Query 042820
Match_columns 120
No_of_seqs 116 out of 1132
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 09:50:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042820.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042820hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11597 heat shock chaperone 99.9 2.9E-27 6.2E-32 164.1 11.9 98 1-108 45-142 (142)
2 PRK10743 heat shock protein Ib 99.9 2.9E-26 6.3E-31 158.4 11.3 91 1-101 47-137 (137)
3 cd06472 ACD_ScHsp26_like Alpha 99.9 9.1E-26 2E-30 145.9 10.6 82 1-86 11-92 (92)
4 COG0071 IbpA Molecular chapero 99.9 1.3E-25 2.9E-30 156.3 11.6 95 1-101 52-146 (146)
5 PF00011 HSP20: Hsp20/alpha cr 99.9 9.3E-25 2E-29 142.9 11.3 94 1-101 9-102 (102)
6 cd06471 ACD_LpsHSP_like Group 99.9 4.3E-24 9.3E-29 138.1 10.0 82 1-86 12-93 (93)
7 cd06470 ACD_IbpA-B_like Alpha- 99.9 2.9E-23 6.2E-28 133.9 10.4 78 1-86 13-90 (90)
8 cd06497 ACD_alphaA-crystallin_ 99.9 6.2E-23 1.4E-27 131.5 9.2 74 1-86 12-86 (86)
9 cd06498 ACD_alphaB-crystallin_ 99.9 7.9E-23 1.7E-27 130.5 9.2 75 1-87 9-84 (84)
10 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 9.7E-23 2.1E-27 129.8 9.4 74 1-86 9-83 (83)
11 cd06481 ACD_HspB9_like Alpha c 99.9 1.3E-22 2.9E-27 130.3 9.3 78 1-86 9-87 (87)
12 cd06476 ACD_HspB2_like Alpha c 99.9 4.3E-22 9.2E-27 126.9 9.4 74 1-86 9-83 (83)
13 cd06482 ACD_HspB10 Alpha cryst 99.9 4.6E-22 1E-26 127.7 9.0 77 1-86 10-87 (87)
14 cd06479 ACD_HspB7_like Alpha c 99.9 7.4E-22 1.6E-26 125.3 8.4 71 1-86 10-81 (81)
15 cd06526 metazoan_ACD Alpha-cry 99.9 7.9E-22 1.7E-26 125.3 7.9 74 1-86 9-83 (83)
16 cd06464 ACD_sHsps-like Alpha-c 99.9 5.8E-21 1.2E-25 120.7 10.3 80 1-86 9-88 (88)
17 cd06477 ACD_HspB3_Like Alpha c 99.8 1E-20 2.2E-25 120.5 9.6 73 1-85 9-82 (83)
18 cd06475 ACD_HspB1_like Alpha c 99.8 1.1E-20 2.5E-25 121.0 9.1 73 1-85 12-85 (86)
19 cd06480 ACD_HspB8_like Alpha-c 99.7 1.4E-17 3E-22 107.7 9.3 73 1-85 17-90 (91)
20 KOG0710 Molecular chaperone (s 99.7 7.2E-18 1.6E-22 122.7 6.4 99 1-101 96-195 (196)
21 KOG3591 Alpha crystallins [Pos 99.7 7.1E-16 1.5E-20 110.3 11.8 95 1-108 74-169 (173)
22 cd00298 ACD_sHsps_p23-like Thi 99.5 5.9E-14 1.3E-18 85.5 8.6 73 1-86 8-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.3 3.4E-11 7.3E-16 74.8 8.3 64 1-89 8-71 (78)
24 cd06463 p23_like Proteins cont 98.9 1.2E-08 2.6E-13 63.1 8.5 68 2-89 9-76 (84)
25 PF05455 GvpH: GvpH; InterPro 98.8 2.7E-08 5.9E-13 71.1 8.4 66 2-90 105-171 (177)
26 cd06466 p23_CS_SGT1_like p23_l 98.5 1E-06 2.2E-11 55.0 7.2 68 2-89 10-77 (84)
27 PF08190 PIH1: pre-RNA process 98.3 3E-06 6.4E-11 65.3 7.7 61 2-85 264-327 (328)
28 PF04969 CS: CS domain; Inter 97.7 0.00093 2E-08 40.5 9.5 65 2-86 13-79 (79)
29 cd06467 p23_NUDC_like p23_like 97.5 0.00097 2.1E-08 41.5 7.2 65 2-89 11-77 (85)
30 cd06489 p23_CS_hSgt1_like p23_ 97.4 0.0017 3.7E-08 40.6 7.9 68 2-89 10-77 (84)
31 cd06465 p23_hB-ind1_like p23_l 97.3 0.0028 6E-08 41.6 8.6 66 2-88 13-78 (108)
32 cd06493 p23_NUDCD1_like p23_NU 97.2 0.0044 9.5E-08 39.0 7.8 65 2-89 11-77 (85)
33 cd06468 p23_CacyBP p23_like do 96.9 0.018 4E-07 36.3 8.6 68 2-89 14-85 (92)
34 cd06488 p23_melusin_like p23_l 96.5 0.047 1E-06 34.4 8.4 68 2-89 13-80 (87)
35 cd06494 p23_NUDCD2_like p23-li 95.6 0.12 2.6E-06 33.3 7.4 63 3-89 19-83 (93)
36 cd06492 p23_mNUDC_like p23-lik 94.5 0.44 9.5E-06 30.2 7.6 64 3-89 12-79 (87)
37 cd00237 p23 p23 binds heat sho 94.2 0.59 1.3E-05 30.8 8.0 66 2-89 14-79 (106)
38 PLN03088 SGT1, suppressor of 93.6 0.46 1E-05 37.4 7.7 68 2-89 169-236 (356)
39 KOG1309 Suppressor of G2 allel 92.4 0.55 1.2E-05 34.1 5.9 68 2-89 16-83 (196)
40 cd06495 p23_NUDCD3_like p23-li 90.4 3.6 7.7E-05 26.9 7.8 67 2-88 17-86 (102)
41 cd06482 ACD_HspB10 Alpha cryst 87.4 1.7 3.6E-05 27.6 4.5 35 55-90 9-43 (87)
42 cd06477 ACD_HspB3_Like Alpha c 86.4 1.7 3.6E-05 27.4 4.1 32 56-88 9-40 (83)
43 cd06476 ACD_HspB2_like Alpha c 86.4 1.7 3.6E-05 27.3 4.1 32 55-87 8-39 (83)
44 cd06497 ACD_alphaA-crystallin_ 86.2 1.8 4E-05 27.2 4.3 32 55-87 11-42 (86)
45 cd06478 ACD_HspB4-5-6 Alpha-cr 86.0 2 4.4E-05 26.7 4.4 32 55-87 8-39 (83)
46 cd06470 ACD_IbpA-B_like Alpha- 84.6 2.9 6.4E-05 26.2 4.7 35 55-90 12-46 (90)
47 cd06479 ACD_HspB7_like Alpha c 82.5 3.8 8.3E-05 25.5 4.5 31 56-87 10-40 (81)
48 PRK10743 heat shock protein Ib 82.5 6.7 0.00015 26.9 6.1 34 54-88 45-78 (137)
49 cd06498 ACD_alphaB-crystallin_ 82.3 3.4 7.4E-05 25.8 4.2 31 55-86 8-38 (84)
50 cd06526 metazoan_ACD Alpha-cry 82.1 3.7 8.1E-05 25.2 4.4 34 55-89 8-41 (83)
51 cd06471 ACD_LpsHSP_like Group 81.4 4.5 9.8E-05 25.3 4.6 33 55-88 11-43 (93)
52 PF13349 DUF4097: Domain of un 81.1 14 0.00031 25.0 8.4 62 14-83 86-147 (166)
53 cd06475 ACD_HspB1_like Alpha c 80.6 4.4 9.5E-05 25.4 4.3 32 55-87 11-42 (86)
54 PF14913 DPCD: DPCD protein fa 80.1 7.5 0.00016 28.4 5.8 33 56-88 132-170 (194)
55 cd06481 ACD_HspB9_like Alpha c 79.7 4.7 0.0001 25.3 4.2 33 56-89 9-41 (87)
56 cd06490 p23_NCB5OR p23_like do 79.4 13 0.00027 23.3 8.8 33 56-89 46-80 (87)
57 PF00011 HSP20: Hsp20/alpha cr 79.2 6.7 0.00014 24.7 4.9 32 55-87 8-39 (102)
58 PRK11597 heat shock chaperone 78.3 9.9 0.00021 26.3 5.8 33 55-88 44-76 (142)
59 cd06472 ACD_ScHsp26_like Alpha 77.5 6.4 0.00014 24.6 4.4 33 55-88 10-43 (92)
60 PF04972 BON: BON domain; Int 77.0 5.9 0.00013 22.8 3.9 25 8-33 12-36 (64)
61 cd06464 ACD_sHsps-like Alpha-c 72.2 12 0.00026 22.4 4.6 35 55-90 8-42 (88)
62 PF00347 Ribosomal_L6: Ribosom 71.6 9.9 0.00021 22.7 4.0 46 12-85 2-47 (77)
63 PF01954 DUF104: Protein of un 67.9 5.5 0.00012 23.6 2.2 32 69-104 3-34 (60)
64 cd06469 p23_DYX1C1_like p23_li 66.1 17 0.00037 21.6 4.3 32 1-33 38-70 (78)
65 PF08308 PEGA: PEGA domain; I 64.3 18 0.0004 21.2 4.1 32 1-32 37-68 (71)
66 PRK05518 rpl6p 50S ribosomal p 63.6 39 0.00085 24.3 6.4 21 12-33 13-33 (180)
67 TIGR03653 arch_L6P archaeal ri 61.7 49 0.0011 23.6 6.5 21 12-33 7-27 (170)
68 TIGR03654 L6_bact ribosomal pr 61.6 44 0.00094 23.8 6.3 21 12-33 11-31 (175)
69 cd06467 p23_NUDC_like p23_like 60.6 34 0.00074 20.5 5.0 30 56-85 10-39 (85)
70 COG0071 IbpA Molecular chapero 60.0 24 0.00052 24.1 4.6 33 55-88 51-83 (146)
71 KOG2265 Nuclear distribution p 59.0 37 0.00081 24.5 5.4 60 7-89 37-97 (179)
72 PRK05498 rplF 50S ribosomal pr 58.6 45 0.00098 23.8 6.0 21 12-33 12-32 (178)
73 CHL00140 rpl6 ribosomal protei 55.3 55 0.0012 23.4 6.0 21 12-33 12-32 (178)
74 PTZ00027 60S ribosomal protein 53.8 56 0.0012 23.7 5.8 22 11-33 12-33 (190)
75 cd06494 p23_NUDCD2_like p23-li 52.9 33 0.00071 21.8 4.0 29 56-84 17-45 (93)
76 KOG3413 Mitochondrial matrix p 49.9 8.5 0.00019 27.0 1.0 25 62-86 65-89 (156)
77 PTZ00179 60S ribosomal protein 47.7 68 0.0015 23.2 5.4 21 12-33 12-32 (189)
78 PRK11198 LysM domain/BON super 45.0 36 0.00077 23.4 3.5 25 8-33 38-62 (147)
79 cd00503 Frataxin Frataxin is a 43.8 26 0.00055 23.0 2.5 17 69-85 28-44 (105)
80 PF01491 Frataxin_Cyay: Fratax 43.5 32 0.00069 22.6 2.9 18 69-86 30-47 (109)
81 KOG3591 Alpha crystallins [Pos 41.4 22 0.00047 25.4 2.0 25 9-33 126-150 (173)
82 PRK00446 cyaY frataxin-like pr 40.0 29 0.00063 22.8 2.3 17 71-87 29-45 (105)
83 TIGR03421 FeS_CyaY iron donor 39.6 28 0.00061 22.7 2.2 17 70-86 26-42 (102)
84 cd02175 GH16_lichenase lichena 39.1 1.3E+02 0.0028 21.6 5.9 50 11-65 30-80 (212)
85 cd02180 GH16_fungal_KRE6_gluca 39.1 99 0.0021 24.0 5.5 50 11-65 39-91 (295)
86 COG5091 SGT1 Suppressor of G2 38.7 18 0.00039 28.3 1.3 70 2-90 189-258 (368)
87 PF07873 YabP: YabP family; I 38.2 27 0.00059 20.6 1.8 23 10-33 23-45 (66)
88 cd02178 GH16_beta_agarase Beta 35.1 85 0.0018 23.4 4.5 48 17-65 60-110 (258)
89 PRK10568 periplasmic protein; 33.7 75 0.0016 23.0 3.9 26 7-33 72-97 (203)
90 PRK13726 conjugal transfer pil 33.1 99 0.0022 22.4 4.4 21 12-33 130-150 (188)
91 TIGR02934 nifT_nitrog probable 32.3 55 0.0012 19.9 2.4 23 77-103 10-32 (67)
92 PF14814 UB2H: Bifunctional tr 32.1 1.2E+02 0.0025 18.8 4.1 42 42-83 29-72 (85)
93 TIGR03422 mito_frataxin fratax 31.4 33 0.00072 22.2 1.5 15 72-86 30-44 (97)
94 PF14014 DUF4230: Protein of u 30.1 45 0.00097 22.6 2.1 33 56-88 42-79 (157)
95 TIGR02856 spore_yqfC sporulati 29.5 43 0.00093 21.1 1.8 23 10-33 41-63 (85)
96 KOG0100 Molecular chaperones G 29.3 3.3E+02 0.0071 22.9 7.1 51 53-106 486-539 (663)
97 PF05309 TraE: TraE protein; 28.3 1.2E+02 0.0027 21.4 4.2 22 11-33 129-150 (187)
98 PF12080 GldM_C: GldM C-termin 27.4 96 0.0021 22.2 3.5 25 3-28 18-42 (181)
99 PF06988 NifT: NifT/FixU prote 26.4 74 0.0016 19.1 2.3 21 77-101 10-30 (64)
100 PF13600 DUF4140: N-terminal d 26.3 1.4E+02 0.0029 18.9 3.8 18 61-78 30-47 (104)
