BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042818
(440 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KVM|A Chain A, Solution Structure Of The Cbx7 Chromodomain In Complex
With A H3k27me2 Peptide
Length = 74
Score = 62.4 bits (150), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
Query: 96 ERPKLDEGFFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAFEE 154
E + E F +E+IR+KRVRKG+++YL+KW+GWP +TWEP E++ ++ A+EE
Sbjct: 5 ELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILD-PRLVMAYEE 62
>pdb|2L12|A Chain A, Solution Nmr Structure Of The Chromobox Protein 7 With
H3k9me3
pdb|2L1B|A Chain A, Solution Nmr Structure Of The Chromobox Protein Cbx7 With
H3k27me3
Length = 56
Score = 62.4 bits (150), Expect = 5e-10, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 40/53 (75%), Gaps = 1/53 (1%)
Query: 102 EGFFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAFEE 154
E F +E+IR+KRVRKG+++YL+KW+GWP +TWEP E++ ++ A+EE
Sbjct: 2 EQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILD-PRLVMAYEE 53
>pdb|2K1B|A Chain A, Solution Nmr Structure Of The Chromo Domain Of The
Chromobox Protein Homolog 7
Length = 73
Score = 62.0 bits (149), Expect = 7e-10, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 40/53 (75%), Gaps = 1/53 (1%)
Query: 102 EGFFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAFEE 154
E F +E+IR+KRVRKG+++YL+KW+GWP +TWEP E++ ++ A+EE
Sbjct: 19 EQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILD-PRLVMAYEE 70
>pdb|3I8Z|A Chain A, Crystal Structure Of Human Chromobox Homolog 4 (Cbx4)
Length = 55
Score = 60.8 bits (146), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/41 (56%), Positives = 32/41 (78%)
Query: 102 EGFFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENL 142
E F +E+I +KR+RKG+++YL+KWRGW NTWEP EN+
Sbjct: 1 EHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENI 41
>pdb|3I91|A Chain A, Crystal Structure Of Human Chromobox Homolog 8 (Cbx8) With
H3k9 Peptide
pdb|3I91|B Chain B, Crystal Structure Of Human Chromobox Homolog 8 (Cbx8) With
H3k9 Peptide
Length = 54
Score = 58.5 bits (140), Expect = 6e-09, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Query: 102 EGFFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAFEE 154
E F EA+ ++R+RKG+++YL+KW+GW + +TWEP EN+ + ++ AFEE
Sbjct: 1 ERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILD-ARLLAAFEE 52
>pdb|2K28|A Chain A, Solution Nmr Structure Of The Chromo Domain Of The
Chromobox Protein Homolog 4
Length = 60
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 32/41 (78%)
Query: 102 EGFFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENL 142
E F +E+I +KR+RKG+++YL+KWRGW NTWEP EN+
Sbjct: 3 EHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENI 43
>pdb|3I90|A Chain A, Crystal Structure Of Human Chromobox Homolog 6 (Cbx6) With
H3k27 Peptide
pdb|3I90|B Chain B, Crystal Structure Of Human Chromobox Homolog 6 (Cbx6) With
H3k27 Peptide
Length = 51
Score = 57.8 bits (138), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/50 (48%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 105 FEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAFEE 154
F E+I ++R+RKG+++YL+KW+GW +TWEP EN+ S +I AFE+
Sbjct: 3 FAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILD-SRLIAAFEQ 51
>pdb|3H91|A Chain A, Crystal Structure Of The Complex Of Human Chromobox
Homolog 2 (Cbx2) And H3k27 Peptide
pdb|3H91|B Chain B, Crystal Structure Of The Complex Of Human Chromobox
Homolog 2 (Cbx2) And H3k27 Peptide
Length = 54
Score = 57.4 bits (137), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/41 (56%), Positives = 29/41 (70%)
Query: 102 EGFFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENL 142
E F E I KR+RKG+L+YL+KWRGW N+WEP EN+
Sbjct: 1 EQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENI 41
>pdb|1KNA|A Chain A, Chromo Domain Of Hp1 Complexed With Histone H3 Tail
Containing Dimethyllysine 9.
