Query 042818
Match_columns 440
No_of_seqs 210 out of 1076
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 17:10:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042818.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042818hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lwe_A M-phase phosphoprotein 99.7 3.8E-19 1.3E-23 137.5 3.6 59 101-159 1-59 (62)
2 1ap0_A Modifier protein 1; chr 99.7 2.5E-18 8.4E-23 136.9 7.9 62 99-161 8-69 (73)
3 2rso_A Chromatin-associated pr 99.7 1.3E-18 4.4E-23 144.6 5.9 58 101-158 27-87 (92)
4 3fdt_A Chromobox protein homol 99.7 2.1E-18 7.1E-23 132.2 5.4 57 103-160 2-58 (59)
5 3f2u_A Chromobox protein homol 99.7 3.1E-18 1E-22 129.5 4.9 54 103-157 1-54 (55)
6 3i91_A Chromobox protein homol 99.7 6.1E-18 2.1E-22 127.2 6.4 53 102-155 1-53 (54)
7 2rsn_A Chromo domain-containin 99.7 6.5E-18 2.2E-22 135.7 6.9 56 101-156 18-74 (75)
8 3h91_A Chromobox protein homol 99.7 9.3E-18 3.2E-22 126.4 6.2 53 102-155 1-53 (54)
9 1q3l_A Heterochromatin protein 99.7 1.2E-17 4.3E-22 132.7 6.0 56 100-156 12-67 (69)
10 1pfb_A Polycomb protein; chrom 99.7 1.2E-17 4.1E-22 126.1 5.2 54 102-156 1-54 (55)
11 2d9u_A Chromobox protein homol 99.7 3.8E-17 1.3E-21 130.4 7.9 60 100-160 6-65 (74)
12 2dnt_A Chromodomain protein, Y 99.7 1.5E-17 5.3E-22 133.7 5.6 60 99-158 8-68 (78)
13 2dnv_A Chromobox protein homol 99.7 9E-18 3.1E-22 130.5 4.1 58 100-158 6-63 (64)
14 2kvm_A Chromobox protein homol 99.7 2.7E-17 9.1E-22 131.1 6.7 62 96-158 5-66 (74)
15 1pdq_A Polycomb protein; methy 99.7 1.7E-17 5.7E-22 133.0 5.2 59 97-156 13-71 (72)
16 3g7l_A Chromo domain-containin 99.7 1.8E-17 6.3E-22 127.9 5.2 55 101-156 4-59 (61)
17 1g6z_A CLR4 protein; transfera 99.7 5.7E-18 2E-22 133.5 2.3 59 100-158 4-64 (70)
18 2k1b_A Chromobox protein homol 99.7 1.2E-17 4.2E-22 133.9 4.1 60 96-156 13-72 (73)
19 3mts_A Histone-lysine N-methyl 99.7 8.6E-18 2.9E-22 131.4 1.6 57 106-163 2-58 (64)
20 4hae_A CDY-like 2, chromodomai 99.6 7.8E-18 2.7E-22 137.1 -0.9 57 100-156 19-76 (81)
21 2epb_A Chromodomain-helicase-D 99.4 2E-13 6.7E-18 107.7 5.9 55 100-156 7-67 (68)
22 1x3p_A Cpsrp43; chromo-2 domai 99.3 1.8E-14 6.1E-19 109.4 -5.3 47 106-156 2-50 (54)
23 2ee1_A Chromodomain helicase-D 99.2 4.9E-12 1.7E-16 99.5 4.2 54 101-154 8-63 (64)
24 3mwy_W Chromo domain-containin 99.2 1.9E-12 6.6E-17 137.6 -0.5 69 88-156 21-110 (800)
25 2b2y_C CHD-1, chromodomain-hel 99.1 8.2E-13 2.8E-17 114.6 -4.9 60 100-160 32-102 (115)
26 2b2y_A CHD-1, chromodomain-hel 98.9 2.6E-10 9E-15 104.9 1.8 52 105-156 131-186 (187)
27 2h1e_A Chromo domain protein 1 98.9 3.2E-10 1.1E-14 103.6 1.5 53 103-155 119-177 (177)
28 2b2y_A CHD-1, chromodomain-hel 98.6 2.5E-09 8.4E-14 98.5 -2.0 59 100-158 32-100 (187)
29 2h1e_A Chromo domain protein 1 98.5 2.5E-08 8.6E-13 91.1 3.1 54 104-157 12-86 (177)
30 3kup_A Chromobox protein homol 98.4 4.8E-08 1.6E-12 76.7 1.5 53 103-156 11-63 (65)
31 2fmm_A Chromobox protein homol 98.4 1.7E-07 5.9E-12 75.1 3.8 53 102-156 13-66 (74)
32 3i3c_A Chromobox protein homol 98.2 1.7E-07 5.7E-12 75.8 -0.1 53 102-156 20-73 (75)
33 3p7j_A Heterochromatin protein 98.2 6.6E-07 2.2E-11 74.4 2.9 55 102-157 23-77 (87)
34 3q6s_A Chromobox protein homol 98.1 3.7E-07 1.3E-11 74.2 0.6 53 103-157 8-61 (78)
35 1e0b_A SWI6 protein; chromatin 96.5 0.001 3.5E-08 52.8 2.0 54 377-438 12-65 (68)
36 3mwy_W Chromo domain-containin 96.4 0.00054 1.9E-08 73.1 -0.1 53 105-157 146-204 (800)
37 1e0b_A SWI6 protein; chromatin 94.9 0.0099 3.4E-07 47.2 2.0 48 106-156 12-61 (68)
38 3ui2_A Signal recognition part 93.9 0.077 2.6E-06 47.4 5.6 48 106-157 188-235 (244)
39 3p7j_A Heterochromatin protein 93.2 0.024 8.1E-07 47.1 1.0 46 391-440 36-82 (87)
40 2lcc_A AT-rich interactive dom 92.7 0.14 4.7E-06 41.1 4.8 40 104-143 23-62 (76)
41 3kup_A Chromobox protein homol 92.2 0.032 1.1E-06 43.5 0.5 43 390-436 22-65 (65)
42 3q6s_A Chromobox protein homol 92.1 0.032 1.1E-06 45.2 0.4 44 391-438 20-64 (78)
43 2ro0_A Histone acetyltransfera 91.5 0.22 7.4E-06 41.5 4.8 40 103-142 36-75 (92)
44 2rnz_A Histone acetyltransfera 91.1 0.27 9.3E-06 41.3 5.0 40 103-142 38-77 (94)
45 3i3c_A Chromobox protein homol 90.4 0.056 1.9E-06 43.6 0.2 42 391-436 33-75 (75)
46 2eko_A Histone acetyltransfera 90.3 0.2 6.9E-06 41.4 3.5 39 104-142 28-66 (87)
47 2fmm_A Chromobox protein homol 90.3 0.039 1.3E-06 44.1 -0.8 44 392-438 27-70 (74)
48 2f5k_A MORF-related gene 15 is 90.2 0.36 1.2E-05 41.0 5.0 40 104-143 36-75 (102)
49 2bud_A Males-absent on the fir 89.2 0.48 1.6E-05 39.8 5.0 41 103-143 28-71 (92)
50 1wgs_A MYST histone acetyltran 87.9 1 3.5E-05 39.4 6.5 41 103-143 26-68 (133)
51 2lrq_A Protein MRG15, NUA4 com 87.3 0.11 3.8E-06 42.5 0.0 36 108-143 30-65 (85)
52 3oa6_A MALE-specific lethal 3 84.7 0.98 3.4E-05 39.0 4.5 40 103-143 38-82 (110)
53 3m9p_A MALE-specific lethal 3 84.1 1.9 6.4E-05 37.2 6.0 40 103-143 38-82 (110)
54 3m9q_A Protein MALE-specific l 84.1 1.3 4.3E-05 37.7 4.9 42 101-143 36-82 (101)
55 2k3y_A Chromatin modification- 52.9 7.4 0.00025 34.6 2.6 23 121-143 78-100 (136)
56 3e9g_A Chromatin modification- 46.9 7.8 0.00027 34.4 1.8 27 117-143 72-98 (130)
57 4ft4_B DNA (cytosine-5)-methyl 25.9 94 0.0032 33.0 6.2 55 102-156 310-368 (784)
58 2av4_A Thioredoxin-like protei 22.6 43 0.0015 30.2 2.4 36 400-436 97-139 (160)
59 2hz5_A Dynein light chain 2A, 22.0 50 0.0017 27.9 2.6 44 375-419 49-97 (106)
No 1
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} SCOP: b.34.13.0 PDB: 3r93_A* 3svm_A* 3qo2_A*
Probab=99.75 E-value=3.8e-19 Score=137.55 Aligned_cols=59 Identities=29% Similarity=0.749 Sum_probs=55.5
Q ss_pred CCceEEEEEEEEeEEeCCeEEEEEEecCCCCCCCceeecCCcCChHHHHHHHHHHhhcC
Q 042818 101 DEGFFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAFEESLRSG 159 (440)
Q Consensus 101 dEeEYEVEkILd~R~~~GkleYLVKWKGY~eseNTWEPeENL~dc~ELIeeFe~k~~~~ 159 (440)
++++|+||+||++|..+|+++|||||+||+..++||||++||.+|+++|.+|+.++...
T Consensus 1 ge~~y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~~~~~li~~f~~~~~~~ 59 (62)
T 3lwe_A 1 GEDVFEVEKILDMKTEGGKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEFRKKIAEN 59 (62)
T ss_dssp CCCSCCEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEEEEEEcCCeEEEEEEEeCCCCcCCCeeeHhHhhccHHHHHHHHHhhHhh
Confidence 46799999999999999999999999999999999999999999999999999998753
No 2
>1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif, alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB: 1guw_A*
Probab=99.74 E-value=2.5e-18 Score=136.95 Aligned_cols=62 Identities=39% Similarity=0.845 Sum_probs=56.2
Q ss_pred CCCCceEEEEEEEEeEEeCCeEEEEEEecCCCCCCCceeecCCcCChHHHHHHHHHHhhcCCC
Q 042818 99 KLDEGFFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAFEESLRSGKS 161 (440)
Q Consensus 99 ~~dEeEYEVEkILd~R~~~GkleYLVKWKGY~eseNTWEPeENL~dc~ELIeeFe~k~~~~K~ 161 (440)
..++++|+||+||++|..+|+++|||||+||+..++||||++|| +|+++|++|+.++...+.