101 PF12673 DUF3794: Domain of un 26.1 1.5E+02 0.0033 17.6 7.7 45 15-63 16-62 (87)
102 cd01759 PLAT_PL PLAT/LH2 domai 25.7 2E+02 0.0044 19.0 8.0 46 55-106 45-91 (113)
103 cd06407 PB1_NLP A PB1 domain i 25.6 66 0.0014 20.0 2.1 18 70-87 2-19 (82)
104 TIGR02892 spore_yabP sporulati 25.3 65 0.0014 20.3 2.0 23 10-33 22-44 (85)
105 PF10365 DUF2436: Domain of un 24.8 1E+02 0.0022 21.7 3.0 49 54-104 75-128 (161)
106 PF08300 HCV_NS5a_1a: Hepatiti 24.6 1.1E+02 0.0024 18.3 2.7 24 61-87 23-46 (62)
107 PF00722 Glyco_hydro_16: Glyco 24.3 2.4E+02 0.0052 19.3 5.6 46 16-65 13-59 (185)
108 cd02177 GH16_kappa_carrageenas 24.3 2.2E+02 0.0048 21.7 5.1 48 16-64 45-103 (269)
109 PF14864 Alkyl_sulf_C: Alkyl s 23.2 1.9E+02 0.0042 18.9 4.2 27 56-84 34-60 (125)
110 PRK11023 outer membrane lipopr 23.1 1.3E+02 0.0029 21.5 3.6 25 8-33 62-87 (191)
111 KOG1667 Zn2+-binding protein M 22.4 3.8E+02 0.0082 20.8 7.3 36 55-90 261-296 (320)
112 cd02182 GH16_Strep_laminarinas 22.3 2.4E+02 0.0052 20.9 5.0 43 17-64 48-98 (259)
113 COG2880 Uncharacterized protei 22.2 7.9 0.00017 23.5 -2.5 14 69-82 5-18 (67)
114 PF13620 CarboxypepD_reg: Carb 21.8 1.1E+02 0.0025 17.8 2.6 21 1-21 50-71 (82)
115 PRK10568 periplasmic protein; 21.6 1.5E+02 0.0033 21.4 3.7 25 8-33 152-176 (203)
116 cd00413 Glyco_hydrolase_16 gly 21.1 3E+02 0.0065 19.2 5.8 50 11-65 28-79 (210)
117 TIGR02761 TraE_TIGR type IV co 20.6 2.9E+02 0.0063 19.5 4.9 22 11-33 129-150 (181)
118 PF05258 DUF721: Protein of un 20.5 1.1E+02 0.0023 18.2 2.4 15 72-86 43-57 (89)
119 COG1965 CyaY Protein implicate 20.4 90 0.002 20.7 2.0 17 71-87 30-46 (106)
120 PF14545 DBB: Dof, BCAP, and B 20.4 3.1E+02 0.0066 19.1 4.8 32 1-32 51-85 (142)
121 PF15525 DUF4652: Domain of un 20.0 3.7E+02 0.008 19.8 7.2 60 20-85 121-180 (200)
No 1
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.95 E-value=2.9e-27 Score=164.14 Aligned_cols=98 Identities=28% Similarity=0.380 Sum_probs=86.7
Q ss_pred CEEEEEeCCCCCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEeCCEE
Q 042820 1 HVITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLENGAL 80 (120)
Q Consensus 1 yii~~~lPG~~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~nGiL 80 (120)
|+|.++|||++++||+|++.+ +.|+|+|+++. . .++.+|+++||.+|.|.|+|.||.+||.+ +|+|+||||
T Consensus 45 y~v~adlPGv~kedi~V~v~~-~~LtI~ge~~~----~--~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A~~~nGVL 115 (142)
T PRK11597 45 YRITLALAGFRQEDLDIQLEG-TRLTVKGTPEQ----P--EKEVKWLHQGLVNQPFSLSFTLAENMEVS--GATFVNGLL 115 (142)
T ss_pred EEEEEEeCCCCHHHeEEEEEC-CEEEEEEEEcc----c--cCCCcEEEEEEeCcEEEEEEECCCCcccC--cCEEcCCEE
Confidence 789999999999999999999 99999999765 2 25678999999999999999999999998 799999999
Q ss_pred EEEEeCcccccCCCCeEEEeeeCCCCCC
Q 042820 81 RIKVPELAEEKRRQPKVISINEEPAGNS 108 (120)
Q Consensus 81 ~I~lpK~~~~~~~~~~~I~I~~~~~~~~ 108 (120)
+|+|||..++ ..++++|+|+.-++.+|
T Consensus 116 ~I~lPK~~~~-~~~~rkI~I~~~~~~~~ 142 (142)
T PRK11597 116 HIDLIRNEPE-AIAPQRIAISERPALNS 142 (142)
T ss_pred EEEEeccCcc-ccCCcEEEECCccccCC
Confidence 9999997544 35789999988776553
No 2
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.94 E-value=2.9e-26 Score=158.39 Aligned_cols=91 Identities=23% Similarity=0.393 Sum_probs=81.0
Q ss_pred CEEEEEeCCCCCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEeCCEE
Q 042820 1 HVITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLENGAL 80 (120)
Q Consensus 1 yii~~~lPG~~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~nGiL 80 (120)
|+|.++|||++++||+|++.+ +.|+|+|+++. + .++.+|+++||.+|+|.|+|.||.+||.+ +|+|+||||
T Consensus 47 ~~v~aelPGv~kedi~V~v~~-~~LtI~ge~~~----~--~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~--~A~~~dGVL 117 (137)
T PRK10743 47 YRIAIAVAGFAESELEITAQD-NLLVVKGAHAD----E--QKERTYLYQGIAERNFERKFQLAENIHVR--GANLVNGLL 117 (137)
T ss_pred EEEEEECCCCCHHHeEEEEEC-CEEEEEEEECc----c--ccCCcEEEEEEECCEEEEEEECCCCcccC--cCEEeCCEE
Confidence 789999999999999999999 99999999776 2 25677999999999999999999999998 599999999
Q ss_pred EEEEeCcccccCCCCeEEEee
Q 042820 81 RIKVPELAEEKRRQPKVISIN 101 (120)
Q Consensus 81 ~I~lpK~~~~~~~~~~~I~I~ 101 (120)
+|+|||..++ ...+|+|+|+
T Consensus 118 ~I~lPK~~~~-~~~~r~I~I~ 137 (137)
T PRK10743 118 YIDLERVIPE-AKKPRRIEIN 137 (137)
T ss_pred EEEEeCCCcc-ccCCeEEeeC
Confidence 9999997544 4578999984
No 3
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.93 E-value=9.1e-26 Score=145.92 Aligned_cols=82 Identities=51% Similarity=0.932 Sum_probs=75.5
Q ss_pred CEEEEEeCCCCCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEeCCEE
Q 042820 1 HVITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLENGAL 80 (120)
Q Consensus 1 yii~~~lPG~~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~nGiL 80 (120)
|+|.++|||++++||+|++.+++.|+|+|++.. +.....++++++|+.+|.|.|+|+||..||++.|+|+|+||+|
T Consensus 11 ~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~----~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~~~nGvL 86 (92)
T cd06472 11 HVFKADVPGVKKEDVKVEVEDGRVLRISGERKK----EEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAFLENGVL 86 (92)
T ss_pred EEEEEECCCCChHhEEEEEeCCCEEEEEEEecc----cccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEEEECCEE
Confidence 789999999999999999987459999999976 3445678899999999999999999999999999999999999
Q ss_pred EEEEeC
Q 042820 81 RIKVPE 86 (120)
Q Consensus 81 ~I~lpK 86 (120)
+|+|||
T Consensus 87 ~I~lPK 92 (92)
T cd06472 87 TVTVPK 92 (92)
T ss_pred EEEecC
Confidence 999997
No 4
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.3e-25 Score=156.28 Aligned_cols=95 Identities=36% Similarity=0.632 Sum_probs=87.5
Q ss_pred CEEEEEeCCCCCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEeCCEE
Q 042820 1 HVITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLENGAL 80 (120)
Q Consensus 1 yii~~~lPG~~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~nGiL 80 (120)
|+|.++||||+++||+|++.+ +.|+|+|++.. +...+...++++|+.+|.|+|+|+||..|+++.++|+|+||+|
T Consensus 52 ~~I~~elPG~~kedI~I~~~~-~~l~I~g~~~~----~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~A~~~nGvL 126 (146)
T COG0071 52 YRITAELPGVDKEDIEITVEG-NTLTIRGEREE----EEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKAKYKNGLL 126 (146)
T ss_pred EEEEEEcCCCChHHeEEEEEC-CEEEEEEEecc----cccccCCceEEEEEEeeeEEEEEECcccccccceeeEeeCcEE
Confidence 789999999999999999999 99999999997 5566788999999999999999999999999999999999999
Q ss_pred EEEEeCcccccCCCCeEEEee
Q 042820 81 RIKVPELAEEKRRQPKVISIN 101 (120)
Q Consensus 81 ~I~lpK~~~~~~~~~~~I~I~ 101 (120)
+|+|||..+++ ...++|.|+
T Consensus 127 ~I~lpk~~~~~-~~~~~i~I~ 146 (146)
T COG0071 127 TVTLPKAEPEE-KKPKRIEIE 146 (146)
T ss_pred EEEEecccccc-ccCceeecC
Confidence 99999999873 567888774
No 5
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.92 E-value=9.3e-25 Score=142.87 Aligned_cols=94 Identities=37% Similarity=0.686 Sum_probs=78.1
Q ss_pred CEEEEEeCCCCCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEeCCEE
Q 042820 1 HVITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLENGAL 80 (120)
Q Consensus 1 yii~~~lPG~~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~nGiL 80 (120)
|.|.++||||++++|+|++.+ +.|.|+|.+.. ...+..++.+|++++.|.|+|+||.++|++.|+|.|+||+|
T Consensus 9 ~~i~~~lpG~~~edi~I~~~~-~~L~I~g~~~~------~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~GvL 81 (102)
T PF00011_consen 9 YIIKVDLPGFDKEDIKIKVDD-NKLVISGKRKE------EEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENGVL 81 (102)
T ss_dssp EEEEEE-TTS-GGGEEEEEET-TEEEEEEEEEG------EECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTSEE
T ss_pred EEEEEECCCCChHHEEEEEec-Cccceeceeee------eeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCCEE
Confidence 789999999999999999999 99999999994 23567788889999999999999999999999999999999
Q ss_pred EEEEeCcccccCCCCeEEEee
Q 042820 81 RIKVPELAEEKRRQPKVISIN 101 (120)
Q Consensus 81 ~I~lpK~~~~~~~~~~~I~I~ 101 (120)
+|++||....+...+++|+|+
T Consensus 82 ~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 82 TITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp EEEEEBSSSCTTSSSCEE-ET
T ss_pred EEEEEccccccCCCCeEEEeC
Confidence 999999998855578999984
No 6
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.91 E-value=4.3e-24 Score=138.09 Aligned_cols=82 Identities=30% Similarity=0.604 Sum_probs=73.4
Q ss_pred CEEEEEeCCCCCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEeCCEE
Q 042820 1 HVITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLENGAL 80 (120)
