccccccc--ccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCccc--CccccCcc
Q 042817 511 GIEKWKGVKRMSLMNNKIRNLSE--PATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREF--PPGISKLI 586 (922)
Q Consensus 511 ~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~l--p~~i~~L~ 586 (922)
.+..++++++|++++|.+..+++ ...+++|++|++++|.+..+|.. .+++|++|+|++| .+..+ |..+++++
T Consensus 71 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~ 146 (562)
T 3a79_B 71 DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC---PMASLRHLDLSFN-DFDVLPVCKEFGNLT 146 (562)
T ss_dssp GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC---CCTTCSEEECCSS-CCSBCCCCGGGGGCT
T ss_pred hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc---ccccCCEEECCCC-CccccCchHhhcccC
Confidence 57788999999999999998754 47899999999999999988875 7999999999999 77765 47899999
Q ss_pred cCCeeeeccCCccccchhhccCCCC--CEEeCCCCcc--ccccChhhhCCC
Q 042817 587 SLQYLNLSSTGIRVLPEELKALKDL--SYLNMERTSF--VRRIPRQLISNF 633 (922)
Q Consensus 587 ~L~~L~L~~~~i~~lp~~l~~l~~L--~~L~l~~~~~--l~~lp~~~i~~l 633 (922)
+|++|++++|.++.. .+..+++| ++|++++|.. ....|.. +..+
T Consensus 147 ~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~-l~~l 194 (562)
T 3a79_B 147 KLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETES-LQIP 194 (562)
T ss_dssp TCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCE-EEEC
T ss_pred cccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCccc-cccc
Confidence 999999999998763 46666777 9999999975 4445544 5543
No 37
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=8.9e-21 Score=216.99 Aligned_cols=307 Identities=17% Similarity=0.225 Sum_probs=218.8
Q ss_pred CCccccccceEEeeeccccc-cccc--ccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcc-cCcc--cc
Q 042817 510 PGIEKWKGVKRMSLMNNKIR-NLSE--PATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLRE-FPPG--IS 583 (922)
Q Consensus 510 ~~~~~~~~l~~l~l~~~~~~-~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~-lp~~--i~ 583 (922)
..+..++++++|++++|.+. .+++ ...+++|++|++++|.+..+++..|.++++|++|+|++| .+.. .|.. ++
T Consensus 48 ~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~ 126 (455)
T 3v47_A 48 TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC-NLDGAVLSGNFFK 126 (455)
T ss_dssp TTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTS-CCBTHHHHSSTTT
T ss_pred hHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCC-CCCccccCccccc
Confidence 34677889999999999875 3433 477899999999999998887777999999999999999 5653 4544 88
Q ss_pred CcccCCeeeeccCCcccc-chh-hccCCCCCEEeCCCCccccccChhhhCCC----------------------------
Q 042817 584 KLISLQYLNLSSTGIRVL-PEE-LKALKDLSYLNMERTSFVRRIPRQLISNF---------------------------- 633 (922)
Q Consensus 584 ~L~~L~~L~L~~~~i~~l-p~~-l~~l~~L~~L~l~~~~~l~~lp~~~i~~l---------------------------- 633 (922)
.+++|++|++++|.++.+ |.. +.++++|++|++++|......|.. +.++
T Consensus 127 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 205 (455)
T 3v47_A 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED-LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205 (455)
T ss_dssp TCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT-SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHH
T ss_pred CcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh-hhccccccccccccccCcccccchhhcccccc
Confidence 999999999999999877 544 889999999999999753333332 4333
Q ss_pred ------CCCCEEEeecCCcccccccCcccccCccchHHHh---hcCCCCceEEEEEechhHH----------HHHhhccc
Q 042817 634 ------PLLRVLRMLDCGALERAEHGSVLFNGGEILIEEL---LCLNHLSVLSVCLESDQAL----------RKFLSSYR 694 (922)
Q Consensus 634 ------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L---~~L~~L~~L~l~~~~~~~~----------~~l~~~~~ 694 (922)
++|++|++++|... ...+..+ ...++|+.|+++.+..... ........
T Consensus 206 ~~~~~~~~L~~L~Ls~n~l~-------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (455)
T 3v47_A 206 GNPFKNTSITTLDLSGNGFK-------------ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGL 272 (455)
T ss_dssp CCTTTTCEEEEEECTTSCCC-------------HHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGG
T ss_pred ccccccceeeeEecCCCccc-------------ccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccc
Confidence 55666666666522 1222333 3347788887764321110 00000001
Q ss_pred ccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeecccccccCCCCCccCCcccEEEEecCCCCCCCc-
Q 042817 695 LKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPETSRFHNLHRVGIVNCKSLKDIT- 773 (922)
Q Consensus 695 ~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~- 773 (922)
...+|+.|+++++.. .......+..+++|+.|++++|.+..+.+..+.. +++|+.|+|++| .++.++
T Consensus 273 ~~~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---------l~~L~~L~Ls~N-~l~~~~~ 340 (455)
T 3v47_A 273 EASGVKTCDLSKSKI--FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG---------LTHLLKLNLSQN-FLGSIDS 340 (455)
T ss_dssp TTSCCCEEECCSSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT---------CTTCCEEECCSS-CCCEECG
T ss_pred cccCceEEEecCccc--cccchhhcccCCCCCEEECCCCcccccChhHhcC---------cccCCEEECCCC-ccCCcCh
Confidence 135899999998862 1222233778999999999999988765555543 899999999998 555553
Q ss_pred -hhhccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCccceeecCccccccccccCC-cCCCCccEEEecCC
Q 042817 774 -WLIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLESLKLARLPNLESVYWTP-LSFSHLKEIRIFKC 851 (922)
Q Consensus 774 -~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~l~~~~-~~~p~L~~L~i~~C 851 (922)
.+..+++|+.|+|++| .+..++. .....+++|++|+|+++ .++.++... ..+++|+.|+++++
T Consensus 341 ~~~~~l~~L~~L~Ls~N-~l~~~~~-------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 341 RMFENLDKLEVLDLSYN-HIRALGD-------------QSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp GGGTTCTTCCEEECCSS-CCCEECT-------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred hHhcCcccCCEEECCCC-cccccCh-------------hhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCC
Confidence 4788999999999997 4555533 35677899999999985 677776543 56899999999997
Q ss_pred CCCCCCC
Q 042817 852 PRLWKLP 858 (922)
Q Consensus 852 ~~L~~lp 858 (922)
|---..|
T Consensus 406 ~l~~~~~ 412 (455)
T 3v47_A 406 PWDCSCP 412 (455)
T ss_dssp CBCCCTT
T ss_pred CcccCCC
Confidence 6333333
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=2.5e-20 Score=224.69 Aligned_cols=143 Identities=22% Similarity=0.270 Sum_probs=120.1
Q ss_pred EcCCccccCCCccccccceEEeeeccccccccc--ccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCccc
Q 042817 501 HAGVGLTEAPGIEKWKGVKRMSLMNNKIRNLSE--PATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREF 578 (922)
Q Consensus 501 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~l 578 (922)
..+.++..+|.. -.+++++|++++|.+..++. ...+++|++|++++|.+..+++..|.++++|++|+|++| .+..+
T Consensus 11 cs~~~L~~ip~~-~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l 88 (680)
T 1ziw_A 11 CSHLKLTQVPDD-LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQL 88 (680)
T ss_dssp CCSSCCSSCCSC-SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCC
T ss_pred CCCCCccccccc-cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCcc
Confidence 334455556642 23689999999999988775 478999999999999999998888999999999999999 88888
Q ss_pred Cc-cccCcccCCeeeeccCCccccc-hhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCc
Q 042817 579 PP-GISKLISLQYLNLSSTGIRVLP-EELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGA 646 (922)
Q Consensus 579 p~-~i~~L~~L~~L~L~~~~i~~lp-~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 646 (922)
|. .++++++|++|++++|.++.+| ..++++++|++|++++|.. ..++...+.++++|++|++++|..
T Consensus 89 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l 157 (680)
T 1ziw_A 89 SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL-SSTKLGTQVQLENLQELLLSNNKI 157 (680)
T ss_dssp CTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCC-SCCCCCSSSCCTTCCEEECCSSCC
T ss_pred ChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcc-cccCchhhcccccCCEEEccCCcc
Confidence 87 5999999999999999999887 5799999999999999975 445444488999999999998863
No 39
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.84 E-value=1.6e-20 Score=220.39 Aligned_cols=133 Identities=19% Similarity=0.258 Sum_probs=108.6
Q ss_pred CccccccceEEeeeccccccccc--ccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcc--cCccccCcc
Q 042817 511 GIEKWKGVKRMSLMNNKIRNLSE--PATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLRE--FPPGISKLI 586 (922)
Q Consensus 511 ~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~--lp~~i~~L~ 586 (922)
.+..++++++|++++|.+..+++ ...+++|++|++++|.+...++..|+++++|++|++++| .+.. .|..+++++
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLT 123 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC-CCSSSCSSCSCTTCT
T ss_pred hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC-cccccchhhhhhccC
Confidence 46678899999999999888764 478899999999999999999888999999999999999 6664 567889999
Q ss_pred cCCeeeeccCC-ccccc-hhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCC
Q 042817 587 SLQYLNLSSTG-IRVLP-EELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 587 ~L~~L~L~~~~-i~~lp-~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 645 (922)
+|++|++++|. +..+| ..+..+++|++|++++|......|.. ++++++|++|++.++.
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLSE 183 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSB
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEecccCc
Confidence 99999999987 67776 47888999999999988754445554 7777777777776654
No 40
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.83 E-value=4.3e-20 Score=215.09 Aligned_cols=105 Identities=22% Similarity=0.237 Sum_probs=90.3
Q ss_pred CccccccceEEeeeccccccccc--ccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcc--cCccccCcc
Q 042817 511 GIEKWKGVKRMSLMNNKIRNLSE--PATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLRE--FPPGISKLI 586 (922)
Q Consensus 511 ~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~--lp~~i~~L~ 586 (922)
.+..++++++|++++|.+..+.+ ...+++|++|++++|.+..+|.. .+++|++|+|++| .+.. +|..+++++
T Consensus 40 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L~~N-~l~~~~~p~~~~~l~ 115 (520)
T 2z7x_B 40 DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLDLSFN-AFDALPICKEFGNMS 115 (520)
T ss_dssp HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC---CCCCCSEEECCSS-CCSSCCCCGGGGGCT
T ss_pred hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc---ccCCccEEeccCC-ccccccchhhhccCC
Confidence 36678899999999999988743 47899999999999999988775 7999999999999 6664 678999999
Q ss_pred cCCeeeeccCCccccchhhccCCCC--CEEeCCCCcc
Q 042817 587 SLQYLNLSSTGIRVLPEELKALKDL--SYLNMERTSF 621 (922)
Q Consensus 587 ~L~~L~L~~~~i~~lp~~l~~l~~L--~~L~l~~~~~ 621 (922)
+|++|++++|.++. ..+..+++| ++|++++|..
T Consensus 116 ~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 116 QLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp TCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred cceEEEecCcccch--hhccccccceeeEEEeecccc
Confidence 99999999999876 356777777 8888888764
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=3.6e-20 Score=201.13 Aligned_cols=90 Identities=20% Similarity=0.352 Sum_probs=67.6
Q ss_pred CCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeeeccCCccccchhhccCCCCCEEeC
Q 042817 537 CPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSSTGIRVLPEELKALKDLSYLNM 616 (922)
Q Consensus 537 ~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l 616 (922)
.++++.|++++|.+..+|+. +..+++|++|+|++| .+..+|..++++++|++|++++|.++.+|..++++++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChh-hhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 45677777777777776665 555778888888877 6667777777788888888888877777777777888888888
Q ss_pred CCCccccccChh
Q 042817 617 ERTSFVRRIPRQ 628 (922)
Q Consensus 617 ~~~~~l~~lp~~ 628 (922)
++|..++.+|..
T Consensus 158 ~~n~~~~~~p~~ 169 (328)
T 4fcg_A 158 RACPELTELPEP 169 (328)
T ss_dssp EEETTCCCCCSC
T ss_pred CCCCCccccChh
Confidence 777766667654
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=1.6e-20 Score=202.75 Aligned_cols=127 Identities=18% Similarity=0.312 Sum_probs=65.4
Q ss_pred cceEEeeecccccc---ccc-ccCCCCceEEEecc-CcccccchhhhccCCCceEEEccCCCCCc-ccCccccCcccCCe
Q 042817 517 GVKRMSLMNNKIRN---LSE-PATCPHLLTLFLQN-NRLSNITANFFQFMPSLKVLNLSNNFSLR-EFPPGISKLISLQY 590 (922)
Q Consensus 517 ~l~~l~l~~~~~~~---~~~-~~~~~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~ 590 (922)
+++.|+++++.+.. ++. ...+++|++|++++ |.+....+..|.++++|++|+|++| .+. .+|..++++++|++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCGGGGGCTTCCE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCC-eeCCcCCHHHhCCCCCCE
Confidence 45555555555542 222 24455555555553 4444333333555555555555555 333 45555555555555
Q ss_pred eeeccCCcc-ccchhhccCCCCCEEeCCCCccccccChhhhCCCC-CCCEEEeecCC
Q 042817 591 LNLSSTGIR-VLPEELKALKDLSYLNMERTSFVRRIPRQLISNFP-LLRVLRMLDCG 645 (922)
Q Consensus 591 L~L~~~~i~-~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~-~L~~L~l~~~~ 645 (922)
|++++|.++ .+|..++.+++|++|++++|.....+|.. +.+++ +|++|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNR 185 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCe
Confidence 555555555 45555555555555555555533344544 44454 55555555544
No 43
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.82 E-value=1.9e-19 Score=221.39 Aligned_cols=319 Identities=14% Similarity=0.137 Sum_probs=232.3
Q ss_pred eEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCccc-CccccCcccCCeeeeccCC
Q 042817 519 KRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREF-PPGISKLISLQYLNLSSTG 597 (922)
Q Consensus 519 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~ 597 (922)
+..+.++++++.+|. ..++|++|++++|.++.+.+..|.++++|++|+|++|..+..+ |..++++++|++|+|++|.
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 456677788888887 6689999999999999988888999999999999999666676 7789999999999999999
Q ss_pred cccc-chhhccCCCCCEEeCCCCccccccCh-hhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCce
Q 042817 598 IRVL-PEELKALKDLSYLNMERTSFVRRIPR-QLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSV 675 (922)
Q Consensus 598 i~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~ 675 (922)
+..+ |..++++++|++|++++|.....+|. ..++++++|++|++++|.... ......+.++++|+.
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~------------~~~~~~~~~L~~L~~ 152 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS------------LYLHPSFGKLNSLKS 152 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCC------------CCCCGGGGTCSSCCE
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccc------------cccchhHhhCCCCCE
Confidence 9977 78899999999999999985544553 347899999999999987321 112246889999999
Q ss_pred EEEEEechhH-----HHHHhhcccccCcceEEEEcCccccccccccccccccc------ccceeeecccCCcceeecccc
Q 042817 676 LSVCLESDQA-----LRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDME------KLRNLFIADSSFEKLQIDCVG 744 (922)
Q Consensus 676 L~l~~~~~~~-----~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~------~L~~L~i~~~~~~~l~~~~~~ 744 (922)
|+++.+.... +..+. .++|+.|.++.+... ......+..++ +|+.|++++|......+..+.
T Consensus 153 L~Ls~N~i~~~~~~~l~~l~-----~~~L~~L~L~~n~l~--~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 225 (844)
T 3j0a_A 153 IDFSSNQIFLVCEHELEPLQ-----GKTLSFFSLAANSLY--SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS 225 (844)
T ss_dssp EEEESSCCCCCCSGGGHHHH-----HCSSCCCEECCSBSC--CCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGG
T ss_pred EECCCCcCCeeCHHHccccc-----CCccceEECCCCccc--cccccchhhcCCccccCceeEEecCCCcCchhHHHHHH
Confidence 9998765422 22211 157889999887631 11122233333 399999998854331111111
Q ss_pred cc-----------------------------cCCCCCccCCcccEEEEecCCCCCCC--chhhccCCCcEEEEeccccch
Q 042817 745 EI-----------------------------RKTPETSRFHNLHRVGIVNCKSLKDI--TWLIFAPNLRILEISYCFEMT 793 (922)
Q Consensus 745 ~~-----------------------------~~~~~~~~l~~L~~L~L~~c~~l~~l--~~l~~l~~L~~L~L~~c~~l~ 793 (922)
.. .........++|+.|+|++|. +..+ ..+..+++|+.|+|+++ .+.
T Consensus 226 ~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~i~ 303 (844)
T 3j0a_A 226 NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAYN-KIN 303 (844)
T ss_dssp GTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC-CCEECSCCSSSCCCCCEEEEESC-CCC
T ss_pred hhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCc-ccccChhhhhcCCCCCEEECCCC-cCC
Confidence 00 000011124789999999884 4443 24778999999999986 455
Q ss_pred hhhcccccccccccCCCCCCccCCccceeecCcccccccc-ccCCcCCCCccEEEecCCCCCCCCCCCC--CcccccceE
Q 042817 794 EIISQAKVDEFGATAGNHHQIPFAKLESLKLARLPNLESV-YWTPLSFSHLKEIRIFKCPRLWKLPLDS--NSAKERKIV 870 (922)
Q Consensus 794 ~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~l-~~~~~~~p~L~~L~i~~C~~L~~lp~~~--~~~~l~~l~ 870 (922)
.++. ..+..+++|++|+|+++. +..+ +.....+++|+.|+++++ .+..+|... ..+.++.+.
T Consensus 304 ~~~~-------------~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~ 368 (844)
T 3j0a_A 304 KIAD-------------EAFYGLDNLQVLNLSYNL-LGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLD 368 (844)
T ss_dssp EECT-------------TTTTTCSSCCEEEEESCC-CSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEE
T ss_pred CCCh-------------HHhcCCCCCCEEECCCCC-CCccCHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEE
Confidence 5533 356678999999999864 4544 445667999999999997 678777532 246689999
Q ss_pred EEccc
Q 042817 871 IKGEI 875 (922)
Q Consensus 871 I~g~~ 875 (922)
++++.
T Consensus 369 Ls~N~ 373 (844)
T 3j0a_A 369 LRDNA 373 (844)
T ss_dssp EETCC
T ss_pred CCCCC
Confidence 99874
No 44
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=2.6e-19 Score=215.82 Aligned_cols=174 Identities=20% Similarity=0.215 Sum_probs=134.2
Q ss_pred eEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCccc-CccccCcccCCeeeeccCC
Q 042817 519 KRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREF-PPGISKLISLQYLNLSSTG 597 (922)
Q Consensus 519 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~ 597 (922)
+.++.+++.+..+|... .+++++|++++|.+..+++..|.++++|++|+|++| .+..+ |..++++++|++|++++|.
T Consensus 7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp SEEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred CeeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCCc
Confidence 45777788888877543 378999999999999999988999999999999999 56554 6779999999999999999
Q ss_pred ccccch-hhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCceE
Q 042817 598 IRVLPE-ELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSVL 676 (922)
Q Consensus 598 i~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L 676 (922)
++.+|. .++++++|++|++++|. +..+|+..++++++|++|++++|.... ..+..+..+++|+.|
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~-------------~~~~~~~~l~~L~~L 150 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSS-------------TKLGTQVQLENLQEL 150 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSC-------------CCCCSSSCCTTCCEE
T ss_pred cCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccc-------------cCchhhcccccCCEE
Confidence 999997 59999999999999997 577776668999999999999987322 122335678888888
Q ss_pred EEEEechhHHHHHhhcccccCcceEEEEcCcc
Q 042817 677 SVCLESDQALRKFLSSYRLKSSTQTLRLRKLK 708 (922)
Q Consensus 677 ~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 708 (922)
+++.+...............++|+.|+++++.
T Consensus 151 ~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 151 LLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp ECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred EccCCcccccCHHHhhccccccccEEECCCCc
Confidence 88765433221110011123567777777664
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=2.1e-19 Score=193.97 Aligned_cols=131 Identities=20% Similarity=0.310 Sum_probs=109.6
Q ss_pred CCceEEEeccCcccc--cchhhhccCCCceEEEccC-CCCCcccCccccCcccCCeeeeccCCcc-ccchhhccCCCCCE
Q 042817 538 PHLLTLFLQNNRLSN--ITANFFQFMPSLKVLNLSN-NFSLREFPPGISKLISLQYLNLSSTGIR-VLPEELKALKDLSY 613 (922)
Q Consensus 538 ~~L~~L~l~~~~l~~--~~~~~~~~l~~L~~L~L~~-~~~l~~lp~~i~~L~~L~~L~L~~~~i~-~lp~~l~~l~~L~~ 613 (922)
.+++.|++++|.+.. ..+..|.++++|++|+|++ |.....+|..++++++|++|++++|.++ .+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999999986 4445699999999999995 6344579999999999999999999998 88999999999999
Q ss_pred EeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCC-CCceEEEEEec
Q 042817 614 LNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLN-HLSVLSVCLES 682 (922)
Q Consensus 614 L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~-~L~~L~l~~~~ 682 (922)
|++++|.....+|.. +.++++|++|++++|... ...+..+..++ +|+.|+++.+.
T Consensus 130 L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~-------------~~~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 130 LDFSYNALSGTLPPS-ISSLPNLVGITFDGNRIS-------------GAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp EECCSSEEESCCCGG-GGGCTTCCEEECCSSCCE-------------EECCGGGGCCCTTCCEEECCSSE
T ss_pred EeCCCCccCCcCChH-HhcCCCCCeEECcCCccc-------------CcCCHHHhhhhhcCcEEECcCCe
Confidence 999999865577876 899999999999998732 22445677777 88888876443
No 46
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=7.1e-19 Score=190.92 Aligned_cols=217 Identities=22% Similarity=0.327 Sum_probs=149.4
Q ss_pred cCCCceEEEccCCCCCcccCccccCcccCCeeeeccCCccccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEE
Q 042817 560 FMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSSTGIRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVL 639 (922)
Q Consensus 560 ~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L 639 (922)
...++++|+|++| .+..+|..++++++|++|++++|.++.+|..++++++|++|++++|. +..+|.. ++++++|++|
T Consensus 79 ~~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~-l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPAS-IASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGG-GGGCTTCCEE
T ss_pred cccceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHH-HhcCcCCCEE
Confidence 3578999999999 88999999999999999999999999999999999999999999997 4689987 8999999999
Q ss_pred EeecCCcccccccCcccccCccchHHHhhcCCCCceEEEEEechhHHHHHhhcccccCcceEEEEcCccccccccccccc
Q 042817 640 RMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSL 719 (922)
Q Consensus 640 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l 719 (922)
++++|....... ..+.. ..+. ..+
T Consensus 156 ~L~~n~~~~~~p-------------~~~~~--------------------------------~~~~-----------~~~ 179 (328)
T 4fcg_A 156 SIRACPELTELP-------------EPLAS--------------------------------TDAS-----------GEH 179 (328)
T ss_dssp EEEEETTCCCCC-------------SCSEE--------------------------------EC-C-----------CCE
T ss_pred ECCCCCCccccC-------------hhHhh--------------------------------ccch-----------hhh
Confidence 999987432110 00000 0000 013
Q ss_pred ccccccceeeecccCCcceeecccccccCCCCCccCCcccEEEEecCCCCCCCc-hhhccCCCcEEEEeccccchhhhcc
Q 042817 720 TDMEKLRNLFIADSSFEKLQIDCVGEIRKTPETSRFHNLHRVGIVNCKSLKDIT-WLIFAPNLRILEISYCFEMTEIISQ 798 (922)
Q Consensus 720 ~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~ 798 (922)
.++++|+.|++++|.+..++ ..+. .+++|+.|+|++| .+..+| .++.+++|+.|+|++|.....++.
T Consensus 180 ~~l~~L~~L~L~~n~l~~lp-~~l~---------~l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~- 247 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTGIRSLP-ASIA---------NLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPP- 247 (328)
T ss_dssp EESTTCCEEEEEEECCCCCC-GGGG---------GCTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCCC-
T ss_pred ccCCCCCEEECcCCCcCcch-Hhhc---------CCCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhHH-
Confidence 44566666666666554332 2222 2566777777666 333333 456667777777776655444332
Q ss_pred cccccccccCCCCCCccCCccceeecCccccccccccCCcCCCCccEEEecCCCCCCCCCCC
Q 042817 799 AKVDEFGATAGNHHQIPFAKLESLKLARLPNLESVYWTPLSFSHLKEIRIFKCPRLWKLPLD 860 (922)
Q Consensus 799 ~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C~~L~~lp~~ 860 (922)
....+++|++|+|++|..+..++.....+++|+.|++++|+.+..+|..
T Consensus 248 -------------~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 248 -------------IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp -------------CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred -------------HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence 3455667777777776666666666666677777777777766666654
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=5.2e-19 Score=192.93 Aligned_cols=214 Identities=20% Similarity=0.273 Sum_probs=138.6
Q ss_pred CceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccC-ccccCcccCCeeeeccCCcccc-chhhccCCCCCEEeC
Q 042817 539 HLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFP-PGISKLISLQYLNLSSTGIRVL-PEELKALKDLSYLNM 616 (922)
Q Consensus 539 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~l 616 (922)
+++.++++++.+..+|... .++|++|++++| .+..+| ..++++++|++|++++|.++.+ |..++++++|++|++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC---CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCccccCCCC---CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 6899999999999888764 368999999999 777764 5799999999999999999987 778999999999999
Q ss_pred CCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCceEEEEEechhHHHHHhhccccc
Q 042817 617 ERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSVLSVCLESDQALRKFLSSYRLK 696 (922)
Q Consensus 617 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~l~~~~~~~ 696 (922)
++|. +..+|.. +. ++|++|++++|... ......+..+++|+.|+++.+...............
T Consensus 110 ~~n~-l~~l~~~-~~--~~L~~L~l~~n~i~-------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 172 (332)
T 2ft3_A 110 SKNH-LVEIPPN-LP--SSLVELRIHDNRIR-------------KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172 (332)
T ss_dssp CSSC-CCSCCSS-CC--TTCCEEECCSSCCC-------------CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC
T ss_pred CCCc-CCccCcc-cc--ccCCEEECCCCccC-------------ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC
Confidence 9997 5788876 33 89999999998732 122334677888888888755433211111111112
Q ss_pred CcceEEEEcCcccccccccccccccccccceeeecccCCcceeecccccccCCCCCccCCcccEEEEecCCCCCCCc--h
Q 042817 697 SSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPETSRFHNLHRVGIVNCKSLKDIT--W 774 (922)
Q Consensus 697 ~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~ 774 (922)
+|+.|+++++. +..++..-.++|+.|++++|.+..+.+..+. .+++|+.|+|++| .+..++ .
T Consensus 173 -~L~~L~l~~n~-----l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~---------~l~~L~~L~L~~N-~l~~~~~~~ 236 (332)
T 2ft3_A 173 -KLNYLRISEAK-----LTGIPKDLPETLNELHLDHNKIQAIELEDLL---------RYSKLYRLGLGHN-QIRMIENGS 236 (332)
T ss_dssp -CCSCCBCCSSB-----CSSCCSSSCSSCSCCBCCSSCCCCCCTTSST---------TCTTCSCCBCCSS-CCCCCCTTG
T ss_pred -ccCEEECcCCC-----CCccCccccCCCCEEECCCCcCCccCHHHhc---------CCCCCCEEECCCC-cCCcCChhH
Confidence 44445554443 1111111124555555555555443333322 2455555555555 333332 2
Q ss_pred hhccCCCcEEEEecc
Q 042817 775 LIFAPNLRILEISYC 789 (922)
Q Consensus 775 l~~l~~L~~L~L~~c 789 (922)
+..+++|+.|++++|
T Consensus 237 ~~~l~~L~~L~L~~N 251 (332)
T 2ft3_A 237 LSFLPTLRELHLDNN 251 (332)
T ss_dssp GGGCTTCCEEECCSS
T ss_pred hhCCCCCCEEECCCC
Confidence 455555555555554
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=1.4e-18 Score=189.32 Aligned_cols=246 Identities=17% Similarity=0.225 Sum_probs=169.7
Q ss_pred CceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCc-cccCcccCCeeeeccCCcccc-chhhccCCCCCEEeC
Q 042817 539 HLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPP-GISKLISLQYLNLSSTGIRVL-PEELKALKDLSYLNM 616 (922)
Q Consensus 539 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~l 616 (922)
++++++++++.+..+|... .++|++|+|++| .++.+|. .++++++|++|++++|.++.+ |..++.+++|++|++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL---PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC---CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCccccCccC---CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 7899999999998888753 368999999999 7877775 799999999999999999987 788999999999999
Q ss_pred CCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCceEEEEEechhHHHHHhhccccc
Q 042817 617 ERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSVLSVCLESDQALRKFLSSYRLK 696 (922)
Q Consensus 617 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~l~~~~~~~ 696 (922)
++|. +..+|.. + .++|++|++++|... ......+..+++|+.|+++.+.....
T Consensus 108 s~n~-l~~l~~~-~--~~~L~~L~l~~n~l~-------------~~~~~~~~~l~~L~~L~l~~n~l~~~---------- 160 (330)
T 1xku_A 108 SKNQ-LKELPEK-M--PKTLQELRVHENEIT-------------KVRKSVFNGLNQMIVVELGTNPLKSS---------- 160 (330)
T ss_dssp CSSC-CSBCCSS-C--CTTCCEEECCSSCCC-------------BBCHHHHTTCTTCCEEECCSSCCCGG----------
T ss_pred CCCc-CCccChh-h--cccccEEECCCCccc-------------ccCHhHhcCCccccEEECCCCcCCcc----------
Confidence 9997 6788876 3 279999999998732 23455677788888877764332210
Q ss_pred CcceEEEEcCcccccccccccccccccccceeeecccCCcceeecccccccCCCCCccCCcccEEEEecCCCCCCC--ch
Q 042817 697 SSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPETSRFHNLHRVGIVNCKSLKDI--TW 774 (922)
Q Consensus 697 ~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l--~~ 774 (922)
......+..+++|+.|++++|.+..++.. .+++|+.|++++| .++.+ ..
T Consensus 161 ----------------~~~~~~~~~l~~L~~L~l~~n~l~~l~~~------------~~~~L~~L~l~~n-~l~~~~~~~ 211 (330)
T 1xku_A 161 ----------------GIENGAFQGMKKLSYIRIADTNITTIPQG------------LPPSLTELHLDGN-KITKVDAAS 211 (330)
T ss_dssp ----------------GBCTTGGGGCTTCCEEECCSSCCCSCCSS------------CCTTCSEEECTTS-CCCEECTGG
T ss_pred ----------------CcChhhccCCCCcCEEECCCCccccCCcc------------ccccCCEEECCCC-cCCccCHHH
Confidence 11112345566777777776665543211 1356777777766 34433 24
Q ss_pred hhccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCccceeecCccccccccccCCcCCCCccEEEecCCCCC
Q 042817 775 LIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLESLKLARLPNLESVYWTPLSFSHLKEIRIFKCPRL 854 (922)
Q Consensus 775 l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C~~L 854 (922)
+..+++|+.|+++++ .++.++. .....+++|++|+++++ .+..++.....+++|+.|++++| .+
T Consensus 212 ~~~l~~L~~L~Ls~n-~l~~~~~-------------~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i 275 (330)
T 1xku_A 212 LKGLNNLAKLGLSFN-SISAVDN-------------GSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NI 275 (330)
T ss_dssp GTTCTTCCEEECCSS-CCCEECT-------------TTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CC
T ss_pred hcCCCCCCEEECCCC-cCceeCh-------------hhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cC
Confidence 566777777777764 3443322 23445677777777765 45566655556677777777765 46
Q ss_pred CCCCCC
Q 042817 855 WKLPLD 860 (922)
Q Consensus 855 ~~lp~~ 860 (922)
+.+|..
T Consensus 276 ~~~~~~ 281 (330)
T 1xku_A 276 SAIGSN 281 (330)
T ss_dssp CCCCTT
T ss_pred CccChh
Confidence 666543
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=5.5e-19 Score=194.57 Aligned_cols=270 Identities=19% Similarity=0.210 Sum_probs=142.7
Q ss_pred EeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCccc-CccccCcccCCeeeeccCCcc
Q 042817 521 MSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREF-PPGISKLISLQYLNLSSTGIR 599 (922)
Q Consensus 521 l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~ 599 (922)
.+.+++.++.+|.. -.++|++|++++|.++.+++..|.++++|++|++++| .++.+ |..++++++|++|++++|.++
T Consensus 36 c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 36 CKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp EECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred eeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 44445555555432 2245666666666655555545556666666666665 44443 334556666666666666666
Q ss_pred ccchh-hccCCCCCEEeCCCCccccccCh-hhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCceEE
Q 042817 600 VLPEE-LKALKDLSYLNMERTSFVRRIPR-QLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSVLS 677 (922)
Q Consensus 600 ~lp~~-l~~l~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~ 677 (922)
.+|.. ++++++|++|++++|. +..+|. ..+.++++|++|++++|..+. ......+..+++|+.|+
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~------------~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFT------------KIQRKDFAGLTFLEELE 180 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCC------------EECTTTTTTCCEEEEEE
T ss_pred cCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCcccc------------ccCHHHccCCCCCCEEE
Confidence 55544 5556666666666654 345554 335556666666666553211 11123344555566666
Q ss_pred EEEechhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeecccccccCCCCCccCCc
Q 042817 678 VCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPETSRFHN 757 (922)
Q Consensus 678 l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l~~ 757 (922)
++.+...... .......++|+.|+++++.. ..+....+..+++|+.|++++|.+..+.+..+. .....+.
T Consensus 181 l~~n~l~~~~--~~~l~~l~~L~~L~l~~n~l--~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~------~~~~~~~ 250 (353)
T 2z80_A 181 IDASDLQSYE--PKSLKSIQNVSHLILHMKQH--ILLLEIFVDVTSSVECLELRDTDLDTFHFSELS------TGETNSL 250 (353)
T ss_dssp EEETTCCEEC--TTTTTTCSEEEEEEEECSCS--TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------------CCCC
T ss_pred CCCCCcCccC--HHHHhccccCCeecCCCCcc--ccchhhhhhhcccccEEECCCCccccccccccc------cccccch
Confidence 5544332210 11223344566666665541 111111234467777777777766654332221 1123556
Q ss_pred ccEEEEecCCCCCC-----Cc-hhhccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCccceeecCccccc
Q 042817 758 LHRVGIVNCKSLKD-----IT-WLIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLESLKLARLPNL 830 (922)
Q Consensus 758 L~~L~L~~c~~l~~-----l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L 830 (922)
++.++++++ .+.. +| ++..+++|+.|+|++| .++.++. .....+++|++|+|++++-.
T Consensus 251 l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~-------------~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 251 IKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPD-------------GIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp CCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCT-------------TTTTTCTTCCEEECCSSCBC
T ss_pred hhccccccc-cccCcchhhhHHHHhcccCCCEEECCCC-CCCccCH-------------HHHhcCCCCCEEEeeCCCcc
Confidence 777777766 3332 22 3567788888888875 4555543 23456788888888876543
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=1.4e-18 Score=191.21 Aligned_cols=199 Identities=17% Similarity=0.196 Sum_probs=138.6
Q ss_pred cCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCc-cccCcccCCeeeeccCCccccc-hhhccCCCCC
Q 042817 535 ATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPP-GISKLISLQYLNLSSTGIRVLP-EELKALKDLS 612 (922)
Q Consensus 535 ~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~lp-~~l~~l~~L~ 612 (922)
..|+.....+.+++.++.+|.... ++|++|++++| .++.+|. .++++++|++|++++|.++.++ ..++++++|+
T Consensus 28 ~~C~~~~~c~~~~~~l~~iP~~~~---~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLNSIPSGLT---EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp CEECTTSEEECCSTTCSSCCTTCC---TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCCeEeeCCCCCccccccccc---ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 456666678889999999988643 58999999999 7888876 7999999999999999999875 5699999999
Q ss_pred EEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchH-HHhhcCCCCceEEEEEec-hhHHHHHh
Q 042817 613 YLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILI-EELLCLNHLSVLSVCLES-DQALRKFL 690 (922)
Q Consensus 613 ~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~~L~~L~l~~~~-~~~~~~l~ 690 (922)
+|++++|. +..+|...++++++|++|++++|.... ... ..+..+++|+.|+++.+. ...
T Consensus 104 ~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~-------------l~~~~~~~~l~~L~~L~l~~n~~~~~----- 164 (353)
T 2z80_A 104 HLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNPYKT-------------LGETSLFSHLTKLQILRVGNMDTFTK----- 164 (353)
T ss_dssp EEECCSSC-CSSCCHHHHTTCTTCSEEECTTCCCSS-------------SCSSCSCTTCTTCCEEEEEESSSCCE-----
T ss_pred EEECCCCc-CCcCCHhHhCCCccCCEEECCCCCCcc-------------cCchhhhccCCCCcEEECCCCccccc-----
Confidence 99999997 678888778999999999999987321 111 246778999999988652 111
Q ss_pred hcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeecccccccCCCCCccCCcccEEEEecCCCCC
Q 042817 691 SSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPETSRFHNLHRVGIVNCKSLK 770 (922)
Q Consensus 691 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~ 770 (922)
+....+..+++|+.|++++|.+....+..+. .+++|+.|+++++ .+.
T Consensus 165 -----------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~---------~l~~L~~L~l~~n-~l~ 211 (353)
T 2z80_A 165 -----------------------IQRKDFAGLTFLEELEIDASDLQSYEPKSLK---------SIQNVSHLILHMK-QHI 211 (353)
T ss_dssp -----------------------ECTTTTTTCCEEEEEEEEETTCCEECTTTTT---------TCSEEEEEEEECS-CST
T ss_pred -----------------------cCHHHccCCCCCCEEECCCCCcCccCHHHHh---------ccccCCeecCCCC-ccc
Confidence 0011234455556666665555443333332 2555666666655 233
Q ss_pred CCch--hhccCCCcEEEEecc
Q 042817 771 DITW--LIFAPNLRILEISYC 789 (922)
Q Consensus 771 ~l~~--l~~l~~L~~L~L~~c 789 (922)
.++. +..+++|+.|+++++
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESC
T ss_pred cchhhhhhhcccccEEECCCC
Confidence 3332 234566666666554
No 51
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=1.5e-18 Score=207.55 Aligned_cols=142 Identities=24% Similarity=0.278 Sum_probs=119.1
Q ss_pred cCCccccCCCccccccceEEeeeccccccccc--ccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccC
Q 042817 502 AGVGLTEAPGIEKWKGVKRMSLMNNKIRNLSE--PATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFP 579 (922)
Q Consensus 502 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp 579 (922)
.+.++..+|.- -..++++|++++|.++.+++ ...+++|++|++++|.++.++++.|.++++|++|+|++| .++.+|
T Consensus 39 ~~~~l~~vP~~-lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~ 116 (635)
T 4g8a_A 39 MELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLA 116 (635)
T ss_dssp TTSCCSSCCSS-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEEC
T ss_pred CCCCcCccCCC-CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCC
Confidence 34456666641 23579999999999999875 478999999999999999999988999999999999999 888888
Q ss_pred c-cccCcccCCeeeeccCCccccch-hhccCCCCCEEeCCCCcccc-ccChhhhCCCCCCCEEEeecCCc
Q 042817 580 P-GISKLISLQYLNLSSTGIRVLPE-ELKALKDLSYLNMERTSFVR-RIPRQLISNFPLLRVLRMLDCGA 646 (922)
Q Consensus 580 ~-~i~~L~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~l~~~~~l~-~lp~~~i~~l~~L~~L~l~~~~~ 646 (922)
. .+++|++|++|++++|+++.+|. .++++++|++|++++|.... .+|.. ++++++|++|++++|..
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp GGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred HHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCccc
Confidence 5 47999999999999999999886 48999999999999997422 24554 78999999999998754
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=8.6e-19 Score=188.93 Aligned_cols=218 Identities=17% Similarity=0.221 Sum_probs=140.3
Q ss_pred eEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCccc---CccccCcccCCeeeecc
Q 042817 519 KRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREF---PPGISKLISLQYLNLSS 595 (922)
Q Consensus 519 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~l---p~~i~~L~~L~~L~L~~ 595 (922)
+.++..++.+..+|.. ..++|++|++++|.+..++...|.++++|++|+|++| .+..+ |..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCC-CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCC
Confidence 3566666677776653 2367888888888888888877888888888888888 66544 56677788888888888
Q ss_pred CCccccchhhccCCCCCEEeCCCCccccccCh-hhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCc
Q 042817 596 TGIRVLPEELKALKDLSYLNMERTSFVRRIPR-QLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLS 674 (922)
Q Consensus 596 ~~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~ 674 (922)
|.++.+|..+..+++|++|++++|. +..++. ..+.++++|++|++++|.... .....+..+++|+
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~l~~L~ 153 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRV-------------AFNGIFNGLSSLE 153 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEE-------------CSTTTTTTCTTCC
T ss_pred CccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCc-------------cchhhcccCcCCC
Confidence 8888888888888888888888886 455553 447888888888888876221 1122233444444
Q ss_pred eEEEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeecccccccCCCCCcc
Q 042817 675 VLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPETSR 754 (922)
Q Consensus 675 ~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~ 754 (922)
.|+++ ++.... ......+..+++|+.|++++|.+..+.+..+..
T Consensus 154 ~L~l~--------------------------~n~l~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--------- 197 (306)
T 2z66_A 154 VLKMA--------------------------GNSFQE-NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS--------- 197 (306)
T ss_dssp EEECT--------------------------TCEEGG-GEECSCCTTCTTCCEEECTTSCCCEECTTTTTT---------
T ss_pred EEECC--------------------------CCcccc-ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcC---------
Confidence 44442 221000 000112455666777777776665544444332
Q ss_pred CCcccEEEEecCCCCCCCc--hhhccCCCcEEEEecc
Q 042817 755 FHNLHRVGIVNCKSLKDIT--WLIFAPNLRILEISYC 789 (922)
Q Consensus 755 l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c 789 (922)
+++|+.|+|++| .++.++ .+..+++|+.|+|++|
T Consensus 198 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 198 LSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp CTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTS
T ss_pred CCCCCEEECCCC-ccCccChhhccCcccCCEeECCCC
Confidence 566666666666 333332 2455666666666664
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=3.4e-18 Score=194.19 Aligned_cols=221 Identities=18% Similarity=0.259 Sum_probs=118.6
Q ss_pred ccceEEeeeccccccccc--ccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCc-cccCcccCCeee
Q 042817 516 KGVKRMSLMNNKIRNLSE--PATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPP-GISKLISLQYLN 592 (922)
Q Consensus 516 ~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 592 (922)
++++.|++++|.+..++. ...+++|++|++++|.+..+++..|.++++|++|+|++| .++.+|. .+..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceee
Confidence 345555555555554432 244555555555555555555555555555555555555 4444443 355555555555
Q ss_pred eccCCccccch-hhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCC
Q 042817 593 LSSTGIRVLPE-ELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLN 671 (922)
Q Consensus 593 L~~~~i~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 671 (922)
+++|.++.+|. .+.++++|++|++++|..+..+|...+.++++|++|++++|..
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l------------------------- 197 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL------------------------- 197 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC-------------------------
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC-------------------------
Confidence 55555555443 3455555555555554445555544455555555555555541
Q ss_pred CCceEEEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeecccccccCCCC
Q 042817 672 HLSVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPE 751 (922)
Q Consensus 672 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~ 751 (922)
..++ ......+|+.|+++++. ...+....+..+++|+.|++++|.+..+.+..+..
T Consensus 198 ------------~~~~----~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------ 253 (440)
T 3zyj_A 198 ------------REIP----NLTPLIKLDELDLSGNH--LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN------ 253 (440)
T ss_dssp ------------SSCC----CCTTCSSCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT------
T ss_pred ------------cccc----ccCCCcccCEEECCCCc--cCccChhhhccCccCCEEECCCCceeEEChhhhcC------
Confidence 1110 01123345555555543 11222223666777778888777776655544432
Q ss_pred CccCCcccEEEEecCCCCCCCch--hhccCCCcEEEEeccc
Q 042817 752 TSRFHNLHRVGIVNCKSLKDITW--LIFAPNLRILEISYCF 790 (922)
Q Consensus 752 ~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~ 790 (922)
+++|+.|+|++| .++.++. +..+++|+.|+|++++
T Consensus 254 ---l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 254 ---LQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ---CTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred ---CCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 677777877776 5555543 5667777777777643
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=6.1e-18 Score=192.08 Aligned_cols=242 Identities=19% Similarity=0.282 Sum_probs=189.7
Q ss_pred ceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccC-ccccCcccCCeeeeccC
Q 042817 518 VKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFP-PGISKLISLQYLNLSST 596 (922)
Q Consensus 518 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~L~~~ 596 (922)
.+.++..+..+..+|... .++++.|++++|.+..+++..|.++++|++|+|++| .+..++ ..+.++++|++|+|++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCC
Confidence 456777777787777542 378999999999999999888999999999999999 777765 67899999999999999
Q ss_pred Cccccch-hhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCce
Q 042817 597 GIRVLPE-ELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSV 675 (922)
Q Consensus 597 ~i~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~ 675 (922)
.++.+|. .+..+++|++|++++|. +..+|...+.++++|++|++.+|..+.. .....+..++
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~------------i~~~~~~~l~---- 185 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSY------------ISEGAFEGLS---- 185 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCE------------ECTTTTTTCS----
T ss_pred cCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcce------------eCcchhhccc----
Confidence 9999986 58999999999999997 6788877799999999999998764321 1112233444
Q ss_pred EEEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeecccccccCCCCCccC
Q 042817 676 LSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPETSRF 755 (922)
Q Consensus 676 L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l 755 (922)
+|+.|+++++.. ..+ ..+..+++|+.|++++|.+..+.+..+.. +
T Consensus 186 ----------------------~L~~L~L~~n~l--~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---------l 230 (440)
T 3zyj_A 186 ----------------------NLRYLNLAMCNL--REI--PNLTPLIKLDELDLSGNHLSAIRPGSFQG---------L 230 (440)
T ss_dssp ----------------------SCCEEECTTSCC--SSC--CCCTTCSSCCEEECTTSCCCEECTTTTTT---------C
T ss_pred ----------------------ccCeecCCCCcC--ccc--cccCCCcccCEEECCCCccCccChhhhcc---------C
Confidence 455555555531 111 13678899999999999888776655543 8
Q ss_pred CcccEEEEecCCCCCCCc--hhhccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCccceeecCccc
Q 042817 756 HNLHRVGIVNCKSLKDIT--WLIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLESLKLARLP 828 (922)
Q Consensus 756 ~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~ 828 (922)
++|+.|+|+++ .++.++ .+..+++|+.|+|+++ .++.++. ..+..+++|+.|+|++++
T Consensus 231 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-------------~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 231 MHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHN-NLTLLPH-------------DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTS-CCCCCCT-------------TTTSSCTTCCEEECCSSC
T ss_pred ccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCC-CCCccCh-------------hHhccccCCCEEEcCCCC
Confidence 99999999998 555543 4778999999999986 5766654 356778999999998755
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=5.3e-18 Score=198.22 Aligned_cols=254 Identities=20% Similarity=0.200 Sum_probs=132.3
Q ss_pred ceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeeeccCC
Q 042817 518 VKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSSTG 597 (922)
Q Consensus 518 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~ 597 (922)
++.++++++.+..+|.... ++|++|++++|.++.+|. .+++|++|+|++| .++.+|. .+++|++|++++|.
T Consensus 42 l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSNP 112 (622)
T ss_dssp CCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSCC
T ss_pred CcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCCc
Confidence 4555555555555544322 556666666665555544 2455666666665 4555554 45556666666666
Q ss_pred ccccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCceEE
Q 042817 598 IRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSVLS 677 (922)
Q Consensus 598 i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~ 677 (922)
++.+|. .+++|++|++++|. +..+|.. +++|++|++++|.... . . ..+++|+.|+
T Consensus 113 l~~l~~---~l~~L~~L~L~~N~-l~~lp~~----l~~L~~L~Ls~N~l~~-----------l---~---~~~~~L~~L~ 167 (622)
T 3g06_A 113 LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL----PPGLQELSVSDNQLAS-----------L---P---ALPSELCKLW 167 (622)
T ss_dssp CCCCCC---CCTTCCEEECCSSC-CSCCCCC----CTTCCEEECCSSCCSC-----------C---C---CCCTTCCEEE
T ss_pred CCCCCC---CCCCcCEEECCCCC-CCcCCCC----CCCCCEEECcCCcCCC-----------c---C---CccCCCCEEE
Confidence 555554 34555666666554 3445542 3555666665554211 0 0 0123455555
Q ss_pred EEEechhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeecccccccCCCCCccCCc
Q 042817 678 VCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPETSRFHN 757 (922)
Q Consensus 678 l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l~~ 757 (922)
++.+....++ ..+++|+.|+++++.. ..++ ..+++|+.|.+++|.+..++. .+++
T Consensus 168 L~~N~l~~l~------~~~~~L~~L~Ls~N~l-----~~l~-~~~~~L~~L~L~~N~l~~l~~-------------~~~~ 222 (622)
T 3g06_A 168 AYNNQLTSLP------MLPSGLQELSVSDNQL-----ASLP-TLPSELYKLWAYNNRLTSLPA-------------LPSG 222 (622)
T ss_dssp CCSSCCSCCC------CCCTTCCEEECCSSCC-----SCCC-CCCTTCCEEECCSSCCSSCCC-------------CCTT
T ss_pred CCCCCCCCCc------ccCCCCcEEECCCCCC-----CCCC-CccchhhEEECcCCcccccCC-------------CCCC
Confidence 4443332221 2234566666655531 1111 123566666666665544321 1456
Q ss_pred ccEEEEecCCCCCCCchhhccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCccceeecCccccccccccCC
Q 042817 758 LHRVGIVNCKSLKDITWLIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLESLKLARLPNLESVYWTP 837 (922)
Q Consensus 758 L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~l~~~~ 837 (922)
|+.|+|++| .++.+| ..+++|+.|+|++| .++.++ . .+++|+.|+|+++ .+..+|...
T Consensus 223 L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N-~L~~lp---------------~--~~~~L~~L~Ls~N-~L~~lp~~l 280 (622)
T 3g06_A 223 LKELIVSGN-RLTSLP--VLPSELKELMVSGN-RLTSLP---------------M--LPSGLLSLSVYRN-QLTRLPESL 280 (622)
T ss_dssp CCEEECCSS-CCSCCC--CCCTTCCEEECCSS-CCSCCC---------------C--CCTTCCEEECCSS-CCCSCCGGG
T ss_pred CCEEEccCC-ccCcCC--CCCCcCcEEECCCC-CCCcCC---------------c--ccccCcEEeCCCC-CCCcCCHHH
Confidence 666666665 455555 44566667766664 344331 1 3466666766664 455665555
Q ss_pred cCCCCccEEEecCCC
Q 042817 838 LSFSHLKEIRIFKCP 852 (922)
Q Consensus 838 ~~~p~L~~L~i~~C~ 852 (922)
..+++|+.|++++++
T Consensus 281 ~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 281 IHLSSETTVNLEGNP 295 (622)
T ss_dssp GGSCTTCEEECCSCC
T ss_pred hhccccCEEEecCCC
Confidence 556667777666654
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=4.7e-18 Score=193.76 Aligned_cols=221 Identities=19% Similarity=0.258 Sum_probs=123.3
Q ss_pred ccceEEeeeccccccccc--ccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCcc-ccCcccCCeee
Q 042817 516 KGVKRMSLMNNKIRNLSE--PATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPG-ISKLISLQYLN 592 (922)
Q Consensus 516 ~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 592 (922)
++++.|++++|.+..+++ ...+++|++|++++|.+..+++..|.++++|++|+|++| .++.+|.. ++.+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEE
Confidence 355555555555555432 245555566666555555555555555555666666555 44444433 55555566666
Q ss_pred eccCCccccch-hhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCC
Q 042817 593 LSSTGIRVLPE-ELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLN 671 (922)
Q Consensus 593 L~~~~i~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 671 (922)
|++|.++.+|. .+.++++|++|++++|..+..+|...+.++++|++|++++|.... +..+..
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~---------------~~~~~~-- 216 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD---------------MPNLTP-- 216 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS---------------CCCCTT--
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc---------------cccccc--
Confidence 65555555543 355555566666655555555555445555555655555554210 001222
Q ss_pred CCceEEEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeecccccccCCCC
Q 042817 672 HLSVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPE 751 (922)
Q Consensus 672 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~ 751 (922)
+.+|+.|+++++. ...+....+..+++|+.|++++|.+..+.+..+..
T Consensus 217 ------------------------l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------ 264 (452)
T 3zyi_A 217 ------------------------LVGLEELEMSGNH--FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG------ 264 (452)
T ss_dssp ------------------------CTTCCEEECTTSC--CSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTT------
T ss_pred ------------------------cccccEEECcCCc--CcccCcccccCccCCCEEEeCCCcCceECHHHhcC------
Confidence 2345555555543 11222223666778888888887776655544432
Q ss_pred CccCCcccEEEEecCCCCCCCch--hhccCCCcEEEEeccc
Q 042817 752 TSRFHNLHRVGIVNCKSLKDITW--LIFAPNLRILEISYCF 790 (922)
Q Consensus 752 ~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~ 790 (922)
+++|+.|+|++| .++.++. +..+++|+.|+|++++
T Consensus 265 ---l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 265 ---LASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ---CTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred ---CCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 677888888877 5555543 5667788888887643
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=4.5e-19 Score=191.91 Aligned_cols=262 Identities=15% Similarity=0.100 Sum_probs=163.2
Q ss_pred ceEEeeecccccccccc--cCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeeecc
Q 042817 518 VKRMSLMNNKIRNLSEP--ATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSS 595 (922)
Q Consensus 518 l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~ 595 (922)
+...+++.+.+...+.. ..+++|+.|++++|.+..+++..|..+++|++|+|++| .+...++ ++.+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcC
Confidence 33444444544432221 45678999999999988888878899999999999998 6776665 88899999999999
Q ss_pred CCccccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCce
Q 042817 596 TGIRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSV 675 (922)
Q Consensus 596 ~~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~ 675 (922)
|.++.+|. .++|++|++++|. +..++. ..+++|++|++++|.... .....+..+++|+.
T Consensus 90 n~l~~l~~----~~~L~~L~l~~n~-l~~~~~---~~~~~L~~L~l~~N~l~~-------------~~~~~~~~l~~L~~ 148 (317)
T 3o53_A 90 NYVQELLV----GPSIETLHAANNN-ISRVSC---SRGQGKKNIYLANNKITM-------------LRDLDEGCRSRVQY 148 (317)
T ss_dssp SEEEEEEE----CTTCCEEECCSSC-CSEEEE---CCCSSCEEEECCSSCCCS-------------GGGBCTGGGSSEEE
T ss_pred CccccccC----CCCcCEEECCCCc-cCCcCc---cccCCCCEEECCCCCCCC-------------ccchhhhccCCCCE
Confidence 98887773 4889999999987 455654 347889999998887321 11112334444444
Q ss_pred EEEEEechhHHHHHhhcccccCcceEEEEcCccccccccccccc-ccccccceeeecccCCcceeecccccccCCCCCcc
Q 042817 676 LSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSL-TDMEKLRNLFIADSSFEKLQIDCVGEIRKTPETSR 754 (922)
Q Consensus 676 L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l-~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~ 754 (922)
|++ +++.. .......+ ..+++|+.|++++|.+..++... .
T Consensus 149 L~L--------------------------s~N~l--~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----------~ 189 (317)
T 3o53_A 149 LDL--------------------------KLNEI--DTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-----------V 189 (317)
T ss_dssp EEC--------------------------TTSCC--CEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-----------C
T ss_pred EEC--------------------------CCCCC--CcccHHHHhhccCcCCEEECCCCcCccccccc-----------c
Confidence 444 43321 01111112 34566777777777665542111 2
Q ss_pred CCcccEEEEecCCCCCCC-chhhccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCccceeecCccccc-cc
Q 042817 755 FHNLHRVGIVNCKSLKDI-TWLIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLESLKLARLPNL-ES 832 (922)
Q Consensus 755 l~~L~~L~L~~c~~l~~l-~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L-~~ 832 (922)
+++|+.|+|++| .++.+ +.+..+++|+.|++++| .++.++. ....+++|+.|++++++-. ..
T Consensus 190 l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~--------------~~~~l~~L~~L~l~~N~~~~~~ 253 (317)
T 3o53_A 190 FAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEK--------------ALRFSQNLEHFDLRGNGFHCGT 253 (317)
T ss_dssp CTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECT--------------TCCCCTTCCEEECTTCCCBHHH
T ss_pred cccCCEEECCCC-cCCcchhhhcccCcccEEECcCC-cccchhh--------------HhhcCCCCCEEEccCCCccCcC
Confidence 567777777766 44444 34566777777777765 4554432 3445667777777765433 23
Q ss_pred cccCCcCCCCccEEEecCCCCCCCC
Q 042817 833 VYWTPLSFSHLKEIRIFKCPRLWKL 857 (922)
Q Consensus 833 l~~~~~~~p~L~~L~i~~C~~L~~l 857 (922)
++.....+++|+.|.+.+|+.++..
T Consensus 254 ~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 254 LRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhccccceEEECCCchhccCC
Confidence 3333345666777777666666553
No 58
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.74 E-value=2e-17 Score=197.76 Aligned_cols=337 Identities=15% Similarity=0.097 Sum_probs=218.3
Q ss_pred CccccccceEEeeecccccccccc--cCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCc-cccCccc
Q 042817 511 GIEKWKGVKRMSLMNNKIRNLSEP--ATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPP-GISKLIS 587 (922)
Q Consensus 511 ~~~~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~ 587 (922)
.+..++++++|++++|.+..+++. ..+++|++|+|++|.++.+++..|.++++|++|+|++| .++.+|+ .++++++
T Consensus 71 ~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~ 149 (635)
T 4g8a_A 71 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKT 149 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS-CCCCSTTCCCTTCTT
T ss_pred HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC-cCCCCChhhhhcCcc
Confidence 467889999999999999988763 68999999999999999999998999999999999999 7888875 5899999
Q ss_pred CCeeeeccCCccc--cchhhccCCCCCEEeCCCCccccccChhhhCCCCCC---------------------------CE
Q 042817 588 LQYLNLSSTGIRV--LPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLL---------------------------RV 638 (922)
Q Consensus 588 L~~L~L~~~~i~~--lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L---------------------------~~ 638 (922)
|++|++++|.++. +|..++.+++|++|++++|.. ..++...+..++++ +.
T Consensus 150 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~ 228 (635)
T 4g8a_A 150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 228 (635)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC-CEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred cCeeccccCccccCCCchhhccchhhhhhcccCccc-cccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhh
Confidence 9999999999874 578899999999999999863 44433222222111 12
Q ss_pred EEeecCCccc---------------------------cc-------------------------------ccCc------
Q 042817 639 LRMLDCGALE---------------------------RA-------------------------------EHGS------ 654 (922)
Q Consensus 639 L~l~~~~~~~---------------------------~~-------------------------------~~~~------ 654 (922)
|++.++.... .. ....
T Consensus 229 l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 308 (635)
T 4g8a_A 229 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNV 308 (635)
T ss_dssp EEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTC
T ss_pred hhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccc
Confidence 2222110000 00 0000
Q ss_pred -------c------ccc---------------------------------CccchHHHhhcCCCCceEEEEEechhHHHH
Q 042817 655 -------V------LFN---------------------------------GGEILIEELLCLNHLSVLSVCLESDQALRK 688 (922)
Q Consensus 655 -------~------~~~---------------------------------~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~ 688 (922)
. ... ...........+++|+.|+++.+.......
T Consensus 309 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 388 (635)
T 4g8a_A 309 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 388 (635)
T ss_dssp SEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEE
T ss_pred ccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccc
Confidence 0 000 000000111246788888876543211000
Q ss_pred HhhcccccCcceEEEEcCcccc---------------------c-ccccccccccccccceeeecccCCcceeecccccc
Q 042817 689 FLSSYRLKSSTQTLRLRKLKKE---------------------S-ESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEI 746 (922)
Q Consensus 689 l~~~~~~~~~L~~L~l~~~~~~---------------------~-~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~ 746 (922)
.........+++.+.+..+... . .......+..+++++.++++.|......+..+.
T Consensus 389 ~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~-- 466 (635)
T 4g8a_A 389 CSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-- 466 (635)
T ss_dssp CCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTT--
T ss_pred cccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccc--
Confidence 0000011223444443332210 0 000111245677888888888876654443333
Q ss_pred cCCCCCccCCcccEEEEecCCCCCCC--chhhccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCccceeec
Q 042817 747 RKTPETSRFHNLHRVGIVNCKSLKDI--TWLIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLESLKL 824 (922)
Q Consensus 747 ~~~~~~~~l~~L~~L~L~~c~~l~~l--~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L 824 (922)
.+++|+.|+|++|.....+ ..+..+++|+.|+|++| .++.++. ..+..+++|++|+|
T Consensus 467 -------~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~-------------~~f~~l~~L~~L~L 525 (635)
T 4g8a_A 467 -------GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSP-------------TAFNSLSSLQVLNM 525 (635)
T ss_dssp -------TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECT-------------TTTTTCTTCCEEEC
T ss_pred -------cchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcCh-------------HHHcCCCCCCEEEC
Confidence 3789999999988655443 24778999999999997 5766654 35678899999999
Q ss_pred CccccccccccC-CcCCCCccEEEecCCCCCCCCCCCCC---cccccceEEEcc
Q 042817 825 ARLPNLESVYWT-PLSFSHLKEIRIFKCPRLWKLPLDSN---SAKERKIVIKGE 874 (922)
Q Consensus 825 ~~~~~L~~l~~~-~~~~p~L~~L~i~~C~~L~~lp~~~~---~~~l~~l~I~g~ 874 (922)
+++ ++..++.. ...+++|+.|+++++ +++.+|.... ..+++.+.+.++
T Consensus 526 s~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 526 SHN-NFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp TTS-CCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred CCC-cCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCC
Confidence 985 67776543 456899999999985 6777654322 246788888753
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=8.6e-18 Score=191.59 Aligned_cols=204 Identities=22% Similarity=0.292 Sum_probs=162.6
Q ss_pred CCccccccceEEeeeccccccccc--ccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCc-cccCcc
Q 042817 510 PGIEKWKGVKRMSLMNNKIRNLSE--PATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPP-GISKLI 586 (922)
Q Consensus 510 ~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~L~ 586 (922)
..+..+++++.|++++|.+..++. ...+++|++|++++|.+..+++..|..+++|++|+|++| .+..+|. .+.+++
T Consensus 93 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~ 171 (452)
T 3zyi_A 93 DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVP 171 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCT
T ss_pred HHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCC
Confidence 346778999999999999988764 377999999999999999999998999999999999999 7888775 688999
Q ss_pred cCCeeeecc-CCccccch-hhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchH
Q 042817 587 SLQYLNLSS-TGIRVLPE-ELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILI 664 (922)
Q Consensus 587 ~L~~L~L~~-~~i~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 664 (922)
+|++|++++ +.+..+|. .+..+++|++|++++|. +..+|. +..+++|++|++++|... ....
T Consensus 172 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~Ls~N~l~-------------~~~~ 235 (452)
T 3zyi_A 172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN--LTPLVGLEELEMSGNHFP-------------EIRP 235 (452)
T ss_dssp TCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCC--CTTCTTCCEEECTTSCCS-------------EECG
T ss_pred cccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccccc--ccccccccEEECcCCcCc-------------ccCc
Confidence 999999999 47778876 58899999999999997 677885 889999999999998732 2234
Q ss_pred HHhhcCCCCceEEEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeecccc
Q 042817 665 EELLCLNHLSVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVG 744 (922)
Q Consensus 665 ~~L~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~ 744 (922)
..+..+++|+.|+++ ++. ...+....+..+++|+.|++++|.+..++...+.