T Consensus 8 ~~~~~ey~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nL-~~~~li~~f~~~~~~~~~ 69 (73)
T 1ap0_A 8 EEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEFLQSQKTAHE 69 (73)
T ss_dssp CSCSSCCEEEEEEEEEECSSSEEEEEEEESSSSCCCEEEETTTC-CCHHHHHHHTTTTTSSTT
T ss_pred cCCCceEEEEEEEEEEEeCCeEEEEEEECCCCCccCcEeeHHHC-CCHHHHHHHHHHhhcccc
Confidence 34567999999999999999999999999999999999999999 799999999988776553
No 3
>2rso_A Chromatin-associated protein SWI6; chromodomain, silencing, chromosomal protein, Met transcription; NMR {Schizosaccharomyces pombe}
Probab=99.74 E-value=1.3e-18 Score=144.55 Aligned_cols=58 Identities=26% Similarity=0.668 Sum_probs=52.4
Q ss_pred CCceEEEEEEEEeEEe--CCeEEEEEEecCCCC-CCCceeecCCcCChHHHHHHHHHHhhc
Q 042818 101 DEGFFEIEAIRRKRVR--KGQLQYLIKWRGWPE-NANTWEPLENLQSCSDVIDAFEESLRS 158 (440)
Q Consensus 101 dEeEYEVEkILd~R~~--~GkleYLVKWKGY~e-seNTWEPeENL~dc~ELIeeFe~k~~~ 158 (440)
.+++|+||+||++|+. +|+++|||||+||++ .++||||++||.+|++||.+|+.+++.
T Consensus 27 ~~eey~VE~Il~~r~~~~~g~~~YlVkWkGy~~~~~~TWEP~~nl~~c~~li~~f~~~~~~ 87 (92)
T 2rso_A 27 EEDEYVVEKVLKHRMARKGGGYEYLLKWEGYDDPSDNTWSSEADCSGCKQLIEAYWNEHGG 87 (92)
T ss_dssp CCCCCCEEEEEEEEECTTSSCEEEEEEETTCCCCTTSEEECGGGGGTSHHHHHHHHHHHTC
T ss_pred cCceEEEEEEEEEEeecCCCEEEEEEEEccCCCcccCccccHHHHhhHHHHHHHHHHHcCC
Confidence 4478999999999984 689999999999995 789999999999999999999998763
No 4
>3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural GENO structural genomics consortium, SGC, centromere, nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens}
Probab=99.73 E-value=2.1e-18 Score=132.21 Aligned_cols=57 Identities=40% Similarity=0.861 Sum_probs=49.7
Q ss_pred ceEEEEEEEEeEEeCCeEEEEEEecCCCCCCCceeecCCcCChHHHHHHHHHHhhcCC
Q 042818 103 GFFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAFEESLRSGK 160 (440)
Q Consensus 103 eEYEVEkILd~R~~~GkleYLVKWKGY~eseNTWEPeENL~dc~ELIeeFe~k~~~~K 160 (440)
++|+||+||++|..+|+++|||||+||+..++||||++|| +|++||.+|+.+++.+|
T Consensus 2 eey~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl-~~~~li~~f~~~~k~~~ 58 (59)
T 3fdt_A 2 EEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNL-DCPELISEFMKKYKKMK 58 (59)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGE-ECHHHHHHHHC------
T ss_pred CeEEEEEEEEEEEeCCeEEEEEEEeCCCcccCCccchhHC-CCHHHHHHHHHhhhhcC
Confidence 6899999999999999999999999999999999999999 89999999998876544
No 5
>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1, structural genomics, struct genomics consortium, SGC, centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A* 2l11_A* 3dm1_A*
Probab=99.72 E-value=3.1e-18 Score=129.49 Aligned_cols=54 Identities=44% Similarity=0.969 Sum_probs=49.2
Q ss_pred ceEEEEEEEEeEEeCCeEEEEEEecCCCCCCCceeecCCcCChHHHHHHHHHHhh
Q 042818 103 GFFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAFEESLR 157 (440)
Q Consensus 103 eEYEVEkILd~R~~~GkleYLVKWKGY~eseNTWEPeENL~dc~ELIeeFe~k~~ 157 (440)
++|+||+||++|..+|+++|||||+||+..++||||++|| +|++||.+|+.+++
T Consensus 1 gey~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl-~~~~li~~f~~~qk 54 (55)
T 3f2u_A 1 GEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEFLQSQK 54 (55)
T ss_dssp CCCCEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGC-CCHHHHHHHHC---
T ss_pred CcEEEEEEEEEEEeCCeEEEEEEEEeCCCccCCeeEHHHC-CCHHHHHHHHHHcc
Confidence 4799999999999999999999999999999999999999 89999999998764
No 6
>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural genomics structural genomics consortium, SGC, chromatin regulator, N phosphoprotein, repressor; HET: M3L; 1.55A {Homo sapiens} SCOP: b.34.13.2 PDB: 3gv6_A* 3i90_A*
Probab=99.72 E-value=6.1e-18 Score=127.23 Aligned_cols=53 Identities=45% Similarity=0.997 Sum_probs=49.5
Q ss_pred CceEEEEEEEEeEEeCCeEEEEEEecCCCCCCCceeecCCcCChHHHHHHHHHH
Q 042818 102 EGFFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAFEES 155 (440)
Q Consensus 102 EeEYEVEkILd~R~~~GkleYLVKWKGY~eseNTWEPeENL~dc~ELIeeFe~k 155 (440)
+++|+||+||++|..+|+++|||||+||+..++||||++||. |++||++|+.+
T Consensus 1 e~~y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~-~~~li~~f~~R 53 (54)
T 3i91_A 1 ERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENIL-DARLLAAFEER 53 (54)
T ss_dssp -CEEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGBC-CHHHHHHHHHC
T ss_pred CCeEEEEEEEEEEEeCCcEEEEEEEeCCCcccCcccchhHCC-CHHHHHHHHhc
Confidence 468999999999999999999999999999999999999995 79999999875
No 7
>2rsn_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, RNA-mediated gene SIL chromosomal protein, methylation; HET: M3L; NMR {Schizosaccharomyces pombe}
Probab=99.72 E-value=6.5e-18 Score=135.70 Aligned_cols=56 Identities=36% Similarity=0.681 Sum_probs=51.9
Q ss_pred CCceEEEEEEEEeEEe-CCeEEEEEEecCCCCCCCceeecCCcCChHHHHHHHHHHh
Q 042818 101 DEGFFEIEAIRRKRVR-KGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAFEESL 156 (440)
Q Consensus 101 dEeEYEVEkILd~R~~-~GkleYLVKWKGY~eseNTWEPeENL~dc~ELIeeFe~k~ 156 (440)
++++|+||+||++|.. +|+++|||||+||+..++||||++||.+|.+||.+|+++.
T Consensus 18 ~~e~yeVE~Il~~r~~~~g~~~YlVkWkGy~~~~~TWEp~~nl~~~~~li~~f~~~~ 74 (75)
T 2rsn_A 18 DADVYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLFGAEKVLKKWKKRK 74 (75)
T ss_dssp GGGCEEEEEEEEEEECSSSCEEEEEEEESSCGGGCEEEEGGGGTTTHHHHHHHHHHC
T ss_pred CCceEEEEEEEEEEEcCCCcEEEEEEECCCCCcCCeeecHHHccChHHHHHHHHHhh
Confidence 4578999999999986 6899999999999999999999999999999999999874
No 8
>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2, structural genomics, structural genomics consortium, SGC, chromatin regulator, D binding, nucleus; HET: M3L; 1.50A {Homo sapiens} SCOP: b.34.13.2 PDB: 2k28_A 3i8z_A
Probab=99.71 E-value=9.3e-18 Score=126.43 Aligned_cols=53 Identities=47% Similarity=0.948 Sum_probs=49.0
Q ss_pred CceEEEEEEEEeEEeCCeEEEEEEecCCCCCCCceeecCCcCChHHHHHHHHHH
Q 042818 102 EGFFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAFEES 155 (440)
Q Consensus 102 EeEYEVEkILd~R~~~GkleYLVKWKGY~eseNTWEPeENL~dc~ELIeeFe~k 155 (440)
+++|+||+||++|..+|+++|||||+||+..++||||++||. |++||.+|+.+
T Consensus 1 e~~y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~-~~~li~~f~~r 53 (54)
T 3h91_A 1 EQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENIL-DPRLLLAFQKK 53 (54)
T ss_dssp CCEEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGBC-SHHHHHHHHC-
T ss_pred CCceEEEEEEEEEEeCCcEEEEEEEeCCCCcCCCeecHhHCC-CHHHHHHHHhc
Confidence 478999999999999999999999999999999999999995 67899999865
No 9
>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin, methyllysine, monomethyllysine, structural protein; HET: MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2 PDB: 1kne_A* 1kna_A*
Probab=99.70 E-value=1.2e-17 Score=132.67 Aligned_cols=56 Identities=46% Similarity=0.964 Sum_probs=50.1
Q ss_pred CCCceEEEEEEEEeEEeCCeEEEEEEecCCCCCCCceeecCCcCChHHHHHHHHHHh
Q 042818 100 LDEGFFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAFEESL 156 (440)
Q Consensus 100 ~dEeEYEVEkILd~R~~~GkleYLVKWKGY~eseNTWEPeENL~dc~ELIeeFe~k~ 156 (440)
.++++|+||+||++|..+|+++|||||+||+..++||||++|| +|++||++|+.+.
T Consensus 12 ~~~~ey~VEkIld~R~~~g~~eYlVKWkGy~~~~~TWEp~enL-~c~~lI~~F~~~~ 67 (69)
T 1q3l_A 12 EEEEEYAVEKIIDRRVRKGMVEYYLKWKGYPETENTWEPENNL-DCQDLIQQYEASR 67 (69)
T ss_dssp ----CEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGE-ECHHHHHHHHHHC
T ss_pred cCCCcEEEEEEEEEEEECCeEEEEEEEcCCCcccCCccchHHC-CCHHHHHHHHHHc
Confidence 4567999999999999999999999999999999999999999 7999999999874
No 10
>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb, chromodomain, peptide binding protein; HET: M3L; 1.40A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=99.69 E-value=1.2e-17 Score=126.05 Aligned_cols=54 Identities=39% Similarity=0.804 Sum_probs=50.0
Q ss_pred CceEEEEEEEEeEEeCCeEEEEEEecCCCCCCCceeecCCcCChHHHHHHHHHHh
Q 042818 102 EGFFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAFEESL 156 (440)
Q Consensus 102 EeEYEVEkILd~R~~~GkleYLVKWKGY~eseNTWEPeENL~dc~ELIeeFe~k~ 156 (440)
+++|+||+||++|..+|+++|||||+||+..++||||++||. |+++|++|+.++
T Consensus 1 d~~y~VE~Il~~r~~~g~~~YlVKWkgy~~~~~TWEp~~~l~-~~~li~~f~~~~ 54 (55)
T 1pfb_A 1 DLVYAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNIL-DRRLIDIYEQTN 54 (55)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGCC-STHHHHHHHTSC
T ss_pred CCEEEEEEEEEEEEeCCeEEEEEEEcCCCCccCcEeEHHHCC-CHHHHHHHHHhc
Confidence 468999999999999999999999999999999999999995 789999998653
No 11
>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=3.8e-17 Score=130.36 Aligned_cols=60 Identities=42% Similarity=0.816 Sum_probs=54.2
Q ss_pred CCCceEEEEEEEEeEEeCCeEEEEEEecCCCCCCCceeecCCcCChHHHHHHHHHHhhcCC
Q 042818 100 LDEGFFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAFEESLRSGK 160 (440)
Q Consensus 100 ~dEeEYEVEkILd~R~~~GkleYLVKWKGY~eseNTWEPeENL~dc~ELIeeFe~k~~~~K 160 (440)
.++++|+||+||++|..+|+++|||||+||+..++||||++||. |+++|++|+.+.....