pdb|1KNE|A Chain A, Chromo Domain Of Hp1 Complexed With Histone H3 Tail
Containing Trimethyllysine 9
pdb|1Q3L|A Chain A, Chromodomain Of Hp1 Complexed With Histone H3 Tail
Containing Monomethyllysine 9
Length = 69
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 105 FEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAFE 153
+ +E I +RVRKG ++Y +KW+G+PE NTWEP NL C D+I +E
Sbjct: 17 YAVEKIIDRRVRKGMVEYYLKWKGYPETENTWEPENNL-DCQDLIQQYE 64
>pdb|2DNV|A Chain A, Solution Structure Of Rsgi Ruh-055, A Chromo Domain From
Mus Musculus Cdna
Length = 64
Score = 56.2 bits (134), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
Query: 102 EGFFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAFE 153
E F EA+ ++R+RKG+++YL+KW+GW + +TWEP EN+ + ++ AFE
Sbjct: 8 ERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILD-ARLLAAFE 58
>pdb|3GV6|A Chain A, Crystal Structure Of Human Chromobox Homolog 6 (Cbx6) With
H3k9 Peptide
Length = 58
Score = 56.2 bits (134), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Query: 102 EGFFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAFEE 154
E F E+I ++R+RKG+++YL+KW+GW +TWEP EN+ S +I AFE+
Sbjct: 1 ERVFAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILD-SRLIAAFEQ 52
>pdb|2D9U|A Chain A, Solution Structure Of The Chromo Domain Of Chromobox
Homolog 2 From Human
Length = 74
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 29/41 (70%)
Query: 102 EGFFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENL 142
E F E I KR+RKG+L+YL+KWRGW N+WEP EN+
Sbjct: 8 EQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENI 48
>pdb|3TZD|A Chain A, Crystal Structure Of The Complex Of Human Chromobox
Homolog 3 (cbx3)
Length = 58
Score = 52.8 bits (125), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 102 EGFFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAF 152
+G F +E + +RV G+++Y +KW+G+ + NTWEP ENL C ++I+AF
Sbjct: 4 QGEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENL-DCPELIEAF 53
>pdb|3F2U|A Chain A, Crystal Structure Of Human Chromobox Homolog 1 (Cbx1)
Length = 55
Score = 52.0 bits (123), Expect = 7e-07, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 103 GFFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAF 152
G + +E + +RV KG+++YL+KW+G+ + NTWEP ENL C D+I F
Sbjct: 1 GEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEF 49
>pdb|3FDT|A Chain A, Crystal Structure Of The Complex Of Human Chromobox
Homolog 5 (Cbx5) With H3k9(Me)3 Peptide
Length = 59
Score = 51.6 bits (122), Expect = 8e-07, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 105 FEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAF 152
+ +E + +RV KGQ++YL+KW+G+ E NTWEP +NL C ++I F
Sbjct: 4 YVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNL-DCPELISEF 50
>pdb|2L11|A Chain A, Solution Nmr Structure Of The Cbx3 In Complex With H3k9me3
Peptide
Length = 54
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 103 GFFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAF 152
G F +E + +RV G+++Y +KW+G+ + NTWEP ENL C ++I+AF
Sbjct: 1 GEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENL-DCPELIEAF 49
>pdb|3DM1|A Chain A, Crystal Structure Of The Complex Of Human Chromobox
Homolog 3 (cbx3) With Peptide
pdb|3DM1|C Chain C, Crystal Structure Of The Complex Of Human Chromobox
Homolog 3 (cbx3) With Peptide
pdb|3DM1|E Chain E, Crystal Structure Of The Complex Of Human Chromobox
Homolog 3 (cbx3) With Peptide
pdb|3DM1|G Chain G, Crystal Structure Of The Complex Of Human Chromobox
Homolog 3 (cbx3) With Peptide
Length = 58
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 105 FEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAF 152
F +E + +RV G+++Y +KW+G+ + NTWEP ENL C ++I+AF
Sbjct: 2 FVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENL-DCPELIEAF 48
>pdb|4HAE|A Chain A, Crystal Structure Of The Cdyl2-Chromodomain
Length = 81
Score = 48.5 bits (114), Expect = 7e-06, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 104 FFEIEAIRRKRV-RKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAF 152
+E+E I KR +KG+ +YLI+W+G+ +TWEP +L C + ID F