T Consensus 236 ~~~~~l~~L~~L~L~--------------------------~n~--l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 287 (452)
T 3zyi_A 236 GSFHGLSSLKKLWVM--------------------------NSQ--VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287 (452)
T ss_dssp GGGTTCTTCCEEECT--------------------------TSC--CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSST
T ss_pred ccccCccCCCEEEeC--------------------------CCc--CceECHHHhcCCCCCCEEECCCCcCCccChHHhc
Confidence 456666666666654 222 1112222367789999999999988776555443
Q ss_pred cccCCCCCccCCcccEEEEecCC
Q 042817 745 EIRKTPETSRFHNLHRVGIVNCK 767 (922)
Q Consensus 745 ~~~~~~~~~~l~~L~~L~L~~c~ 767 (922)
.+++|+.|+|++++
T Consensus 288 ---------~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 288 ---------PLRYLVELHLHHNP 301 (452)
T ss_dssp ---------TCTTCCEEECCSSC
T ss_pred ---------cccCCCEEEccCCC
Confidence 37899999999874
No 60
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.73 E-value=7.4e-17 Score=182.92 Aligned_cols=116 Identities=21% Similarity=0.402 Sum_probs=69.8
Q ss_pred ccceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeeecc
Q 042817 516 KGVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSS 595 (922)
Q Consensus 516 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~ 595 (922)
++++.|++++|.+..++. ..++|++|++++|.+..++.. .++|++|++++| .++.+| .++++++|++|++++
T Consensus 91 ~~L~~L~l~~n~l~~lp~--~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDN 162 (454)
T ss_dssp TTCSEEECCSSCCSSCCC--CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCS
T ss_pred CCCCEEEccCCcCCcccc--ccCCCcEEECCCCccCcccCC----CCCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCC
Confidence 466666666666666543 235666666666665554431 146666666666 555566 366666666666666
Q ss_pred CCccccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCC
Q 042817 596 TGIRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 596 ~~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 645 (922)
|.++.+|..+ .+|++|++++|. +..+|. ++++++|++|++++|.
T Consensus 163 N~l~~lp~~~---~~L~~L~L~~n~-l~~l~~--~~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 163 NSLKKLPDLP---PSLEFIAAGNNQ-LEELPE--LQNLPFLTAIYADNNS 206 (454)
T ss_dssp SCCSCCCCCC---TTCCEEECCSSC-CSSCCC--CTTCTTCCEEECCSSC
T ss_pred CcCcccCCCc---ccccEEECcCCc-CCcCcc--ccCCCCCCEEECCCCc
Confidence 6666665433 366666666664 344552 5666666666666654
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=3.1e-17 Score=174.62 Aligned_cols=218 Identities=18% Similarity=0.253 Sum_probs=152.6
Q ss_pred eEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCccc-CccccCcccCCeeeeccCC
Q 042817 519 KRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREF-PPGISKLISLQYLNLSSTG 597 (922)
Q Consensus 519 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~ 597 (922)
+.++..++.+..+|. ...++|+.|++++|.+..+++..|..+++|++|+|++| .+..+ |..++.+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCC
Confidence 456666677776654 23568888888888888888777888888888888888 66665 6778888888888888886
Q ss_pred -cccc-chhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCce
Q 042817 598 -IRVL-PEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSV 675 (922)
Q Consensus 598 -i~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~ 675 (922)
++.+ |..+..+++|++|++++|. +..++...+.++++|++|++++|.... .....+..+++|+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~l~~L~~ 157 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQA-------------LPDDTFRDLGNLTH 157 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCC-------------CCTTTTTTCTTCCE
T ss_pred CccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccc-------------cCHhHhccCCCccE
Confidence 7777 5678888888888888887 455655557888888888888876221 11122444555555
Q ss_pred EEEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeecccccccCCCCCccC
Q 042817 676 LSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPETSRF 755 (922)
Q Consensus 676 L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l 755 (922)
|+++ ++. ...+....+..+++|+.|++++|.+..+.+..+.. +
T Consensus 158 L~l~--------------------------~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------l 200 (285)
T 1ozn_A 158 LFLH--------------------------GNR--ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD---------L 200 (285)
T ss_dssp EECC--------------------------SSC--CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT---------C
T ss_pred EECC--------------------------CCc--ccccCHHHhcCccccCEEECCCCcccccCHhHccC---------c
Confidence 5543 221 00111112566788888888888877665555443 7
Q ss_pred CcccEEEEecCCCCCCCch--hhccCCCcEEEEeccc
Q 042817 756 HNLHRVGIVNCKSLKDITW--LIFAPNLRILEISYCF 790 (922)
Q Consensus 756 ~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~ 790 (922)
++|+.|+|++| .++.++. +..+++|+.|+|++++
T Consensus 201 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 201 GRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCC
Confidence 88889988887 5556653 6778888888888764
No 62
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.73 E-value=2e-17 Score=187.54 Aligned_cols=181 Identities=24% Similarity=0.302 Sum_probs=114.3
Q ss_pred ccceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeeecc
Q 042817 516 KGVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSS 595 (922)
Q Consensus 516 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~ 595 (922)
++++.|++++|.+..++... ++|++|++++|.+..+| . |+++++|++|++++| .++.+|..+ .+|++|++++
T Consensus 111 ~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~lp-~-~~~l~~L~~L~l~~N-~l~~lp~~~---~~L~~L~L~~ 182 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLP-E-LQNSSFLKIIDVDNN-SLKKLPDLP---PSLEFIAAGN 182 (454)
T ss_dssp TTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCC-C-CTTCTTCCEEECCSS-CCSCCCCCC---TTCCEEECCS
T ss_pred CCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCCCc-c-cCCCCCCCEEECCCC-cCcccCCCc---ccccEEECcC
Confidence 57777777777777655432 57777888777777766 2 777777888888777 666676543 4777777777
Q ss_pred CCccccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCce
Q 042817 596 TGIRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSV 675 (922)
Q Consensus 596 ~~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~ 675 (922)
|.++.+| .++++++|++|++++|. +..+|.. .++|++|++++|.... +..+..+++|+.
T Consensus 183 n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~----~~~L~~L~l~~n~l~~---------------lp~~~~l~~L~~ 241 (454)
T 1jl5_A 183 NQLEELP-ELQNLPFLTAIYADNNS-LKKLPDL----PLSLESIVAGNNILEE---------------LPELQNLPFLTT 241 (454)
T ss_dssp SCCSSCC-CCTTCTTCCEEECCSSC-CSSCCCC----CTTCCEEECCSSCCSS---------------CCCCTTCTTCCE
T ss_pred CcCCcCc-cccCCCCCCEEECCCCc-CCcCCCC----cCcccEEECcCCcCCc---------------ccccCCCCCCCE
Confidence 7777776 57777777777777776 4555542 2477777777765211 112556777777
Q ss_pred EEEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcc
Q 042817 676 LSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEK 737 (922)
Q Consensus 676 L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~ 737 (922)
|+++.+....++ ....+|+.|+++++.. .. +. ..+++|+.|++++|.+..
T Consensus 242 L~l~~N~l~~l~------~~~~~L~~L~l~~N~l--~~---l~-~~~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 242 IYADNNLLKTLP------DLPPSLEALNVRDNYL--TD---LP-ELPQSLTFLDVSENIFSG 291 (454)
T ss_dssp EECCSSCCSSCC------SCCTTCCEEECCSSCC--SC---CC-CCCTTCCEEECCSSCCSE
T ss_pred EECCCCcCCccc------ccccccCEEECCCCcc--cc---cC-cccCcCCEEECcCCccCc
Confidence 777655433221 1235677777776641 11 11 113567777777666544
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=6.4e-17 Score=189.06 Aligned_cols=249 Identities=19% Similarity=0.205 Sum_probs=195.0
Q ss_pred cCCccccCCCccccccceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCcc
Q 042817 502 AGVGLTEAPGIEKWKGVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPG 581 (922)
Q Consensus 502 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~ 581 (922)
.+.++..+|... .++++.|++++|.+..++. .+++|++|++++|.++.+|. .+++|++|+|++| .++.+|.
T Consensus 48 s~n~L~~lp~~l-~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N-~l~~l~~- 118 (622)
T 3g06_A 48 GESGLTTLPDCL-PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSN-PLTHLPA- 118 (622)
T ss_dssp CSSCCSCCCSCC-CTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSC-CCCCCCC-
T ss_pred cCCCcCccChhh-CCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCC-cCCCCCC-
Confidence 344455555422 2789999999999998877 68999999999999988887 6899999999999 8888987
Q ss_pred ccCcccCCeeeeccCCccccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCcc
Q 042817 582 ISKLISLQYLNLSSTGIRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGE 661 (922)
Q Consensus 582 i~~L~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 661 (922)
.+.+|++|++++|+++.+|.. +++|++|++++|. +..+|. .+++|+.|++++|....
T Consensus 119 --~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~----~~~~L~~L~L~~N~l~~------------- 175 (622)
T 3g06_A 119 --LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPA----LPSELCKLWAYNNQLTS------------- 175 (622)
T ss_dssp --CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSC-------------
T ss_pred --CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCC----ccCCCCEEECCCCCCCC-------------
Confidence 678999999999999999975 4899999999996 577775 35789999999987321
Q ss_pred chHHHhhcCCCCceEEEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeec
Q 042817 662 ILIEELLCLNHLSVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQID 741 (922)
Q Consensus 662 ~~~~~L~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~ 741 (922)
.. ..+++|+.|+++.+....++ ...++|+.|.+.++.. ..++ ..+++|+.|++++|.+..++
T Consensus 176 -l~---~~~~~L~~L~Ls~N~l~~l~------~~~~~L~~L~L~~N~l-----~~l~-~~~~~L~~L~Ls~N~L~~lp-- 237 (622)
T 3g06_A 176 -LP---MLPSGLQELSVSDNQLASLP------TLPSELYKLWAYNNRL-----TSLP-ALPSGLKELIVSGNRLTSLP-- 237 (622)
T ss_dssp -CC---CCCTTCCEEECCSSCCSCCC------CCCTTCCEEECCSSCC-----SSCC-CCCTTCCEEECCSSCCSCCC--
T ss_pred -Cc---ccCCCCcEEECCCCCCCCCC------CccchhhEEECcCCcc-----cccC-CCCCCCCEEEccCCccCcCC--
Confidence 11 45688999999876654322 2346899999998752 2221 23588999999999876653
Q ss_pred ccccccCCCCCccCCcccEEEEecCCCCCCCchhhccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCccce
Q 042817 742 CVGEIRKTPETSRFHNLHRVGIVNCKSLKDITWLIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLES 821 (922)
Q Consensus 742 ~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~ 821 (922)
..+++|+.|+|++| .++.+|. .+++|+.|+|++| .++.++. .+..+++|+.
T Consensus 238 -----------~~l~~L~~L~Ls~N-~L~~lp~--~~~~L~~L~Ls~N-~L~~lp~--------------~l~~l~~L~~ 288 (622)
T 3g06_A 238 -----------VLPSELKELMVSGN-RLTSLPM--LPSGLLSLSVYRN-QLTRLPE--------------SLIHLSSETT 288 (622)
T ss_dssp -----------CCCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS-CCCSCCG--------------GGGGSCTTCE
T ss_pred -----------CCCCcCcEEECCCC-CCCcCCc--ccccCcEEeCCCC-CCCcCCH--------------HHhhccccCE
Confidence 12689999999998 7778877 7899999999986 5666654 4667899999
Q ss_pred eecCcccc
Q 042817 822 LKLARLPN 829 (922)
Q Consensus 822 L~L~~~~~ 829 (922)
|+|++++-
T Consensus 289 L~L~~N~l 296 (622)
T 3g06_A 289 VNLEGNPL 296 (622)
T ss_dssp EECCSCCC
T ss_pred EEecCCCC
Confidence 99998754
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.72 E-value=1.8e-17 Score=178.63 Aligned_cols=236 Identities=22% Similarity=0.250 Sum_probs=174.5
Q ss_pred cCCccccCCCccccccceEEeeeccccccccc--ccCCCCceEEEeccCcccccc--hhhhccCCCceEEEccCCCCCcc
Q 042817 502 AGVGLTEAPGIEKWKGVKRMSLMNNKIRNLSE--PATCPHLLTLFLQNNRLSNIT--ANFFQFMPSLKVLNLSNNFSLRE 577 (922)
Q Consensus 502 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~l~~L~~L~L~~~~~l~~ 577 (922)
.+.++..+|. .-.+++++|++++|.+..++. ...+++|++|++++|.+.... +..+..+++|++|+|++| .+..
T Consensus 15 ~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~ 92 (306)
T 2z66_A 15 NSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVIT 92 (306)
T ss_dssp CSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEE
T ss_pred CCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-cccc
Confidence 3444555554 234689999999999998876 368999999999999887553 334667999999999999 8889
Q ss_pred cCccccCcccCCeeeeccCCccccch--hhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcc
Q 042817 578 FPPGISKLISLQYLNLSSTGIRVLPE--ELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSV 655 (922)
Q Consensus 578 lp~~i~~L~~L~~L~L~~~~i~~lp~--~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 655 (922)
+|..+..+++|++|++++|.++.+|. .+..+++|++|++++|.. ...+...+.++++|++|++++|....
T Consensus 93 l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~------- 164 (306)
T 2z66_A 93 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQE------- 164 (306)
T ss_dssp EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCC-EECSTTTTTTCTTCCEEECTTCEEGG-------
T ss_pred ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcC-CccchhhcccCcCCCEEECCCCcccc-------
Confidence 99999999999999999999998875 789999999999999985 44544558999999999999986321
Q ss_pred cccCccchHHHhhcCCCCceEEEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCC
Q 042817 656 LFNGGEILIEELLCLNHLSVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSF 735 (922)
Q Consensus 656 ~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~ 735 (922)
...+..+..+++|+.|++ +++.. .......+..+++|+.|++++|.+
T Consensus 165 -----~~~~~~~~~l~~L~~L~L--------------------------s~n~l--~~~~~~~~~~l~~L~~L~L~~N~l 211 (306)
T 2z66_A 165 -----NFLPDIFTELRNLTFLDL--------------------------SQCQL--EQLSPTAFNSLSSLQVLNMSHNNF 211 (306)
T ss_dssp -----GEECSCCTTCTTCCEEEC--------------------------TTSCC--CEECTTTTTTCTTCCEEECTTSCC
T ss_pred -----ccchhHHhhCcCCCEEEC--------------------------CCCCc--CCcCHHHhcCCCCCCEEECCCCcc
Confidence 012223445555555554 43321 111122366788899999999887
Q ss_pred cceeecccccccCCCCCccCCcccEEEEecCCCCCCC-c-hhhccC-CCcEEEEeccc
Q 042817 736 EKLQIDCVGEIRKTPETSRFHNLHRVGIVNCKSLKDI-T-WLIFAP-NLRILEISYCF 790 (922)
Q Consensus 736 ~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-~-~l~~l~-~L~~L~L~~c~ 790 (922)
..++...+. .+++|+.|+|++|. +... + .+..++ +|+.|+|++++
T Consensus 212 ~~~~~~~~~---------~l~~L~~L~L~~N~-l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 212 FSLDTFPYK---------CLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp SBCCSGGGT---------TCTTCCEEECTTSC-CCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CccChhhcc---------CcccCCEeECCCCC-CcccCHHHHHhhhccCCEEEccCCC
Confidence 765443433 37899999999884 4433 2 356664 89999998764
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.71 E-value=2e-17 Score=176.07 Aligned_cols=213 Identities=22% Similarity=0.341 Sum_probs=164.4
Q ss_pred CCccccCCCccccccceEEeeeccccccccc--ccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCccc-C
Q 042817 503 GVGLTEAPGIEKWKGVKRMSLMNNKIRNLSE--PATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREF-P 579 (922)
Q Consensus 503 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~l-p 579 (922)
+.++..+|. ...+++++|++++|.+..++. ...+++|++|++++|.+..+.+..|.++++|++|++++|..+..+ |
T Consensus 20 ~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~ 98 (285)
T 1ozn_A 20 QQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98 (285)
T ss_dssp SSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred cCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCH
Confidence 344555543 335689999999999998875 478999999999999999988878999999999999999547776 6
Q ss_pred ccccCcccCCeeeeccCCcccc-chhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCccccc
Q 042817 580 PGISKLISLQYLNLSSTGIRVL-PEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFN 658 (922)
Q Consensus 580 ~~i~~L~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 658 (922)
..+..+++|++|++++|.++.+ |..+.++++|++|++++|. +..+|...++++++|++|++++|....
T Consensus 99 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~---------- 167 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISS---------- 167 (285)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCE----------
T ss_pred HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccc----------
Confidence 7899999999999999999987 5678999999999999997 577877768999999999999986321
Q ss_pred CccchHHHhhcCCCCceEEEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcce
Q 042817 659 GGEILIEELLCLNHLSVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKL 738 (922)
Q Consensus 659 ~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l 738 (922)
.....+..+++|+.|+++ ++.. .......+..+++|+.|++++|.+..+
T Consensus 168 ---~~~~~~~~l~~L~~L~l~--------------------------~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~ 216 (285)
T 1ozn_A 168 ---VPERAFRGLHSLDRLLLH--------------------------QNRV--AHVHPHAFRDLGRLMTLYLFANNLSAL 216 (285)
T ss_dssp ---ECTTTTTTCTTCCEEECC--------------------------SSCC--CEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred ---cCHHHhcCccccCEEECC--------------------------CCcc--cccCHhHccCcccccEeeCCCCcCCcC
Confidence 122234556666666554 3320 111122366788999999999988776
Q ss_pred eecccccccCCCCCccCCcccEEEEecCC
Q 042817 739 QIDCVGEIRKTPETSRFHNLHRVGIVNCK 767 (922)
Q Consensus 739 ~~~~~~~~~~~~~~~~l~~L~~L~L~~c~ 767 (922)
++..+.. +++|+.|+|++++
T Consensus 217 ~~~~~~~---------l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 217 PTEALAP---------LRALQYLRLNDNP 236 (285)
T ss_dssp CHHHHTT---------CTTCCEEECCSSC
T ss_pred CHHHccc---------CcccCEEeccCCC
Confidence 5554443 7899999999874
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=5.7e-17 Score=185.78 Aligned_cols=239 Identities=16% Similarity=0.106 Sum_probs=171.5
Q ss_pred cCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeeeccCCccccchhhccCCCCCEE
Q 042817 535 ATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSSTGIRVLPEELKALKDLSYL 614 (922)
Q Consensus 535 ~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~l~~l~~L~~L 614 (922)
..+++|++|++++|.+..+++..|..+++|++|+|++| .+...++ ++.+++|++|+|++|.++.+|.. ++|++|
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L 104 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIETL 104 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCCEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcCEE
Confidence 35568999999999999988888999999999999999 7776665 89999999999999999888743 899999
Q ss_pred eCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCceEEEEEechhHHHHHhhccc
Q 042817 615 NMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSVLSVCLESDQALRKFLSSYR 694 (922)
Q Consensus 615 ~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~l~~~~~ 694 (922)
++++|. +..+|. ..+++|++|++++|.... .....+..++
T Consensus 105 ~L~~N~-l~~~~~---~~l~~L~~L~L~~N~l~~-------------~~~~~~~~l~----------------------- 144 (487)
T 3oja_A 105 HAANNN-ISRVSC---SRGQGKKNIYLANNKITM-------------LRDLDEGCRS----------------------- 144 (487)
T ss_dssp ECCSSC-CCCEEE---CCCSSCEEEECCSSCCCS-------------GGGBCGGGGS-----------------------
T ss_pred ECcCCc-CCCCCc---cccCCCCEEECCCCCCCC-------------CCchhhcCCC-----------------------
Confidence 999997 456654 357889999999887321 1111223334
Q ss_pred ccCcceEEEEcCccccccccccccc-ccccccceeeecccCCcceeecccccccCCCCCccCCcccEEEEecCCCCCCC-
Q 042817 695 LKSSTQTLRLRKLKKESESLRTLSL-TDMEKLRNLFIADSSFEKLQIDCVGEIRKTPETSRFHNLHRVGIVNCKSLKDI- 772 (922)
Q Consensus 695 ~~~~L~~L~l~~~~~~~~~~~~l~l-~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l- 772 (922)
+|+.|+++++.. .......+ ..+++|+.|++++|.+..++.. ..+++|+.|+|++| .++.+
T Consensus 145 ---~L~~L~Ls~N~l--~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~-----------~~l~~L~~L~Ls~N-~l~~~~ 207 (487)
T 3oja_A 145 ---RVQYLDLKLNEI--DTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-----------VVFAKLKTLDLSSN-KLAFMG 207 (487)
T ss_dssp ---SEEEEECTTSCC--CEEEGGGGGGGTTTCCEEECTTSCCCEEECC-----------CCCTTCCEEECCSS-CCCEEC
T ss_pred ---CCCEEECCCCCC--CCcChHHHhhhCCcccEEecCCCcccccccc-----------ccCCCCCEEECCCC-CCCCCC
Confidence 444555554431 11111223 3678999999999988765221 13789999999998 55555
Q ss_pred chhhccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCccceeecCccccc-cccccCCcCCCCccEEEecCC
Q 042817 773 TWLIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLESLKLARLPNL-ESVYWTPLSFSHLKEIRIFKC 851 (922)
Q Consensus 773 ~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L-~~l~~~~~~~p~L~~L~i~~C 851 (922)
+.+..+++|+.|+|++| .+..++. ....+++|+.|++++++.. ..++.....++.|+.+.+..+
T Consensus 208 ~~~~~l~~L~~L~Ls~N-~l~~lp~--------------~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~ 272 (487)
T 3oja_A 208 PEFQSAAGVTWISLRNN-KLVLIEK--------------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (487)
T ss_dssp GGGGGGTTCSEEECTTS-CCCEECT--------------TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHcCCCCccEEEecCC-cCcccch--------------hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecccc
Confidence 45788999999999986 4665543 4566899999999987654 234334455777887777633
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.70 E-value=4.7e-17 Score=175.97 Aligned_cols=239 Identities=15% Similarity=0.125 Sum_probs=181.2
Q ss_pred CceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccC-ccccCcccCCeeeeccCCccccchhhccCCCCCEEeCC
Q 042817 539 HLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFP-PGISKLISLQYLNLSSTGIRVLPEELKALKDLSYLNME 617 (922)
Q Consensus 539 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~ 617 (922)
.+..++++.+.+...+...+..+++|++|+|++| .+..++ ..++.+++|++|++++|.++.+++ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence 3556667777777777777888889999999999 777665 679999999999999999987775 8999999999999
Q ss_pred CCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCceEEEEEechhHHHHHhhcccccC
Q 042817 618 RTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSVLSVCLESDQALRKFLSSYRLKS 697 (922)
Q Consensus 618 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ 697 (922)
+|. +..+|. .++|++|++++|.... .. ...+ .
T Consensus 89 ~n~-l~~l~~-----~~~L~~L~l~~n~l~~-------------~~---~~~~--------------------------~ 120 (317)
T 3o53_A 89 NNY-VQELLV-----GPSIETLHAANNNISR-------------VS---CSRG--------------------------Q 120 (317)
T ss_dssp SSE-EEEEEE-----CTTCCEEECCSSCCSE-------------EE---ECCC--------------------------S
T ss_pred CCc-cccccC-----CCCcCEEECCCCccCC-------------cC---cccc--------------------------C
Confidence 997 565553 4899999999887321 00 0012 3
Q ss_pred cceEEEEcCcccccccccccccccccccceeeecccCCcceeecccccccCCCCCccCCcccEEEEecCCCCCCCchhhc
Q 042817 698 STQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPETSRFHNLHRVGIVNCKSLKDITWLIF 777 (922)
Q Consensus 698 ~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~ 777 (922)
+|+.|.++++. ...+....+..+++|+.|++++|.+..+.+..+. ..+++|+.|+|++| .++.++....
T Consensus 121 ~L~~L~l~~N~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--------~~l~~L~~L~L~~N-~l~~~~~~~~ 189 (317)
T 3o53_A 121 GKKNIYLANNK--ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA--------ASSDTLEHLNLQYN-FIYDVKGQVV 189 (317)
T ss_dssp SCEEEECCSSC--CCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG--------GGTTTCCEEECTTS-CCCEEECCCC
T ss_pred CCCEEECCCCC--CCCccchhhhccCCCCEEECCCCCCCcccHHHHh--------hccCcCCEEECCCC-cCcccccccc
Confidence 45666666654 2223333467789999999999988876555432 13789999999998 6777776777
Q ss_pred cCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCccceeecCccccccccccCCcCCCCccEEEecCCCCC
Q 042817 778 APNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLESLKLARLPNLESVYWTPLSFSHLKEIRIFKCPRL 854 (922)
Q Consensus 778 l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C~~L 854 (922)
+++|+.|+|++| .++.++. ....+++|+.|+++++ .++.++.....+++|+.|++++++--
T Consensus 190 l~~L~~L~Ls~N-~l~~l~~--------------~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 190 FAKLKTLDLSSN-KLAFMGP--------------EFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CTTCCEEECCSS-CCCEECG--------------GGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred cccCCEEECCCC-cCCcchh--------------hhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCcc
Confidence 999999999986 5666544 3556899999999986 67788877777899999999987643
No 68
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=2.1e-16 Score=169.92 Aligned_cols=190 Identities=21% Similarity=0.321 Sum_probs=94.6
Q ss_pred CCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeeeccCCccccchhhccCCCCCEEe
Q 042817 536 TCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSSTGIRVLPEELKALKDLSYLN 615 (922)
Q Consensus 536 ~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~ 615 (922)
.+++|+.|++++|.+..++. +..+++|++|++++| .+..+|. ++.+++|++|++++|.++.+| .+..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred HcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence 34444445555444444331 444555555555555 4444444 455555555555555555443 344555555555
Q ss_pred CCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCceEEEEEechhHHHHHhhcccc
Q 042817 616 MERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSVLSVCLESDQALRKFLSSYRL 695 (922)
Q Consensus 616 l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~l~~~~~~ 695 (922)
+++|. +..+|. +.++++|++|++++|.... +..+..+++|+.|+++
T Consensus 114 l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~---------------~~~l~~l~~L~~L~l~---------------- 159 (308)
T 1h6u_A 114 LTSTQ-ITDVTP--LAGLSNLQVLYLDLNQITN---------------ISPLAGLTNLQYLSIG---------------- 159 (308)
T ss_dssp CTTSC-CCCCGG--GTTCTTCCEEECCSSCCCC---------------CGGGGGCTTCCEEECC----------------
T ss_pred CCCCC-CCCchh--hcCCCCCCEEECCCCccCc---------------CccccCCCCccEEEcc----------------
Confidence 55554 333433 4455555555555543110 0002333333333322
Q ss_pred cCcceEEEEcCcccccccccccccccccccceeeecccCCcceeecccccccCCCCCccCCcccEEEEecCCCCCCCchh
Q 042817 696 KSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPETSRFHNLHRVGIVNCKSLKDITWL 775 (922)
Q Consensus 696 ~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l 775 (922)
++.. ..+. .+..+++|+.|++++|.+..++. + ..+++|+.|+|++| .+..++++
T Consensus 160 ----------~n~l--~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l---------~~l~~L~~L~L~~N-~l~~~~~l 213 (308)
T 1h6u_A 160 ----------NAQV--SDLT--PLANLSKLTTLKADDNKISDISP--L---------ASLPNLIEVHLKNN-QISDVSPL 213 (308)
T ss_dssp ----------SSCC--CCCG--GGTTCTTCCEEECCSSCCCCCGG--G---------GGCTTCCEEECTTS-CCCBCGGG
T ss_pred ----------CCcC--CCCh--hhcCCCCCCEEECCCCccCcChh--h---------cCCCCCCEEEccCC-ccCccccc
Confidence 1110 0000 14455666777776666554322 2 23677788888777 56666667
Q ss_pred hccCCCcEEEEeccc
Q 042817 776 IFAPNLRILEISYCF 790 (922)
Q Consensus 776 ~~l~~L~~L~L~~c~ 790 (922)
..+++|+.|+++++.
T Consensus 214 ~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 214 ANTSNLFIVTLTNQT 228 (308)
T ss_dssp TTCTTCCEEEEEEEE
T ss_pred cCCCCCCEEEccCCe
Confidence 778888888887753
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.68 E-value=1e-17 Score=180.79 Aligned_cols=153 Identities=20% Similarity=0.179 Sum_probs=97.4
Q ss_pred cccceEEeeecccccccccccCCCCceEEEeccCcccc--cchhhhc-------cCCCceEEEccCCCCCc-ccCccc--
Q 042817 515 WKGVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSN--ITANFFQ-------FMPSLKVLNLSNNFSLR-EFPPGI-- 582 (922)
Q Consensus 515 ~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~-------~l~~L~~L~L~~~~~l~-~lp~~i-- 582 (922)
.++++.+++.+|.+ .+|.. -...|+.|++++|.+.. ++.. +. ++++|++|+|++| .+. .+|..+
T Consensus 42 ~~~L~~l~l~~n~l-~~p~~-~~~~L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE-ADLGQ-FTDIIKSLSLKRLTVRAARIPSR-ILFGALRVLGISGLQELTLENL-EVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT-CCCHH-HHHHHHHCCCCEEEEEEEECBHH-HHHHHHHHHTTSCCCEEEEEEE-BCBSCCCCCSSS
T ss_pred CCCceeEeeccccc-ccHHH-HHHHHhhcccccccccCCCcCHH-HHHHHHHhcCcCCccEEEccCC-cccchhHHHHHH
Confidence 34566666667766 44432 01127777777776643 2332 22 5778888888888 454 677765
Q ss_pred cCcccCCeeeeccCCccccchhhccC-----CCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccc
Q 042817 583 SKLISLQYLNLSSTGIRVLPEELKAL-----KDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLF 657 (922)
Q Consensus 583 ~~L~~L~~L~L~~~~i~~lp~~l~~l-----~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 657 (922)
+.+++|++|++++|.++.+|..++.+ ++|++|++++|. +..+|...++++++|++|++++|....
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------- 187 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELG--------- 187 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCH---------
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCc---------
Confidence 77888888888888888777777766 788888888886 455654447788888888888776321
Q ss_pred cCccchHHHh--hcCCCCceEEEEEech
Q 042817 658 NGGEILIEEL--LCLNHLSVLSVCLESD 683 (922)
Q Consensus 658 ~~~~~~~~~L--~~L~~L~~L~l~~~~~ 683 (922)
....+..+ ..+++|+.|+++.+..
T Consensus 188 --~~~~~~~~~~~~l~~L~~L~L~~N~l 213 (312)
T 1wwl_A 188 --ERGLISALCPLKFPTLQVLALRNAGM 213 (312)
T ss_dssp --HHHHHHHSCTTSCTTCCEEECTTSCC
T ss_pred --chHHHHHHHhccCCCCCEEECCCCcC
Confidence 01122333 5566666666654443
No 70
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.68 E-value=4.4e-17 Score=192.98 Aligned_cols=319 Identities=13% Similarity=0.090 Sum_probs=185.1
Q ss_pred ccccceEEeeeccccccccc------ccCCCCceEEEeccCcccccc----hhhhccCCCceEEEccCCCCCcccCcccc
Q 042817 514 KWKGVKRMSLMNNKIRNLSE------PATCPHLLTLFLQNNRLSNIT----ANFFQFMPSLKVLNLSNNFSLREFPPGIS 583 (922)
Q Consensus 514 ~~~~l~~l~l~~~~~~~~~~------~~~~~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~L~~~~~l~~lp~~i~ 583 (922)
.+++++.|++.+|.+.+... ...+++|++|++++|.+..+. +..+.++++|++|++++| .+..+|..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHh
Confidence 34566666666665443211 134566666666666554222 223455666677776666 5555666666
Q ss_pred CcccCCeeeeccCCc----cccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccC
Q 042817 584 KLISLQYLNLSSTGI----RVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNG 659 (922)
Q Consensus 584 ~L~~L~~L~L~~~~i----~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 659 (922)
.+++|++|++++... ...+..+..+++|+.|+++++. ...+|.. +..+++|++|++++|. +.
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~-~~~~~~L~~L~Ls~~~-l~----------- 306 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPIL-FPFAAQIRKLDLLYAL-LE----------- 306 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGG-GGGGGGCCEEEETTCC-CC-----------
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHH-HhhcCCCcEEecCCCc-CC-----------
Confidence 666666666664311 1333455666667777666653 3455553 6778888888888876 21
Q ss_pred ccchHHHhhcCCCCceEEEEEechhHHHHHhhcccccCcceEEEEcC----------ccccccccccc---c-ccccccc
Q 042817 660 GEILIEELLCLNHLSVLSVCLESDQALRKFLSSYRLKSSTQTLRLRK----------LKKESESLRTL---S-LTDMEKL 725 (922)
Q Consensus 660 ~~~~~~~L~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~----------~~~~~~~~~~l---~-l~~~~~L 725 (922)
.......+..+++|+.|++.. . .....+......+++|+.|++.+ |. .+... . ...+++|
T Consensus 307 ~~~~~~~~~~~~~L~~L~L~~-~-~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~----~~~~~~~~~l~~~~~~L 380 (592)
T 3ogk_B 307 TEDHCTLIQKCPNLEVLETRN-V-IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEG----LVSQRGLIALAQGCQEL 380 (592)
T ss_dssp HHHHHHHHTTCTTCCEEEEEG-G-GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTC----CCCHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhCcCCCEEeccC-c-cCHHHHHHHHHhCCCCCEEEeecCccccccccccC----ccCHHHHHHHHhhCccC
Confidence 112234467899999999982 2 22222222333456899999995 43 22211 1 3458899
Q ss_pred ceeeecccCCcceeecccccccCCCCCccCCcccEEEEec---CCCCCCCc-------hhhccCCCcEEEEecccc-chh
Q 042817 726 RNLFIADSSFEKLQIDCVGEIRKTPETSRFHNLHRVGIVN---CKSLKDIT-------WLIFAPNLRILEISYCFE-MTE 794 (922)
Q Consensus 726 ~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~---c~~l~~l~-------~l~~l~~L~~L~L~~c~~-l~~ 794 (922)
++|.++.+.+....+..+. ..+++|+.|++++ |..++..| .+..+++|+.|+|++|.. +..
T Consensus 381 ~~L~l~~~~l~~~~~~~l~--------~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~ 452 (592)
T 3ogk_B 381 EYMAVYVSDITNESLESIG--------TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD 452 (592)
T ss_dssp SEEEEEESCCCHHHHHHHH--------HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH
T ss_pred eEEEeecCCccHHHHHHHH--------hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH
Confidence 9999966665442222221 1267899999984 45666542 145688999999987654 222
Q ss_pred hhcccccccccccCCCCCCccCCccceeecCccccccc--cccCCcCCCCccEEEecCCCCCCC--CCCC-CCcccccce
Q 042817 795 IISQAKVDEFGATAGNHHQIPFAKLESLKLARLPNLES--VYWTPLSFSHLKEIRIFKCPRLWK--LPLD-SNSAKERKI 869 (922)
Q Consensus 795 i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~--l~~~~~~~p~L~~L~i~~C~~L~~--lp~~-~~~~~l~~l 869 (922)
.... .....+++|+.|.|++|. +.. ++.....+++|+.|++++|+ ++. ++.. ...+.++.+
T Consensus 453 ~~~~------------~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L 518 (592)
T 3ogk_B 453 LGLS------------YIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYL 518 (592)
T ss_dssp HHHH------------HHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEE
T ss_pred HHHH------------HHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCee
Confidence 1110 012236778888887764 332 22222456788888888887 542 2221 123456778
Q ss_pred EEEccc
Q 042817 870 VIKGEI 875 (922)
Q Consensus 870 ~I~g~~ 875 (922)
.+++|+
T Consensus 519 ~ls~n~ 524 (592)
T 3ogk_B 519 WVQGYR 524 (592)
T ss_dssp EEESCB
T ss_pred ECcCCc
Confidence 888775
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.66 E-value=8.2e-16 Score=163.51 Aligned_cols=130 Identities=18% Similarity=0.187 Sum_probs=112.5
Q ss_pred ccccccceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCee
Q 042817 512 IEKWKGVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYL 591 (922)
Q Consensus 512 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 591 (922)
+..+++++.+++.++.+..+|... .++++.|++++|.+..+++..|..+++|++|+|++| .++.+|.. +.+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEE
Confidence 345567889999999998887543 378999999999999888888999999999999999 78888764 789999999
Q ss_pred eeccCCccccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCC
Q 042817 592 NLSSTGIRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 592 ~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 645 (922)
++++|.++.+|..+..+++|++|++++|. +..+|.+.+.++++|++|++++|.
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~ 135 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNE 135 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSC
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCC
Confidence 99999999999999999999999999997 577877668999999999999886
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.66 E-value=1e-15 Score=161.25 Aligned_cols=126 Identities=21% Similarity=0.386 Sum_probs=91.3
Q ss_pred cceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCcc-ccCcccCCeeeecc
Q 042817 517 GVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPG-ISKLISLQYLNLSS 595 (922)
Q Consensus 517 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~L~~ 595 (922)
+.+.++++++.+..+|... .++|+.|++++|.+..+++..|.++++|++|+|++| .++.+|.. +..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCC
Confidence 3566777777777766432 256788888888777777766777888888888887 66676655 36778888888888
Q ss_pred CCccccchh-hccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCC
Q 042817 596 TGIRVLPEE-LKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 596 ~~i~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 645 (922)
|.++.+|.. +..+++|++|++++|. +..+|...+.++++|++|++++|.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~ 144 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNE 144 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCc
Confidence 887777653 5777788888888776 456665556777778888777765
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=8.7e-17 Score=184.25 Aligned_cols=237 Identities=15% Similarity=0.097 Sum_probs=175.9
Q ss_pred ccccceEEeeeccccccccc--ccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCee
Q 042817 514 KWKGVKRMSLMNNKIRNLSE--PATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYL 591 (922)
Q Consensus 514 ~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 591 (922)
.+++++.|++++|.+..+++ ...+++|++|++++|.+...++ +..+++|++|+|++| .++.+|. .++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEE----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCC----CCCcCEE
Confidence 34589999999999998764 4789999999999999987776 899999999999999 8887774 3899999
Q ss_pred eeccCCccccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhh-cC
Q 042817 592 NLSSTGIRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELL-CL 670 (922)
Q Consensus 592 ~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L 670 (922)
++++|.++.+|.. .+++|++|++++|.. ..+++..++++++|++|++++|.... ..+..+. .+
T Consensus 105 ~L~~N~l~~~~~~--~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~-------------~~~~~l~~~l 168 (487)
T 3oja_A 105 HAANNNISRVSCS--RGQGKKNIYLANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDT-------------VNFAELAASS 168 (487)
T ss_dssp ECCSSCCCCEEEC--CCSSCEEEECCSSCC-CSGGGBCGGGGSSEEEEECTTSCCCE-------------EEGGGGGGGT
T ss_pred ECcCCcCCCCCcc--ccCCCCEEECCCCCC-CCCCchhhcCCCCCCEEECCCCCCCC-------------cChHHHhhhC
Confidence 9999999988764 578999999999984 55544448899999999999987321 1223332 45
Q ss_pred CCCceEEEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeecccccccCCC
Q 042817 671 NHLSVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTP 750 (922)
Q Consensus 671 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~ 750 (922)
++|+.|+++ ++.. ..+ .....+++|+.|++++|.+..+++. +.
T Consensus 169 ~~L~~L~Ls--------------------------~N~l--~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~------ 211 (487)
T 3oja_A 169 DTLEHLNLQ--------------------------YNFI--YDV--KGQVVFAKLKTLDLSSNKLAFMGPE-FQ------ 211 (487)
T ss_dssp TTCCEEECT--------------------------TSCC--CEE--ECCCCCTTCCEEECCSSCCCEECGG-GG------
T ss_pred CcccEEecC--------------------------CCcc--ccc--cccccCCCCCEEECCCCCCCCCCHh-Hc------
Confidence 566655554 3321 011 1233578999999999988776444 32
Q ss_pred CCccCCcccEEEEecCCCCCCCc-hhhccCCCcEEEEeccccc-hhhhcccccccccccCCCCCCccCCccceeecCccc
Q 042817 751 ETSRFHNLHRVGIVNCKSLKDIT-WLIFAPNLRILEISYCFEM-TEIISQAKVDEFGATAGNHHQIPFAKLESLKLARLP 828 (922)
Q Consensus 751 ~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l-~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~ 828 (922)
.+++|+.|+|++| .+..+| .+..+++|+.|++++++-. ..++. ....+++|+.|.+..+.
T Consensus 212 ---~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~--------------~~~~l~~L~~l~~~~~~ 273 (487)
T 3oja_A 212 ---SAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD--------------FFSKNQRVQTVAKQTVK 273 (487)
T ss_dssp ---GGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBCHHHHHH--------------HHTTCHHHHHHHHHHHH
T ss_pred ---CCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCcCcchHH--------------HHHhCCCCcEEeccccc
Confidence 3789999999998 555555 4778899999999987543 12322 34457778777775433
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.66 E-value=2.5e-16 Score=169.29 Aligned_cols=196 Identities=17% Similarity=0.248 Sum_probs=148.2
Q ss_pred hccCCCceEEEccCCCCCcccCccccCcccCCeeeeccCCccccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCC
Q 042817 558 FQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSSTGIRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLR 637 (922)
Q Consensus 558 ~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~ 637 (922)
+..+++|++|++++| .+..+| .+..+++|++|++++|.++.+|. +..+++|++|++++|. +..+|. +.++++|+
T Consensus 37 ~~~l~~L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSA--IAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGG--GTTCTTCC
T ss_pred HHHcCCcCEEEeeCC-CccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCchh--hcCCCCCC
Confidence 456889999999999 888888 68999999999999999999988 9999999999999997 677764 89999999
Q ss_pred EEEeecCCcccccccCcccccCccchHHHhhcCCCCceEEEEEechhHHHHHhhcccccCcceEEEEcCccccccccccc
Q 042817 638 VLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTL 717 (922)
Q Consensus 638 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l 717 (922)
+|++++|.... +..+..+++|+.|+++ ++.. ..+.
T Consensus 111 ~L~l~~n~l~~---------------~~~l~~l~~L~~L~l~--------------------------~n~l--~~~~-- 145 (308)
T 1h6u_A 111 TLDLTSTQITD---------------VTPLAGLSNLQVLYLD--------------------------LNQI--TNIS-- 145 (308)
T ss_dssp EEECTTSCCCC---------------CGGGTTCTTCCEEECC--------------------------SSCC--CCCG--
T ss_pred EEECCCCCCCC---------------chhhcCCCCCCEEECC--------------------------CCcc--CcCc--
Confidence 99999987321 1125566666666554 2220 0111
Q ss_pred ccccccccceeeecccCCcceeecccccccCCCCCccCCcccEEEEecCCCCCCCchhhccCCCcEEEEeccccchhhhc
Q 042817 718 SLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPETSRFHNLHRVGIVNCKSLKDITWLIFAPNLRILEISYCFEMTEIIS 797 (922)
Q Consensus 718 ~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~ 797 (922)
.+..+++|+.|++++|.+..++. + ..+++|+.|++++| .++.++.+..+++|+.|++++| .+..++
T Consensus 146 ~l~~l~~L~~L~l~~n~l~~~~~--l---------~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N-~l~~~~- 211 (308)
T 1h6u_A 146 PLAGLTNLQYLSIGNAQVSDLTP--L---------ANLSKLTTLKADDN-KISDISPLASLPNLIEVHLKNN-QISDVS- 211 (308)
T ss_dssp GGGGCTTCCEEECCSSCCCCCGG--G---------TTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECTTS-CCCBCG-
T ss_pred cccCCCCccEEEccCCcCCCChh--h---------cCCCCCCEEECCCC-ccCcChhhcCCCCCCEEEccCC-ccCccc-
Confidence 15677889999999887765432 2 23788999999888 6777777888999999999886 344442
Q ss_pred ccccccccccCCCCCCccCCccceeecCcccccccc
Q 042817 798 QAKVDEFGATAGNHHQIPFAKLESLKLARLPNLESV 833 (922)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~l 833 (922)
....+++|+.|++++++ +...
T Consensus 212 --------------~l~~l~~L~~L~l~~N~-i~~~ 232 (308)
T 1h6u_A 212 --------------PLANTSNLFIVTLTNQT-ITNQ 232 (308)
T ss_dssp --------------GGTTCTTCCEEEEEEEE-EECC
T ss_pred --------------cccCCCCCCEEEccCCe-eecC
Confidence 24567888888888754 3443
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.66 E-value=6e-16 Score=159.95 Aligned_cols=112 Identities=19% Similarity=0.336 Sum_probs=71.8
Q ss_pred ccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCc-cccCcccCCeeeecc-CCccccch-h
Q 042817 528 IRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPP-GISKLISLQYLNLSS-TGIRVLPE-E 604 (922)
Q Consensus 528 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L~~-~~i~~lp~-~ 604 (922)
+..+|. -.++|+.|++++|.++.+++..|.++++|++|++++|..++.+|. .++++++|++|++++ |.++.+|. .
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 444444 334677777777777666666666777777777777632666554 566677777777776 66766653 4
Q ss_pred hccCCCCCEEeCCCCccccccChhhhCCCCCCC---EEEeecC
Q 042817 605 LKALKDLSYLNMERTSFVRRIPRQLISNFPLLR---VLRMLDC 644 (922)
Q Consensus 605 l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~---~L~l~~~ 644 (922)
+..+++|++|++++|. +..+|. +..+++|+ +|++++|
T Consensus 101 f~~l~~L~~L~l~~n~-l~~lp~--~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTG-LKMFPD--LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp EECCTTCCEEEEEEEC-CCSCCC--CTTCCBCCSEEEEEEESC
T ss_pred hCCCCCCCEEeCCCCC-Cccccc--cccccccccccEEECCCC
Confidence 6667777777777765 455664 56666666 6666665
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.65 E-value=5.3e-16 Score=160.32 Aligned_cols=82 Identities=22% Similarity=0.393 Sum_probs=46.6
Q ss_pred CceEEEccCCCCCcccCc-cccCcccCCeeeeccCC-ccccch-hhccCCCCCEEeCCCCccccccChhhhCCCCCCCEE
Q 042817 563 SLKVLNLSNNFSLREFPP-GISKLISLQYLNLSSTG-IRVLPE-ELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVL 639 (922)
Q Consensus 563 ~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~-i~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L 639 (922)
+|++|++++| .++.+|. .++++++|++|++++|. ++.+|. .+..+++|++|++++|..+..+|...+.++++|++|
T Consensus 32 ~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 5666666666 5555544 45556666666666664 555554 455666666666665222455554445566666666
Q ss_pred EeecCC
Q 042817 640 RMLDCG 645 (922)
Q Consensus 640 ~l~~~~ 645 (922)
++++|.
T Consensus 111 ~l~~n~ 116 (239)
T 2xwt_C 111 GIFNTG 116 (239)
T ss_dssp EEEEEC
T ss_pred eCCCCC
Confidence 666554
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.65 E-value=3.2e-16 Score=165.38 Aligned_cols=119 Identities=18% Similarity=0.396 Sum_probs=62.6
Q ss_pred eeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeeeccCCcccc
Q 042817 522 SLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSSTGIRVL 601 (922)
Q Consensus 522 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~l 601 (922)
++..+.+........+++|+.|++.+|.+..++. +..+++|++|++++| .+..+| .++.+++|++|++++|.++.+
T Consensus 25 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n~l~~~ 100 (272)
T 3rfs_A 25 NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTGNQLQSL 100 (272)
T ss_dssp HHTCSCTTSEECHHHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTTSCCCCC
T ss_pred HhcCcccccccccccccceeeeeeCCCCcccccc--cccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCCCccCcc
Confidence 3333333333333445555555555555544432 455556666666655 444443 455555666666666655555
Q ss_pred chh-hccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCC
Q 042817 602 PEE-LKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 602 p~~-l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 645 (922)
|.. ++.+++|++|++++|. +..+|...+.++++|++|++++|.
T Consensus 101 ~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~ 144 (272)
T 3rfs_A 101 PNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQ 144 (272)
T ss_dssp CTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCc
Confidence 433 4555666666666554 344444445555556666555554
No 78
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.65 E-value=4e-17 Score=186.95 Aligned_cols=313 Identities=19% Similarity=0.161 Sum_probs=184.1
Q ss_pred cccceEEeeeccccccccc--c-cCCC----CceEEEeccCccccc----chhhhccCCCceEEEccCCCCCcc-cCccc
Q 042817 515 WKGVKRMSLMNNKIRNLSE--P-ATCP----HLLTLFLQNNRLSNI----TANFFQFMPSLKVLNLSNNFSLRE-FPPGI 582 (922)
Q Consensus 515 ~~~l~~l~l~~~~~~~~~~--~-~~~~----~L~~L~l~~~~l~~~----~~~~~~~l~~L~~L~L~~~~~l~~-lp~~i 582 (922)
++++++|++++|.+..... . ..++ +|++|++++|.+... .+..+..+++|++|+|++| .+.. .+..+
T Consensus 55 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l 133 (461)
T 1z7x_W 55 NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLL 133 (461)
T ss_dssp CTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHH
T ss_pred CCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHH
Confidence 4567778887777654211 1 2223 688888888876632 2445677778888888877 4442 12222
Q ss_pred c-----CcccCCeeeeccCCccc-----cchhhccCCCCCEEeCCCCccccccChh----hhCCCCCCCEEEeecCCccc
Q 042817 583 S-----KLISLQYLNLSSTGIRV-----LPEELKALKDLSYLNMERTSFVRRIPRQ----LISNFPLLRVLRMLDCGALE 648 (922)
Q Consensus 583 ~-----~L~~L~~L~L~~~~i~~-----lp~~l~~l~~L~~L~l~~~~~l~~lp~~----~i~~l~~L~~L~l~~~~~~~ 648 (922)
. .+.+|++|++++|.++. ++..+..+++|++|++++|......+.. ....+++|++|++++|....
T Consensus 134 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 213 (461)
T 1z7x_W 134 CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS 213 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred HHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence 2 24568888888877763 4566777788888888887632221211 11235678888888776221
Q ss_pred ccccCcccccCccchHHHhhcCCCCceEEEEEechhH--HHHHhhc-ccccCcceEEEEcCccccccccccc--cccccc
Q 042817 649 RAEHGSVLFNGGEILIEELLCLNHLSVLSVCLESDQA--LRKFLSS-YRLKSSTQTLRLRKLKKESESLRTL--SLTDME 723 (922)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~--~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~l--~l~~~~ 723 (922)
.........+..+++|+.|+++.+.... ...+... .....+|+.|++++|.........+ .+..++
T Consensus 214 ---------~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 284 (461)
T 1z7x_W 214 ---------DNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE 284 (461)
T ss_dssp ---------THHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT
T ss_pred ---------HHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCC
Confidence 0011235567778888988888765433 2222221 1235688899998886322222112 255678
Q ss_pred ccceeeecccCCcceeecccccccCCCCCccCCcccEEEEecCCCCCCC------chhhccCCCcEEEEeccccchhhhc
Q 042817 724 KLRNLFIADSSFEKLQIDCVGEIRKTPETSRFHNLHRVGIVNCKSLKDI------TWLIFAPNLRILEISYCFEMTEIIS 797 (922)
Q Consensus 724 ~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l------~~l~~l~~L~~L~L~~c~~l~~i~~ 797 (922)
+|++|++++|.+....+..+... -....++|+.|+|++|. ++.. ..+..+++|+.|+|++| .+.+...
T Consensus 285 ~L~~L~Ls~n~i~~~~~~~l~~~----l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~ 358 (461)
T 1z7x_W 285 SLKELSLAGNELGDEGARLLCET----LLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGV 358 (461)
T ss_dssp TCCEEECTTCCCHHHHHHHHHHH----HTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHH
T ss_pred CcceEECCCCCCchHHHHHHHHH----hccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccH
Confidence 89999999887654222221110 00113689999999884 4432 23556799999999887 4554422
Q ss_pred ccccccccccCCCCCCccCCccceeecCcccccc-----ccccCCcCCCCccEEEecCCC
Q 042817 798 QAKVDEFGATAGNHHQIPFAKLESLKLARLPNLE-----SVYWTPLSFSHLKEIRIFKCP 852 (922)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~-----~l~~~~~~~p~L~~L~i~~C~ 852 (922)
..... ......++|++|++++|. +. .++.....+++|++|++++|+
T Consensus 359 ~~l~~--------~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 359 RELCQ--------GLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHH--------HHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred HHHHH--------HHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 10000 001125789999998874 44 444444457899999998874
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.64 E-value=7.4e-16 Score=162.57 Aligned_cols=132 Identities=23% Similarity=0.404 Sum_probs=115.8
Q ss_pred CCccccccceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCcc-ccCcccC
Q 042817 510 PGIEKWKGVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPG-ISKLISL 588 (922)
Q Consensus 510 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L 588 (922)
.....+++++.|++.++.+..++....+++|++|++++|.+..++ .+..+++|++|++++| .++.+|.. ++.+++|
T Consensus 35 ~~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 35 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNL 111 (272)
T ss_dssp ECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTC
T ss_pred cccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCC-ccCccChhHhcCCcCC
Confidence 344566789999999999999888899999999999999988864 4889999999999999 77777654 6899999
Q ss_pred CeeeeccCCccccchh-hccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCC
Q 042817 589 QYLNLSSTGIRVLPEE-LKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 589 ~~L~L~~~~i~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 645 (922)
++|++++|.++.+|.. ++.+++|++|++++|. +..+|...++++++|++|++++|.
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~ 168 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQ 168 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCC
Confidence 9999999999988765 7899999999999997 578887767899999999999886
No 80
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.64 E-value=1e-16 Score=183.54 Aligned_cols=259 Identities=17% Similarity=0.185 Sum_probs=134.2
Q ss_pred ccceEEeeeccccccccc---ccCCCCceEEEeccCccccc----chhhhccCCCceEEEccCCCCCcc-cCccc-cCcc
Q 042817 516 KGVKRMSLMNNKIRNLSE---PATCPHLLTLFLQNNRLSNI----TANFFQFMPSLKVLNLSNNFSLRE-FPPGI-SKLI 586 (922)
Q Consensus 516 ~~l~~l~l~~~~~~~~~~---~~~~~~L~~L~l~~~~l~~~----~~~~~~~l~~L~~L~L~~~~~l~~-lp~~i-~~L~ 586 (922)
++++.|+++++.+...+. ...+++|++|++++|.+... .+..+..+++|++|+|++| .+.. .+..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHh
Confidence 356777777776654321 24566777777777766532 1233566677777777777 4433 22222 2233
Q ss_pred ----cCCeeeeccCCcc-----ccchhhccCCCCCEEeCCCCccccccC----hhhhCCCCCCCEEEeecCCcccccccC
Q 042817 587 ----SLQYLNLSSTGIR-----VLPEELKALKDLSYLNMERTSFVRRIP----RQLISNFPLLRVLRMLDCGALERAEHG 653 (922)
Q Consensus 587 ----~L~~L~L~~~~i~-----~lp~~l~~l~~L~~L~l~~~~~l~~lp----~~~i~~l~~L~~L~l~~~~~~~~~~~~ 653 (922)
+|++|++++|.++ .+|..+..+++|++|++++|......+ .......++|++|++++|....
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~----- 156 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA----- 156 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG-----
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH-----
Confidence 5777777777766 456667777777777777776322111 1212335567777777765221
Q ss_pred cccccCccchHHHhhcCCCCceEEEEEechhH--HHHHhhccc-ccCcceEEEEcCccccccccccc--cccccccccee
Q 042817 654 SVLFNGGEILIEELLCLNHLSVLSVCLESDQA--LRKFLSSYR-LKSSTQTLRLRKLKKESESLRTL--SLTDMEKLRNL 728 (922)
Q Consensus 654 ~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~--~~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~l--~l~~~~~L~~L 728 (922)
.........+..+++|+.|+++.+.... ...+..... ..++|+.|+++++.........+ .+..+++|+.|
T Consensus 157 ----~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 232 (461)
T 1z7x_W 157 ----ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL 232 (461)
T ss_dssp ----GGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEE
T ss_pred ----HHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEE
Confidence 0111234455566777777776554322 111211111 13367777777665322111111 14456677777
Q ss_pred eecccCCcceeecccccccCCCCCccCCcccEEEEecCCCCCC-----Cc-hhhccCCCcEEEEecc
Q 042817 729 FIADSSFEKLQIDCVGEIRKTPETSRFHNLHRVGIVNCKSLKD-----IT-WLIFAPNLRILEISYC 789 (922)
Q Consensus 729 ~i~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~-----l~-~l~~l~~L~~L~L~~c 789 (922)
++++|.+.......+.. .....+++|+.|++++| .++. ++ .+..+++|++|++++|
T Consensus 233 ~Ls~n~l~~~~~~~l~~----~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 233 ALGSNKLGDVGMAELCP----GLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp ECCSSBCHHHHHHHHHH----HHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred eccCCcCChHHHHHHHH----HHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 77766544321111100 00012456666666666 4443 11 2344666666666654
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.63 E-value=1.9e-15 Score=160.04 Aligned_cols=105 Identities=23% Similarity=0.249 Sum_probs=54.5
Q ss_pred CceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCc-cccCcccCCeeeeccCCccccc-hhhccCCCCCEEeC
Q 042817 539 HLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPP-GISKLISLQYLNLSSTGIRVLP-EELKALKDLSYLNM 616 (922)
Q Consensus 539 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~lp-~~l~~l~~L~~L~l 616 (922)
+|++|++++|.+..+++..|.++++|++|++++| .+..+|. .++++++|++|++++|.++.++ ..+.++++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 4555555555555555444555555555555555 4444332 4555555555555555555444 34555555555555
Q ss_pred CCCccccccChhhhCCCCCCCEEEeecCC
Q 042817 617 ERTSFVRRIPRQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 617 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 645 (922)
++|. +..++...+.++++|++|++++|.
T Consensus 108 ~~n~-l~~~~~~~~~~l~~L~~L~l~~n~ 135 (276)
T 2z62_A 108 VETN-LASLENFPIGHLKTLKELNVAHNL 135 (276)
T ss_dssp TTSC-CCCSTTCCCTTCTTCCEEECCSSC
T ss_pred CCCC-ccccCchhcccCCCCCEEECcCCc
Confidence 5554 233433224555555555555544
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.63 E-value=3.4e-15 Score=157.31 Aligned_cols=102 Identities=24% Similarity=0.369 Sum_probs=84.3
Q ss_pred CceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCc-cccCcccCCeeeeccCCccccchh-hccCCCCCEEeC
Q 042817 539 HLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPP-GISKLISLQYLNLSSTGIRVLPEE-LKALKDLSYLNM 616 (922)
Q Consensus 539 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~l 616 (922)
++++++++++.++.+|... .++|+.|+|++| .+..+|. .++++++|++|++++|.++.+|.. +..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI---PADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC---CTTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCccCCCC---CCCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 4778999999888887653 267899999998 7777765 688899999999999999988876 478899999999
Q ss_pred CCCccccccChhhhCCCCCCCEEEeecCC
Q 042817 617 ERTSFVRRIPRQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 617 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 645 (922)
++|. +..+|...+.++++|++|++++|.
T Consensus 93 ~~n~-l~~~~~~~~~~l~~L~~L~l~~n~ 120 (270)
T 2o6q_A 93 TDNK-LQALPIGVFDQLVNLAELRLDRNQ 120 (270)
T ss_dssp CSSC-CCCCCTTTTTTCSSCCEEECCSSC
T ss_pred CCCc-CCcCCHhHcccccCCCEEECCCCc
Confidence 9987 577777767889999999998876
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.63 E-value=3.9e-16 Score=170.56 Aligned_cols=81 Identities=17% Similarity=0.179 Sum_probs=42.6
Q ss_pred CCceEEEccCCCCCcccCccccCcccCCeeeeccCCccc--cchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEE
Q 042817 562 PSLKVLNLSNNFSLREFPPGISKLISLQYLNLSSTGIRV--LPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVL 639 (922)
Q Consensus 562 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~--lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L 639 (922)
+++++|++++| .+...+..+..+++|++|++++|.++. +|..+..+++|++|++++|......|.. ++++++|++|
T Consensus 70 ~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEE
T ss_pred ccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH-HhcCCCCCEE
Confidence 55555555555 444444444555555555555555542 5555555555555555555432233333 4555555666
Q ss_pred EeecC
Q 042817 640 RMLDC 644 (922)
Q Consensus 640 ~l~~~ 644 (922)
++++|
T Consensus 148 ~L~~~ 152 (336)
T 2ast_B 148 NLSGC 152 (336)
T ss_dssp ECTTC
T ss_pred ECCCC
Confidence 55555
No 84
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.62 E-value=6.3e-16 Score=183.03 Aligned_cols=308 Identities=14% Similarity=0.112 Sum_probs=206.1
Q ss_pred ccccceEEeeecccccccc-----cc-cCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCC---cccCccccC
Q 042817 514 KWKGVKRMSLMNNKIRNLS-----EP-ATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSL---REFPPGISK 584 (922)
Q Consensus 514 ~~~~l~~l~l~~~~~~~~~-----~~-~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l---~~lp~~i~~ 584 (922)
.+++++.|++++|.+..+. .. ..+++|++|++++|.+..++ ..+..+++|+.|+++++... ...+..++.
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 4578999999999886322 22 57899999999999888866 55899999999999865232 345567888
Q ss_pred cccCCeeeeccCCccccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchH
Q 042817 585 LISLQYLNLSSTGIRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILI 664 (922)
Q Consensus 585 L~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 664 (922)
+++|+.|+++++....+|..+..+++|++|++++|..........+.++++|++|++.++- .+....
T Consensus 269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~-------------~~~~l~ 335 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVI-------------GDRGLE 335 (592)
T ss_dssp CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGG-------------HHHHHH
T ss_pred cccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCcc-------------CHHHHH
Confidence 9999999999988888999999999999999999973222233446899999999998432 112223
Q ss_pred HHhhcCCCCceEEEEE----------echhHHHHHhhcccccCcceEEEEcCcccccccccccccc-cccccceeeeccc
Q 042817 665 EELLCLNHLSVLSVCL----------ESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLT-DMEKLRNLFIADS 733 (922)
Q Consensus 665 ~~L~~L~~L~~L~l~~----------~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~-~~~~L~~L~i~~~ 733 (922)
.-...+++|+.|++.. +.......+......+++|+.|.+..+...... ...+. .+++|+.|+++++
T Consensus 336 ~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~--~~~l~~~~~~L~~L~l~~~ 413 (592)
T 3ogk_B 336 VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES--LESIGTYLKNLCDFRLVLL 413 (592)
T ss_dssp HHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHH--HHHHHHHCCSCCEEEEEEC
T ss_pred HHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHH--HHHHHhhCCCCcEEEEeec
Confidence 3346789999999983 222221222222234578999999443311111 11233 4889999999754
Q ss_pred C----Ccceeec-ccccccCCCCCccCCcccEEEEecCCC-CCC--Cchhh-ccCCCcEEEEeccccchhhhcccccccc
Q 042817 734 S----FEKLQID-CVGEIRKTPETSRFHNLHRVGIVNCKS-LKD--ITWLI-FAPNLRILEISYCFEMTEIISQAKVDEF 804 (922)
Q Consensus 734 ~----~~~l~~~-~~~~~~~~~~~~~l~~L~~L~L~~c~~-l~~--l~~l~-~l~~L~~L~L~~c~~l~~i~~~~~~~~~ 804 (922)
. +...+.+ .+. .....+++|+.|+|+.|.. +.. +..++ .+++|+.|+|++|. ++.....
T Consensus 414 ~~~n~l~~~p~~~~~~-----~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~------ 481 (592)
T 3ogk_B 414 DREERITDLPLDNGVR-----SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLM------ 481 (592)
T ss_dssp SCCSCCSSCCCHHHHH-----HHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHH------
T ss_pred CCCccccCchHHHHHH-----HHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHH------
Confidence 2 2211110 000 0012378999999988754 332 22333 48999999999875 4432110
Q ss_pred cccCCCCCCccCCccceeecCccccccc--cccCCcCCCCccEEEecCCCCCCCC
Q 042817 805 GATAGNHHQIPFAKLESLKLARLPNLES--VYWTPLSFSHLKEIRIFKCPRLWKL 857 (922)
Q Consensus 805 ~~~~~~~~~~~fp~L~~L~L~~~~~L~~--l~~~~~~~p~L~~L~i~~C~~L~~l 857 (922)
.....+++|++|+|++|+ +.. ++.....+|+|+.|++++|+ ++.-
T Consensus 482 ------~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~ 528 (592)
T 3ogk_B 482 ------EFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMT 528 (592)
T ss_dssp ------HHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTT
T ss_pred ------HHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHH
Confidence 123467999999999997 432 22223458999999999997 6654
No 85
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.61 E-value=4.6e-15 Score=157.00 Aligned_cols=140 Identities=24% Similarity=0.286 Sum_probs=118.1
Q ss_pred CCccccCCCccccccceEEeeeccccccccc--ccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccC-
Q 042817 503 GVGLTEAPGIEKWKGVKRMSLMNNKIRNLSE--PATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFP- 579 (922)
Q Consensus 503 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp- 579 (922)
+.+...+|.. -.+++++|++++|.+..++. ...+++|++|++++|.+..+++..|.++++|++|+|++| .+..+|
T Consensus 16 ~~~l~~ip~~-l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~ 93 (276)
T 2z62_A 16 ELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLAL 93 (276)
T ss_dssp TSCCSSCCSS-SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECT
T ss_pred CCCccccCCC-CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccCh
Confidence 3344445541 23579999999999998774 478999999999999999999888999999999999999 676665
Q ss_pred ccccCcccCCeeeeccCCccccch-hhccCCCCCEEeCCCCccccc--cChhhhCCCCCCCEEEeecCCc
Q 042817 580 PGISKLISLQYLNLSSTGIRVLPE-ELKALKDLSYLNMERTSFVRR--IPRQLISNFPLLRVLRMLDCGA 646 (922)
Q Consensus 580 ~~i~~L~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~~ 646 (922)
..++++++|++|++++|.+..++. .++.+++|++|++++|.. .. +|.. +.++++|++|++++|..