T Consensus 6 ~~~~ey~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nl~-~~~li~~f~~~~~~k~ 65 (74)
T 2d9u_A 6 SGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENIL-DPRLLLAFQKKEHEKE 65 (74)
T ss_dssp CCCCCCCEEEEEEEEEETTEEEEEEEETTSCTTTCEEEEGGGCC-CHHHHHHHHHHHHHHC
T ss_pred CCCccEEEEEEEEEEEeCCcEEEEEEECCCCCccCccccHHHCC-CHHHHHHHHHhhhhhH
Confidence 45679999999999999999999999999999999999999996 4689999999887544
No 12
>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2
Probab=99.69 E-value=1.5e-17 Score=133.68 Aligned_cols=60 Identities=33% Similarity=0.790 Sum_probs=54.8
Q ss_pred CCCCceEEEEEEEEeEE-eCCeEEEEEEecCCCCCCCceeecCCcCChHHHHHHHHHHhhc
Q 042818 99 KLDEGFFEIEAIRRKRV-RKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAFEESLRS 158 (440)
Q Consensus 99 ~~dEeEYEVEkILd~R~-~~GkleYLVKWKGY~eseNTWEPeENL~dc~ELIeeFe~k~~~ 158 (440)
..++++|+||+||++|. .+|+++|||||+||+..++||||+++|.+|+++|++|+.++..
T Consensus 8 ~~~~~~y~VE~Il~~r~~~~g~~~YlVKWkGy~~~~~TWEp~~~l~~~~~li~~f~~~~~~ 68 (78)
T 2dnt_A 8 MASEELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHTE 68 (78)
T ss_dssp SCSSCSCCCCCEEEEEECTTSCEEEEECBTTBCGGGCEEEETTTCTTCHHHHHHHHHHHSC
T ss_pred cCCCceEEEEEEEEEEEcCCCcEEEEEEECCCCccCCceecHHHHHhHHHHHHHHHhhhhc
Confidence 44568899999999998 4799999999999999999999999999999999999998764
No 13
>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2
Probab=99.69 E-value=9e-18 Score=130.55 Aligned_cols=58 Identities=41% Similarity=0.903 Sum_probs=51.9
Q ss_pred CCCceEEEEEEEEeEEeCCeEEEEEEecCCCCCCCceeecCCcCChHHHHHHHHHHhhc
Q 042818 100 LDEGFFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAFEESLRS 158 (440)
Q Consensus 100 ~dEeEYEVEkILd~R~~~GkleYLVKWKGY~eseNTWEPeENL~dc~ELIeeFe~k~~~ 158 (440)
.++++|+||+||++|..+|+++|||||+||+..++||||++||.. ++||++|+.++.+
T Consensus 6 ~~~~ey~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~~l~~-~~li~~f~~~~~s 63 (64)
T 2dnv_A 6 SGERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILD-ARLLAAFESGPSS 63 (64)
T ss_dssp SSCCCCCCCCEEEEEESSSSEEEEECCSSCCCSSCCEEETTTCCC-HHHHHHHHCCTTC
T ss_pred CCCceEEEEEEEEEEEeCCcEEEEEEECCCCcccCCccCHhHCCC-HHHHHHHHHHccC
Confidence 345789999999999999999999999999999999999999965 5899999976543
No 14
>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus}
Probab=99.69 E-value=2.7e-17 Score=131.13 Aligned_cols=62 Identities=44% Similarity=0.905 Sum_probs=55.8
Q ss_pred CCCCCCCceEEEEEEEEeEEeCCeEEEEEEecCCCCCCCceeecCCcCChHHHHHHHHHHhhc
Q 042818 96 ERPKLDEGFFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAFEESLRS 158 (440)
Q Consensus 96 ~~p~~dEeEYEVEkILd~R~~~GkleYLVKWKGY~eseNTWEPeENL~dc~ELIeeFe~k~~~ 158 (440)
+....++++|+||+||++|..+|+++|||||+||+..++||||++||. |+++|++|+.+..+
T Consensus 5 ~l~~~~~~~y~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~~L~-~~~li~~f~~~~~~ 66 (74)
T 2kvm_A 5 ELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHIL-DPRLVMAYEEKEER 66 (74)
T ss_dssp CSSSCCCCCCCEEEEEEEEEETTEEEEEEEETTSCGGGCEEEETTTCS-CHHHHHHHHHHHHH
T ss_pred ccccCCCccEEEEEEEEEEEeCCcEEEEEEEcCCCCccCeEeeHHHCC-CHHHHHHHHHHhhh
Confidence 345567789999999999999999999999999999999999999995 67999999998754
No 15
>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine methylation, trimethyllysine, cation-PI, chromo, structural protein; HET: M3L; 1.76A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=99.68 E-value=1.7e-17 Score=133.01 Aligned_cols=59 Identities=36% Similarity=0.701 Sum_probs=49.1
Q ss_pred CCCCCCceEEEEEEEEeEEeCCeEEEEEEecCCCCCCCceeecCCcCChHHHHHHHHHHh
Q 042818 97 RPKLDEGFFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAFEESL 156 (440)
Q Consensus 97 ~p~~dEeEYEVEkILd~R~~~GkleYLVKWKGY~eseNTWEPeENL~dc~ELIeeFe~k~ 156 (440)
.+..++++|+||+||++|..+|+++|||||+||+..++||||++|| .|++||++|+.++
T Consensus 13 ~~~~~~~eyeVEkIld~r~~~g~~~YlVKWkGy~~~~nTWEP~enL-~~~~lI~~F~~~~ 71 (72)
T 1pdq_A 13 TDDPVDLVYAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNI-LDRRLIDIYEQTN 71 (72)
T ss_dssp -----CEEEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGC-CSTHHHHHHC---
T ss_pred CCCCCCceEEEEEEEEEEEeCCcEEEEEEECCCCCccCeecchHHC-CCHHHHHHHHHhc
Confidence 3445678999999999999999999999999999999999999999 5899999998763
No 16
>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, silencing, cell cycle, chromosome partition, DNA-binding, nucleus; HET: M3L; 2.20A {Schizosaccharomyces pombe}
Probab=99.68 E-value=1.8e-17 Score=127.88 Aligned_cols=55 Identities=35% Similarity=0.581 Sum_probs=49.9
Q ss_pred CCceEEEEEEEEeEEeCCeE-EEEEEecCCCCCCCceeecCCcCChHHHHHHHHHHh
Q 042818 101 DEGFFEIEAIRRKRVRKGQL-QYLIKWRGWPENANTWEPLENLQSCSDVIDAFEESL 156 (440)
Q Consensus 101 dEeEYEVEkILd~R~~~Gkl-eYLVKWKGY~eseNTWEPeENL~dc~ELIeeFe~k~ 156 (440)
++++|+||+||++|..+|++ +|||||+||+..++||||++|| .|+++|.+|+.+.
T Consensus 4 ~~~ey~VE~Il~~r~~~g~~~~YlVkWkGy~~~~~TWEp~~nl-~~~~li~~~~~~r 59 (61)
T 3g7l_A 4 DADVYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNL-FGAEKVLKKWKKR 59 (61)
T ss_dssp -CCEEEEEEEEEEEECTTSCEEEEEEETTSCGGGCEEEEGGGG-TBCHHHHHHHHHC
T ss_pred CCcEEEEEEEEEEEEECCCEEEEEEEEeCCCCcCCceeeHhHC-CCHHHHHHHHHHh
Confidence 45799999999999998887 9999999999999999999999 5888999998774
No 17
>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=99.68 E-value=5.7e-18 Score=133.54 Aligned_cols=59 Identities=31% Similarity=0.717 Sum_probs=54.6
Q ss_pred CCCceEEEEEEEEeEEeC-CeEE-EEEEecCCCCCCCceeecCCcCChHHHHHHHHHHhhc
Q 042818 100 LDEGFFEIEAIRRKRVRK-GQLQ-YLIKWRGWPENANTWEPLENLQSCSDVIDAFEESLRS 158 (440)
Q Consensus 100 ~dEeEYEVEkILd~R~~~-Gkle-YLVKWKGY~eseNTWEPeENL~dc~ELIeeFe~k~~~ 158 (440)
.++++|+||+||++|..+ |+++ |||||+||+..++||||++||.+|++||++|+.+.+.