Q Consensus 1 yii~~~lPG~~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~nGiL 80 (120)
|+|.++|||++++||+|.+.+ +.|+|+|+++... +.....++++++|+.+|.|.|+|.|| ++|.+.++|+|+||+|
T Consensus 12 ~~i~~~lPGv~~edi~v~~~~-~~L~I~g~~~~~~--~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~A~~~dGvL 87 (93)
T cd06471 12 YIVEADLPGFKKEDIKLDYKD-GYLTISAKRDESK--DEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIKAKYENGVL 87 (93)
T ss_pred EEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcccc--ccccccCCEEEEeeeccEEEEEEECC-CCCHHHCEEEEECCEE
Confidence 789999999999999999999 9999999998621 12234468999999999999999999 7999999999999999
Q ss_pred EEEEeC
Q 042820 81 RIKVPE 86 (120)
Q Consensus 81 ~I~lpK 86 (120)
+|++||
T Consensus 88 ~I~lPK 93 (93)
T cd06471 88 KITLPK 93 (93)
T ss_pred EEEEcC
Confidence 999997
No 7
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.90 E-value=2.9e-23 Score=133.93 Aligned_cols=78 Identities=32% Similarity=0.471 Sum_probs=71.8
Q ss_pred CEEEEEeCCCCCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEeCCEE
Q 042820 1 HVITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLENGAL 80 (120)
Q Consensus 1 yii~~~lPG~~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~nGiL 80 (120)
|+|.++|||++++||+|++.+ +.|+|+|+++. ... .+.+|+++|+.+|.|.|+|.||.++|.+ +|+|+||+|
T Consensus 13 ~~v~~~lPG~~kedi~v~~~~-~~L~I~g~~~~----~~~-~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~~~~GvL 84 (90)
T cd06470 13 YRITLAVAGFSEDDLEIEVEN-NQLTVTGKKAD----EEN-EEREYLHRGIAKRAFERSFNLADHVKVK--GAELENGLL 84 (90)
T ss_pred EEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcc----ccc-CCCcEEEEEEeceEEEEEEECCCCceEC--eeEEeCCEE
Confidence 789999999999999999999 99999999988 332 6788999999999999999999999864 999999999
Q ss_pred EEEEeC
Q 042820 81 RIKVPE 86 (120)
Q Consensus 81 ~I~lpK 86 (120)
+|+||+
T Consensus 85 ~I~l~~ 90 (90)
T cd06470 85 TIDLER 90 (90)
T ss_pred EEEEEC
Confidence 999985
No 8
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.89 E-value=6.2e-23 Score=131.54 Aligned_cols=74 Identities=19% Similarity=0.461 Sum_probs=65.6
Q ss_pred CEEEEEeCCCCCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEE-eCCE
Q 042820 1 HVITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHL-ENGA 79 (120)
Q Consensus 1 yii~~~lPG~~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~-~nGi 79 (120)
|.|.++||||+++||+|++.+ +.|+|+|++.. . . .+..|+++| |.|+|.||.+||++.|+|.| +||+
T Consensus 12 ~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~----~-~-~~~~~~~~e-----f~R~~~LP~~Vd~~~i~A~~~~dGv 79 (86)
T cd06497 12 FTIYLDVKHFSPEDLTVKVLD-DYVEIHGKHSE----R-Q-DDHGYISRE-----FHRRYRLPSNVDQSAITCSLSADGM 79 (86)
T ss_pred EEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcc----e-e-CCCCEEEEE-----EEEEEECCCCCChHHeEEEeCCCCE
Confidence 789999999999999999999 99999998754 2 2 344566654 99999999999999999999 7999
Q ss_pred EEEEEeC
Q 042820 80 LRIKVPE 86 (120)
Q Consensus 80 L~I~lpK 86 (120)
|+|++||
T Consensus 80 L~I~~PK 86 (86)
T cd06497 80 LTFSGPK 86 (86)
T ss_pred EEEEecC
Confidence 9999997
No 9
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.89 E-value=7.9e-23 Score=130.54 Aligned_cols=75 Identities=19% Similarity=0.437 Sum_probs=65.5
Q ss_pred CEEEEEeCCCCCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEe-CCE
Q 042820 1 HVITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLE-NGA 79 (120)
Q Consensus 1 yii~~~lPG~~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~-nGi 79 (120)
|.|.++||||+++||+|++.+ +.|+|+|++.. +. ++..|+++ .|.|+|.||.+||++.|+|+|+ ||+
T Consensus 9 ~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~----~~--~~~~~~~~-----eF~R~~~LP~~vd~~~i~A~~~~dGv 76 (84)
T cd06498 9 FSVNLDVKHFSPEELKVKVLG-DFIEIHGKHEE----RQ--DEHGFISR-----EFQRKYRIPADVDPLTITSSLSPDGV 76 (84)
T ss_pred EEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcc----ee--CCCCEEEE-----EEEEEEECCCCCChHHcEEEeCCCCE
Confidence 789999999999999999999 99999998755 22 23455544 3999999999999999999995 999
Q ss_pred EEEEEeCc
Q 042820 80 LRIKVPEL 87 (120)
Q Consensus 80 L~I~lpK~ 87 (120)
|+|++||+
T Consensus 77 L~I~lPk~ 84 (84)
T cd06498 77 LTVCGPRK 84 (84)
T ss_pred EEEEEeCC
Confidence 99999985
No 10
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.89 E-value=9.7e-23 Score=129.81 Aligned_cols=74 Identities=20% Similarity=0.473 Sum_probs=65.0
Q ss_pred CEEEEEeCCCCCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEE-eCCE
Q 042820 1 HVITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHL-ENGA 79 (120)
Q Consensus 1 yii~~~lPG~~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~-~nGi 79 (120)
|.|.++||||+++||+|++.+ +.|+|+|++.. .. .+..|+++| |.|+|.||.+||++.|+|+| +||+
T Consensus 9 ~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~----~~--~~~~~~~~e-----f~R~~~LP~~vd~~~i~A~~~~dGv 76 (83)
T cd06478 9 FSVNLDVKHFSPEELSVKVLG-DFVEIHGKHEE----RQ--DEHGFISRE-----FHRRYRLPPGVDPAAITSSLSADGV 76 (83)
T ss_pred EEEEEECCCCCHHHeEEEEEC-CEEEEEEEEce----Ec--CCCCEEEEE-----EEEEEECCCCcChHHeEEEECCCCE
Confidence 789999999999999999999 99999998754 22 234565554 99999999999999999999 6999
Q ss_pred EEEEEeC
Q 042820 80 LRIKVPE 86 (120)
Q Consensus 80 L~I~lpK 86 (120)
|+|++||
T Consensus 77 L~I~~PK 83 (83)
T cd06478 77 LTISGPR 83 (83)
T ss_pred EEEEecC
Confidence 9999997
No 11
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.89 E-value=1.3e-22 Score=130.27 Aligned_cols=78 Identities=24% Similarity=0.489 Sum_probs=68.1
Q ss_pred CEEEEEeCCCCCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEE-eCCE
Q 042820 1 HVITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHL-ENGA 79 (120)
Q Consensus 1 yii~~~lPG~~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~-~nGi 79 (120)
|.|.++||||+++||+|++.+ +.|+|+|++.. ........|+ +.+|.|.|+|.||..||.+.|+|.| +||+
T Consensus 9 ~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~----~~~~~~~~~~---~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGv 80 (87)
T cd06481 9 FSLKLDVRGFSPEDLSVRVDG-RKLVVTGKREK----KNEDEKGSFS---YEYQEFVREAQLPEHVDPEAVTCSLSPSGH 80 (87)
T ss_pred EEEEEECCCCChHHeEEEEEC-CEEEEEEEEee----ecccCCCcEE---EEeeEEEEEEECCCCcChHHeEEEeCCCce
Confidence 789999999999999999999 99999999876 2333344554 3478899999999999999999999 9999
Q ss_pred EEEEEeC
Q 042820 80 LRIKVPE 86 (120)
Q Consensus 80 L~I~lpK 86 (120)
|+|++|+
T Consensus 81 L~I~~P~ 87 (87)
T cd06481 81 LHIRAPR 87 (87)
T ss_pred EEEEcCC
Confidence 9999995
No 12
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.88 E-value=4.3e-22 Score=126.93 Aligned_cols=74 Identities=24% Similarity=0.423 Sum_probs=64.1
Q ss_pred CEEEEEeCCCCCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEe-CCE
Q 042820 1 HVITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLE-NGA 79 (120)
Q Consensus 1 yii~~~lPG~~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~-nGi 79 (120)
|.|.++||||+++||+|++.+ +.|+|+|++.. .. ....+.++ .|.|+|.||.+||++.|+|.|. ||+
T Consensus 9 y~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~----~~--~~~~~~~~-----eF~R~~~LP~~vd~~~v~A~~~~dGv 76 (83)
T cd06476 9 YQVFLDVCHFTPDEITVRTVD-NLLEVSARHPQ----RM--DRHGFVSR-----EFTRTYILPMDVDPLLVRASLSHDGI 76 (83)
T ss_pred EEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEcc----ee--cCCCEEEE-----EEEEEEECCCCCChhhEEEEecCCCE
Confidence 789999999999999999999 99999999865 22 22334433 4999999999999999999996 999
Q ss_pred EEEEEeC
Q 042820 80 LRIKVPE 86 (120)
Q Consensus 80 L~I~lpK 86 (120)
|+|++||
T Consensus 77 L~I~~Pr 83 (83)
T cd06476 77 LCIQAPR 83 (83)
T ss_pred EEEEecC
Confidence 9999997
No 13
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.87 E-value=4.6e-22 Score=127.75 Aligned_cols=77 Identities=21% Similarity=0.427 Sum_probs=67.2
Q ss_pred CEEEEEeCCCCCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEeCC-E
Q 042820 1 HVITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLENG-A 79 (120)
Q Consensus 1 yii~~~lPG~~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~nG-i 79 (120)
|+|.++||||+++||+|++.+ +.|+|+|+++. ...... ..||.+|.|.|+|.||.+||.+.|+|+|+|| +
T Consensus 10 ~~v~adlPG~~kedI~V~v~~-~~L~I~ger~~----~~e~~~----~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~ 80 (87)
T cd06482 10 VLASVDVCGFEPDQVKVKVKD-GKVQVSAEREN----RYDCLG----SKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSV 80 (87)
T ss_pred EEEEEECCCCCHHHeEEEEEC-CEEEEEEEEec----ccccCC----ccEEEEEEEEEEEECCCCcChHHcEEEEcCCCE
Confidence 789999999999999999999 99999999987 222111 2478999999999999999999999999876 9
Q ss_pred EEEEEeC
Q 042820 80 LRIKVPE 86 (120)
Q Consensus 80 L~I~lpK 86 (120)
|+|.-|.