T Consensus 94 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~l~~~-~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI-QSFKLPEY-FSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCC-CCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCcc-ceecCchh-hccCCCCCEEECCCCCC
Confidence 679999999999999999998876 689999999999999974 44 5665 89999999999999873
No 86
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.61 E-value=3.9e-15 Score=167.61 Aligned_cols=307 Identities=13% Similarity=0.084 Sum_probs=183.0
Q ss_pred CcccchhhHHHHHHHHh-cc------CCeeEEEE--EcCCCCcHHHHHHHHHHHhhhc--cCCCc-eEEEEEeCCCCCHH
Q 042817 157 PRIIGQESIFDDAWRCM-IE------EQVGIIGL--YGAGGVGKTTLLKQLNNKLCQE--RHDFD-IVIWVVVSKDLNLE 224 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L-~~------~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~--~~~F~-~~~wv~~s~~~~~~ 224 (922)
..++||+.+++++.+.+ .. ...+.+.| +|++|+||||||+++++..... ...|+ .++|+++....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 67999999999999988 42 23456666 9999999999999999886211 01122 46788887778889
Q ss_pred HHHHHHHhhccCCcccccCCChhhhHHHHHHHhc--CCcEEEEEccCCCcc--------ccccccccC---CCCC--CCc
Q 042817 225 KVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILS--NKKFVLLLDDMWEPV--------DLTKVGVPI---PNST--NAS 289 (922)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~--------~~~~l~~~~---~~~~--~gs 289 (922)
.++..++.+++..... ...+..+....+.+.+. +++++|||||++... .+..+...+ +..+ ...
T Consensus 102 ~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQV-RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHTCCCCC-TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 9999999988654211 12334555666777765 689999999997632 122221111 1112 344
Q ss_pred EEEEEcCChhhhcccc---------ccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhC------Cch
Q 042817 290 KVVFTTRYKEVCGKME---------AHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECG------GLP 354 (922)
Q Consensus 290 ~IivTtR~~~v~~~~~---------~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~------glP 354 (922)
.||+||+...+...+. ....+.+++++.++++++|...+.... ....-..+....|++.|+ |.|
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~G~p 259 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGL-RDTVWEPRHLELISDVYGEDKGGDGSA 259 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHB-CTTSCCHHHHHHHHHHHCGGGTSCCCH
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcC-CCCCCChHHHHHHHHHHHHhccCCCcH
Confidence 5888887655321111 112399999999999999976542111 001122567889999999 999
Q ss_pred hHHHHHHhhh---c--cC---CCHHHHHHHHHHHhccCCCCCCccchhhhhhhhcCCCCCchhhhhhhhcccCC--CCCc
Q 042817 355 LAIITIGRAM---S--CK---NKLEEWKHAVNVLKKSSSKFPGMDAMYPHLKFSYDRLPDNKIRSCFLYCSLFP--EDYK 424 (922)
Q Consensus 355 Lai~~~g~~L---~--~~---~~~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s~fp--~~~~ 424 (922)
..+..+.... + .. -+.+.+..+...... ...+.-++..||. +.+.++..++.+. .+..
T Consensus 260 ~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-----------~~~~~~~l~~l~~-~~~~~l~aia~l~~~~~~~ 327 (412)
T 1w5s_A 260 RRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA-----------ASIQTHELEALSI-HELIILRLIAEATLGGMEW 327 (412)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-----------------CCSSSSSCH-HHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-----------cchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCC
Confidence 7655544321 1 11 123333333322110 1234456788998 7888888888654 2334
Q ss_pred cCHHHHHHHHhhcC--CccccccchhhHhhHHHHHHHHHHhcccccc-----CcceEEEccee
Q 042817 425 ISKEDLIDCWIGEE--FFDEEHNGIGARNEGYAIIGDLIRTCLLEED-----ADDFVELHDVV 480 (922)
Q Consensus 425 i~~~~li~~W~a~g--~i~~~~~~~~~~~~~~~~~~~L~~~sll~~~-----~~~~~~mHdlv 480 (922)
++..++...+.... .... ..........+++.|.+.+++... ..+.|++|++.
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 328 INAGLLRQRYEDASLTMYNV---KPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp BCHHHHHHHHHHHHHHHSCC---CCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred ccHHHHHHHHHHHHHhhcCC---CCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 55555544432110 0000 001124456789999999999764 23456677666
No 87
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.61 E-value=6.9e-15 Score=161.28 Aligned_cols=98 Identities=15% Similarity=0.175 Sum_probs=64.1
Q ss_pred ccceeeecccCCcceeecccccccCCCCCccCCcccEEEEecCCCCCCCch--hhccCCCcEEEEeccccchhhhccccc
Q 042817 724 KLRNLFIADSSFEKLQIDCVGEIRKTPETSRFHNLHRVGIVNCKSLKDITW--LIFAPNLRILEISYCFEMTEIISQAKV 801 (922)
Q Consensus 724 ~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~i~~~~~~ 801 (922)
.++.|++++|.+..++...+. ..+|+.|.+.++..++.+|. +..+++|+.|+|+++ .++.++.
T Consensus 155 ~l~~L~L~~N~i~~i~~~~f~----------~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~---- 219 (350)
T 4ay9_X 155 ESVILWLNKNGIQEIHNSAFN----------GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS---- 219 (350)
T ss_dssp SCEEEECCSSCCCEECTTSST----------TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCS----
T ss_pred hhhhhccccccccCCChhhcc----------ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccCh----
Confidence 466677777766655433322 45677777777667777764 567778888888774 4655532
Q ss_pred ccccccCCCCCCccCCccceeecCccccccccccCCcCCCCccEEEec
Q 042817 802 DEFGATAGNHHQIPFAKLESLKLARLPNLESVYWTPLSFSHLKEIRIF 849 (922)
Q Consensus 802 ~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~ 849 (922)
..|.+|+.|.+.++.+++.+|. ...+++|+.+++.
T Consensus 220 ------------~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 220 ------------YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLT 254 (350)
T ss_dssp ------------SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECS
T ss_pred ------------hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCC
Confidence 3466777777777777777763 4457777777775
No 88
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.60 E-value=3.9e-16 Score=184.90 Aligned_cols=320 Identities=17% Similarity=0.118 Sum_probs=156.8
Q ss_pred cccceEEeeecccccc-----cccc-cCCCCceEEEeccCcccccc----hhhhccCCCceEEEccCCCCCcccCccccC
Q 042817 515 WKGVKRMSLMNNKIRN-----LSEP-ATCPHLLTLFLQNNRLSNIT----ANFFQFMPSLKVLNLSNNFSLREFPPGISK 584 (922)
Q Consensus 515 ~~~l~~l~l~~~~~~~-----~~~~-~~~~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~ 584 (922)
+++++.|++++|.+.. ++.. ..+++|++|++++|. ..+. ...+..+++|++|++++|..+..+|..+..
T Consensus 155 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~ 233 (594)
T 2p1m_B 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR 233 (594)
T ss_dssp CTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHH
T ss_pred CCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhc
Confidence 4456666666555433 1111 245566666666554 1111 112234466666666665444455555555
Q ss_pred cccCCeeeeccC-------CccccchhhccCCCCCEE-eCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCccc
Q 042817 585 LISLQYLNLSST-------GIRVLPEELKALKDLSYL-NMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVL 656 (922)
Q Consensus 585 L~~L~~L~L~~~-------~i~~lp~~l~~l~~L~~L-~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 656 (922)
+++|++|+++.+ .+..++..+.++++|+.| .+.+.. ...+|.. +..+++|++|++++|. +.
T Consensus 234 ~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~-~~~~~~L~~L~L~~~~-l~-------- 302 (594)
T 2p1m_B 234 APQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV-PAYLPAV-YSVCSRLTTLNLSYAT-VQ-------- 302 (594)
T ss_dssp CTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC-GGGGGGG-HHHHTTCCEEECTTCC-CC--------
T ss_pred CCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccc-hhhHHHH-HHhhCCCCEEEccCCC-CC--------
Confidence 666666654333 233444455555555555 233222 1233332 3467788888888776 21
Q ss_pred ccCccchHHHhhcCCCCceEEEEEechhHHHHHhhcccccCcceEEEEcCccc----cccccccc---c-ccccccccee
Q 042817 657 FNGGEILIEELLCLNHLSVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKK----ESESLRTL---S-LTDMEKLRNL 728 (922)
Q Consensus 657 ~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~----~~~~~~~l---~-l~~~~~L~~L 728 (922)
......-+..+++|+.|++..+- ....+......+++|+.|++..+.. ....+... . ...+++|++|
T Consensus 303 ---~~~l~~~~~~~~~L~~L~l~~~~--~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L 377 (594)
T 2p1m_B 303 ---SYDLVKLLCQCPKLQRLWVLDYI--EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV 377 (594)
T ss_dssp ---HHHHHHHHTTCTTCCEEEEEGGG--HHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEE
T ss_pred ---HHHHHHHHhcCCCcCEEeCcCcc--CHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHH
Confidence 11123335678888888887551 1122222223356788888854310 00011111 1 2347788888
Q ss_pred eecccCCcceeecccccccCCCCCccCCcccEEEEe-----cCCCCCCCch-------hhccCCCcEEEEeccccchhhh
Q 042817 729 FIADSSFEKLQIDCVGEIRKTPETSRFHNLHRVGIV-----NCKSLKDITW-------LIFAPNLRILEISYCFEMTEII 796 (922)
Q Consensus 729 ~i~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~-----~c~~l~~l~~-------l~~l~~L~~L~L~~c~~l~~i~ 796 (922)
.+.++.+....+..+. ..+++|+.|+|+ +|..++..|. +..+++|+.|+|++ .+....
T Consensus 378 ~~~~~~l~~~~~~~l~--------~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~ 447 (594)
T 2p1m_B 378 LYFCRQMTNAALITIA--------RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKV 447 (594)
T ss_dssp EEEESCCCHHHHHHHH--------HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHH
T ss_pred HHhcCCcCHHHHHHHH--------hhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHH
Confidence 6665554432222211 126778888887 4556664432 44567777777755 333221
Q ss_pred cccccccccccCCCCCC-ccCCccceeecCcccccccccc--CCcCCCCccEEEecCCCCCCC--CC-CCCCcccccceE
Q 042817 797 SQAKVDEFGATAGNHHQ-IPFAKLESLKLARLPNLESVYW--TPLSFSHLKEIRIFKCPRLWK--LP-LDSNSAKERKIV 870 (922)
Q Consensus 797 ~~~~~~~~~~~~~~~~~-~~fp~L~~L~L~~~~~L~~l~~--~~~~~p~L~~L~i~~C~~L~~--lp-~~~~~~~l~~l~ 870 (922)
. ... ..+++|+.|.|++|. +..... ....+|+|+.|++++|+. +. ++ .....+.++.+.
T Consensus 448 ~-------------~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~ 512 (594)
T 2p1m_B 448 F-------------EYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLW 512 (594)
T ss_dssp H-------------HHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEE
T ss_pred H-------------HHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEe
Confidence 1 011 125666666666654 211100 012356666666666653 22 11 111124456666
Q ss_pred EEcccc
Q 042817 871 IKGEID 876 (922)
Q Consensus 871 I~g~~~ 876 (922)
+.+|+.
T Consensus 513 l~~~~~ 518 (594)
T 2p1m_B 513 MSSCSV 518 (594)
T ss_dssp EESSCC
T ss_pred eeCCCC
Confidence 666643
No 89
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.60 E-value=1.5e-16 Score=171.54 Aligned_cols=243 Identities=20% Similarity=0.242 Sum_probs=154.1
Q ss_pred CCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCc--ccCcccc-------CcccCCeeeeccCCcc-ccchhh
Q 042817 536 TCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLR--EFPPGIS-------KLISLQYLNLSSTGIR-VLPEEL 605 (922)
Q Consensus 536 ~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~--~lp~~i~-------~L~~L~~L~L~~~~i~-~lp~~l 605 (922)
..++|+.|++++|.+ .+|...... |++|+|++| .+. .+|..+. ++++|++|++++|.++ .+|..+
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~~~~~~---L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLGQFTDI---IKSLSLKRL-TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCHHHHHH---HHHCCCCEE-EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred cCCCceeEeeccccc-ccHHHHHHH---Hhhcccccc-cccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 455678888888888 667654332 888888888 554 3666555 6888999999999887 678776
Q ss_pred --ccCCCCCEEeCCCCccccccChhhhCCC-----CCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCceEEE
Q 042817 606 --KALKDLSYLNMERTSFVRRIPRQLISNF-----PLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSVLSV 678 (922)
Q Consensus 606 --~~l~~L~~L~l~~~~~l~~lp~~~i~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l 678 (922)
+.+++|++|++++|. +..+|.. +..+ ++|++|++++|... ......+..+++|+.|++
T Consensus 116 ~~~~l~~L~~L~Ls~N~-l~~~~~~-~~~l~~~~~~~L~~L~L~~N~l~-------------~~~~~~~~~l~~L~~L~L 180 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVS-WATRDAW-LAELQQWLKPGLKVLSIAQAHSL-------------NFSCEQVRVFPALSTLDL 180 (312)
T ss_dssp SSCCSCCCSEEEEESCB-CSSSSSH-HHHHHTTCCTTCCEEEEESCSCC-------------CCCTTTCCCCSSCCEEEC
T ss_pred HHhcCCCccEEEccCCC-CcchhHH-HHHHHHhhcCCCcEEEeeCCCCc-------------cchHHHhccCCCCCEEEC
Confidence 888999999999887 4555644 5555 88999999888732 123345667777777777
Q ss_pred EEechhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCccee---ecccccccCCCCCccC
Q 042817 679 CLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQ---IDCVGEIRKTPETSRF 755 (922)
Q Consensus 679 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~---~~~~~~~~~~~~~~~l 755 (922)
+.+.......+... ..+..+++|+.|++++|.+..++ ...+. .+
T Consensus 181 s~N~l~~~~~~~~~------------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~---------~l 227 (312)
T 1wwl_A 181 SDNPELGERGLISA------------------------LCPLKFPTLQVLALRNAGMETPSGVCSALAA---------AR 227 (312)
T ss_dssp CSCTTCHHHHHHHH------------------------SCTTSCTTCCEEECTTSCCCCHHHHHHHHHH---------TT
T ss_pred CCCCcCcchHHHHH------------------------HHhccCCCCCEEECCCCcCcchHHHHHHHHh---------cC
Confidence 65543221111111 11245566777777766655321 11111 25
Q ss_pred CcccEEEEecCCCCCCC---chhhccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCccceeecCccccccc
Q 042817 756 HNLHRVGIVNCKSLKDI---TWLIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLESLKLARLPNLES 832 (922)
Q Consensus 756 ~~L~~L~L~~c~~l~~l---~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~ 832 (922)
++|+.|+|+++ .++.. +.+..+++|+.|++++| .++.++. .. +++|++|+++++ .++.
T Consensus 228 ~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~--------------~~--~~~L~~L~Ls~N-~l~~ 288 (312)
T 1wwl_A 228 VQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPK--------------GL--PAKLSVLDLSYN-RLDR 288 (312)
T ss_dssp CCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCS--------------SC--CSEEEEEECCSS-CCCS
T ss_pred CCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCC-ccChhhh--------------hc--cCCceEEECCCC-CCCC
Confidence 67777777776 34332 23445677777777775 3554432 11 167788888774 5666
Q ss_pred cccCCcCCCCccEEEecCC
Q 042817 833 VYWTPLSFSHLKEIRIFKC 851 (922)
Q Consensus 833 l~~~~~~~p~L~~L~i~~C 851 (922)
++. ...+++|+.|++.+.
T Consensus 289 ~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 289 NPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp CCC-TTTSCEEEEEECTTC
T ss_pred Chh-HhhCCCCCEEeccCC
Confidence 654 556777888877764
No 90
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.59 E-value=1.2e-14 Score=159.83 Aligned_cols=292 Identities=14% Similarity=0.104 Sum_probs=174.6
Q ss_pred CCcccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCC------CHHHHHHH
Q 042817 156 EPRIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDL------NLEKVQED 229 (922)
Q Consensus 156 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~------~~~~~~~~ 229 (922)
++.|+||+.+++++.+++..+ +++.|+|++|+|||||++++++.. . .+|+++.... +...+.+.
T Consensus 11 ~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 11 REDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred hHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHHHHH
Confidence 357999999999999998764 799999999999999999999774 1 6788765432 55666666
Q ss_pred HHhhccCC--------------ccc--ccCCChhhhHHHHHHHhcC-CcEEEEEccCCCccc--------cccccccCCC
Q 042817 230 IGKKIDMF--------------SES--WKNKSPVEKSCAIFKILSN-KKFVLLLDDMWEPVD--------LTKVGVPIPN 284 (922)
Q Consensus 230 i~~~l~~~--------------~~~--~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~--------~~~l~~~~~~ 284 (922)
+.+.+... ... ....+..+....+.+..+. ++++|||||++.... +......+.+
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~ 160 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD 160 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH
Confidence 66654320 000 0112344455555555543 499999999976432 1111111111
Q ss_pred CCCCcEEEEEcCChhhhcc----------c-cc-cceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCC
Q 042817 285 STNASKVVFTTRYKEVCGK----------M-EA-HKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGG 352 (922)
Q Consensus 285 ~~~gs~IivTtR~~~v~~~----------~-~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g 352 (922)
..++.++|+|++....... . +. ...+.+.+|+.+|+.+++.......... .-.+.+..|++.|+|
T Consensus 161 ~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~---~~~~~~~~i~~~tgG 237 (350)
T 2qen_A 161 SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD---VPENEIEEAVELLDG 237 (350)
T ss_dssp HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC---CCHHHHHHHHHHHTT
T ss_pred hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHhCC
Confidence 1246789999887543111 1 11 2478999999999999998754322111 124678899999999
Q ss_pred chhHHHHHHhhhccCCCHHHHH-HHHHHHhccCCCCCCccchhhhh-hhhcCCCCCchhhhhhhhcccCCCCCccCHHHH
Q 042817 353 LPLAIITIGRAMSCKNKLEEWK-HAVNVLKKSSSKFPGMDAMYPHL-KFSYDRLPDNKIRSCFLYCSLFPEDYKISKEDL 430 (922)
Q Consensus 353 lPLai~~~g~~L~~~~~~~~w~-~~~~~l~~~~~~~~~~~~~~~~l-~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~l 430 (922)
+|+++..++..+....+...+. ...+.... .+...+ .+.+ . ++ ..+..+..+|. + .++...+
T Consensus 238 ~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~l~~-~-~~-~~~~~l~~la~---g-~~~~~~l 301 (350)
T 2qen_A 238 IPGWLVVFGVEYLRNGDFGRAMKRTLEVAKG---------LIMGELEELRR-R-SP-RYVDILRAIAL---G-YNRWSLI 301 (350)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH---------HHHHHHHHHHH-H-CH-HHHHHHHHHHT---T-CCSHHHH
T ss_pred CHHHHHHHHHHHhccccHhHHHHHHHHHHHH---------HHHHHHHHHHh-C-Ch-hHHHHHHHHHh---C-CCCHHHH
Confidence 9999999887653222222221 11111100 011111 1122 1 45 67888888887 2 2344555
Q ss_pred HHHHhhcCCccccccchhhHhhHHHHHHHHHHhccccccCcceEEE-cceeehhH
Q 042817 431 IDCWIGEEFFDEEHNGIGARNEGYAIIGDLIRTCLLEEDADDFVEL-HDVVRDMA 484 (922)
Q Consensus 431 i~~W~a~g~i~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~m-Hdlv~~~a 484 (922)
........- . ........+++.|.+.+++.... +.|.+ |++++++.
T Consensus 302 ~~~~~~~~~--~-----~~~~~~~~~l~~L~~~gli~~~~-~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 302 RDYLAVKGT--K-----IPEPRLYALLENLKKMNWIVEED-NTYKIADPVVATVL 348 (350)
T ss_dssp HHHHHHTTC--C-----CCHHHHHHHHHHHHHTTSEEEET-TEEEESSHHHHHHH
T ss_pred HHHHHHHhC--C-----CCHHHHHHHHHHHHhCCCEEecC-CEEEEecHHHHHHH
Confidence 443322100 0 11244667899999999998753 44555 55665544
No 91
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.58 E-value=1.6e-14 Score=153.59 Aligned_cols=197 Identities=20% Similarity=0.214 Sum_probs=132.9
Q ss_pred cCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCccc-CccccCcccCCeeeeccCCccccchhhccCCCCCE
Q 042817 535 ATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREF-PPGISKLISLQYLNLSSTGIRVLPEELKALKDLSY 613 (922)
Q Consensus 535 ~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~l~~l~~L~~ 613 (922)
..+++++.++++++.++.+|..+ .++|++|+|++| .+..+ |..+..+++|++|++++|.++.+|.. +.+++|++
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred cccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence 56778999999999998888764 368899999999 56655 56788999999999999999988765 78899999
Q ss_pred EeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCceEEEEEechhHHHHHhhcc
Q 042817 614 LNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSVLSVCLESDQALRKFLSSY 693 (922)
Q Consensus 614 L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~l~~~~ 693 (922)
|++++|. +..+|.. +.++++|++|++++|.... .....+..+++|+.|++
T Consensus 82 L~Ls~N~-l~~l~~~-~~~l~~L~~L~l~~N~l~~-------------l~~~~~~~l~~L~~L~L--------------- 131 (290)
T 1p9a_G 82 LDLSHNQ-LQSLPLL-GQTLPALTVLDVSFNRLTS-------------LPLGALRGLGELQELYL--------------- 131 (290)
T ss_dssp EECCSSC-CSSCCCC-TTTCTTCCEEECCSSCCCC-------------CCSSTTTTCTTCCEEEC---------------
T ss_pred EECCCCc-CCcCchh-hccCCCCCEEECCCCcCcc-------------cCHHHHcCCCCCCEEEC---------------
Confidence 9999997 5788875 7889999999999886221 11122334444444443
Q ss_pred cccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeecccccccCCCCCccCCcccEEEEecCCCCCCCc
Q 042817 694 RLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPETSRFHNLHRVGIVNCKSLKDIT 773 (922)
Q Consensus 694 ~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~ 773 (922)
+++.. ..+....+..+++|+.|++++|.+..++...+. .+++|+.|+|+++ .++.+|
T Consensus 132 -----------~~N~l--~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~---------~l~~L~~L~L~~N-~l~~ip 188 (290)
T 1p9a_G 132 -----------KGNEL--KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN---------GLENLDTLLLQEN-SLYTIP 188 (290)
T ss_dssp -----------TTSCC--CCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTT---------TCTTCCEEECCSS-CCCCCC
T ss_pred -----------CCCCC--CccChhhcccccCCCEEECCCCcCCccCHHHhc---------CcCCCCEEECCCC-cCCccC
Confidence 33220 011111245567777777777766655433332 2667777777766 444544
Q ss_pred -hhhccCCCcEEEEecc
Q 042817 774 -WLIFAPNLRILEISYC 789 (922)
Q Consensus 774 -~l~~l~~L~~L~L~~c 789 (922)
.+..+++|+.|+|+++
T Consensus 189 ~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 189 KGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp TTTTTTCCCSEEECCSC
T ss_pred hhhcccccCCeEEeCCC
Confidence 3455667777777653
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.57 E-value=6.4e-15 Score=156.77 Aligned_cols=182 Identities=21% Similarity=0.348 Sum_probs=109.0
Q ss_pred eeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeeeccCCcccc
Q 042817 522 SLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSSTGIRVL 601 (922)
Q Consensus 522 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~l 601 (922)
.+..+.+..+.....+++|+.|++++|.+..++. +..+++|++|++++| .+..+|. ++.+++|++|++++|.++.+
T Consensus 30 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~ 105 (291)
T 1h6t_A 30 NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVKDL 105 (291)
T ss_dssp HTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCG
T ss_pred HhcCCCcccccchhhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCcCCCC
Confidence 3344444444444456666666666666665543 566667777777766 5666555 66667777777777766665
Q ss_pred chhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCceEEEEEe
Q 042817 602 PEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSVLSVCLE 681 (922)
Q Consensus 602 p~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~ 681 (922)
|. +..+++|++|++++|. +..++. +.++++|++|++++|.... +.
T Consensus 106 ~~-l~~l~~L~~L~L~~n~-i~~~~~--l~~l~~L~~L~l~~n~l~~---------------~~---------------- 150 (291)
T 1h6t_A 106 SS-LKDLKKLKSLSLEHNG-ISDING--LVHLPQLESLYLGNNKITD---------------IT---------------- 150 (291)
T ss_dssp GG-GTTCTTCCEEECTTSC-CCCCGG--GGGCTTCCEEECCSSCCCC---------------CG----------------
T ss_pred hh-hccCCCCCEEECCCCc-CCCChh--hcCCCCCCEEEccCCcCCc---------------ch----------------
Confidence 53 6666677777776665 344442 5666666666666654110 00
Q ss_pred chhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeecccccccCCCCCccCCcccEE
Q 042817 682 SDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPETSRFHNLHRV 761 (922)
Q Consensus 682 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L 761 (922)
.+..+++|+.|++++|.+..+.+ + ..+++|+.|
T Consensus 151 ------------------------------------~l~~l~~L~~L~L~~N~l~~~~~--l---------~~l~~L~~L 183 (291)
T 1h6t_A 151 ------------------------------------VLSRLTKLDTLSLEDNQISDIVP--L---------AGLTKLQNL 183 (291)
T ss_dssp ------------------------------------GGGGCTTCSEEECCSSCCCCCGG--G---------TTCTTCCEE
T ss_pred ------------------------------------hhccCCCCCEEEccCCccccchh--h---------cCCCccCEE
Confidence 13344556666666665544322 2 126677777
Q ss_pred EEecCCCCCCCchhhccCCCcEEEEeccc
Q 042817 762 GIVNCKSLKDITWLIFAPNLRILEISYCF 790 (922)
Q Consensus 762 ~L~~c~~l~~l~~l~~l~~L~~L~L~~c~ 790 (922)
+|++| .++.++.+..+++|+.|+++++.
T Consensus 184 ~L~~N-~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 184 YLSKN-HISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp ECCSS-CCCBCGGGTTCTTCSEEEEEEEE
T ss_pred ECCCC-cCCCChhhccCCCCCEEECcCCc
Confidence 77776 56666677777888888887753
No 93
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.56 E-value=3.5e-14 Score=156.41 Aligned_cols=289 Identities=13% Similarity=0.122 Sum_probs=168.2
Q ss_pred CCcccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCC-----CCHHHHHHHH
Q 042817 156 EPRIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKD-----LNLEKVQEDI 230 (922)
Q Consensus 156 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-----~~~~~~~~~i 230 (922)
+..|+||+.+++++.+ +.. +++.|+|++|+|||||++++++.. .. ..+|+++... .+...+...+
T Consensus 12 ~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL---NL---PYIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH---TC---CEEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred HHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc---CC---CEEEEEchhhccccCCCHHHHHHHH
Confidence 3578999999999999 765 699999999999999999999886 22 2578887642 3445555544
Q ss_pred HhhccC--------------------Ccc--cc-----cCCChhhhHHHHHHHhcCCcEEEEEccCCCcc-----ccccc
Q 042817 231 GKKIDM--------------------FSE--SW-----KNKSPVEKSCAIFKILSNKKFVLLLDDMWEPV-----DLTKV 278 (922)
Q Consensus 231 ~~~l~~--------------------~~~--~~-----~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----~~~~l 278 (922)
.+.+.. +.. .. ...........+.+.-+ ++++|||||++... ++..+
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~ 160 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHH
Confidence 443310 000 00 01122333333333222 49999999996632 22222
Q ss_pred cccCCCCCCCcEEEEEcCChhhhcc----------c-cc-cceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHH
Q 042817 279 GVPIPNSTNASKVVFTTRYKEVCGK----------M-EA-HKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLV 346 (922)
Q Consensus 279 ~~~~~~~~~gs~IivTtR~~~v~~~----------~-~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i 346 (922)
...+.+...+.++|+|+|....... . +. ...+.+.+|+.+|+.+++...+....... .. . ..|
T Consensus 161 l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~-~~---~-~~i 235 (357)
T 2fna_A 161 LAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF-KD---Y-EVV 235 (357)
T ss_dssp HHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC-CC---H-HHH
T ss_pred HHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCC-Cc---H-HHH
Confidence 2212111246789999997653110 1 11 25789999999999999987542111111 11 2 889
Q ss_pred HHHhCCchhHHHHHHhhhccCCCHHHHHH-HHHHHhccCCCCCCccchhhhhh-hhcC--CCCCchhhhhhhhcccCCCC
Q 042817 347 AKECGGLPLAIITIGRAMSCKNKLEEWKH-AVNVLKKSSSKFPGMDAMYPHLK-FSYD--RLPDNKIRSCFLYCSLFPED 422 (922)
Q Consensus 347 ~~~c~glPLai~~~g~~L~~~~~~~~w~~-~~~~l~~~~~~~~~~~~~~~~l~-~sy~--~L~~~~~k~cfl~~s~fp~~ 422 (922)
++.|+|+|+++..++..+....+...|.. ..+.... .+...+. +.+. .|++ ..+..+..+|.-
T Consensus 236 ~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~l~~-~~~~~l~~la~g--- 302 (357)
T 2fna_A 236 YEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKK---------LILKEFENFLHGREIARK-RYLNIMRTLSKC--- 302 (357)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH---------HHHHHHHHHHTTCGGGHH-HHHHHHHHHTTC---
T ss_pred HHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHH---------HHHHHHHHHhhccccccH-HHHHHHHHHHcC---
Confidence 99999999999999877653333333321 1111000 1111111 2221 5666 788888888872
Q ss_pred CccCHHHHHHHHh-hcCCccccccchhhHhhHHHHHHHHHHhccccccCcceEEE-cceeehh
Q 042817 423 YKISKEDLIDCWI-GEEFFDEEHNGIGARNEGYAIIGDLIRTCLLEEDADDFVEL-HDVVRDM 483 (922)
Q Consensus 423 ~~i~~~~li~~W~-a~g~i~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~m-Hdlv~~~ 483 (922)
. +...+..... ..|. .........+++.|.+.+++.... ..|++ |++++++
T Consensus 303 ~--~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~ 355 (357)
T 2fna_A 303 G--KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLA 355 (357)
T ss_dssp B--CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHH
T ss_pred C--CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHh
Confidence 1 3444432210 1110 011234667899999999998754 44654 5666654
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.55 E-value=1.6e-15 Score=169.03 Aligned_cols=139 Identities=14% Similarity=0.106 Sum_probs=86.7
Q ss_pred cCCCCceEEEeccCcccccchh----hhccCCCceEEEccCCCCCc----ccCccc-------cCcccCCeeeeccCCcc
Q 042817 535 ATCPHLLTLFLQNNRLSNITAN----FFQFMPSLKVLNLSNNFSLR----EFPPGI-------SKLISLQYLNLSSTGIR 599 (922)
Q Consensus 535 ~~~~~L~~L~l~~~~l~~~~~~----~~~~l~~L~~L~L~~~~~l~----~lp~~i-------~~L~~L~~L~L~~~~i~ 599 (922)
..+++|++|++++|.+...... .+..+++|++|+|++| .+. .+|..+ ..+++|++|+|++|.++
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 5577788888888876654332 2557888888888886 333 334433 67788888888888777
Q ss_pred c-----cchhhccCCCCCEEeCCCCccccccChh---hhCCC---------CCCCEEEeecCCcccccccCcccccCccc
Q 042817 600 V-----LPEELKALKDLSYLNMERTSFVRRIPRQ---LISNF---------PLLRVLRMLDCGALERAEHGSVLFNGGEI 662 (922)
Q Consensus 600 ~-----lp~~l~~l~~L~~L~l~~~~~l~~lp~~---~i~~l---------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 662 (922)
. +|..+..+++|++|++++|......+.. .+..+ ++|++|++++|.... .....
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~---------~~~~~ 178 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN---------GSMKE 178 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG---------GGHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc---------HHHHH
Confidence 5 7777888888888888888642111111 12333 788888888776221 00111
Q ss_pred hHHHhhcCCCCceEEEEEech
Q 042817 663 LIEELLCLNHLSVLSVCLESD 683 (922)
Q Consensus 663 ~~~~L~~L~~L~~L~l~~~~~ 683 (922)
....+..+++|+.|+++.+..
T Consensus 179 l~~~l~~~~~L~~L~L~~n~l 199 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVKMVQNGI 199 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCC
T ss_pred HHHHHHhCCCcCEEECcCCCC
Confidence 224556666777777665543
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.55 E-value=2.7e-14 Score=156.58 Aligned_cols=239 Identities=16% Similarity=0.125 Sum_probs=130.5
Q ss_pred EEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCc-cccCcccCCe-eeeccCC
Q 042817 520 RMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPP-GISKLISLQY-LNLSSTG 597 (922)
Q Consensus 520 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~-L~L~~~~ 597 (922)
.++-++++++.+|..- .++++.|++++|.++.++++.|.++++|++|+|++|...+.+|. .+.++++|+. +.+++|+
T Consensus 13 ~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp EEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred EEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 3444455555554321 24566666666666666665566666666666666633344443 3455555543 4444456
Q ss_pred ccccc-hhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcC-CCCce
Q 042817 598 IRVLP-EELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCL-NHLSV 675 (922)
Q Consensus 598 i~~lp-~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L-~~L~~ 675 (922)
++.+| ..+..+++|++|++++|. +..+|...+....++..|++.++..+... ....+..+ ..++.
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l------------~~~~f~~~~~~l~~ 158 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTI------------ERNSFVGLSFESVI 158 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEE------------CTTSSTTSBSSCEE
T ss_pred ccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccc------------cccchhhcchhhhh
Confidence 66553 345666666666666665 34454433344445555555544322110 01111222 23444
Q ss_pred EEEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeecccccccCCCCCccC
Q 042817 676 LSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPETSRF 755 (922)
Q Consensus 676 L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l 755 (922)
|+++.+....+. .......+++.|.+.++.. ...+..-.+..+++|+.|++++|.+..++... |
T Consensus 159 L~L~~N~i~~i~---~~~f~~~~L~~l~l~~~n~-l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~------------~ 222 (350)
T 4ay9_X 159 LWLNKNGIQEIH---NSAFNGTQLDELNLSDNNN-LEELPNDVFHGASGPVILDISRTRIHSLPSYG------------L 222 (350)
T ss_dssp EECCSSCCCEEC---TTSSTTEEEEEEECTTCTT-CCCCCTTTTTTEECCSEEECTTSCCCCCCSSS------------C
T ss_pred hccccccccCCC---hhhccccchhHHhhccCCc-ccCCCHHHhccCcccchhhcCCCCcCccChhh------------h
Confidence 444433322211 1111223566777765441 11122223677888888888888877654322 6
Q ss_pred CcccEEEEecCCCCCCCchhhccCCCcEEEEec
Q 042817 756 HNLHRVGIVNCKSLKDITWLIFAPNLRILEISY 788 (922)
Q Consensus 756 ~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~ 788 (922)
.+|++|.+.++..++.+|.+..+++|+.+++.+
T Consensus 223 ~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 223 ENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp TTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred ccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 788888888888888888888888888888864
No 96
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.54 E-value=2.8e-15 Score=163.69 Aligned_cols=249 Identities=14% Similarity=0.152 Sum_probs=167.8
Q ss_pred CceEEEccCCCCCcccCccccCc--ccCCeeeeccCCccccchhhccCCCCCEEeCCCCccccc-cChhhhCCCCCCCEE
Q 042817 563 SLKVLNLSNNFSLREFPPGISKL--ISLQYLNLSSTGIRVLPEELKALKDLSYLNMERTSFVRR-IPRQLISNFPLLRVL 639 (922)
Q Consensus 563 ~L~~L~L~~~~~l~~lp~~i~~L--~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~l~~-lp~~~i~~l~~L~~L 639 (922)
.++.|+++++ .+. |..++.+ .+++.|++++|.+...+..+.++++|++|++++|..... +|.. +.++++|++|
T Consensus 48 ~~~~l~l~~~-~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~-~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGK-NLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI-LSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTC-BCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHH-HTTBCCCSEE
T ss_pred hheeeccccc-cCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHH-HhhCCCCCEE
Confidence 4778888887 444 4556777 899999999999998877788999999999999974333 5654 8999999999
Q ss_pred EeecCCcccccccCcccccCccchHHHhhcCCCCceEEEEEechhHHHHHhhcccccCcceEEEEcCc-ccccccccccc
Q 042817 640 RMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKL-KKESESLRTLS 718 (922)
Q Consensus 640 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~ 718 (922)
++++|.. ....+..+..+++|+.|+++.+.......+......+++|+.|++++| ......+ ...
T Consensus 124 ~L~~~~l-------------~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~ 189 (336)
T 2ast_B 124 SLEGLRL-------------SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV-QVA 189 (336)
T ss_dssp ECTTCBC-------------CHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHH-HHH
T ss_pred eCcCccc-------------CHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHH-HHH
Confidence 9999862 234567788899999999987632111122222334568999999988 4211111 112
Q ss_pred ccccc-ccceeeecccC--Ccc--eeecccccccCCCCCccCCcccEEEEecCCCCCC--CchhhccCCCcEEEEecccc
Q 042817 719 LTDME-KLRNLFIADSS--FEK--LQIDCVGEIRKTPETSRFHNLHRVGIVNCKSLKD--ITWLIFAPNLRILEISYCFE 791 (922)
Q Consensus 719 l~~~~-~L~~L~i~~~~--~~~--l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~c~~ 791 (922)
+..++ +|++|++++|. ... + +..+. .+++|+.|+|++|..++. ++.+..+++|++|+|++|..
T Consensus 190 ~~~l~~~L~~L~l~~~~~~~~~~~l-~~~~~---------~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 259 (336)
T 2ast_B 190 VAHVSETITQLNLSGYRKNLQKSDL-STLVR---------RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD 259 (336)
T ss_dssp HHHSCTTCCEEECCSCGGGSCHHHH-HHHHH---------HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred HHhcccCCCEEEeCCCcccCCHHHH-HHHHh---------hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC
Confidence 56778 99999999884 321 2 11222 378999999999865543 45678889999999998864
Q ss_pred chhhhcccccccccccCCCCCCccCCccceeecCccccccccccCCcCC-CCccEEEecCCCCCCCC
Q 042817 792 MTEIISQAKVDEFGATAGNHHQIPFAKLESLKLARLPNLESVYWTPLSF-SHLKEIRIFKCPRLWKL 857 (922)
Q Consensus 792 l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~l~~~~~~~-p~L~~L~i~~C~~L~~l 857 (922)
+..... .....+|+|+.|++++| +..-. ...+ .+|..|++ +|++++..
T Consensus 260 ~~~~~~-------------~~l~~~~~L~~L~l~~~--i~~~~--~~~l~~~l~~L~l-~~n~l~~~ 308 (336)
T 2ast_B 260 IIPETL-------------LELGEIPTLKTLQVFGI--VPDGT--LQLLKEALPHLQI-NCSHFTTI 308 (336)
T ss_dssp CCGGGG-------------GGGGGCTTCCEEECTTS--SCTTC--HHHHHHHSTTSEE-SCCCSCCT
T ss_pred CCHHHH-------------HHHhcCCCCCEEeccCc--cCHHH--HHHHHhhCcceEE-ecccCccc
Confidence 332211 13456889999999887 22211 1111 23455556 45677763
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.54 E-value=2.2e-15 Score=167.86 Aligned_cols=220 Identities=17% Similarity=0.222 Sum_probs=133.1
Q ss_pred cccccchhhhccCCCceEEEccCCCCCcc-----cCccccCcccCCeeeeccCCcc----ccchhh-------ccCCCCC
Q 042817 549 RLSNITANFFQFMPSLKVLNLSNNFSLRE-----FPPGISKLISLQYLNLSSTGIR----VLPEEL-------KALKDLS 612 (922)
Q Consensus 549 ~l~~~~~~~~~~l~~L~~L~L~~~~~l~~-----lp~~i~~L~~L~~L~L~~~~i~----~lp~~l-------~~l~~L~ 612 (922)
.+..++.. +..+++|++|+|++| .+.. ++..+..+++|++|+|++|.+. .+|..+ ..+++|+
T Consensus 20 ~~~~l~~~-l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~ 97 (386)
T 2ca6_A 20 DEKSVFAV-LLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH 97 (386)
T ss_dssp HHHTTSHH-HHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCC
T ss_pred HHHHHHHH-HhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCccc
Confidence 34344443 778899999999999 5543 4455778999999999997555 345444 7889999
Q ss_pred EEeCCCCcccc----ccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcC---------CCCceEEEE
Q 042817 613 YLNMERTSFVR----RIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCL---------NHLSVLSVC 679 (922)
Q Consensus 613 ~L~l~~~~~l~----~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L---------~~L~~L~l~ 679 (922)
+|++++|.... .+|.. +.++++|++|++++|..... ........+..+ ++|+.|+++
T Consensus 98 ~L~Ls~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~---------~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~ 167 (386)
T 2ca6_A 98 TVRLSDNAFGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGPQ---------AGAKIARALQELAVNKKAKNAPPLRSIICG 167 (386)
T ss_dssp EEECCSCCCCTTTHHHHHHH-HHHCTTCCEEECCSSCCHHH---------HHHHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred EEECCCCcCCHHHHHHHHHH-HHhCCCCCEEECcCCCCCHH---------HHHHHHHHHHHHhhhhhcccCCCCcEEECC
Confidence 99999997543 25654 78899999999999873210 011122234444 778888777
Q ss_pred Eechh--HHHHHhhcccccCcceEEEEcCccccccccccc---ccccccccceeeecccCCcc----eeecccccccCCC
Q 042817 680 LESDQ--ALRKFLSSYRLKSSTQTLRLRKLKKESESLRTL---SLTDMEKLRNLFIADSSFEK----LQIDCVGEIRKTP 750 (922)
Q Consensus 680 ~~~~~--~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~l~~~~~L~~L~i~~~~~~~----l~~~~~~~~~~~~ 750 (922)
.+... .++.+.......++|+.|.++++.....++..+ .+..+++|+.|++++|.+.. ..+..+.
T Consensus 168 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~------ 241 (386)
T 2ca6_A 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK------ 241 (386)
T ss_dssp SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG------
T ss_pred CCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc------
Confidence 66542 344333334445567777777765321111111 35566777777777776531 1111222
Q ss_pred CCccCCcccEEEEecCCCCCCC------chh--hccCCCcEEEEeccc
Q 042817 751 ETSRFHNLHRVGIVNCKSLKDI------TWL--IFAPNLRILEISYCF 790 (922)
Q Consensus 751 ~~~~l~~L~~L~L~~c~~l~~l------~~l--~~l~~L~~L~L~~c~ 790 (922)
.+++|+.|+|++|. ++.. ..+ +.+++|+.|+|++|.
T Consensus 242 ---~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 242 ---SWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp ---GCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred ---cCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 25667777777663 3332 122 226677777776653
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.53 E-value=9.9e-15 Score=170.38 Aligned_cols=117 Identities=22% Similarity=0.393 Sum_probs=63.8
Q ss_pred EeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeeeccCCccc
Q 042817 521 MSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSSTGIRV 600 (922)
Q Consensus 521 l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~ 600 (922)
+.+..+.+..+.....+++|+.|++++|.+..++. +..+++|+.|+|++| .+..+|+ ++.+++|++|+|++|.++.
T Consensus 26 l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~ 101 (605)
T 1m9s_A 26 DNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENKIKD 101 (605)
T ss_dssp HHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSCCCC
T ss_pred HhccCCCcccccchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCCCCC
Confidence 33334444444444455555666666655555442 555666666666665 5555554 5556666666666666555
Q ss_pred cchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCC
Q 042817 601 LPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 601 lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 645 (922)
+| .+..+++|++|++++|. +..+|. +..+++|+.|++++|.
T Consensus 102 l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~ 142 (605)
T 1m9s_A 102 LS-SLKDLKKLKSLSLEHNG-ISDING--LVHLPQLESLYLGNNK 142 (605)
T ss_dssp CT-TSTTCTTCCEEECTTSC-CCCCGG--GGGCTTCSEEECCSSC
T ss_pred Ch-hhccCCCCCEEEecCCC-CCCCcc--ccCCCccCEEECCCCc
Confidence 54 45556666666666654 344432 5555666666665554
No 99
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.52 E-value=3.6e-15 Score=176.63 Aligned_cols=324 Identities=17% Similarity=0.128 Sum_probs=171.4
Q ss_pred cccceEEeeecccccccc--cc-cCCCCceEEEeccC-ccccc-chhhhccCCCceEEEccCCCCCcc-----cCccccC
Q 042817 515 WKGVKRMSLMNNKIRNLS--EP-ATCPHLLTLFLQNN-RLSNI-TANFFQFMPSLKVLNLSNNFSLRE-----FPPGISK 584 (922)
Q Consensus 515 ~~~l~~l~l~~~~~~~~~--~~-~~~~~L~~L~l~~~-~l~~~-~~~~~~~l~~L~~L~L~~~~~l~~-----lp~~i~~ 584 (922)
++++++|+++++.+.... .. ..+++|++|++.+| .+... .+..+.++++|++|+|++| .++. ++.....
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES-DVDDVSGHWLSHFPDT 182 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTC-EEECCCGGGGGGSCTT
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCC-ccCCcchHHHHHHhhc
Confidence 456677777766554321 11 24667777777766 33321 2233446677777777776 3322 2333335
Q ss_pred cccCCeeeeccCC--cc--ccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCc
Q 042817 585 LISLQYLNLSSTG--IR--VLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGG 660 (922)
Q Consensus 585 L~~L~~L~L~~~~--i~--~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 660 (922)
+++|++|++++|. +. .++..+.++++|++|++++|..+..+|.. +.++++|++|++..+...- .....
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~-------~~~~~ 254 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGYTAEV-------RPDVY 254 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBCCCCC-------CHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccccCcc-------chhhH
Confidence 5677777777665 21 23333445677777777777545555543 5667777777766553100 00001
Q ss_pred cchHHHhhcCCCCceEE-EEEechhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCccee
Q 042817 661 EILIEELLCLNHLSVLS-VCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQ 739 (922)
Q Consensus 661 ~~~~~~L~~L~~L~~L~-l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~ 739 (922)
......+.++++|+.|. +.......+. .....+++|+.|++++|......+. ..+..+++|++|.+++| .....
T Consensus 255 ~~l~~~l~~~~~L~~Ls~~~~~~~~~l~---~~~~~~~~L~~L~L~~~~l~~~~l~-~~~~~~~~L~~L~l~~~-~~~~~ 329 (594)
T 2p1m_B 255 SGLSVALSGCKELRCLSGFWDAVPAYLP---AVYSVCSRLTTLNLSYATVQSYDLV-KLLCQCPKLQRLWVLDY-IEDAG 329 (594)
T ss_dssp HHHHHHHHTCTTCCEEECCBTCCGGGGG---GGHHHHTTCCEEECTTCCCCHHHHH-HHHTTCTTCCEEEEEGG-GHHHH
T ss_pred HHHHHHHhcCCCcccccCCcccchhhHH---HHHHhhCCCCEEEccCCCCCHHHHH-HHHhcCCCcCEEeCcCc-cCHHH
Confidence 11334566777777662 2211211221 1222356788888887752111111 11456788888888877 22111
Q ss_pred ecccccccCCCCCccCCcccEEEEecC--------CCCCCC--chh-hccCCCcEEEEeccccchhhhcccccccccccC
Q 042817 740 IDCVGEIRKTPETSRFHNLHRVGIVNC--------KSLKDI--TWL-IFAPNLRILEISYCFEMTEIISQAKVDEFGATA 808 (922)
Q Consensus 740 ~~~~~~~~~~~~~~~l~~L~~L~L~~c--------~~l~~l--~~l-~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~ 808 (922)
+..+. ..+++|+.|+|.+| ..++.. ..+ ..+++|+.|.+ +|+.++.....
T Consensus 330 l~~l~--------~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~---------- 390 (594)
T 2p1m_B 330 LEVLA--------STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALI---------- 390 (594)
T ss_dssp HHHHH--------HHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHH----------
T ss_pred HHHHH--------HhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHH----------
Confidence 11111 12678888888553 233321 112 24788888855 45555543220
Q ss_pred CCCCCccCCccceeecC-----ccccccccccC------CcCCCCccEEEecCCCCCCCC--CCCC-CcccccceEEEcc
Q 042817 809 GNHHQIPFAKLESLKLA-----RLPNLESVYWT------PLSFSHLKEIRIFKCPRLWKL--PLDS-NSAKERKIVIKGE 874 (922)
Q Consensus 809 ~~~~~~~fp~L~~L~L~-----~~~~L~~l~~~------~~~~p~L~~L~i~~C~~L~~l--p~~~-~~~~l~~l~I~g~ 874 (922)
.....+|+|+.|++. +|..+...+.. ...+++|+.|++.+ .++.- +... ..+.++.+.+.+|
T Consensus 391 --~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~ 466 (594)
T 2p1m_B 391 --TIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFA 466 (594)
T ss_dssp --HHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred --HHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCC
Confidence 012247889999988 56666644321 23478888888865 44431 1111 1345788888876
Q ss_pred c
Q 042817 875 I 875 (922)
Q Consensus 875 ~ 875 (922)
.
T Consensus 467 ~ 467 (594)
T 2p1m_B 467 G 467 (594)
T ss_dssp C
T ss_pred C
Confidence 5
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.52 E-value=1.2e-13 Score=143.58 Aligned_cols=126 Identities=21% Similarity=0.296 Sum_probs=97.2
Q ss_pred cceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccC-ccccCcccCCeeeecc
Q 042817 517 GVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFP-PGISKLISLQYLNLSS 595 (922)
Q Consensus 517 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~L~~ 595 (922)
..+.++++++.+..+|... .++++.|++++|.+..+++..|.++++|++|+|++| .+..++ ..+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCC
Confidence 4567778888887776543 267888888888888888777888888888888888 666554 4478888888888888
Q ss_pred CCccccch-hhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCC
Q 042817 596 TGIRVLPE-ELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 596 ~~i~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 645 (922)
|.++.+|. .+..+++|++|++++|. +..+|...+.++++|++|++++|.
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~ 142 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQ 142 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCc
Confidence 88887764 46788888888888886 567777666788888888888775
No 101
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.51 E-value=6.1e-15 Score=158.84 Aligned_cols=83 Identities=19% Similarity=0.177 Sum_probs=40.3
Q ss_pred CCceEEEccCCCCCcccCccc--cCcccCCeeeeccCCcccc-c----hhhccCCCCCEEeCCCCccccccChhhhCCCC
Q 042817 562 PSLKVLNLSNNFSLREFPPGI--SKLISLQYLNLSSTGIRVL-P----EELKALKDLSYLNMERTSFVRRIPRQLISNFP 634 (922)
Q Consensus 562 ~~L~~L~L~~~~~l~~lp~~i--~~L~~L~~L~L~~~~i~~l-p----~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~ 634 (922)
++|++|++++|......|..+ +.+++|++|++++|.++.. | ..+..+++|++|++++|.. ..+|...+++++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~~~~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS-PAFSCEQVRAFP 169 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS-CCCCTTSCCCCT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCc-chhhHHHhccCC
Confidence 445555555552222344444 5555555555555555421 1 2233455555555555542 334333355555
Q ss_pred CCCEEEeecCC
Q 042817 635 LLRVLRMLDCG 645 (922)
Q Consensus 635 ~L~~L~l~~~~ 645 (922)
+|++|++++|.
T Consensus 170 ~L~~L~Ls~N~ 180 (310)
T 4glp_A 170 ALTSLDLSDNP 180 (310)
T ss_dssp TCCEEECCSCT
T ss_pred CCCEEECCCCC
Confidence 55555555554
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.51 E-value=5.4e-14 Score=149.61 Aligned_cols=149 Identities=22% Similarity=0.341 Sum_probs=115.3
Q ss_pred CccccccceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCe
Q 042817 511 GIEKWKGVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQY 590 (922)
Q Consensus 511 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 590 (922)
....+++++.|++.+|.+..++....+++|++|++++|.+..+++ +..+++|++|++++| .+..+|. ++.+++|++
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~ 116 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKS 116 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCE
T ss_pred chhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC-cCCCChh-hccCCCCCE
Confidence 345567888888888888888777888889999998888888776 788888999999888 7777664 888888999
Q ss_pred eeeccCCccccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcC
Q 042817 591 LNLSSTGIRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCL 670 (922)
Q Consensus 591 L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 670 (922)
|++++|.++.++ .+..+++|++|++++|. +..++. +.++++|++|++++|.... .. .+..+
T Consensus 117 L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~N~l~~-------------~~--~l~~l 177 (291)
T 1h6t_A 117 LSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQISD-------------IV--PLAGL 177 (291)
T ss_dssp EECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCCC-------------CG--GGTTC
T ss_pred EECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcchh--hccCCCCCEEEccCCcccc-------------ch--hhcCC
Confidence 999988888874 67888889999998886 456643 7888889999888886321 11 16667
Q ss_pred CCCceEEEEEec
Q 042817 671 NHLSVLSVCLES 682 (922)
Q Consensus 671 ~~L~~L~l~~~~ 682 (922)
++|+.|+++.+.
T Consensus 178 ~~L~~L~L~~N~ 189 (291)
T 1h6t_A 178 TKLQNLYLSKNH 189 (291)
T ss_dssp TTCCEEECCSSC
T ss_pred CccCEEECCCCc
Confidence 777777765443
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.50 E-value=8.7e-14 Score=138.79 Aligned_cols=150 Identities=15% Similarity=0.236 Sum_probs=127.3
Q ss_pred cccccceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCc-ccCccccCcccCCee
Q 042817 513 EKWKGVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLR-EFPPGISKLISLQYL 591 (922)
Q Consensus 513 ~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L 591 (922)
..+++++.|++++|.+..++....+++|++|++++|.+..++ .+..+++|++|++++| .+. ..|..++.+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECC-ccCcccChhhcCCCCCCEE
Confidence 566789999999999999888889999999999999776654 3889999999999999 555 478889999999999
Q ss_pred eeccCCccc-cchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcC
Q 042817 592 NLSSTGIRV-LPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCL 670 (922)
Q Consensus 592 ~L~~~~i~~-lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 670 (922)
++++|.++. .|..++.+++|++|++++|..+..+|. +.++++|++|++++|.... +..+..+
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~---------------~~~l~~l 180 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD---------------YRGIEDF 180 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC---------------CTTGGGC
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC---------------hHHhccC
Confidence 999999985 778899999999999999976788874 8999999999999987321 1257788
Q ss_pred CCCceEEEEEec
Q 042817 671 NHLSVLSVCLES 682 (922)
Q Consensus 671 ~~L~~L~l~~~~ 682 (922)
++|+.|+++.+.
T Consensus 181 ~~L~~L~l~~N~ 192 (197)
T 4ezg_A 181 PKLNQLYAFSQT 192 (197)
T ss_dssp SSCCEEEECBC-
T ss_pred CCCCEEEeeCcc
Confidence 889988887554
No 104
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.50 E-value=4.7e-14 Score=155.42 Aligned_cols=258 Identities=17% Similarity=0.126 Sum_probs=135.6
Q ss_pred eeeccccccc-ccc-cCCCCceEEEeccCcccccch----hhhccCC-CceEEEccCCCCCccc-CccccCc-----ccC
Q 042817 522 SLMNNKIRNL-SEP-ATCPHLLTLFLQNNRLSNITA----NFFQFMP-SLKVLNLSNNFSLREF-PPGISKL-----ISL 588 (922)
Q Consensus 522 ~l~~~~~~~~-~~~-~~~~~L~~L~l~~~~l~~~~~----~~~~~l~-~L~~L~L~~~~~l~~l-p~~i~~L-----~~L 588 (922)
.++.|.+... +.. ...++|+.|++++|.+...+. ..+..++ +|++|+|++| .++.. +..+..+ ++|
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCc
Confidence 4455555542 222 334447777777777777665 5566777 7777777777 55443 4445544 777
Q ss_pred CeeeeccCCccccch-h----hccC-CCCCEEeCCCCccccccChhh----hCC-CCCCCEEEeecCCcccccccCcccc
Q 042817 589 QYLNLSSTGIRVLPE-E----LKAL-KDLSYLNMERTSFVRRIPRQL----ISN-FPLLRVLRMLDCGALERAEHGSVLF 657 (922)
Q Consensus 589 ~~L~L~~~~i~~lp~-~----l~~l-~~L~~L~l~~~~~l~~lp~~~----i~~-l~~L~~L~l~~~~~~~~~~~~~~~~ 657 (922)
++|++++|.++..+. . +..+ ++|++|++++|. +...+... +.. .++|++|++++|....
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~--------- 152 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGI--------- 152 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG---------
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCH---------
Confidence 777777777764432 2 4444 677777777776 34444322 233 2577777777765221
Q ss_pred cCccchHHHhhcCCCCceEEEEEechhHHHHHhhcccccCcceEEEEcCccccccccccc--ccccc-cccceeeecccC
Q 042817 658 NGGEILIEELLCLNHLSVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTL--SLTDM-EKLRNLFIADSS 734 (922)
Q Consensus 658 ~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l--~l~~~-~~L~~L~i~~~~ 734 (922)
.........+..++ .+|+.|+++++.........+ .+..+ ++|+.|++++|.
T Consensus 153 ~~~~~l~~~l~~~~-------------------------~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 207 (362)
T 3goz_A 153 KSSDELIQILAAIP-------------------------ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL 207 (362)
T ss_dssp SCHHHHHHHHHTSC-------------------------TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHHHHHHhcCC-------------------------ccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC
Confidence 01111222333333 245555555543211111111 13334 478888888777
Q ss_pred CcceeecccccccCCCCCcc-CCcccEEEEecCCCCCCCch------hhccCCCcEEEEeccccchhhhccccccccccc
Q 042817 735 FEKLQIDCVGEIRKTPETSR-FHNLHRVGIVNCKSLKDITW------LIFAPNLRILEISYCFEMTEIISQAKVDEFGAT 807 (922)
Q Consensus 735 ~~~l~~~~~~~~~~~~~~~~-l~~L~~L~L~~c~~l~~l~~------l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~ 807 (922)
+.......+.. .... .++|+.|+|++| .+...+. +..+++|+.|+|++|. +..+..... . ..
T Consensus 208 i~~~~~~~l~~-----~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~-~---~l 276 (362)
T 3goz_A 208 LGLKSYAELAY-----IFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQC-K---AL 276 (362)
T ss_dssp GGGSCHHHHHH-----HHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHHH-H---HH
T ss_pred CChhHHHHHHH-----HHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHHHH-H---HH
Confidence 65421111110 0001 347888888887 4555432 3567888888888864 221111000 0 00
Q ss_pred CCCCCCccCCccceeecCccc
Q 042817 808 AGNHHQIPFAKLESLKLARLP 828 (922)
Q Consensus 808 ~~~~~~~~fp~L~~L~L~~~~ 828 (922)
. .....+++|+.|++++++
T Consensus 277 ~--~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 277 G--AAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp H--TTSTTCCEEEEECTTSCB
T ss_pred H--HHhccCCceEEEecCCCc
Confidence 0 134466778888887754
No 105
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.47 E-value=2.5e-13 Score=141.27 Aligned_cols=165 Identities=21% Similarity=0.299 Sum_probs=135.1
Q ss_pred cCCccccCCCccccccceEEeeeccccccccc--ccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccC
Q 042817 502 AGVGLTEAPGIEKWKGVKRMSLMNNKIRNLSE--PATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFP 579 (922)
Q Consensus 502 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp 579 (922)
.+..+..+|.. -.++++.|++++|.+..++. ...+++|++|++++|.+..+++..|..+++|++|+|++| .++.+|
T Consensus 22 ~~~~l~~~p~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~ 99 (251)
T 3m19_A 22 QGKSLDSVPSG-IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLP 99 (251)
T ss_dssp TTCCCSSCCSC-CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCC
T ss_pred CCCCccccCCC-CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cccccC
Confidence 34445555532 23689999999999988765 477899999999999999999988999999999999999 777776
Q ss_pred -ccccCcccCCeeeeccCCccccchh-hccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccc
Q 042817 580 -PGISKLISLQYLNLSSTGIRVLPEE-LKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLF 657 (922)
Q Consensus 580 -~~i~~L~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 657 (922)
..++.+++|++|++++|.++.+|.. +..+++|++|++++|. +..+|...++++++|++|++++|...
T Consensus 100 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~---------- 168 (251)
T 3m19_A 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQ---------- 168 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS----------
T ss_pred hhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCC----------
Confidence 4578999999999999999999876 6889999999999997 67888766899999999999998732
Q ss_pred cCccchHHHhhcCCCCceEEEEEec
Q 042817 658 NGGEILIEELLCLNHLSVLSVCLES 682 (922)
Q Consensus 658 ~~~~~~~~~L~~L~~L~~L~l~~~~ 682 (922)
......+..+++|+.|+++.+.
T Consensus 169 ---~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 169 ---SVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp ---CCCTTTTTTCTTCCEEECCSCC
T ss_pred ---ccCHHHHhCCCCCCEEEeeCCc
Confidence 1223346677888888876544
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.47 E-value=1.2e-13 Score=161.27 Aligned_cols=171 Identities=22% Similarity=0.304 Sum_probs=125.7
Q ss_pred CccccccceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCe
Q 042817 511 GIEKWKGVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQY 590 (922)
Q Consensus 511 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 590 (922)
....+.+++.|++.+|.+..++....+++|+.|+|++|.+..+++ +..+++|++|+|++| .+..+| .++.+++|++
T Consensus 38 ~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKS 113 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCE
T ss_pred chhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC-CCCCCh-hhccCCCCCE
Confidence 345566788888888888888777888888888888888887776 778888888888888 777766 5888888888
Q ss_pred eeeccCCccccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcC
Q 042817 591 LNLSSTGIRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCL 670 (922)
Q Consensus 591 L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 670 (922)
|+|++|.+..+| .+..+++|+.|+|++|. +..++. +..+++|++|++++|.... ... +..+
T Consensus 114 L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~~-------------~~~--l~~l 174 (605)
T 1m9s_A 114 LSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQISD-------------IVP--LAGL 174 (605)
T ss_dssp EECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GGSCTTCSEEECCSSCCCC-------------CGG--GTTC
T ss_pred EEecCCCCCCCc-cccCCCccCEEECCCCc-cCCchh--hcccCCCCEEECcCCcCCC-------------chh--hccC
Confidence 888888888875 57888888888888886 455643 7888888888888876321 111 6777
Q ss_pred CCCceEEEEEechhHHHHHhhcccccCcceEEEEcCcc
Q 042817 671 NHLSVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLK 708 (922)
Q Consensus 671 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 708 (922)
++|+.|+++.+....++ .+..+.+|+.|.|+++.
T Consensus 175 ~~L~~L~Ls~N~i~~l~----~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 175 TKLQNLYLSKNHISDLR----ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp TTCCEEECCSSCCCBCG----GGTTCTTCSEEECCSEE
T ss_pred CCCCEEECcCCCCCCCh----HHccCCCCCEEEccCCc
Confidence 78888877765544332 22334566666666654
No 107
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.46 E-value=1.4e-13 Score=121.64 Aligned_cols=82 Identities=7% Similarity=0.104 Sum_probs=72.7
Q ss_pred cchhhHHHHHHHhhhhhhchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHH
Q 042817 11 FSCDAIFSHCLNCTERQVAFISELEDNLDALQAEMQKLIEVRDDVMTRVIIAEQQQ-MKRLNQVQGWLKRVEAVEAEVRE 89 (922)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~a~~~~-~~~~~~~~~Wl~~v~~~~~~~~d 89 (922)
|+++++++++.+++.+|+.++.+++++++.|+++|++|+++|.|+ +.++ ...+++++.|+++||+++||+||
T Consensus 1 a~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da-------~~~~~~~~d~~vk~W~~~vrdlaYD~ED 73 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKI-------GEVPREQLDSQDKLWADEVRELSYVIED 73 (115)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TTSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH-------HHhccccCCHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999994 4431 12467899999999999999999
Q ss_pred HHHHHHHhhh
Q 042817 90 LQRIQTQVIN 99 (922)
Q Consensus 90 ~~d~~~~~~~ 99 (922)
++|+|.++..