T Consensus 4 ~~~~ey~VE~Il~~r~~~~g~~~~YlVKWkGy~~~~~TWEp~enL~~~~~li~~f~~~~~~ 64 (70)
T 1g6z_A 4 PKQEEYEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENLSGCSAVLAEWKRRKRR 64 (70)
T ss_dssp CSSCSSCCCSCSEEECCTTSSCCEEEECCTTTTSSCCEEECGGGGSSCHHHHHHHHHHHTT
T ss_pred CCCceEEEEEEEEEEEcCCCcEEEEEEEECCCCCCCCceecHHHHhhhHHHHHHHHHhccc
Confidence 456789999999999998 9998 9999999999999999999999999999999998664
No 18
>2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin regulator, nucleus, repressor, transcription, transcription regulation; NMR {Homo sapiens} PDB: 2l12_A* 2l1b_A*
Probab=99.68 E-value=1.2e-17 Score=133.95 Aligned_cols=60 Identities=43% Similarity=0.860 Sum_probs=50.7
Q ss_pred CCCCCCCceEEEEEEEEeEEeCCeEEEEEEecCCCCCCCceeecCCcCChHHHHHHHHHHh
Q 042818 96 ERPKLDEGFFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAFEESL 156 (440)
Q Consensus 96 ~~p~~dEeEYEVEkILd~R~~~GkleYLVKWKGY~eseNTWEPeENL~dc~ELIeeFe~k~ 156 (440)
+....++++|+||+||++|..+|+++|||||+||+..++||||++||. |++||++|+.++
T Consensus 13 ~~~~~~~~eyeVEkIld~r~~~g~~~YlVKWkGy~~~~~TWEp~enL~-~~~li~~F~~~~ 72 (73)
T 2k1b_A 13 NLYFQGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHIL-DPRLVMAYEEKE 72 (73)
T ss_dssp ------CCCCCCSEEEEEEEETTEEEEEEECTTCCGGGCCEEETTSCS-CHHHHHHHHTSC
T ss_pred CcccCCCceEEEEEEEEEEEcCCcEEEEEEECCCCcccCeecchHHCC-CHHHHHHHHHhc
Confidence 344556789999999999999999999999999999999999999995 789999998753
No 19
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}
Probab=99.67 E-value=8.6e-18 Score=131.39 Aligned_cols=57 Identities=35% Similarity=0.756 Sum_probs=52.3
Q ss_pred EEEEEEEeEEeCCeEEEEEEecCCCCCCCceeecCCcCChHHHHHHHHHHhhcCCCCC
Q 042818 106 EIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAFEESLRSGKSSR 163 (440)
Q Consensus 106 EVEkILd~R~~~GkleYLVKWKGY~eseNTWEPeENL~dc~ELIeeFe~k~~~~K~sr 163 (440)
|||+||++|..+|+++|||||+||+..++||||++|| .|++||.+|+.++.+....+
T Consensus 2 EVE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nl-~c~~li~~f~~~~~~~l~~~ 58 (64)
T 3mts_A 2 EVEYLCDYKKIREQEYYLVKWRGYPDSESTWEPRQNL-KCVRILKQFHKDLERELLRR 58 (64)
T ss_dssp CEEEEEEEEECSSCEEEEEEETTSCGGGCEEEEGGGC-CCHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEEeCCeEEEEEEEecCCCcCCcEeEHHHC-CCHHHHHHHHHHHHHHHHhc
Confidence 6999999999999999999999999999999999999 59999999999998655433
No 20
>4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens}
Probab=99.65 E-value=7.8e-18 Score=137.12 Aligned_cols=57 Identities=37% Similarity=0.810 Sum_probs=51.7
Q ss_pred CCCceEEEEEEEEeEEe-CCeEEEEEEecCCCCCCCceeecCCcCChHHHHHHHHHHh
Q 042818 100 LDEGFFEIEAIRRKRVR-KGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAFEESL 156 (440)
Q Consensus 100 ~dEeEYEVEkILd~R~~-~GkleYLVKWKGY~eseNTWEPeENL~dc~ELIeeFe~k~ 156 (440)
...++|+||+||++|.. +|+++|||||+||+..++||||++||.+|++||.+|+.+.
T Consensus 19 ~~~e~yeVE~Ild~R~~~~g~~~YlVKWkGy~~~~~TWEp~~nl~~~~~li~~f~~~~ 76 (81)
T 4hae_A 19 ASGDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNGLH 76 (81)
T ss_dssp TTSCEEEEEEEEEEEECTTSCEEEEEEETTCCGGGCEEEEGGGEEECCCCCCTTCSSC
T ss_pred CCCCEEEEEEEEEeEECCCCeEEEEEEECCCCCCCCeEEeHHHhhhhHHHHHHHHHHc
Confidence 34579999999999985 7899999999999999999999999999999999998654
No 21
>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=2e-13 Score=107.74 Aligned_cols=55 Identities=25% Similarity=0.482 Sum_probs=48.0
Q ss_pred CCCceEEEEEEEEeEEe----CC--eEEEEEEecCCCCCCCceeecCCcCChHHHHHHHHHHh
Q 042818 100 LDEGFFEIEAIRRKRVR----KG--QLQYLIKWRGWPENANTWEPLENLQSCSDVIDAFEESL 156 (440)
Q Consensus 100 ~dEeEYEVEkILd~R~~----~G--kleYLVKWKGY~eseNTWEPeENL~dc~ELIeeFe~k~ 156 (440)
...+.|+||+||++|.. .| +++|||||+||+..++||||+++| ++++|++|+.+.
T Consensus 7 ~~pe~~~VErIl~~r~~~~~~~g~~~~eYLVKWkgl~y~e~TWE~~~~l--~~~~I~~f~~r~ 67 (68)
T 2epb_A 7 GNPDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELEEDV--DPAKVKEFESLQ 67 (68)
T ss_dssp SCSSCCCCCEEEEEEEEECSSSCCEEEEEEEECTTSCGGGCCEEETTTS--CHHHHHHHHHHC
T ss_pred CCCCceEEeEEEEEEecccccCCCcceEEEEEEcCCChhcCccccchhc--CHHHHHHHHHhh
Confidence 34567899999999974 36 899999999999999999999999 468999999764
No 22
>1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein translocation, unknown function; NMR {Arabidopsis thaliana} SCOP: b.34.13.2
Probab=99.31 E-value=1.8e-14 Score=109.38 Aligned_cols=47 Identities=32% Similarity=0.688 Sum_probs=42.2
Q ss_pred EEEEEEEeEEeC-CeE-EEEEEecCCCCCCCceeecCCcCChHHHHHHHHHHh
Q 042818 106 EIEAIRRKRVRK-GQL-QYLIKWRGWPENANTWEPLENLQSCSDVIDAFEESL 156 (440)
Q Consensus 106 EVEkILd~R~~~-Gkl-eYLVKWKGY~eseNTWEPeENL~dc~ELIeeFe~k~ 156 (440)
+||+||++|..+ |++ +|||||+|| +++||||++||. +++|++|+.++
T Consensus 2 ~VE~Ild~r~~~~g~~~~YlVKWkgy--~~~TWEp~~nL~--~~li~~f~~~~ 50 (54)
T 1x3p_A 2 VAESVIGKRVGDDGKTIEYLVKWTDM--SDATWEPQDNVD--STLVLLYQQQQ 50 (54)
T ss_dssp CSSCCCCBSSCSSSCCCCBCCCCSSS--SSCSCSTTCCSS--SSSHHHHTSSC
T ss_pred eEEEEEEEEEcCCCcEEEEEEEECCC--CcCCccchHHCC--HHHHHHHHHHc
Confidence 689999999987 998 999999999 689999999994 78999998654
No 23
>2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP- dependent helicase CHD4, CHD-4, MI-2 autoantigen 218 kDa protein, MI2-beta; NMR {Homo sapiens}
Probab=99.23 E-value=4.9e-12 Score=99.45 Aligned_cols=54 Identities=28% Similarity=0.580 Sum_probs=46.1
Q ss_pred CCceEEEEEEEEeEEe-CCeEEEEEEecCCCCCCCceeecC-CcCChHHHHHHHHH
Q 042818 101 DEGFFEIEAIRRKRVR-KGQLQYLIKWRGWPENANTWEPLE-NLQSCSDVIDAFEE 154 (440)
Q Consensus 101 dEeEYEVEkILd~R~~-~GkleYLVKWKGY~eseNTWEPeE-NL~dc~ELIeeFe~ 154 (440)
..+.|.||+||++|.. +|+++|||||+|++..++||||++ .+...++.|++|+.
T Consensus 8 ~pe~~~VeRIi~~r~~~~g~~eYLVKWkgl~y~e~TWE~~~~~~~~~~~~I~~y~~ 63 (64)
T 2ee1_A 8 KPEWMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESEDVEIQDYDLFKQSYWN 63 (64)
T ss_dssp CCSSCCCCCCCEEEECTTCCEEEEECCTTSCTTTCEEEETTCCCTTHHHHHHHHHH
T ss_pred CCCcEEEEEEEEEEecCCCCEEEEEEEcCCCcccCcccCCcccCcchHHHHHHHHh
Confidence 3478899999999995 799999999999999999999998 33355566999985
No 24
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.18 E-value=1.9e-12 Score=137.61 Aligned_cols=69 Identities=25% Similarity=0.494 Sum_probs=46.7
Q ss_pred cCCCCCCCCCCCCCCceEEEEEEEEeEEe-------------------CCeEEEEEEecCCCCCCCceeecCCcCChHH-
Q 042818 88 DEDAVPQEERPKLDEGFFEIEAIRRKRVR-------------------KGQLQYLIKWRGWPENANTWEPLENLQSCSD- 147 (440)
Q Consensus 88 ~~e~~~~e~~p~~dEeEYEVEkILd~R~~-------------------~GkleYLVKWKGY~eseNTWEPeENL~dc~E- 147 (440)
++++.+++......+++|+||+||+||++ +|+++|||||+||+..+|||||+++|..|+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~ve~vl~~r~~~~~~~~~~~~~~~~~~~~~~~~~eylvKWkg~s~~hntWe~~e~L~~~~~~ 100 (800)
T 3mwy_W 21 SEENVHEASANPQPEDFHGIDIVINHRLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGL 100 (800)
T ss_dssp ---------------CCCBCSEEEEEECCCC--------CCSCCHHHHHHHCEEEEECSSSCTTSCEEECHHHHCSCBTT
T ss_pred ccccCccccCCCccCCCCchhhhccccccccccCCccccccCcCcCCCcCceEEEEEeCCcceeeccccCHHHHhhcchH
Confidence 33555556666677899999999999999 8899999999999999999999999965422
Q ss_pred -HHHHHHHHh
Q 042818 148 -VIDAFEESL 156 (440)
Q Consensus 148 -LIeeFe~k~ 156 (440)
.|..|.++.
T Consensus 101 ~~~~~~~k~~ 110 (800)
T 3mwy_W 101 KRLDNYCKQF 110 (800)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 266676665
No 25
>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C
Probab=99.13 E-value=8.2e-13 Score=114.58 Aligned_cols=60 Identities=33% Similarity=0.647 Sum_probs=48.3
Q ss_pred CCCceEEEEEE------EEeEEeCCeEEEEEEecCCCCCCCceeecCCcCChH-----HHHHHHHHHhhcCC
Q 042818 100 LDEGFFEIEAI------RRKRVRKGQLQYLIKWRGWPENANTWEPLENLQSCS-----DVIDAFEESLRSGK 160 (440)
Q Consensus 100 ~dEeEYEVEkI------Ld~R~~~GkleYLVKWKGY~eseNTWEPeENL~dc~-----ELIeeFe~k~~~~K 160 (440)
....+|+||+| |++|..+|+++|||||+||+..+|||||++|| .|+ .+|..|..+.....
T Consensus 32 ~~~~~Y~VE~i~Dp~~ildkR~~~g~~eYlVKWkG~s~~~nTWEp~enL-~~~~~~g~kklenY~kk~~e~~ 102 (115)
T 2b2y_C 32 ATTTIYAVEADGDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETL-KQQNVRGMKKLDNYKKKDQETK 102 (115)
T ss_dssp GGGSHHHHHHHCBTTTTCCTTSSSCEEEEEEEETTSCGGGCEEECHHHH-HHHTCBCTHHHHHHHC------
T ss_pred CCCceEEEeecCCcccccccceeCCcEEEEEEECCCCchhcccCCHHHc-CCccchHHHHHHHHHHHHHHHH
Confidence 34678999996 99999999999999999999999999999999 453 48999998865433
No 26
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Probab=98.90 E-value=2.6e-10 Score=104.91 Aligned_cols=52 Identities=21% Similarity=0.353 Sum_probs=47.3
Q ss_pred EEEEEEEEeEE---eCCeEEEEEEecCCCCCCCceeecCCcC-ChHHHHHHHHHHh
Q 042818 105 FEIEAIRRKRV---RKGQLQYLIKWRGWPENANTWEPLENLQ-SCSDVIDAFEESL 156 (440)
Q Consensus 105 YEVEkILd~R~---~~GkleYLVKWKGY~eseNTWEPeENL~-dc~ELIeeFe~k~ 156 (440)
++||+||++|. ..|.++|||||+|++..++||||+++|. .|+++|++|+.+.