T Consensus 81 l~i~~~~ 87 (87)
T cd06482 81 VKIETPC 87 (87)
T ss_pred EEEeeCC
Confidence 9998773
No 14
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.87 E-value=7.4e-22 Score=125.28 Aligned_cols=71 Identities=18% Similarity=0.357 Sum_probs=64.1
Q ss_pred CEEEEEeCCCCCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEE-eCCE
Q 042820 1 HVITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHL-ENGA 79 (120)
Q Consensus 1 yii~~~lPG~~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~-~nGi 79 (120)
|.|.++||||+++||+|++.+ +.|+|+|+++. .. + ..+|.|.|+|.||.+||++.|+|+| +||+
T Consensus 10 ~~v~~dlpG~~pedi~V~v~~-~~L~I~ger~~----~~----~------~~~g~F~R~~~LP~~vd~e~v~A~l~~~Gv 74 (81)
T cd06479 10 YQFAVDVSDFSPEDIIVTTSN-NQIEVHAEKLA----SD----G------TVMNTFTHKCQLPEDVDPTSVSSSLGEDGT 74 (81)
T ss_pred EEEEEECCCCCHHHeEEEEEC-CEEEEEEEEec----cC----C------CEEEEEEEEEECCCCcCHHHeEEEecCCCE
Confidence 789999999999999999999 99999999876 21 1 2468899999999999999999997 9999
Q ss_pred EEEEEeC
Q 042820 80 LRIKVPE 86 (120)
Q Consensus 80 L~I~lpK 86 (120)
|+|++++
T Consensus 75 L~I~~~~ 81 (81)
T cd06479 75 LTIKARR 81 (81)
T ss_pred EEEEecC
Confidence 9999985
No 15
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.87 E-value=7.9e-22 Score=125.29 Aligned_cols=74 Identities=28% Similarity=0.538 Sum_probs=65.3
Q ss_pred CEEEEEeCCCCCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEeC-CE
Q 042820 1 HVITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLEN-GA 79 (120)
Q Consensus 1 yii~~~lPG~~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~n-Gi 79 (120)
|.|.++||||+++||+|++.+ +.|+|+|++.. ... .. ++.++.|.|+|.||.+||++.++|.|.| |+
T Consensus 9 ~~v~~dlpG~~~edI~v~v~~-~~L~I~g~~~~----~~~--~~-----~~~~~~f~r~~~LP~~vd~~~i~A~~~~~Gv 76 (83)
T cd06526 9 FQVTLDVKGFKPEELKVKVSD-NKLVVEGKHEE----RED--EH-----GYVSREFTRRYQLPEGVDPDSVTSSLSSDGV 76 (83)
T ss_pred EEEEEECCCCCHHHcEEEEEC-CEEEEEEEEee----ecc--CC-----CEEEEEEEEEEECCCCCChHHeEEEeCCCcE
Confidence 789999999999999999999 99999999987 221 11 2345779999999999999999999998 99
Q ss_pred EEEEEeC
Q 042820 80 LRIKVPE 86 (120)
Q Consensus 80 L~I~lpK 86 (120)
|+|++||
T Consensus 77 L~I~~Pk 83 (83)
T cd06526 77 LTIEAPK 83 (83)
T ss_pred EEEEecC
Confidence 9999997
No 16
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.86 E-value=5.8e-21 Score=120.72 Aligned_cols=80 Identities=44% Similarity=0.791 Sum_probs=73.2
Q ss_pred CEEEEEeCCCCCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEeCCEE
Q 042820 1 HVITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLENGAL 80 (120)
Q Consensus 1 yii~~~lPG~~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~nGiL 80 (120)
|+|.++|||+++++|+|++.+ +.|.|+|++... .. ....+...++.+|.|.|+|.||..+|++.++|.|.||+|
T Consensus 9 ~~i~~~lpg~~~~~i~V~v~~-~~l~I~g~~~~~----~~-~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~G~L 82 (88)
T cd06464 9 YVVEADLPGFKKEDIKVEVED-GVLTISGEREEE----EE-EEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLENGVL 82 (88)
T ss_pred EEEEEECCCCCHHHeEEEEEC-CEEEEEEEEecc----cc-cCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeCCEE
Confidence 789999999999999999999 999999999982 22 233778889999999999999999999999999999999
Q ss_pred EEEEeC
Q 042820 81 RIKVPE 86 (120)
Q Consensus 81 ~I~lpK 86 (120)
+|++||
T Consensus 83 ~I~~pk 88 (88)
T cd06464 83 TITLPK 88 (88)
T ss_pred EEEEcC
Confidence 999997
No 17
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.85 E-value=1e-20 Score=120.55 Aligned_cols=73 Identities=22% Similarity=0.393 Sum_probs=63.0
Q ss_pred CEEEEEeCCCCCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEE-eCCE
Q 042820 1 HVITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHL-ENGA 79 (120)
Q Consensus 1 yii~~~lPG~~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~-~nGi 79 (120)
|.|.++||||+++||+|++.+ +.|+|+|++.. +. ....+.. ++|.|+|.||.+||++.|+|+| +||+
T Consensus 9 ~~v~~dlpG~~~edI~V~v~~-~~L~I~ge~~~----~~--~~~~~~~-----r~F~R~~~LP~~Vd~~~v~A~~~~dGv 76 (83)
T cd06477 9 FQILLDVVQFRPEDIIIQVFE-GWLLIKGQHGV----RM--DEHGFIS-----RSFTRQYQLPDGVEHKDLSAMLCHDGI 76 (83)
T ss_pred EEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEcc----cc--CCCCEEE-----EEEEEEEECCCCcchheEEEEEcCCCE
Confidence 789999999999999999999 99999999876 22 2233332 2699999999999999999998 7999
Q ss_pred EEEEEe
Q 042820 80 LRIKVP 85 (120)
Q Consensus 80 L~I~lp 85 (120)
|+|..|
T Consensus 77 L~I~~~ 82 (83)
T cd06477 77 LVVETK 82 (83)
T ss_pred EEEEec
Confidence 999875
No 18
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.84 E-value=1.1e-20 Score=121.05 Aligned_cols=73 Identities=19% Similarity=0.424 Sum_probs=63.1
Q ss_pred CEEEEEeCCCCCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEe-CCE
Q 042820 1 HVITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLE-NGA 79 (120)
Q Consensus 1 yii~~~lPG~~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~-nGi 79 (120)
|.|.++||||++++|+|++.+ +.|+|+|++.. ... ...+. .+.|.|+|.||..||++.|+|.|. ||+
T Consensus 12 ~~v~~dlPG~~~edi~V~v~~-~~L~I~g~~~~----~~~--~~~~~-----~~~f~R~f~LP~~vd~~~v~A~~~~dGv 79 (86)
T cd06475 12 WKVSLDVNHFAPEELVVKTKD-GVVEITGKHEE----KQD--EHGFV-----SRCFTRKYTLPPGVDPTAVTSSLSPDGI 79 (86)
T ss_pred EEEEEECCCCCHHHEEEEEEC-CEEEEEEEECc----CcC--CCCEE-----EEEEEEEEECCCCCCHHHcEEEECCCCe
Confidence 689999999999999999999 99999999865 222 22333 236999999999999999999997 999
Q ss_pred EEEEEe
Q 042820 80 LRIKVP 85 (120)
Q Consensus 80 L~I~lp 85 (120)
|+|++|
T Consensus 80 L~I~lP 85 (86)
T cd06475 80 LTVEAP 85 (86)
T ss_pred EEEEec
Confidence 999998
No 19
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.75 E-value=1.4e-17 Score=107.74 Aligned_cols=73 Identities=21% Similarity=0.360 Sum_probs=63.8
Q ss_pred CEEEEEeCCCCCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEe-CCE
Q 042820 1 HVITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLE-NGA 79 (120)
Q Consensus 1 yii~~~lPG~~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~-nGi 79 (120)
|.|.+++.||+++||+|++.+ +.|+|+|++.. .. .+ +.+. .+.|.|+|.||.+||++.|+|.|. ||+
T Consensus 17 f~v~ldv~gF~pEDL~Vkv~~-~~L~V~Gkh~~----~~-~e-~g~~-----~r~F~R~~~LP~~Vd~~~v~s~l~~dGv 84 (91)
T cd06480 17 WKVCVNVHSFKPEELTVKTKD-GFVEVSGKHEE----QQ-KE-GGIV-----SKNFTKKIQLPPEVDPVTVFASLSPEGL 84 (91)
T ss_pred EEEEEEeCCCCHHHcEEEEEC-CEEEEEEEECc----cc-CC-CCEE-----EEEEEEEEECCCCCCchhEEEEeCCCCe
Confidence 789999999999999999999 99999999887 32 22 2333 256999999999999999999998 999
Q ss_pred EEEEEe
Q 042820 80 LRIKVP 85 (120)
Q Consensus 80 L~I~lp 85 (120)
|+|.+|
T Consensus 85 L~IeaP 90 (91)
T cd06480 85 LIIEAP 90 (91)
T ss_pred EEEEcC
Confidence 999988
No 20
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=7.2e-18 Score=122.69 Aligned_cols=99 Identities=41% Similarity=0.794 Sum_probs=83.5
Q ss_pred CEEEEEeCCCCCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEeCCEE
Q 042820 1 HVITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLENGAL 80 (120)
Q Consensus 1 yii~~~lPG~~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~nGiL 80 (120)
|++.+++||+.+++++|+++++++|.|+|++.... +.......|+..|+.+|.|.|.|.||++++.+.|+|.|+||+|
T Consensus 96 ~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~--e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~d~ikA~~~nGVL 173 (196)
T KOG0710|consen 96 HEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEE--EESGSGKKWKRVERKLGKFKRRFELPENVDVDEIKAEMENGVL 173 (196)
T ss_pred eEEEeeCCCCCchhceEEeccCcEEEEeccccccc--ccccCCccceeehhcccceEeeecCCccccHHHHHHHhhCCeE
Confidence 78999999999999999999955899999999831 1222567788889999999999999999999999999999999
Q ss_pred EEEEeCcccc-cCCCCeEEEee
Q 042820 81 RIKVPELAEE-KRRQPKVISIN 101 (120)
Q Consensus 81 ~I~lpK~~~~-~~~~~~~I~I~ 101 (120)
+|.+||..+. +....+.|.|.