T Consensus 74 ~iD~f~~~~~ 83 (115)
T 3qfl_A 74 VVDKFLVQVD 83 (115)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999988765
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.45 E-value=5e-13 Score=136.67 Aligned_cols=138 Identities=21% Similarity=0.366 Sum_probs=102.8
Q ss_pred ccccCCCccccccceEEeeeccccccccc--ccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCcc-
Q 042817 505 GLTEAPGIEKWKGVKRMSLMNNKIRNLSE--PATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPG- 581 (922)
Q Consensus 505 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~- 581 (922)
++..+|. .-.++++.|++++|.+..+++ ...+++|++|++++|.+..+++..|..+++|++|+|++| .++.+|..
T Consensus 30 ~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~ 107 (229)
T 3e6j_A 30 RHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAV 107 (229)
T ss_dssp CCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred CcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccChhH
Confidence 3444443 223678888888888777644 356778888888888887777777788888888888888 67666654
Q ss_pred ccCcccCCeeeeccCCccccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCC
Q 042817 582 ISKLISLQYLNLSSTGIRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 582 i~~L~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 645 (922)
++.+++|++|++++|+++.+|..+..+++|++|++++|. +..+|...+..+++|++|++.+|.
T Consensus 108 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 108 FDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred hCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCC
Confidence 577888888888888888888888888888888888876 567776667778888888887776
No 109
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.44 E-value=1.6e-13 Score=151.25 Aligned_cols=232 Identities=14% Similarity=0.162 Sum_probs=146.7
Q ss_pred ccceEEeeeccccccccc------ccCCC-CceEEEeccCcccccchhhhccC-----CCceEEEccCCCCCcccC-cc-
Q 042817 516 KGVKRMSLMNNKIRNLSE------PATCP-HLLTLFLQNNRLSNITANFFQFM-----PSLKVLNLSNNFSLREFP-PG- 581 (922)
Q Consensus 516 ~~l~~l~l~~~~~~~~~~------~~~~~-~L~~L~l~~~~l~~~~~~~~~~l-----~~L~~L~L~~~~~l~~lp-~~- 581 (922)
+++++|++++|.+...+. ...++ +|++|++++|.+.......+..+ ++|++|+|++| .++..+ ..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l 100 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN-FLSYKSSDEL 100 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC-cCChHHHHHH
Confidence 459999999999987653 25677 89999999999988876666665 99999999999 666544 33
Q ss_pred ---ccCc-ccCCeeeeccCCccccch-h----hcc-CCCCCEEeCCCCcccc----ccChhhhCCCC-CCCEEEeecCCc
Q 042817 582 ---ISKL-ISLQYLNLSSTGIRVLPE-E----LKA-LKDLSYLNMERTSFVR----RIPRQLISNFP-LLRVLRMLDCGA 646 (922)
Q Consensus 582 ---i~~L-~~L~~L~L~~~~i~~lp~-~----l~~-l~~L~~L~l~~~~~l~----~lp~~~i~~l~-~L~~L~l~~~~~ 646 (922)
+..+ ++|++|++++|.++..+. . +.. .++|++|++++|.... .++.. +..++ +|++|++++|..
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~-l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI-LAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH-HHTSCTTCCEEECTTSCG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH-HhcCCccccEeeecCCCC
Confidence 4444 899999999999986653 2 344 3699999999997432 33333 45565 999999999973
Q ss_pred ccccccCcccccCccchHHHhhcC-CCCceEEEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccc--ccc-c
Q 042817 647 LERAEHGSVLFNGGEILIEELLCL-NHLSVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLS--LTD-M 722 (922)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~L~~L-~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--l~~-~ 722 (922)
.. .........+..+ ++|+.|+++.+.... .....+. +.. .
T Consensus 180 ~~---------~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~--------------------------~~~~~l~~~l~~~~ 224 (362)
T 3goz_A 180 AS---------KNCAELAKFLASIPASVTSLDLSANLLGL--------------------------KSYAELAYIFSSIP 224 (362)
T ss_dssp GG---------SCHHHHHHHHHTSCTTCCEEECTTSCGGG--------------------------SCHHHHHHHHHHSC
T ss_pred ch---------hhHHHHHHHHHhCCCCCCEEECCCCCCCh--------------------------hHHHHHHHHHhcCC
Confidence 21 0111122334444 366666665443322 1111111 222 3
Q ss_pred cccceeeecccCCcceeecccccccCCCCCccCCcccEEEEecCCCCCCCc---------hhhccCCCcEEEEeccc
Q 042817 723 EKLRNLFIADSSFEKLQIDCVGEIRKTPETSRFHNLHRVGIVNCKSLKDIT---------WLIFAPNLRILEISYCF 790 (922)
Q Consensus 723 ~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~---------~l~~l~~L~~L~L~~c~ 790 (922)
++|+.|++++|.+.......+.. ....+++|+.|+|++|. +..++ .+..+++|+.|+++++.
T Consensus 225 ~~L~~L~Ls~N~l~~~~~~~l~~-----~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 225 NHVVSLNLCLNCLHGPSLENLKL-----LKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTCCEEECCSSCCCCCCHHHHHH-----TTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CCceEEECcCCCCCcHHHHHHHH-----HHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 46777777777655432211110 01235677888887773 22221 23456677777777653
No 110
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.43 E-value=2.3e-13 Score=146.46 Aligned_cols=128 Identities=16% Similarity=0.182 Sum_probs=95.8
Q ss_pred cceEEeeecccccc-----cccccCCCCceEEEeccCcccccchhhh--ccCCCceEEEccCCCCCcc-cC----ccccC
Q 042817 517 GVKRMSLMNNKIRN-----LSEPATCPHLLTLFLQNNRLSNITANFF--QFMPSLKVLNLSNNFSLRE-FP----PGISK 584 (922)
Q Consensus 517 ~l~~l~l~~~~~~~-----~~~~~~~~~L~~L~l~~~~l~~~~~~~~--~~l~~L~~L~L~~~~~l~~-lp----~~i~~ 584 (922)
.++.+.+.+..+.. +.....+++|+.|++++|.+....+..+ ..+++|++|+|++| .+.. .| ..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHHhhh
Confidence 46777777665532 2223445779999999998887666556 88999999999999 5553 33 33457
Q ss_pred cccCCeeeeccCCccccc-hhhccCCCCCEEeCCCCccccc--cCh-hhhCCCCCCCEEEeecCC
Q 042817 585 LISLQYLNLSSTGIRVLP-EELKALKDLSYLNMERTSFVRR--IPR-QLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 585 L~~L~~L~L~~~~i~~lp-~~l~~l~~L~~L~l~~~~~l~~--lp~-~~i~~l~~L~~L~l~~~~ 645 (922)
+++|++|++++|.+..+| ..++.+++|++|++++|..... ++. ..++++++|++|++++|.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 208 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG 208 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC
Confidence 899999999999998776 5788999999999999975432 322 224688999999999886
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.43 E-value=6.1e-13 Score=139.07 Aligned_cols=152 Identities=20% Similarity=0.255 Sum_probs=122.5
Q ss_pred cCCCccccccceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCccc
Q 042817 508 EAPGIEKWKGVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLIS 587 (922)
Q Consensus 508 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~ 587 (922)
.++.+..+++++.|++++|.+..++....+++|+.|++++|.+..+++ +..+++|++|+|++| .++.+|.... .+
T Consensus 33 ~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N-~l~~l~~~~~--~~ 107 (263)
T 1xeu_A 33 DLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN-RLKNLNGIPS--AC 107 (263)
T ss_dssp SEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS-CCSCCTTCCC--SS
T ss_pred cccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC-ccCCcCcccc--Cc
Confidence 334556677899999999998888877888999999999998888877 888999999999999 7888876443 88
Q ss_pred CCeeeeccCCccccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHh
Q 042817 588 LQYLNLSSTGIRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEEL 667 (922)
Q Consensus 588 L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L 667 (922)
|++|++++|.++.+| .++.+++|++|++++|. +..+|. +..+++|++|++++|.... ...+
T Consensus 108 L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~~---------------~~~l 168 (263)
T 1xeu_A 108 LSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEITN---------------TGGL 168 (263)
T ss_dssp CCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCCB---------------CTTS
T ss_pred ccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCcc---------------hHHh
Confidence 999999999998886 58889999999999987 567763 7889999999999887321 1456
Q ss_pred hcCCCCceEEEEEech
Q 042817 668 LCLNHLSVLSVCLESD 683 (922)
Q Consensus 668 ~~L~~L~~L~l~~~~~ 683 (922)
..+++|+.|+++.+..
T Consensus 169 ~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 169 TRLKKVNWIDLTGQKC 184 (263)
T ss_dssp TTCCCCCEEEEEEEEE
T ss_pred ccCCCCCEEeCCCCcc
Confidence 7778888888876543
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.43 E-value=3.9e-13 Score=136.47 Aligned_cols=123 Identities=20% Similarity=0.297 Sum_probs=67.6
Q ss_pred EEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCccc-CccccCcccCCeeeeccCCc
Q 042817 520 RMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREF-PPGISKLISLQYLNLSSTGI 598 (922)
Q Consensus 520 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~i 598 (922)
.++..++.+..+|... .++|+.|++++|.+..+++..|..+++|++|+|++| .+..+ |..+.++++|++|+|++|.+
T Consensus 15 ~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 3444555555544321 245566666666555555555555666666666665 44443 45555666666666666666
Q ss_pred cccchh-hccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCC
Q 042817 599 RVLPEE-LKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 599 ~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 645 (922)
+.+|.. +..+++|++|++++|. +..++...+.++++|++|++++|.
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 139 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNK 139 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCc
Confidence 655544 3555666666666654 344443345556666666666554
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.42 E-value=7.7e-13 Score=131.87 Aligned_cols=138 Identities=22% Similarity=0.300 Sum_probs=120.8
Q ss_pred CCccccCCCccccccceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCc-ccCcc
Q 042817 503 GVGLTEAPGIEKWKGVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLR-EFPPG 581 (922)
Q Consensus 503 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~-~lp~~ 581 (922)
+.....++.+..+++++.|++++|.+..++....+++|++|++++|.+....+..+..+++|++|++++| .+. ..|..
T Consensus 53 ~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~i~~~~~~~ 131 (197)
T 4ezg_A 53 NINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS-AHDDSILTK 131 (197)
T ss_dssp SSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS-BCBGGGHHH
T ss_pred CCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC-ccCcHhHHH
Confidence 3455566778889999999999999988888889999999999999998755556899999999999999 555 57888
Q ss_pred ccCcccCCeeeeccCC-ccccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCC
Q 042817 582 ISKLISLQYLNLSSTG-IRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 582 i~~L~~L~~L~L~~~~-i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 645 (922)
++.+++|++|++++|. ++.+| .+..+++|++|++++|. +..++. +..+++|++|++++|.
T Consensus 132 l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~--l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 132 INTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRG--IEDFPKLNQLYAFSQT 192 (197)
T ss_dssp HTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTT--GGGCSSCCEEEECBC-
T ss_pred HhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChHH--hccCCCCCEEEeeCcc
Confidence 9999999999999998 99998 79999999999999997 567773 8899999999999986
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.41 E-value=1.3e-12 Score=132.57 Aligned_cols=141 Identities=26% Similarity=0.377 Sum_probs=122.0
Q ss_pred cCCccccCCCccccccceEEeeeccccccccc--ccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccC
Q 042817 502 AGVGLTEAPGIEKWKGVKRMSLMNNKIRNLSE--PATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFP 579 (922)
Q Consensus 502 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp 579 (922)
.+.++..+|.. -.++++.|++++|.+..++. ...+++|+.|++++|.+..+.+..|.++++|++|+|++| .++.+|
T Consensus 19 ~~~~l~~iP~~-l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~ 96 (220)
T 2v9t_B 19 RGKGLTEIPTN-LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELP 96 (220)
T ss_dssp TTSCCSSCCSS-CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCC
T ss_pred CCCCcCcCCCc-cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccC
Confidence 34455555542 23689999999999998875 477899999999999999998888999999999999999 888888
Q ss_pred cc-ccCcccCCeeeeccCCcccc-chhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCC
Q 042817 580 PG-ISKLISLQYLNLSSTGIRVL-PEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 580 ~~-i~~L~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 645 (922)
.. +..+++|++|+|++|.++.+ |..+..+++|++|++++|. +..+|...+..+++|++|++.+|.
T Consensus 97 ~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 97 KSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred HhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCC
Confidence 76 58899999999999999987 4679999999999999997 677887778999999999999987
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.39 E-value=1.9e-12 Score=131.43 Aligned_cols=126 Identities=20% Similarity=0.281 Sum_probs=57.2
Q ss_pred ceEEeeeccccccccc---ccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCc-cccCcccCCeeee
Q 042817 518 VKRMSLMNNKIRNLSE---PATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPP-GISKLISLQYLNL 593 (922)
Q Consensus 518 l~~l~l~~~~~~~~~~---~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L 593 (922)
++.|++++|.+..+++ ...+++|+.|++++|.++.+++..|.++++|++|+|++| .+..+|. .++.+++|++|+|
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEEC
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEEEC
Confidence 3444455444444422 234444555555555444444444444555555555544 3333332 2444445555555
Q ss_pred ccCCcccc-chhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCC
Q 042817 594 SSTGIRVL-PEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 594 ~~~~i~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 645 (922)
++|.++.+ |..+..+++|++|++++|. +..+++..+..+++|++|++.+|.
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcC
Confidence 55544443 3334444455555555443 233322224444455555444443
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.39 E-value=3.1e-12 Score=147.51 Aligned_cols=112 Identities=22% Similarity=0.374 Sum_probs=69.5
Q ss_pred cceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeeeccC
Q 042817 517 GVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSST 596 (922)
Q Consensus 517 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~ 596 (922)
+++.|++++|.+..+|... +++|++|++++|.++.+| ..+++|++|+|++| .++.+|. +++ +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCC
Confidence 5666677766666655432 356667777766666555 23566666777666 5666666 544 6666666666
Q ss_pred CccccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCC
Q 042817 597 GIRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 597 ~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 645 (922)
.++.+|. .+++|++|++++|. +..+|. .+++|++|++++|.
T Consensus 131 ~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N~ 171 (571)
T 3cvr_A 131 QLTMLPE---LPALLEYINADNNQ-LTMLPE----LPTSLEVLSVRNNQ 171 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSC
T ss_pred cCCCCCC---cCccccEEeCCCCc-cCcCCC----cCCCcCEEECCCCC
Confidence 6666665 46666666666665 344554 35566666666654
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.39 E-value=1.1e-12 Score=133.07 Aligned_cols=148 Identities=18% Similarity=0.289 Sum_probs=122.1
Q ss_pred eEEeeecccccccccccCCCCceEEEeccCcccccc-hhhhccCCCceEEEccCCCCCcccCc-cccCcccCCeeeeccC
Q 042817 519 KRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNIT-ANFFQFMPSLKVLNLSNNFSLREFPP-GISKLISLQYLNLSST 596 (922)
Q Consensus 519 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~ 596 (922)
+.++++++.+..+|.. -.+.++.|++++|.+..++ ...|..+++|++|+|++| .++.+|. .++++++|++|+|++|
T Consensus 14 ~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC
Confidence 5789999999888753 3456899999999999884 466899999999999999 7877765 7999999999999999
Q ss_pred Cccccchh-hccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCce
Q 042817 597 GIRVLPEE-LKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSV 675 (922)
Q Consensus 597 ~i~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~ 675 (922)
.++.+|.. +..+++|++|++++|. +..+++..+.++++|++|++++|... ......+..+++|+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~-------------~~~~~~~~~l~~L~~ 157 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQIT-------------TVAPGAFDTLHSLST 157 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCC-------------CBCTTTTTTCTTCCE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCC-------------EECHHHhcCCCCCCE
Confidence 99988764 8999999999999998 56665555899999999999998732 123455677888888
Q ss_pred EEEEEec
Q 042817 676 LSVCLES 682 (922)
Q Consensus 676 L~l~~~~ 682 (922)
|+++.+.
T Consensus 158 L~L~~N~ 164 (220)
T 2v70_A 158 LNLLANP 164 (220)
T ss_dssp EECCSCC
T ss_pred EEecCcC
Confidence 8887543
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.39 E-value=2e-13 Score=142.84 Aligned_cols=144 Identities=19% Similarity=0.263 Sum_probs=117.6
Q ss_pred ccccceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeee
Q 042817 514 KWKGVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNL 593 (922)
Q Consensus 514 ~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L 593 (922)
.+.++..+++..+.+.+++....+++|+.|++++|.+..++ .+..+++|++|+|++| .+..+|. ++.+++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence 45667777888888888887788999999999999998877 3888999999999999 8888887 999999999999
Q ss_pred ccCCccccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCC
Q 042817 594 SSTGIRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHL 673 (922)
Q Consensus 594 ~~~~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L 673 (922)
++|.++.+|.... ++|++|++++|. +..+|. +.++++|++|++++|.... +..+..+++|
T Consensus 93 ~~N~l~~l~~~~~--~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~~---------------~~~l~~l~~L 152 (263)
T 1xeu_A 93 NRNRLKNLNGIPS--ACLSRLFLDNNE-LRDTDS--LIHLKNLEILSIRNNKLKS---------------IVMLGFLSKL 152 (263)
T ss_dssp CSSCCSCCTTCCC--SSCCEEECCSSC-CSBSGG--GTTCTTCCEEECTTSCCCB---------------CGGGGGCTTC
T ss_pred CCCccCCcCcccc--CcccEEEccCCc-cCCChh--hcCcccccEEECCCCcCCC---------------ChHHccCCCC
Confidence 9999999886444 899999999997 566764 8899999999999987321 1246667777
Q ss_pred ceEEEEEe
Q 042817 674 SVLSVCLE 681 (922)
Q Consensus 674 ~~L~l~~~ 681 (922)
+.|+++.+
T Consensus 153 ~~L~L~~N 160 (263)
T 1xeu_A 153 EVLDLHGN 160 (263)
T ss_dssp CEEECTTS
T ss_pred CEEECCCC
Confidence 77766543
No 119
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.38 E-value=2.8e-12 Score=129.11 Aligned_cols=129 Identities=25% Similarity=0.433 Sum_probs=94.1
Q ss_pred cccceEEeeeccccccccc--ccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCcc-ccCcccCCee
Q 042817 515 WKGVKRMSLMNNKIRNLSE--PATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPG-ISKLISLQYL 591 (922)
Q Consensus 515 ~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L 591 (922)
.+++++|++++|.+..++. ...+++|++|++++|.+..+++..|..+++|++|+|++| .++.+|.. ++.+++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEE
Confidence 3567778888777776655 256777888888887777777776777778888888877 66666644 5777788888
Q ss_pred eeccCCccccchh-hccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCC
Q 042817 592 NLSSTGIRVLPEE-LKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 592 ~L~~~~i~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 645 (922)
++++|.++.+|.. +..+++|++|++++|. +..+|...+.++++|++|++.+|.
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCC
Confidence 8888777777654 5777788888887776 456666656777778888777765
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.37 E-value=1e-12 Score=127.37 Aligned_cols=127 Identities=28% Similarity=0.285 Sum_probs=104.5
Q ss_pred ccceEEeeeccccc--ccccc-cCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcc-cCccccCcccCCee
Q 042817 516 KGVKRMSLMNNKIR--NLSEP-ATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLRE-FPPGISKLISLQYL 591 (922)
Q Consensus 516 ~~l~~l~l~~~~~~--~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~-lp~~i~~L~~L~~L 591 (922)
++++.|++++|.+. .++.. ..+++|++|++++|.+..+ ..+..+++|++|++++| .+.. +|..++.+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCC-cCchHHHHHHhhCCCCCEE
Confidence 57889999999887 67665 6788899999999988777 44888899999999998 6665 77777778999999
Q ss_pred eeccCCccccc--hhhccCCCCCEEeCCCCccccccCh---hhhCCCCCCCEEEeecCCc
Q 042817 592 NLSSTGIRVLP--EELKALKDLSYLNMERTSFVRRIPR---QLISNFPLLRVLRMLDCGA 646 (922)
Q Consensus 592 ~L~~~~i~~lp--~~l~~l~~L~~L~l~~~~~l~~lp~---~~i~~l~~L~~L~l~~~~~ 646 (922)
++++|.++.+| ..+..+++|++|++++|. +..+|. ..+..+++|++|++.+|..
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 99999998876 678889999999999987 466665 4588899999999988863
No 121
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.37 E-value=1.5e-12 Score=133.13 Aligned_cols=147 Identities=21% Similarity=0.285 Sum_probs=122.7
Q ss_pred ceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCcc-ccCcccCCeeeeccC
Q 042817 518 VKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPG-ISKLISLQYLNLSST 596 (922)
Q Consensus 518 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~L~~~ 596 (922)
.+.++.+++.+..+|.. -.++|++|++++|.+..+++..|..+++|++|+|++| .+..+|.. ++.+++|++|+|++|
T Consensus 21 ~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC
Confidence 45678888888888764 3489999999999999998888999999999999999 78888754 689999999999999
Q ss_pred Cccccchh-hccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCce
Q 042817 597 GIRVLPEE-LKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSV 675 (922)
Q Consensus 597 ~i~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~ 675 (922)
.++.+|.. +..+++|++|++++|. +..+|.. +.++++|++|++++|.... .....+..+++|+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~-------------~~~~~~~~l~~L~~ 163 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNK-LTELPRG-IERLTHLTHLALDQNQLKS-------------IPHGAFDRLSSLTH 163 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTT-GGGCTTCSEEECCSSCCCC-------------CCTTTTTTCTTCCE
T ss_pred cCCccChhHhCcchhhCeEeccCCc-ccccCcc-cccCCCCCEEECCCCcCCc-------------cCHHHHhCCCCCCE
Confidence 99998865 6899999999999997 6789987 7999999999999987321 12234667778888
Q ss_pred EEEEEe
Q 042817 676 LSVCLE 681 (922)
Q Consensus 676 L~l~~~ 681 (922)
|++..+
T Consensus 164 L~l~~N 169 (229)
T 3e6j_A 164 AYLFGN 169 (229)
T ss_dssp EECTTS
T ss_pred EEeeCC
Confidence 877644
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.37 E-value=7.4e-13 Score=129.34 Aligned_cols=127 Identities=23% Similarity=0.322 Sum_probs=71.5
Q ss_pred cccceEEeeecccccccccccCCC-CceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccc-cCcccCCeee
Q 042817 515 WKGVKRMSLMNNKIRNLSEPATCP-HLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGI-SKLISLQYLN 592 (922)
Q Consensus 515 ~~~l~~l~l~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i-~~L~~L~~L~ 592 (922)
+.+++.|++++|.+..++....+. +|++|++++|.+..+ ..+..+++|++|+|++| .+..+|+.+ +.+++|++|+
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEE
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEE
Confidence 345666666666665554443333 566666666655554 22555666666666666 555555443 5566666666
Q ss_pred eccCCccccch--hhccCCCCCEEeCCCCccccccChh---hhCCCCCCCEEEeecCC
Q 042817 593 LSSTGIRVLPE--ELKALKDLSYLNMERTSFVRRIPRQ---LISNFPLLRVLRMLDCG 645 (922)
Q Consensus 593 L~~~~i~~lp~--~l~~l~~L~~L~l~~~~~l~~lp~~---~i~~l~~L~~L~l~~~~ 645 (922)
+++|.++.+|. .++.+++|++|++++|. +..+|.. ++..+++|+.|++.+|.
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 66666665554 55566666666666665 3444442 34555666666555554
No 123
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.37 E-value=1.7e-11 Score=136.34 Aligned_cols=303 Identities=15% Similarity=-0.001 Sum_probs=183.0
Q ss_pred CcccchhhHHHHHHHHhcc----CCeeEEEEEcCCCCcHHHHHHHHHHHhhhc---cCC--CceEEEEEeCCCC-CHHHH
Q 042817 157 PRIIGQESIFDDAWRCMIE----EQVGIIGLYGAGGVGKTTLLKQLNNKLCQE---RHD--FDIVIWVVVSKDL-NLEKV 226 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~--F~~~~wv~~s~~~-~~~~~ 226 (922)
..++||+.+++++.+++.. ...+.+.|+|++|+||||+|+++++..... ... ....+|+++.... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 5789999999999887753 345689999999999999999999886221 011 3457888887776 88888
Q ss_pred HHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCccc--cccc-cccCCCCCCCcEEEEEcCChhhhcc
Q 042817 227 QEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPVD--LTKV-GVPIPNSTNASKVVFTTRYKEVCGK 303 (922)
Q Consensus 227 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--~~~l-~~~~~~~~~gs~IivTtR~~~v~~~ 303 (922)
...++.++..................+.+.+..++.+|||||++.... .... ...+.....+..||+||+.......
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~~ 179 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDY 179 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHhh
Confidence 888888873221111233445667778888887777999999976421 1111 1111111167789999987642111
Q ss_pred c------cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhC---Cchh-HHHHHHhh--hc---cCC
Q 042817 304 M------EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECG---GLPL-AIITIGRA--MS---CKN 368 (922)
Q Consensus 304 ~------~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~---glPL-ai~~~g~~--L~---~~~ 368 (922)
+ .....+.+++++.++..+++...+...- ....-..+..+.|++.|+ |.|. |+..+-.. ++ ..-
T Consensus 180 l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i 258 (384)
T 2qby_B 180 MEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGL-IKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGII 258 (384)
T ss_dssp SCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTS-CTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCC
T ss_pred hCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhc-ccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCcc
Confidence 1 1123899999999999999998753100 001112456778888888 8886 44333222 22 124
Q ss_pred CHHHHHHHHHHHhccCCCCCCccchhhhhhhhcCCCCCchhhhhhhhcccCCCCCccCHHHHHHHHhhcCCccccccchh
Q 042817 369 KLEEWKHAVNVLKKSSSKFPGMDAMYPHLKFSYDRLPDNKIRSCFLYCSLFPEDYKISKEDLIDCWIGEEFFDEEHNGIG 448 (922)
Q Consensus 369 ~~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~ 448 (922)
+.+.+..+++.... ..+.-+++.|+. +.+..+..++....+-.+. ......--..| .. ..
T Consensus 259 ~~~~v~~~~~~~~~------------~~~~~~~~~l~~-~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~-----~~ 318 (384)
T 2qby_B 259 RKEHVDKAIVDYEQ------------ERLIEAVKALPF-HYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QK-----PL 318 (384)
T ss_dssp CHHHHHHHHHHHHH------------HHHHHHHHSSCH-HHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CC-----CC
T ss_pred CHHHHHHHHHHHhc------------chHHHHHHcCCH-HHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CC-----CC
Confidence 56667666654321 335566778886 5666555555411100110 01111111122 11 12
Q ss_pred hHhhHHHHHHHHHHhcccccc-----CcceEEEccee
Q 042817 449 ARNEGYAIIGDLIRTCLLEED-----ADDFVELHDVV 480 (922)
Q Consensus 449 ~~~~~~~~~~~L~~~sll~~~-----~~~~~~mHdlv 480 (922)
.......+++.|...++++.. ..+.++++.+.
T Consensus 319 ~~~~~~~~l~~L~~~gli~~~~~~~g~~g~~~~~~l~ 355 (384)
T 2qby_B 319 SYRRFSDIISELDMFGIVKIRIINRGRAGGVKKYALV 355 (384)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEEECCTTTTCCEEEEEE
T ss_pred CHHHHHHHHHHHHhCCCEEEEeccCCCCCceEEEEec
Confidence 235667889999999999863 23455565554
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.35 E-value=1.1e-12 Score=124.30 Aligned_cols=123 Identities=28% Similarity=0.285 Sum_probs=84.9
Q ss_pred ccceEEeeeccccc--ccccc-cCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcc-cCccccCcccCCee
Q 042817 516 KGVKRMSLMNNKIR--NLSEP-ATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLRE-FPPGISKLISLQYL 591 (922)
Q Consensus 516 ~~l~~l~l~~~~~~--~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~-lp~~i~~L~~L~~L 591 (922)
++++.|++++|.+. .++.. ..+++|++|++++|.+..+ ..+..+++|++|++++| .+.. +|..++.+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCEE
Confidence 46777777777776 45544 5677777777777777666 34677777777777777 5555 66666667777777
Q ss_pred eeccCCccccc--hhhccCCCCCEEeCCCCccccccCh---hhhCCCCCCCEEEee
Q 042817 592 NLSSTGIRVLP--EELKALKDLSYLNMERTSFVRRIPR---QLISNFPLLRVLRML 642 (922)
Q Consensus 592 ~L~~~~i~~lp--~~l~~l~~L~~L~l~~~~~l~~lp~---~~i~~l~~L~~L~l~ 642 (922)
++++|.++.+| ..++.+++|++|++++|. +..+|. ..+..+++|++|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 77777777654 667777777777777775 455554 346677777777654
No 125
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.35 E-value=3.1e-12 Score=140.68 Aligned_cols=163 Identities=23% Similarity=0.317 Sum_probs=118.3
Q ss_pred CCccccCCCccccccceEEeeecccccccccc--c-CCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccC
Q 042817 503 GVGLTEAPGIEKWKGVKRMSLMNNKIRNLSEP--A-TCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFP 579 (922)
Q Consensus 503 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~--~-~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp 579 (922)
+.++..+|. .-...++.|++++|.+..++.. . .+++|++|++++|.+..+++..|.++++|++|+|++| .+..+|
T Consensus 27 ~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~ 104 (361)
T 2xot_A 27 KQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLD 104 (361)
T ss_dssp SSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEEC
T ss_pred CCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cCCcCC
Confidence 334445543 2234678888888888877654 3 7888888888888888888777888888899998888 677766
Q ss_pred c-cccCcccCCeeeeccCCcccc-chhhccCCCCCEEeCCCCccccccChhhh---CCCCCCCEEEeecCCcccccccCc
Q 042817 580 P-GISKLISLQYLNLSSTGIRVL-PEELKALKDLSYLNMERTSFVRRIPRQLI---SNFPLLRVLRMLDCGALERAEHGS 654 (922)
Q Consensus 580 ~-~i~~L~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~~~i---~~l~~L~~L~l~~~~~~~~~~~~~ 654 (922)
. .+..+.+|++|+|++|.|+.+ |..+..+++|++|++++|. +..+|...+ .++++|++|++++|...
T Consensus 105 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~------- 176 (361)
T 2xot_A 105 EFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLK------- 176 (361)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCC-------
T ss_pred HHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCC-------
Confidence 5 578888888898888888876 5578888888888888886 577887755 56888888888887632
Q ss_pred ccccCccchHHHhhcCCCC--ceEEEEEe
Q 042817 655 VLFNGGEILIEELLCLNHL--SVLSVCLE 681 (922)
Q Consensus 655 ~~~~~~~~~~~~L~~L~~L--~~L~l~~~ 681 (922)
......+..++.+ +.|++..+
T Consensus 177 ------~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 177 ------KLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp ------CCCHHHHHHSCHHHHTTEECCSS
T ss_pred ------ccCHHHhhhccHhhcceEEecCC
Confidence 2234455555553 55666543
No 126
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.35 E-value=1.6e-11 Score=136.59 Aligned_cols=301 Identities=15% Similarity=0.068 Sum_probs=182.7
Q ss_pred CcccchhhHHHHHHHHhcc----CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcc---CCCceEEEEEeCCCCCHHHHHHH
Q 042817 157 PRIIGQESIFDDAWRCMIE----EQVGIIGLYGAGGVGKTTLLKQLNNKLCQER---HDFDIVIWVVVSKDLNLEKVQED 229 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~F~~~~wv~~s~~~~~~~~~~~ 229 (922)
..++||+.+++++.+++.. ...+.+.|+|++|+||||+|+++++...... ..-...+|+++....+...+...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 6789999999999998843 3556899999999999999999998862110 11235678888888888999999
Q ss_pred HHhhccCCcccccCCChhhhHHHHHHHhc--CCcEEEEEccCCCccc-------cccccccCCCC--CCCcEEEEEcCCh
Q 042817 230 IGKKIDMFSESWKNKSPVEKSCAIFKILS--NKKFVLLLDDMWEPVD-------LTKVGVPIPNS--TNASKVVFTTRYK 298 (922)
Q Consensus 230 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~-------~~~l~~~~~~~--~~gs~IivTtR~~ 298 (922)
++.+++.... .......+....+.+.+. +++.+|||||++.... +..+....... ..+..+|.||+..
T Consensus 99 l~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 99 IAEAVGVRVP-FTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHSCCCC-SSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHhCCCCC-CCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 9998865322 123345555667777763 4689999999976421 11111111111 3456788888766
Q ss_pred hhhcccc-------ccceeecCCCCHHHHHHHHHHhhCC--CCCCCCCChhHHHHHHHHHhC---Cchh-HHHHHHhhhc
Q 042817 299 EVCGKME-------AHKKLRVECLTADDAWMLFKVKVGE--DTIDSHPEIPKHAQLVAKECG---GLPL-AIITIGRAMS 365 (922)
Q Consensus 299 ~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~---glPL-ai~~~g~~L~ 365 (922)
.....+. ....+.+++++.++..+++...+.. ..... ..+..+.+++.++ |.|- ++..+..+..
T Consensus 178 ~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~ 254 (387)
T 2v1u_A 178 GFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVL---DPDVVPLCAALAAREHGDARRALDLLRVAGE 254 (387)
T ss_dssp TTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTB---CSSHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCC---CHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 3321111 1147899999999999999877532 11111 1345677888888 9994 3333322211
Q ss_pred -----c--CCCHHHHHHHHHHHhccCCCCCCccchhhhhhhhcCCCCCchhhhhhhhcc-cCCCCCccCHHHHHHHHhh-
Q 042817 366 -----C--KNKLEEWKHAVNVLKKSSSKFPGMDAMYPHLKFSYDRLPDNKIRSCFLYCS-LFPEDYKISKEDLIDCWIG- 436 (922)
Q Consensus 366 -----~--~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s-~fp~~~~i~~~~li~~W~a- 436 (922)
+ .-+.+.++.+++.... ..+.-++..|+. +.+..+..++ ++-....+...++.+....
T Consensus 255 ~a~~~~~~~i~~~~v~~a~~~~~~------------~~~~~~~~~l~~-~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~ 321 (387)
T 2v1u_A 255 IAERRREERVRREHVYSARAEIER------------DRVSEVVRTLPL-HAKLVLLSIMMLEDGGRPASTGEIYERYKEL 321 (387)
T ss_dssp HHHHTTCSCBCHHHHHHHHHHHHH------------HHHHHHHHSSCH-HHHHHHHHHHHHSSSSCCEEHHHHHHHHHHH
T ss_pred HHHHcCCCCcCHHHHHHHHHHHhh------------chHHHHHHcCCH-HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 1 1345566665554321 234456778887 5565555455 3432234444434333211
Q ss_pred ---cCCccccccchhhHhhHHHHHHHHHHhcccccc-----CcceEEEccee
Q 042817 437 ---EEFFDEEHNGIGARNEGYAIIGDLIRTCLLEED-----ADDFVELHDVV 480 (922)
Q Consensus 437 ---~g~i~~~~~~~~~~~~~~~~~~~L~~~sll~~~-----~~~~~~mHdlv 480 (922)
.| .. .........+++.|...++++.. ..+.++.+.+.
T Consensus 322 ~~~~~-~~-----~~~~~~~~~~l~~L~~~gli~~~~~~~g~~g~~~~~~l~ 367 (387)
T 2v1u_A 322 TSTLG-LE-----HVTLRRVSGIISELDMLGIVKSRVVSRGRYGKTREVSLD 367 (387)
T ss_dssp HHHTT-CC-----CCCHHHHHHHHHHHHHTTSEEEEEEECGGGCEEEEEEEC
T ss_pred HHhcC-CC-----CCCHHHHHHHHHHHHhCCCeEEEeecCCCCCceeEEEec
Confidence 12 11 11235667889999999999874 23445555444
No 127
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.34 E-value=4.3e-12 Score=146.37 Aligned_cols=186 Identities=20% Similarity=0.226 Sum_probs=128.4
Q ss_pred CCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeeeccCCccccchhhccCCCCCEEeCC
Q 042817 538 PHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSSTGIRVLPEELKALKDLSYLNME 617 (922)
Q Consensus 538 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~ 617 (922)
.+|+.|++++|.+..+|... +++|++|+|++| .++.+| +.+++|++|++++|.++.+|. +.. +|++|+++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL---PPQITVLEITQN-ALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC---CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred CCccEEEeCCCCCCccCHhH---cCCCCEEECcCC-CCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence 47999999999998888764 378999999999 788888 468899999999999999988 665 99999999
Q ss_pred CCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCceEEEEEechhHHHHHhhcccccC
Q 042817 618 RTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSVLSVCLESDQALRKFLSSYRLKS 697 (922)
Q Consensus 618 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ 697 (922)
+|. +..+|. .+++|++|++++|.... ... .+++
T Consensus 129 ~N~-l~~lp~----~l~~L~~L~Ls~N~l~~--------------lp~---~l~~------------------------- 161 (571)
T 3cvr_A 129 NNQ-LTMLPE----LPALLEYINADNNQLTM--------------LPE---LPTS------------------------- 161 (571)
T ss_dssp SSC-CSCCCC----CCTTCCEEECCSSCCSC--------------CCC---CCTT-------------------------
T ss_pred CCc-CCCCCC----cCccccEEeCCCCccCc--------------CCC---cCCC-------------------------
Confidence 997 566876 57899999999887221 000 2334
Q ss_pred cceEEEEcCcccccccccccccccccccceeeecccCCcceeecccccccCCCCCccCCcccEEEEecCCCCCCCch-hh
Q 042817 698 STQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPETSRFHNLHRVGIVNCKSLKDITW-LI 776 (922)
Q Consensus 698 ~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~ 776 (922)
|+.|+++++.. ..+.. +. ++|+.|++++|.+..++. +.. .. ....+.|+.|+|++| .++.+|. +.
T Consensus 162 -L~~L~Ls~N~L--~~lp~--l~--~~L~~L~Ls~N~L~~lp~--~~~--~L--~~~~~~L~~L~Ls~N-~l~~lp~~l~ 227 (571)
T 3cvr_A 162 -LEVLSVRNNQL--TFLPE--LP--ESLEALDVSTNLLESLPA--VPV--RN--HHSEETEIFFRCREN-RITHIPENIL 227 (571)
T ss_dssp -CCEEECCSSCC--SCCCC--CC--TTCCEEECCSSCCSSCCC--CC------------CCEEEECCSS-CCCCCCGGGG
T ss_pred -cCEEECCCCCC--CCcch--hh--CCCCEEECcCCCCCchhh--HHH--hh--hcccccceEEecCCC-cceecCHHHh
Confidence 44444444431 11111 22 788889998887766533 210 00 001223388999887 6666764 77
Q ss_pred ccCCCcEEEEeccccchh
Q 042817 777 FAPNLRILEISYCFEMTE 794 (922)
Q Consensus 777 ~l~~L~~L~L~~c~~l~~ 794 (922)
.+++|+.|+|+++.--..
T Consensus 228 ~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 228 SLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp GSCTTEEEECCSSSCCHH
T ss_pred cCCCCCEEEeeCCcCCCc
Confidence 789999999988653333
No 128
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.33 E-value=4.7e-12 Score=127.45 Aligned_cols=124 Identities=25% Similarity=0.413 Sum_probs=106.7
Q ss_pred eEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCcc-ccCcccCCeeeeccCC
Q 042817 519 KRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPG-ISKLISLQYLNLSSTG 597 (922)
Q Consensus 519 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~L~~~~ 597 (922)
+.++..++.+..+|.. ..++|++|++++|.+..+++..|..+++|++|++++| .++.+|.. +..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc
Confidence 4566666777766543 3568999999999999999988999999999999999 78887765 6899999999999999
Q ss_pred ccccchh-hccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCC
Q 042817 598 IRVLPEE-LKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 598 i~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 645 (922)
++.+|.. +..+++|++|++++|. +..+|...+.++++|++|++++|.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ 135 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCc
Confidence 9988865 6899999999999997 577887768999999999999986
No 129
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.30 E-value=6.4e-12 Score=138.14 Aligned_cols=124 Identities=23% Similarity=0.281 Sum_probs=94.9
Q ss_pred eEEeeecccccccccccCCCCceEEEeccCcccccchhhhc-cCCCceEEEccCCCCCcccC-ccccCcccCCeeeeccC
Q 042817 519 KRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQ-FMPSLKVLNLSNNFSLREFP-PGISKLISLQYLNLSST 596 (922)
Q Consensus 519 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~l~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~L~~~ 596 (922)
+.++.+++.+..+|.. -.+.++.|++++|.++.+++..|. ++++|++|+|++| .+..+| ..+.++++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC
Confidence 5677777777777653 235678888888888888877776 7888888888888 677665 45788888888888888
Q ss_pred Cccccch-hhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCC
Q 042817 597 GIRVLPE-ELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 597 ~i~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 645 (922)
+++.+|. .+..+++|++|++++|. +..++...+.++++|++|++++|.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~ 147 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQ 147 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCc
Confidence 8887765 47788888888888887 456655557888888888888776
No 130
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.29 E-value=7.1e-11 Score=131.48 Aligned_cols=289 Identities=13% Similarity=0.053 Sum_probs=177.1
Q ss_pred CcccchhhHHHHHHHHhcc----CCee--EEEEEcCCCCcHHHHHHHHHHHhhhccCC-CceEEEEEeCCCCCHHHHHHH
Q 042817 157 PRIIGQESIFDDAWRCMIE----EQVG--IIGLYGAGGVGKTTLLKQLNNKLCQERHD-FDIVIWVVVSKDLNLEKVQED 229 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~----~~~~--vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-F~~~~wv~~s~~~~~~~~~~~ 229 (922)
+.++||+.+++++.+++.. .... .+.|+|++|+||||+|+.+++.. ... -..++|++++...+...+...
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY---KDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH---TTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH---hhhcCeeEEEEeCccCCCHHHHHHH
Confidence 5799999999999998864 2223 89999999999999999999987 222 135778888888888899999
Q ss_pred HHhhccCCcccccCCChhhhHHHHHHHhc--CCcEEEEEccCCCc--cccccccccCCCC-C---CCcEEEEEcCChhhh
Q 042817 230 IGKKIDMFSESWKNKSPVEKSCAIFKILS--NKKFVLLLDDMWEP--VDLTKVGVPIPNS-T---NASKVVFTTRYKEVC 301 (922)
Q Consensus 230 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~--~~~~~l~~~~~~~-~---~gs~IivTtR~~~v~ 301 (922)
++..++..... ......+....+.+.+. +++.+||||+++.. ..+..+...+... . .+..||+||+.....
T Consensus 94 l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 94 IARSLNIPFPR-RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp HHHHTTCCCCS-SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred HHHHhCccCCC-CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 99888653211 22345555566666654 56899999999764 2233332222211 1 366788888776443
Q ss_pred cccc-------ccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHh---------CCchhHHHHHHhh-h
Q 042817 302 GKME-------AHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKEC---------GGLPLAIITIGRA-M 364 (922)
Q Consensus 302 ~~~~-------~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c---------~glPLai~~~g~~-L 364 (922)
..+. ....+.+++++.++..+++...+.... ....--.+..+.|++.+ +|.|..+..+... .
T Consensus 173 ~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 173 NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL-AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp HTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB-CTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 2221 123699999999999999987753210 00122356778899999 7887544433222 1
Q ss_pred c-----cC--CCHHHHHHHHHHHhccCCCCCCccchhhhhhhhcCCCCCchhhhhhhhcccCC---CCCccCHHHHHHHH
Q 042817 365 S-----CK--NKLEEWKHAVNVLKKSSSKFPGMDAMYPHLKFSYDRLPDNKIRSCFLYCSLFP---EDYKISKEDLIDCW 434 (922)
Q Consensus 365 ~-----~~--~~~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s~fp---~~~~i~~~~li~~W 434 (922)
. +. -+.+....+.+.... ..+.-.+..|+. +.+.++..++.+. .+..+....+...+
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~~------------~~~~~~l~~l~~-~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~ 318 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVLF------------GISEEVLIGLPL-HEKLFLLAIVRSLKISHTPYITFGDAEESY 318 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHSC------------CCCHHHHHHSCH-HHHHHHHHHHHHHHHHCSSCEEHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHhh------------hhHHHHHHcCCH-HHHHHHHHHHHHHhhccCCCccHHHHHHHH
Confidence 1 11 222333333222211 112233456776 6676666666543 22145555555544
Q ss_pred hh----cCCccccccchhhHhhHHHHHHHHHHhcccccc
Q 042817 435 IG----EEFFDEEHNGIGARNEGYAIIGDLIRTCLLEED 469 (922)
Q Consensus 435 ~a----~g~i~~~~~~~~~~~~~~~~~~~L~~~sll~~~ 469 (922)
.. .|.. . -.......++++|...+++...
T Consensus 319 ~~~~~~~~~~-~-----~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 319 KIVCEEYGER-P-----RVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHHHHHTTCC-C-----CCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHcCCC-C-----CCHHHHHHHHHHHHhCCCeEEe
Confidence 32 1211 1 1234566789999999999874
No 131
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.27 E-value=3.3e-11 Score=134.00 Aligned_cols=303 Identities=13% Similarity=0.062 Sum_probs=177.1
Q ss_pred CcccchhhHHHHHHHHhcc----CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHh
Q 042817 157 PRIIGQESIFDDAWRCMIE----EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGK 232 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 232 (922)
..|+||+.+++++.+++.. ...+.+.|+|++|+||||||+++++........-...+|+++....+...+...++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999998873 445789999999999999999999987211110235778887777788888889888
Q ss_pred hccCCcccccCCChhhhHHHHHHHhc--CCcEEEEEccCCCcc------ccccccccCCC-CCCCcEEEEEcCChhhhcc
Q 042817 233 KIDMFSESWKNKSPVEKSCAIFKILS--NKKFVLLLDDMWEPV------DLTKVGVPIPN-STNASKVVFTTRYKEVCGK 303 (922)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~------~~~~l~~~~~~-~~~gs~IivTtR~~~v~~~ 303 (922)
+++..... ...+..+....+.+.+. +++.+||||+++... .+..+...+.. ...+..+|+||+.......
T Consensus 100 ~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 100 SLDVKVPF-TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp TTSCCCCS-SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred HhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 88653221 22334555666666665 358999999997532 12222111111 2335567888887654322
Q ss_pred cc-------ccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhC---CchhHHHH-HHhhh--c---c-
Q 042817 304 ME-------AHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECG---GLPLAIIT-IGRAM--S---C- 366 (922)
Q Consensus 304 ~~-------~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~---glPLai~~-~g~~L--~---~- 366 (922)
+. ....+.+++++.++..+++...+.... ....-..+..+.+++.++ |.|..+.. +.... + +
T Consensus 179 ~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~ 257 (386)
T 2qby_A 179 LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF-KPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKD 257 (386)
T ss_dssp CTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB-CSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC
Confidence 21 114799999999999999987643110 011223566777888887 99984433 32221 1 1
Q ss_pred -CCCHHHHHHHHHHHhccCCCCCCccchhhhhhhhcCCCCCchhhhhhhhcccCCC-C-CccCHHHHHHHHh--h--cCC
Q 042817 367 -KNKLEEWKHAVNVLKKSSSKFPGMDAMYPHLKFSYDRLPDNKIRSCFLYCSLFPE-D-YKISKEDLIDCWI--G--EEF 439 (922)
Q Consensus 367 -~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s~fp~-~-~~i~~~~li~~W~--a--~g~ 439 (922)
.-+.+..+.+++... ...+.-.+..+|. +.+..+..++...+ + ..+...++.+... + .|
T Consensus 258 ~~i~~~~v~~a~~~~~------------~~~~~~~~~~l~~-~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g- 323 (386)
T 2qby_A 258 TKVKEEYVYMAKEEIE------------RDRVRDIILTLPF-HSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG- 323 (386)
T ss_dssp SSCCHHHHHHHHHHHH------------HHHHHHHHHTSCH-HHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT-
T ss_pred CccCHHHHHHHHHHHh------------hchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC-
Confidence 124455555444322 1234555667876 55655555553211 1 1223332322111 1 11
Q ss_pred ccccccchhhHhhHHHHHHHHHHhcccccc-----CcceEEEccee
Q 042817 440 FDEEHNGIGARNEGYAIIGDLIRTCLLEED-----ADDFVELHDVV 480 (922)
Q Consensus 440 i~~~~~~~~~~~~~~~~~~~L~~~sll~~~-----~~~~~~mHdlv 480 (922)
+.. ........+++.|...++++.. ..+.|+.+.+.
T Consensus 324 ~~~-----~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~y~~~~l~ 364 (386)
T 2qby_A 324 VEA-----VTQRRVSDIINELDMVGILTAKVVNRGRYGKTKEIGLA 364 (386)
T ss_dssp CCC-----CCHHHHHHHHHHHHHHTSEEEEECCCTTSCCCEEEEES
T ss_pred CCC-----CCHHHHHHHHHHHHhCCCEEEEeecCCCCCCeEEEEeC
Confidence 111 1124556789999999999753 23445555443
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.27 E-value=1.1e-11 Score=120.90 Aligned_cols=144 Identities=17% Similarity=0.199 Sum_probs=114.2
Q ss_pred ccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeeeccCCccccchhh-c
Q 042817 528 IRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSSTGIRVLPEEL-K 606 (922)
Q Consensus 528 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~l-~ 606 (922)
+...+....+.+|+.|++++|.+..++. .....++|++|++++| .++.+ +.++.+++|++|++++|.++.+|..+ +
T Consensus 9 i~~~~~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 85 (176)
T 1a9n_A 9 IEQAAQYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQ 85 (176)
T ss_dssp HHTSCEEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred HHHHHhcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcchhh
Confidence 3344555778999999999999988753 3343449999999999 88888 57999999999999999999998765 9
Q ss_pred cCCCCCEEeCCCCccccccCh-hhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCceEEEEEechhH
Q 042817 607 ALKDLSYLNMERTSFVRRIPR-QLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSVLSVCLESDQA 685 (922)
Q Consensus 607 ~l~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~ 685 (922)
.+++|++|++++|. +..+|. ..+.++++|++|++++|.... ........+..+++|+.|+++.+....
T Consensus 86 ~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~----------~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 86 ALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTN----------KKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp HCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGG----------STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred cCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCC----------cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 99999999999997 577876 238899999999999987321 111122347789999999988776543
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.25 E-value=2.9e-11 Score=119.71 Aligned_cols=123 Identities=20% Similarity=0.318 Sum_probs=105.5
Q ss_pred eEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccC-ccccCcccCCeeeeccCC
Q 042817 519 KRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFP-PGISKLISLQYLNLSSTG 597 (922)
Q Consensus 519 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~L~~~~ 597 (922)
+.++++++.+..+|.. -.++|++|++++|.+..++. .|.++++|++|+|++| .++.+| ..+.++++|++|+|++|.
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~-~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCG-GGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHH-HhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc
Confidence 5678888888888754 34689999999999988884 5899999999999999 777766 468999999999999999
Q ss_pred ccccch-hhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCC
Q 042817 598 IRVLPE-ELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 598 i~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 645 (922)
++.+|. .+..+++|++|++++|. +..+|.+.+..+++|++|++.+|.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence 998875 58999999999999997 678888778899999999999886
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.25 E-value=2.8e-11 Score=118.27 Aligned_cols=125 Identities=19% Similarity=0.355 Sum_probs=108.9
Q ss_pred ceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCcc-ccCcccCCeeeeccC
Q 042817 518 VKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPG-ISKLISLQYLNLSST 596 (922)
Q Consensus 518 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~L~~~ 596 (922)
.+.+++.++.+..+|.. ..++|+.|++++|.+..+++..|..+++|++|++++| .++.+|.. ++.+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTT-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCC-CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC
Confidence 45678888888877643 3478999999999999999888899999999999999 78887765 689999999999999
Q ss_pred Cccccchh-hccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCC
Q 042817 597 GIRVLPEE-LKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 597 ~i~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 645 (922)
.++.+|.. +..+++|++|++++|. +..+|...+.++++|++|++.+|.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence 99988875 6899999999999997 578888767899999999999987
No 135
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.25 E-value=1.6e-11 Score=118.89 Aligned_cols=134 Identities=22% Similarity=0.238 Sum_probs=108.4
Q ss_pred cCCCCceEEEeccCccc--ccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeeeccCCccc-cchhhccCCCC
Q 042817 535 ATCPHLLTLFLQNNRLS--NITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSSTGIRV-LPEELKALKDL 611 (922)
Q Consensus 535 ~~~~~L~~L~l~~~~l~--~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~-lp~~l~~l~~L 611 (922)
...++|+.|++++|.+. .++.. +..+++|++|++++| .+..+ ..++.+++|++|++++|.++. +|..+.++++|
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred CCcccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 34588999999999988 66554 789999999999999 68877 779999999999999999998 88888889999
Q ss_pred CEEeCCCCccccccCh-hhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCceEEEEEec
Q 042817 612 SYLNMERTSFVRRIPR-QLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSVLSVCLES 682 (922)
Q Consensus 612 ~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~ 682 (922)
++|++++|. +..+|. ..+.++++|++|++++|.... ........+..+++|+.|++..+.
T Consensus 98 ~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~----------~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 98 THLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTN----------LNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGT----------STTHHHHHHTTCSSCCEETTEETT
T ss_pred CEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcc----------hHHHHHHHHHhCccCcEecCCCCC
Confidence 999999997 577652 348999999999999987321 111112467788888888876544
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.24 E-value=2.4e-11 Score=120.27 Aligned_cols=124 Identities=19% Similarity=0.308 Sum_probs=105.7
Q ss_pred eEEeeecccccccccccCCCCceEEEeccCcccccchh-hhccCCCceEEEccCCCCCccc-CccccCcccCCeeeeccC
Q 042817 519 KRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITAN-FFQFMPSLKVLNLSNNFSLREF-PPGISKLISLQYLNLSST 596 (922)
Q Consensus 519 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~ 596 (922)
+.++++++.+..+|... ..+|++|++++|.+..+++. .|..+++|++|+|++| .++.+ |..++.+++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCC
Confidence 67889999988887632 34899999999999888864 5899999999999999 66665 778999999999999999
Q ss_pred Cccccchh-hccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCC
Q 042817 597 GIRVLPEE-LKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 597 ~i~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 645 (922)
+++.+|.. +..+++|++|++++|.. ..+++..+..+++|++|++.+|.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQI-SCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCC-CEECTTSSTTCTTCCEEECTTCC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcC-CeeCHHHhhcCCCCCEEEeCCCC
Confidence 99988764 88999999999999984 55544458999999999999987
No 137
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.22 E-value=1.2e-11 Score=117.16 Aligned_cols=129 Identities=19% Similarity=0.273 Sum_probs=104.3
Q ss_pred CCCCceEEEeccCccc--ccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeeeccCCccc-cchhhccCCCCC
Q 042817 536 TCPHLLTLFLQNNRLS--NITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSSTGIRV-LPEELKALKDLS 612 (922)
Q Consensus 536 ~~~~L~~L~l~~~~l~--~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~-lp~~l~~l~~L~ 612 (922)
..++|+.|++++|.+. .++. .+..+++|++|++++| .+..+ ..++.+++|++|++++|.++. +|..++.+++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 4578999999999988 5554 5789999999999999 78777 679999999999999999998 888888899999
Q ss_pred EEeCCCCccccccCh-hhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCceEEE
Q 042817 613 YLNMERTSFVRRIPR-QLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSVLSV 678 (922)
Q Consensus 613 ~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l 678 (922)
+|++++|. +..+|. ..++++++|++|++++|.... ........+..+++|+.|++
T Consensus 92 ~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~----------~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 92 HLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTN----------LNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGG----------STTHHHHHHHHCTTCCEETT
T ss_pred EEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccc----------hHHHHHHHHHHCCCcccccC
Confidence 99999997 566541 348999999999999987321 11111246777888887764
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.20 E-value=1e-11 Score=144.08 Aligned_cols=119 Identities=19% Similarity=0.316 Sum_probs=87.3
Q ss_pred ceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeeeccCC
Q 042817 518 VKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSSTG 597 (922)
Q Consensus 518 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~ 597 (922)
++.+.+.+|.+..++. ..|++|++++|.++.+|. |+.+++|++|+|++| .++.+|..++++++|++|+|++|.
T Consensus 425 L~~l~l~~n~i~~l~~----~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~ 497 (567)
T 1dce_A 425 LRSKFLLENSVLKMEY----ADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNA 497 (567)
T ss_dssp HHHHHHHHHHHHHHHH----TTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC
T ss_pred hhhhhhhcccccccCc----cCceEEEecCCCCCCCcC--ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCC
Confidence 3334444555544433 247788888888877764 777888888888888 777888888888888888888888
Q ss_pred ccccchhhccCCCCCEEeCCCCcccccc--ChhhhCCCCCCCEEEeecCCc
Q 042817 598 IRVLPEELKALKDLSYLNMERTSFVRRI--PRQLISNFPLLRVLRMLDCGA 646 (922)
Q Consensus 598 i~~lp~~l~~l~~L~~L~l~~~~~l~~l--p~~~i~~l~~L~~L~l~~~~~ 646 (922)
++.+| .++.+++|++|++++|. +..+ |.. ++++++|++|++++|..
T Consensus 498 l~~lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~~-l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 498 LENVD-GVANLPRLQELLLCNNR-LQQSAAIQP-LVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp CCCCG-GGTTCSSCCEEECCSSC-CCSSSTTGG-GGGCTTCCEEECTTSGG
T ss_pred CCCCc-ccCCCCCCcEEECCCCC-CCCCCCcHH-HhcCCCCCEEEecCCcC
Confidence 88887 78888888888888886 4555 554 77888888888888763
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.14 E-value=8e-11 Score=136.57 Aligned_cols=121 Identities=22% Similarity=0.280 Sum_probs=107.4
Q ss_pred cceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeeeccC
Q 042817 517 GVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSST 596 (922)
Q Consensus 517 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~ 596 (922)
.++.|++++|.+..+|....+++|+.|++++|.++.+|.. |+.+++|++|+|++| .++.+| .++.+++|++|+|++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccchh-hhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC
Confidence 4889999999999999888999999999999999988774 899999999999999 888898 8999999999999999
Q ss_pred Ccccc--chhhccCCCCCEEeCCCCccccccChh---hhCCCCCCCEEEe
Q 042817 597 GIRVL--PEELKALKDLSYLNMERTSFVRRIPRQ---LISNFPLLRVLRM 641 (922)
Q Consensus 597 ~i~~l--p~~l~~l~~L~~L~l~~~~~l~~lp~~---~i~~l~~L~~L~l 641 (922)
.++.+ |..++.+++|++|++++|. +..+|+. ++..+++|+.|++
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 99988 8999999999999999998 4555543 2345888888863
No 140
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.14 E-value=3.3e-10 Score=117.02 Aligned_cols=196 Identities=14% Similarity=0.165 Sum_probs=115.4
Q ss_pred CcccchhhHHHHHHHHhccCC-eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhcc
Q 042817 157 PRIIGQESIFDDAWRCMIEEQ-VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (922)
..++||+..++.+..++.... .+.+.|+|++|+||||+|+++++... ....+.. ........ ...+.....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~-~~~~~~~------~~~~~~~~-~~~~~~~~~ 94 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN-CETGITA------TPCGVCDN-CREIEQGRF 94 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH-CTTCSCS------SCCSCSHH-HHHHHTTCC
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCCCCC------CCCcccHH-HHHHhccCC
Confidence 368999999999999987653 35889999999999999999998872 1111100 00000000 011111000
Q ss_pred CCcccc--cCCChhhhHHHHHHHh-----cCCcEEEEEccCCCc--cccccccccCCCCCCCcEEEEEcCChhhhc-c-c
Q 042817 236 MFSESW--KNKSPVEKSCAIFKIL-----SNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVFTTRYKEVCG-K-M 304 (922)
Q Consensus 236 ~~~~~~--~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~~~v~~-~-~ 304 (922)
...-.. ...........+.+.+ .+++.+||+||++.. ..+..+...+.....+..+|+||+...... . .
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~ 174 (250)
T 1njg_A 95 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 174 (250)
T ss_dssp SSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHH
T ss_pred cceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHH
Confidence 000000 0000111111222222 346899999999753 334444433333345778888887654321 1 1
Q ss_pred cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHHHhh
Q 042817 305 EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITIGRA 363 (922)
Q Consensus 305 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~ 363 (922)
.....+.+++++.++..+++...+...... --.+..+.|++.|+|.|..+..+...
T Consensus 175 ~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 175 SRCLQFHLKALDVEQIRHQLEHILNEEHIA---HEPRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHTTCC---BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhhhccCCCCCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 223578999999999999998876432211 12466789999999999988876543
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.12 E-value=1.2e-10 Score=115.11 Aligned_cols=123 Identities=20% Similarity=0.242 Sum_probs=103.5
Q ss_pred eEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeeeccCCccccch-hhccCCCCCEEeCCCC
Q 042817 541 LTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSSTGIRVLPE-ELKALKDLSYLNMERT 619 (922)
Q Consensus 541 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~l~~~ 619 (922)
++++++++.+..+|... .++|++|+|++| .++.+|..+.++++|++|++++|.|+.++. .+..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCC---CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 67899999999988763 368999999999 889999999999999999999999998875 5999999999999999
Q ss_pred ccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCceEEEEEe
Q 042817 620 SFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSVLSVCLE 681 (922)
Q Consensus 620 ~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~ 681 (922)
. +..+|...+.++++|++|++++|.... .....+..+++|+.|++..+
T Consensus 89 ~-l~~i~~~~f~~l~~L~~L~L~~N~l~~-------------~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 89 R-LRCIPPRTFDGLKSLRLLSLHGNDISV-------------VPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp C-CCBCCTTTTTTCTTCCEEECCSSCCCB-------------CCTTTTTTCTTCCEEECCSS
T ss_pred c-cCEeCHHHhCCCCCCCEEECCCCCCCe-------------eChhhhhcCccccEEEeCCC
Confidence 7 677877679999999999999987321 12234567788888887644
No 142
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.12 E-value=6.7e-11 Score=141.75 Aligned_cols=108 Identities=31% Similarity=0.350 Sum_probs=76.2
Q ss_pred cCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeeeccCCccccchhhccCCCCCEE
Q 042817 535 ATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSSTGIRVLPEELKALKDLSYL 614 (922)
Q Consensus 535 ~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~l~~l~~L~~L 614 (922)
..+++|++|+|++|.+..++...+ .+++|++|+|++| .++.+|..+++|++|++|+|++|.|+.+|..+++|++|++|
T Consensus 221 ~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp -CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred ccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 456677777777777766666533 6777777777777 66677777777777777777777777777777777777777
Q ss_pred eCCCCccccccChhhhCCCCCCCEEEeecCCc
Q 042817 615 NMERTSFVRRIPRQLISNFPLLRVLRMLDCGA 646 (922)
Q Consensus 615 ~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 646 (922)
+|++|. +..+|.. +++|++|++|++++|..