T Consensus 131 ~~VErIi~~r~~~~~~g~~~yLVKWkgl~Y~e~TWE~~~~i~~~~~~~I~~f~~R~ 186 (187)
T 2b2y_A 131 QIVGRIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDEYFSRK 186 (187)
T ss_dssp TSEEEEEEEEEEECTTSCEEEEEEETTSCGGGCEEECHHHHHHHHHHHHHHHHHTT
T ss_pred ceeEEEEEeeeecCCCCcEEEEEEECCCChhhCcccchhhhhhhHHHHHHHHHhhc
Confidence 38999999998 4799999999999999999999999985 6899999999764
No 27
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=98.88 E-value=3.2e-10 Score=103.61 Aligned_cols=53 Identities=28% Similarity=0.519 Sum_probs=47.1
Q ss_pred ceEEEEEEEEeEE-----eCCeEEEEEEecCCCCCCCceeecCCcC-ChHHHHHHHHHH
Q 042818 103 GFFEIEAIRRKRV-----RKGQLQYLIKWRGWPENANTWEPLENLQ-SCSDVIDAFEES 155 (440)
Q Consensus 103 eEYEVEkILd~R~-----~~GkleYLVKWKGY~eseNTWEPeENL~-dc~ELIeeFe~k 155 (440)
+.++||+||++|. ..|.++|||||+|++..++||||+++|. .|+++|++|+.+
T Consensus 119 e~~~VErIi~~r~~~~~~~~~~~~YLVKWkgl~y~e~TWE~~~~~~~~~~~~I~~y~~r 177 (177)
T 2h1e_A 119 EFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQKK 177 (177)
T ss_dssp HTTSEEEEEEEEEEECTTSCEEEEEEEEETTSCSTTCEEEEHHHHHHHCHHHHHHHTC-
T ss_pred ccceeEEEEEEeeecccCCCCcEEEEEEeCCCCcccccccChHHhhhhHHHHHHHHHhC
Confidence 5679999999997 4789999999999999999999999996 489999999753
No 28
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Probab=98.60 E-value=2.5e-09 Score=98.47 Aligned_cols=59 Identities=32% Similarity=0.646 Sum_probs=50.0
Q ss_pred CCCceEEEEEE------EEeEEeCCeEEEEEEecCCCCCCCceeecCCcC----ChHHHHHHHHHHhhc
Q 042818 100 LDEGFFEIEAI------RRKRVRKGQLQYLIKWRGWPENANTWEPLENLQ----SCSDVIDAFEESLRS 158 (440)
Q Consensus 100 ~dEeEYEVEkI------Ld~R~~~GkleYLVKWKGY~eseNTWEPeENL~----dc~ELIeeFe~k~~~ 158 (440)
....+|.||+| |+.|..+|..+|||||+||+..++||+|+++|. .|..+|..|..+...
T Consensus 32 ~~~~~y~VE~i~d~~~~ld~r~~~~~~eYlVKWkg~s~~h~tWe~~~~L~~~~~~~~~kl~nf~kk~~~ 100 (187)
T 2b2y_A 32 ATTTIYAVEADGDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQE 100 (187)
T ss_dssp SSSSHHHHHHHCCTTTTCC-CCSCCEEEEEEEETTSCGGGCEEECHHHHHHTTCBCHHHHHHHHHHHHH
T ss_pred CCceeEEeeccCCcccccCccccCCcEEEEEEECCCCcccCeeCCHHHhCccchhhHHHHHHHHHhhhc
Confidence 35578999998 588888999999999999999999999999994 346789999998764
No 29
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=98.55 E-value=2.5e-08 Score=91.07 Aligned_cols=54 Identities=24% Similarity=0.565 Sum_probs=47.2
Q ss_pred eEEEEEEEEeEEeCC-------------------eEEEEEEecCCCCCCCceeecCCcCChHHH--HHHHHHHhh
Q 042818 104 FFEIEAIRRKRVRKG-------------------QLQYLIKWRGWPENANTWEPLENLQSCSDV--IDAFEESLR 157 (440)
Q Consensus 104 EYEVEkILd~R~~~G-------------------kleYLVKWKGY~eseNTWEPeENL~dc~EL--IeeFe~k~~ 157 (440)
.-.|+.||+||...| ..+|||||+||+..+|||+|+++|..|+.+ |..|.++..
T Consensus 12 ~~~id~v~~hr~~~~~~~~~~~~~~~~~~~~~~~~~EYlVKWKg~Sy~HnTWe~ee~L~~~~glkKl~nf~kk~~ 86 (177)
T 2h1e_A 12 FHGIDIVINHRLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFI 86 (177)
T ss_dssp CCCEEEEEEEEECTTSCGGGGCCSSCCCHHHHHHHEEEEEEETTSCGGGCEEECHHHHCSCTTHHHHHHHHHHHT
T ss_pred CCcceeeecCCccccccccccccccCcccCCCCCceEEEEEECCCccccCeecCHHHHhhchHHHHHHHHHHHhh
Confidence 346999999999753 379999999999999999999999878888 899998865
No 30
>3kup_A Chromobox protein homolog 3; chromo shadow domain, structural genomics consortium, SGC, acetylation, chromatin regulator, nucleus, phosphoprotein; 1.77A {Homo sapiens} SCOP: b.34.13.2 PDB: 1dz1_A
Probab=98.43 E-value=4.8e-08 Score=76.65 Aligned_cols=53 Identities=25% Similarity=0.386 Sum_probs=43.0
Q ss_pred ceEEEEEEEEeEEeCCeEEEEEEecCCCCCCCceeecCCcCChHHHHHHHHHHh
Q 042818 103 GFFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAFEESL 156 (440)
Q Consensus 103 eEYEVEkILd~R~~~GkleYLVKWKGY~eseNTWEPeENL~dc~ELIeeFe~k~ 156 (440)
.-+++|+|++....+|.+.|||||+|++..+..|..+.|+ .||.+|.+|++++
T Consensus 11 rGle~ekI~g~~~~~Gel~fLvKWKg~~~~d~Vpa~e~n~-~~PqlVI~fYE~~ 63 (65)
T 3kup_A 11 RGLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANM-KCPQIVIAFYEER 63 (65)
T ss_dssp GCCCEEEEEEEECTTSSCEEEEEETTCSCCEEEEHHHHHH-HCHHHHHHHHHHH
T ss_pred cCCCeeEEeeEEcCCCcEEEEEEECCCChhheEEHHHHHh-hChHHHHHHHHHh
Confidence 4579999999998899999999999999766333334555 6999999998764
No 31
>2fmm_A Chromobox protein homolog 1; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: b.34.13.2 PDB: 1s4z_A
Probab=98.39 E-value=1.7e-07 Score=75.15 Aligned_cols=53 Identities=26% Similarity=0.426 Sum_probs=47.1
Q ss_pred CceEEEEEEEEeEEeCCeEEEEEEecCCCCCCCceeecCCcC-ChHHHHHHHHHHh
Q 042818 102 EGFFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQ-SCSDVIDAFEESL 156 (440)
Q Consensus 102 EeEYEVEkILd~R~~~GkleYLVKWKGY~eseNTWEPeENL~-dc~ELIeeFe~k~ 156 (440)
+.-|++|+|++.+...|.+.|||||+|++. .+|+|...+. .||.+|.+|++++
T Consensus 13 ~rGl~~ekI~g~~~~~Gel~fLvkWkg~d~--~dlVpa~~a~~k~Pq~VI~FYE~~ 66 (74)
T 2fmm_A 13 ARGLEPERIIGATDSSGELMFLMKWKNSDE--ADLVPAKEANVKCPQVVISFYEER 66 (74)
T ss_dssp GGCCCEEEEEEEEEETTEEEEEEEETTCSC--CEEEEHHHHHHHCHHHHHHHHHTT
T ss_pred cccCCceEEEEEEcCCCcEEEEEEECCCCc--ccEEEHHHHhhhChHHHHHHHHHh
Confidence 346899999999999999999999999986 5799998884 7999999999875
No 32
>3i3c_A Chromobox protein homolog 5; CBX5, chromo shadow domain, structural genomics, structural consortium, SGC, centromere, nucleus, phosphoprotein; 2.48A {Homo sapiens} SCOP: b.34.13.2
Probab=98.21 E-value=1.7e-07 Score=75.84 Aligned_cols=53 Identities=26% Similarity=0.366 Sum_probs=40.3
Q ss_pred CceEEEEEEEEeEEeCCeEEEEEEecCCCCCCCceeecCCcC-ChHHHHHHHHHHh
Q 042818 102 EGFFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQ-SCSDVIDAFEESL 156 (440)
Q Consensus 102 EeEYEVEkILd~R~~~GkleYLVKWKGY~eseNTWEPeENL~-dc~ELIeeFe~k~ 156 (440)
+.-+++|+|++....+|.+.|||||+|++..+ |.|...+. .||.+|.+|++++
T Consensus 20 ~rGle~EkIlg~t~~~Gel~fLVKWKg~~e~d--lVpa~ean~k~PqlVI~FYEer 73 (75)
T 3i3c_A 20 ERGLEPEKIIGATDSCGDLMFLMKWKDTDEAD--LVLAKEANVKCPQIVIAFYEER 73 (75)
T ss_dssp GGCCCEEEEEEEEC---CCEEEEEETTSSCEE--EEEHHHHHHHCHHHHHHHHTC-
T ss_pred ccCCCeeEEeeEEccCCcEEEEEEECCCChhc--eEEHHHHhhhChHHHHHHHHHh
Confidence 34579999999998999999999999998765 77754442 6999999998653
No 33
>3p7j_A Heterochromatin protein 1; chromo shadow domain, gene silenc epigenetics, transcription; 2.30A {Drosophila melanogaster}
Probab=98.18 E-value=6.6e-07 Score=74.39 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=46.5
Q ss_pred CceEEEEEEEEeEEeCCeEEEEEEecCCCCCCCceeecCCcCChHHHHHHHHHHhh
Q 042818 102 EGFFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAFEESLR 157 (440)
Q Consensus 102 EeEYEVEkILd~R~~~GkleYLVKWKGY~eseNTWEPeENL~dc~ELIeeFe~k~~ 157 (440)
+.-+++|+|++.....|.+.|||||+|++..+..|..+.|+ .||.+|.+|+++.-
T Consensus 23 ~RGle~EkIlgat~~~Gel~fLVKWKg~~e~DlVpa~ean~-k~PqlVI~FYEerl 77 (87)
T 3p7j_A 23 DRGLEAEKILGASDNNGRLTFLIQFKGVDQAEMVPSSVANE-KIPRMVIHFYEERL 77 (87)
T ss_dssp TTTCCEEEEEEEEEETTEEEEEEEETTCSSCEEEEHHHHHH-HCHHHHHHHHHHTC
T ss_pred cCCCCceEEeeEEccCCcEEEEEEECCCCccceEeHHHHhh-hChHHHHHHHHHhc
Confidence 35579999999999999999999999999877666666666 69999999987754
No 34
>3q6s_A Chromobox protein homolog 1; incenp, heterochromatin, centromere, cell cycle; 1.93A {Homo sapiens} SCOP: b.34.13.2
Probab=98.14 E-value=3.7e-07 Score=74.18 Aligned_cols=53 Identities=26% Similarity=0.410 Sum_probs=43.9
Q ss_pred ceEEEEEEEEeEEeCCeEEEEEEecCCCCCCCceeecCCcC-ChHHHHHHHHHHhh
Q 042818 103 GFFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQ-SCSDVIDAFEESLR 157 (440)
Q Consensus 103 eEYEVEkILd~R~~~GkleYLVKWKGY~eseNTWEPeENL~-dc~ELIeeFe~k~~ 157 (440)
.-+++|+|++.....|.+.|||||+|++..+ |.|...+. .||.+|.+|++++-
T Consensus 8 rGle~EkI~g~~~~~Gel~fLvKWKg~~~~d--lVpa~ean~k~PqlVI~FYE~~l 61 (78)
T 3q6s_A 8 RGLEPERIIGATDSSGELMFLMKWKNSDEAD--LVPAKEANVKCPQVVISFYEERL 61 (78)
T ss_dssp GCCCEEEEEEEECTTSSCEEEEEETTCSCEE--EEEHHHHHHHSHHHHHHHHHTTE
T ss_pred cCCCceEEeeEEcCCCcEEEEEEECCCChhh--eEeHHHHHhhChHHHHHHHHHhc
Confidence 3478999999998899999999999999755 77754442 69999999988864
No 35
>1e0b_A SWI6 protein; chromatin-binding, chromodomain, shadow, heterochromatin; HET: 1PG; 1.9A {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=96.46 E-value=0.001 Score=52.81 Aligned_cols=54 Identities=19% Similarity=0.308 Sum_probs=39.4
Q ss_pred ceeeeeccccccccccCCceeEEEEEEEEecCCcEEEeeccchhccCCeeehhHHHhhhccC
Q 042818 377 AIVKILKPIDFSASVSDNMQDVVVTFMAVRSDGKEVMVDNKYLKANNPLLLINFYEQHLKYS 438 (440)
Q Consensus 377 ~ItkIiKPv~ysasv~~~vQdV~vTF~A~RSDG~EV~VDnk~LKannPllLInfYEqHLrY~ 438 (440)
.|.+|+=-.+. +++---++|.|+ +|+++.|..+.....-|+++|.|||+||...