T Consensus 174 ~VvvpK~~~~~~~~~v~~i~i~ 195 (196)
T KOG0710|consen 174 TVVVPKLEPLLKKPKVRQIAIS 195 (196)
T ss_pred EEEEecccccccCCccceeecc
Confidence 9999999884 13455555553
No 21
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=7.1e-16 Score=110.26 Aligned_cols=95 Identities=24% Similarity=0.424 Sum_probs=79.7
Q ss_pred CEEEEEeCCCCCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEe-CCE
Q 042820 1 HVITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLE-NGA 79 (120)
Q Consensus 1 yii~~~lPG~~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~-nGi 79 (120)
|-|.+|+..|++++|.|++.| +.|.|.|++.. .. ++.+...+ .|.|+|.||.+||++.|++++. +|+
T Consensus 74 F~V~lDV~~F~PeEl~Vk~~~-~~l~V~gkHee----r~-d~~G~v~R------~F~R~y~LP~~vdp~~V~S~LS~dGv 141 (173)
T KOG3591|consen 74 FEVNLDVHQFKPEELKVKTDD-NTLEVEGKHEE----KE-DEHGYVSR------SFVRKYLLPEDVDPTSVTSTLSSDGV 141 (173)
T ss_pred EEEEEEcccCcccceEEEeCC-CEEEEEeeecc----cc-CCCCeEEE------EEEEEecCCCCCChhheEEeeCCCce
Confidence 568999999999999999999 99999999987 22 33333332 3999999999999999999996 999
Q ss_pred EEEEEeCcccccCCCCeEEEeeeCCCCCC
Q 042820 80 LRIKVPELAEEKRRQPKVISINEEPAGNS 108 (120)
Q Consensus 80 L~I~lpK~~~~~~~~~~~I~I~~~~~~~~ 108 (120)
|+|..||....+. ..|.|+|+..+...+
T Consensus 142 LtI~ap~~~~~~~-~er~ipI~~~~~~~~ 169 (173)
T KOG3591|consen 142 LTIEAPKPPPKQD-NERSIPIEQVGPSAL 169 (173)
T ss_pred EEEEccCCCCcCc-cceEEeEeecCcccc
Confidence 9999999987732 589999999884443
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.54 E-value=5.9e-14 Score=85.51 Aligned_cols=73 Identities=44% Similarity=0.796 Sum_probs=65.0
Q ss_pred CEEEEEeCCCCCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEeCCEE
Q 042820 1 HVITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLENGAL 80 (120)
Q Consensus 1 yii~~~lPG~~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~nGiL 80 (120)
|.|.+++||+.++++.|.+.+ +.|.|+|..... .. .+...+.|.+.+.||..++++.++|.|.+|+|
T Consensus 8 v~i~i~~~~~~~~~i~v~~~~-~~l~v~~~~~~~----~~--------~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l 74 (80)
T cd00298 8 VVVTVDLPGVKKEDIKVEVED-NVLTISGKREEE----EE--------RERSYGEFERSFELPEDVDPEKSKASLENGVL 74 (80)
T ss_pred EEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcCC----Cc--------ceEeeeeEEEEEECCCCcCHHHCEEEEECCEE
Confidence 679999999999999999999 999999998872 11 34455679999999999999999999999999
Q ss_pred EEEEeC
Q 042820 81 RIKVPE 86 (120)
Q Consensus 81 ~I~lpK 86 (120)
+|.+||
T Consensus 75 ~i~l~K 80 (80)
T cd00298 75 EITLPK 80 (80)
T ss_pred EEEEcC
Confidence 999997
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.28 E-value=3.4e-11 Score=74.84 Aligned_cols=64 Identities=19% Similarity=0.244 Sum_probs=57.7
Q ss_pred CEEEEEeCCCCCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEeCCEE
Q 042820 1 HVITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLENGAL 80 (120)
Q Consensus 1 yii~~~lPG~~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~nGiL 80 (120)
+.|.+++||+++++++|.+.+ +.|.|++ .. |.+.+.||..||++..+|.+.+|.|
T Consensus 8 v~i~i~~p~v~~~~v~v~~~~-~~l~i~~--~~----------------------~~~~~~l~~~I~~e~~~~~~~~~~l 62 (78)
T cd06469 8 VKISVPLKGVKTSKVDIFCSD-LYLKVNF--PP----------------------YLFELDLAAPIDDEKSSAKIGNGVL 62 (78)
T ss_pred EEEEEEeCCCccccceEEEec-CEEEEcC--CC----------------------EEEEEeCcccccccccEEEEeCCEE
Confidence 368899999999999999999 8999876 11 7888999999999999999999999
Q ss_pred EEEEeCccc
Q 042820 81 RIKVPELAE 89 (120)
Q Consensus 81 ~I~lpK~~~ 89 (120)
.|+|+|..+
T Consensus 63 ~i~L~K~~~ 71 (78)
T cd06469 63 VFTLVKKEP 71 (78)
T ss_pred EEEEEeCCC
Confidence 999999754
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=98.93 E-value=1.2e-08 Score=63.07 Aligned_cols=68 Identities=21% Similarity=0.187 Sum_probs=59.2
Q ss_pred EEEEEeCCCCCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEeCCEEE
Q 042820 2 VITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLENGALR 81 (120)
Q Consensus 2 ii~~~lPG~~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~nGiL~ 81 (120)
.|.+.+||..++++.|.+.+ +.|+|++.... .+.|.+.+.|+..|+++...+++.+|.|.
T Consensus 9 ~i~v~~~~~~~~~~~v~~~~-~~l~i~~~~~~-------------------~~~~~~~~~L~~~I~~~~s~~~~~~~~l~ 68 (84)
T cd06463 9 TITIPLKDVTKKDVKVEFTP-KSLTVSVKGGG-------------------GKEYLLEGELFGPIDPEESKWTVEDRKIE 68 (84)
T ss_pred EEEEEcCCCCccceEEEEec-CEEEEEeeCCC-------------------CCceEEeeEccCccchhhcEEEEeCCEEE
Confidence 68899999999999999999 99999976431 01267788999999999999999999999
Q ss_pred EEEeCccc
Q 042820 82 IKVPELAE 89 (120)
Q Consensus 82 I~lpK~~~ 89 (120)
|+|+|..+
T Consensus 69 i~L~K~~~ 76 (84)
T cd06463 69 ITLKKKEP 76 (84)
T ss_pred EEEEECCC
Confidence 99999865
No 25
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=98.83 E-value=2.7e-08 Score=71.13 Aligned_cols=66 Identities=20% Similarity=0.401 Sum_probs=52.1
Q ss_pred EEEEEeCCCCCCC-eEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEeCCEE
Q 042820 2 VITLDSLGMKKDE-VKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLENGAL 80 (120)
Q Consensus 2 ii~~~lPG~~~ed-i~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~nGiL 80 (120)
+|.++|||+++++ |+|.+.. +.+.|...... .|.+++.||.. +++.++|.|+||||
T Consensus 105 ~VvAdLPGVs~dd~idV~l~~-d~~~L~i~~~~---------------------~~~krv~L~~~-~~e~~~~t~nNgIL 161 (177)
T PF05455_consen 105 VVVADLPGVSDDDAIDVTLDD-DEGALTIRVGE---------------------KYLKRVALPWP-DPEITSATFNNGIL 161 (177)
T ss_pred EEEEeCCCCCcccceeeEeec-CCceEEEecCC---------------------ceEeeEecCCC-ccceeeEEEeCceE
Confidence 6889999999888 9999997 55555443333 14567899966 68899999999999
Q ss_pred EEEEeCcccc
Q 042820 81 RIKVPELAEE 90 (120)
Q Consensus 81 ~I~lpK~~~~ 90 (120)
.|+|-+....
T Consensus 162 EIri~~~~~~ 171 (177)
T PF05455_consen 162 EIRIRRTEES 171 (177)
T ss_pred EEEEeecCCC
Confidence 9999887654
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.47 E-value=1e-06 Score=55.03 Aligned_cols=68 Identities=19% Similarity=0.253 Sum_probs=57.4
Q ss_pred EEEEEeCCCCCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEeCCEEE
Q 042820 2 VITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLENGALR 81 (120)
Q Consensus 2 ii~~~lPG~~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~nGiL~ 81 (120)
.|.+.+||+.++++.|.+.+ +.|.|++.... + +.|...+.|...|+++..++.+.+|.|.
T Consensus 10 ~i~v~~~~~~~~~v~v~~~~-~~l~i~~~~~~---------~----------~~~~~~~~L~~~I~~~~s~~~~~~~~ve 69 (84)
T cd06466 10 TVTIYAKNVDKEDVKVEFNE-QSLSVSIILPG---------G----------SEYQLELDLFGPIDPEQSKVSVLPTKVE 69 (84)
T ss_pred EEEEEECCCCHHHCEEEEec-CEEEEEEECCC---------C----------CeEEEecccccccCchhcEEEEeCeEEE
Confidence 57889999999999999999 99999865321 0 1266678999999999999999999999
Q ss_pred EEEeCccc
Q 042820 82 IKVPELAE 89 (120)
Q Consensus 82 I~lpK~~~ 89 (120)
|+|.|..+
T Consensus 70 i~L~K~~~ 77 (84)
T cd06466 70 ITLKKAEP 77 (84)
T ss_pred EEEEcCCC
Confidence 99999764
No 27
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=98.31 E-value=3e-06 Score=65.27 Aligned_cols=61 Identities=20% Similarity=0.466 Sum_probs=53.7
Q ss_pred EEEEEeCCC-CCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEe--CC
Q 042820 2 VITLDSLGM-KKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLE--NG 78 (120)
Q Consensus 2 ii~~~lPG~-~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~--nG 78 (120)
+|.++|||+ +..+|+|.+.+ ..|.|...... |...+.||..||.+..+|.|. .+
T Consensus 264 vv~i~LP~~~s~~~i~LdV~~-~~l~l~~~~~~----------------------y~L~l~LP~~V~~~~~~Akf~~~~~ 320 (328)
T PF08190_consen 264 VVEIELPGVESASDIDLDVSE-DRLSLSSPKPK----------------------YRLDLPLPYPVDEDNGKAKFDKKTK 320 (328)
T ss_pred EEEEECCCcCccceeEEEEeC-CEEEEEeCCCc----------------------eEEEccCCCcccCCCceEEEccCCC
Confidence 689999999 89999999999 99998844432 666799999999999999996 69
Q ss_pred EEEEEEe
Q 042820 79 ALRIKVP 85 (120)
Q Consensus 79 iL~I~lp 85 (120)
+|+|+||
T Consensus 321 ~L~vtlp 327 (328)
T PF08190_consen 321 TLTVTLP 327 (328)
T ss_pred EEEEEEE
Confidence 9999998
No 28
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=97.71 E-value=0.00093 Score=40.50 Aligned_cols=65 Identities=12% Similarity=0.221 Sum_probs=51.2
Q ss_pred EEEEEeCCC--CCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEeCCE
Q 042820 2 VITLDSLGM--KKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLENGA 79 (120)
Q Consensus 2 ii~~~lPG~--~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~nGi 79 (120)
.|.+.+++. +++++.|.+.+ +.|.|+..... . . .|...+.|...|+++..+..+.++.