T Consensus 299 ~L~~N~-l~~lp~~-~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 299 YFFDNM-VTTLPWE-FGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp ECCSSC-CCCCCSS-TTSCTTCCCEECTTSCC
T ss_pred ECCCCC-CCccChh-hhcCCCccEEeCCCCcc
Confidence 777775 4667766 67777777777777653
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.10 E-value=1e-10 Score=115.70 Aligned_cols=123 Identities=17% Similarity=0.257 Sum_probs=102.0
Q ss_pred eEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCcc--ccCcccCCeeeeccCCcccc-chhhccCCCCCEEeCC
Q 042817 541 LTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPG--ISKLISLQYLNLSSTGIRVL-PEELKALKDLSYLNME 617 (922)
Q Consensus 541 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~--i~~L~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~l~ 617 (922)
++++++++.+..+|.... .+|++|++++| .+..+|.. ++.+++|++|+|++|.++.+ |..+..+++|++|+++
T Consensus 11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcCcCccCCC---CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 789999999999887633 38999999999 88888764 89999999999999999987 6789999999999999
Q ss_pred CCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCCCCceEEEEEe
Q 042817 618 RTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLNHLSVLSVCLE 681 (922)
Q Consensus 618 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~ 681 (922)
+|. +..+|...+.++++|++|++++|.... .....+..+++|+.|+++.+
T Consensus 87 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-------------~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 87 ENK-IKEISNKMFLGLHQLKTLNLYDNQISC-------------VMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp SCC-CCEECSSSSTTCTTCCEEECCSSCCCE-------------ECTTSSTTCTTCCEEECTTC
T ss_pred CCc-CCccCHHHhcCCCCCCEEECCCCcCCe-------------eCHHHhhcCCCCCEEEeCCC
Confidence 997 577776668999999999999987332 23345667778888877544
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.10 E-value=9.2e-12 Score=124.14 Aligned_cols=107 Identities=20% Similarity=0.197 Sum_probs=85.7
Q ss_pred ccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeeeccCCccccchhhccCCCCCE
Q 042817 534 PATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSSTGIRVLPEELKALKDLSY 613 (922)
Q Consensus 534 ~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~l~~l~~L~~ 613 (922)
...+++|++|++++|.+..++ .+.++++|++|++++| .+..+|..++.+++|++|++++|.++.+| .++.+++|++
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSE
T ss_pred HhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCE
Confidence 356788888888888887776 4788888888888888 77788887777888888888888888887 6888888888
Q ss_pred EeCCCCccccccCh-hhhCCCCCCCEEEeecCC
Q 042817 614 LNMERTSFVRRIPR-QLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 614 L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~ 645 (922)
|++++|. +..+|. ..+.++++|++|++.+|.
T Consensus 120 L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 120 LYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp EEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred EECCCCc-CCchhHHHHHhcCCCCCEEEecCCc
Confidence 8888886 455553 347888888888888876
No 145
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.09 E-value=7e-10 Score=112.74 Aligned_cols=184 Identities=12% Similarity=0.088 Sum_probs=116.0
Q ss_pred CcccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccC
Q 042817 157 PRIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDM 236 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 236 (922)
..++|++..++++.+++.....+.+.|+|++|+|||++|+.+++... ....-...+.++.+...+...+...+......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKIKEFART 95 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHHHHHHTS
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHHHHHhcc
Confidence 46899999999999999876555699999999999999999998762 11111233445544444433333222211110
Q ss_pred CcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCc--cccccccccCCCCCCCcEEEEEcCChhhh-cc-ccccceeec
Q 042817 237 FSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVFTTRYKEVC-GK-MEAHKKLRV 312 (922)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~~~v~-~~-~~~~~~~~l 312 (922)
.. .-..++.+||+||++.. ...+.+...+.....+.++|+||+..... .. ......+.+
T Consensus 96 ~~-----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~ 158 (226)
T 2chg_A 96 AP-----------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRF 158 (226)
T ss_dssp CC-----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred cC-----------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeec
Confidence 00 01257889999999764 22333333332334567888888765421 11 112247899
Q ss_pred CCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHHH
Q 042817 313 ECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITIG 361 (922)
Q Consensus 313 ~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 361 (922)
.+++.++..+++...+...... --.+..+.+++.++|.|..+..+.
T Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 159 KPVPKEAMKKRLLEICEKEGVK---ITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCC---BCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999998876432211 124567889999999998665443
No 146
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.06 E-value=1.1e-10 Score=139.94 Aligned_cols=151 Identities=20% Similarity=0.174 Sum_probs=96.3
Q ss_pred ccceEEeeecccccccccc-cCCCCceE-----EEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCC
Q 042817 516 KGVKRMSLMNNKIRNLSEP-ATCPHLLT-----LFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQ 589 (922)
Q Consensus 516 ~~l~~l~l~~~~~~~~~~~-~~~~~L~~-----L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 589 (922)
+.++++++.++.+...+.. .....|+. +++..|.+. +++..|..+++|++|+|++| .+..+|..+.++++|+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLT 250 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTS-CCSCCCGGGGGCCSCS
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCC
Confidence 4678888888877664322 12222222 223333333 45667899999999999999 7889999999999999
Q ss_pred eeeeccCCccccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhc
Q 042817 590 YLNLSSTGIRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLC 669 (922)
Q Consensus 590 ~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 669 (922)
+|+|++|.|+.+|..+++|++|++|+|++|. +..+|.. +++|++|++|++++|... ..+..+..
T Consensus 251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~--------------~lp~~~~~ 314 (727)
T 4b8c_D 251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAE-LGSCFQLKYFYFFDNMVT--------------TLPWEFGN 314 (727)
T ss_dssp CCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSS-GGGGTTCSEEECCSSCCC--------------CCCSSTTS
T ss_pred EEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChh-hcCCCCCCEEECCCCCCC--------------ccChhhhc
Confidence 9999999999999999999999999999998 5689987 899999999999998732 13344889
Q ss_pred CCCCceEEEEEechh
Q 042817 670 LNHLSVLSVCLESDQ 684 (922)
Q Consensus 670 L~~L~~L~l~~~~~~ 684 (922)
|++|+.|+++.+...
T Consensus 315 l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 315 LCNLQFLGVEGNPLE 329 (727)
T ss_dssp CTTCCCEECTTSCCC
T ss_pred CCCccEEeCCCCccC
Confidence 999999999876543
No 147
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.05 E-value=7.3e-10 Score=108.07 Aligned_cols=121 Identities=25% Similarity=0.435 Sum_probs=102.0
Q ss_pred CccccCCCccccccceEEeeecccccccccc--cCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCcc
Q 042817 504 VGLTEAPGIEKWKGVKRMSLMNNKIRNLSEP--ATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPG 581 (922)
Q Consensus 504 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~ 581 (922)
.++..+|. ...++++.|++++|.+..++.. ..+++|++|++++|.+..+++..|..+++|++|++++| .++.+|..
T Consensus 17 ~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~ 94 (177)
T 2o6r_A 17 KGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNG 94 (177)
T ss_dssp SCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred CCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHH
Confidence 34444442 3346899999999999987763 67899999999999999999988999999999999999 78887765
Q ss_pred -ccCcccCCeeeeccCCccccchh-hccCCCCCEEeCCCCccccccC
Q 042817 582 -ISKLISLQYLNLSSTGIRVLPEE-LKALKDLSYLNMERTSFVRRIP 626 (922)
Q Consensus 582 -i~~L~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~l~~~~~l~~lp 626 (922)
++.+++|++|++++|.++.+|.. +..+++|++|++++|......|
T Consensus 95 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 95 VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 68999999999999999999876 5889999999999998544433
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.02 E-value=7e-10 Score=107.61 Aligned_cols=100 Identities=24% Similarity=0.387 Sum_probs=58.1
Q ss_pred eEEEeccCcccccchhhhccCCCceEEEccCCCCCccc-CccccCcccCCeeeeccCCccccchh-hccCCCCCEEeCCC
Q 042817 541 LTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREF-PPGISKLISLQYLNLSSTGIRVLPEE-LKALKDLSYLNMER 618 (922)
Q Consensus 541 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~l~~ 618 (922)
+.++++++.+..+|... .++|++|+|++| .+..+ |..++++++|++|+|++|+|+.+|.. +.++++|++|++++
T Consensus 15 ~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI---PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCccCCCc---CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 45555555555555442 255666666666 44444 34556666666666666666666554 35666666666666
Q ss_pred CccccccChhhhCCCCCCCEEEeecCC
Q 042817 619 TSFVRRIPRQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 619 ~~~l~~lp~~~i~~l~~L~~L~l~~~~ 645 (922)
|. +..+|...+.++++|++|++.+|.
T Consensus 91 N~-l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 91 NH-LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SC-CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred Cc-cceeCHHHhccccCCCEEEeCCCC
Confidence 64 455555545666666666666654
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.99 E-value=9.5e-10 Score=106.28 Aligned_cols=101 Identities=23% Similarity=0.386 Sum_probs=60.9
Q ss_pred ceEEEeccCcccccchhhhccCCCceEEEccCCCCCccc-CccccCcccCCeeeeccCCccccchh-hccCCCCCEEeCC
Q 042817 540 LLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREF-PPGISKLISLQYLNLSSTGIRVLPEE-LKALKDLSYLNME 617 (922)
Q Consensus 540 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~l~ 617 (922)
.++++++++.++.+|... .++|++|+|++| .++.+ |..++.+++|++|+|++|+|+.+|.. +..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI---PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCccC---CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 345566666665555442 255666666666 55554 44466666666666666666666554 3566666666666
Q ss_pred CCccccccChhhhCCCCCCCEEEeecCC
Q 042817 618 RTSFVRRIPRQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 618 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 645 (922)
+|. +..+|...+.++++|++|++++|.
T Consensus 87 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 87 DNQ-LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCc-cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 665 455655556666666666666665
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.99 E-value=9.7e-10 Score=106.58 Aligned_cols=107 Identities=21% Similarity=0.379 Sum_probs=93.6
Q ss_pred ceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCcc-ccCcccCCeeeeccC
Q 042817 518 VKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPG-ISKLISLQYLNLSST 596 (922)
Q Consensus 518 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~L~~~ 596 (922)
.+.++++++.+..+|... .++|++|++++|.+..+++..|.++++|++|+|++| .++.+|.. ++++++|++|+|++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence 367899999998887643 489999999999999998888999999999999999 88888876 589999999999999
Q ss_pred Cccccchh-hccCCCCCEEeCCCCccccccCh
Q 042817 597 GIRVLPEE-LKALKDLSYLNMERTSFVRRIPR 627 (922)
Q Consensus 597 ~i~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~ 627 (922)
.|+.+|.. +..+++|++|++++|.. ...|.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~-~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPW-DCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCB-CTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCc-ccccc
Confidence 99999876 89999999999999973 44443
No 151
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.99 E-value=2e-11 Score=121.71 Aligned_cols=127 Identities=25% Similarity=0.351 Sum_probs=108.8
Q ss_pred CccccccceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCe
Q 042817 511 GIEKWKGVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQY 590 (922)
Q Consensus 511 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 590 (922)
.+..+++++.|++++|.+..++....+++|++|++++|.+..++. .+..+++|++|++++| .+..+| .++.+++|++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYN-QIASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSS-HHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSE
T ss_pred HHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccc-hhhcCCcCCEEECcCC-cCCcCC-ccccCCCCCE
Confidence 355677999999999999998877889999999999999988876 4777899999999999 888888 6999999999
Q ss_pred eeeccCCccccch--hhccCCCCCEEeCCCCccccccCh---------hhhCCCCCCCEEE
Q 042817 591 LNLSSTGIRVLPE--ELKALKDLSYLNMERTSFVRRIPR---------QLISNFPLLRVLR 640 (922)
Q Consensus 591 L~L~~~~i~~lp~--~l~~l~~L~~L~l~~~~~l~~lp~---------~~i~~l~~L~~L~ 640 (922)
|++++|.++.+|. .+..+++|++|++++|......|. ..+.++++|++|+
T Consensus 120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred EECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 9999999998875 789999999999999975433332 2467888899887
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.98 E-value=1.1e-09 Score=105.70 Aligned_cols=103 Identities=20% Similarity=0.391 Sum_probs=90.6
Q ss_pred cceEEeeecccccccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCcc-ccCcccCCeeeecc
Q 042817 517 GVKRMSLMNNKIRNLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPG-ISKLISLQYLNLSS 595 (922)
Q Consensus 517 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~L~~ 595 (922)
..+.++++++.+..+|... .++|++|++++|.++.+++..|.++++|++|+|++| .++.+|.. +..+++|++|+|++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCC
Confidence 3467899999999887643 488999999999999998888999999999999999 78888765 58999999999999
Q ss_pred CCccccchh-hccCCCCCEEeCCCCcc
Q 042817 596 TGIRVLPEE-LKALKDLSYLNMERTSF 621 (922)
Q Consensus 596 ~~i~~lp~~-l~~l~~L~~L~l~~~~~ 621 (922)
|.++.+|.. +..+++|++|++++|..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 999999875 88999999999999974
No 153
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.94 E-value=2e-09 Score=116.56 Aligned_cols=285 Identities=13% Similarity=0.072 Sum_probs=159.0
Q ss_pred ccccceEEeeecccc-cccccccC-CCCceEEEeccCccc--ccchhhhccCCCceEEEccCCCCCcccC-ccccC----
Q 042817 514 KWKGVKRMSLMNNKI-RNLSEPAT-CPHLLTLFLQNNRLS--NITANFFQFMPSLKVLNLSNNFSLREFP-PGISK---- 584 (922)
Q Consensus 514 ~~~~l~~l~l~~~~~-~~~~~~~~-~~~L~~L~l~~~~l~--~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~i~~---- 584 (922)
.+.+++.|.+.++-- .++..... +++|++|+|++|.+. ...... ++.++.+.+..+ .+| ..+.+
T Consensus 23 ~~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~----~I~~~aF~~~~~~ 95 (329)
T 3sb4_A 23 EANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMAN----FVPAYAFSNVVNG 95 (329)
T ss_dssp HHHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTT----EECTTTTEEEETT
T ss_pred hhCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcccc---cccccccccccc----ccCHHHhcccccc
Confidence 456788888876421 11212222 788899999988776 222222 223455555444 333 23555
Q ss_pred ----cccCCeeeeccCCccccch-hhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccC
Q 042817 585 ----LISLQYLNLSSTGIRVLPE-ELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNG 659 (922)
Q Consensus 585 ----L~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 659 (922)
+.+|+.|+|.+ .++.+++ .+..+++|+.|++.++. +..++...+..+.++..+......... ..
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~---------~~ 164 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYR---------FK 164 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHH---------TS
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecCcchhhhh---------cc
Confidence 88899998888 7888775 47888899999998886 467777777777666666544311000 00
Q ss_pred ccchHHHhhcCCCCc-eEEEEEechhHHHHHh-hcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcc
Q 042817 660 GEILIEELLCLNHLS-VLSVCLESDQALRKFL-SSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEK 737 (922)
Q Consensus 660 ~~~~~~~L~~L~~L~-~L~l~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~ 737 (922)
.......+..+.+|+ .+.+. ....++... .......++..+.+.+.-. ...... -...+++|++|++++|.+..
T Consensus 165 ~~i~~~~f~~~~~L~~~i~~~--~~~~l~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~-l~~~~~~L~~l~L~~n~i~~ 240 (329)
T 3sb4_A 165 NRWEHFAFIEGEPLETTIQVG--AMGKLEDEIMKAGLQPRDINFLTIEGKLD-NADFKL-IRDYMPNLVSLDISKTNATT 240 (329)
T ss_dssp TTTTTSCEEESCCCEEEEEEC--TTCCHHHHHHHTTCCGGGCSEEEEEECCC-HHHHHH-HHHHCTTCCEEECTTBCCCE
T ss_pred ccccccccccccccceeEEec--CCCcHHHHHhhcccCccccceEEEeeeec-HHHHHH-HHHhcCCCeEEECCCCCcce
Confidence 000001122333443 22222 111222211 1111233445555443210 000000 01237888888888887777
Q ss_pred eeecccccccCCCCCccCCcccEEEEecCCCCCCCc--hhhccCCCc-EEEEeccccchhhhcccccccccccCCCCCCc
Q 042817 738 LQIDCVGEIRKTPETSRFHNLHRVGIVNCKSLKDIT--WLIFAPNLR-ILEISYCFEMTEIISQAKVDEFGATAGNHHQI 814 (922)
Q Consensus 738 l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~-~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~ 814 (922)
++...+.. +++|+.|+|.+. ++.++ .+..+++|+ .|++.+ .++.|.. ..+.
T Consensus 241 I~~~aF~~---------~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~-------------~aF~ 294 (329)
T 3sb4_A 241 IPDFTFAQ---------KKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF-------------GAFM 294 (329)
T ss_dssp ECTTTTTT---------CTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECT-------------TTTT
T ss_pred ecHhhhhC---------CCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEch-------------hhhh
Confidence 76555543 778888888764 55554 367788888 888876 5666644 3566
Q ss_pred cCCccceeecCccccccccccC-CcCCCCccEEE
Q 042817 815 PFAKLESLKLARLPNLESVYWT-PLSFSHLKEIR 847 (922)
Q Consensus 815 ~fp~L~~L~L~~~~~L~~l~~~-~~~~p~L~~L~ 847 (922)
.+++|+.|.+.+ .+++.++.. ...+++|+.|+
T Consensus 295 ~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 295 GCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred CCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 778888888755 356666543 23355666554
No 154
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.90 E-value=5.1e-09 Score=113.34 Aligned_cols=262 Identities=13% Similarity=0.132 Sum_probs=168.5
Q ss_pred cccceEEeeecccccccccc-cCCCCceEEEeccCcccccchhhhcc--------CCCceEEEccCCCCCcccCc-cccC
Q 042817 515 WKGVKRMSLMNNKIRNLSEP-ATCPHLLTLFLQNNRLSNITANFFQF--------MPSLKVLNLSNNFSLREFPP-GISK 584 (922)
Q Consensus 515 ~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~--------l~~L~~L~L~~~~~l~~lp~-~i~~ 584 (922)
+++++.|++++|.+..+... ..++.++.+.+..+ .++...|.+ +++|+.|+|.+ .++.+++ .|.+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTT
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhc
Confidence 56899999999998832221 22333556666666 567777888 99999999988 4666664 5889
Q ss_pred cccCCeeeeccCCccccch-hhccCCCCCEEeCCCCc---cccccChhhhCCCCCCC-EEEeecCCcccccccCcccccC
Q 042817 585 LISLQYLNLSSTGIRVLPE-ELKALKDLSYLNMERTS---FVRRIPRQLISNFPLLR-VLRMLDCGALERAEHGSVLFNG 659 (922)
Q Consensus 585 L~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~l~~~~---~l~~lp~~~i~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~ 659 (922)
|.+|+.|++++|.+..++. .+..+.++..+...... ....+....+.++.+|+ .+.+.....+.
T Consensus 123 ~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~----------- 191 (329)
T 3sb4_A 123 CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLE----------- 191 (329)
T ss_dssp CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHH-----------
T ss_pred CcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHH-----------
Confidence 9999999999999887765 46666677766665521 12223333345556666 44444333111
Q ss_pred ccchHHHhhcCCCCceEEEEEechh-HHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcce
Q 042817 660 GEILIEELLCLNHLSVLSVCLESDQ-ALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKL 738 (922)
Q Consensus 660 ~~~~~~~L~~L~~L~~L~l~~~~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l 738 (922)
......-....++..+.+...-.. ....+. ..+++|+.+++.++. ...+..-.+.+|++|++|.+.++ +..+
T Consensus 192 -~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~---~~~~~L~~l~L~~n~--i~~I~~~aF~~~~~L~~l~l~~n-i~~I 264 (329)
T 3sb4_A 192 -DEIMKAGLQPRDINFLTIEGKLDNADFKLIR---DYMPNLVSLDISKTN--ATTIPDFTFAQKKYLLKIKLPHN-LKTI 264 (329)
T ss_dssp -HHHHHTTCCGGGCSEEEEEECCCHHHHHHHH---HHCTTCCEEECTTBC--CCEECTTTTTTCTTCCEEECCTT-CCEE
T ss_pred -HHHhhcccCccccceEEEeeeecHHHHHHHH---HhcCCCeEEECCCCC--cceecHhhhhCCCCCCEEECCcc-ccee
Confidence 001111123455666666543221 122211 235789999998764 22334445889999999999887 5556
Q ss_pred eecccccccCCCCCccCCccc-EEEEecCCCCCCCc--hhhccCCCcEEEEeccccchhhhcccccccccccCCCCCCcc
Q 042817 739 QIDCVGEIRKTPETSRFHNLH-RVGIVNCKSLKDIT--WLIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIP 815 (922)
Q Consensus 739 ~~~~~~~~~~~~~~~~l~~L~-~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~ 815 (922)
+...+.. +++|+ .|.+.+ .++.++ .+..+++|+.|++++ +.++.+.. ..+..
T Consensus 265 ~~~aF~~---------~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~-n~i~~I~~-------------~aF~~ 319 (329)
T 3sb4_A 265 GQRVFSN---------CGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG-DKITTLGD-------------ELFGN 319 (329)
T ss_dssp CTTTTTT---------CTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS-SCCCEECT-------------TTTCT
T ss_pred hHHHhhC---------ChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC-CccCccch-------------hhhcC
Confidence 5555543 88899 999987 566664 477899999999976 46777755 35566
Q ss_pred CCccceeec
Q 042817 816 FAKLESLKL 824 (922)
Q Consensus 816 fp~L~~L~L 824 (922)
+++|+.+..
T Consensus 320 ~~~L~~ly~ 328 (329)
T 3sb4_A 320 GVPSKLIYK 328 (329)
T ss_dssp TCCCCEEEC
T ss_pred Ccchhhhcc
Confidence 778887753
No 155
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.88 E-value=4.3e-09 Score=113.66 Aligned_cols=183 Identities=16% Similarity=0.160 Sum_probs=113.7
Q ss_pred CcccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCC-ceEEEEEeCCCCCHHHHHHHHHhhcc
Q 042817 157 PRIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDF-DIVIWVVVSKDLNLEKVQEDIGKKID 235 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (922)
..++|++..++.+.+++..+..+.+.|+|++|+||||+|+.+++... ...+ ...++++.+...+...+. ++++.+.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~ 97 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL--GRSYADGVLELNASDDRGIDVVR-NQIKHFA 97 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH--GGGHHHHEEEECTTSCCSHHHHH-THHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc--CCcccCCEEEecCccccChHHHH-HHHHHHH
Confidence 46899999999999999876655599999999999999999998861 1111 124444444333322221 1111111
Q ss_pred CCcccccCCChhhhHHHHHHHh-cCCcEEEEEccCCCc--cccccccccCCCCCCCcEEEEEcCChhh-hcc-cccccee
Q 042817 236 MFSESWKNKSPVEKSCAIFKIL-SNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVFTTRYKEV-CGK-MEAHKKL 310 (922)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~~~v-~~~-~~~~~~~ 310 (922)
... ..+ .+++.++|+||++.. ...+.+...+.....++++|+||+...- ... ......+
T Consensus 98 ~~~----------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i 161 (323)
T 1sxj_B 98 QKK----------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAIL 161 (323)
T ss_dssp HBC----------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred hcc----------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEE
Confidence 000 001 346899999999763 2333443333233456788888876432 111 1223478
Q ss_pred ecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhH-HHHHH
Q 042817 311 RVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLA-IITIG 361 (922)
Q Consensus 311 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa-i~~~g 361 (922)
.+.+++.++..+++...+...... --.+....|++.|+|.|.. +..+.
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 162 RYSKLSDEDVLKRLLQIIKLEDVK---YTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTCC---BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999998766422211 1245678899999999954 44443
No 156
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.84 E-value=1e-07 Score=102.85 Aligned_cols=271 Identities=14% Similarity=0.076 Sum_probs=140.6
Q ss_pred CcccchhhHHHHHHHHhcc-----CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHH
Q 042817 157 PRIIGQESIFDDAWRCMIE-----EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIG 231 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 231 (922)
..++|++..++++...+.. .....+.|+|++|+|||++|+++++.. ... .++++.+......++...+.
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~---~~~---~~~~~~~~~~~~~~l~~~l~ 85 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---GVN---LRVTSGPAIEKPGDLAAILA 85 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH---TCC---EEEECTTTCCSHHHHHHHHT
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh---CCC---EEEEeccccCChHHHHHHHH
Confidence 4689999999888887752 234678899999999999999999886 222 24454443333333222211
Q ss_pred hhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCcc--ccccccccCC--------C----------CCCCcEE
Q 042817 232 KKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPV--DLTKVGVPIP--------N----------STNASKV 291 (922)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~~~--------~----------~~~gs~I 291 (922)
.. ..++.+|+||++.... ....+...+. . ...+.++
T Consensus 86 ~~------------------------~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 86 NS------------------------LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp TT------------------------CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred Hh------------------------ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 10 1245577777776531 1111100000 0 0123456
Q ss_pred EEEcCChhh-hccc-c-ccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHHHhhhcc--
Q 042817 292 VFTTRYKEV-CGKM-E-AHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITIGRAMSC-- 366 (922)
Q Consensus 292 ivTtR~~~v-~~~~-~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~-- 366 (922)
|.||..... ...+ . ....+.+.+++.+|..+++...+...... --.+....+++.++|.|-.+..+...+..
T Consensus 142 i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 142 IGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR---ITEEAALEIGRRSRGTMRVAKRLFRRVRDFA 218 (324)
T ss_dssp EEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC---CCHHHHHHHHHHSCSCHHHHHHHHHHHTTTS
T ss_pred EEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 666664432 1111 1 13578999999999999998876543211 22467788999999999887765543321
Q ss_pred ----C--CCHHHHHHHHHHHhccCCCCCCcc-chhhhhhhhcCCCCCchhhhhhhhcccCCCCCccCHHHHHH----HHh
Q 042817 367 ----K--NKLEEWKHAVNVLKKSSSKFPGMD-AMYPHLKFSYDRLPDNKIRSCFLYCSLFPEDYKISKEDLID----CWI 435 (922)
Q Consensus 367 ----~--~~~~~w~~~~~~l~~~~~~~~~~~-~~~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~----~W~ 435 (922)
. -+.+....+.+.+..........+ .+...+.-.|..=+. ....+-..++ +++..+.+ +-+
T Consensus 219 ~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~-~~~~~a~~lg-------i~~~tl~~~l~~~~i 290 (324)
T 1hqc_A 219 QVAGEEVITRERALEALAALGLDELGLEKRDREILEVLILRFGGGPV-GLATLATALS-------EDPGTLEEVHEPYLI 290 (324)
T ss_dssp TTTSCSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSCSSCC-CHHHHHHHTT-------SCHHHHHHHTHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHhcCCCc-hHHHHHHHhC-------CCHHHHHHHHhHHHH
Confidence 1 233444444443322111110000 111111112222111 1222222222 23332222 344
Q ss_pred hcCCccccccchhhHhhHHHHHH-HHHHhccccc
Q 042817 436 GEEFFDEEHNGIGARNEGYAIIG-DLIRTCLLEE 468 (922)
Q Consensus 436 a~g~i~~~~~~~~~~~~~~~~~~-~L~~~sll~~ 468 (922)
..|++.....+....+.|..+++ ++.++++||+
T Consensus 291 ~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 291 RQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 56777655556667778888887 7778887764
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.75 E-value=2.3e-07 Score=102.62 Aligned_cols=99 Identities=16% Similarity=0.207 Sum_probs=69.4
Q ss_pred CceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccC-ccccCcccCCeeeeccCCccccchhhccCCCCCEEeCC
Q 042817 539 HLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFP-PGISKLISLQYLNLSSTGIRVLPEELKALKDLSYLNME 617 (922)
Q Consensus 539 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~ 617 (922)
+|+.+.+..+ +..+....|.++ +|+.+.+.+ .++.++ ..+.++.+|+.+++.+|+++.+|...-...+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeC
Confidence 5777777655 666776667764 577777775 355544 45777788888888877777777654446778888877
Q ss_pred CCccccccChhhhCCCCCCCEEEeec
Q 042817 618 RTSFVRRIPRQLISNFPLLRVLRMLD 643 (922)
Q Consensus 618 ~~~~l~~lp~~~i~~l~~L~~L~l~~ 643 (922)
.+ +..++...+.++++|+.+.+..
T Consensus 212 ~~--l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 212 VT--LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp TT--CCEECTTTTTTCTTCCCEECCT
T ss_pred Cc--hheehhhHhhCCCCCCEEecCC
Confidence 54 5677777777777787777754
No 158
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.72 E-value=2.6e-08 Score=107.67 Aligned_cols=178 Identities=14% Similarity=0.149 Sum_probs=112.1
Q ss_pred CcccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCC-ceEEEEEeCCCCCHHHHHHHHHhhcc
Q 042817 157 PRIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDF-DIVIWVVVSKDLNLEKVQEDIGKKID 235 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (922)
..++|++..++.+..++..+..+.+.|+|++|+||||+|+.+++... ...+ ...+.++.+.......+.
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~~-------- 94 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF--GENWRHNFLELNASDERGINVIR-------- 94 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH--GGGHHHHEEEEETTCHHHHHTTH--------
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc--CCcccCceEEeeccccCchHHHH--------
Confidence 36899999999999999877665699999999999999999998861 1111 123333332211111111
Q ss_pred CCcccccCCChhhhHHHHHHH-----h-cCCcEEEEEccCCCc--cccccccccCCCCCCCcEEEEEcCChhhh-ccc-c
Q 042817 236 MFSESWKNKSPVEKSCAIFKI-----L-SNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVFTTRYKEVC-GKM-E 305 (922)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~-----l-~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~~~v~-~~~-~ 305 (922)
..+.+. + .+++.++|+||++.. .....+...+.....++++|+||....-. ..+ .
T Consensus 95 ---------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 159 (327)
T 1iqp_A 95 ---------------EKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 159 (327)
T ss_dssp ---------------HHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred ---------------HHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHh
Confidence 111111 1 256889999999764 23333333332334567888888765321 111 1
Q ss_pred ccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHHHh
Q 042817 306 AHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITIGR 362 (922)
Q Consensus 306 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~ 362 (922)
....+.+.+++.++..+++...+...... --.+....|++.++|.|..+..+..
T Consensus 160 r~~~~~~~~l~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 160 RCAIFRFRPLRDEDIAKRLRYIAENEGLE---LTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHTTTCE---ECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCcEEEecCCCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 22478999999999999998876433211 1245678899999999986655443
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.63 E-value=8.5e-08 Score=104.57 Aligned_cols=99 Identities=17% Similarity=0.257 Sum_probs=68.6
Q ss_pred EEEeccC-cccccchhhhccCCCceEEEccC-CCCCcccC-ccccCcccCCeeeeccCCccccch-hhccCCCCCEEeCC
Q 042817 542 TLFLQNN-RLSNITANFFQFMPSLKVLNLSN-NFSLREFP-PGISKLISLQYLNLSSTGIRVLPE-ELKALKDLSYLNME 617 (922)
Q Consensus 542 ~L~l~~~-~l~~~~~~~~~~l~~L~~L~L~~-~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~l~ 617 (922)
.++++++ .+..+|. +..+++|++|+|++ | .+..+| ..|++|.+|++|+|++|.|+.+|. .+.+|++|++|+|+
T Consensus 12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH--LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCTTTTT--SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCCccCC--CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 3466665 6766666 67777777777775 5 666666 457777777777777777776654 46777777777777
Q ss_pred CCccccccChhhhCCCCCCCEEEeecCC
Q 042817 618 RTSFVRRIPRQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 618 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 645 (922)
+|. +..+|...+..++ |+.|++.+|.
T Consensus 89 ~N~-l~~~~~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 89 FNA-LESLSWKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp SSC-CSCCCSTTTCSCC-CCEEECCSSC
T ss_pred CCc-cceeCHHHcccCC-ceEEEeeCCC
Confidence 776 5667766555555 7777777765
No 160
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.60 E-value=7.3e-07 Score=98.56 Aligned_cols=119 Identities=11% Similarity=0.273 Sum_probs=94.5
Q ss_pred cceEEeeecccccccccc--cCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeeeec
Q 042817 517 GVKRMSLMNNKIRNLSEP--ATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLS 594 (922)
Q Consensus 517 ~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~ 594 (922)
+++.+.+..+ +..+... ..| +|+.+.+.. .+..+....|.++++|+.+++.+| .+..+|...-...+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEeC
Confidence 5777777654 5555443 343 699999986 677888888999999999999998 888888765557899999998
Q ss_pred cCCccccch-hhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeec
Q 042817 595 STGIRVLPE-ELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLD 643 (922)
Q Consensus 595 ~~~i~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~ 643 (922)
.+ ++.++. .+.++++|+.+++..+ +..++...+.+ .+|+.+.+..
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~ 257 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPN 257 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEET
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCC
Confidence 54 777764 5888999999999875 67888887877 7899988854
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.59 E-value=8.6e-08 Score=104.51 Aligned_cols=101 Identities=18% Similarity=0.225 Sum_probs=86.6
Q ss_pred EEeeecc-cccccccccCCCCceEEEecc-CcccccchhhhccCCCceEEEccCCCCCcccCc-cccCcccCCeeeeccC
Q 042817 520 RMSLMNN-KIRNLSEPATCPHLLTLFLQN-NRLSNITANFFQFMPSLKVLNLSNNFSLREFPP-GISKLISLQYLNLSST 596 (922)
Q Consensus 520 ~l~l~~~-~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~ 596 (922)
.++.+++ .+..+|....+++|+.|+|++ |.+..+++..|.++++|++|+|++| .+..+|+ .|++|++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC
Confidence 4567776 788888877788999999996 9999999888999999999999999 7777654 6899999999999999
Q ss_pred CccccchhhccCCCCCEEeCCCCcc
Q 042817 597 GIRVLPEELKALKDLSYLNMERTSF 621 (922)
Q Consensus 597 ~i~~lp~~l~~l~~L~~L~l~~~~~ 621 (922)
.|+.+|..+.....|++|++.+|..
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCc
Confidence 9999987655544599999999874
No 162
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.58 E-value=3.9e-07 Score=95.84 Aligned_cols=167 Identities=11% Similarity=0.060 Sum_probs=104.4
Q ss_pred cccchhhHHHHHHHHhcc----CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccC-----CCceEEEEEeCCCCCHHHHHH
Q 042817 158 RIIGQESIFDDAWRCMIE----EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERH-----DFDIVIWVVVSKDLNLEKVQE 228 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----~F~~~~wv~~s~~~~~~~~~~ 228 (922)
.+.|||++++++...|.. +....+.|+|++|+|||++|++|++....... .| ..++|++....+...+..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHHHH
Confidence 478999999999887753 46678899999999999999999999832111 12 467788778888889999
Q ss_pred HHHhhccCCcccccCCChhhhHHHHHHHh---cCCcEEEEEccCCCccccccccccC--CCCCC-CcEEEEEcCChhhh-
Q 042817 229 DIGKKIDMFSESWKNKSPVEKSCAIFKIL---SNKKFVLLLDDMWEPVDLTKVGVPI--PNSTN-ASKVVFTTRYKEVC- 301 (922)
Q Consensus 229 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~~~~l~~~~--~~~~~-gs~IivTtR~~~v~- 301 (922)
.|++++..... ......+....+.+.+ ++++++++||+++...+-+-+...+ +.... ..-||.++...+..
T Consensus 100 ~I~~~L~g~~~--~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~ 177 (318)
T 3te6_A 100 KIWFAISKENL--CGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIR 177 (318)
T ss_dssp HHHHHHSCCC----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCH
T ss_pred HHHHHhcCCCC--CchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccch
Confidence 99999854321 1111222233333333 4578999999997653211111111 11111 12234444433221
Q ss_pred --------ccccccceeecCCCCHHHHHHHHHHhh
Q 042817 302 --------GKMEAHKKLRVECLTADDAWMLFKVKV 328 (922)
Q Consensus 302 --------~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 328 (922)
..++ ...+.+.+++.+|-.+++..++
T Consensus 178 ~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 178 EQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred hhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 1111 2468999999999999998876
No 163
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.55 E-value=3.2e-07 Score=98.62 Aligned_cols=179 Identities=11% Similarity=0.108 Sum_probs=111.4
Q ss_pred CcccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCc-eEEEEEeCCCCCHHHHHHHHHhhcc
Q 042817 157 PRIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFD-IVIWVVVSKDLNLEKVQEDIGKKID 235 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (922)
..++|++..++.+.+++..+..+.+.|+|++|+|||++|+.+++... ...+. ..+.++.+......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~----------- 83 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF--GENWRDNFIEMNASDERGID----------- 83 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH--TTCHHHHCEEEETTSTTCTT-----------
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc--CCcccCCeEEEeCccccChH-----------
Confidence 35899999999999998776655589999999999999999998851 11211 12333433221110
Q ss_pred CCcccccCCChhhhHHHHHHH--h-cCCcEEEEEccCCCc--cccccccccCCCCCCCcEEEEEcCChhh-hcc-ccccc
Q 042817 236 MFSESWKNKSPVEKSCAIFKI--L-SNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVFTTRYKEV-CGK-MEAHK 308 (922)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~~~v-~~~-~~~~~ 308 (922)
...+........ + .+++.++|+|+++.. .....+...+.....+.++|+||....- ... .....
T Consensus 84 ---------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 154 (319)
T 2chq_A 84 ---------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (319)
T ss_dssp ---------TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCE
T ss_pred ---------HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCe
Confidence 111111111111 1 256889999999764 2234444444444456778888765442 111 12234
Q ss_pred eeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHH
Q 042817 309 KLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITI 360 (922)
Q Consensus 309 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 360 (922)
.+.+.+++.++..+++...+...... --.+....+++.++|.+..+...
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~---i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 155 VFRFKPVPKEAMKKRLLEICEKEGVK---ITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTCCC---BCHHHHHHHHHTTTTCHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 78999999999999998776443311 12456778889999998765543
No 164
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.48 E-value=8.2e-07 Score=97.76 Aligned_cols=193 Identities=13% Similarity=0.161 Sum_probs=109.6
Q ss_pred CcccchhhHHHHHHHHhccCC-eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhcc
Q 042817 157 PRIIGQESIFDDAWRCMIEEQ-VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (922)
..++|++..++.+...+..+. .+.+.|+|++|+||||+|+.+++.. .....+. ...+........+.....
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l-~~~~~~~-------~~~~~~~~~~~~~~~~~~ 87 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL-NCETGIT-------ATPCGVCDNCREIEQGRF 87 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHH-SCTTCSC-------SSCCSSSHHHHHHHTSCC
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHh-CCCCCCC-------CCCCcccHHHHHHhccCC
Confidence 358999999999999987654 3578899999999999999999887 2111110 000010011111111000
Q ss_pred CCc---ccccCCChhhhHHHHHHHh-----cCCcEEEEEccCCCc--cccccccccCCCCCCCcEEEEEcCChhh-hcc-
Q 042817 236 MFS---ESWKNKSPVEKSCAIFKIL-----SNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVFTTRYKEV-CGK- 303 (922)
Q Consensus 236 ~~~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~~~v-~~~- 303 (922)
... +.......++ ...+.+.+ .+++.++|+||++.. .....+...+.....+..+|++|....- ...
T Consensus 88 ~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l 166 (373)
T 1jr3_A 88 VDLIEIDAASRTKVED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (373)
T ss_dssp SSCEEEETTCSCCSSC-HHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHH
T ss_pred CceEEecccccCCHHH-HHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHH
Confidence 000 0000011111 22233333 346789999999753 2233333333222345677777764432 111
Q ss_pred ccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHHH
Q 042817 304 MEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITIG 361 (922)
Q Consensus 304 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 361 (922)
......+.+.+++.++..+++...+...... --.+....|++.++|.|..+..+.
T Consensus 167 ~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~---~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHIA---HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTCC---BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HhheeEeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 1223578999999999999998765322111 124567789999999998776554
No 165
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.47 E-value=5.5e-08 Score=106.51 Aligned_cols=126 Identities=17% Similarity=0.178 Sum_probs=58.4
Q ss_pred cceEEeeeccccccccc-----c--cCCCCceEEEeccCcccccch-hhhccCCCceEEEccCCCCCccc-Cccc-----
Q 042817 517 GVKRMSLMNNKIRNLSE-----P--ATCPHLLTLFLQNNRLSNITA-NFFQFMPSLKVLNLSNNFSLREF-PPGI----- 582 (922)
Q Consensus 517 ~l~~l~l~~~~~~~~~~-----~--~~~~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~L~~~~~l~~l-p~~i----- 582 (922)
.++.|++++|.+..... . ..+++|+.|++++|.+..... .....+++|+.|+|++| .++.. ...+
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLL 151 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHH
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHH
Confidence 45566666665543211 0 123456666666665433221 12223445666666665 33321 1111
Q ss_pred cCcccCCeeeeccCCccc-----cchhhccCCCCCEEeCCCCccccc-----cChhhhCCCCCCCEEEeecCC
Q 042817 583 SKLISLQYLNLSSTGIRV-----LPEELKALKDLSYLNMERTSFVRR-----IPRQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 583 ~~L~~L~~L~L~~~~i~~-----lp~~l~~l~~L~~L~l~~~~~l~~-----lp~~~i~~l~~L~~L~l~~~~ 645 (922)
....+|++|+|++|.|+. ++..+..+++|++|++++|.. .. ++.. +...++|++|++++|.
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l-~~~g~~~L~~~-L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGL-GDEGLELLAAQ-LDRNRQLQELNVAYNG 222 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSC-HHHHHHHHHHH-GGGCSCCCEEECCSSC
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCC-CcHHHHHHHHH-HhcCCCcCeEECCCCC
Confidence 123456666666665542 344445555566666665542 22 1111 3444555555555554
No 166
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.43 E-value=1.4e-07 Score=92.87 Aligned_cols=46 Identities=22% Similarity=0.379 Sum_probs=41.3
Q ss_pred CcccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 157 PRIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..++||+.+++++.+.+.....+.+.|+|++|+|||++|+++++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999987666778899999999999999999886
No 167
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.36 E-value=1.7e-07 Score=102.63 Aligned_cols=127 Identities=21% Similarity=0.236 Sum_probs=98.4
Q ss_pred ccceEEeeeccccccc--ccc-cCCCCceEEEeccCcccccchhhh-----ccCCCceEEEccCCCCCcc-----cCccc
Q 042817 516 KGVKRMSLMNNKIRNL--SEP-ATCPHLLTLFLQNNRLSNITANFF-----QFMPSLKVLNLSNNFSLRE-----FPPGI 582 (922)
Q Consensus 516 ~~l~~l~l~~~~~~~~--~~~-~~~~~L~~L~l~~~~l~~~~~~~~-----~~l~~L~~L~L~~~~~l~~-----lp~~i 582 (922)
.+++.|++++|.+... ... ..+++|+.|++++|.+.......+ ...++|++|+|++| .++. ++..+
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L 179 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGL 179 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHH
Confidence 4799999999987642 111 346789999999998876554444 34688999999999 6654 56667
Q ss_pred cCcccCCeeeeccCCcc-----ccchhhccCCCCCEEeCCCCccccc-----cChhhhCCCCCCCEEEeecCC
Q 042817 583 SKLISLQYLNLSSTGIR-----VLPEELKALKDLSYLNMERTSFVRR-----IPRQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 583 ~~L~~L~~L~L~~~~i~-----~lp~~l~~l~~L~~L~l~~~~~l~~-----lp~~~i~~l~~L~~L~l~~~~ 645 (922)
..+++|++|+|++|.|+ .++..+...++|++|++++|.. .. ++.. +...++|++|++++|.
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i-~~~g~~~l~~~-L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA-GDTAALALARA-AREHPSLELLHLYFNE 250 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC-CHHHHHHHHHH-HHHCSSCCEEECTTSS
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC-CHHHHHHHHHH-HHhCCCCCEEeccCCC
Confidence 78899999999999887 3567788889999999999974 43 2222 4567899999999997
No 168
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.32 E-value=1.3e-06 Score=92.18 Aligned_cols=175 Identities=16% Similarity=0.156 Sum_probs=100.9
Q ss_pred CcccchhhHHHHHHHHhcc-------------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCH
Q 042817 157 PRIIGQESIFDDAWRCMIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNL 223 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 223 (922)
..++|.+..++++.+.+.. ...+-+.|+|++|+|||++|+++++.. ...| +.+..+.-..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~~~---~~v~~~~~~~- 89 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NATF---IRVVGSELVK- 89 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---TCEE---EEEEGGGGCC-
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEehHHHHH-
Confidence 4689999999999887742 244578999999999999999999886 2222 2333221100
Q ss_pred HHHHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCcc----------------ccccccccCC--CC
Q 042817 224 EKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPV----------------DLTKVGVPIP--NS 285 (922)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------------~~~~l~~~~~--~~ 285 (922)
. +...........+......++.+|+|||++... .+..+...+. ..
T Consensus 90 -------------~---~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 90 -------------K---FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp -------------C---STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred -------------h---ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 0 001111111222223334567899999996421 1111111111 12
Q ss_pred CCCcEEEEEcCChhhhc-----cccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCc-hhHHH
Q 042817 286 TNASKVVFTTRYKEVCG-----KMEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGL-PLAII 358 (922)
Q Consensus 286 ~~gs~IivTtR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~ 358 (922)
..+..||.||...+... .......+.++..+.++..+++...+.......... ...+++.+.|. |-.+.
T Consensus 154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 154 RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELK 228 (285)
T ss_dssp SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHH
T ss_pred CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHH
Confidence 33567888887654322 111234789999999999999988875543222222 45666777664 43333
No 169
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.31 E-value=5.2e-07 Score=92.50 Aligned_cols=172 Identities=8% Similarity=0.049 Sum_probs=100.3
Q ss_pred Ccccch---hhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhh
Q 042817 157 PRIIGQ---ESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKK 233 (922)
Q Consensus 157 ~~~vGr---~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 233 (922)
..|+|. +..++.+..+...+..+.+.|+|++|+||||+|+.+++... . ....+.|++++...+ .
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~-~--~~~~~~~~~~~~~~~----------~ 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN-E--LERRSFYIPLGIHAS----------I 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH-H--TTCCEEEEEGGGGGG----------S
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH-H--cCCeEEEEEHHHHHH----------H
Confidence 356663 35566666666555567899999999999999999999872 1 223456666543110 0
Q ss_pred ccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCccc----cccccccCCC-CCCC-cEEEEEcCChhh-------
Q 042817 234 IDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPVD----LTKVGVPIPN-STNA-SKVVFTTRYKEV------- 300 (922)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----~~~l~~~~~~-~~~g-s~IivTtR~~~v------- 300 (922)
+ .+. .+.+ .++.+||+||++.... .+.+...+.. ...+ .++|+||+...-
T Consensus 95 ~------------~~~----~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~ 157 (242)
T 3bos_A 95 S------------TAL----LEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLP 157 (242)
T ss_dssp C------------GGG----GTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCH
T ss_pred H------------HHH----HHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhh
Confidence 0 000 0011 3456899999975421 1112111100 0112 247777764321
Q ss_pred --hccccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHHH
Q 042817 301 --CGKMEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITIG 361 (922)
Q Consensus 301 --~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 361 (922)
...+.....+.+.+++.++..+++...+..... .--.+....+++.++|.+-.+..+-
T Consensus 158 ~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 158 DLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL---QLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC---CCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 111112267899999999999999887642221 1225677889999999887665443
No 170
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.30 E-value=2.4e-06 Score=93.26 Aligned_cols=193 Identities=12% Similarity=0.141 Sum_probs=110.5
Q ss_pred CcccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhc-cCCCceEEEEEeCCCCCHHHHHHHHHhhcc
Q 042817 157 PRIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQE-RHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (922)
..++|++..++.+..++.......+.|+|++|+||||+|+.+++..... ...+ .++.++.+.......+...+.....
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS-RILELNASDERGISIVREKVKNFAR 115 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT-SEEEECSSSCCCHHHHTTHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc-ceEEEccccccchHHHHHHHHHHhh
Confidence 4689999999999999987654458999999999999999999885210 0111 2334444443333333222211111
Q ss_pred CCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCcc--ccccccccCCCCCCCcEEEEEcCChh-hhccc-cccceee
Q 042817 236 MFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPV--DLTKVGVPIPNSTNASKVVFTTRYKE-VCGKM-EAHKKLR 311 (922)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTtR~~~-v~~~~-~~~~~~~ 311 (922)
.... . .... .....-..++-+|++|+++... ....+...+.......++|++|.... +...+ .....+.
T Consensus 116 ~~~~---~-~~~~---~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~ 188 (353)
T 1sxj_D 116 LTVS---K-PSKH---DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFR 188 (353)
T ss_dssp SCCC---C-CCTT---HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEE
T ss_pred hccc---c-cchh---hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEE
Confidence 0000 0 0000 0001112356799999986532 22223222222234566777765443 21111 1224789
Q ss_pred cCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHH
Q 042817 312 VECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITI 360 (922)
Q Consensus 312 l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 360 (922)
+.+++.++....+...+...... --.+..+.|++.++|.|-.+..+
T Consensus 189 ~~~~~~~~~~~~l~~~~~~~~~~---i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 189 FKALDASNAIDRLRFISEQENVK---CDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTCC---CCHHHHHHHHHHTSSCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999998876433211 12567788999999999765544
No 171
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.26 E-value=5.9e-06 Score=94.59 Aligned_cols=187 Identities=12% Similarity=0.065 Sum_probs=107.3
Q ss_pred CcccchhhHHHHHHHHhcc-----------------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCC
Q 042817 157 PRIIGQESIFDDAWRCMIE-----------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSK 219 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~-----------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 219 (922)
..++|++..++++.+++.. +..+.+.|+|++|+||||+|+++++.. . + .++.++++.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l---~--~-~~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL---G--Y-DILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT---T--C-EEEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc---C--C-CEEEEeCCC
Confidence 4689999999999999864 134689999999999999999999886 1 2 244555555
Q ss_pred CCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHH--hcCCcEEEEEccCCCccc-----cccccccCCCCCCCcEEE
Q 042817 220 DLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKI--LSNKKFVLLLDDMWEPVD-----LTKVGVPIPNSTNASKVV 292 (922)
Q Consensus 220 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~--l~~kr~LlVlDdv~~~~~-----~~~l~~~~~~~~~gs~Ii 292 (922)
......+. ..+....... ..........+. ...++.+|++|+++.... +..+...+.. .+..||
T Consensus 113 ~~~~~~~~-~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iI 183 (516)
T 1sxj_A 113 VRSKTLLN-AGVKNALDNM------SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLI 183 (516)
T ss_dssp CCCHHHHH-HTGGGGTTBC------CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEE
T ss_pred cchHHHHH-HHHHHHhccc------cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEE
Confidence 54443332 2222211100 000000000001 235788999999975421 1222111111 123355
Q ss_pred EEcCChh---hhccccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCch-hHHHHHH
Q 042817 293 FTTRYKE---VCGKMEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLP-LAIITIG 361 (922)
Q Consensus 293 vTtR~~~---v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~g 361 (922)
+++.+.. +.........+.+++++.++..+.+...+.......+ .+....|++.++|.+ -++..+.
T Consensus 184 li~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~---~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 184 LICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD---PNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp EEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHTTTCHHHHHHHHT
T ss_pred EEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHH
Confidence 5544322 2222223457899999999999988776643221222 345778999999954 4555443
No 172
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.22 E-value=2.4e-05 Score=81.61 Aligned_cols=196 Identities=13% Similarity=0.106 Sum_probs=104.0
Q ss_pred CcccchhhHHHHHHH-------Hhc---cCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHH
Q 042817 157 PRIIGQESIFDDAWR-------CMI---EEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKV 226 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~-------~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~ 226 (922)
..++|....+++++. .+. ....+.+.|+|++|+|||++|+++++.. ...| +.++.+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~---~~i~~~~~------ 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPF---IKICSPDK------ 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSE---EEEECGGG------
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEeCHHH------
Confidence 356787777666655 232 2355788999999999999999999986 3332 22222210
Q ss_pred HHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCc-----------cc-cccccccCC---CCCCCcEE
Q 042817 227 QEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEP-----------VD-LTKVGVPIP---NSTNASKV 291 (922)
Q Consensus 227 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~-~~~l~~~~~---~~~~gs~I 291 (922)
..+.. ...........+......+..+|+|||++.. .. +..+...+. ..+....|
T Consensus 101 ------~~g~~----~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 101 ------MIGFS----ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp ------CTTCC----HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred ------hcCCc----hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 00000 0000011112222333467889999998642 00 111211121 12233456
Q ss_pred EEEcCChhhhcc---ccc-cceeecCCCCH-HHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCC------chhHHHHH
Q 042817 292 VFTTRYKEVCGK---MEA-HKKLRVECLTA-DDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGG------LPLAIITI 360 (922)
Q Consensus 292 ivTtR~~~v~~~---~~~-~~~~~l~~L~~-~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g------lPLai~~~ 360 (922)
|.||........ .+. ...+.+++++. ++-..++.... . -..+....|++.+.| +.-++..+
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~-~-------~~~~~~~~l~~~~~g~~~~g~ir~l~~~l 242 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG-N-------FKDKERTTIAQQVKGKKVWIGIKKLLMLI 242 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT-C-------SCHHHHHHHHHHHTTSEEEECHHHHHHHH
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC-C-------CCHHHHHHHHHHhcCCCccccHHHHHHHH
Confidence 777776644322 111 35688999988 66666665431 1 114567888888887 33444333
Q ss_pred HhhhccCCCHHHHHHHHHHHhcc
Q 042817 361 GRAMSCKNKLEEWKHAVNVLKKS 383 (922)
Q Consensus 361 g~~L~~~~~~~~w~~~~~~l~~~ 383 (922)
-.... ......++.+++.+...
T Consensus 243 ~~a~~-~~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 243 EMSLQ-MDPEYRVRKFLALLREE 264 (272)
T ss_dssp HHHTT-SCGGGHHHHHHHHHHHT
T ss_pred HHHhh-hchHHHHHHHHHHHHHc
Confidence 33222 23345666666655543
No 173
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.22 E-value=1e-05 Score=83.99 Aligned_cols=174 Identities=11% Similarity=0.099 Sum_probs=95.1
Q ss_pred CcccchhhHHHHHHHHhc---c---------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHH
Q 042817 157 PRIIGQESIFDDAWRCMI---E---------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLE 224 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 224 (922)
..++|.+..++++.+.+. . ...+-+.|+|++|+|||++|+++++.. ... .+.++.+.-.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~---~~~~~~~~~~~-- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVP---FLAMAGAEFVE-- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCC---EEEEETTTTSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---EEEechHHHHh--
Confidence 467999988777765542 1 123467899999999999999999987 333 23444433211
Q ss_pred HHHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCcc-------------c----cccccccCCC--C
Q 042817 225 KVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPV-------------D----LTKVGVPIPN--S 285 (922)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------------~----~~~l~~~~~~--~ 285 (922)
. +...........+.......+.+|+|||++... . +..+...+.. .
T Consensus 78 --------~-------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 78 --------V-------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp --------S-------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred --------h-------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 0 001111112222333334567999999997531 0 1112111111 1
Q ss_pred CCCcEEEEEcCChhhhc-cc----cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchh
Q 042817 286 TNASKVVFTTRYKEVCG-KM----EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPL 355 (922)
Q Consensus 286 ~~gs~IivTtR~~~v~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 355 (922)
..+..||.||....... .. .....+.++..+.++-.+++...+...... .........+++.+.|.+-
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~--~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT--QSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC--BTHHHHHHHHHHTCTTCCH
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC--cchhhHHHHHHHHCCCCCH
Confidence 23456777776544221 11 123567889999999999998766432211 1122234677787777653
No 174
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.19 E-value=4.8e-06 Score=93.02 Aligned_cols=180 Identities=14% Similarity=0.151 Sum_probs=103.6
Q ss_pred ccc-chhhH--HHHHHHHhccCC-eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhh
Q 042817 158 RII-GQESI--FDDAWRCMIEEQ-VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKK 233 (922)
Q Consensus 158 ~~v-Gr~~~--~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 233 (922)
.|+ |.... ...+.......+ ...+.|+|++|+||||||+++++.... ...-..+++++.. .+..++...
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~-~~~~~~v~~v~~~------~~~~~~~~~ 178 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQ-NEPDLRVMYITSE------KFLNDLVDS 178 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHH-HCCSSCEEEEEHH------HHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEeeHH------HHHHHHHHH
Confidence 355 64432 333444443333 568899999999999999999998721 1111234555543 233444433
Q ss_pred ccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCccc----cccccccCCC-CCCCcEEEEEcCChh---------
Q 042817 234 IDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPVD----LTKVGVPIPN-STNASKVVFTTRYKE--------- 299 (922)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----~~~l~~~~~~-~~~gs~IivTtR~~~--------- 299 (922)
+... . ...+.+.+..+.-+|+|||++.... -+.+...+.. ...|..||+||.+..
T Consensus 179 ~~~~-------~----~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~ 247 (440)
T 2z4s_A 179 MKEG-------K----LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_dssp HHTT-------C----HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHH
T ss_pred HHcc-------c----HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHH
Confidence 3211 1 1233444444677999999965421 1222222110 134677888887632
Q ss_pred hhccccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHH
Q 042817 300 VCGKMEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAII 358 (922)
Q Consensus 300 v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 358 (922)
+...+.....+.+++++.++-.+++...+.......+ .+....|++.++|.+-.+.
T Consensus 248 L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~---~e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 248 LVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELP---EEVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHCCSCHHHHH
T ss_pred HHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHH
Confidence 1222233457899999999999999887642221122 3456778889999886554
No 175
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.14 E-value=4.2e-06 Score=91.25 Aligned_cols=195 Identities=10% Similarity=0.084 Sum_probs=102.4
Q ss_pred CcccchhhHHHHHHHHh-ccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcc-C--CCce--------------------E
Q 042817 157 PRIIGQESIFDDAWRCM-IEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQER-H--DFDI--------------------V 212 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~--~F~~--------------------~ 212 (922)
..++|++..++.+.+++ ..+....+.|+|++|+||||+|+.++....... + .++. .
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYH 93 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSE
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccce
Confidence 45899999999999988 655444489999999999999999998641100 0 0111 0
Q ss_pred EEEEeCCCC-CHHHHHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCcc--ccccccccCCCCCCCc
Q 042817 213 IWVVVSKDL-NLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPV--DLTKVGVPIPNSTNAS 289 (922)
Q Consensus 213 ~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs 289 (922)
+.+..+... ......+++++.+.... ...... .+ ..+..++-++|+|++.... ....+...+.....+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~ 165 (354)
T 1sxj_E 94 LEITPSDMGNNDRIVIQELLKEVAQME------QVDFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNI 165 (354)
T ss_dssp EEECCC----CCHHHHHHHHHHHTTTT------C--------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTE
T ss_pred EEecHhhcCCcchHHHHHHHHHHHHhc------cccccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCC
Confidence 111111000 00001111111111000 000000 00 0023467799999997632 1222222221123456
Q ss_pred EEEEEcCChh-hhccc-cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHHH
Q 042817 290 KVVFTTRYKE-VCGKM-EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITIG 361 (922)
Q Consensus 290 ~IivTtR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 361 (922)
.+|++|.+.. +...+ .....+++.+++.++..+.+...+.......+ -.+....|++.++|.+-.+..+.
T Consensus 166 ~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 166 RLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE--TKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC--CSHHHHHHHHHHTTCHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC--cHHHHHHHHHHcCCCHHHHHHHH
Confidence 7777776543 22111 22357899999999999999877643221111 03567889999999986655443
No 176
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.12 E-value=3.8e-05 Score=85.59 Aligned_cols=174 Identities=14% Similarity=0.168 Sum_probs=102.5
Q ss_pred CcccchhhHH---HHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhh
Q 042817 157 PRIIGQESIF---DDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKK 233 (922)
Q Consensus 157 ~~~vGr~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 233 (922)
..++|.+..+ ..+...+..+..+.+.|+|++|+||||+|+.+++.. ...| +.++.. ......+...+
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~---~~~f---~~l~a~-~~~~~~ir~~~--- 95 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA---NADV---ERISAV-TSGVKEIREAI--- 95 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT---TCEE---EEEETT-TCCHHHHHHHH---
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh---CCCe---EEEEec-cCCHHHHHHHH---
Confidence 4689999888 677777877777889999999999999999999986 2332 122221 12222221111
Q ss_pred ccCCcccccCCChhhhHHHHH-HHhcCCcEEEEEccCCCc--cccccccccCCCCCCCcEEEE-EcCChh--hh-ccccc
Q 042817 234 IDMFSESWKNKSPVEKSCAIF-KILSNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVF-TTRYKE--VC-GKMEA 306 (922)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iiv-TtR~~~--v~-~~~~~ 306 (922)
.... ....+++.+|++|+++.. ...+.+...+.. + ...+|. ||.+.. +. .....
T Consensus 96 -----------------~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~aL~sR 156 (447)
T 3pvs_A 96 -----------------ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSALLSR 156 (447)
T ss_dssp -----------------HHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHHHHTT
T ss_pred -----------------HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHHHhCc
Confidence 1111 112467889999999764 233333333322 2 233443 555542 11 11122
Q ss_pred cceeecCCCCHHHHHHHHHHhhCCCCC----CCCCChhHHHHHHHHHhCCchhHHHH
Q 042817 307 HKKLRVECLTADDAWMLFKVKVGEDTI----DSHPEIPKHAQLVAKECGGLPLAIIT 359 (922)
Q Consensus 307 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~----~~~~~~~~~~~~i~~~c~glPLai~~ 359 (922)
...+.+.+++.++...++...+..... ....--.+....|++.++|.+-.+..
T Consensus 157 ~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln 213 (447)
T 3pvs_A 157 ARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALN 213 (447)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHH
T ss_pred eeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHH
Confidence 357899999999999999887643110 00112345677888889988765543
No 177
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.10 E-value=6.1e-06 Score=88.07 Aligned_cols=151 Identities=12% Similarity=0.130 Sum_probs=84.9
Q ss_pred cccchhhHHHHHHHHhc---------------cCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCC
Q 042817 158 RIIGQESIFDDAWRCMI---------------EEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLN 222 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~---------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~ 222 (922)
.++|.+..++++.+.+. ......+.|+|++|+|||++|+++++... ........-++.++.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~-~~~~~~~~~~~~~~~--- 107 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLH-RLGYVRKGHLVSVTR--- 107 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHH-HTTSSSSCCEEEECG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHH-hcCCcCCCcEEEEcH---
Confidence 57899988888876653 22344789999999999999999998872 222211111222221
Q ss_pred HHHHHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCc-----------cccccccccCCCCCCCcEE
Q 042817 223 LEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEP-----------VDLTKVGVPIPNSTNASKV 291 (922)
Q Consensus 223 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~I 291 (922)
..+.. .+...........+.. . +.-+|+||+++.. .....+...+.....+..|
T Consensus 108 ---------~~l~~---~~~g~~~~~~~~~~~~-~--~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~ 172 (309)
T 3syl_A 108 ---------DDLVG---QYIGHTAPKTKEVLKR-A--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVV 172 (309)
T ss_dssp ---------GGTCC---SSTTCHHHHHHHHHHH-H--TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEE
T ss_pred ---------HHhhh---hcccccHHHHHHHHHh-c--CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEE
Confidence 01100 0011111111111211 1 3459999999733 1122332223233445678
Q ss_pred EEEcCChhh----------hccccccceeecCCCCHHHHHHHHHHhhC
Q 042817 292 VFTTRYKEV----------CGKMEAHKKLRVECLTADDAWMLFKVKVG 329 (922)
Q Consensus 292 ivTtR~~~v----------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 329 (922)
|.||..... ... ....+.+++++.++-.+++...+.
T Consensus 173 i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 173 ILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHH
T ss_pred EEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHH
Confidence 888764322 111 236789999999999999987664
No 178
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.10 E-value=1.4e-06 Score=82.69 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=16.4
Q ss_pred ccceeecCcccccccccc-CCcCCCCccEEEecCCCCCCC
Q 042817 818 KLESLKLARLPNLESVYW-TPLSFSHLKEIRIFKCPRLWK 856 (922)
Q Consensus 818 ~L~~L~L~~~~~L~~l~~-~~~~~p~L~~L~i~~C~~L~~ 856 (922)
+|++|+|++|+++++-.. ....+|+|+.|++++||+++.
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 444444444444433111 111244555555555554443
No 179
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.10 E-value=1.3e-05 Score=88.83 Aligned_cols=121 Identities=12% Similarity=0.121 Sum_probs=65.6
Q ss_pred ccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeecccccccCCCCCccCCcccEEEEecCCCCCCCc-
Q 042817 695 LKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPETSRFHNLHRVGIVNCKSLKDIT- 773 (922)
Q Consensus 695 ~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~- 773 (922)
.+..++.+.+..... .+....+..++.|+.+...... ++...+ ..+.+|+.+.+.+ .++.++
T Consensus 251 ~~~~l~~~~~~~~~~---~i~~~~F~~~~~l~~~~~~~~~---i~~~~F---------~~~~~L~~i~l~~--~i~~I~~ 313 (394)
T 4fs7_A 251 GCTDLESISIQNNKL---RIGGSLFYNCSGLKKVIYGSVI---VPEKTF---------YGCSSLTEVKLLD--SVKFIGE 313 (394)
T ss_dssp TCSSCCEEEECCTTC---EECSCTTTTCTTCCEEEECSSE---ECTTTT---------TTCTTCCEEEECT--TCCEECT
T ss_pred ccccceeEEcCCCcc---eeeccccccccccceeccCcee---eccccc---------ccccccccccccc--ccceech
Confidence 345666666654321 2222235566677766554332 111111 1367788887754 344443
Q ss_pred -hhhccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCccceeecCccccccccccC-CcCCCCccEEEec
Q 042817 774 -WLIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLESLKLARLPNLESVYWT-PLSFSHLKEIRIF 849 (922)
Q Consensus 774 -~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~l~~~-~~~~p~L~~L~i~ 849 (922)
.+..+++|+.++|.. .++.|.. ..+..+.+|+.+.|.. +++.+... ...+++|+.+.+.