T Consensus 12 ~Ve~I~g~~~~----~~g~L~flikwk----~~~~~~Vpa~~a~~kcPq~vI~FYE~~l~~~ 65 (68)
T 1e0b_A 12 LVSSIDTIERK----DDGTLEIYLTWK----NGAISHHPSTITNKKCPQKMLQFYESHLTFR 65 (68)
T ss_dssp TEEEEEEEEEC----TTSCEEEEEEET----TSCEEEEEHHHHHHHSHHHHHHHHHTCC---
T ss_pred heeEEEEEEEC----CCCEEEEEEEEC----CCCccceEHHHhHhhCCHHHHHHHHHheeec
Confidence 56666643332 344445666665 8999999999999999999999999999864
No 36
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.00054 Score=73.15 Aligned_cols=53 Identities=26% Similarity=0.461 Sum_probs=44.0
Q ss_pred EEEEEEEEeEE-----eCCeEEEEEEecCCCCCCCceeecCCcC-ChHHHHHHHHHHhh
Q 042818 105 FEIEAIRRKRV-----RKGQLQYLIKWRGWPENANTWEPLENLQ-SCSDVIDAFEESLR 157 (440)
Q Consensus 105 YEVEkILd~R~-----~~GkleYLVKWKGY~eseNTWEPeENL~-dc~ELIeeFe~k~~ 157 (440)
.+||+|+++|. ..+..+|||||+|.+-.+.|||....+. .+++.|..|..+..
T Consensus 146 ~~veRii~~~~~~~~~~~~~~~yLvKW~~L~y~~~tWe~~~~~~~~~~~~i~~~~~r~~ 204 (800)
T 3mwy_W 146 HVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQNREN 204 (800)
T ss_dssp TCEEEECCCCCEECTTSCEECBCCEEETTSCSTTCBCCBHHHHTTTCHHHHHHHHHTTT
T ss_pred cceeEEEeecccccCCCCCceEEEEEecCCCcccccccchhhhhhhhHHHHHHHHHhhh
Confidence 38999999987 4467899999999999999999997764 35788989987643
No 37
>1e0b_A SWI6 protein; chromatin-binding, chromodomain, shadow, heterochromatin; HET: 1PG; 1.9A {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=94.94 E-value=0.0099 Score=47.17 Aligned_cols=48 Identities=19% Similarity=0.339 Sum_probs=38.4
Q ss_pred EEEEEEEeEE-eCCeEEEEEEecCCCCCCCceeecCCc-CChHHHHHHHHHHh
Q 042818 106 EIEAIRRKRV-RKGQLQYLIKWRGWPENANTWEPLENL-QSCSDVIDAFEESL 156 (440)
Q Consensus 106 EVEkILd~R~-~~GkleYLVKWKGY~eseNTWEPeENL-~dc~ELIeeFe~k~ 156 (440)
.|++|+.... ..|.+.|||+|+|-.. +..|..-. ..||.++.+|++.+
T Consensus 12 ~Ve~I~g~~~~~~g~L~flikwk~~~~---~~Vpa~~a~~kcPq~vI~FYE~~ 61 (68)
T 1e0b_A 12 LVSSIDTIERKDDGTLEIYLTWKNGAI---SHHPSTITNKKCPQKMLQFYESH 61 (68)
T ss_dssp TEEEEEEEEECTTSCEEEEEEETTSCE---EEEEHHHHHHHSHHHHHHHHHTC
T ss_pred heeEEEEEEECCCCEEEEEEEECCCCc---cceEHHHhHhhCCHHHHHHHHHh
Confidence 5888888887 7899999999998764 34777554 26999999998864
No 38
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=93.85 E-value=0.077 Score=47.40 Aligned_cols=48 Identities=25% Similarity=0.558 Sum_probs=39.7
Q ss_pred EEEEEEEeEEeCCeEEEEEEecCCCCCCCceeecCCcCChHHHHHHHHHHhh
Q 042818 106 EIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAFEESLR 157 (440)
Q Consensus 106 EVEkILd~R~~~GkleYLVKWKGY~eseNTWEPeENL~dc~ELIeeFe~k~~ 157 (440)
.+..++..|...+..+||++|..+. +++|.|..++. ++++++|+..+.
T Consensus 188 ~~~~~~~~~~~~~~~e~l~~~~~~~--~~~w~~~~~i~--~~li~~y~~~~~ 235 (244)
T 3ui2_A 188 EVDEIVEKRGKGKDVEYLVRWKDGG--DCEWVKGVHVA--EDVAKDYEDGLE 235 (244)
T ss_dssp EEEEEEEEESCTTSCEEEEEESSSS--CEEEEESTTBC--HHHHHHHHHHHC
T ss_pred cHHHHHHHhccCcchhhhhhhcCCC--CCCcCcchhcC--HHHHHHHHHHHH
Confidence 4677888888888899999997665 67999999994 679999988765
No 39
>3p7j_A Heterochromatin protein 1; chromo shadow domain, gene silenc epigenetics, transcription; 2.30A {Drosophila melanogaster}
Probab=93.21 E-value=0.024 Score=47.14 Aligned_cols=46 Identities=20% Similarity=0.408 Sum_probs=32.1
Q ss_pred ccCCceeEEEEEEEEecCCcEE-EeeccchhccCCeeehhHHHhhhccCCC
Q 042818 391 VSDNMQDVVVTFMAVRSDGKEV-MVDNKYLKANNPLLLINFYEQHLKYSTQ 440 (440)
Q Consensus 391 v~~~vQdV~vTF~A~RSDG~EV-~VDnk~LKannPllLInfYEqHLrY~p~ 440 (440)
-+++-.-.+|.|+ +..++ +|=-+.+...-|.|+|.|||.||.+.|+
T Consensus 36 ~~~Gel~fLVKWK----g~~e~DlVpa~ean~k~PqlVI~FYEerl~w~~~ 82 (87)
T 3p7j_A 36 DNNGRLTFLIQFK----GVDQAEMVPSSVANEKIPRMVIHFYEERLSWYSD 82 (87)
T ss_dssp EETTEEEEEEEET----TCSSCEEEEHHHHHHHCHHHHHHHHHHTCC----
T ss_pred ccCCcEEEEEEEC----CCCccceEeHHHHhhhChHHHHHHHHHhcccCcc
Confidence 3455555666664 23343 8899999999999999999999998764
No 40
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=92.70 E-value=0.14 Score=41.13 Aligned_cols=40 Identities=18% Similarity=0.522 Sum_probs=33.9
Q ss_pred eEEEEEEEEeEEeCCeEEEEEEecCCCCCCCceeecCCcC
Q 042818 104 FFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQ 143 (440)
Q Consensus 104 EYEVEkILd~R~~~GkleYLVKWKGY~eseNTWEPeENL~ 143 (440)
.+---+||..+...|..+|+|.+.||....+.|.|++.|.
T Consensus 23 ~~y~AkIl~i~~~~~~~~Y~VHY~gwnkr~DEWV~~~ri~ 62 (76)
T 2lcc_A 23 KIYEASIKSTEIDDGEVLYLVHYYGWNVRYDEWVKADRII 62 (76)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEETTSCCSSCEEEEGGGEE
T ss_pred CEEEEEEEEEEccCCceEEEEEeCCcCCCceEecChhhcc
Confidence 3334567888888899999999999999999999998873
No 41
>3kup_A Chromobox protein homolog 3; chromo shadow domain, structural genomics consortium, SGC, acetylation, chromatin regulator, nucleus, phosphoprotein; 1.77A {Homo sapiens} SCOP: b.34.13.2 PDB: 1dz1_A
Probab=92.20 E-value=0.032 Score=43.52 Aligned_cols=43 Identities=23% Similarity=0.347 Sum_probs=32.1
Q ss_pred cccCCceeEEEEEEEEecCCcEE-EeeccchhccCCeeehhHHHhhhc
Q 042818 390 SVSDNMQDVVVTFMAVRSDGKEV-MVDNKYLKANNPLLLINFYEQHLK 436 (440)
Q Consensus 390 sv~~~vQdV~vTF~A~RSDG~EV-~VDnk~LKannPllLInfYEqHLr 436 (440)
+-.++-.-.+|.|+- ..++ +|=-+.++..-|.|+|.|||.||.