Sbjct: 23 LYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEF 72
>pdb|1AP0|A Chain A, Structure Of The Chromatin Binding (Chromo) Domain From
Mouse Modifier Protein 1, Nmr, 26 Structures
pdb|1GUW|A Chain A, Structure Of The Chromodomain From Mouse Hp1beta In
Complex With The Lysine 9-Methyl Histone H3 N-Terminal
Peptide, Nmr, 25 Structures
Length = 73
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
Query: 113 KRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAF 152
+RV KG+++YL+KW+G+ + NTWEP ENL C D+I F
Sbjct: 22 RRVVKGKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEF 60
>pdb|1PFB|A Chain A, Structural Basis For Specific Binding Of Polycomb
Chromodomain To Histone H3 Methylated At K27
Length = 55
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 105 FEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAFEE 154
+ E I +KRV+KG ++Y +KW+GW + NTWEP N+ +ID +E+
Sbjct: 4 YAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNILD-RRLIDIYEQ 52
>pdb|2DNT|A Chain A, Solution Structure Of Rsgi Ruh-064, A Chromo Domain From
Human Cdna
Length = 78
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 102 EGFFEIEAIRRKRV-RKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAF 152
E +E+E I KR +KG+ +YL++W+G+ +TWEP ++L +C + I F
Sbjct: 11 EELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDF 62
>pdb|1PDQ|A Chain A, Polycomb Chromodomain Complexed With The Histone H3 Tail
Containing Trimethyllysine 27
Length = 72
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 105 FEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAFEE 154
+ E I +KRV+KG ++Y +KW+GW + NTWEP N+ +ID +E+
Sbjct: 21 YAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNILD-RRLIDIYEQ 69
>pdb|3QO2|A Chain A, Structural Insights For Mpp8 Chromodomain Interaction With
Histone H3 Lysine 9
pdb|3QO2|B Chain B, Structural Insights For Mpp8 Chromodomain Interaction With
Histone H3 Lysine 9
pdb|3QO2|C Chain C, Structural Insights For Mpp8 Chromodomain Interaction With
Histone H3 Lysine 9
pdb|3QO2|D Chain D, Structural Insights For Mpp8 Chromodomain Interaction With
Histone H3 Lysine 9
Length = 64
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 33/55 (60%)
Query: 100 LDEGFFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAFEE 154
+ E FE+E I + G++ Y ++W+G+ + +TWEP +L+ C +V+ F +
Sbjct: 2 MGEDVFEVEKILDMKTEGGKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEFRK 56
>pdb|3MTS|A Chain A, Chromo Domain Of Human Histone-lysine N-methyltransferase
Suv39h1
pdb|3MTS|B Chain B, Chromo Domain Of Human Histone-lysine N-methyltransferase
Suv39h1
pdb|3MTS|C Chain C, Chromo Domain Of Human Histone-lysine N-methyltransferase
Suv39h1
Length = 64
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
Query: 113 KRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAFEE 154
K++R+ Q YL+KWRG+P++ +TWEP +NL+ C ++ F +
Sbjct: 10 KKIRE-QEYYLVKWRGYPDSESTWEPRQNLK-CVRILKQFHK 49
>pdb|3LWE|A Chain A, The Crystal Structure Of Mpp8
pdb|3LWE|B Chain B, The Crystal Structure Of Mpp8
pdb|3R93|A Chain A, Crystal Structure Of The Chromo Domain Of M-Phase
Phosphoprotein 8 Bound To H3k9me3 Peptide
pdb|3R93|B Chain B, Crystal Structure Of The Chromo Domain Of M-Phase
Phosphoprotein 8 Bound To H3k9me3 Peptide
pdb|3R93|C Chain C, Crystal Structure Of The Chromo Domain Of M-Phase
Phosphoprotein 8 Bound To H3k9me3 Peptide
pdb|3R93|D Chain D, Crystal Structure Of The Chromo Domain Of M-Phase
Phosphoprotein 8 Bound To H3k9me3 Peptide
pdb|3SVM|A Chain A, Human Mpp8 - Human Dnmt3ak47me2 Peptide
Length = 62
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 32/53 (60%)
Query: 102 EGFFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAFEE 154
E FE+E I + G++ Y ++W+G+ + +TWEP +L+ C +V+ F +
Sbjct: 2 EDVFEVEKILDMKTEGGKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEFRK 54
>pdb|2B2U|A Chain A, Tandem Chromodomains Of Human Chd1 Complexed With Histone
H3 Tail Containing Trimethyllysine 4 And
Dimethylarginine 2
pdb|2B2U|B Chain B, Tandem Chromodomains Of Human Chd1 Complexed With Histone
H3 Tail Containing Trimethyllysine 4 And