T Consensus 314 ~aF~~c~~L~~i~lp~--~v~~I~~-------------~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 314 EAFESCTSLVSIDLPY--LVEEIGK-------------RSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TTTTTCTTCCEECCCT--TCCEECT-------------TTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEE
T ss_pred hhhcCCCCCCEEEeCC--cccEEhH-------------HhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEEC
Confidence 356678888888753 3555533 2455567788877743 35555432 2335667776664
No 180
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.10 E-value=1.3e-06 Score=82.78 Aligned_cols=101 Identities=19% Similarity=0.227 Sum_probs=73.9
Q ss_pred ccccceeeecccCCcceeecccccccCCCCCccCCcccEEEEecCCCCCCC--chhhcc----CCCcEEEEeccccchhh
Q 042817 722 MEKLRNLFIADSSFEKLQIDCVGEIRKTPETSRFHNLHRVGIVNCKSLKDI--TWLIFA----PNLRILEISYCFEMTEI 795 (922)
Q Consensus 722 ~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l--~~l~~l----~~L~~L~L~~c~~l~~i 795 (922)
-.+|+.|++++|.+.......+. .+++|++|+|++|..+++- ..+..+ ++|++|+|++|..+++-
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~---------~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHME---------GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGT---------TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred CceEeEEeCcCCCccHHHHHHhc---------CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 35799999999986554333332 4899999999999888763 335543 58999999999988875
Q ss_pred hcccccccccccCCCCCCccCCccceeecCcccccccccc----CCcCCCCcc
Q 042817 796 ISQAKVDEFGATAGNHHQIPFAKLESLKLARLPNLESVYW----TPLSFSHLK 844 (922)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~l~~----~~~~~p~L~ 844 (922)
.- .....+++|++|+|++|+.++.... ....+|+++
T Consensus 131 Gl-------------~~L~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 131 GI-------------IALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp HH-------------HHGGGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred HH-------------HHHhcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 43 2445689999999999998876421 122467665
No 181
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.09 E-value=0.00013 Score=77.74 Aligned_cols=179 Identities=17% Similarity=0.185 Sum_probs=101.8
Q ss_pred CcccchhhHHHHHHHHhcc------------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHH
Q 042817 157 PRIIGQESIFDDAWRCMIE------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLE 224 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 224 (922)
..++|.+..++.+.+.+.. ...+-|.++|++|+|||+||+++++.. . .. ..+.++.+.-.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~-~-~~---~~~~i~~~~l~~-- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA-N-NS---TFFSISSSDLVS-- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT-T-SC---EEEEEECCSSCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc-C-CC---cEEEEEhHHHHh--
Confidence 4689999888888776531 123678899999999999999999875 1 11 223344332110
Q ss_pred HHHHHHHhhccCCcccccCCChhhhHHHHHH-HhcCCcEEEEEccCCCccc-------------cccccccC---CCCCC
Q 042817 225 KVQEDIGKKIDMFSESWKNKSPVEKSCAIFK-ILSNKKFVLLLDDMWEPVD-------------LTKVGVPI---PNSTN 287 (922)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~-------------~~~l~~~~---~~~~~ 287 (922)
.+...... ....+.+ .-..++.+|+||+++.... ...+...+ .....
T Consensus 85 ---------------~~~g~~~~-~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 148 (322)
T 1xwi_A 85 ---------------KWLGESEK-LVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 148 (322)
T ss_dssp ---------------SSCCSCHH-HHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCT
T ss_pred ---------------hhhhHHHH-HHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCC
Confidence 01111222 2223333 2346789999999975310 01111111 11123
Q ss_pred CcEEEEEcCChhhhcc-c--cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCc-hhHHHHHH
Q 042817 288 ASKVVFTTRYKEVCGK-M--EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGL-PLAIITIG 361 (922)
Q Consensus 288 gs~IivTtR~~~v~~~-~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~g 361 (922)
+..||.||........ + .....+.++..+.++-.+++.......... -.......|++.+.|. +-.|..+.
T Consensus 149 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~---l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 149 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNS---LTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp TEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBC---CCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCC---CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4556666654432111 0 223567888889999999998876543211 1245667888999887 43455443
No 182
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.04 E-value=1.9e-05 Score=84.76 Aligned_cols=175 Identities=13% Similarity=0.046 Sum_probs=99.9
Q ss_pred CcccchhhHHHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhcc
Q 042817 157 PRIIGQESIFDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (922)
..++|++..++.+.+++..+.. .++.+.|++|+|||++|+++++.. . ...+.++.+.. ....+...+.....
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l---~---~~~~~i~~~~~-~~~~i~~~~~~~~~ 98 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---N---ADMMFVNGSDC-KIDFVRGPLTNFAS 98 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT---T---EEEEEEETTTC-CHHHHHTHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---C---CCEEEEccccc-CHHHHHHHHHHHHh
Confidence 4689999999999999986544 577778889999999999999886 1 22445554332 22222211111110
Q ss_pred CCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCcc---ccccccccCCCCCCCcEEEEEcCChhhh-cc-cccccee
Q 042817 236 MFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPV---DLTKVGVPIPNSTNASKVVFTTRYKEVC-GK-MEAHKKL 310 (922)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---~~~~l~~~~~~~~~gs~IivTtR~~~v~-~~-~~~~~~~ 310 (922)
.. ...+++.++++||++... ....+...+.....+.++|+||....-. .. ......+
T Consensus 99 ~~------------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i 160 (324)
T 3u61_B 99 AA------------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVI 160 (324)
T ss_dssp BC------------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEE
T ss_pred hc------------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEE
Confidence 00 012377899999997653 2222222221112356788887765421 11 1122478
Q ss_pred ecCCCCHHHHHHHH-------HHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHH
Q 042817 311 RVECLTADDAWMLF-------KVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAII 358 (922)
Q Consensus 311 ~l~~L~~~ea~~Lf-------~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 358 (922)
.+++++.++-.+++ ...+.......++ .+....|++.++|.+-.+.
T Consensus 161 ~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 161 TFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHH
Confidence 99999988743332 2222211111111 2667788888888775443
No 183
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.03 E-value=8.3e-06 Score=88.34 Aligned_cols=12 Identities=8% Similarity=0.149 Sum_probs=7.4
Q ss_pred CCcccEEEEecC
Q 042817 755 FHNLHRVGIVNC 766 (922)
Q Consensus 755 l~~L~~L~L~~c 766 (922)
+++|+.|+|++|
T Consensus 306 l~~L~~L~L~~n 317 (362)
T 2ra8_A 306 IKHLKFINMKYN 317 (362)
T ss_dssp HTTCSEEECCSB
T ss_pred CCcceEEECCCC
Confidence 556666666655
No 184
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.03 E-value=2.3e-05 Score=86.73 Aligned_cols=283 Identities=12% Similarity=0.092 Sum_probs=145.9
Q ss_pred cCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccC-ccccCcccCCeeeeccC-----------------
Q 042817 535 ATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFP-PGISKLISLQYLNLSST----------------- 596 (922)
Q Consensus 535 ~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~L~~~----------------- 596 (922)
..|.+|+.+.+..+ ++.+....|.++.+|+.+++..+ ++.++ ..+.++.+|+.+.+..+
T Consensus 68 ~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~ 144 (394)
T 4fs7_A 68 QGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEI 144 (394)
T ss_dssp TTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEE
T ss_pred hCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCceeeecceeeeccccccc
Confidence 45566666666432 55555555666666666666543 33333 23444555554444321
Q ss_pred ----Ccccc-chhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCCcccccccCcccccCccchHHHhhcCC
Q 042817 597 ----GIRVL-PEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCGALERAEHGSVLFNGGEILIEELLCLN 671 (922)
Q Consensus 597 ----~i~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 671 (922)
.+..+ ...+.++++|+.+.+..+ +..++.+.+.++++|+.+.+..+-. ......+....
T Consensus 145 ~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~~~--------------~I~~~~F~~~~ 208 (394)
T 4fs7_A 145 TIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRNLK--------------IIRDYCFAECI 208 (394)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTTCC--------------EECTTTTTTCT
T ss_pred ccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCCce--------------EeCchhhcccc
Confidence 11111 123566777777777654 3556666677777777776654310 00111223334
Q ss_pred CCceEEEEEechhHHHHHhhcccccCcceEEEEcCcccccccccccccccccccceeeecccCCcceeecccccccCCCC
Q 042817 672 HLSVLSVCLESDQALRKFLSSYRLKSSTQTLRLRKLKKESESLRTLSLTDMEKLRNLFIADSSFEKLQIDCVGEIRKTPE 751 (922)
Q Consensus 672 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~ 751 (922)
.|+.+.+..... . ..........|+.+.+.... ..+....+..+.+|+.+.+..+. ..+....+.
T Consensus 209 ~L~~i~~~~~~~-~---i~~~~~~~~~l~~i~ip~~~---~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~------- 273 (394)
T 4fs7_A 209 LLENMEFPNSLY-Y---LGDFALSKTGVKNIIIPDSF---TELGKSVFYGCTDLESISIQNNK-LRIGGSLFY------- 273 (394)
T ss_dssp TCCBCCCCTTCC-E---ECTTTTTTCCCCEEEECTTC---CEECSSTTTTCSSCCEEEECCTT-CEECSCTTT-------
T ss_pred ccceeecCCCce-E---eehhhcccCCCceEEECCCc---eecccccccccccceeEEcCCCc-ceeeccccc-------
Confidence 444333211000 0 00111123456666665322 12222236677888888776542 223222222
Q ss_pred CccCCcccEEEEecCCCCCCCchhhccCCCcEEEEeccccchhhhcccccccccccCCCCCCccCCccceeecCcccccc
Q 042817 752 TSRFHNLHRVGIVNCKSLKDITWLIFAPNLRILEISYCFEMTEIISQAKVDEFGATAGNHHQIPFAKLESLKLARLPNLE 831 (922)
Q Consensus 752 ~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~ 831 (922)
.+.+|+.+...... +. -..+..+++|+.+.+.. .++.|.. ..+..+.+|+.+.|.+ +++
T Consensus 274 --~~~~l~~~~~~~~~-i~-~~~F~~~~~L~~i~l~~--~i~~I~~-------------~aF~~c~~L~~i~lp~--~v~ 332 (394)
T 4fs7_A 274 --NCSGLKKVIYGSVI-VP-EKTFYGCSSLTEVKLLD--SVKFIGE-------------EAFESCTSLVSIDLPY--LVE 332 (394)
T ss_dssp --TCTTCCEEEECSSE-EC-TTTTTTCTTCCEEEECT--TCCEECT-------------TTTTTCTTCCEECCCT--TCC
T ss_pred --cccccceeccCcee-ec-ccccccccccccccccc--ccceech-------------hhhcCCCCCCEEEeCC--ccc
Confidence 25667777664321 11 11355678999999864 4666644 3556678899998853 466
Q ss_pred ccccCC-cCCCCccEEEecCCCCCCCCCCCCC--cccccceEEEcc
Q 042817 832 SVYWTP-LSFSHLKEIRIFKCPRLWKLPLDSN--SAKERKIVIKGE 874 (922)
Q Consensus 832 ~l~~~~-~~~p~L~~L~i~~C~~L~~lp~~~~--~~~l~~l~I~g~ 874 (922)
.+.... ..+.+|+.+.+.. +++.++...- ..+|+.+.+...
T Consensus 333 ~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 333 EIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp EECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEGG
T ss_pred EEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECCC
Confidence 665432 3467888887743 3666654332 345677777643
No 185
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.03 E-value=4.6e-05 Score=82.74 Aligned_cols=178 Identities=15% Similarity=0.090 Sum_probs=101.3
Q ss_pred CcccchhhHHHHHHHHhcc------------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHH
Q 042817 157 PRIIGQESIFDDAWRCMIE------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLE 224 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 224 (922)
..++|.+..++++.+.+.. ...+.|.|+|++|+|||++|+++++.. ... .+.++++.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~---~~~i~~~~l~~-- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GAT---FFSISASSLTS-- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TCE---EEEEEGGGGCC--
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CCe---EEEEehHHhhc--
Confidence 4689999999998887642 235678999999999999999999876 222 34444432110
Q ss_pred HHHHHHHhhccCCcccccCCChhhhHHHHHH-HhcCCcEEEEEccCCCcc-------------ccccccccCC----CCC
Q 042817 225 KVQEDIGKKIDMFSESWKNKSPVEKSCAIFK-ILSNKKFVLLLDDMWEPV-------------DLTKVGVPIP----NST 286 (922)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~-------------~~~~l~~~~~----~~~ 286 (922)
. +.. ........+.. .-..++.+|+||+++... ....+...+. ...
T Consensus 156 ------------~---~~g-~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 219 (357)
T 3d8b_A 156 ------------K---WVG-EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSE 219 (357)
T ss_dssp ------------S---STT-HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CC
T ss_pred ------------c---ccc-hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCC
Confidence 0 000 11111222222 223567899999995320 0111211111 112
Q ss_pred CCcEEEEEcCChhhhc-cc--cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCC-chhHHHHHH
Q 042817 287 NASKVVFTTRYKEVCG-KM--EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGG-LPLAIITIG 361 (922)
Q Consensus 287 ~gs~IivTtR~~~v~~-~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~g 361 (922)
.+..||.||....... .+ .....+.+...+.++..+++...+...... -.......|++.+.| .+-.+..+.
T Consensus 220 ~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~---l~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 220 DRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC---LSEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp CCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC---CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC---ccHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3445666665443211 11 123467888889999988887766432211 124567888999988 455555544
No 186
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.99 E-value=3.2e-05 Score=83.57 Aligned_cols=179 Identities=15% Similarity=0.245 Sum_probs=101.2
Q ss_pred cccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCc-eEEEEEeCCCCCHHHHHHHHHhhccC
Q 042817 158 RIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFD-IVIWVVVSKDLNLEKVQEDIGKKIDM 236 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l~~ 236 (922)
.++|.+..++.+...+..++.+-+.++|++|+||||+|+.+++... ...+. .+.-++.+.......+...+ ..+..
T Consensus 26 ~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~~~~~~~~~~~~~ir~~i-~~~~~ 102 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY--GKNYSNMVLELNASDDRGIDVVRNQI-KDFAS 102 (340)
T ss_dssp GCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH--TTSHHHHEEEECTTSCCSHHHHHTHH-HHHHH
T ss_pred HhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc--CCCccceEEEEcCcccccHHHHHHHH-HHHHh
Confidence 5689999999998888776554589999999999999999999862 11221 12223332222222221111 11000
Q ss_pred CcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCc--cccccccccCCCCCCCcEEEEEcCChh-hhccc-cccceeec
Q 042817 237 FSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVFTTRYKE-VCGKM-EAHKKLRV 312 (922)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~~~-v~~~~-~~~~~~~l 312 (922)
.. ..+.+.+-++|+|+++.. ...+.+...+.......++|++|.... +.... +....+.+
T Consensus 103 ~~----------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~ 166 (340)
T 1sxj_C 103 TR----------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRF 166 (340)
T ss_dssp BC----------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred hc----------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEec
Confidence 00 001234678999998653 122222222211224556777665432 21111 12246889
Q ss_pred CCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHH
Q 042817 313 ECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAII 358 (922)
Q Consensus 313 ~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 358 (922)
.+++.++..+.+...+...... -..+..+.|++.++|.+--+.
T Consensus 167 ~~l~~~~~~~~l~~~~~~~~~~---i~~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 167 QPLPQEAIERRIANVLVHEKLK---LSPNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp CCCCHHHHHHHHHHHHHTTTCC---BCHHHHHHHHHHHTTCHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 9999999988887766322211 114566788888898886443
No 187
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.97 E-value=7.6e-05 Score=80.24 Aligned_cols=169 Identities=12% Similarity=0.027 Sum_probs=100.1
Q ss_pred hhHHHHHHHHhccCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhcc-------------------CCCceEEEEEeCCCCC
Q 042817 163 ESIFDDAWRCMIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCQER-------------------HDFDIVIWVVVSKDLN 222 (922)
Q Consensus 163 ~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~F~~~~wv~~s~~~~ 222 (922)
++..+.+...+..++. +.+-++|+.|+|||++|+.+++...... .++| ..++.....
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~-- 84 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKG-- 84 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTT--
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEecccc--
Confidence 4556777777766554 5789999999999999999998862111 0122 122221100
Q ss_pred HHHHHHHHHhhccCCcccccCCChhhhHHHHHHHh-----cCCcEEEEEccCCCcc--ccccccccCCCCCCCcEEEEEc
Q 042817 223 LEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKIL-----SNKKFVLLLDDMWEPV--DLTKVGVPIPNSTNASKVVFTT 295 (922)
Q Consensus 223 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTt 295 (922)
......++. ..+.+.+ .+++-++|+|+++... ..+.+...+.....++.+|++|
T Consensus 85 ------------------~~~~~i~~i-r~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t 145 (334)
T 1a5t_A 85 ------------------KNTLGVDAV-REVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLAT 145 (334)
T ss_dssp ------------------CSSBCHHHH-HHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEE
T ss_pred ------------------CCCCCHHHH-HHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEe
Confidence 001111111 2222222 2567899999997642 2333333333334466777776
Q ss_pred CChh-hhccc-cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHHH
Q 042817 296 RYKE-VCGKM-EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITIG 361 (922)
Q Consensus 296 R~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 361 (922)
.+.+ +...+ +....+.+.+++.++..+.+.... . -..+.+..+++.++|.|..+..+.
T Consensus 146 ~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---~-----~~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 146 REPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV---T-----MSQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp SCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---C-----CCHHHHHHHHHHTTTCHHHHHHTT
T ss_pred CChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---C-----CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 6553 32211 223578999999999999998775 1 113456789999999997765443
No 188
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.97 E-value=1.6e-05 Score=86.10 Aligned_cols=86 Identities=21% Similarity=0.262 Sum_probs=49.0
Q ss_pred hhhccCCCceEEEccCCCCCcccCccccCcccCCeeeeccCCccc-cchhhc--cCCCCCEEeCCCCcc-------cccc
Q 042817 556 NFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLNLSSTGIRV-LPEELK--ALKDLSYLNMERTSF-------VRRI 625 (922)
Q Consensus 556 ~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~-lp~~l~--~l~~L~~L~l~~~~~-------l~~l 625 (922)
..+..+++|+.|+|++|..+ .+|. +. +++|+.|++..|.+.. -...+. .+++|++|+|+.+.. +..+
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 44667788888888877322 4444 33 7788888887776642 112232 577788777753210 1111
Q ss_pred Chhhh--CCCCCCCEEEeecCC
Q 042817 626 PRQLI--SNFPLLRVLRMLDCG 645 (922)
Q Consensus 626 p~~~i--~~l~~L~~L~l~~~~ 645 (922)
... + ..+++|++|++.+|.
T Consensus 243 ~~~-l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 243 RPL-FSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp GGG-SCTTTCTTCCEEEEESCT
T ss_pred HHH-HhcCCCCCcCEEeCCCCC
Confidence 111 2 246677777776665
No 189
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.97 E-value=8.1e-05 Score=79.62 Aligned_cols=177 Identities=17% Similarity=0.188 Sum_probs=102.3
Q ss_pred CcccchhhHHHHHHHHhc----------c--CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHH
Q 042817 157 PRIIGQESIFDDAWRCMI----------E--EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLE 224 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~----------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 224 (922)
..++|.+..++++.+.+. . ...+-+.++|++|+|||++|+++++.. ...| +.++.+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~---~~v~~~------ 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTF---FSVSSS------ 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCEE---EEEEHH------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCCE---EEEchH------
Confidence 468999999999988772 1 123568899999999999999999986 3322 233321
Q ss_pred HHHHHHHhhccCCcccccCCChhhhHHHHHH-HhcCCcEEEEEccCCCccc-------------ccccccc---CCCCCC
Q 042817 225 KVQEDIGKKIDMFSESWKNKSPVEKSCAIFK-ILSNKKFVLLLDDMWEPVD-------------LTKVGVP---IPNSTN 287 (922)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~-------------~~~l~~~---~~~~~~ 287 (922)
.+ .... .. ........+.+ .-..++.+|+||+++.... ...+... +.....
T Consensus 86 ~l----~~~~-------~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 86 DL----VSKW-------MG-ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp HH----HTTT-------GG-GHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred HH----hhcc-------cc-hHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 11 1110 01 11222222222 2345778999999975311 1111111 112234
Q ss_pred CcEEEEEcCChhhhcc-c--cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCc-hhHHHHH
Q 042817 288 ASKVVFTTRYKEVCGK-M--EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGL-PLAIITI 360 (922)
Q Consensus 288 gs~IivTtR~~~v~~~-~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~ 360 (922)
+..||.||........ + .-...+.++..+.++-.+++...+...... .-......|++.+.|. +-.|..+
T Consensus 154 ~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~---~~~~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCV---LTKEDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCC---CCHHHHHHHHHTTTTCCHHHHHHH
T ss_pred ceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCC---CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 5566667765433211 0 123567888899999999998887643311 1234567888888874 4444433
No 190
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.97 E-value=3.3e-05 Score=83.49 Aligned_cols=170 Identities=15% Similarity=0.101 Sum_probs=99.1
Q ss_pred CcccchhhHHHHHHHHhcc-----CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHH
Q 042817 157 PRIIGQESIFDDAWRCMIE-----EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIG 231 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 231 (922)
..++|++..++++..++.. .....+.|+|++|+|||++|+++++.. ...| +.++.+.......+...+
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~~~~~~- 101 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM---SANI---KTTAAPMIEKSGDLAAIL- 101 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT---TCCE---EEEEGGGCCSHHHHHHHH-
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCe---EEecchhccchhHHHHHH-
Confidence 4689999999999888763 344578899999999999999998876 3333 333333222211111111
Q ss_pred hhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCcc--ccccccccC------------------CCCCCCcEE
Q 042817 232 KKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPV--DLTKVGVPI------------------PNSTNASKV 291 (922)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~~------------------~~~~~gs~I 291 (922)
.. ..+..+|+||+++... ....+...+ ....++..+
T Consensus 102 ~~------------------------~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 102 TN------------------------LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp HT------------------------CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred Hh------------------------ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 10 1345677777776531 111110000 001113456
Q ss_pred EEEcCChhhhc-c-c-cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHHH
Q 042817 292 VFTTRYKEVCG-K-M-EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIITI 360 (922)
Q Consensus 292 ivTtR~~~v~~-~-~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 360 (922)
|.||....... . . .....+.+.+++.++...++...+..... .--.+....|++.+.|.|-.+..+
T Consensus 158 i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK---TCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC---EECHHHHHHHHHTTTTCHHHHHHH
T ss_pred EEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHCcCHHHHHHH
Confidence 66665533211 1 1 12357899999999999999877643221 112456778888899998555443
No 191
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.96 E-value=0.00012 Score=80.65 Aligned_cols=178 Identities=15% Similarity=0.127 Sum_probs=99.1
Q ss_pred CcccchhhHHHHHHHHhcc------------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHH
Q 042817 157 PRIIGQESIFDDAWRCMIE------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLE 224 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 224 (922)
..++|.+..++.+.+.+.. ...+-+.|+|++|+|||++|+++++.. ... .+.++++.-.+
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~~---~~~v~~~~l~~-- 186 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NAT---FFNISAASLTS-- 186 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TCE---EEEECSCCC----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cCc---EEEeeHHHhhc--
Confidence 4689999999999888731 224678999999999999999998876 222 23343332211
Q ss_pred HHHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCcc--------c-----cccccccC---CC-CCC
Q 042817 225 KVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPV--------D-----LTKVGVPI---PN-STN 287 (922)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~-----~~~l~~~~---~~-~~~ 287 (922)
. +...........+...-...+.+|+||+++... . ...+...+ .. ...
T Consensus 187 ~---------------~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 251 (389)
T 3vfd_A 187 K---------------YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDD 251 (389)
T ss_dssp --------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----
T ss_pred c---------------ccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCC
Confidence 0 001111111112222223466899999996430 0 01111111 11 122
Q ss_pred CcEEEEEcCChhhhc-cc--cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchh-HHHHH
Q 042817 288 ASKVVFTTRYKEVCG-KM--EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPL-AIITI 360 (922)
Q Consensus 288 gs~IivTtR~~~v~~-~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 360 (922)
...||.||....... .+ .....+.+...+.++-.+++...+..... .-.......|++.+.|..- ++..+
T Consensus 252 ~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~l~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS---PLTQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC---CSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 345665665433211 10 12246788899999999999887754321 1224567788999988654 45444
No 192
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.95 E-value=1.9e-05 Score=86.60 Aligned_cols=46 Identities=20% Similarity=0.303 Sum_probs=36.6
Q ss_pred CcccchhhHHHH---HHHHhccCCe--eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 157 PRIIGQESIFDD---AWRCMIEEQV--GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 157 ~~~vGr~~~~~~---l~~~L~~~~~--~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..|+|++..++. +.+.+..... +.+.|+|++|+|||++|+++++..
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999988766 4444444433 588999999999999999999987
No 193
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.95 E-value=0.00014 Score=76.96 Aligned_cols=173 Identities=14% Similarity=0.169 Sum_probs=98.7
Q ss_pred CcccchhhHHHHHHHHhcc-------------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCH
Q 042817 157 PRIIGQESIFDDAWRCMIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNL 223 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 223 (922)
..++|.+..++++.+.+.. ...+.+.|+|++|+|||+||+++++.. ...| +.++ .
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~~---i~v~------~ 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QANF---ISIK------G 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCEE---EEEC------H
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh---CCCE---EEEE------h
Confidence 3689999888888776642 234678999999999999999999986 2222 2222 2
Q ss_pred HHHHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCcc------------c----cccccccCC--CC
Q 042817 224 EKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPV------------D----LTKVGVPIP--NS 285 (922)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------------~----~~~l~~~~~--~~ 285 (922)
..+..... + .........+.......+.+|+||+++... . ...+...+. ..
T Consensus 83 ~~l~~~~~---g--------~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 83 PELLTMWF---G--------ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp HHHHHHHH---T--------TCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred HHHHhhhc---C--------chHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 23322221 1 111122223333334678999999997421 0 111111111 11
Q ss_pred CCCcEEEEEcCChhhhcc--c---cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhH
Q 042817 286 TNASKVVFTTRYKEVCGK--M---EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLA 356 (922)
Q Consensus 286 ~~gs~IivTtR~~~v~~~--~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 356 (922)
..+..||.||...+.... . .-...+.++..+.++-.+++..............+ ..+++.+.|.|-+
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCCHH
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCCCHH
Confidence 235567777765543211 1 12356889999999988888877654332222222 3455667776643
No 194
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.93 E-value=0.00016 Score=76.44 Aligned_cols=177 Identities=14% Similarity=0.114 Sum_probs=100.1
Q ss_pred CcccchhhHHHHHHHHhcc------------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHH
Q 042817 157 PRIIGQESIFDDAWRCMIE------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLE 224 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 224 (922)
..++|.+..++.+.+.+.. ...+.+.|+|++|+||||+|+++++.. ... .+.++.+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~~---~~~i~~~~l~~-- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SAT---FLNISAASLTS-- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TCE---EEEEESTTTSS--
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCC---eEEeeHHHHhh--
Confidence 4689999999998887632 234678999999999999999999886 222 23344332110
Q ss_pred HHHHHHHhhccCCcccccCCChhhhHHHHHH-HhcCCcEEEEEccCCCcccc-------------cccc---ccCCCC--
Q 042817 225 KVQEDIGKKIDMFSESWKNKSPVEKSCAIFK-ILSNKKFVLLLDDMWEPVDL-------------TKVG---VPIPNS-- 285 (922)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~-------------~~l~---~~~~~~-- 285 (922)
. ...........+.. ....++.+|+||+++....- ..+. ..++..
T Consensus 93 ------------~----~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 93 ------------K----YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp ------------S----SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred ------------c----ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCC
Confidence 0 01112222222222 23457789999999653110 0011 111111
Q ss_pred CCCcEEEEEcCChhhhcc-c--cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchh-HHHHH
Q 042817 286 TNASKVVFTTRYKEVCGK-M--EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPL-AIITI 360 (922)
Q Consensus 286 ~~gs~IivTtR~~~v~~~-~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 360 (922)
+.+..||.||........ . .....+.++..+.++-..++...+..... .-.......+++.+.|.+- ++..+
T Consensus 157 ~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 157 GDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGS---PLDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp --CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSC---CSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 234556667765432111 0 12346777788888888888776543221 1123566788899988875 44443
No 195
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.91 E-value=0.00017 Score=78.13 Aligned_cols=178 Identities=17% Similarity=0.158 Sum_probs=100.3
Q ss_pred CcccchhhHHHHHHHHhcc------------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHH
Q 042817 157 PRIIGQESIFDDAWRCMIE------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLE 224 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 224 (922)
..++|.+..++.+.+.+.. ...+-|.|+|++|+|||+||+++++.. ...| +.++.+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~~---~~v~~~------ 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTF---FSVSSS------ 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCEE---EEEEHH------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEeeHH------
Confidence 4689999999988887631 122457899999999999999999987 2222 233322
Q ss_pred HHHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCccc-------------cccccccC---CCCCCC
Q 042817 225 KVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPVD-------------LTKVGVPI---PNSTNA 288 (922)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------------~~~l~~~~---~~~~~g 288 (922)
. +.... ...........+...-..++.+|+||+++.... ...+...+ .....+
T Consensus 119 ~----l~~~~-------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 119 D----LVSKW-------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp H----HHSCC----------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred H----Hhhhh-------cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence 1 11111 111112222222222345789999999975321 11111111 112334
Q ss_pred cEEEEEcCChhhhc-cc--cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCc-hhHHHHH
Q 042817 289 SKVVFTTRYKEVCG-KM--EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGL-PLAIITI 360 (922)
Q Consensus 289 s~IivTtR~~~v~~-~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~ 360 (922)
..||.||....... .+ .....+.++..+.++-.+++.......... --......|++.+.|. +-.|..+
T Consensus 188 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~---~~~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSV---LTKEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp EEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBC---CCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred eEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCC---CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 55666776543211 00 223567888899999999998877543211 1144567888999884 4344443
No 196
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.88 E-value=0.00035 Score=78.10 Aligned_cols=178 Identities=17% Similarity=0.186 Sum_probs=100.0
Q ss_pred CcccchhhHHHHHHHHhcc------------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHH
Q 042817 157 PRIIGQESIFDDAWRCMIE------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLE 224 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 224 (922)
..++|.+..++.+.+.+.. ...+-|.|+|++|+|||+||+++++.. . .. -++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~-~-~~-----~~~~v~~~~--- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA-N-NS-----TFFSISSSD--- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC-C-SS-----EEEEECCC----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc-C-CC-----CEEEEeHHH---
Confidence 4689999999888877631 234678899999999999999999875 1 11 123333221
Q ss_pred HHHHHHHhhccCCcccccCCChhhhHHHHHH-HhcCCcEEEEEccCCCccc-------------cccccccCCC---CCC
Q 042817 225 KVQEDIGKKIDMFSESWKNKSPVEKSCAIFK-ILSNKKFVLLLDDMWEPVD-------------LTKVGVPIPN---STN 287 (922)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~---~~~ 287 (922)
+.... .+ .... ....+.+ .-..++.+|+||+++.... ...+...+.. ...
T Consensus 204 -l~~~~---~g--------~~~~-~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 270 (444)
T 2zan_A 204 -LVSKW---LG--------ESEK-LVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 270 (444)
T ss_dssp --------------------CCC-THHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCS
T ss_pred -HHhhh---cc--------hHHH-HHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCC
Confidence 11000 01 0111 1122222 2245789999999975310 1112222211 234
Q ss_pred CcEEEEEcCChhhhcc--c-cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCc-hhHHHHH
Q 042817 288 ASKVVFTTRYKEVCGK--M-EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGL-PLAIITI 360 (922)
Q Consensus 288 gs~IivTtR~~~v~~~--~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~ 360 (922)
+..||.||........ . .....+.++..+.++-..+|...+...... --......|++.+.|. +-.|..+
T Consensus 271 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~---l~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 271 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNS---LTEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp SCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEE---CCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCC---CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 5667767765433211 0 123467788888888888998876543211 1134567888999885 4344443
No 197
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.88 E-value=2.4e-05 Score=76.17 Aligned_cols=46 Identities=26% Similarity=0.367 Sum_probs=41.2
Q ss_pred CcccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 157 PRIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..++||+.+++++.+.+.....+.+.|+|++|+|||++|+++++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999987666678899999999999999999886
No 198
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.84 E-value=5e-06 Score=85.25 Aligned_cols=81 Identities=31% Similarity=0.388 Sum_probs=56.3
Q ss_pred ccCCCceEEEccCCCCCcc---cCccccCcccCCeeeeccCCccccchhhccCC--CCCEEeCCCCccccccCh------
Q 042817 559 QFMPSLKVLNLSNNFSLRE---FPPGISKLISLQYLNLSSTGIRVLPEELKALK--DLSYLNMERTSFVRRIPR------ 627 (922)
Q Consensus 559 ~~l~~L~~L~L~~~~~l~~---lp~~i~~L~~L~~L~L~~~~i~~lp~~l~~l~--~L~~L~l~~~~~l~~lp~------ 627 (922)
.++++|+.|+|++| .+.. +|..++.+++|++|+|++|.|+.+ ..+..+. +|++|++++|.....+|.
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 56778888888888 5554 445566788888888888888766 3345555 888888888875554542
Q ss_pred hhhCCCCCCCEEEe
Q 042817 628 QLISNFPLLRVLRM 641 (922)
Q Consensus 628 ~~i~~l~~L~~L~l 641 (922)
.++..+++|+.|+-
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 24567777777754
No 199
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.81 E-value=6e-05 Score=80.84 Aligned_cols=165 Identities=14% Similarity=0.144 Sum_probs=91.7
Q ss_pred HHHHHHHhccC--CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccC
Q 042817 166 FDDAWRCMIEE--QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKN 243 (922)
Q Consensus 166 ~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~ 243 (922)
...+......+ ....+.|+|++|+||||||+.+++.... . .+ .++++++. .+...+...+...
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~-~-~~-~~~~i~~~------~~~~~~~~~~~~~------ 87 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKK-R-GY-RVIYSSAD------DFAQAMVEHLKKG------ 87 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHH-T-TC-CEEEEEHH------HHHHHHHHHHHHT------
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHH-C-CC-EEEEEEHH------HHHHHHHHHHHcC------
Confidence 34444444433 3467899999999999999999998722 1 12 34555432 3333333332210
Q ss_pred CChhhhHHHHHHHhcCCcEEEEEccCCCccc----cccccccCCC-CCCCcEEEEEcCChhh---------hccccccce
Q 042817 244 KSPVEKSCAIFKILSNKKFVLLLDDMWEPVD----LTKVGVPIPN-STNASKVVFTTRYKEV---------CGKMEAHKK 309 (922)
Q Consensus 244 ~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----~~~l~~~~~~-~~~gs~IivTtR~~~v---------~~~~~~~~~ 309 (922)
. ...+...+. +.-+|++||+..... .+.+...+.. ...|..||+||....- ...+.....
T Consensus 88 -~----~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~ 161 (324)
T 1l8q_A 88 -T----INEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGIL 161 (324)
T ss_dssp -C----HHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEE
T ss_pred -c----HHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceE
Confidence 1 112222232 366999999965421 1222211110 1235578888764321 112223356
Q ss_pred eecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhH
Q 042817 310 LRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLA 356 (922)
Q Consensus 310 ~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 356 (922)
+.+++ +.++-.+++...+...... --.+....|++.+ |..-.
T Consensus 162 i~l~~-~~~e~~~il~~~~~~~~~~---l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 162 VEIEL-DNKTRFKIIKEKLKEFNLE---LRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp EECCC-CHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHC-SSHHH
T ss_pred EEeCC-CHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHhC-CCHHH
Confidence 89999 9999999998876432211 1245677788888 76543
No 200
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.80 E-value=0.00048 Score=76.05 Aligned_cols=100 Identities=13% Similarity=0.209 Sum_probs=50.5
Q ss_pred CceEEEeccCcccccchhhhccCCCceEEEccCC--CCCcccC-ccccCcccCCeeeeccCCccccch-hhccCCCCCEE
Q 042817 539 HLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNN--FSLREFP-PGISKLISLQYLNLSSTGIRVLPE-ELKALKDLSYL 614 (922)
Q Consensus 539 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~--~~l~~lp-~~i~~L~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L 614 (922)
.|+.+.+..+ ++.+....|.++.+|+.+.+..+ ..++.++ ..+..+.+|+.+.+..+ ++.++. .+..+.+|+.+
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 3566665543 55555555666666666666543 1233332 23445555555554332 333332 34555566666
Q ss_pred eCCCCccccccChhhhCCCCCCCEEEee
Q 042817 615 NMERTSFVRRIPRQLISNFPLLRVLRML 642 (922)
Q Consensus 615 ~l~~~~~l~~lp~~~i~~l~~L~~L~l~ 642 (922)
.+..+ +..++...+..+.+|+.+.+.
T Consensus 143 ~lp~~--~~~I~~~~F~~c~~L~~i~~~ 168 (394)
T 4gt6_A 143 TIPEG--VTSVADGMFSYCYSLHTVTLP 168 (394)
T ss_dssp ECCTT--CCEECTTTTTTCTTCCEEECC
T ss_pred cccce--eeeecccceeccccccccccc
Confidence 66543 344555445555566555554
No 201
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.79 E-value=0.00015 Score=81.66 Aligned_cols=149 Identities=13% Similarity=0.156 Sum_probs=81.6
Q ss_pred cccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcc--CCC-c-eEEEEEeCCCCCHHHHHHHHHhh
Q 042817 158 RIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQER--HDF-D-IVIWVVVSKDLNLEKVQEDIGKK 233 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~F-~-~~~wv~~s~~~~~~~~~~~i~~~ 233 (922)
.++||+.++++++..+......-+.|+|++|+|||++|+.+++...... ... + .++.++++ ..
T Consensus 181 ~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~------------~~- 247 (468)
T 3pxg_A 181 PVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG------------TK- 247 (468)
T ss_dssp CCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------------
T ss_pred CccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC------------cc-
Confidence 5899999999999999765445667999999999999999999862100 000 1 12223222 00
Q ss_pred ccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCccccccccccCCCCCCCcEEEEEcCChhhh------c-cccc
Q 042817 234 IDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPVDLTKVGVPIPNSTNASKVVFTTRYKEVC------G-KMEA 306 (922)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTtR~~~v~------~-~~~~ 306 (922)
+...........+...-..++.+|++| ........+...+. ....++|.+|...... . ....
T Consensus 248 -------~~g~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~R 316 (468)
T 3pxg_A 248 -------YRGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERR 316 (468)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHS
T ss_pred -------ccchHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHHh
Confidence 000011111222222233567899999 12222222332222 1235666666554411 1 1112
Q ss_pred cceeecCCCCHHHHHHHHHHhhCC
Q 042817 307 HKKLRVECLTADDAWMLFKVKVGE 330 (922)
Q Consensus 307 ~~~~~l~~L~~~ea~~Lf~~~~~~ 330 (922)
...+.+++.+.++..+++...+..
T Consensus 317 f~~i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 317 FQPIQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp EEEEECCCCCHHHHHHHHHHTTTT
T ss_pred CccceeCCCCHHHHHHHHHHHHHH
Confidence 236899999999999999876543
No 202
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.78 E-value=7.1e-05 Score=78.83 Aligned_cols=147 Identities=12% Similarity=0.073 Sum_probs=89.9
Q ss_pred chhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcc-CCCceEEEEEeCC-CCCHHHHHHHHHhhccCCc
Q 042817 161 GQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQER-HDFDIVIWVVVSK-DLNLEKVQEDIGKKIDMFS 238 (922)
Q Consensus 161 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~ 238 (922)
|.++.++.+...+..++.+.+-++|++|+||||+|+.+++...... .+.+ ..+++.+. ..++.++. ++.+......
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~ir-~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDIR-TIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHHH-HHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHHH-HHHHHHhhcc
Confidence 4566777888888776677899999999999999999988631111 2333 34454432 33333332 2333332111
Q ss_pred ccccCCChhhhHHHHHHHhcCCcEEEEEccCCCc--cccccccccCCCCCCCcEEEEEcCCh-hhhccccccceeecCCC
Q 042817 239 ESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEP--VDLTKVGVPIPNSTNASKVVFTTRYK-EVCGKMEAHKKLRVECL 315 (922)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~~-~v~~~~~~~~~~~l~~L 315 (922)
..+++-++|+|+++.. ...+.+...+....+.+.+|++|.+. .+...+... .+++.++
T Consensus 79 ------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l 139 (305)
T 2gno_A 79 ------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVN 139 (305)
T ss_dssp ------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECC
T ss_pred ------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCC
Confidence 1245779999999764 23344433333334566777666544 444444445 8999999
Q ss_pred CHHHHHHHHHHhh
Q 042817 316 TADDAWMLFKVKV 328 (922)
Q Consensus 316 ~~~ea~~Lf~~~~ 328 (922)
++++..+.+...+
T Consensus 140 ~~~~i~~~L~~~~ 152 (305)
T 2gno_A 140 VPKEFRDLVKEKI 152 (305)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999988776
No 203
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.76 E-value=0.00018 Score=77.50 Aligned_cols=169 Identities=12% Similarity=0.166 Sum_probs=98.3
Q ss_pred cccchhhHHHHHHHHhcc-------------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHH
Q 042817 158 RIIGQESIFDDAWRCMIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLE 224 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 224 (922)
.+.|.++.+++|.+.+.- ...+-|-++|++|.|||.||+++++.. ...| +.|..+.-.+
T Consensus 149 dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f---~~v~~s~l~s-- 220 (405)
T 4b4t_J 149 MVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT---DCKF---IRVSGAELVQ-- 220 (405)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH---TCEE---EEEEGGGGSC--
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh---CCCc---eEEEhHHhhc--
Confidence 578898888887766531 234567899999999999999999997 3333 3343322100
Q ss_pred HHHHHHHhhccCCcccccCCChhhhHHHHHH-HhcCCcEEEEEccCCCccc----------------cccccccCC--CC
Q 042817 225 KVQEDIGKKIDMFSESWKNKSPVEKSCAIFK-ILSNKKFVLLLDDMWEPVD----------------LTKVGVPIP--NS 285 (922)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~----------------~~~l~~~~~--~~ 285 (922)
.+.... +.....+.+ .-...++.|++|+++.... +..+...+. ..
T Consensus 221 ---------------k~vGes-e~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 284 (405)
T 4b4t_J 221 ---------------KYIGEG-SRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET 284 (405)
T ss_dssp ---------------SSTTHH-HHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC
T ss_pred ---------------cccchH-HHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC
Confidence 011111 122222222 2246789999999975210 111111111 12
Q ss_pred CCCcEEEEEcCChhhhcc-----ccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCch
Q 042817 286 TNASKVVFTTRYKEVCGK-----MEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLP 354 (922)
Q Consensus 286 ~~gs~IivTtR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 354 (922)
..+-.||.||...+.... -.-+..+.++..+.++-.++|+.+..........+ ...|++.+.|.-
T Consensus 285 ~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 285 SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 334556777776654321 12356788998899888899987765543232233 356777787764
No 204
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.73 E-value=4.7e-05 Score=79.17 Aligned_cols=151 Identities=14% Similarity=0.093 Sum_probs=81.7
Q ss_pred CcccchhhHHHHHHHHhcc------------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHH
Q 042817 157 PRIIGQESIFDDAWRCMIE------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLE 224 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 224 (922)
..++|.+..++++.+.+.. ...+-+.|+|++|+|||++|+++++.. ...|- .+..+.-.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~---~v~~~~~~--- 81 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---HVPFF---SMGGSSFI--- 81 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH---TCCCC---CCCSCTTT---
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEE---EechHHHH---
Confidence 4689998887777665431 112347799999999999999999987 22331 11111110
Q ss_pred HHHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCcc-----------------ccccccccCCC---
Q 042817 225 KVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPV-----------------DLTKVGVPIPN--- 284 (922)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------------~~~~l~~~~~~--- 284 (922)
...... ....... .+......++.+|+|||++... .+..+...+..
T Consensus 82 -------~~~~~~----~~~~~~~---~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (268)
T 2r62_A 82 -------EMFVGL----GASRVRD---LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS 147 (268)
T ss_dssp -------TSCSSS----CSSSSST---THHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC
T ss_pred -------Hhhcch----HHHHHHH---HHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc
Confidence 000000 0111111 1222233567899999996421 12223222221
Q ss_pred CCCCcEEEEEcCChhhhc-c-c---cccceeecCCCCHHHHHHHHHHhhCC
Q 042817 285 STNASKVVFTTRYKEVCG-K-M---EAHKKLRVECLTADDAWMLFKVKVGE 330 (922)
Q Consensus 285 ~~~gs~IivTtR~~~v~~-~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~ 330 (922)
......||.||....... . . .-...+.++..+.++-.+++...+..
T Consensus 148 ~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~ 198 (268)
T 2r62_A 148 ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKG 198 (268)
T ss_dssp SCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSS
T ss_pred CCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhc
Confidence 112245667776554321 1 1 12346788888888888888776543
No 205
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.00033 Score=76.82 Aligned_cols=169 Identities=15% Similarity=0.225 Sum_probs=97.1
Q ss_pred cccchhhHHHHHHHHhcc-------------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHH
Q 042817 158 RIIGQESIFDDAWRCMIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLE 224 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 224 (922)
.+.|.++.+++|.+.+.- ...+-|-++|++|.|||+||+++++.. ...| +.++.+.-.+
T Consensus 182 digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~~---~~v~~s~l~s-- 253 (437)
T 4b4t_L 182 GIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GANF---IFSPASGIVD-- 253 (437)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCEE---EEEEGGGTCC--
T ss_pred HhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEehhhhcc--
Confidence 578888888887766531 234678899999999999999999997 3332 3344332110
Q ss_pred HHHHHHHhhccCCcccccCCChhhhHHHHHH-HhcCCcEEEEEccCCCccc----------------cccccccCC--CC
Q 042817 225 KVQEDIGKKIDMFSESWKNKSPVEKSCAIFK-ILSNKKFVLLLDDMWEPVD----------------LTKVGVPIP--NS 285 (922)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~----------------~~~l~~~~~--~~ 285 (922)
.+.... ......+.. .-...+++|++|+++.... +..+...+. ..
T Consensus 254 ---------------k~~Ges-e~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 317 (437)
T 4b4t_L 254 ---------------KYIGES-ARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN 317 (437)
T ss_dssp ---------------SSSSHH-HHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC
T ss_pred ---------------ccchHH-HHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC
Confidence 011111 122222222 2346799999999975210 111111111 22
Q ss_pred CCCcEEEEEcCChhhhcc--cc---ccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCch
Q 042817 286 TNASKVVFTTRYKEVCGK--ME---AHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLP 354 (922)
Q Consensus 286 ~~gs~IivTtR~~~v~~~--~~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 354 (922)
..+..||.||...+.... .. -+..+.++..+.++-.++|+.+..........+ ...+++.+.|.-
T Consensus 318 ~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 318 LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred CCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 334567778876655332 11 245678888888888888877664433222233 355667777654
No 206
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.65 E-value=3.7e-05 Score=74.80 Aligned_cols=109 Identities=17% Similarity=0.135 Sum_probs=59.8
Q ss_pred cCCCCceEEEeccC-cccccc----hhhhccCCCceEEEccCCCCCcc-----cCccccCcccCCeeeeccCCccc----
Q 042817 535 ATCPHLLTLFLQNN-RLSNIT----ANFFQFMPSLKVLNLSNNFSLRE-----FPPGISKLISLQYLNLSSTGIRV---- 600 (922)
Q Consensus 535 ~~~~~L~~L~l~~~-~l~~~~----~~~~~~l~~L~~L~L~~~~~l~~-----lp~~i~~L~~L~~L~L~~~~i~~---- 600 (922)
..+++|++|++++| .+.... ...+...++|++|+|++| .+.. +...+...++|++|+|++|.|..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 44566777777776 554321 222445566777777777 4432 33334445667777777776652
Q ss_pred -cchhhccCCCCCEEeC--CCCccccc----cChhhhCCCCCCCEEEeecCC
Q 042817 601 -LPEELKALKDLSYLNM--ERTSFVRR----IPRQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 601 -lp~~l~~l~~L~~L~l--~~~~~l~~----lp~~~i~~l~~L~~L~l~~~~ 645 (922)
+...+...++|++|++ ++|..-.. +.. .+...++|++|++++|.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSS
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCC
Confidence 4555666666777777 55542111 111 13444566666666554
No 207
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.63 E-value=0.00014 Score=88.62 Aligned_cols=152 Identities=13% Similarity=0.193 Sum_probs=83.1
Q ss_pred cccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcc--CC--CceEEEEEeCCCCCHHHHHHHHHhh
Q 042817 158 RIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQER--HD--FDIVIWVVVSKDLNLEKVQEDIGKK 233 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~--F~~~~wv~~s~~~~~~~~~~~i~~~ 233 (922)
.++||+.+++++++.|.....+-+.++|++|+||||+|+.+++...... .. -..+++++++.-..
T Consensus 171 ~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~----------- 239 (854)
T 1qvr_A 171 PVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA----------- 239 (854)
T ss_dssp CCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC----------------
T ss_pred ccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-----------
Confidence 5799999999999999765555678999999999999999999862100 01 11344444322100
Q ss_pred ccCCcccccCCChhhhHHHHHHHhc--CCcEEEEEccCCCccc-------cc---cccccCCCCCCCcEEEEEcCChhh-
Q 042817 234 IDMFSESWKNKSPVEKSCAIFKILS--NKKFVLLLDDMWEPVD-------LT---KVGVPIPNSTNASKVVFTTRYKEV- 300 (922)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~-------~~---~l~~~~~~~~~gs~IivTtR~~~v- 300 (922)
+. . ...........+.+.+. +++.+|++|++..... ++ .+...+ .. .+..+|.||.....
T Consensus 240 -g~---~-~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l-~~-~~i~~I~at~~~~~~ 312 (854)
T 1qvr_A 240 -GA---K-YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL-AR-GELRLIGATTLDEYR 312 (854)
T ss_dssp -----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHH-HT-TCCCEEEEECHHHHH
T ss_pred -cC---c-cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH-hC-CCeEEEEecCchHHh
Confidence 00 0 01122222333333332 3689999999975320 11 111111 11 23446655553322
Q ss_pred ----hcc-ccccceeecCCCCHHHHHHHHHHh
Q 042817 301 ----CGK-MEAHKKLRVECLTADDAWMLFKVK 327 (922)
Q Consensus 301 ----~~~-~~~~~~~~l~~L~~~ea~~Lf~~~ 327 (922)
... ......+.+++++.++..+++...
T Consensus 313 ~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 313 EIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred hhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 111 112245889999999999998654
No 208
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.63 E-value=4.7e-05 Score=70.75 Aligned_cols=45 Identities=27% Similarity=0.330 Sum_probs=35.4
Q ss_pred cccchhhHHHHHHHHhcc--CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 158 RIIGQESIFDDAWRCMIE--EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.++|+...+.++.+.+.. ....-|.|+|.+|+|||++|+++++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999998887753 233456799999999999999999875
No 209
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.00094 Score=72.19 Aligned_cols=169 Identities=18% Similarity=0.203 Sum_probs=96.0
Q ss_pred cccchhhHHHHHHHHhc----c---------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHH
Q 042817 158 RIIGQESIFDDAWRCMI----E---------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLE 224 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 224 (922)
.+.|.++.+++|.+.+. . ...+-|-++|++|.|||.||+++++.. ...| +.++.+.-
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~f---i~v~~s~l---- 252 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT---SATF---LRIVGSEL---- 252 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH---TCEE---EEEESGGG----
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh---CCCE---EEEEHHHh----
Confidence 57788888888776543 1 234678899999999999999999997 3333 23332211
Q ss_pred HHHHHHHhhccCCcccccCCChhhhHHHHHHH-hcCCcEEEEEccCCCccc----------------cccccccCC--CC
Q 042817 225 KVQEDIGKKIDMFSESWKNKSPVEKSCAIFKI-LSNKKFVLLLDDMWEPVD----------------LTKVGVPIP--NS 285 (922)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~----------------~~~l~~~~~--~~ 285 (922)
. ..+.. ..+.....+... -...+++|++|+++.... +..+...+. ..
T Consensus 253 ----------~---sk~vG-esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~ 318 (437)
T 4b4t_I 253 ----------I---QKYLG-DGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD 318 (437)
T ss_dssp ----------C---CSSSS-HHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC
T ss_pred ----------h---hccCc-hHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC
Confidence 0 00111 112222222222 245789999999975210 001111111 12
Q ss_pred CCCcEEEEEcCChhhhcc--c---cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCch
Q 042817 286 TNASKVVFTTRYKEVCGK--M---EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLP 354 (922)
Q Consensus 286 ~~gs~IivTtR~~~v~~~--~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 354 (922)
..+..||.||...+.... . .-+..+.++..+.++-.++|..+..........+ ...|++.+.|.-
T Consensus 319 ~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 319 RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCC
T ss_pred CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 234567777776665332 1 1234678888888888888887765443333333 355667777653
No 210
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.61 E-value=3.4e-05 Score=79.07 Aligned_cols=80 Identities=31% Similarity=0.393 Sum_probs=65.0
Q ss_pred cCCCCceEEEeccCcccccch--hhhccCCCceEEEccCCCCCcccCccccCcc--cCCeeeeccCCccc-cc-------
Q 042817 535 ATCPHLLTLFLQNNRLSNITA--NFFQFMPSLKVLNLSNNFSLREFPPGISKLI--SLQYLNLSSTGIRV-LP------- 602 (922)
Q Consensus 535 ~~~~~L~~L~l~~~~l~~~~~--~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~--~L~~L~L~~~~i~~-lp------- 602 (922)
..+++|++|+|++|.+..++. ..+..+++|++|+|++| .+..+ ..++.+. +|++|+|++|.+.. +|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 468899999999999888653 55778999999999999 77776 3456666 99999999998873 44
Q ss_pred hhhccCCCCCEEeC
Q 042817 603 EELKALKDLSYLNM 616 (922)
Q Consensus 603 ~~l~~l~~L~~L~l 616 (922)
..+..+++|+.||-
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 34788999999973
No 211
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.58 E-value=4.3e-05 Score=74.07 Aligned_cols=117 Identities=20% Similarity=0.198 Sum_probs=62.8
Q ss_pred hhhHHHHHHHHhcc---CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCc
Q 042817 162 QESIFDDAWRCMIE---EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFS 238 (922)
Q Consensus 162 r~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 238 (922)
++..++.+.+++.+ .....+.|+|++|+||||||+++++... ....+ .++++ +..++...+........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~-~~~g~-~~~~~------~~~~~~~~~~~~~~~~~ 90 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY-EKKGI-RGYFF------DTKDLIFRLKHLMDEGK 90 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH-HHSCC-CCCEE------EHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH-HHcCC-eEEEE------EHHHHHHHHHHHhcCch
Confidence 44455555555543 2346899999999999999999999872 11122 12333 34455555544332111
Q ss_pred ccccCCChhhhHHHHHHHhcCCcEEEEEccCCC--ccccc--cccccCCC-CCCCcEEEEEcCCh
Q 042817 239 ESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWE--PVDLT--KVGVPIPN-STNASKVVFTTRYK 298 (922)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~--~l~~~~~~-~~~gs~IivTtR~~ 298 (922)
.. .+.+.+. +.-+|||||++. ...|. .+...+.. ...|..||+||...
T Consensus 91 -------~~----~~~~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 91 -------DT----KFLKTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp -------CS----HHHHHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred -------HH----HHHHHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 01 1222222 456899999973 22221 11111111 12466788888743
No 212
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.00074 Score=73.75 Aligned_cols=170 Identities=14% Similarity=0.205 Sum_probs=97.2
Q ss_pred cccchhhHHHHHHHHhc----c---------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHH
Q 042817 158 RIIGQESIFDDAWRCMI----E---------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLE 224 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 224 (922)
.+.|.++.+++|.+.+. . ...+-|-++|++|.|||.||+++++.. ...| +.+..+.-.+
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~f---i~vs~s~L~s-- 281 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT---DATF---IRVIGSELVQ-- 281 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCEE---EEEEGGGGCC--
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCCe---EEEEhHHhhc--
Confidence 57888888888876542 1 245678899999999999999999997 3333 3333322100
Q ss_pred HHHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCccc----------------cccccccCC--CCC
Q 042817 225 KVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPVD----------------LTKVGVPIP--NST 286 (922)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----------------~~~l~~~~~--~~~ 286 (922)
.+.......+.......-...+++|++|+++.... ...+...+. ...
T Consensus 282 ---------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 346 (467)
T 4b4t_H 282 ---------------KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR 346 (467)
T ss_dssp ---------------CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT
T ss_pred ---------------ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC
Confidence 01111111112222222346789999999975210 001111111 122
Q ss_pred CCcEEEEEcCChhhhcc--c---cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCch
Q 042817 287 NASKVVFTTRYKEVCGK--M---EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLP 354 (922)
Q Consensus 287 ~gs~IivTtR~~~v~~~--~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 354 (922)
.+..||.||...+.... . .-+..+.++..+.++-.++|+.+..........+ ...|++.|.|.-
T Consensus 347 ~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 347 GNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp TTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred CcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 34456667765554321 1 2346788888888888889987765443332233 355777887763
No 213
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.00034 Score=76.58 Aligned_cols=169 Identities=13% Similarity=0.170 Sum_probs=95.4
Q ss_pred cccchhhHHHHHHHHhc----c---------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHH
Q 042817 158 RIIGQESIFDDAWRCMI----E---------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLE 224 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 224 (922)
.+.|.++.+++|.+.+. . ...+-|-++|++|.|||.||+++++.. ...| +.++.+.-
T Consensus 182 digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~f---~~v~~s~l---- 251 (434)
T 4b4t_M 182 DVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT---NATF---LKLAAPQL---- 251 (434)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCEE---EEEEGGGG----
T ss_pred hcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh---CCCE---EEEehhhh----
Confidence 57899988888876642 1 234678899999999999999999997 3332 33332221
Q ss_pred HHHHHHHhhccCCcccccCCChhhhHHHHHH-HhcCCcEEEEEccCCCc-------cc---------cccccccCCC--C
Q 042817 225 KVQEDIGKKIDMFSESWKNKSPVEKSCAIFK-ILSNKKFVLLLDDMWEP-------VD---------LTKVGVPIPN--S 285 (922)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~-------~~---------~~~l~~~~~~--~ 285 (922)
. ..+... .......+.. .-...+++|++|+++.. .. ...+...+.. .
T Consensus 252 ----------~---~~~vGe-se~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~ 317 (434)
T 4b4t_M 252 ----------V---QMYIGE-GAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS 317 (434)
T ss_dssp ----------C---SSCSSH-HHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS
T ss_pred ----------h---hcccch-HHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC
Confidence 0 001111 1122222222 22357899999998631 00 1111111211 1
Q ss_pred CCCcEEEEEcCChhhhccc-----cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCch
Q 042817 286 TNASKVVFTTRYKEVCGKM-----EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLP 354 (922)
Q Consensus 286 ~~gs~IivTtR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 354 (922)
..+-.||.||...+..... .-+..+.++..+.++-.++|..+..........+ ...|++.+.|.-
T Consensus 318 ~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 318 DDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp SCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred CCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 2344566677766553321 1245788888888888888876654332222223 355677777753
No 214
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.56 E-value=4.2e-05 Score=74.41 Aligned_cols=106 Identities=17% Similarity=0.139 Sum_probs=82.8
Q ss_pred cccceEEeeecc-cccc-----cc-cccCCCCceEEEeccCcccccc----hhhhccCCCceEEEccCCCCCcc-----c
Q 042817 515 WKGVKRMSLMNN-KIRN-----LS-EPATCPHLLTLFLQNNRLSNIT----ANFFQFMPSLKVLNLSNNFSLRE-----F 578 (922)
Q Consensus 515 ~~~l~~l~l~~~-~~~~-----~~-~~~~~~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~L~~~~~l~~-----l 578 (922)
.+.++.|++++| .+.. +. .....++|++|++++|.+.... ...+...+.|++|+|++| .+.. +
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~l 113 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILAL 113 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHHH
Confidence 467999999998 7754 11 2256789999999999876532 233566789999999999 6654 5
Q ss_pred CccccCcccCCeeee--ccCCcc-----ccchhhccCCCCCEEeCCCCcc
Q 042817 579 PPGISKLISLQYLNL--SSTGIR-----VLPEELKALKDLSYLNMERTSF 621 (922)
Q Consensus 579 p~~i~~L~~L~~L~L--~~~~i~-----~lp~~l~~l~~L~~L~l~~~~~ 621 (922)
...+....+|++|+| ++|.|. .+...+...++|++|++++|..
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 667788889999999 889887 3666778889999999999963
No 215
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.53 E-value=0.001 Score=68.36 Aligned_cols=172 Identities=13% Similarity=0.143 Sum_probs=90.5
Q ss_pred CcccchhhHHHHHHHHh---cc---------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHH
Q 042817 157 PRIIGQESIFDDAWRCM---IE---------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLE 224 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L---~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 224 (922)
..++|.+..++++.+.+ .. ...+-+.|+|++|+||||+|+++++.. ...| +.++.+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~---~~i~~~~~~~-- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSDFVE-- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCE---EEECSCSSTT--
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCCE---EEEeHHHHHH--
Confidence 46899988877765543 21 112358899999999999999999886 2232 3333221100
Q ss_pred HHHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCccc----------------cccccccCC--CCC
Q 042817 225 KVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPVD----------------LTKVGVPIP--NST 286 (922)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----------------~~~l~~~~~--~~~ 286 (922)
. ............+.......+.++++|+++.... ...+...+. ...
T Consensus 84 --------~-------~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 84 --------M-------FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp --------S-------CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred --------H-------hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 0 0111122222233333345678999999843110 011111110 112
Q ss_pred CCcEEEEEcCChhhh-ccc----cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCC-chh
Q 042817 287 NASKVVFTTRYKEVC-GKM----EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGG-LPL 355 (922)
Q Consensus 287 ~gs~IivTtR~~~v~-~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPL 355 (922)
.+..||.||...+.. ... .-...+.++..+.++-.+++.............. ...+++.+.| .+-
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~----~~~la~~~~G~~~~ 219 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGFSGA 219 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCCHH
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcccc----HHHHHHHcCCCCHH
Confidence 345677777655432 111 1234677888888888888877654332222111 2345666666 443
No 216
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.50 E-value=0.00072 Score=76.05 Aligned_cols=174 Identities=14% Similarity=0.136 Sum_probs=98.1
Q ss_pred cccchhhHHHHHHHHhcc-------------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHH
Q 042817 158 RIIGQESIFDDAWRCMIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLE 224 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 224 (922)
.++|.+..++++.+.+.. ...+-|.|+|++|+|||++|+++++.. ...| +.++++
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~~f---v~vn~~------ 272 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFF---FLINGP------ 272 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SSEE---EEEEHH------
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CCCE---EEEEch------
Confidence 579999999888877642 233568899999999999999998875 2222 334321
Q ss_pred HHHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCcc-------------ccccccccCC--CCCCCc
Q 042817 225 KVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPV-------------DLTKVGVPIP--NSTNAS 289 (922)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------------~~~~l~~~~~--~~~~gs 289 (922)
.+...+ ...........+.....+++.+|+||+++... ....+...+. ....+.
T Consensus 273 ----~l~~~~-------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v 341 (489)
T 3hu3_A 273 ----EIMSKL-------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (489)
T ss_dssp ----HHHTSC-------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCE
T ss_pred ----Hhhhhh-------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCce
Confidence 111111 01111122223334445678899999994210 0111111111 112345
Q ss_pred EEEEEcCChhh-hccc----cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCc-hhHHH
Q 042817 290 KVVFTTRYKEV-CGKM----EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGL-PLAII 358 (922)
Q Consensus 290 ~IivTtR~~~v-~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~ 358 (922)
.||.||..... -..+ .-...+.+...+.++-.+++...+.......... ..++++.+.|. +-.+.