T Consensus 22 ~~~~Gel~fLvKWKg----~~~~d~Vpa~e~n~~~PqlVI~fYE~~l~ 65 (65)
T 3kup_A 22 TDSSGELMFLMKWKD----SDEADLVLAKEANMKCPQIVIAFYEERLT 65 (65)
T ss_dssp ECTTSSCEEEEEETT----CSCCEEEEHHHHHHHCHHHHHHHHHHHC-
T ss_pred EcCCCcEEEEEEECC----CChhheEEHHHHHhhChHHHHHHHHHhcC
Confidence 345555667777753 2233 899999999999999999999983
No 42
>3q6s_A Chromobox protein homolog 1; incenp, heterochromatin, centromere, cell cycle; 1.93A {Homo sapiens} SCOP: b.34.13.2
Probab=92.11 E-value=0.032 Score=45.22 Aligned_cols=44 Identities=23% Similarity=0.409 Sum_probs=33.5
Q ss_pred ccCCceeEEEEEEEEecCCcEE-EeeccchhccCCeeehhHHHhhhccC
Q 042818 391 VSDNMQDVVVTFMAVRSDGKEV-MVDNKYLKANNPLLLINFYEQHLKYS 438 (440)
Q Consensus 391 v~~~vQdV~vTF~A~RSDG~EV-~VDnk~LKannPllLInfYEqHLrY~ 438 (440)
-+++-.-.+|.|+ +..++ +|=-+.++..-|+|+|.|||.||.+.
T Consensus 20 ~~~Gel~fLvKWK----g~~~~dlVpa~ean~k~PqlVI~FYE~~l~~~ 64 (78)
T 3q6s_A 20 DSSGELMFLMKWK----NSDEADLVPAKEANVKCPQVVISFYEERLTWH 64 (78)
T ss_dssp CTTSSCEEEEEET----TCSCEEEEEHHHHHHHSHHHHHHHHHTTEEEE
T ss_pred cCCCcEEEEEEEC----CCChhheEeHHHHHhhChHHHHHHHHHhcccc
Confidence 3455555666664 33344 89999999999999999999999875
No 43
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=91.48 E-value=0.22 Score=41.53 Aligned_cols=40 Identities=10% Similarity=0.299 Sum_probs=35.0
Q ss_pred ceEEEEEEEEeEEeCCeEEEEEEecCCCCCCCceeecCCc
Q 042818 103 GFFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENL 142 (440)
Q Consensus 103 eEYEVEkILd~R~~~GkleYLVKWKGY~eseNTWEPeENL 142 (440)
..|---+||..|...|..+|+|.|.||...-+.|.+.+.|
T Consensus 36 ~~~y~AkIl~ir~~~~~~~YyVHY~g~NkRlDEWV~~~rl 75 (92)
T 2ro0_A 36 DEERLAEILSINTRKAPPKFYVHYVNYNKRLDEWITTDRI 75 (92)
T ss_dssp TEEEEEEEEEEECSSSSCEEEEEETTSCTTSCEEEEGGGE
T ss_pred CEEEEEEEEEEEEcCCCcEEEEEeCCcCcccccccCHhHc
Confidence 3444567888888889999999999999999999999988
No 44
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=91.14 E-value=0.27 Score=41.29 Aligned_cols=40 Identities=10% Similarity=0.299 Sum_probs=34.9
Q ss_pred ceEEEEEEEEeEEeCCeEEEEEEecCCCCCCCceeecCCc
Q 042818 103 GFFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENL 142 (440)
Q Consensus 103 eEYEVEkILd~R~~~GkleYLVKWKGY~eseNTWEPeENL 142 (440)
..|---+||..|...|..+|+|.|.||...-+.|.|.+.|
T Consensus 38 ~~~yeAeIl~ir~~~g~~~YYVHY~g~NkRlDEWV~~~RI 77 (94)
T 2rnz_A 38 DEERLAEILSINTRKAPPKFYVHYVNYNKRLDEWITTDRI 77 (94)
T ss_dssp SCEEEEEEEEEECSSSSCEEEEECTTSCSTTCEEEETTTB
T ss_pred CEEEEEEEEEEEEcCCCcEEEEEeCCcCcccccccCHHHc
Confidence 3444457888888889999999999999999999999999
No 45
>3i3c_A Chromobox protein homolog 5; CBX5, chromo shadow domain, structural genomics, structural consortium, SGC, centromere, nucleus, phosphoprotein; 2.48A {Homo sapiens} SCOP: b.34.13.2
Probab=90.37 E-value=0.056 Score=43.57 Aligned_cols=42 Identities=24% Similarity=0.301 Sum_probs=28.1
Q ss_pred ccCCceeEEEEEEEEecCCcEE-EeeccchhccCCeeehhHHHhhhc
Q 042818 391 VSDNMQDVVVTFMAVRSDGKEV-MVDNKYLKANNPLLLINFYEQHLK 436 (440)
Q Consensus 391 v~~~vQdV~vTF~A~RSDG~EV-~VDnk~LKannPllLInfYEqHLr 436 (440)
-.++-.-.+|.|+- ..++ +|--+.++..-|.|+|.|||.||.
T Consensus 33 ~~~Gel~fLVKWKg----~~e~dlVpa~ean~k~PqlVI~FYEerlt 75 (75)
T 3i3c_A 33 DSCGDLMFLMKWKD----TDEADLVLAKEANVKCPQIVIAFYEERLT 75 (75)
T ss_dssp C---CCEEEEEETT----SSCEEEEEHHHHHHHCHHHHHHHHTC---
T ss_pred ccCCcEEEEEEECC----CChhceEEHHHHhhhChHHHHHHHHHhcC
Confidence 34555566777742 3333 899999999999999999999983
No 46
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.28 E-value=0.2 Score=41.35 Aligned_cols=39 Identities=13% Similarity=0.319 Sum_probs=33.7
Q ss_pred eEEEEEEEEeEEeCCeEEEEEEecCCCCCCCceeecCCc
Q 042818 104 FFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENL 142 (440)
Q Consensus 104 EYEVEkILd~R~~~GkleYLVKWKGY~eseNTWEPeENL 142 (440)
.|---+||..+...+..+|+|.|.||...-+.|.+.+.|
T Consensus 28 ~~y~AkIl~i~~~~~~~~YyVHY~g~NkRlDEWV~~~rl 66 (87)
T 2eko_A 28 EWPLAEILSVKDISGRKLFYVHYIDFNRRLDEWVTHERL 66 (87)
T ss_dssp ECCEEEEEEECCSSSCCCEEEEECSSCSCCCEEECTTTB
T ss_pred eEEEEEEEEEEEcCCCcEEEEEeCCCCcccccccCHhHc
Confidence 444456888887788999999999999999999999999
No 47
>2fmm_A Chromobox protein homolog 1; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: b.34.13.2 PDB: 1s4z_A
Probab=90.26 E-value=0.039 Score=44.07 Aligned_cols=44 Identities=20% Similarity=0.354 Sum_probs=33.5
Q ss_pred cCCceeEEEEEEEEecCCcEEEeeccchhccCCeeehhHHHhhhccC
Q 042818 392 SDNMQDVVVTFMAVRSDGKEVMVDNKYLKANNPLLLINFYEQHLKYS 438 (440)
Q Consensus 392 ~~~vQdV~vTF~A~RSDG~EV~VDnk~LKannPllLInfYEqHLrY~ 438 (440)
.++-.-.+|.|+-.. .-=+|--+.++.+-|.|+|.|||.||.+.
T Consensus 27 ~~Gel~fLvkWkg~d---~~dlVpa~~a~~k~Pq~VI~FYE~~l~~~ 70 (74)
T 2fmm_A 27 SSGELMFLMKWKNSD---EADLVPAKEANVKCPQVVISFYEERLTWH 70 (74)
T ss_dssp ETTEEEEEEEETTCS---CCEEEEHHHHHHHCHHHHHHHHHTTEEES
T ss_pred CCCcEEEEEEECCCC---cccEEEHHHHhhhChHHHHHHHHHhceec
Confidence 455566777775322 12389999999999999999999999864
No 48
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=90.17 E-value=0.36 Score=41.02 Aligned_cols=40 Identities=20% Similarity=0.552 Sum_probs=34.2
Q ss_pred eEEEEEEEEeEEeCCeEEEEEEecCCCCCCCceeecCCcC
Q 042818 104 FFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQ 143 (440)
Q Consensus 104 EYEVEkILd~R~~~GkleYLVKWKGY~eseNTWEPeENL~ 143 (440)
.+---+||..+...|..+|+|.+.||....+.|.|++.|.
T Consensus 36 ~~YeAkIl~v~~~~~~~~Y~VHY~GwNkR~DEWV~~~Rl~ 75 (102)
T 2f5k_A 36 LLYEAKCVKVAIKDKQVKYFIHYSGWNKNWDEWVPESRVL 75 (102)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGEE
T ss_pred EEEEEEEEEEEEcCCCcEEEEEeCCcCCCceeeccHhhcc
Confidence 3334568888888899999999999999999999998885
No 49
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=89.22 E-value=0.48 Score=39.80 Aligned_cols=41 Identities=12% Similarity=0.319 Sum_probs=33.7
Q ss_pred ceEEEEEEEEeEEeC---CeEEEEEEecCCCCCCCceeecCCcC
Q 042818 103 GFFEIEAIRRKRVRK---GQLQYLIKWRGWPENANTWEPLENLQ 143 (440)
Q Consensus 103 eEYEVEkILd~R~~~---GkleYLVKWKGY~eseNTWEPeENL~ 143 (440)
..|---+||..|... +..+|+|.|.||...-+.|.+.+.|.
T Consensus 28 g~~yeAeIl~ir~~~~~~~~~~YYVHY~g~NkRlDEWV~~~RL~ 71 (92)
T 2bud_A 28 GTVHRGQVLQSRTTENAAAPDEYYVHYVGLNRRLDGWVGRHRIS 71 (92)
T ss_dssp SCEEEEEEEEEECTTTCSSCCEEEEECSSSCTTTCEEEETTTEE
T ss_pred CCEEEEEEEEEeeccCCCCCcEEEEEeCCcccccccccCHHHhc
Confidence 344445678877764 67899999999999999999999995
No 50
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=87.94 E-value=1 Score=39.44 Aligned_cols=41 Identities=15% Similarity=0.453 Sum_probs=34.0
Q ss_pred ceEEEEEEEEeEEe--CCeEEEEEEecCCCCCCCceeecCCcC
Q 042818 103 GFFEIEAIRRKRVR--KGQLQYLIKWRGWPENANTWEPLENLQ 143 (440)
Q Consensus 103 eEYEVEkILd~R~~--~GkleYLVKWKGY~eseNTWEPeENL~ 143 (440)
..|---+||..+.. .|..+|+|.|.||....+-|.|.+.|.