Dimethylarginine 2
pdb|2B2V|A Chain A, Crystal Structure Analysis Of Human Chd1 Chromodomains 1
And 2 Bound To Histone H3 Resi 1-15 Mek4
pdb|2B2V|B Chain B, Crystal Structure Analysis Of Human Chd1 Chromodomains 1
And 2 Bound To Histone H3 Resi 1-15 Mek4
pdb|2B2W|A Chain A, Tandem Chromodomains Of Human Chd1 Complexed With Histone
H3 Tail Containing Trimethyllysine 4
pdb|2B2W|B Chain B, Tandem Chromodomains Of Human Chd1 Complexed With Histone
H3 Tail Containing Trimethyllysine 4
pdb|2B2Y|A Chain A, Tandem Chromodomains Of Human Chd1
pdb|2B2Y|B Chain B, Tandem Chromodomains Of Human Chd1
Length = 187
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 118 GQLQYLIKWRGWPENANTWEPLENLQ 143
G++QYLIKW+GW NTWE E L+
Sbjct: 56 GEIQYLIKWKGWSHIHNTWETEETLK 81
>pdb|2B2T|A Chain A, Tandem Chromodomains Of Human Chd1 Complexed With Histone
H3 Tail Containing Trimethyllysine 4 And
Phosphothreonine 3
pdb|2B2T|B Chain B, Tandem Chromodomains Of Human Chd1 Complexed With Histone
H3 Tail Containing Trimethyllysine 4 And
Phosphothreonine 3
Length = 187
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 118 GQLQYLIKWRGWPENANTWEPLENLQ 143
G++QYLIKW+GW NTWE E L+
Sbjct: 56 GEIQYLIKWKGWSHIHNTWETEETLK 81
>pdb|2B2U|C Chain C, Tandem Chromodomains Of Human Chd1 Complexed With Histone
H3 Tail Containing Trimethyllysine 4 And
Dimethylarginine 2
pdb|2B2V|C Chain C, Crystal Structure Analysis Of Human Chd1 Chromodomains 1
And 2 Bound To Histone H3 Resi 1-15 Mek4
pdb|2B2W|C Chain C, Tandem Chromodomains Of Human Chd1 Complexed With Histone
H3 Tail Containing Trimethyllysine 4
pdb|2B2Y|C Chain C, Tandem Chromodomains Of Human Chd1
Length = 115
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 113 KRVRKGQLQYLIKWRGWPENANTWEPLENLQ 143
K G++QYLIKW+GW NTWE E L+
Sbjct: 51 KNKEPGEIQYLIKWKGWSHIHNTWETEETLK 81
>pdb|2B2T|C Chain C, Tandem Chromodomains Of Human Chd1 Complexed With Histone
H3 Tail Containing Trimethyllysine 4 And
Phosphothreonine 3
Length = 115
Score = 38.5 bits (88), Expect = 0.007, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 113 KRVRKGQLQYLIKWRGWPENANTWEPLENLQ 143
K G++QYLIKW+GW NTWE E L+
Sbjct: 51 KNKEPGEIQYLIKWKGWSHIHNTWETEETLK 81
>pdb|2RSN|A Chain A, Solution Structure Of The Chromodomain Of Chp1 In Complex
With H3k9me3 Peptide
Length = 75
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 101 DEGFFEIEAIRRKRVRK-GQLQYLIKWRGWPENANTWEPLENL 142
D +E+E I RV K G +Y IKW G+ NTWEP +NL
Sbjct: 18 DADVYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNL 60
>pdb|3G7L|A Chain A, Chromodomain Of Chp1 In Complex With Histone H3k9me3
Peptide
Length = 61
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 101 DEGFFEIEAIRRKRVRK-GQLQYLIKWRGWPENANTWEPLENL 142
D +E+E I RV K G +Y IKW G+ NTWEP +NL
Sbjct: 4 DADVYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNL 46
>pdb|1G6Z|A Chain A, Solution Structure Of The Clr4 Chromo Domain
Length = 70
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 4/58 (6%)
Query: 98 PKLDEGFFEIEAIRRKRV-RKGQLQ-YLIKWRGWPENANTWEPLENLQSCSDVIDAFE 153
PK +E +E+E I +++ R G ++ Y I+W + ++TWEP ENL CS V+ ++
Sbjct: 4 PKQEE--YEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENLSGCSAVLAEWK 59
>pdb|4FT2|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4FT2|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4FT4|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
pdb|4FT4|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
Length = 784
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 116 RKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAF 152
R+ + + ++W G+ +TWEP++NL C I F
Sbjct: 328 RENGIYFKVQWEGYGPEEDTWEPIDNLSDCPQKIREF 364
>pdb|4FSX|A Chain A, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In
Complex With Sah
pdb|4FSX|B Chain B, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In
Complex With Sah
Length = 784
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 116 RKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAF 152
R+ + + ++W G+ +TWEP++NL C I F
Sbjct: 328 RENGIYFKVQWEGYGPEEDTWEPIDNLSDCPQKIREF 364
>pdb|2RSO|A Chain A, Solution Structure Of The Chromodomain Of Swi6