T Consensus 13 ~v~i~~~~~~~~~~dv~v~~~~-~~l~v~~~~~~--------~-~----------~~~~~~~L~~~I~~~~s~~~~~~~~ 72 (79)
T PF04969_consen 13 TVTIPVKPVDISKEDVKVDFTD-TSLSVSIKSGD--------G-K----------EYLLEGELFGEIDPDESTWKVKDNK 72 (79)
T ss_dssp EEEEE-TTTTSSGGGEEEEEET-TEEEEEEEETT--------S-C----------EEEEEEEBSS-BECCCEEEEEETTE
T ss_pred EEEEEEcCCCCChHHeEEEEEe-eEEEEEEEccC--------C-c----------eEEEEEEEeeeEcchhcEEEEECCE
Confidence 467888665 59999999999 99999955443 1 1 1556778999999999999999999
Q ss_pred EEEEEeC
Q 042820 80 LRIKVPE 86 (120)
Q Consensus 80 L~I~lpK 86 (120)
|.|+|.|
T Consensus 73 i~i~L~K 79 (79)
T PF04969_consen 73 IEITLKK 79 (79)
T ss_dssp EEEEEEB
T ss_pred EEEEEEC
Confidence 9999986
No 29
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.46 E-value=0.00097 Score=41.53 Aligned_cols=65 Identities=22% Similarity=0.249 Sum_probs=50.9
Q ss_pred EEEEEeC-CCCCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEeC-CE
Q 042820 2 VITLDSL-GMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLEN-GA 79 (120)
Q Consensus 2 ii~~~lP-G~~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~n-Gi 79 (120)
.|.+.+| |++++|+.+.+.+ +.|.|+..... +.-...|...||++.....+.+ ..
T Consensus 11 ~i~i~~~~~~~~~dv~v~~~~-~~l~v~~~~~~----------------------~~l~~~L~~~I~~~~s~w~~~~~~~ 67 (85)
T cd06467 11 TVTIPLPEGTKSKDVKVEITP-KHLKVGVKGGE----------------------PLLDGELYAKVKVDESTWTLEDGKL 67 (85)
T ss_pred EEEEECCCCCcceeEEEEEEc-CEEEEEECCCC----------------------ceEcCcccCceeEcCCEEEEeCCCE
Confidence 4677786 7899999999999 99998853111 1112358889999999999999 99
Q ss_pred EEEEEeCccc
Q 042820 80 LRIKVPELAE 89 (120)
Q Consensus 80 L~I~lpK~~~ 89 (120)
|.|+|+|..+
T Consensus 68 v~i~L~K~~~ 77 (85)
T cd06467 68 LEITLEKRNE 77 (85)
T ss_pred EEEEEEECCC
Confidence 9999999865
No 30
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=97.41 E-value=0.0017 Score=40.60 Aligned_cols=68 Identities=19% Similarity=0.260 Sum_probs=55.0
Q ss_pred EEEEEeCCCCCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEeCCEEE
Q 042820 2 VITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLENGALR 81 (120)
Q Consensus 2 ii~~~lPG~~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~nGiL~ 81 (120)
.|.+.++|+.++++.|.+.+ +.|.+++.... +.. |.-.+.|...|+++..+.....+-+.
T Consensus 10 ~iti~~k~~~~~~~~v~~~~-~~l~~~~~~~~---------~~~----------y~~~~~L~~~I~p~~s~~~v~~~kie 69 (84)
T cd06489 10 VITILIKNVKPEDVSVEFEK-RELSATVKLPS---------GND----------YSLKLHLLHPIVPEQSSYKILSTKIE 69 (84)
T ss_pred EEEEEECCCCHHHCEEEEeC-CEEEEEEECCC---------CCc----------EEEeeecCceecchhcEEEEeCcEEE
Confidence 47788999999999999999 99999875432 111 44457899999999888888899999
Q ss_pred EEEeCccc
Q 042820 82 IKVPELAE 89 (120)
Q Consensus 82 I~lpK~~~ 89 (120)
|.|.|..+
T Consensus 70 i~L~K~~~ 77 (84)
T cd06489 70 IKLKKTEA 77 (84)
T ss_pred EEEEcCCC
Confidence 99999753
No 31
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=97.35 E-value=0.0028 Score=41.61 Aligned_cols=66 Identities=14% Similarity=0.193 Sum_probs=53.8
Q ss_pred EEEEEeCCCCCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEeCCEEE
Q 042820 2 VITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLENGALR 81 (120)
Q Consensus 2 ii~~~lPG~~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~nGiL~ 81 (120)
.|.+.+||+ +++.|.+.. +.|.|++.... .+.. |...+.|...|+++..+..+.++.|.
T Consensus 13 ~i~i~~~~~--~~~~V~~~~-~~l~v~~~~~~--------~~~~----------y~~~~~L~~~I~pe~s~~~v~~~kve 71 (108)
T cd06465 13 YLTIELPDA--KDPKIKLEP-TSLSFKAKGGG--------GGKK----------YEFDLEFYKEIDPEESKYKVTGRQIE 71 (108)
T ss_pred EEEEEeCCC--CCcEEEEEC-CEEEEEEEcCC--------CCee----------EEEEeEhhhhccccccEEEecCCeEE
Confidence 478899998 889999999 99999974321 1111 44567899999999999999999999
Q ss_pred EEEeCcc
Q 042820 82 IKVPELA 88 (120)
Q Consensus 82 I~lpK~~ 88 (120)
|+|.|..
T Consensus 72 I~L~K~~ 78 (108)
T cd06465 72 FVLRKKE 78 (108)
T ss_pred EEEEECC
Confidence 9999976
No 32
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.18 E-value=0.0044 Score=38.98 Aligned_cols=65 Identities=11% Similarity=0.165 Sum_probs=50.0
Q ss_pred EEEEEeC-CCCCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEeCC-E
Q 042820 2 VITLDSL-GMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLENG-A 79 (120)
Q Consensus 2 ii~~~lP-G~~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~nG-i 79 (120)
.|.+.+| |++++|++|.+.. +.|.|... . +.. | ..-.|...|+++.-.-.+++| .
T Consensus 11 ~v~i~~p~~~~~~dv~v~~~~-~~l~v~~~--~---------~~~----------~-~~g~L~~~I~~d~Stw~i~~~~~ 67 (85)
T cd06493 11 TLTIRLPEDTTKEDIRIKFLP-DHISIALK--D---------QAP----------L-LEGKLYSSIDHESSTWIIKENKS 67 (85)
T ss_pred EEEEECCCCCChhhEEEEEec-CEEEEEeC--C---------CCe----------E-EeCcccCcccccCcEEEEeCCCE
Confidence 4677885 9999999999999 99988642 2 000 1 133688899999999998877 7
Q ss_pred EEEEEeCccc
Q 042820 80 LRIKVPELAE 89 (120)
Q Consensus 80 L~I~lpK~~~ 89 (120)
|.|.|.|..+
T Consensus 68 l~i~L~K~~~ 77 (85)
T cd06493 68 LEVSLIKKDE 77 (85)
T ss_pred EEEEEEECCC
Confidence 9999999764
No 33
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=96.85 E-value=0.018 Score=36.34 Aligned_cols=68 Identities=13% Similarity=0.281 Sum_probs=53.2
Q ss_pred EEEEEeCCCCC---CCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEE-ECCCCccccceeEEEeC
Q 042820 2 VITLDSLGMKK---DEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQF-RMPMSANLEHVKAHLEN 77 (120)
Q Consensus 2 ii~~~lPG~~~---edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~-~lP~~vd~~~i~A~~~n 77 (120)
.|.+.+|+..+ ++++|.+.. +.|.|++.... +.. |.-.+ +|-..|+++..+..+..
T Consensus 14 ~i~i~~~~~~~~~~~~v~v~~~~-~~l~v~~~~~~---------~~~----------~~~~~~~L~~~I~~e~s~~~~~~ 73 (92)
T cd06468 14 KIYITLKGVHQLPKENIQVEFTE-RSFELKVHDLN---------GKN----------YRFTINRLLKKIDPEKSSFKVKT 73 (92)
T ss_pred EEEEEccCCCcCCcccEEEEecC-CEEEEEEECCC---------CcE----------EEEEehHhhCccCccccEEEEeC
Confidence 47788999877 999999999 99999873321 111 33334 38899999999999999
Q ss_pred CEEEEEEeCccc
Q 042820 78 GALRIKVPELAE 89 (120)
Q Consensus 78 GiL~I~lpK~~~ 89 (120)
+-+.|.|.|..+
T Consensus 74 ~ki~i~L~K~~~ 85 (92)
T cd06468 74 DRIVITLAKKKE 85 (92)
T ss_pred CEEEEEEEeCCC
Confidence 999999999864
No 34
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=96.45 E-value=0.047 Score=34.43 Aligned_cols=68 Identities=13% Similarity=0.152 Sum_probs=53.3
Q ss_pred EEEEEeCCCCCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEeCCEEE
Q 042820 2 VITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLENGALR 81 (120)
Q Consensus 2 ii~~~lPG~~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~nGiL~ 81 (120)
.|.+.+.|+.++++.+.+.+ +.|.|+..... +. .|...+.|-..|+++..+.....+-+.
T Consensus 13 ~ItI~~k~~~~~~~~v~~~~-~~l~v~~~~~~----------~~---------~y~~~l~L~~~I~~~~s~~~v~~~kve 72 (87)
T cd06488 13 VVSVYAKNSNPELSVVEANS-TVLTIHIVFEG----------NK---------EFQLDIELWGVIDVEKSSVNMLPTKVE 72 (87)
T ss_pred EEEEEECcCCccceEEEecC-CEEEEEEECCC----------Cc---------eEEEEeeccceEChhHcEEEecCcEEE
Confidence 35667789999999999988 88888643221 11 155567899999999988888999999
Q ss_pred EEEeCccc
Q 042820 82 IKVPELAE 89 (120)
Q Consensus 82 I~lpK~~~ 89 (120)
|.|.|..+
T Consensus 73 i~L~K~~~ 80 (87)
T cd06488 73 IKLRKAEP 80 (87)
T ss_pred EEEEeCCC
Confidence 99999864
No 35
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=95.63 E-value=0.12 Score=33.34 Aligned_cols=63 Identities=16% Similarity=0.210 Sum_probs=46.7
Q ss_pred EEEEeC-CCCCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEeCCE-E
Q 042820 3 ITLDSL-GMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLENGA-L 80 (120)
Q Consensus 3 i~~~lP-G~~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~nGi-L 80 (120)
|.+.+| |+++.|+.|.+.. +.|.|.- +. ..+ +. =.|...|+++...-.+++|- |
T Consensus 19 v~i~lp~~~~~kdv~V~i~~-~~l~V~~--~g----------~~~---------l~--G~L~~~I~~destWtled~k~l 74 (93)
T cd06494 19 IEVNVPPGTRAKDVKCKLGS-RDISLAV--KG----------QEV---------LK--GKLFDSVVADECTWTLEDRKLI 74 (93)
T ss_pred EEEECCCCCceeeEEEEEEc-CEEEEEE--CC----------EEE---------Ec--CcccCccCcccCEEEEECCcEE
Confidence 445555 8999999999999 9999874 11 001 11 15778899999999999775 8
Q ss_pred EEEEeCccc
Q 042820 81 RIKVPELAE 89 (120)
Q Consensus 81 ~I~lpK~~~ 89 (120)
.|.|.|...