T Consensus 342 ~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~----l~~la~~t~g~s~~dL~ 412 (489)
T 3hu3_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVGADLA 412 (489)
T ss_dssp EEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCC----HHHHHHTCTTCCHHHHH
T ss_pred EEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhh----HHHHHHHccCCcHHHHH
Confidence 66666665532 1111 2234688999999999999988775443222223 34566666664 43344
No 217
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.48 E-value=0.00059 Score=82.11 Aligned_cols=148 Identities=13% Similarity=0.139 Sum_probs=82.7
Q ss_pred cccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCC---c-eEEEEEeCCCCCHHHHHHHHHhh
Q 042817 158 RIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDF---D-IVIWVVVSKDLNLEKVQEDIGKK 233 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F---~-~~~wv~~s~~~~~~~~~~~i~~~ 233 (922)
.++||+.+++++...|......-+.++|++|+|||++|+.+++........+ + ..+.++.
T Consensus 181 ~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---------------- 244 (758)
T 3pxi_A 181 PVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---------------- 244 (758)
T ss_dssp CCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------------
T ss_pred CccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc----------------
Confidence 5899999999999999765555678999999999999999999862111011 1 1112221
Q ss_pred ccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCccccccccccCCCCCCCcEEEEEcCChhh------hcc-ccc
Q 042817 234 IDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPVDLTKVGVPIPNSTNASKVVFTTRYKEV------CGK-MEA 306 (922)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTtR~~~v------~~~-~~~ 306 (922)
+.. +...........+...-..++.+|++|. .......+...+. ....++|.||..... -.. ...
T Consensus 245 -g~~---~~G~~e~~l~~~~~~~~~~~~~iLfiD~--~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rR 316 (758)
T 3pxi_A 245 -GTK---YRGEFEDRLKKVMDEIRQAGNIILFIDA--AIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERR 316 (758)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEECC----------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHS
T ss_pred -ccc---ccchHHHHHHHHHHHHHhcCCEEEEEcC--chhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhh
Confidence 000 0111111222233333346788999992 2222222222222 224567766665542 110 011
Q ss_pred cceeecCCCCHHHHHHHHHHhhC
Q 042817 307 HKKLRVECLTADDAWMLFKVKVG 329 (922)
Q Consensus 307 ~~~~~l~~L~~~ea~~Lf~~~~~ 329 (922)
...+.++..+.++..+++.....
T Consensus 317 f~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 317 FQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp EEEEECCCCCHHHHHHHHHHTTT
T ss_pred CcEEEeCCCCHHHHHHHHHHHHH
Confidence 24689999999999999986654
No 218
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.48 E-value=0.0008 Score=74.20 Aligned_cols=120 Identities=12% Similarity=0.232 Sum_probs=77.8
Q ss_pred cceEEeeecccccccccc--cCCCCceEEEeccC---cccccchhhhccCCCceEEEccCCCCCcccC-ccccCcccCCe
Q 042817 517 GVKRMSLMNNKIRNLSEP--ATCPHLLTLFLQNN---RLSNITANFFQFMPSLKVLNLSNNFSLREFP-PGISKLISLQY 590 (922)
Q Consensus 517 ~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~---~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~ 590 (922)
.++.+.+.. .++.+... .+|.+|+.+.+..+ .++.+....|.++.+|+.+.+..+ +..++ ..+..+.+|+.
T Consensus 65 ~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 65 VLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCE
T ss_pred cCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhccccc
Confidence 366666653 24444333 67888888888765 366777777888888887777654 44444 34667788888
Q ss_pred eeeccCCccccc-hhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeec
Q 042817 591 LNLSSTGIRVLP-EELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLD 643 (922)
Q Consensus 591 L~L~~~~i~~lp-~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~ 643 (922)
+.+..+ +..++ ..+..+.+|+.+.+..+ +..+....+.+ .+|+.+.+..
T Consensus 142 i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~ip~ 191 (394)
T 4gt6_A 142 VTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTG-TALTQIHIPA 191 (394)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-CCCSEEEECT
T ss_pred ccccce-eeeecccceecccccccccccce--eeEeccccccc-cceeEEEECC
Confidence 888643 34443 34667778888887765 45666655543 5677776644
No 219
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.45 E-value=0.00077 Score=75.11 Aligned_cols=171 Identities=15% Similarity=0.177 Sum_probs=95.0
Q ss_pred CcccchhhHHHHHHHHh---ccC---------CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHH
Q 042817 157 PRIIGQESIFDDAWRCM---IEE---------QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLE 224 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L---~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 224 (922)
..++|.+..++++.+.. ... -.+-|.|+|++|+|||+||+++++.. ...| +.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~f---~~is~~~~~~~- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA---NVPF---FHISGSDFVEL- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCCE---EEEEGGGTTTC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCe---eeCCHHHHHHH-
Confidence 35799988776665543 221 12347899999999999999999986 3333 33443322110
Q ss_pred HHHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCcc----------------ccccccccCC--CCC
Q 042817 225 KVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPV----------------DLTKVGVPIP--NST 286 (922)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------------~~~~l~~~~~--~~~ 286 (922)
. ...........+.......+.+|+||+++... .+..+...+. ...
T Consensus 89 ---------~-------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 89 ---------F-------VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp ---------C-------TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred ---------H-------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 0 00011112223334445678999999996521 0111211111 112
Q ss_pred CCcEEEEEcCChhhhcc--cc---ccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCch
Q 042817 287 NASKVVFTTRYKEVCGK--ME---AHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLP 354 (922)
Q Consensus 287 ~gs~IivTtR~~~v~~~--~~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 354 (922)
.+..||.||...+.... .. -...+.++..+.++-.+++...+.......... ...+++.+.|..
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 35567777776654321 11 233778888888887788877665433222222 344677777766
No 220
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.41 E-value=0.00032 Score=69.24 Aligned_cols=113 Identities=22% Similarity=0.219 Sum_probs=61.2
Q ss_pred hHHHHHHHHhccC----CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcc
Q 042817 164 SIFDDAWRCMIEE----QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSE 239 (922)
Q Consensus 164 ~~~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 239 (922)
..++.+.+++... ..+.+.|+|++|+|||+||+++++... .....+++++++ .+...+......
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~---~~~~~~~~~~~~------~~~~~~~~~~~~--- 103 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA---KRNVSSLIVYVP------ELFRELKHSLQD--- 103 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEEEHH------HHHHHHHHC------
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEhH------HHHHHHHHHhcc---
Confidence 3455556665542 116889999999999999999999872 223345666543 444444433211
Q ss_pred cccCCChhhhHHHHHHHhcCCcEEEEEccCCCc--ccccc--ccc-cCCCC-CCCcEEEEEcCC
Q 042817 240 SWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEP--VDLTK--VGV-PIPNS-TNASKVVFTTRY 297 (922)
Q Consensus 240 ~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~--l~~-~~~~~-~~gs~IivTtR~ 297 (922)
..... +.+.+... -+|||||++.. .+|.. +.. .+... ..+.++|+||..
T Consensus 104 ----~~~~~----~~~~~~~~-~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 ----QTMNE----KLDYIKKV-PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp ----CCCHH----HHHHHHHS-SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred ----chHHH----HHHHhcCC-CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 11122 22223322 39999999653 33321 211 11111 234568888874
No 221
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.0017 Score=71.12 Aligned_cols=170 Identities=15% Similarity=0.216 Sum_probs=91.1
Q ss_pred cccchhhHHHHHHHHhcc-------------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHH
Q 042817 158 RIIGQESIFDDAWRCMIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLE 224 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 224 (922)
.+.|.++.+++|.+.+.- ...+-|-++|++|.|||++|+++++.. ...| +.++.+.-.+
T Consensus 173 digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~~---~~v~~~~l~~-- 244 (428)
T 4b4t_K 173 DVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST---KAAF---IRVNGSEFVH-- 244 (428)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH---TCEE---EEEEGGGTCC--
T ss_pred HhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCe---EEEecchhhc--
Confidence 578999888888776531 234568899999999999999999987 3333 3444332110
Q ss_pred HHHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCcc--------c--------cccccccCC--CCC
Q 042817 225 KVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPV--------D--------LTKVGVPIP--NST 286 (922)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~--------~~~l~~~~~--~~~ 286 (922)
.+.......+...+...-...++++++|+++... . +..+...+. ...
T Consensus 245 ---------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~ 309 (428)
T 4b4t_K 245 ---------------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS 309 (428)
T ss_dssp ---------------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS
T ss_pred ---------------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC
Confidence 0111111111122222234678999999986310 0 111111111 123
Q ss_pred CCcEEEEEcCChhhhcc--c---cccceeecCCCCHH-HHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCch
Q 042817 287 NASKVVFTTRYKEVCGK--M---EAHKKLRVECLTAD-DAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLP 354 (922)
Q Consensus 287 ~gs~IivTtR~~~v~~~--~---~~~~~~~l~~L~~~-ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 354 (922)
.+-.||.||...+.... . .-+..+.++.++.. +-..+|.............+ ...+++.+.|.-
T Consensus 310 ~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 310 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp CSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTCC
T ss_pred CCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCCC
Confidence 34567777776554221 1 12346777666544 44556665553332222233 356677777653
No 222
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.39 E-value=0.00036 Score=74.23 Aligned_cols=62 Identities=24% Similarity=0.395 Sum_probs=44.8
Q ss_pred CcccchhhHHHHHHHHhccC---------CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCC
Q 042817 157 PRIIGQESIFDDAWRCMIEE---------QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDL 221 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~ 221 (922)
..++|.+..++.+...+... ....+.|+|++|+|||++|+.+++... ..-...+.++++...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~---~~~~~~~~~~~~~~~ 87 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF---DTEEAMIRIDMTEYM 87 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH---SCGGGEEEEEGGGCC
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc---CCCcceEEeeccccc
Confidence 35789999988888777542 135899999999999999999999872 222234566665443
No 223
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.33 E-value=0.0014 Score=79.09 Aligned_cols=154 Identities=18% Similarity=0.260 Sum_probs=88.9
Q ss_pred cccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccC---CCceEEE-EEeCCCCCHHHHHHHHHhh
Q 042817 158 RIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERH---DFDIVIW-VVVSKDLNLEKVQEDIGKK 233 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---~F~~~~w-v~~s~~~~~~~~~~~i~~~ 233 (922)
.++||+.+++++++.|......-+.|+|.+|+|||++|+.+++....... .....+| ++.+.-
T Consensus 187 ~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------------- 253 (758)
T 1r6b_X 187 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------------- 253 (758)
T ss_dssp CCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---------------
T ss_pred CccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH-------------
Confidence 57999999999999997665566789999999999999999988621110 1122222 111110
Q ss_pred ccCCcccccCCChhhhHHHHHHHhc-CCcEEEEEccCCCcc----------ccccccccCCCCCCCcEEEEEcCChhhhc
Q 042817 234 IDMFSESWKNKSPVEKSCAIFKILS-NKKFVLLLDDMWEPV----------DLTKVGVPIPNSTNASKVVFTTRYKEVCG 302 (922)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~----------~~~~l~~~~~~~~~gs~IivTtR~~~v~~ 302 (922)
+. ... ...........+.+.+. .++.+|++|+++... +...+..++.. ..+.++|.+|...+...
T Consensus 254 ~~--~~~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~~~~~~ 329 (758)
T 1r6b_X 254 LA--GTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSN 329 (758)
T ss_dssp -C--CCC-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECHHHHHC
T ss_pred hc--ccc-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCchHHhh
Confidence 00 000 11223333334444443 467999999997541 11112222222 23456676666543211
Q ss_pred c-------ccccceeecCCCCHHHHHHHHHHhh
Q 042817 303 K-------MEAHKKLRVECLTADDAWMLFKVKV 328 (922)
Q Consensus 303 ~-------~~~~~~~~l~~L~~~ea~~Lf~~~~ 328 (922)
. ......+.++..+.++..+++....
T Consensus 330 ~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 330 IFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 1 1112368899999999988887544
No 224
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.32 E-value=0.00092 Score=70.92 Aligned_cols=46 Identities=26% Similarity=0.281 Sum_probs=37.9
Q ss_pred CcccchhhHHHHHHHHhcc--------------CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 157 PRIIGQESIFDDAWRCMIE--------------EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..++|++..++.+...+.. .....+.|+|++|+|||++|+.+++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999988877653 223567899999999999999999887
No 225
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.30 E-value=0.00088 Score=71.84 Aligned_cols=169 Identities=20% Similarity=0.203 Sum_probs=90.1
Q ss_pred CcccchhhHHHHHHHHhcc-----CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHH
Q 042817 157 PRIIGQESIFDDAWRCMIE-----EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIG 231 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 231 (922)
..++|.+..++.+...+.. .....+.|+|++|+||||||+.+++.. ...|. ..+..-.....++
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l---~~~~~---~~sg~~~~~~~~l----- 93 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL---QTNIH---VTSGPVLVKQGDM----- 93 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH---TCCEE---EEETTTCCSHHHH-----
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEE---EEechHhcCHHHH-----
Confidence 3578988877777666643 234678999999999999999999987 22221 1111100111111
Q ss_pred hhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCcc--ccccccccCCC--------CC----------CCcEE
Q 042817 232 KKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPV--DLTKVGVPIPN--------ST----------NASKV 291 (922)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~~~~--------~~----------~gs~I 291 (922)
. .+...+ .++-++++|++.... ..+.+...+.. .+ +...+
T Consensus 94 ------------------~-~~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 94 ------------------A-AILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp ------------------H-HHHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred ------------------H-HHHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 1 111112 233466677765421 11111000000 00 01122
Q ss_pred E-EEcCChhhhcccc--ccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHH
Q 042817 292 V-FTTRYKEVCGKME--AHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIIT 359 (922)
Q Consensus 292 i-vTtR~~~v~~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 359 (922)
+ .|++...+...+. ....+.+++.+.++-.+++.+.+..... .-..+.+..|++.++|.|-.+..
T Consensus 154 i~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~---~~~~~~~~~ia~~~~G~~R~a~~ 221 (334)
T 1in4_A 154 VGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV---EIEDAAAEMIAKRSRGTPRIAIR 221 (334)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHTSTTCHHHHHH
T ss_pred EEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHhcCCChHHHHH
Confidence 2 3444333321111 1235789999999999999887632221 12256788999999999965543
No 226
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.23 E-value=0.0075 Score=65.90 Aligned_cols=122 Identities=9% Similarity=0.130 Sum_probs=63.9
Q ss_pred cccceEEeeecccccccccc--cCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCccccCcccCCeee
Q 042817 515 WKGVKRMSLMNNKIRNLSEP--ATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPPGISKLISLQYLN 592 (922)
Q Consensus 515 ~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 592 (922)
..+++.+.+.. .++.+... ..|.+|+.+.+..+ ++.+....|.++ +|..+.+.. .++.++...-...+|+.+.
T Consensus 45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF~~~~L~~i~ 119 (379)
T 4h09_A 45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME--RVKKFGDYVFQGTDLDDFE 119 (379)
T ss_dssp GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT--TCCEECTTTTTTCCCSEEE
T ss_pred ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc--eeeEeccceeccCCccccc
Confidence 34566665542 34444332 56777777777543 566666667666 455555543 2444443322233677777
Q ss_pred eccCCccccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecC
Q 042817 593 LSSTGIRVLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDC 644 (922)
Q Consensus 593 L~~~~i~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 644 (922)
+..+ +..+....-.-.+|..+.+..+ +..+....+..+.+|+.+.+...
T Consensus 120 lp~~-~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 120 FPGA-TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp CCTT-CCEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEECTT
T ss_pred CCCc-cccccccccccceeeeeeccce--eeccccchhcccccccccccccc
Confidence 6543 3333322222234555555443 34455445666777777666543
No 227
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.21 E-value=0.00012 Score=68.16 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=29.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeC
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVS 218 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s 218 (922)
.-..++|+|+.|+|||||++.+++... . ..+ .++++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~-~-~g~-~~~~~~~~ 73 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL-E-AGK-NAAYIDAA 73 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH-T-TTC-CEEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-h-cCC-cEEEEcHH
Confidence 446899999999999999999999872 2 222 25666544
No 228
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.93 E-value=0.0014 Score=69.20 Aligned_cols=46 Identities=15% Similarity=0.240 Sum_probs=36.9
Q ss_pred CcccchhhHHHHHHHHhcc--CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 157 PRIIGQESIFDDAWRCMIE--EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..++|+...+.++.+.+.. .....|.|+|.+|+|||++|+++++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 3579999998888887753 233457799999999999999999875
No 229
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.92 E-value=0.012 Score=60.71 Aligned_cols=149 Identities=17% Similarity=0.133 Sum_probs=81.4
Q ss_pred CcccchhhHHHHHHHHhcc-------------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCH
Q 042817 157 PRIIGQESIFDDAWRCMIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNL 223 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 223 (922)
..+.|.++.++++.+.+.. .-.+-+.++|++|.||||||+.++... .. ..+.+..+.-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~---~~---~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES---GL---NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT---TC---EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc---CC---CEEEEEcHHHHhh
Confidence 3577888887777665421 111238999999999999999999986 21 2344443221100
Q ss_pred HHHHHHHHhhccCCcccccCCChhhhHHHHHHHh-cCCcEEEEEccCCCccc---------ccc----ccccCCC--CCC
Q 042817 224 EKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKIL-SNKKFVLLLDDMWEPVD---------LTK----VGVPIPN--STN 287 (922)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~---------~~~----l~~~~~~--~~~ 287 (922)
...........+.+.. ...+.++++|+++.... ... +...+.. ...
T Consensus 84 ------------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~ 145 (274)
T 2x8a_A 84 ------------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQ 145 (274)
T ss_dssp ------------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTT
T ss_pred ------------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccC
Confidence 0000011122222222 34678999999965210 000 1111111 122
Q ss_pred CcEEEEEcCChhhhccc-----cccceeecCCCCHHHHHHHHHHhhC
Q 042817 288 ASKVVFTTRYKEVCGKM-----EAHKKLRVECLTADDAWMLFKVKVG 329 (922)
Q Consensus 288 gs~IivTtR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~~~ 329 (922)
..-++.+|...++.... .-+..+.++..+.++-.++|.....
T Consensus 146 ~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 146 QVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp CEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred CEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 34566677777664321 2345678888888888888877653
No 230
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.90 E-value=0.0096 Score=66.73 Aligned_cols=167 Identities=14% Similarity=0.175 Sum_probs=90.4
Q ss_pred CcccchhhHHHHHHHHh---ccC---------CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHH
Q 042817 157 PRIIGQESIFDDAWRCM---IEE---------QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLE 224 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L---~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 224 (922)
..++|.+..+.++.+.. ... -.+-+.|+|++|+||||||++++... ... .+.++.+.-..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~---~~~---~i~i~g~~~~~-- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RVP---FITASGSDFVE-- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCC---EEEEEGGGGTS--
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---EEEEehhHHHH--
Confidence 46899988766665543 221 11248999999999999999999886 222 34444322100
Q ss_pred HHHHHHHhhccCCcccccCCChhhhHHHHHHHhcC----CcEEEEEccCCCccc----------------cccccccCCC
Q 042817 225 KVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSN----KKFVLLLDDMWEPVD----------------LTKVGVPIPN 284 (922)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~----kr~LlVlDdv~~~~~----------------~~~l~~~~~~ 284 (922)
.........++..++. .+.++++|+++.... +..+...+..
T Consensus 103 -------------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg 163 (499)
T 2dhr_A 103 -------------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 163 (499)
T ss_dssp -------------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGG
T ss_pred -------------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcc
Confidence 0011122233344432 357999999954210 1112111211
Q ss_pred --CCCCcEEEEEcCChhhhcc--c---cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCch
Q 042817 285 --STNASKVVFTTRYKEVCGK--M---EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLP 354 (922)
Q Consensus 285 --~~~gs~IivTtR~~~v~~~--~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 354 (922)
...+..|+.||...++... . .-+..+.++..+.++-.+++...+.......... ...|++.+.|..
T Consensus 164 ~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 164 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp CCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSST----THHHHTTSCSCC
T ss_pred cccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHH----HHHHHHhcCCCC
Confidence 1233456666766655321 1 1235778888888888888876654322111111 344666666654
No 231
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.86 E-value=0.0019 Score=76.36 Aligned_cols=170 Identities=15% Similarity=0.150 Sum_probs=95.0
Q ss_pred cccchhhHHHHHHHHhc----c---------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHH
Q 042817 158 RIIGQESIFDDAWRCMI----E---------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLE 224 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 224 (922)
.+.|.++.+++|.+.+. . ...+-|-++|++|.|||+||+++++.. ..+| +.|+.+
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~~---~~v~~~------ 272 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFF---FLINGP------ 272 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCEE---EEEEHH------
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCeE---EEEEhH------
Confidence 46788877777766542 1 134578899999999999999999886 3332 344322
Q ss_pred HHHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCccc-------------cccccccCC--CCCCCc
Q 042817 225 KVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPVD-------------LTKVGVPIP--NSTNAS 289 (922)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------------~~~l~~~~~--~~~~gs 289 (922)
++... +.......+...+....+..+.+|+||+++.... ...+...+. ....+-
T Consensus 273 ----~l~sk-------~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V 341 (806)
T 3cf2_A 273 ----EIMSK-------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp ----HHHSS-------CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCE
T ss_pred ----Hhhcc-------cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCE
Confidence 11110 0111122222233333456799999999965210 011111110 112234
Q ss_pred EEEEEcCChhhhcc-c----cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCch
Q 042817 290 KVVFTTRYKEVCGK-M----EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLP 354 (922)
Q Consensus 290 ~IivTtR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 354 (922)
.||.||...+.... + .-...+.++..+.++-.++|...........+.+ ...|++++.|.-
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCC
T ss_pred EEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCC
Confidence 56667765544221 1 1245788888888888888887664433222223 455777787764
No 232
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.85 E-value=0.0043 Score=69.53 Aligned_cols=46 Identities=24% Similarity=0.297 Sum_probs=35.7
Q ss_pred CcccchhhHHHHHHHHh---ccC--CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 157 PRIIGQESIFDDAWRCM---IEE--QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L---~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..++|.+..++.+..++ ..+ ..+-+-++|++|+|||++|+++++..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 57899998877655443 332 22468899999999999999999987
No 233
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.83 E-value=0.0063 Score=69.61 Aligned_cols=46 Identities=28% Similarity=0.349 Sum_probs=35.6
Q ss_pred CcccchhhHHHHHHHHhcc------CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 157 PRIIGQESIFDDAWRCMIE------EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..++|.+.....+.+.+.- .....+.++|++|+||||||+.++...
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578888877776554321 234589999999999999999999987
No 234
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.81 E-value=0.0014 Score=78.73 Aligned_cols=60 Identities=27% Similarity=0.421 Sum_probs=43.5
Q ss_pred CcccchhhHHHHHHHHhccC---------CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCC
Q 042817 157 PRIIGQESIFDDAWRCMIEE---------QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSK 219 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 219 (922)
..++|.+..++.+...+... ....+.++|++|+|||++|+++++... ..-...+.++++.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~---~~~~~~i~i~~s~ 559 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF---GDEESMIRIDMSE 559 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH---SCTTCEEEEEGGG
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc---CCCcceEEEechh
Confidence 46899999998888877531 123689999999999999999999862 2223345565543
No 235
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.76 E-value=0.0038 Score=75.02 Aligned_cols=150 Identities=13% Similarity=0.111 Sum_probs=83.9
Q ss_pred cccchhhHHHHHHHHhcc-------------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHH
Q 042817 158 RIIGQESIFDDAWRCMIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLE 224 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 224 (922)
.++|.+..++++.+++.. .....|.|+|++|+||||||+++++.. ...| +.++.+
T Consensus 205 di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l---~~~~---i~v~~~------ 272 (806)
T 1ypw_A 205 DVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFF---FLINGP------ 272 (806)
T ss_dssp GCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT---TCEE---EEEEHH------
T ss_pred HhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCcE---EEEEch------
Confidence 578998888888777642 233578999999999999999998876 2222 333321
Q ss_pred HHHHHHHhhccCCcccccCCChhhhHHHHHHHhcCCcEEEEEccCCCccc----------------cccccccCCCCCCC
Q 042817 225 KVQEDIGKKIDMFSESWKNKSPVEKSCAIFKILSNKKFVLLLDDMWEPVD----------------LTKVGVPIPNSTNA 288 (922)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----------------~~~l~~~~~~~~~g 288 (922)
++.. . ............+.......+.++++|+++.... +..+...+. ...+
T Consensus 273 ----~l~~---~----~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~~~ 340 (806)
T 1ypw_A 273 ----EIMS---K----LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRAH 340 (806)
T ss_dssp ----HHSS---S----STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TTSC
T ss_pred ----Hhhh---h----hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-cccc
Confidence 1110 0 0011111222233333345678999999953210 111111111 1123
Q ss_pred cEEEEEcCChhhhc-cc----cccceeecCCCCHHHHHHHHHHhhCCC
Q 042817 289 SKVVFTTRYKEVCG-KM----EAHKKLRVECLTADDAWMLFKVKVGED 331 (922)
Q Consensus 289 s~IivTtR~~~v~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 331 (922)
..||.||...+... .+ .-...+.+...+.++-.+++...+...
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~ 388 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM 388 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTS
T ss_pred EEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcC
Confidence 45666666543221 11 122457788888999999988766443
No 236
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.69 E-value=0.0071 Score=62.84 Aligned_cols=170 Identities=14% Similarity=0.173 Sum_probs=87.4
Q ss_pred CcccchhhHHHHHHHHhc---c---------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHH
Q 042817 157 PRIIGQESIFDDAWRCMI---E---------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLE 224 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 224 (922)
..++|.+..++++.+... . .-.+-+.|+|++|+||||||+.++... .. ..+.++..
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~---~~---~~i~~~~~------ 107 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RV---PFITASGS------ 107 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT---TC---CEEEEEHH------
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc---CC---CEEEecHH------
Confidence 467898877666554432 1 011238999999999999999999886 22 23333321
Q ss_pred HHHHHHHhhccCCcccccCCChhhhHHHHHHHh-cCCcEEEEEccCCCcc------------c----cccccccCCCCC-
Q 042817 225 KVQEDIGKKIDMFSESWKNKSPVEKSCAIFKIL-SNKKFVLLLDDMWEPV------------D----LTKVGVPIPNST- 286 (922)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~------------~----~~~l~~~~~~~~- 286 (922)
. +..... .........+.+.. ...+.++|+|+++... . ...+...+..+.
T Consensus 108 ~----~~~~~~--------~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~ 175 (278)
T 1iy2_A 108 D----FVEMFV--------GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 175 (278)
T ss_dssp H----HHHSTT--------THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT
T ss_pred H----HHHHHh--------hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC
Confidence 1 111000 00111112222222 2456899999994210 0 111211122111
Q ss_pred -CCcEEEEEcCChhhhcc-----ccccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCch
Q 042817 287 -NASKVVFTTRYKEVCGK-----MEAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLP 354 (922)
Q Consensus 287 -~gs~IivTtR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 354 (922)
....++.||...++... ..-...+.++..+.++-.+++...+.......... ...+++.+.|..
T Consensus 176 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 176 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccC----HHHHHHHcCCCC
Confidence 12345556666555321 12345788888888888888876654332221122 334666666654
No 237
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.67 E-value=0.013 Score=59.91 Aligned_cols=169 Identities=14% Similarity=0.185 Sum_probs=86.3
Q ss_pred CcccchhhHHHHHHHHhc---c---------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHH
Q 042817 157 PRIIGQESIFDDAWRCMI---E---------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLE 224 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 224 (922)
..++|.+..+.++.+... . .-.+-+.|+|++|+||||||+.++... .. ..+.++..
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~---~~---~~i~~~~~------ 83 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RV---PFITASGS------ 83 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT---TC---CEEEEEHH------
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CC---CEEEeeHH------
Confidence 467888876665544321 1 011238999999999999999999886 22 22333321
Q ss_pred HHHHHHHhhccCCcccccCCChhhhHHHHHHHh-cCCcEEEEEccCCCcc------------c----cccccccCCCC--
Q 042817 225 KVQEDIGKKIDMFSESWKNKSPVEKSCAIFKIL-SNKKFVLLLDDMWEPV------------D----LTKVGVPIPNS-- 285 (922)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~------------~----~~~l~~~~~~~-- 285 (922)
. +.... ..........+.+.. ...+.++++|+++... . ...+...+..+
T Consensus 84 ~----~~~~~--------~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~ 151 (254)
T 1ixz_A 84 D----FVEMF--------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 151 (254)
T ss_dssp H----HHHSC--------TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT
T ss_pred H----HHHHH--------hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC
Confidence 1 11100 000111122233333 2456899999994310 0 11121111111
Q ss_pred CCCcEEEEEcCChhhhccc-----cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCc
Q 042817 286 TNASKVVFTTRYKEVCGKM-----EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGL 353 (922)
Q Consensus 286 ~~gs~IivTtR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 353 (922)
....-++.||...++.... .-...+.++..+.++-.+++...+.......... ...+++.+.|.
T Consensus 152 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~ 220 (254)
T 1ixz_A 152 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGF 220 (254)
T ss_dssp TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTC
T ss_pred CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccC----HHHHHHHcCCC
Confidence 1223455566666553211 2244678888888888888876654322122222 23466666664
No 238
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.46 E-value=0.0016 Score=67.59 Aligned_cols=68 Identities=21% Similarity=0.285 Sum_probs=44.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEe--CCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHH
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVV--SKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKI 256 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 256 (922)
+++.|+|++|+||||||.+++... .. .++|++. ... +.. ...+.++....+.+.
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~-G~-----~VlyIs~~~eE~-------------v~~-----~~~~le~~l~~i~~~ 179 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEAL-GG-----KDKYATVRFGEP-------------LSG-----YNTDFNVFVDDIARA 179 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHH-HT-----TSCCEEEEBSCS-------------STT-----CBCCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhC-CC-----CEEEEEecchhh-------------hhh-----hhcCHHHHHHHHHHH
Confidence 567899999999999999998762 11 2345555 222 000 013455556666777
Q ss_pred hcCCcEEEEEccCCC
Q 042817 257 LSNKKFVLLLDDMWE 271 (922)
Q Consensus 257 l~~kr~LlVlDdv~~ 271 (922)
+...+ +||+|++..
T Consensus 180 l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 180 MLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHCS-EEEEECCTT
T ss_pred HhhCC-EEEEecccc
Confidence 76666 999999854
No 239
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.42 E-value=0.0083 Score=59.75 Aligned_cols=87 Identities=17% Similarity=0.174 Sum_probs=52.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCccc-------ccCCCh---h
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSES-------WKNKSP---V 247 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~---~ 247 (922)
-.++.|+|.+|+||||||..++. . . -..++|++.....+...+.+ +.+..+...+. ...... .
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~-~----~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-L-S----GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-H-H----CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-H-c----CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 36999999999999999999987 3 1 13688888777666655543 33332221000 011111 2
Q ss_pred hhHHHHHHHhcCCcEEEEEccCCC
Q 042817 248 EKSCAIFKILSNKKFVLLLDDMWE 271 (922)
Q Consensus 248 ~~~~~l~~~l~~kr~LlVlDdv~~ 271 (922)
+....++..++.+.-+||+|.+..
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcHH
Confidence 234444444444577999998743
No 240
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.38 E-value=0.0031 Score=66.07 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+.+.++|++|+|||+||+++++..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999987
No 241
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.34 E-value=0.0095 Score=63.54 Aligned_cols=86 Identities=13% Similarity=0.121 Sum_probs=56.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCccc---ccCCChhhhHHHHH
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSES---WKNKSPVEKSCAIF 254 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~ 254 (922)
-+++.|+|++|+||||||.+++.... .. -..++|++....++.. .++.++...+. ....+.++....+.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~-~~--gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQ-KM--GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHH-HT--TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-hc--CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 46999999999999999999998862 11 1347888877776654 34444433221 12334555555555
Q ss_pred HHhc-CCcEEEEEccCCC
Q 042817 255 KILS-NKKFVLLLDDMWE 271 (922)
Q Consensus 255 ~~l~-~kr~LlVlDdv~~ 271 (922)
..++ .+.-++|+|.+-.
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 5554 4556899999854
No 242
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.27 E-value=0.011 Score=59.99 Aligned_cols=92 Identities=11% Similarity=0.125 Sum_probs=54.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhccC----CCceEEEEEeCCCCCHHHHHHHHHhhccCCcc----c---ccCCCh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQERH----DFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSE----S---WKNKSP 246 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----~---~~~~~~ 246 (922)
-.++.|+|++|+||||||+.++... .... .-..++|++....+....+. ++++.++...+ . ....+.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~-~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTC-QLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHT-TSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH-hCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 3599999999999999999998863 1111 23578999877765555443 33444443210 0 011222
Q ss_pred hh---hHHHHHHHhc-CCcEEEEEccCCC
Q 042817 247 VE---KSCAIFKILS-NKKFVLLLDDMWE 271 (922)
Q Consensus 247 ~~---~~~~l~~~l~-~kr~LlVlDdv~~ 271 (922)
.+ ....+.+.+. .+.-+||+|.+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 22 2233444443 4677999998743
No 243
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.25 E-value=0.0032 Score=60.41 Aligned_cols=118 Identities=19% Similarity=0.174 Sum_probs=62.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCC---CCCHHHHHHHHHhhccCCccccc--CC-------Ch
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSK---DLNLEKVQEDIGKKIDMFSESWK--NK-------SP 246 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~---~~~~~~~~~~i~~~l~~~~~~~~--~~-------~~ 246 (922)
..|-|++..|.||||.|-..+-+.. ...+ .+.++..-. ..+...++..+.-.+......+. .. ..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~--g~G~-rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAV--GHGK-NVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHH--HTTC-CEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH--HCCC-eEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 4666777777999999988887762 2333 455554333 22333444443100000001111 10 11
Q ss_pred hhhHHHHHHHhcCCcE-EEEEccCCC-----ccccccccccCCCCCCCcEEEEEcCChh
Q 042817 247 VEKSCAIFKILSNKKF-VLLLDDMWE-----PVDLTKVGVPIPNSTNASKVVFTTRYKE 299 (922)
Q Consensus 247 ~~~~~~l~~~l~~kr~-LlVlDdv~~-----~~~~~~l~~~~~~~~~gs~IivTtR~~~ 299 (922)
.......++.+.+.+| |||||++-. ..+.+++...+........||+|+|...
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 2223445566666566 999999843 2233333333334445678999999863
No 244
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.17 E-value=0.0061 Score=64.22 Aligned_cols=41 Identities=24% Similarity=0.366 Sum_probs=30.8
Q ss_pred hhhHHHHHHHHhccC---CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 162 QESIFDDAWRCMIEE---QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 162 r~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+...++.+.+++... ....+.|+|++|+|||+||+++++..
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 344455555666541 24678899999999999999999987
No 245
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.12 E-value=0.021 Score=60.61 Aligned_cols=92 Identities=13% Similarity=0.192 Sum_probs=56.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcc---CCCceEEEEEeCCCCCHHHHHHHHHhhccCCccc-------ccCCChh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQER---HDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSES-------WKNKSPV 247 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~ 247 (922)
-.++.|+|.+|+||||+|.+++....... ..-..++|++....++...+.+ +++.++...+. ....+.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHH
Confidence 36999999999999999999987751110 0124789999888777776653 34555432210 0112222
Q ss_pred ---hhHHHHHHHhc--CCcEEEEEccCC
Q 042817 248 ---EKSCAIFKILS--NKKFVLLLDDMW 270 (922)
Q Consensus 248 ---~~~~~l~~~l~--~kr~LlVlDdv~ 270 (922)
+....+...++ .+.-+||+|.+.
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 23344555554 456688999873
No 246
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.12 E-value=0.0096 Score=72.44 Aligned_cols=45 Identities=31% Similarity=0.502 Sum_probs=37.0
Q ss_pred cccchhhHHHHHHHHhccC---------CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 158 RIIGQESIFDDAWRCMIEE---------QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.++|.+..++.+...+... ....+.|+|++|+|||++|+++++..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5799999888887776431 23578899999999999999999987
No 247
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.05 E-value=0.0074 Score=72.60 Aligned_cols=57 Identities=25% Similarity=0.299 Sum_probs=42.3
Q ss_pred CcccchhhHHHHHHHHhcc---------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCC
Q 042817 157 PRIIGQESIFDDAWRCMIE---------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSK 219 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 219 (922)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++.. . ...+.++++.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l---~---~~~~~i~~s~ 523 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---G---IELLRFDMSE 523 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH---T---CEEEEEEGGG
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh---c---CCEEEEechh
Confidence 4688999998888777642 123478999999999999999999886 2 2345555544
No 248
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.05 E-value=0.027 Score=60.23 Aligned_cols=92 Identities=14% Similarity=0.175 Sum_probs=56.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccC----CCceEEEEEeCCCCCHHHHHHHHHhhccCCcc----c---ccCCC
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERH----DFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSE----S---WKNKS 245 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----~---~~~~~ 245 (922)
.-.++.|+|.+|+||||||..++... .... .-..++|++....++...+.. +++.++...+ . ....+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~-~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTA-QLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHT-TSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCC
Confidence 44699999999999999999998874 1111 234789999888777766543 3444443211 0 01111
Q ss_pred hh---hhHHHHHHHhc---CCcEEEEEccCC
Q 042817 246 PV---EKSCAIFKILS---NKKFVLLLDDMW 270 (922)
Q Consensus 246 ~~---~~~~~l~~~l~---~kr~LlVlDdv~ 270 (922)
.+ +....+.+.++ .+.-+||+|.+.
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~ 229 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIM 229 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSG
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechH
Confidence 22 23333444443 456688888873
No 249
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.04 E-value=0.003 Score=62.60 Aligned_cols=114 Identities=18% Similarity=0.002 Sum_probs=62.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKI 256 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 256 (922)
.-.++.|+|..|.||||++..+.++. .. ... .++.+....+. . ...+|++.++............+....+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~-~~-~g~-kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRL-EY-ADV-KYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHH-HH-TTC-CEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHH-Hh-cCC-EEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 34689999999999999998888887 22 222 34444433321 1 2234555555433222222333344444444
Q ss_pred hcCCcE-EEEEccCCCc--cccccccccCCCCCCCcEEEEEcCChh
Q 042817 257 LSNKKF-VLLLDDMWEP--VDLTKVGVPIPNSTNASKVVFTTRYKE 299 (922)
Q Consensus 257 l~~kr~-LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~~~ 299 (922)
+.+.++ +||+|.+... ..++.+. .+.+ .|-.||+|-++.+
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~-~L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVAN-ILAE--NGFVVIISGLDKN 127 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHH-HHHH--TTCEEEEECCSBC
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHH-HHHh--CCCeEEEEecccc
Confidence 434444 9999998542 2222221 1111 2678999988654
No 250
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.03 E-value=0.017 Score=61.84 Aligned_cols=86 Identities=16% Similarity=0.172 Sum_probs=54.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCccc---ccCCChhhhHHHHH
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSES---WKNKSPVEKSCAIF 254 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~ 254 (922)
-+++.|+|.+|+||||||.+++..... . =..++|++....++.. .++.++...+. ....+.++....+.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~-~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQA-A--GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH-T--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-C--CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 468999999999999999999877621 1 2368899988766643 24444433221 11233445444444
Q ss_pred HHhc-CCcEEEEEccCCC
Q 042817 255 KILS-NKKFVLLLDDMWE 271 (922)
Q Consensus 255 ~~l~-~kr~LlVlDdv~~ 271 (922)
...+ .+.-+||+|.+..
T Consensus 133 ~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHTTTCCSEEEEECGGG
T ss_pred HHHhcCCCCEEEEcChHh
Confidence 4443 3466999999843
No 251
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.01 E-value=0.029 Score=57.94 Aligned_cols=87 Identities=9% Similarity=0.058 Sum_probs=55.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccc---cCCChhhh-HHHHHH
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESW---KNKSPVEK-SCAIFK 255 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~-~~~l~~ 255 (922)
++-|+|++|+||||||.+++.... ....=..++||+....++.. .++.++...+.. ...+.++. ...+..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~-~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYM-RQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHH-HHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 789999999999999988877762 22112468999988877754 256666543321 22334444 332222
Q ss_pred H--h-cCCcEEEEEccCCCc
Q 042817 256 I--L-SNKKFVLLLDDMWEP 272 (922)
Q Consensus 256 ~--l-~~kr~LlVlDdv~~~ 272 (922)
. + +.+.-++|+|-|...
T Consensus 104 l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTC
T ss_pred HHHhhccCceEEEEeccccc
Confidence 2 2 356789999998543
No 252
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.91 E-value=0.022 Score=61.25 Aligned_cols=86 Identities=13% Similarity=0.124 Sum_probs=55.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCccc---ccCCChhhhHHHHH
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSES---WKNKSPVEKSCAIF 254 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~ 254 (922)
-+++.|+|.+|+||||||.+++.... .. -..++|++....++.. .++.++...+. ....+.++....+.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~-~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQ-KA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH-HT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHH-HC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 35889999999999999999887762 12 2368999988776644 23444433221 12234555555565
Q ss_pred HHhcC-CcEEEEEccCCC
Q 042817 255 KILSN-KKFVLLLDDMWE 271 (922)
Q Consensus 255 ~~l~~-kr~LlVlDdv~~ 271 (922)
...+. ..-+||+|.+..
T Consensus 146 ~l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHHTTTCCSEEEEECTTT
T ss_pred HHHhcCCCCEEEEeChHH
Confidence 55543 455999999843
No 253
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.88 E-value=0.018 Score=61.71 Aligned_cols=86 Identities=15% Similarity=0.127 Sum_probs=53.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccc---cCCChhhhHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESW---KNKSPVEKSCAI 253 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 253 (922)
.-+++.|+|.+|+||||||.+++.... .. -..++|++....++... +..++...+.+ ...+.++....+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~-~~--g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ-RE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH-HT--TCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HC--CCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHH
Confidence 346899999999999999999887762 22 23688999887766432 34444332211 122334444444
Q ss_pred HHHhc-CCcEEEEEccCC
Q 042817 254 FKILS-NKKFVLLLDDMW 270 (922)
Q Consensus 254 ~~~l~-~kr~LlVlDdv~ 270 (922)
....+ .+.-+||+|.+.
T Consensus 134 ~~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHHTCCSEEEEECGG
T ss_pred HHHHhccCCCEEEEcCHH
Confidence 44332 445589999873
No 254
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.80 E-value=0.0066 Score=64.33 Aligned_cols=52 Identities=12% Similarity=0.119 Sum_probs=34.4
Q ss_pred HHHHHhcc-CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCC
Q 042817 168 DAWRCMIE-EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKD 220 (922)
Q Consensus 168 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~ 220 (922)
++++.+.. ..-..++|+|.+|+|||||++.+.+........+++ +++-+.+.
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER 215 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDER 215 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSC
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCC
Confidence 44555543 344689999999999999999998876222233443 34656644
No 255
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.75 E-value=0.0028 Score=58.34 Aligned_cols=45 Identities=13% Similarity=0.164 Sum_probs=33.7
Q ss_pred cccchhhHHHHHHHHhcc--CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 158 RIIGQESIFDDAWRCMIE--EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.++|++..++++.+.+.. ....-|.|+|.+|+|||++|+++++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 578999888888887653 233457799999999999999988765
No 256
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.68 E-value=0.031 Score=60.89 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=72.5
Q ss_pred cCCCCceEEEeccCcccccchhhhccCCCceEEEccCCCCCcccCc-cccCcccCCeeeeccCCccccch-hhccCCCCC
Q 042817 535 ATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNNFSLREFPP-GISKLISLQYLNLSSTGIRVLPE-ELKALKDLS 612 (922)
Q Consensus 535 ~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~lp~-~l~~l~~L~ 612 (922)
..|..|+.+.+..+ ++.+....|.++.+|+.+.+..+ +..++. .+.++.+|+.+.+.++.++.++. .+.++.+|+
T Consensus 237 ~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 237 YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred cCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 56677777777655 55666667777788888877653 455543 46677888888887777777754 467778888
Q ss_pred EEeCCCCccccccChhhhCCCCCCCEEEee
Q 042817 613 YLNMERTSFVRRIPRQLISNFPLLRVLRML 642 (922)
Q Consensus 613 ~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~ 642 (922)
.+.+..+ ++.++...+.++++|+.+.+.
T Consensus 314 ~i~lp~~--l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 314 SVTLPTA--LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EEECCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred EEEcCcc--ccEEHHHHhhCCCCCCEEEEC
Confidence 8888654 567777677777788777664
No 257
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.68 E-value=0.011 Score=58.00 Aligned_cols=41 Identities=27% Similarity=0.352 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHhcc---CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 162 QESIFDDAWRCMIE---EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 162 r~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
|++.++++.+.+.. ....+|+|+|..|.||||+++.+....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 55667777777754 345799999999999999999998876
No 258
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.56 E-value=0.012 Score=60.74 Aligned_cols=60 Identities=15% Similarity=0.178 Sum_probs=40.1
Q ss_pred cccchhhHHHHHHHHhcc--CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCC
Q 042817 158 RIIGQESIFDDAWRCMIE--EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKD 220 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~ 220 (922)
.++|++..+.++.+.+.. .....|.|+|.+|+|||++|+.+++... +.. ...+.++++..
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~--~~~-~~~~~v~~~~~ 68 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS--RWQ-GPFISLNCAAL 68 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST--TTT-SCEEEEEGGGS
T ss_pred cceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC--ccC-CCeEEEecCCC
Confidence 578999888888776643 2235677999999999999999998762 111 22455666543
No 259
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.43 E-value=0.033 Score=59.18 Aligned_cols=93 Identities=11% Similarity=0.154 Sum_probs=56.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcc---------CC--C--ceEEEEEeCCCCCHHHHHHHHHhhccCCccc---
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQER---------HD--F--DIVIWVVVSKDLNLEKVQEDIGKKIDMFSES--- 240 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~~--F--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~--- 240 (922)
.-.++.|+|.+|+||||+|.+++....... .. . ..++|++....++..++.+. ++.++...+.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcCCCHHHHhc
Confidence 346999999999999999999887631100 11 1 57899998888777766543 4444432210
Q ss_pred ----ccCCChh---hhHHHHHHHhcC--CcEEEEEccCC
Q 042817 241 ----WKNKSPV---EKSCAIFKILSN--KKFVLLLDDMW 270 (922)
Q Consensus 241 ----~~~~~~~---~~~~~l~~~l~~--kr~LlVlDdv~ 270 (922)
....+.+ +....+.+.++. +.-+||+|.+.
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 0112222 233345555543 45588888873
No 260
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.37 E-value=0.035 Score=55.64 Aligned_cols=46 Identities=24% Similarity=0.289 Sum_probs=31.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHH
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQED 229 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 229 (922)
.+++|+|++|+|||||++.++..... .. ..++|+.... ....+...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~-~~--~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLR-DG--DPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHH-HT--CCEEEEESSS--CHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHH-CC--CeEEEEEccc--CHHHHHHH
Confidence 58999999999999999999876521 11 2466665433 34444443
No 261
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.37 E-value=0.072 Score=58.29 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=23.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...+|.++|.+|+||||++..++...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998877
No 262
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.36 E-value=0.013 Score=57.69 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=31.0
Q ss_pred hHHHHHHHHhcc--CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 164 SIFDDAWRCMIE--EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 164 ~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+.+++|.+.+.. ....+|+|+|+.|.|||||++.+....
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345566666553 355799999999999999999998887
No 263
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.28 E-value=0.0023 Score=61.73 Aligned_cols=24 Identities=25% Similarity=0.138 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.++.|+|+.|+||||+|..++.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999997777665
No 264
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.20 E-value=0.064 Score=57.46 Aligned_cols=162 Identities=8% Similarity=-0.054 Sum_probs=95.7
Q ss_pred HHhccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhH
Q 042817 171 RCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKS 250 (922)
Q Consensus 171 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 250 (922)
+.+.+.-.++..++|..|.||++.|+.+.+... ...|+....+.+....++.++...+..
T Consensus 11 ~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------ 70 (343)
T 1jr3_D 11 AQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAA--AQGFEEHHTFSIDPNTDWNAIFSLCQA------------------ 70 (343)
T ss_dssp HHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHH--HHTCCEEEEEECCTTCCHHHHHHHHHH------------------
T ss_pred HHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHH--hCCCCeeEEEEecCCCCHHHHHHHhcC------------------
Confidence 334333456899999999999999999988762 223432222223333334333322210
Q ss_pred HHHHHHhcCCcEEEEEccCCC-c--cccccccccCCCCCCCcEEEEEcCC-------hhhhccc-cccceeecCCCCHHH
Q 042817 251 CAIFKILSNKKFVLLLDDMWE-P--VDLTKVGVPIPNSTNASKVVFTTRY-------KEVCGKM-EAHKKLRVECLTADD 319 (922)
Q Consensus 251 ~~l~~~l~~kr~LlVlDdv~~-~--~~~~~l~~~~~~~~~gs~IivTtR~-------~~v~~~~-~~~~~~~l~~L~~~e 319 (922)
.-+-+++-++|+|+++. . ..++.+...+..-.+++.+|++|.. ..+...+ .....++..+++.++
T Consensus 71 ----~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~ 146 (343)
T 1jr3_D 71 ----MSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQ 146 (343)
T ss_dssp ----HHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTH
T ss_pred ----cCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHH
Confidence 11235677889999865 2 3444454444333456777766543 2233322 234578999999999
Q ss_pred HHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCchhHHHH
Q 042817 320 AWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGLPLAIIT 359 (922)
Q Consensus 320 a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 359 (922)
....+...+...... --.+.+..+++.++|.+.++..
T Consensus 147 l~~~l~~~~~~~g~~---i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 147 LPRWVAARAKQLNLE---LDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHHHHHHHTTCE---ECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCC---CCHHHHHHHHHHhchHHHHHHH
Confidence 888887766332211 1145677888999998877765
No 265
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.15 E-value=0.072 Score=53.20 Aligned_cols=47 Identities=28% Similarity=0.351 Sum_probs=32.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhh--cc-CCCceEEEEEeCCCCCHH
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQ--ER-HDFDIVIWVVVSKDLNLE 224 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~-~~F~~~~wv~~s~~~~~~ 224 (922)
-.+++|+|++|+|||||++.++..... .. ..-..++|+.........
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~ 74 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 74 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHH
Confidence 369999999999999999999875411 00 123468888766544433
No 266
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.12 E-value=0.078 Score=57.61 Aligned_cols=91 Identities=11% Similarity=0.138 Sum_probs=52.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhc---cCCCceEEEEEeCCCCCHHHHHHHHHhhccCCccc-------ccCCChh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQE---RHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSES-------WKNKSPV 247 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~ 247 (922)
-.++.|+|.+|+|||||+..++-..... ...-..++|++....+....+. .+++.++..... ....+..
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCChHhHhhcEEEeccCChH
Confidence 3699999999999999999876443110 1123568999877766655543 355555543210 0111222
Q ss_pred ---hhHHHHHHHh-cCCcEEEEEccC
Q 042817 248 ---EKSCAIFKIL-SNKKFVLLLDDM 269 (922)
Q Consensus 248 ---~~~~~l~~~l-~~kr~LlVlDdv 269 (922)
+....+...+ ..+.-+||+|.+
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~ 282 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSV 282 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecch
Confidence 2222333333 246778889986
No 267
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.06 E-value=0.013 Score=55.74 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+|+|.|++|+||||+|+.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999886
No 268
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.97 E-value=0.014 Score=55.94 Aligned_cols=24 Identities=29% Similarity=0.482 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+|.|+|++|+||||+|+.+....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999999886
No 269
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.96 E-value=0.027 Score=59.41 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=33.9
Q ss_pred cchhhHHHHHHHHhc----cCCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 160 IGQESIFDDAWRCMI----EEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 160 vGr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
|+.+..++++++.+. .+....|.|+|++|+||||+++.++...
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 555666777776664 3456679999999999999999998876
No 270
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.91 E-value=0.12 Score=56.59 Aligned_cols=26 Identities=38% Similarity=0.281 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...+|.++|.+|+||||++..++...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998887
No 271
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.90 E-value=0.019 Score=61.34 Aligned_cols=44 Identities=23% Similarity=0.330 Sum_probs=37.7
Q ss_pred CcccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 157 PRIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..++|++..++.+...+..+ .-+.++|++|+|||++|+.+++..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh
Confidence 46799999999888887664 357799999999999999999876
No 272
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.90 E-value=0.035 Score=65.60 Aligned_cols=169 Identities=15% Similarity=0.254 Sum_probs=76.9
Q ss_pred CcccchhhHHHHHHHHhcc-------------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCH
Q 042817 157 PRIIGQESIFDDAWRCMIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNL 223 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 223 (922)
..+.|.++.++++.+.+.- ...+-|-++|++|.|||.+|+++++.. ...| +.++ .
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~~f-----~~v~----~ 544 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QANF-----ISIK----G 544 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT---TCEE-----EECC----H
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh---CCce-----EEec----c
Confidence 3567888888777665431 123457799999999999999999987 2222 2222 1
Q ss_pred HHHHHHHHhhccCCcccccCCChhhhHHHHHHHh-cCCcEEEEEccCCCcc--------c--------cccccccCCC--
Q 042817 224 EKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKIL-SNKKFVLLLDDMWEPV--------D--------LTKVGVPIPN-- 284 (922)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~--------~--------~~~l~~~~~~-- 284 (922)
.+ ++.. +....+.. ...+.+.. +..++.|+||+++... + ...+...+..
T Consensus 545 ~~----l~s~-------~vGese~~-vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~ 612 (806)
T 3cf2_A 545 PE----LLTM-------WFGESEAN-VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp HH----HHTT-------TCSSCHHH-HHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC
T ss_pred ch----hhcc-------ccchHHHH-HHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC
Confidence 11 2111 12223333 33344433 4578999999996421 0 1111111111
Q ss_pred CCCCcEEEEEcCChhhhcc--c---cccceeecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHhCCc
Q 042817 285 STNASKVVFTTRYKEVCGK--M---EAHKKLRVECLTADDAWMLFKVKVGEDTIDSHPEIPKHAQLVAKECGGL 353 (922)
Q Consensus 285 ~~~gs~IivTtR~~~v~~~--~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 353 (922)
...+--||-||...+.... . .-+..+.++..+.++-.++|+............++ ..+++.+.|.
T Consensus 613 ~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl----~~la~~t~g~ 682 (806)
T 3cf2_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGF 682 (806)
T ss_dssp SSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC-----------------
T ss_pred CCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHhCCCC
Confidence 1123233445554443211 1 22456777666666666777665543332222233 3455555554
No 273
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.88 E-value=0.081 Score=55.08 Aligned_cols=87 Identities=18% Similarity=0.197 Sum_probs=47.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCC-CCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSK-DLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFK 255 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 255 (922)
...+++|+|.+|+||||++..++.......+ ..+..+.... .....+.+....+..+.+.. ...+...+...+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G--~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~~~~~~~l~~al~- 178 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH--KKIAFITTDTYRIAAVEQLKTYAELLQAPLE--VCYTKEEFQQAKE- 178 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC--CCEEEEECCCSSTTHHHHHHHHHTTTTCCCC--BCSSHHHHHHHHH-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC--CEEEEEecCcccchHHHHHHHHHHhcCCCeE--ecCCHHHHHHHHH-
Confidence 3469999999999999999999887721122 2355555432 12233334444444443321 1122333333333
Q ss_pred HhcCCcEEEEEccC
Q 042817 256 ILSNKKFVLLLDDM 269 (922)
Q Consensus 256 ~l~~kr~LlVlDdv 269 (922)
.+ .+.=++|+|-.
T Consensus 179 ~~-~~~dlvIiDT~ 191 (296)
T 2px0_A 179 LF-SEYDHVFVDTA 191 (296)
T ss_dssp HG-GGSSEEEEECC
T ss_pred Hh-cCCCEEEEeCC
Confidence 33 34457888843
No 274
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.88 E-value=0.057 Score=57.79 Aligned_cols=94 Identities=16% Similarity=0.229 Sum_probs=53.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhc--cCCC-ceEEEEEeCCCCCHHHHHHHHHhhccCCccc-------ccCC--
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQE--RHDF-DIVIWVVVSKDLNLEKVQEDIGKKIDMFSES-------WKNK-- 244 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~-- 244 (922)
.-.++.|+|++|+|||||++.++...... .+.. ..++|++....+....+ ..+++..+..... ....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 44799999999999999999998875100 1111 24589987665544433 3344443322110 0011
Q ss_pred -ChhhhHHHHHHHhc------CCcEEEEEccCCC
Q 042817 245 -SPVEKSCAIFKILS------NKKFVLLLDDMWE 271 (922)
Q Consensus 245 -~~~~~~~~l~~~l~------~kr~LlVlDdv~~ 271 (922)
...+....+...+. .+.-+||+|.+-.
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 12233344444454 4677999998854
No 275
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.86 E-value=0.044 Score=53.61 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+|.|.|++|+||||.|+.++..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999887
No 276
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.76 E-value=0.018 Score=56.30 Aligned_cols=26 Identities=46% Similarity=0.396 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...+|.|+|++|+||||+|+.++...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999999886
No 277
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.69 E-value=0.017 Score=54.98 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+|+|.|++|+||||+|+.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47999999999999999999 443
No 278
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.67 E-value=0.1 Score=54.91 Aligned_cols=51 Identities=10% Similarity=0.145 Sum_probs=37.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKK 233 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 233 (922)
-.++.|.|.+|+||||+|..++.... ..+ ..++|++.. .+..++...+...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a-~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMS-DND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHH-TTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHH-HcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 36899999999999999999987762 222 577887765 4666776666554
No 279
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.64 E-value=0.093 Score=54.62 Aligned_cols=89 Identities=19% Similarity=0.092 Sum_probs=49.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCC-HHHHHHHHHhhccCCccc-ccCCChhhhHHHHHH
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLN-LEKVQEDIGKKIDMFSES-WKNKSPVEKSCAIFK 255 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~~ 255 (922)
..+++++|.+|+||||++..++.... .. -..+.+++...... ....++...+..+.+--. ....+..+......+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~-~~--g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK-KK--GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH-HT--TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-HC--CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 56999999999999999999988872 22 22455665443222 222333444444432110 012344444444444
Q ss_pred HhcCCcE-EEEEccC
Q 042817 256 ILSNKKF-VLLLDDM 269 (922)
Q Consensus 256 ~l~~kr~-LlVlDdv 269 (922)
.++.+.| ++++|-.
T Consensus 175 ~~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 4542333 7888865
No 280
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.62 E-value=0.059 Score=59.13 Aligned_cols=91 Identities=20% Similarity=0.387 Sum_probs=51.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCC-CHHHHHHHHHhhccCCcc----cccCCChhhh----
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDL-NLEKVQEDIGKKIDMFSE----SWKNKSPVEK---- 249 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~~~---- 249 (922)
..++|+|.+|+|||||++.+..... ...-+.++++-+.+.. ...++.+++...-.+... ......+...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~--~~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~ 229 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIA--QEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVA 229 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHH--HHTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhh--hccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHH
Confidence 3689999999999999999988762 1222445666666554 344555555432100000 0011111111
Q ss_pred --HHHHHHHh---cCCcEEEEEccCCC
Q 042817 250 --SCAIFKIL---SNKKFVLLLDDMWE 271 (922)
Q Consensus 250 --~~~l~~~l---~~kr~LlVlDdv~~ 271 (922)
.-.+.+++ +++++|+++||+..
T Consensus 230 ~~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 230 LTGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 11334443 57899999999943
No 281
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.54 E-value=0.02 Score=64.14 Aligned_cols=44 Identities=11% Similarity=0.184 Sum_probs=37.6
Q ss_pred CcccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 157 PRIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+.++|++..++.+...+..+ .-|.|+|++|+|||+||+++++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHH
Confidence 36799999999888877654 367899999999999999999876
No 282
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.52 E-value=0.031 Score=60.53 Aligned_cols=45 Identities=31% Similarity=0.246 Sum_probs=36.5
Q ss_pred cccchhhHHHHHHHHhc-------------c--CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 158 RIIGQESIFDDAWRCMI-------------E--EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~-------------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.++|.+..++.+...+. . .....+.++|++|+|||++|+++++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 46899998888887772 1 123568899999999999999999886
No 283
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.51 E-value=0.041 Score=49.39 Aligned_cols=53 Identities=19% Similarity=0.358 Sum_probs=30.0
Q ss_pred eeeeccCCcc--ccchhhccCCCCCEEeCCCCccccccChhhhCCCCCCCEEEeecCC
Q 042817 590 YLNLSSTGIR--VLPEELKALKDLSYLNMERTSFVRRIPRQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 590 ~L~L~~~~i~--~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 645 (922)
.++.+++.++ .+|..+. .+|++|+|++|. +..+|.+.+..+++|++|++.+|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 4555555555 5554432 346666666665 455665555666666666666654
No 284
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.50 E-value=0.021 Score=54.96 Aligned_cols=25 Identities=36% Similarity=0.333 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+.|.|+|++|+||||+|+.++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999876
No 285
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.47 E-value=0.021 Score=55.38 Aligned_cols=25 Identities=36% Similarity=0.413 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
-.+++|+|++|+|||||++.+....
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcc
Confidence 3689999999999999999997653
No 286
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.46 E-value=0.038 Score=55.12 Aligned_cols=40 Identities=28% Similarity=0.398 Sum_probs=30.9
Q ss_pred hhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 163 ESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 163 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
++..+.+...+.......|+|+|.+|+|||||+..+....
T Consensus 23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3344555555555667899999999999999999998875
No 287
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.46 E-value=0.022 Score=54.66 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
++++|+|+.|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998875
No 288
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.45 E-value=0.022 Score=54.44 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNN 200 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~ 200 (922)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 289
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.45 E-value=0.18 Score=53.13 Aligned_cols=26 Identities=38% Similarity=0.461 Sum_probs=23.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...+++|+|+.|+||||+++.++...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999877
No 290
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.43 E-value=0.019 Score=54.65 Aligned_cols=24 Identities=42% Similarity=0.494 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+|+|+|++|+||||+++.++...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999876
No 291
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.42 E-value=0.023 Score=53.67 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=22.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...+|+|.|+.|+||||+|+.+....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999886
No 292
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.40 E-value=0.0061 Score=73.19 Aligned_cols=46 Identities=26% Similarity=0.279 Sum_probs=36.5
Q ss_pred CcccchhhHHHHHHHHhcc-------------CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 157 PRIIGQESIFDDAWRCMIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..++|.+..++++.+.+.- .....+.++|++|+||||||+++++..
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 3568888888888776642 123468899999999999999999987
No 293
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.39 E-value=0.025 Score=54.76 Aligned_cols=24 Identities=38% Similarity=0.475 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+|.|.|++|+||||+|+.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999987
No 294
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.35 E-value=0.029 Score=54.89 Aligned_cols=27 Identities=37% Similarity=0.458 Sum_probs=24.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 176 EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 176 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
....+|+|+|++|.||||+|+.+....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 455799999999999999999999887
No 295
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.30 E-value=0.099 Score=57.19 Aligned_cols=102 Identities=18% Similarity=0.324 Sum_probs=61.4
Q ss_pred HHHHHhcc-CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCC-CHHHHHHHHHhhccCC------cc
Q 042817 168 DAWRCMIE-EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDL-NLEKVQEDIGKKIDMF------SE 239 (922)
Q Consensus 168 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~------~~ 239 (922)
++++.|.. .+-..++|+|..|+|||+|++.+.+... +.+-+.++++-+.+.. .+.++.+++.+.=... ..
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rt 219 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKV 219 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTT--TTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCE
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhH--hhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceE
Confidence 34555543 2346889999999999999999998852 3445667777777654 3556777775542211 00
Q ss_pred c--cc--CCChh------hhHHHHHHHh---cCCcEEEEEccCCC
Q 042817 240 S--WK--NKSPV------EKSCAIFKIL---SNKKFVLLLDDMWE 271 (922)
Q Consensus 240 ~--~~--~~~~~------~~~~~l~~~l---~~kr~LlVlDdv~~ 271 (922)
. .. +.... ...-.+.+++ +++.+||++||+-.
T Consensus 220 vvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 220 ALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 0 01 11111 1122344444 46899999999843
No 296
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.27 E-value=0.039 Score=60.00 Aligned_cols=46 Identities=28% Similarity=0.266 Sum_probs=35.5
Q ss_pred CcccchhhHHHHHHHHhcc------------------------------CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 157 PRIIGQESIFDDAWRCMIE------------------------------EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~------------------------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..++|.+..++.+...+.. .....+.++|++|+|||++|+++++..