Length = 92
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 108 EAIRRKRVRKGQ-LQYLIKWRGWPENA-NTWEPLENLQSCSDVIDAF 152
+ ++ + RKG +YL+KW G+ + + NTW + C +I+A+
Sbjct: 35 KVLKHRMARKGGGYEYLLKWEGYDDPSDNTWSSEADCSGCKQLIEAY 81
>pdb|3II1|A Chain A, Structural Characterization Of Difunctional Glucanase-
Xylanse Celm2
Length = 535
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 386 DFSASVSDNMQDVVVTFMAVRS-DGK-EVMVDNKYLKANNP--LLLINFYEQ 433
D S + + D V F AVRS DG VMV NKYL N P + L NF Q
Sbjct: 439 DTSVTATAPNPDNVSAFAAVRSSDGALTVMVINKYLSGNTPATINLSNFTAQ 490
>pdb|3FW6|A Chain A, Crystal Structure Of Celm2, A Bifunctional Glucanase-
Xylanase Protein From A Metagenome Library
Length = 534
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 386 DFSASVSDNMQDVVVTFMAVRS-DGK-EVMVDNKYLKANNP--LLLINFYEQ 433
D S + + D V F AVRS DG VMV NKYL N P + L NF Q
Sbjct: 439 DTSVTATAPNPDNVSAFAAVRSSDGALTVMVINKYLSGNTPATINLSNFTAQ 490
>pdb|2F5K|A Chain A, Crystal Structure Of The Chromo Domain Of Human Mrg15
pdb|2F5K|B Chain B, Crystal Structure Of The Chromo Domain Of Human Mrg15
pdb|2F5K|C Chain C, Crystal Structure Of The Chromo Domain Of Human Mrg15
pdb|2F5K|D Chain D, Crystal Structure Of The Chromo Domain Of Human Mrg15
pdb|2F5K|E Chain E, Crystal Structure Of The Chromo Domain Of Human Mrg15
pdb|2F5K|F Chain F, Crystal Structure Of The Chromo Domain Of Human Mrg15
Length = 102
Score = 30.0 bits (66), Expect = 2.6, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 11/58 (18%)
Query: 91 AVPQEERPKLDEG----------FFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEP 138
A Q+ +PK EG +E + ++ ++ Q++Y I + GW +N + W P
Sbjct: 14 APKQDPKPKFQEGERVLCFHGPLLYEAKCVKVA-IKDKQVKYFIHYSGWNKNWDEWVP 70
>pdb|2EE1|A Chain A, Solution Structures Of The Chromo Domain Of Human
Chromodomain Helicase-Dna-Binding Protein 4
Length = 64
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 116 RKGQLQYLIKWRGWPENANTWE 137
+KG + YLIKWR P + +WE
Sbjct: 24 KKGHVHYLIKWRDLPYDQASWE 45
>pdb|1PG8|A Chain A, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|B Chain B, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|C Chain C, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|D Chain D, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
Length = 398
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 350 GCDSADEQLGIGNSSHKSKHEGPINASAIVKILKP----IDFSASVSDNMQ--DVVVTFM 403
GC A GIG K +H + A+ + P I F + + NM D+
Sbjct: 115 GCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAK 174
Query: 404 AVRSDGKEVMVDNKY 418
R G V+VDN Y
Sbjct: 175 IARKHGATVVVDNTY 189
>pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1UKJ|A Chain A, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|B Chain B, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|C Chain C, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|D Chain D, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|2O7C|A Chain A, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|B Chain B, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|C Chain C, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|D Chain D, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
Length = 398
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 350 GCDSADEQLGIGNSSHKSKHEGPINASAIVKILKP----IDFSASVSDNMQ--DVVVTFM 403
GC A GIG K +H + A+ + P I F + + NM D+
Sbjct: 115 GCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAK 174
Query: 404 AVRSDGKEVMVDNKY 418
R G V+VDN Y
Sbjct: 175 IARKHGATVVVDNTY 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.130 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,227,558
Number of Sequences: 62578
Number of extensions: 348103
Number of successful extensions: 635
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 598
Number of HSP's gapped (non-prelim): 47
length of query: 440
length of database: 14,973,337
effective HSP length: 102
effective length of query: 338
effective length of database: 8,590,381
effective search space: 2903548778
effective search space used: 2903548778
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)