T Consensus 75 ~I~L~K~~~ 83 (93)
T cd06494 75 RIVLTKSNR 83 (93)
T ss_pred EEEEEeCCC
Confidence 999999753
No 36
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=94.54 E-value=0.44 Score=30.15 Aligned_cols=64 Identities=13% Similarity=0.195 Sum_probs=46.5
Q ss_pred EEEEeC---CCCCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEeCC-
Q 042820 3 ITLDSL---GMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLENG- 78 (120)
Q Consensus 3 i~~~lP---G~~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~nG- 78 (120)
|.+.+| |+++.|+.|.+.. +.|.|.-.... .. +. =.|...|+++.-.-.+++|
T Consensus 12 v~v~l~~~~~~~~kdv~v~i~~-~~l~v~~~g~~------------~~--------i~--G~L~~~V~~des~Wtled~~ 68 (87)
T cd06492 12 LKVPFKVSFRLKGKDVVVDIQR-KHLKVGLKGQP------------PI--------ID--GELYNEVKVEESSWLIEDGK 68 (87)
T ss_pred EEEECCCCCCccceEEEEEEec-CEEEEEECCCc------------eE--------Ee--CcccCcccccccEEEEeCCC
Confidence 456664 3889999999999 99988532111 11 12 2567789998989999986
Q ss_pred EEEEEEeCccc
Q 042820 79 ALRIKVPELAE 89 (120)
Q Consensus 79 iL~I~lpK~~~ 89 (120)
.|.|.|-|...
T Consensus 69 ~l~i~L~K~~~ 79 (87)
T cd06492 69 VVTVNLEKINK 79 (87)
T ss_pred EEEEEEEECCC
Confidence 89999999753
No 37
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=94.21 E-value=0.59 Score=30.76 Aligned_cols=66 Identities=14% Similarity=0.136 Sum_probs=48.5
Q ss_pred EEEEEeCCCCCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEeCCEEE
Q 042820 2 VITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLENGALR 81 (120)
Q Consensus 2 ii~~~lPG~~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~nGiL~ 81 (120)
.|++.+|+ ..|++|.+.. +.|.++|... .+..+ .-.+.|=..|+++.-+.....--+.
T Consensus 14 ~ltI~v~d--~~d~~v~l~~-~~l~f~~~~~---------~g~~y----------~~~l~l~~~I~pe~Sk~~v~~r~ve 71 (106)
T cd00237 14 FIEFCVED--SKDVKVDFEK-SKLTFSCLNG---------DNVKI----------YNEIELYDRVDPNDSKHKRTDRSIL 71 (106)
T ss_pred EEEEEeCC--CCCcEEEEec-CEEEEEEECC---------CCcEE----------EEEEEeecccCcccCeEEeCCceEE
Confidence 57889998 5899999999 9999988221 11122 2346677788888777777777788
Q ss_pred EEEeCccc
Q 042820 82 IKVPELAE 89 (120)
Q Consensus 82 I~lpK~~~ 89 (120)
|.|.|..+
T Consensus 72 ~~L~K~~~ 79 (106)
T cd00237 72 CCLRKGKE 79 (106)
T ss_pred EEEEeCCC
Confidence 88998764
No 38
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=93.62 E-value=0.46 Score=37.36 Aligned_cols=68 Identities=18% Similarity=0.239 Sum_probs=54.2
Q ss_pred EEEEEeCCCCCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEeCCEEE
Q 042820 2 VITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLENGALR 81 (120)
Q Consensus 2 ii~~~lPG~~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~nGiL~ 81 (120)
.|.+.+.|+.++++.|.+.. +.|.|+..... +.. |...+.|-..|+++..+..+..--+.
T Consensus 169 ~i~i~~k~~~~~~~~v~~~~-~~l~v~~~~~~---------~~~----------y~~~~~L~~~I~p~~s~~~v~~~Kie 228 (356)
T PLN03088 169 VVTVFAKGVPAENVNVDFGE-QILSVVIEVPG---------EDA----------YHLQPRLFGKIIPDKCKYEVLSTKIE 228 (356)
T ss_pred EEEEEecCCChHHcEEEeec-CEEEEEEecCC---------Ccc----------eeecccccccccccccEEEEecceEE
Confidence 46778899999999999999 89988854332 111 44457888999999999999888999
Q ss_pred EEEeCccc
Q 042820 82 IKVPELAE 89 (120)
Q Consensus 82 I~lpK~~~ 89 (120)
|+|.|..+
T Consensus 229 i~l~K~~~ 236 (356)
T PLN03088 229 IRLAKAEP 236 (356)
T ss_pred EEEecCCC
Confidence 99999764
No 39
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=92.35 E-value=0.55 Score=34.09 Aligned_cols=68 Identities=19% Similarity=0.249 Sum_probs=51.4
Q ss_pred EEEEEeCCCCCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEeCCEEE
Q 042820 2 VITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLENGALR 81 (120)
Q Consensus 2 ii~~~lPG~~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~nGiL~ 81 (120)
+|.+-.+|+.++|++|++.. +.|.+..+... +.- |.....|-..|.++...-..----+.
T Consensus 16 vIti~~k~v~~~~v~v~~s~-~~l~~~~~~~~---------g~~----------~~l~~~L~~~I~pe~~s~k~~stKVE 75 (196)
T KOG1309|consen 16 VITIFAKNVPKEDVNVEISE-NTLSIVIQLPS---------GSE----------YNLQLKLYHEIIPEKSSFKVFSTKVE 75 (196)
T ss_pred EEEEEecCCCccceeEEeec-ceEEEEEecCC---------chh----------hhhhHHhcccccccceeeEeeeeeEE
Confidence 58899999999999999999 99988866553 111 33344577788888877777777889
Q ss_pred EEEeCccc
Q 042820 82 IKVPELAE 89 (120)
Q Consensus 82 I~lpK~~~ 89 (120)
|+|+|...
T Consensus 76 I~L~K~~~ 83 (196)
T KOG1309|consen 76 ITLAKAEI 83 (196)
T ss_pred EEeccccc
Confidence 99998543
No 40
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=90.36 E-value=3.6 Score=26.90 Aligned_cols=67 Identities=15% Similarity=0.198 Sum_probs=47.8
Q ss_pred EEEEEeC-C-CCCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEeCC-
Q 042820 2 VITLDSL-G-MKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLENG- 78 (120)
Q Consensus 2 ii~~~lP-G-~~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~nG- 78 (120)
.|.+.|| | .+..||.|.+.. +.|.|.-.... ....+ +.- .|...|+++.-.-.+++|
T Consensus 17 ~V~i~lp~~~~~~kdv~v~i~~-~~l~v~~~~~~--------~~~~~---------i~G--~L~~~V~~des~Wtled~~ 76 (102)
T cd06495 17 EVRVPVPKDVVKGRQVSVDLQS-SSIRVSVRDGG--------GEKVL---------MEG--EFTHKINTENSLWSLEPGK 76 (102)
T ss_pred EEEEECCCCCccceEEEEEEEc-CEEEEEEecCC--------CCceE---------EeC--cccCcccCccceEEEeCCC
Confidence 3677888 5 468899999999 99998753211 00111 111 477889999999999986
Q ss_pred EEEEEEeCcc
Q 042820 79 ALRIKVPELA 88 (120)
Q Consensus 79 iL~I~lpK~~ 88 (120)
.|.|+|-|..
T Consensus 77 ~l~I~L~K~~ 86 (102)
T cd06495 77 CVLLSLSKCS 86 (102)
T ss_pred EEEEEEEECC
Confidence 5899999974
No 41
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=87.37 E-value=1.7 Score=27.64 Aligned_cols=35 Identities=9% Similarity=0.178 Sum_probs=30.1
Q ss_pred eEEEEEECCCCccccceeEEEeCCEEEEEEeCcccc
Q 042820 55 KFWRQFRMPMSANLEHVKAHLENGALRIKVPELAEE 90 (120)
Q Consensus 55 ~f~r~~~lP~~vd~~~i~A~~~nGiL~I~lpK~~~~ 90 (120)
.|.-...|| .++.+.|+..+.+|.|+|+.-+....
T Consensus 9 ~~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~~~ 43 (87)
T cd06482 9 NVLASVDVC-GFEPDQVKVKVKDGKVQVSAERENRY 43 (87)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEeccc
Confidence 377788999 89999999999999999999876543
No 42
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=86.44 E-value=1.7 Score=27.38 Aligned_cols=32 Identities=19% Similarity=0.070 Sum_probs=28.5
Q ss_pred EEEEEECCCCccccceeEEEeCCEEEEEEeCcc
Q 042820 56 FWRQFRMPMSANLEHVKAHLENGALRIKVPELA 88 (120)
Q Consensus 56 f~r~~~lP~~vd~~~i~A~~~nGiL~I~lpK~~ 88 (120)
|.-.+.|| .++++.|+..+.+|.|+|+--+..
T Consensus 9 ~~v~~dlp-G~~~edI~V~v~~~~L~I~ge~~~ 40 (83)
T cd06477 9 FQILLDVV-QFRPEDIIIQVFEGWLLIKGQHGV 40 (83)
T ss_pred EEEEEEcC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 77788999 889999999999999999987654
No 43
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=86.42 E-value=1.7 Score=27.27 Aligned_cols=32 Identities=6% Similarity=0.075 Sum_probs=27.9
Q ss_pred eEEEEEECCCCccccceeEEEeCCEEEEEEeCc
Q 042820 55 KFWRQFRMPMSANLEHVKAHLENGALRIKVPEL 87 (120)
Q Consensus 55 ~f~r~~~lP~~vd~~~i~A~~~nGiL~I~lpK~ 87 (120)
.|.-.+.|| +++++.|+..+.+|.|+|+--+.
T Consensus 8 ~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 39 (83)
T cd06476 8 KYQVFLDVC-HFTPDEITVRTVDNLLEVSARHP 39 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 377788999 88899999999999999998754
No 44
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=86.20 E-value=1.8 Score=27.17 Aligned_cols=32 Identities=13% Similarity=0.089 Sum_probs=28.0
Q ss_pred eEEEEEECCCCccccceeEEEeCCEEEEEEeCc
Q 042820 55 KFWRQFRMPMSANLEHVKAHLENGALRIKVPEL 87 (120)
Q Consensus 55 ~f~r~~~lP~~vd~~~i~A~~~nGiL~I~lpK~ 87 (120)
.|.-.+.|| +++++.|+..+.+|.|+|+--+.
T Consensus 11 ~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 42 (86)
T cd06497 11 KFTIYLDVK-HFSPEDLTVKVLDDYVEIHGKHS 42 (86)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 377789999 89999999999999999998643
No 45
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=86.03 E-value=2 Score=26.71 Aligned_cols=32 Identities=9% Similarity=0.088 Sum_probs=28.3
Q ss_pred eEEEEEECCCCccccceeEEEeCCEEEEEEeCc
Q 042820 55 KFWRQFRMPMSANLEHVKAHLENGALRIKVPEL 87 (120)
Q Consensus 55 ~f~r~~~lP~~vd~~~i~A~~~nGiL~I~lpK~ 87 (120)
.|.-.+.|| +++++.|+..+.+|.|+|+.-+.