T Consensus 26 ~~~y~AkIl~i~~~~~~~~~~YyVHY~gwNkR~DEWV~~~ri~ 68 (133)
T 1wgs_A 26 STWHSAEVIQSRVNDQEGREEFYVHYVGFNRRLDEWVDKNRLA 68 (133)
T ss_dssp TEEEEEEEEEEEEETTTTEEEEEEECTTTCSSCCEEECTTTSC
T ss_pred CCEEEEEEEEEEeccCCCceEEEEeccCcCCCceeecChhhcc
Confidence 34445678887764 588999999999999999999999993
No 51
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=87.28 E-value=0.11 Score=42.55 Aligned_cols=36 Identities=19% Similarity=0.601 Sum_probs=31.4
Q ss_pred EEEEEeEEeCCeEEEEEEecCCCCCCCceeecCCcC
Q 042818 108 EAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQ 143 (440)
Q Consensus 108 EkILd~R~~~GkleYLVKWKGY~eseNTWEPeENL~ 143 (440)
-+||..+..+|..+|+|.+.||....+-|.|++.|.
T Consensus 30 AkIl~i~~~~~~~~YyVHY~GwNkR~DEWV~~~Rl~ 65 (85)
T 2lrq_A 30 AKVLKTKPDATPVEYYIHYAGWSKNWDEWVPENRVL 65 (85)
Confidence 457777777788999999999999999999998874
No 52
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*
Probab=84.71 E-value=0.98 Score=38.96 Aligned_cols=40 Identities=25% Similarity=0.570 Sum_probs=31.1
Q ss_pred ceEEEEEEEEeEEeC---C--eEEEEEEecCCCCCCCceeecCCcC
Q 042818 103 GFFEIEAIRRKRVRK---G--QLQYLIKWRGWPENANTWEPLENLQ 143 (440)
Q Consensus 103 eEYEVEkILd~R~~~---G--kleYLVKWKGY~eseNTWEPeENL~ 143 (440)
-.|+. +||+.+... + ..+|+|...||....+.|.|++.|.
T Consensus 38 llYeA-KIl~v~~~~~~~~~~~~~Y~VHY~GWn~~WDEWV~~drll 82 (110)
T 3oa6_A 38 VLYDA-KIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVL 82 (110)
T ss_dssp CEEEE-EEEEEEEEECTTCCEEEEEEEEETTSCGGGCEEEEGGGEE
T ss_pred ccEEE-EEEEEEeccCCcCCcccEEEEEECCcCcchhhccChhhhh
Confidence 35654 677766542 2 3689999999999999999999885
No 53
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=84.08 E-value=1.9 Score=37.23 Aligned_cols=40 Identities=25% Similarity=0.576 Sum_probs=32.4
Q ss_pred ceEEEEEEEEeEEeC---C--eEEEEEEecCCCCCCCceeecCCcC
Q 042818 103 GFFEIEAIRRKRVRK---G--QLQYLIKWRGWPENANTWEPLENLQ 143 (440)
Q Consensus 103 eEYEVEkILd~R~~~---G--kleYLVKWKGY~eseNTWEPeENL~ 143 (440)
..|+ -+||+.+... | ...|+|.+.||....+.|.|++.|.
T Consensus 38 ~lYe-AKIl~v~~~~~~~g~~~~~Y~VHY~GWn~~wDEWV~e~rll 82 (110)
T 3m9p_A 38 VLYD-AKIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVL 82 (110)
T ss_dssp CEEE-EEEEEEEEEECTTCCEEEEEEEEETTSCGGGCEEEEGGGEE
T ss_pred Ccee-eEEEEEEeccCcccccceEEEEEECCCCcchhhccCHhhhh
Confidence 4566 5677777753 3 4899999999999999999999885
No 54
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=84.07 E-value=1.3 Score=37.66 Aligned_cols=42 Identities=14% Similarity=0.214 Sum_probs=33.7
Q ss_pred CCceEEEEEEEEeEEe-----CCeEEEEEEecCCCCCCCceeecCCcC
Q 042818 101 DEGFFEIEAIRRKRVR-----KGQLQYLIKWRGWPENANTWEPLENLQ 143 (440)
Q Consensus 101 dEeEYEVEkILd~R~~-----~GkleYLVKWKGY~eseNTWEPeENL~ 143 (440)
+.-.|+ -+||+.+.. .+...|+|...||....+-|.|++.|.
T Consensus 36 g~~lYe-AKIl~v~~~~~~~~~~~~~Y~VHY~GWn~rwDEWV~edRil 82 (101)
T 3m9q_A 36 ARVLYT-SKVLNVFERRNEHGLRFYEYKIHFQGWRPSYDRAVRATVLL 82 (101)
T ss_dssp CCCEEE-EEEEEEEEEECTTSCEEEEEEEEETTSCGGGCEEECGGGEE
T ss_pred CCcceE-eEEEEEEecCCccccCceEEEEEeCCCCcCceeecCHHHcc
Confidence 345666 467777764 467899999999999999999999885
No 55
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=52.90 E-value=7.4 Score=34.58 Aligned_cols=23 Identities=17% Similarity=0.801 Sum_probs=21.9
Q ss_pred EEEEEecCCCCCCCceeecCCcC
Q 042818 121 QYLIKWRGWPENANTWEPLENLQ 143 (440)
Q Consensus 121 eYLVKWKGY~eseNTWEPeENL~ 143 (440)
.|+|...||....+.|.+++.|.
T Consensus 78 ~Y~VHY~GWn~rwDEWV~~dRil 100 (136)
T 2k3y_A 78 SFFIHYQGWKSSWDEWVGYDRIR 100 (136)
T ss_dssp EEEECCTTSCGGGCEEEETTTEE
T ss_pred eEEEEeCCcCCcceeeecHhhhh
Confidence 89999999999999999999985
No 56
>3e9g_A Chromatin modification-related protein EAF3; chromatin remodeling, chromo domain, transcription factor, transcription regulation; 2.50A {Saccharomyces cerevisiae} PDB: 2k3x_A 3e9f_A*
Probab=46.91 E-value=7.8 Score=34.43 Aligned_cols=27 Identities=15% Similarity=0.592 Sum_probs=23.7
Q ss_pred CCeEEEEEEecCCCCCCCceeecCCcC
Q 042818 117 KGQLQYLIKWRGWPENANTWEPLENLQ 143 (440)
Q Consensus 117 ~GkleYLVKWKGY~eseNTWEPeENL~ 143 (440)
.....|||.+.||....+.|.|++.|.
T Consensus 72 ~~~~~Y~VHY~GWn~~WDEWV~e~rvl 98 (130)
T 3e9g_A 72 INGKCFFIHYQGWKSSWDEWVGYDRIR 98 (130)
T ss_dssp TTSCEEEEEETTSCGGGCEEEETTTEE
T ss_pred ccCceEEEEeCCCCCChhhccCHhhhh
Confidence 345689999999999999999999885
No 57
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=25.86 E-value=94 Score=32.99 Aligned_cols=55 Identities=24% Similarity=0.589 Sum_probs=43.5
Q ss_pred CceEEEEEEEEeEEe----CCeEEEEEEecCCCCCCCceeecCCcCChHHHHHHHHHHh
Q 042818 102 EGFFEIEAIRRKRVR----KGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAFEESL 156 (440)
Q Consensus 102 EeEYEVEkILd~R~~----~GkleYLVKWKGY~eseNTWEPeENL~dc~ELIeeFe~k~ 156 (440)
...+.++.+.+.... .....+.+.|.++.....+|+|...+..|.+.|..+....
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~~~~ 368 (784)
T 4ft4_B 310 KDEFVVEKLVGICYGGSDRENGIYFKVQWEGYGPEEDTWEPIDNLSDCPQKIREFVQEG 368 (784)
T ss_dssp --CCCEEEEEEEEESCSSSCSSEEEEEEETTCCTTSCEEEESGGGTTCHHHHHHHHHHH
T ss_pred cccchhhhhcccccccccccccccchhhhcccccccccccccccccccchhcccccccc
Confidence 356777888777663 4568999999999999999999999998888877766554
No 58
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=22.59 E-value=43 Score=30.25 Aligned_cols=36 Identities=28% Similarity=0.313 Sum_probs=28.7
Q ss_pred EEEEEEecCCcEEEee------ccchhccC-CeeehhHHHhhhc
Q 042818 400 VTFMAVRSDGKEVMVD------NKYLKANN-PLLLINFYEQHLK 436 (440)
Q Consensus 400 vTF~A~RSDG~EV~VD------nk~LKann-PllLInfYEqHLr 436 (440)
=||+.++ +|++|+|| ||..-+.. .--|+.+.|.|||
T Consensus 97 PT~~fFk-~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r 139 (160)
T 2av4_A 97 VSVMFFY-RNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFR 139 (160)
T ss_dssp EEEEEEE-TTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHH
T ss_pred CEEEEEE-CCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHH
Confidence 4777775 89999998 67666654 6789999999987
No 59
>2hz5_A Dynein light chain 2A, cytoplasmic; DNLC2A, transport protein; 2.10A {Homo sapiens} SCOP: d.110.7.1 PDB: 2b95_A
Probab=22.04 E-value=50 Score=27.86 Aligned_cols=44 Identities=25% Similarity=0.470 Sum_probs=27.8
Q ss_pred ccceeeeecccccccccc---CCceeEEEEEEEEecCCcEEEe--eccch
Q 042818 375 ASAIVKILKPIDFSASVS---DNMQDVVVTFMAVRSDGKEVMV--DNKYL 419 (440)
Q Consensus 375 ~~~ItkIiKPv~ysasv~---~~vQdV~vTF~A~RSDG~EV~V--Dnk~L 419 (440)
+..+...|.++-..|.-. -|-+| -+||+-+|+.-.|+|| |++|+
T Consensus 49 ~~~yA~li~~L~~~A~~~vr~lDp~d-eL~fLRiRTkkhEimIapd~~~~ 97 (106)
T 2hz5_A 49 TTQYASLMHSFILKARSTVRDIDPQN-DLTFLRIRSKKNEIMVAPDKDYF 97 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTC-CEEEEEEEESSCEEEEEC---CE
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCC-CeEEEEEEeCCcEEEEEecCCEE
Confidence 445556666655444421 24455 5699999999999999 88876
Done!