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 3578888888877766520 123468899999999999999999876
No 297
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.26 E-value=0.045 Score=56.79 Aligned_cols=27 Identities=30% Similarity=0.250 Sum_probs=24.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 176 EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 176 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
....+|+|+|..|+||||||+.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345799999999999999999998877
No 298
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.26 E-value=0.22 Score=54.35 Aligned_cols=26 Identities=31% Similarity=0.258 Sum_probs=23.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...++.|+|.+|+||||++..++...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999887
No 299
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.22 E-value=0.12 Score=53.93 Aligned_cols=89 Identities=19% Similarity=0.211 Sum_probs=48.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHH--HHHHHHHhhccCCccc-ccCCChhhh-HHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLE--KVQEDIGKKIDMFSES-WKNKSPVEK-SCA 252 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~--~~~~~i~~~l~~~~~~-~~~~~~~~~-~~~ 252 (922)
...+|.|+|.+|+||||++..++.... .. -..+.++... .+... +-+...++..+.+.-. ....+.... ...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~-~~--g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFV-DE--GKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH-HT--TCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHH-hc--CCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 447999999999999999999998872 22 1234555543 22222 1223344444332110 011222222 223
Q ss_pred HHHHhcCCcEEEEEccC
Q 042817 253 IFKILSNKKFVLLLDDM 269 (922)
Q Consensus 253 l~~~l~~kr~LlVlDdv 269 (922)
+...+..+.-++|+|-.
T Consensus 179 l~~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 179 VAHALARNKDVVIIDTA 195 (306)
T ss_dssp HHHHHHTTCSEEEEEEC
T ss_pred HHHHHhcCCCEEEEECC
Confidence 44445555558888865
No 300
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.21 E-value=0.11 Score=52.41 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=32.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHH
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDI 230 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 230 (922)
.++.|.|.+|+||||+|.+++..... .-..++|++... ...++.+.+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~--~~~~~~~~~ 70 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEE--HPVQVRQNM 70 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSS--CHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccC--CHHHHHHHH
Confidence 58999999999999999888766521 123577777544 344444433
No 301
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.16 E-value=0.037 Score=54.94 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=32.8
Q ss_pred chhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 161 GQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 161 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+.++..+++.+.+.....++|+|+|.+|+|||||+..+....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 13 ENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 344455566665555677899999999999999999998875
No 302
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.15 E-value=0.022 Score=55.74 Aligned_cols=25 Identities=24% Similarity=0.411 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..+|+|.|++|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999886
No 303
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.14 E-value=0.033 Score=53.70 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=23.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...+|.|.|++|+||||+|+.++...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44689999999999999999999887
No 304
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.12 E-value=0.029 Score=54.86 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=23.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...+|+|+|+.|.||||+|+.+....
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 44699999999999999999998875
No 305
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.12 E-value=0.029 Score=54.21 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+|.|.|++|+||||+|+.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999876
No 306
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.11 E-value=0.02 Score=54.90 Aligned_cols=24 Identities=42% Similarity=0.559 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
|.|.|+|++|+|||||++++....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 468899999999999999998875
No 307
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.09 E-value=0.039 Score=59.03 Aligned_cols=114 Identities=15% Similarity=0.181 Sum_probs=63.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHH
Q 042817 176 EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFK 255 (922)
Q Consensus 176 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 255 (922)
....+++|+|+.|.||||+.+.+........ -..++.+. +..... .. .....................+..
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~--~~~i~t~e--d~~e~~--~~---~~~~~v~q~~~~~~~~~~~~~La~ 191 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTK--YHHILTIE--DPIEFV--HE---SKKCLVNQREVHRDTLGFSEALRS 191 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHC--CCEEEEEE--SSCCSC--CC---CSSSEEEEEEBTTTBSCHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCC--CcEEEEcc--CcHHhh--hh---ccccceeeeeeccccCCHHHHHHH
Confidence 3445999999999999999999988762110 11222222 211100 00 000000000011122334557888
Q ss_pred HhcCCcEEEEEccCCCccccccccccCCCCCCCcEEEEEcCChhhh
Q 042817 256 ILSNKKFVLLLDDMWEPVDLTKVGVPIPNSTNASKVVFTTRYKEVC 301 (922)
Q Consensus 256 ~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTtR~~~v~ 301 (922)
.|...+=+|++|++-+.+.++.+.... ..|.-||+||...+.+
T Consensus 192 aL~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 192 ALREDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp HTTSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred HhhhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 999999999999998765544432221 2355688888876654
No 308
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.06 E-value=0.032 Score=53.15 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..+|+|+|++|.||||+|+.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 309
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.03 E-value=0.027 Score=53.96 Aligned_cols=25 Identities=52% Similarity=0.530 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.++|.|+|++|+||||+|+.+....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999999876
No 310
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.00 E-value=0.033 Score=53.95 Aligned_cols=25 Identities=36% Similarity=0.410 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 3689999999999999999999876
No 311
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.98 E-value=0.033 Score=56.71 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+|.|.|++|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 578999999999999999999876
No 312
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.97 E-value=0.027 Score=53.65 Aligned_cols=24 Identities=38% Similarity=0.454 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..|.|.|++|+||||+|+.++...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999886
No 313
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.95 E-value=0.17 Score=55.61 Aligned_cols=101 Identities=16% Similarity=0.277 Sum_probs=63.0
Q ss_pred HHHHhcc-CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCC-CHHHHHHHHHhhccCC-------c-
Q 042817 169 AWRCMIE-EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDL-NLEKVQEDIGKKIDMF-------S- 238 (922)
Q Consensus 169 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~- 238 (922)
+++.|.. .+-..++|+|..|+|||+|+..+.+... +.+-+.++++-+.... ...++.+++...=... .
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rt 232 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKV 232 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTT--TTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHH--hhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccce
Confidence 3454443 2345789999999999999999998852 3455778888877665 4667777776532111 0
Q ss_pred ----ccccC-----CChhhhHHHHHHHhc---CCcEEEEEccCCC
Q 042817 239 ----ESWKN-----KSPVEKSCAIFKILS---NKKFVLLLDDMWE 271 (922)
Q Consensus 239 ----~~~~~-----~~~~~~~~~l~~~l~---~kr~LlVlDdv~~ 271 (922)
...+. .......-.+.++++ ++.+||++||+-.
T Consensus 233 vvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 233 ALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp EEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 00000 111122334556664 4899999999843
No 314
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.95 E-value=0.022 Score=61.34 Aligned_cols=45 Identities=27% Similarity=0.436 Sum_probs=33.8
Q ss_pred cccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 158 RIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.++|.+..++.+...+......-+.|+|++|+|||++|+++++..
T Consensus 25 ~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 25 AIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 589998866655444432222348899999999999999999976
No 315
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.92 E-value=0.033 Score=53.85 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNK 201 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~ 201 (922)
.+++|+|+.|.||||+++.+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 57899999999999999999763
No 316
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.88 E-value=0.032 Score=54.73 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+++|+|+.|+|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999998865
No 317
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.83 E-value=0.035 Score=54.30 Aligned_cols=23 Identities=35% Similarity=0.702 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.|+|.|+.|+||||+|+.++...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999987
No 318
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.80 E-value=0.038 Score=52.76 Aligned_cols=23 Identities=48% Similarity=0.678 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.++|+|+.|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999886
No 319
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.79 E-value=0.027 Score=54.29 Aligned_cols=24 Identities=42% Similarity=0.559 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999999876
No 320
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.78 E-value=0.035 Score=53.39 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHH
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNK 201 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~ 201 (922)
...|+|+|+.|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999987
No 321
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.77 E-value=0.037 Score=53.71 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...+|+|.|++|+||||+|+.++...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999876
No 322
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.76 E-value=0.085 Score=51.84 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+|.|.|++|+||||+|+.+....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999987
No 323
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.76 E-value=0.034 Score=54.75 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...+|+|+|+.|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34689999999999999999999876
No 324
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.74 E-value=0.38 Score=52.86 Aligned_cols=40 Identities=30% Similarity=0.405 Sum_probs=29.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeC
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVS 218 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s 218 (922)
..++|.++|.+|+||||+|..++.... .... ..+..|++.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~-~~~G-~kVllvd~D 138 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLR-EKHK-KKVLVVSAD 138 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHH-HTSC-CCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HhcC-CeEEEEecC
Confidence 457999999999999999999998873 2212 245555544
No 325
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.72 E-value=0.032 Score=54.71 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..+|+|+|++|+||||+++.+....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999998876
No 326
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.72 E-value=0.029 Score=53.93 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+|.|+|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999876
No 327
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.71 E-value=0.041 Score=53.33 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+|+|.|++|+||||+|+.+....
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998876
No 328
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.67 E-value=0.039 Score=55.13 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+|+|+|+.|.||||+|+.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998876
No 329
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.64 E-value=0.044 Score=52.73 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..|+|.|++|+||||+|+.+.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999876
No 330
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.63 E-value=0.053 Score=52.20 Aligned_cols=37 Identities=8% Similarity=0.084 Sum_probs=27.9
Q ss_pred HHHHHHHhcc-CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 166 FDDAWRCMIE-EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 166 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+..+..++.+ +..+.+.|+|++|+||||+|.++++..
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4445555543 233479999999999999999999886
No 331
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.62 E-value=0.037 Score=54.21 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNN 200 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~ 200 (922)
.+|+|+|+.|+||||+|+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 332
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.62 E-value=0.048 Score=59.76 Aligned_cols=46 Identities=26% Similarity=0.281 Sum_probs=36.2
Q ss_pred CcccchhhHHHHHHHHhcc--------------CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 157 PRIIGQESIFDDAWRCMIE--------------EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..++|.+..++.+...+.. ...+-|.++|++|+||||+|++++...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4679998888887665522 123468899999999999999999987
No 333
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.61 E-value=0.045 Score=53.53 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=23.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...+|+|.|++|+||||+|+.+++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999999875
No 334
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.60 E-value=0.061 Score=55.82 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=23.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998875
No 335
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.60 E-value=0.047 Score=53.80 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=24.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..++|.|.|++|+||||.|+.++..+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999887
No 336
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.59 E-value=0.041 Score=53.60 Aligned_cols=24 Identities=38% Similarity=0.440 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+|+|.|++|+||||+|+.+....
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999886
No 337
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.57 E-value=0.032 Score=52.91 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHH
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLN 199 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~ 199 (922)
-.+++|+|+.|.|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 3689999999999999999643
No 338
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.55 E-value=0.036 Score=52.61 Aligned_cols=24 Identities=38% Similarity=0.436 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 339
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.55 E-value=0.19 Score=49.71 Aligned_cols=24 Identities=33% Similarity=0.374 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
-.++|.|++|+||||+|+.+....
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999887
No 340
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.51 E-value=0.04 Score=57.88 Aligned_cols=41 Identities=22% Similarity=0.391 Sum_probs=31.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCC
Q 042817 176 EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSK 219 (922)
Q Consensus 176 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 219 (922)
++.+||+|+|-|||||||.|..++..... .+ ..+.-|++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~-~G--kkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI-LG--KRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH-TT--CCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHH-CC--CeEEEEecCC
Confidence 46799999999999999999988887732 22 2467777664
No 341
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.47 E-value=0.04 Score=54.08 Aligned_cols=24 Identities=38% Similarity=0.457 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+|+|+|+.|+||||+++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998765
No 342
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.47 E-value=0.048 Score=53.25 Aligned_cols=26 Identities=35% Similarity=0.426 Sum_probs=22.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHH
Q 042817 176 EQVGIIGLYGAGGVGKTTLLKQLNNK 201 (922)
Q Consensus 176 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 201 (922)
.+..+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999999864
No 343
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.47 E-value=0.045 Score=53.93 Aligned_cols=26 Identities=38% Similarity=0.530 Sum_probs=23.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...+|+|+|+.|.|||||++.+....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999876
No 344
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.44 E-value=0.047 Score=51.45 Aligned_cols=23 Identities=35% Similarity=0.258 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.|+|.|++|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 345
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.42 E-value=0.046 Score=52.83 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 44689999999999999999999875
No 346
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.41 E-value=0.048 Score=52.71 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..+|+|.|++|+||||+|+.+....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 347
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.37 E-value=0.048 Score=53.30 Aligned_cols=24 Identities=38% Similarity=0.401 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+|.|.|++|+||||+|+.+....
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999999876
No 348
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.36 E-value=0.049 Score=55.42 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...+|+|.|+.|+||||+|+.+....
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998875
No 349
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.35 E-value=0.09 Score=53.07 Aligned_cols=26 Identities=31% Similarity=0.268 Sum_probs=23.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...+|+|.|++|+||||+|+.+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999876
No 350
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.33 E-value=0.051 Score=55.60 Aligned_cols=25 Identities=44% Similarity=0.558 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..+|.|.|++|+||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999875
No 351
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.33 E-value=0.037 Score=53.96 Aligned_cols=24 Identities=42% Similarity=0.552 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
++++|+|+.|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998875
No 352
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.27 E-value=0.058 Score=52.15 Aligned_cols=26 Identities=38% Similarity=0.549 Sum_probs=23.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...+|+|+|+.|.||||+|+.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999998874
No 353
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.27 E-value=0.26 Score=54.45 Aligned_cols=26 Identities=35% Similarity=0.494 Sum_probs=23.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...+++|+|.+|+|||||++.++...
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 34699999999999999999999876
No 354
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.26 E-value=0.05 Score=52.67 Aligned_cols=23 Identities=43% Similarity=0.583 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 355
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.25 E-value=0.049 Score=55.19 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..+|+|+|++|+||||+++.++...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999776
No 356
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.22 E-value=0.056 Score=50.75 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..++++|+|..|+|||||+..+....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 35789999999999999999999886
No 357
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.22 E-value=0.25 Score=51.98 Aligned_cols=26 Identities=38% Similarity=0.562 Sum_probs=23.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...+|+|+|.+|+||||++..++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998887
No 358
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.22 E-value=0.043 Score=58.12 Aligned_cols=53 Identities=17% Similarity=0.158 Sum_probs=35.2
Q ss_pred HHHHHHhcc-CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCC
Q 042817 167 DDAWRCMIE-EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKD 220 (922)
Q Consensus 167 ~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~ 220 (922)
-++++.+.. ..-..++|+|.+|+|||+|++.+.+........+.+ +++-+.+.
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDER 216 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCC
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccC
Confidence 456666654 334578999999999999999999876221223333 45555543
No 359
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.20 E-value=0.052 Score=53.28 Aligned_cols=26 Identities=46% Similarity=0.621 Sum_probs=22.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...+|+|+|++|.||||+|+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999987653
No 360
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.17 E-value=0.26 Score=51.98 Aligned_cols=51 Identities=14% Similarity=0.131 Sum_probs=37.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhc
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKI 234 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 234 (922)
.++.|.|.+|+||||+|..++..... .=..++|++. ..+..++...++...
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 58999999999999999999888722 2235667654 456677776665543
No 361
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.16 E-value=0.049 Score=53.45 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNN 200 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~ 200 (922)
.+|+|+|+.|.||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 362
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.05 E-value=0.083 Score=55.39 Aligned_cols=43 Identities=26% Similarity=0.306 Sum_probs=30.1
Q ss_pred cchhhHHHHHHHHhcc----CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 160 IGQESIFDDAWRCMIE----EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 160 vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+|-...+..+...+.. ....+|+|.|+.|+||||+|+.+....
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4444444444443332 234599999999999999999998876
No 363
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.03 E-value=0.07 Score=54.29 Aligned_cols=26 Identities=35% Similarity=0.358 Sum_probs=23.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...+|.|+|++|.||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999999876
No 364
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.02 E-value=0.039 Score=52.93 Aligned_cols=24 Identities=42% Similarity=0.534 Sum_probs=18.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+|.|.|++|+||||+|+.+....
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999998876
No 365
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.01 E-value=0.15 Score=65.72 Aligned_cols=86 Identities=15% Similarity=0.137 Sum_probs=56.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccc---cCCChhhhHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESW---KNKSPVEKSCAI 253 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 253 (922)
.-+.+-|+|++|+|||+||.++..... ..=..++|+++...++... ++.++..-+.. .....++....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~---~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 457999999999999999999988762 2223678888888777666 33444221111 122334445555
Q ss_pred HHHhc-CCcEEEEEccCC
Q 042817 254 FKILS-NKKFVLLLDDMW 270 (922)
Q Consensus 254 ~~~l~-~kr~LlVlDdv~ 270 (922)
++..+ .+.-+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 55543 567799999985
No 366
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.00 E-value=0.057 Score=53.42 Aligned_cols=23 Identities=39% Similarity=0.416 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 367
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.97 E-value=0.062 Score=50.05 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=23.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 176 EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 176 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..-.+++|+|+.|.|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344699999999999999999999875
No 368
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.97 E-value=0.053 Score=53.28 Aligned_cols=25 Identities=28% Similarity=0.538 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
-.+++|+|+.|+|||||++.+..-.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3699999999999999999998876
No 369
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.95 E-value=0.44 Score=53.23 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=22.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..++|.|+|.+|+||||++..++...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35699999999999999999998877
No 370
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.94 E-value=0.057 Score=53.16 Aligned_cols=24 Identities=33% Similarity=0.275 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+|+|.|+.|+||||+|+.+....
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999886
No 371
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.86 E-value=0.062 Score=52.15 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999886
No 372
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.84 E-value=0.25 Score=51.31 Aligned_cols=89 Identities=17% Similarity=0.118 Sum_probs=47.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHH--HHHHHHhhccCCccc-ccCCChhhhHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEK--VQEDIGKKIDMFSES-WKNKSPVEKSCAI 253 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~--~~~~i~~~l~~~~~~-~~~~~~~~~~~~l 253 (922)
...+++|+|.+|+||||++..++.... .. -..+.++..... .... .+..+.+..+.+.-. ....++.++....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~-~~--~~~v~l~~~d~~-~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~ 172 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK-GK--GRRPLLVAADTQ-RPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRV 172 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH-HT--TCCEEEEECCSS-CHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-Hc--CCeEEEecCCcc-cHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHH
Confidence 346899999999999999999998872 22 123455554322 2211 122334433332110 0123444443333
Q ss_pred HHHh-cCCcEEEEEccC
Q 042817 254 FKIL-SNKKFVLLLDDM 269 (922)
Q Consensus 254 ~~~l-~~kr~LlVlDdv 269 (922)
...+ ....=++|+|-.
T Consensus 173 l~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 173 EEKARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHHHTCCEEEEECC
T ss_pred HHHHHhCCCCEEEEeCC
Confidence 3333 244457888975
No 373
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.84 E-value=0.13 Score=46.14 Aligned_cols=52 Identities=17% Similarity=0.278 Sum_probs=29.4
Q ss_pred EEeeeccccc--ccccccCCCCceEEEeccCcccccchhhhccCCCceEEEccCC
Q 042817 520 RMSLMNNKIR--NLSEPATCPHLLTLFLQNNRLSNITANFFQFMPSLKVLNLSNN 572 (922)
Q Consensus 520 ~l~l~~~~~~--~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~ 572 (922)
.++-+++.++ .+|.. -.++|+.|+|++|.++.++.+.|..+++|++|+|++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 3444445544 44321 1234666666666666666666666666666666665
No 374
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.83 E-value=0.06 Score=54.76 Aligned_cols=26 Identities=38% Similarity=0.526 Sum_probs=23.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...+|+|+|+.|.||||+++.++...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34699999999999999999999876
No 375
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.78 E-value=0.067 Score=54.15 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...+|+|.|+.|.|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44699999999999999999998864
No 376
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.77 E-value=0.068 Score=56.11 Aligned_cols=27 Identities=37% Similarity=0.400 Sum_probs=24.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 176 EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 176 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
....+|+|+|+.|.|||||++.+..-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 345799999999999999999999876
No 377
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.73 E-value=0.061 Score=53.21 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998775
No 378
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.72 E-value=0.065 Score=52.88 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..+|+|.|+.|+||||+|+.+....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999887
No 379
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.69 E-value=0.067 Score=53.08 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..|.|.|++|+||||+|+.++...
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 578999999999999999999876
No 380
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.65 E-value=0.066 Score=53.47 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..|.|.|++|+||||+|+.++...
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 579999999999999999999875
No 381
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.63 E-value=0.052 Score=53.81 Aligned_cols=25 Identities=40% Similarity=0.618 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
-.+++|+|+.|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998865
No 382
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.50 E-value=0.041 Score=54.29 Aligned_cols=23 Identities=35% Similarity=0.702 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 78999999999999999999887
No 383
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.50 E-value=0.068 Score=52.87 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.-.+++|+|+.|+|||||++.+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34699999999999999999999876
No 384
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.50 E-value=0.14 Score=49.18 Aligned_cols=115 Identities=15% Similarity=0.084 Sum_probs=57.2
Q ss_pred ccCCCceEEEccCCCCCc-----ccCccccCcccCCeeeeccCCcc-----ccchhhccCCCCCEEeCCCCccccc----
Q 042817 559 QFMPSLKVLNLSNNFSLR-----EFPPGISKLISLQYLNLSSTGIR-----VLPEELKALKDLSYLNMERTSFVRR---- 624 (922)
Q Consensus 559 ~~l~~L~~L~L~~~~~l~-----~lp~~i~~L~~L~~L~L~~~~i~-----~lp~~l~~l~~L~~L~l~~~~~l~~---- 624 (922)
.+-+.|+.|+|+++..+. .+-+.+..-..|+.|+|++|.|. .+-+.+..-+.|++|+|++|..-..
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 334455666665532222 12333444456666666666654 3444455556677777777653111
Q ss_pred cChhhhCCCCCCCEEEeecCCc--ccccccCcccccCccchHHHhhcCCCCceEEEEEec
Q 042817 625 IPRQLISNFPLLRVLRMLDCGA--LERAEHGSVLFNGGEILIEELLCLNHLSVLSVCLES 682 (922)
Q Consensus 625 lp~~~i~~l~~L~~L~l~~~~~--~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~ 682 (922)
+-. .+..-+.|++|++.++.. +. ........+.|..-+.|..|+++.+.
T Consensus 118 la~-aL~~N~tL~~L~L~n~~~~~ig--------~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 118 LLR-STLVTQSIVEFKADNQRQSVLG--------NQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHH-HTTTTCCCSEEECCCCSSCCCC--------HHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHH-HHhhCCceeEEECCCCcCcCcC--------HHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 111 134445577777765431 10 00111244556666777777765443
No 385
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.44 E-value=0.066 Score=53.21 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..|.|.|++|+||||+|+.++...
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999887
No 386
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.43 E-value=0.078 Score=50.61 Aligned_cols=25 Identities=36% Similarity=0.380 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
-.+|+|+|+.|.||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3588999999999999999999876
No 387
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.37 E-value=0.068 Score=52.21 Aligned_cols=24 Identities=25% Similarity=0.309 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+|+|.|+.|+||||+|+.+.+..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998864
No 388
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.35 E-value=0.084 Score=51.99 Aligned_cols=27 Identities=33% Similarity=0.378 Sum_probs=23.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 176 EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 176 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
....+|.|.|+.|.||||+|+.+....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 344689999999999999999999876
No 389
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.24 E-value=0.074 Score=51.24 Aligned_cols=23 Identities=43% Similarity=0.576 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+++|+|+.|+|||||++.++...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999999887
No 390
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.22 E-value=0.075 Score=50.19 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..+++|+|..|.|||||++.+....
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998887
No 391
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.20 E-value=0.087 Score=52.42 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+|+|.|++|.||||+|+.+....
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999876
No 392
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.18 E-value=0.13 Score=53.93 Aligned_cols=43 Identities=21% Similarity=0.362 Sum_probs=31.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCC
Q 042817 176 EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDL 221 (922)
Q Consensus 176 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~ 221 (922)
...++|+|+|-||+||||+|..++....+ .+ ..++-|+.....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~-~G--~~VlliD~D~~~ 81 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI-LG--KRVLQIGCDPKH 81 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH-TT--CCEEEEEESSSC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHH-CC--CeEEEEeCCCCC
Confidence 46789999999999999999999888732 22 256777765443
No 393
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.18 E-value=0.11 Score=49.87 Aligned_cols=108 Identities=14% Similarity=0.070 Sum_probs=70.2
Q ss_pred CCCCceEEEeccC-ccccc----chhhhccCCCceEEEccCCCCCcc-----cCccccCcccCCeeeeccCCcc-----c
Q 042817 536 TCPHLLTLFLQNN-RLSNI----TANFFQFMPSLKVLNLSNNFSLRE-----FPPGISKLISLQYLNLSSTGIR-----V 600 (922)
Q Consensus 536 ~~~~L~~L~l~~~-~l~~~----~~~~~~~l~~L~~L~L~~~~~l~~-----lp~~i~~L~~L~~L~L~~~~i~-----~ 600 (922)
.-+.|+.|+|+++ .+... ....+..-+.|+.|+|++| .+.. +.+.+..-..|++|+|++|.|. .
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 4456788888774 55422 1233556678899999888 5542 3334445577999999999886 3
Q ss_pred cchhhccCCCCCEEeCCCCcc--ccc-----cChhhhCCCCCCCEEEeecCC
Q 042817 601 LPEELKALKDLSYLNMERTSF--VRR-----IPRQLISNFPLLRVLRMLDCG 645 (922)
Q Consensus 601 lp~~l~~l~~L~~L~l~~~~~--l~~-----lp~~~i~~l~~L~~L~l~~~~ 645 (922)
+-+.+..-+.|++|+|++|.. ++. +.. ++..-+.|+.|++..+.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCC
Confidence 455666667899999986531 221 222 24556789999987654
No 394
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.16 E-value=0.07 Score=53.92 Aligned_cols=24 Identities=38% Similarity=0.376 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+|+|+|+.|.||||+++.++...
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999999876
No 395
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.12 E-value=0.087 Score=51.60 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+|+|.|+.|+||||+|+.+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999999876
No 396
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.07 E-value=0.25 Score=52.98 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=29.0
Q ss_pred HHHHHHHhc--cCCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 166 FDDAWRCMI--EEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 166 ~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..++.+.+. ..+..+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 444555554 3467899999999999999999998776
No 397
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.06 E-value=0.1 Score=60.60 Aligned_cols=43 Identities=26% Similarity=0.336 Sum_probs=37.3
Q ss_pred cccchhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 158 RIIGQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.++|.+..++.+...+..+ ..+.|+|++|+||||||+.++...
T Consensus 42 ~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred eEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 5799998888887777655 588999999999999999999876
No 398
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.97 E-value=0.093 Score=51.92 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..|.|.|++|+||||+|+.++...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999886
No 399
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.92 E-value=0.094 Score=55.19 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+|+|.|+.|+||||||+.++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999999886
No 400
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.92 E-value=0.096 Score=52.08 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999876
No 401
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.92 E-value=0.093 Score=54.26 Aligned_cols=24 Identities=33% Similarity=0.670 Sum_probs=21.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNN 200 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~ 200 (922)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999983
No 402
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.89 E-value=0.089 Score=52.07 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNN 200 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~ 200 (922)
.+|+|.|+.|.||||+|+.+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999976
No 403
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.89 E-value=0.095 Score=51.71 Aligned_cols=23 Identities=35% Similarity=0.252 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 404
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.86 E-value=0.1 Score=49.43 Aligned_cols=26 Identities=38% Similarity=0.535 Sum_probs=23.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..++++|+|..|+|||||+..+....
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998876
No 405
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.83 E-value=0.09 Score=56.77 Aligned_cols=113 Identities=13% Similarity=0.121 Sum_probs=60.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHH
Q 042817 176 EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFK 255 (922)
Q Consensus 176 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 255 (922)
..-.+++|+|+.|.||||+++.+..... ... -..++++.- .... ..-...+......-..+.......+..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~-~~~-~g~I~~~e~--~~e~-----~~~~~~~~v~Q~~~g~~~~~~~~~l~~ 204 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYIN-QTK-SYHIITIED--PIEY-----VFKHKKSIVNQREVGEDTKSFADALRA 204 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHH-HHS-CCEEEEEES--SCCS-----CCCCSSSEEEEEEBTTTBSCSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC-cCC-CcEEEEecc--cHhh-----hhccCceEEEeeecCCCHHHHHHHHHH
Confidence 3456899999999999999999988762 110 112333331 1110 000000000000000112233456777
Q ss_pred HhcCCcEEEEEccCCCccccccccccCCCCCCCcEEEEEcCChhh
Q 042817 256 ILSNKKFVLLLDDMWEPVDLTKVGVPIPNSTNASKVVFTTRYKEV 300 (922)
Q Consensus 256 ~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTtR~~~v 300 (922)
.+...+=+|++|.+.+.+......... ..|.-|+.|+-..++
T Consensus 205 ~L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~~ 246 (372)
T 2ewv_A 205 ALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 246 (372)
T ss_dssp HTTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCSH
T ss_pred HhhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcchH
Confidence 887788899999997654433322221 235567777776543
No 406
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=91.82 E-value=0.14 Score=55.68 Aligned_cols=99 Identities=13% Similarity=0.149 Sum_probs=56.7
Q ss_pred HHHHhcc-CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCc----eEEEEEeCCC-CCHHHHHHHHHhhccCCc----
Q 042817 169 AWRCMIE-EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFD----IVIWVVVSKD-LNLEKVQEDIGKKIDMFS---- 238 (922)
Q Consensus 169 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~----~~~wv~~s~~-~~~~~~~~~i~~~l~~~~---- 238 (922)
.++.|.. ..-..++|.|..|+|||+|+.++++.. ..+-+ .++++-+.+. ..+.++.+.+...=.+..
T Consensus 141 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~---~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV 217 (465)
T 3vr4_D 141 AIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQA---TVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMF 217 (465)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHC---BCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEE
T ss_pred EEecccccccCCEEEEeCCCCcChHHHHHHHHHHH---HhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEE
Confidence 3444432 223457899999999999999999886 22223 5666666654 345566666544210100
Q ss_pred -ccccCCChhh------hHHHHHHHhc---CCcEEEEEccCCC
Q 042817 239 -ESWKNKSPVE------KSCAIFKILS---NKKFVLLLDDMWE 271 (922)
Q Consensus 239 -~~~~~~~~~~------~~~~l~~~l~---~kr~LlVlDdv~~ 271 (922)
.. .+..... ..-.+.++++ ++.+|+++||+-.
T Consensus 218 ~at-sd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 218 MNL-ANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp EEE-TTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred EEC-CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 00 1111111 1223555654 6899999999853
No 407
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.79 E-value=0.18 Score=50.22 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=23.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.-.+|+|.|++|+||||+++.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999988
No 408
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.77 E-value=0.093 Score=52.74 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=23.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 176 EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 176 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.. .+++|+|+.|.|||||++.++.-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 46 899999999999999999988654
No 409
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.69 E-value=0.089 Score=53.27 Aligned_cols=24 Identities=38% Similarity=0.380 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHH
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNK 201 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~ 201 (922)
-.+++|+|++|+|||||++.++..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 369999999999999999998843
No 410
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.63 E-value=0.061 Score=53.88 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=16.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHH-HHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLN-NKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~-~~~ 202 (922)
-.+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3689999999999999999998 654
No 411
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=91.61 E-value=0.27 Score=47.82 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+|+|.|+.|.||||+|+.++...
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999987
No 412
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.58 E-value=0.099 Score=54.56 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...+++|+|++|+||||+++.++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34699999999999999999999887
No 413
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.56 E-value=0.18 Score=52.88 Aligned_cols=26 Identities=35% Similarity=0.365 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...+|+|+|+.|.|||||++.+....
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 44799999999999999999999875
No 414
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.53 E-value=0.11 Score=52.02 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..|.|.|++|+||||+|+.++...
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999887
No 415
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.44 E-value=0.12 Score=54.09 Aligned_cols=24 Identities=38% Similarity=0.412 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+|.|+|+.|+||||||+.++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999876
No 416
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.43 E-value=0.23 Score=51.71 Aligned_cols=51 Identities=20% Similarity=0.218 Sum_probs=33.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIG 231 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 231 (922)
.-.+++|+|.+|+|||||++.++.... ... =..++|+.... +..++.+.+.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~-~~~-G~~v~~~~~e~--~~~~~~~r~~ 84 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWG-TAM-GKKVGLAMLEE--SVEETAEDLI 84 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHH-HTS-CCCEEEEESSS--CHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH-HHc-CCeEEEEeCcC--CHHHHHHHHH
Confidence 336999999999999999999988872 221 11466665432 3444444443
No 417
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.41 E-value=0.087 Score=52.36 Aligned_cols=25 Identities=36% Similarity=0.409 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
-.+++|+|+.|.|||||++.++.-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999988654
No 418
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.26 E-value=0.091 Score=52.67 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=22.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34689999999999999999988654
No 419
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.24 E-value=0.43 Score=53.94 Aligned_cols=51 Identities=16% Similarity=0.110 Sum_probs=36.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGK 232 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 232 (922)
-.++.|.|.+|+||||+|.+++.+.. . .+=..++|++... +..++...++.
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a-~-~~g~~vl~~s~E~--s~~~l~~r~~~ 292 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWG-T-AMGKKVGLAMLEE--SVEETAEDLIG 292 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHT-T-TSCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHH-H-hcCCcEEEEeccC--CHHHHHHHHHH
Confidence 36889999999999999999988872 1 1123577776544 46677666543
No 420
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.19 E-value=0.13 Score=53.64 Aligned_cols=26 Identities=38% Similarity=0.572 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...+++|+|+.|+||||+++.++...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999999887
No 421
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.06 E-value=0.086 Score=51.65 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNK 201 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~ 201 (922)
.+++|+|+.|.|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999876
No 422
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.06 E-value=0.12 Score=53.33 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+|.|.|+.|+||||||..++...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 589999999999999999998765
No 423
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.86 E-value=0.1 Score=53.47 Aligned_cols=25 Identities=36% Similarity=0.658 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
-.+++|+|+.|.|||||++.+..-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3589999999999999999987654
No 424
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=90.84 E-value=0.27 Score=52.33 Aligned_cols=51 Identities=24% Similarity=0.284 Sum_probs=35.4
Q ss_pred ccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHH
Q 042817 174 IEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEK 225 (922)
Q Consensus 174 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~ 225 (922)
.....+++.+.|.||+||||+|..++..... ...=..++-|+.....++..
T Consensus 14 ~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~-~~~g~~vllid~D~~~~l~~ 64 (348)
T 3io3_A 14 QHDSLKWIFVGGKGGVGKTTTSSSVAVQLAL-AQPNEQFLLISTDPAHNLSD 64 (348)
T ss_dssp TCTTCSEEEEECSTTSSHHHHHHHHHHHHHH-HCTTSCEEEEECCSSCHHHH
T ss_pred cCCCcEEEEEeCCCCCcHHHHHHHHHHHHHH-hcCCCeEEEEECCCCCChHH
Confidence 3456689999999999999999999888720 02233567777665544443
No 425
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.82 E-value=0.63 Score=51.58 Aligned_cols=51 Identities=8% Similarity=-0.046 Sum_probs=36.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGK 232 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 232 (922)
-.++.|.|.+|+||||+|..++.... .. .=..++|++.. .+..++...++.
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a-~~-~g~~vl~~slE--~~~~~l~~R~~~ 250 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAA-LK-EGVGVGIYSLE--MPAAQLTLRMMC 250 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHH-HT-TCCCEEEEESS--SCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHH-Hh-CCCeEEEEECC--CCHHHHHHHHHH
Confidence 35899999999999999999988762 21 12357777654 456677666654
No 426
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.80 E-value=0.47 Score=52.79 Aligned_cols=50 Identities=12% Similarity=0.140 Sum_probs=35.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHH
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIG 231 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 231 (922)
-.++.|.|.+|+||||+|..++..... . .-..++|++... +..++...+.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~-~-~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVAT-K-TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHH-H-SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH-h-CCCcEEEEECCC--CHHHHHHHHH
Confidence 358999999999999999999887622 1 112577776543 4556665554
No 427
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=90.77 E-value=0.3 Score=51.61 Aligned_cols=50 Identities=28% Similarity=0.270 Sum_probs=36.0
Q ss_pred hccCCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHH
Q 042817 173 MIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEK 225 (922)
Q Consensus 173 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~ 225 (922)
+.+...+++.+.|-||+||||+|..++.... ..-..++-|+.....++..
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la---~~g~~vllid~D~~~~l~~ 60 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQLA---KVRRSVLLLSTDPAHNLSD 60 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHHT---TSSSCEEEEECCSSCHHHH
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHHH---hCCCcEEEEECCCCCChhH
Confidence 3344567888999999999999999998872 2334577777765544443
No 428
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.76 E-value=0.11 Score=53.06 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=22.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999988654
No 429
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.73 E-value=0.11 Score=52.15 Aligned_cols=26 Identities=27% Similarity=0.528 Sum_probs=22.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34699999999999999999998765
No 430
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.73 E-value=0.13 Score=52.16 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHH
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNK 201 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~ 201 (922)
-.+++|+|+.|.|||||++.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 431
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.65 E-value=0.47 Score=61.38 Aligned_cols=87 Identities=16% Similarity=0.144 Sum_probs=57.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccc---cCCChhhhHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESW---KNKSPVEKSCAI 253 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 253 (922)
.-+++.|+|++|+||||||.+++.... . .-..++|++.....+... ++.++...+.. ...+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a-~--~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ-R--EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 453 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH-T--TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH-h--cCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHH
Confidence 346999999999999999999988872 2 223688888877766542 45555432211 233455555555
Q ss_pred HHHh-cCCcEEEEEccCCC
Q 042817 254 FKIL-SNKKFVLLLDDMWE 271 (922)
Q Consensus 254 ~~~l-~~kr~LlVlDdv~~ 271 (922)
.... +.+.-+||+|-+..
T Consensus 454 ~~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHHTCCSEEEESCGGG
T ss_pred HHHHHhcCCcEEEECCHHH
Confidence 5444 34566999999854
No 432
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.62 E-value=0.13 Score=52.56 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNK 201 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~ 201 (922)
.-.+++|+|+.|.|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999875
No 433
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.60 E-value=0.15 Score=49.26 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.-.|+|+|.+|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998764
No 434
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.59 E-value=0.11 Score=52.96 Aligned_cols=25 Identities=36% Similarity=0.638 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
-.+++|+|+.|.|||||++.+..-.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3689999999999999999988754
No 435
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.58 E-value=0.23 Score=51.28 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.++.|+|++|+||||||..++...
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 699999999999999999998765
No 436
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.55 E-value=0.12 Score=52.10 Aligned_cols=25 Identities=40% Similarity=0.549 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
-.+++|+|+.|.|||||.+.++.-.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999988654
No 437
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.54 E-value=0.12 Score=52.75 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=22.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 34689999999999999999988654
No 438
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.54 E-value=0.1 Score=51.38 Aligned_cols=24 Identities=42% Similarity=0.776 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+++|+|+.|.|||||++.++.-.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999987654
No 439
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.54 E-value=0.16 Score=52.35 Aligned_cols=25 Identities=36% Similarity=0.355 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.++|.|.|+.|+||||||..++...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4689999999999999999999875
No 440
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.47 E-value=0.079 Score=55.03 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=20.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+..+|+|.|..|+||||+|+.+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998865
No 441
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.46 E-value=0.12 Score=54.18 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..+|.|+|+.|+||||||..++...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 3689999999999999999998765
No 442
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.45 E-value=0.46 Score=52.48 Aligned_cols=50 Identities=10% Similarity=0.086 Sum_probs=34.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGK 232 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 232 (922)
-.++.|.|.+|+||||+|..++.+.. .. =..++|++... +..++...+..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a-~~--g~~vl~fSlEm--s~~ql~~R~~~ 246 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMS-DN--DDVVNLHSLEM--GKKENIKRLIV 246 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHH-HT--TCEEEEECSSS--CTTHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHH-Hc--CCEEEEEECCC--CHHHHHHHHHH
Confidence 35899999999999999999988873 22 23567765543 44455555443
No 443
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.44 E-value=0.12 Score=52.63 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
-.+++|+|+.|.|||||.+.++.-.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999988654
No 444
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=90.41 E-value=0.44 Score=46.78 Aligned_cols=108 Identities=12% Similarity=-0.001 Sum_probs=53.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCC-CCCHHHHHHHHHhhccCCcccccCCChhhhHHHHHHH
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSK-DLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIFKI 256 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 256 (922)
-.+..++|.-|.||||-|.....+. . .......++-..-. ... . .+...++.........+..+... .
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~-~-~~g~kvli~kp~~D~Ryg-~----~i~sr~G~~~~a~~i~~~~di~~----~ 87 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRF-Q-IAQYKCLVIKYAKDTRYS-S----SFCTHDRNTMEALPACLLRDVAQ----E 87 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH-H-TTTCCEEEEEETTCCCC----------------CEEEEESSGGGGHH----H
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHH-H-HCCCeEEEEeecCCccch-H----HHHhhcCCeeEEEecCCHHHHHH----H
Confidence 3688999999999998887776665 2 23344433333222 222 2 34444433322111122223222 2
Q ss_pred hcCCcEEEEEccCCCccccccccccCCCCCCCcEEEEEcCChh
Q 042817 257 LSNKKFVLLLDDMWEPVDLTKVGVPIPNSTNASKVVFTTRYKE 299 (922)
Q Consensus 257 l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTtR~~~ 299 (922)
. ++--+|++|.+.--.+..++...+.+ .|-.||+|.++.+
T Consensus 88 ~-~~~dvViIDEaQF~~~v~el~~~l~~--~gi~VI~~GL~~D 127 (234)
T 2orv_A 88 A-LGVAVIGIDEGQFFPDIVEFCEAMAN--AGKTVIVAALDGT 127 (234)
T ss_dssp H-TTCSEEEESSGGGCTTHHHHHHHHHH--TTCEEEEECCSBC
T ss_pred h-ccCCEEEEEchhhhhhHHHHHHHHHh--CCCEEEEEecccc
Confidence 2 22239999998543333333333322 5678999999844
No 445
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.40 E-value=0.15 Score=53.27 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNK 201 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~ 201 (922)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999875
No 446
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.38 E-value=0.24 Score=55.40 Aligned_cols=43 Identities=14% Similarity=-0.059 Sum_probs=32.0
Q ss_pred cchhhHHHHHHHHhc--cCCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 160 IGQESIFDDAWRCMI--EEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 160 vGr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+.|.+..+.+.+... .....+|.+.|+.|.||||+|++++...
T Consensus 375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 445555555555542 2344789999999999999999999998
No 447
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.35 E-value=0.13 Score=51.39 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
-.+++|+|+.|.|||||.+.++.-.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998765
No 448
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.33 E-value=0.13 Score=51.76 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=22.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44699999999999999999987654
No 449
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.33 E-value=0.39 Score=47.88 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=27.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEE
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVV 216 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 216 (922)
.+|.|.|+.|+||||+++.+.... . ...+..+....
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l-~-~~~~~~~~~~r 63 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETL-Q-QNGIDHITRTR 63 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHH-H-HTTCCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH-H-hcCCCeeeeec
Confidence 589999999999999999999987 2 33455344443
No 450
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=90.32 E-value=0.18 Score=54.76 Aligned_cols=102 Identities=10% Similarity=0.157 Sum_probs=56.6
Q ss_pred HHHHhcc-CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcc--------CCCc-eEEEEEeCCC-CCHHHHHHHHHhhccCC
Q 042817 169 AWRCMIE-EQVGIIGLYGAGGVGKTTLLKQLNNKLCQER--------HDFD-IVIWVVVSKD-LNLEKVQEDIGKKIDMF 237 (922)
Q Consensus 169 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------~~F~-~~~wv~~s~~-~~~~~~~~~i~~~l~~~ 237 (922)
.++.|.. ..-.-++|.|..|+|||+|+.++++.. ... ++-+ .++++-+.+. ..+.++.+.+.+.=.+.
T Consensus 137 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~-~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~ 215 (464)
T 3gqb_B 137 TIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQA-TVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALS 215 (464)
T ss_dssp HHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHC-BCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGG
T ss_pred eeecccccccCCEEEEecCCCCCchHHHHHHHHHH-HhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhccccc
Confidence 3444432 233467899999999999999998886 220 1112 5566666654 34556666654421010
Q ss_pred -----cccccCCChhh-----hHHHHHHHhc---CCcEEEEEccCCC
Q 042817 238 -----SESWKNKSPVE-----KSCAIFKILS---NKKFVLLLDDMWE 271 (922)
Q Consensus 238 -----~~~~~~~~~~~-----~~~~l~~~l~---~kr~LlVlDdv~~ 271 (922)
....+...... ..-.+.++++ ++.+|+++||+-.
T Consensus 216 rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 216 RSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp GEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 00001111111 1223555654 6899999999853
No 451
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.32 E-value=0.46 Score=60.67 Aligned_cols=88 Identities=15% Similarity=0.116 Sum_probs=57.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccc---cCCChhhhHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESW---KNKSPVEKSCAI 253 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 253 (922)
.-+++-|+|.+|+||||||.+++.... .. =..++|++.....+... ++.++...+.. ...+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~-~~--G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l 453 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ-RE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 453 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH-HT--TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH-Hh--CCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHH
Confidence 346999999999999999999888762 22 24688998887776532 45555433221 223445555555
Q ss_pred HHHhc-CCcEEEEEccCCCc
Q 042817 254 FKILS-NKKFVLLLDDMWEP 272 (922)
Q Consensus 254 ~~~l~-~kr~LlVlDdv~~~ 272 (922)
....+ .+.-++|+|-+...
T Consensus 454 ~~lv~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 454 DALARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTTC
T ss_pred HHHHHhcCCCEEEECCHHHh
Confidence 54443 45669999998643
No 452
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.31 E-value=0.13 Score=52.29 Aligned_cols=26 Identities=38% Similarity=0.638 Sum_probs=22.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34699999999999999999987654
No 453
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.29 E-value=0.33 Score=49.71 Aligned_cols=39 Identities=26% Similarity=0.423 Sum_probs=29.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCC
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKD 220 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~ 220 (922)
++|+|.|-||+||||+|..++.... . .=..++-|+....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la-~--~G~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH-A--MGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH-T--TTCCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH-H--CCCcEEEEcCCCC
Confidence 5788899999999999999998873 2 2235677776543
No 454
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.28 E-value=0.44 Score=46.73 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..|.|.|+.|+||||+++.+.+..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999987
No 455
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.22 E-value=0.13 Score=52.00 Aligned_cols=25 Identities=36% Similarity=0.559 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
-.+++|+|+.|.|||||++.++.-.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999987764
No 456
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.21 E-value=0.19 Score=51.30 Aligned_cols=26 Identities=35% Similarity=0.463 Sum_probs=23.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...++.+.|.||+||||++..++...
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 45788999999999999999999877
No 457
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.20 E-value=0.13 Score=56.48 Aligned_cols=25 Identities=36% Similarity=0.441 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..+|.|+|.+|+||||+|..++...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998877
No 458
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.17 E-value=0.43 Score=46.75 Aligned_cols=52 Identities=17% Similarity=0.170 Sum_probs=33.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGK 232 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 232 (922)
..|.|-|+.|+||||+++.+++.. . ...+..+++..-.....+.+..++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l-~-~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL-E-QLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH-H-HTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH-H-HcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 478999999999999999999987 3 234433333333233233444444443
No 459
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.12 E-value=0.18 Score=53.71 Aligned_cols=25 Identities=40% Similarity=0.575 Sum_probs=23.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..+++|+|+.|+||||+++.++...
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4699999999999999999999887
No 460
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=90.09 E-value=0.67 Score=51.43 Aligned_cols=58 Identities=24% Similarity=0.336 Sum_probs=41.1
Q ss_pred HHHHHhcc-CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCC-HHHHHHHH
Q 042817 168 DAWRCMIE-EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLN-LEKVQEDI 230 (922)
Q Consensus 168 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i 230 (922)
++++.|.. .+-..++|.|..|+|||+|+.++++.. +-+.++++-+.+... +.++.+.+
T Consensus 216 rvID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 34555543 234688999999999999999988764 235778888876654 55666665
No 461
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.09 E-value=0.14 Score=51.81 Aligned_cols=24 Identities=38% Similarity=0.620 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+++|+|+.|.|||||++.++.-.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 589999999999999999988765
No 462
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=90.08 E-value=0.085 Score=60.85 Aligned_cols=46 Identities=17% Similarity=0.222 Sum_probs=33.3
Q ss_pred CcccchhhHHHHHHHHhccCCee-----------EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 157 PRIIGQESIFDDAWRCMIEEQVG-----------IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~-----------vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+.++|.+..+..+.-.+..+..+ -|-++|++|+|||+||+++++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 45778887666665555433211 47899999999999999998765
No 463
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=89.99 E-value=0.33 Score=53.46 Aligned_cols=98 Identities=20% Similarity=0.225 Sum_probs=55.0
Q ss_pred HHHHhcc-CCeeEEEEEcCCCCcHHHHHH-HHHHHhhhccCCCc-eEEEEEeCCCC-CHHHHHHHHHhhccCCccc----
Q 042817 169 AWRCMIE-EQVGIIGLYGAGGVGKTTLLK-QLNNKLCQERHDFD-IVIWVVVSKDL-NLEKVQEDIGKKIDMFSES---- 240 (922)
Q Consensus 169 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~-~v~~~~~~~~~~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~---- 240 (922)
.++.+.. ..-..++|+|..|+|||+||. .+.+.. .-+ .++++-+.+.. .+.++.+.+...=.+....
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~a 226 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTA 226 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEE
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEE
Confidence 4455543 233578999999999999964 666654 234 34666666554 3556666665432111100
Q ss_pred ccCCChhhh------HHHHHHHh--cCCcEEEEEccCCC
Q 042817 241 WKNKSPVEK------SCAIFKIL--SNKKFVLLLDDMWE 271 (922)
Q Consensus 241 ~~~~~~~~~------~~~l~~~l--~~kr~LlVlDdv~~ 271 (922)
..+...... .-.+.+++ +++.+|+++||+-.
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 227 SASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 011111111 12344444 46899999999854
No 464
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.97 E-value=0.17 Score=52.60 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=23.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 176 EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 176 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+.-.+++|+|+.|.|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 344799999999999999999998765
No 465
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.94 E-value=0.2 Score=50.22 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...+|+|+|+.|.||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 44689999999999999999999876
No 466
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.89 E-value=0.14 Score=52.15 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=22.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 33689999999999999999998754
No 467
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.89 E-value=0.18 Score=51.29 Aligned_cols=112 Identities=13% Similarity=0.141 Sum_probs=58.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCC-CCCHHHHHHHHHhhccCCcccccCCChhhhHHHHH
Q 042817 176 EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSK-DLNLEKVQEDIGKKIDMFSESWKNKSPVEKSCAIF 254 (922)
Q Consensus 176 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 254 (922)
..-.+++|+|+.|.||||+++.+..... . .+.+.+++.-.. .+-... .+ .+ ..... -..+.......+.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~-~--~~~G~I~~~g~~i~~~~~~---~~--~~-v~q~~-~gl~~~~l~~~la 92 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN-Q--TKSYHIITIEDPIEYVFKH---KK--SI-VNQRE-VGEDTKSFADALR 92 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH-H--HCCCEEEEEESSCCSCCCC---SS--SE-EEEEE-BTTTBSCHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC-C--CCCCEEEEcCCcceeecCC---cc--ee-eeHHH-hCCCHHHHHHHHH
Confidence 3447999999999999999999988762 1 112333332111 000000 00 00 00000 0001123345667
Q ss_pred HHhcCCcEEEEEccCCCccccccccccCCCCCCCcEEEEEcCChhh
Q 042817 255 KILSNKKFVLLLDDMWEPVDLTKVGVPIPNSTNASKVVFTTRYKEV 300 (922)
Q Consensus 255 ~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTtR~~~v 300 (922)
..|..++=+|++|+.-+......+.... ..|.-|++||.+.++
T Consensus 93 ~aL~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 93 AALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHHHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred HHHhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 7776677789999986543332222111 235568888877654
No 468
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.88 E-value=0.14 Score=52.50 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=22.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999997654
No 469
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=89.88 E-value=0.31 Score=47.82 Aligned_cols=39 Identities=31% Similarity=0.205 Sum_probs=27.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCC
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKD 220 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~ 220 (922)
-.|.+.|.||+||||+|..++.... ...++ +..+.+...
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~--~~G~~-V~v~d~D~q 45 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQL--RQGVR-VMAGVVETH 45 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH--HTTCC-EEEEECCCT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH--HCCCC-EEEEEeCCC
Confidence 3578899999999999999988872 22333 445555443
No 470
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=89.86 E-value=0.34 Score=53.35 Aligned_cols=98 Identities=16% Similarity=0.227 Sum_probs=54.9
Q ss_pred HHHHhcc-CCeeEEEEEcCCCCcHHHHHH-HHHHHhhhccCCCc-eEEEEEeCCCC-CHHHHHHHHHhhccCCcc----c
Q 042817 169 AWRCMIE-EQVGIIGLYGAGGVGKTTLLK-QLNNKLCQERHDFD-IVIWVVVSKDL-NLEKVQEDIGKKIDMFSE----S 240 (922)
Q Consensus 169 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~-~v~~~~~~~~~~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~ 240 (922)
.++.+.. ..-..++|+|..|+|||+||. .+.+.. .-+ .++++-+.+.. .+.++.+.+...=.+... .
T Consensus 165 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~a 239 (515)
T 2r9v_A 165 AIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVA 239 (515)
T ss_dssp HHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEE
T ss_pred ccccccccccCCEEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEE
Confidence 4455542 233578999999999999964 666654 245 34666666554 455666666542111100 0
Q ss_pred ccCCChh-h-----hHHHHHHHh--cCCcEEEEEccCCC
Q 042817 241 WKNKSPV-E-----KSCAIFKIL--SNKKFVLLLDDMWE 271 (922)
Q Consensus 241 ~~~~~~~-~-----~~~~l~~~l--~~kr~LlVlDdv~~ 271 (922)
..+.... . ..-.+.+++ +++.+|+++||+-.
T Consensus 240 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 240 SASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 0111111 1 112344444 46899999999854
No 471
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.86 E-value=0.17 Score=49.17 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
-.|+|+|.+|+|||||.+.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998763
No 472
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.84 E-value=0.15 Score=51.77 Aligned_cols=24 Identities=38% Similarity=0.566 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+++|+|+.|.|||||.+.++.-.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999988764
No 473
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.81 E-value=0.15 Score=52.59 Aligned_cols=25 Identities=48% Similarity=0.494 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
-.+++|+|+.|.|||||++.++.-.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3589999999999999999988764
No 474
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=89.81 E-value=0.51 Score=45.66 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.|+|=|.-|+||||.++.+++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47788999999999999999988
No 475
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.75 E-value=0.15 Score=52.25 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=22.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 33589999999999999999987654
No 476
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.70 E-value=0.21 Score=46.14 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.-|.|+|.+|+|||||+..+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999988653
No 477
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.55 E-value=0.23 Score=46.49 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNK 201 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~ 201 (922)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
No 478
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=89.55 E-value=0.33 Score=50.30 Aligned_cols=40 Identities=28% Similarity=0.433 Sum_probs=29.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCC
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKD 220 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~ 220 (922)
.++|+|.|-||+||||+|..++..... .+ ..++-|+....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~-~G--~rVlliD~D~q 41 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAE-MG--KKVMIVGCDPK 41 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHH-TT--CCEEEEEECSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHH-CC--CeEEEEecCCC
Confidence 468888999999999999999988732 21 24666765543
No 479
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.54 E-value=0.19 Score=51.49 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.++|+|+.|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999876
No 480
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.48 E-value=0.2 Score=53.86 Aligned_cols=27 Identities=26% Similarity=0.102 Sum_probs=23.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 176 EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 176 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
....+++|+|++|.|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345699999999999999999999765
No 481
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.36 E-value=0.23 Score=53.38 Aligned_cols=24 Identities=42% Similarity=0.595 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+|+|.|+.|+||||||..++...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 589999999999999999999886
No 482
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=89.35 E-value=0.33 Score=53.50 Aligned_cols=89 Identities=15% Similarity=0.203 Sum_probs=50.1
Q ss_pred eeEEEEEcCCCCcHHHHH-HHHHHHhhhccCCCc-eEEEEEeCCCC-CHHHHHHHHHhhccCCc-----ccccC-----C
Q 042817 178 VGIIGLYGAGGVGKTTLL-KQLNNKLCQERHDFD-IVIWVVVSKDL-NLEKVQEDIGKKIDMFS-----ESWKN-----K 244 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~-----~ 244 (922)
-..++|+|..|+|||+|| ..+.+.. . -+ .++++-+.+.. .+.++.+.+...=.+.. ...+. .
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~---~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~ 237 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQ---G--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQY 237 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCC---T--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTT
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhh---c--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHH
Confidence 356889999999999996 4666654 2 34 34666666553 35556655544211100 00011 1
Q ss_pred ChhhhHHHHHHHh--cCCcEEEEEccCCC
Q 042817 245 SPVEKSCAIFKIL--SNKKFVLLLDDMWE 271 (922)
Q Consensus 245 ~~~~~~~~l~~~l--~~kr~LlVlDdv~~ 271 (922)
......-.+.+++ +++.+|+++||+-.
T Consensus 238 ~a~~~a~tiAEyfrd~G~dVLli~Dsltr 266 (507)
T 1fx0_A 238 LAPYTGAALAEYFMYRERHTLIIYDDLSK 266 (507)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 1111222333444 57999999999843
No 483
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.26 E-value=0.17 Score=48.51 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+.|.|.|+.|+||||||.++....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 578899999999999999998764
No 484
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=89.25 E-value=0.27 Score=53.41 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=22.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHH
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNK 201 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~ 201 (922)
...+++|+|..|+|||||.+.+...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 4569999999999999999999874
No 485
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.11 E-value=0.25 Score=49.61 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
..|+|.|..|+||||+++.+++..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc
Confidence 579999999999999999999886
No 486
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.10 E-value=0.6 Score=59.59 Aligned_cols=85 Identities=15% Similarity=0.144 Sum_probs=59.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhccCCCceEEEEEeCCCCCHHHHHHHHHhhccCCcccc---cCCChhhhHHHHH
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNKLCQERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDMFSESW---KNKSPVEKSCAIF 254 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~ 254 (922)
-++|-|+|+.|.||||||.++..... ..=...+|++..+..+..- ++.++...+.. .....++....+.
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~---~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH---hcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 47999999999999999999887662 2335688998888777664 66666554432 2334455566666
Q ss_pred HHhcC-CcEEEEEccCC
Q 042817 255 KILSN-KKFVLLLDDMW 270 (922)
Q Consensus 255 ~~l~~-kr~LlVlDdv~ 270 (922)
..++. ..-++|+|-|.
T Consensus 1503 ~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHHTCCSEEEESCST
T ss_pred HHHHcCCCCEEEEccHH
Confidence 66654 56699999884
No 487
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.02 E-value=0.19 Score=47.97 Aligned_cols=22 Identities=45% Similarity=0.597 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNK 201 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~ 201 (922)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988763
No 488
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.98 E-value=0.59 Score=50.97 Aligned_cols=28 Identities=36% Similarity=0.401 Sum_probs=24.6
Q ss_pred cCCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 175 EEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 175 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
...-.+++|+|+.|.||||+++.+....
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 3455799999999999999999999876
No 489
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=88.95 E-value=0.42 Score=53.26 Aligned_cols=41 Identities=29% Similarity=0.471 Sum_probs=31.3
Q ss_pred chhhHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 161 GQESIFDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 161 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
+....++.+...+.+.. +.+.|.|.+|.||||++.++....
T Consensus 29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34455566666665433 489999999999999999999887
No 490
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.90 E-value=0.19 Score=51.21 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHH
Q 042817 178 VGIIGLYGAGGVGKTTLLKQLNNK 201 (922)
Q Consensus 178 ~~vi~I~G~gGiGKTtLa~~v~~~ 201 (922)
-.+++|+|+.|.|||||++.++.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999988754
No 491
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.84 E-value=0.18 Score=55.45 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=23.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 176 EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 176 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
....+|.|+|++|.||||+|+.++...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 355799999999999999999988765
No 492
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=88.83 E-value=0.39 Score=48.45 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=28.1
Q ss_pred HHHHHHhccC--CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 167 DDAWRCMIEE--QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 167 ~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.-+..+|... ...-|.++|++|.|||.+|.++++..
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 4456666543 24579999999999999999999874
No 493
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=88.75 E-value=0.33 Score=50.63 Aligned_cols=33 Identities=30% Similarity=0.377 Sum_probs=26.7
Q ss_pred HHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 166 FDDAWRCMIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 166 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
++++.+.+.. .+++|+|+.|+|||||.+.+. ..
T Consensus 156 i~~L~~~l~G---~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLEG---FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTTT---CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhccC---cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 5566666643 489999999999999999998 54
No 494
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=88.69 E-value=0.34 Score=54.95 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=23.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.-.+|+|+|+.|.|||||++.++...
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 34689999999999999999999987
No 495
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=88.63 E-value=0.43 Score=45.75 Aligned_cols=26 Identities=31% Similarity=0.290 Sum_probs=22.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
....|+|+|.+|+|||||...+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999988764
No 496
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=88.62 E-value=0.24 Score=47.17 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 179 ~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.+.+|+|..|.|||||+.+++--.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 388999999999999999998765
No 497
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.62 E-value=0.24 Score=45.94 Aligned_cols=23 Identities=43% Similarity=0.576 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042817 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 180 vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
-|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998764
No 498
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=88.60 E-value=0.22 Score=52.88 Aligned_cols=26 Identities=42% Similarity=0.469 Sum_probs=22.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 042817 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (922)
Q Consensus 177 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 202 (922)
.-.+++|+|+.|.|||||.+.++.-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 33689999999999999999998765
No 499
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=88.56 E-value=0.37 Score=52.71 Aligned_cols=102 Identities=10% Similarity=0.105 Sum_probs=57.8
Q ss_pred HHHHhcc-CCeeEEEEEcCCCCcHHHHHHHHHHHhhhccC--CCceEEEEEeCCCC-CHHHHHHHHHhhccCCcc----c
Q 042817 169 AWRCMIE-EQVGIIGLYGAGGVGKTTLLKQLNNKLCQERH--DFDIVIWVVVSKDL-NLEKVQEDIGKKIDMFSE----S 240 (922)
Q Consensus 169 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~ 240 (922)
.++.|.. ..-..++|.|..|+|||+|+.++++.. ...+ .=+.++++-+.+.. .+.++.+++...=.+... .
T Consensus 142 ~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~-~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~ 220 (469)
T 2c61_A 142 TIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQA-SVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLN 220 (469)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHC-BCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEE
T ss_pred eeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHH-hhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEE
Confidence 3455543 233567889999999999999999886 2111 11356666665543 456666666543111100 0
Q ss_pred ccCCChh------hhHHHHHHHhc---CCcEEEEEccCCC
Q 042817 241 WKNKSPV------EKSCAIFKILS---NKKFVLLLDDMWE 271 (922)
Q Consensus 241 ~~~~~~~------~~~~~l~~~l~---~kr~LlVlDdv~~ 271 (922)
..+.... ...-.+.++++ ++.+|+++||+-.
T Consensus 221 tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~DsltR 260 (469)
T 2c61_A 221 LADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITN 260 (469)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHHH
Confidence 0111111 11233455554 6999999999743
No 500
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=88.52 E-value=0.46 Score=52.37 Aligned_cols=102 Identities=13% Similarity=0.189 Sum_probs=56.5
Q ss_pred HHHHhcc-CCeeEEEEEcCCCCcHHHHH-HHHHHHhhhc----cCCCc-eEEEEEeCCCC-CHHHHHHHHHhhccCCcc-
Q 042817 169 AWRCMIE-EQVGIIGLYGAGGVGKTTLL-KQLNNKLCQE----RHDFD-IVIWVVVSKDL-NLEKVQEDIGKKIDMFSE- 239 (922)
Q Consensus 169 l~~~L~~-~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~----~~~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~- 239 (922)
.++.+.. ..-..++|+|..|+|||+|| ..+.+.. .. ..+-+ .++++-+.+.. .+.++.+.+...=.+...
T Consensus 152 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~-~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tv 230 (510)
T 2ck3_A 152 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQK-RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTI 230 (510)
T ss_dssp HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTH-HHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEE
T ss_pred eeccccccccCCEEEEecCCCCCchHHHHHHHHHHH-hhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccce
Confidence 4455543 23357899999999999995 5677765 21 12234 46677776654 455666666542111100
Q ss_pred ---cccCCChhh------hHHHHHHHh--cCCcEEEEEccCCC
Q 042817 240 ---SWKNKSPVE------KSCAIFKIL--SNKKFVLLLDDMWE 271 (922)
Q Consensus 240 ---~~~~~~~~~------~~~~l~~~l--~~kr~LlVlDdv~~ 271 (922)
...+..... ..-.+.+++ +++.+|+++||+-.
T Consensus 231 vV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 231 VVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 001111111 112344444 46899999999854
Done!