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~ 39 (83)
T cd06478 8 RFSVNLDVK-HFSPEELSVKVLGDFVEIHGKHE 39 (83)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 378889999 99999999999999999998643
No 46
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=84.58 E-value=2.9 Score=26.25 Aligned_cols=35 Identities=14% Similarity=0.254 Sum_probs=30.1
Q ss_pred eEEEEEECCCCccccceeEEEeCCEEEEEEeCcccc
Q 042820 55 KFWRQFRMPMSANLEHVKAHLENGALRIKVPELAEE 90 (120)
Q Consensus 55 ~f~r~~~lP~~vd~~~i~A~~~nGiL~I~lpK~~~~ 90 (120)
.|.-.+.|| .++.+.|+..+.++.|+|.-.+....
T Consensus 12 ~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~~~~ 46 (90)
T cd06470 12 NYRITLAVA-GFSEDDLEIEVENNQLTVTGKKADEE 46 (90)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcccc
Confidence 477889999 78999999999999999998766554
No 47
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=82.53 E-value=3.8 Score=25.54 Aligned_cols=31 Identities=10% Similarity=0.185 Sum_probs=27.8
Q ss_pred EEEEEECCCCccccceeEEEeCCEEEEEEeCc
Q 042820 56 FWRQFRMPMSANLEHVKAHLENGALRIKVPEL 87 (120)
Q Consensus 56 f~r~~~lP~~vd~~~i~A~~~nGiL~I~lpK~ 87 (120)
|.-.+.|| .++++.|+..+.+|.|+|+--+.
T Consensus 10 ~~v~~dlp-G~~pedi~V~v~~~~L~I~ger~ 40 (81)
T cd06479 10 YQFAVDVS-DFSPEDIIVTTSNNQIEVHAEKL 40 (81)
T ss_pred EEEEEECC-CCCHHHeEEEEECCEEEEEEEEe
Confidence 77789999 89999999999999999987654
No 48
>PRK10743 heat shock protein IbpA; Provisional
Probab=82.45 E-value=6.7 Score=26.91 Aligned_cols=34 Identities=6% Similarity=0.079 Sum_probs=29.6
Q ss_pred ceEEEEEECCCCccccceeEEEeCCEEEEEEeCcc
Q 042820 54 GKFWRQFRMPMSANLEHVKAHLENGALRIKVPELA 88 (120)
Q Consensus 54 g~f~r~~~lP~~vd~~~i~A~~~nGiL~I~lpK~~ 88 (120)
..|.-...|| +++.+.|+..+++|.|+|..-+..
T Consensus 45 ~~~~v~aelP-Gv~kedi~V~v~~~~LtI~ge~~~ 78 (137)
T PRK10743 45 NHYRIAIAVA-GFAESELEITAQDNLLVVKGAHAD 78 (137)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEEEEECc
Confidence 4588889999 999999999999999999986544
No 49
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=82.28 E-value=3.4 Score=25.83 Aligned_cols=31 Identities=16% Similarity=0.170 Sum_probs=27.5
Q ss_pred eEEEEEECCCCccccceeEEEeCCEEEEEEeC
Q 042820 55 KFWRQFRMPMSANLEHVKAHLENGALRIKVPE 86 (120)
Q Consensus 55 ~f~r~~~lP~~vd~~~i~A~~~nGiL~I~lpK 86 (120)
.|.-.+.|| +++++.|+..+.++.|+|.--+
T Consensus 8 ~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~ 38 (84)
T cd06498 8 KFSVNLDVK-HFSPEELKVKVLGDFIEIHGKH 38 (84)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEE
Confidence 478889998 8999999999999999999854
No 50
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=82.13 E-value=3.7 Score=25.25 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=29.9
Q ss_pred eEEEEEECCCCccccceeEEEeCCEEEEEEeCccc
Q 042820 55 KFWRQFRMPMSANLEHVKAHLENGALRIKVPELAE 89 (120)
Q Consensus 55 ~f~r~~~lP~~vd~~~i~A~~~nGiL~I~lpK~~~ 89 (120)
.|.-.+.|| ++.++.|+..+.++.|+|..-+...
T Consensus 8 ~~~v~~dlp-G~~~edI~v~v~~~~L~I~g~~~~~ 41 (83)
T cd06526 8 KFQVTLDVK-GFKPEELKVKVSDNKLVVEGKHEER 41 (83)
T ss_pred eEEEEEECC-CCCHHHcEEEEECCEEEEEEEEeee
Confidence 488899999 6999999999999999999887654
No 51
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=81.43 E-value=4.5 Score=25.27 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=28.9
Q ss_pred eEEEEEECCCCccccceeEEEeCCEEEEEEeCcc
Q 042820 55 KFWRQFRMPMSANLEHVKAHLENGALRIKVPELA 88 (120)
Q Consensus 55 ~f~r~~~lP~~vd~~~i~A~~~nGiL~I~lpK~~ 88 (120)
.|.-.+.|| .++.+.|+..+.++.|+|..-+..
T Consensus 11 ~~~i~~~lP-Gv~~edi~v~~~~~~L~I~g~~~~ 43 (93)
T cd06471 11 EYIVEADLP-GFKKEDIKLDYKDGYLTISAKRDE 43 (93)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 377789999 799999999999999999887754
No 52
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=81.12 E-value=14 Score=24.99 Aligned_cols=62 Identities=15% Similarity=0.184 Sum_probs=37.2
Q ss_pred CeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEeCCEEEEE
Q 042820 14 EVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLENGALRIK 83 (120)
Q Consensus 14 di~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~nGiL~I~ 83 (120)
.++++..+ +.|.|+...... . -...|..... ...-.-.+.||.++..+.++....+|-++|.
T Consensus 86 ~~~~~~~~-~~L~I~~~~~~~----~--~~~~~~~~~~-~~~~~i~I~lP~~~~l~~i~i~~~~G~i~i~ 147 (166)
T PF13349_consen 86 KPEISVEG-GTLTIKSKDRES----F--FFKGFNFNNS-DNKSKITIYLPKDYKLDKIDIKTSSGDITIE 147 (166)
T ss_pred EEEEEEcC-CEEEEEEecccc----c--ccceEEEccc-CCCcEEEEEECCCCceeEEEEEeccccEEEE
Confidence 46666666 777777662220 0 0112211111 2335567888988877888888888888875
No 53
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=80.60 E-value=4.4 Score=25.41 Aligned_cols=32 Identities=9% Similarity=0.126 Sum_probs=28.4
Q ss_pred eEEEEEECCCCccccceeEEEeCCEEEEEEeCc
Q 042820 55 KFWRQFRMPMSANLEHVKAHLENGALRIKVPEL 87 (120)
Q Consensus 55 ~f~r~~~lP~~vd~~~i~A~~~nGiL~I~lpK~ 87 (120)
.|.-.+.|| +++++.|+..+.++.|+|+--+.
T Consensus 11 ~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~ 42 (86)
T cd06475 11 RWKVSLDVN-HFAPEELVVKTKDGVVEITGKHE 42 (86)
T ss_pred eEEEEEECC-CCCHHHEEEEEECCEEEEEEEEC
Confidence 377889999 89999999999999999998654
No 54
>PF14913 DPCD: DPCD protein family
Probab=80.14 E-value=7.5 Score=28.41 Aligned_cols=33 Identities=15% Similarity=0.316 Sum_probs=26.5
Q ss_pred EEEEEECCC------CccccceeEEEeCCEEEEEEeCcc
Q 042820 56 FWRQFRMPM------SANLEHVKAHLENGALRIKVPELA 88 (120)
Q Consensus 56 f~r~~~lP~------~vd~~~i~A~~~nGiL~I~lpK~~ 88 (120)
|.+.|.+|+ ..+.+.++..+.|..|.|+..|-.
T Consensus 132 YyKk~~IPDl~R~~l~l~~~~ls~~h~nNTLIIsYkKP~ 170 (194)
T PF14913_consen 132 YYKKFSIPDLDRCGLPLEQSALSFAHQNNTLIISYKKPK 170 (194)
T ss_pred ceeEecCCcHHhhCCCcchhhceeeeecCeEEEEecCcH
Confidence 666799994 346778888899999999998754
No 55
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=79.69 E-value=4.7 Score=25.34 Aligned_cols=33 Identities=9% Similarity=0.122 Sum_probs=28.5
Q ss_pred EEEEEECCCCccccceeEEEeCCEEEEEEeCccc
Q 042820 56 FWRQFRMPMSANLEHVKAHLENGALRIKVPELAE 89 (120)
Q Consensus 56 f~r~~~lP~~vd~~~i~A~~~nGiL~I~lpK~~~ 89 (120)
|.-.+.|| .+.++.|+..+.++.|+|+--+...
T Consensus 9 ~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~~ 41 (87)
T cd06481 9 FSLKLDVR-GFSPEDLSVRVDGRKLVVTGKREKK 41 (87)
T ss_pred EEEEEECC-CCChHHeEEEEECCEEEEEEEEeee
Confidence 77788888 8889999999999999999876543
No 56
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=79.36 E-value=13 Score=23.26 Aligned_cols=33 Identities=3% Similarity=0.207 Sum_probs=25.3
Q ss_pred EEEEEECCCCccccceeEEEe--CCEEEEEEeCccc
Q 042820 56 FWRQFRMPMSANLEHVKAHLE--NGALRIKVPELAE 89 (120)
Q Consensus 56 f~r~~~lP~~vd~~~i~A~~~--nGiL~I~lpK~~~ 89 (120)
|...+.|-..|+++. +.++. -|-+.|.|.|..+
T Consensus 46 ~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~L~K~e~ 80 (87)
T cd06490 46 YLLHLDLSNEVQWPC-EVRISTETGKIELVLKKKEP 80 (87)
T ss_pred EEEeeeccccCCCCc-EEEEcccCceEEEEEEcCCC
Confidence 556678888888775 55554 8899999999765
No 57
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=79.18 E-value=6.7 Score=24.71 Aligned_cols=32 Identities=16% Similarity=0.307 Sum_probs=27.1
Q ss_pred eEEEEEECCCCccccceeEEEeCCEEEEEEeCc
Q 042820 55 KFWRQFRMPMSANLEHVKAHLENGALRIKVPEL 87 (120)
Q Consensus 55 ~f~r~~~lP~~vd~~~i~A~~~nGiL~I~lpK~ 87 (120)
.|.-.+.|| +++.+.|+-.+.++.|.|+.-+.
T Consensus 8 ~~~i~~~lp-G~~~edi~I~~~~~~L~I~g~~~ 39 (102)
T PF00011_consen 8 EYIIKVDLP-GFDKEDIKIKVDDNKLVISGKRK 39 (102)
T ss_dssp EEEEEEE-T-TS-GGGEEEEEETTEEEEEEEEE
T ss_pred EEEEEEECC-CCChHHEEEEEecCccceeceee
Confidence 477789999 88999999999999999998887
No 58
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=78.26 E-value=9.9 Score=26.32 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=29.2
Q ss_pred eEEEEEECCCCccccceeEEEeCCEEEEEEeCcc
Q 042820 55 KFWRQFRMPMSANLEHVKAHLENGALRIKVPELA 88 (120)
Q Consensus 55 ~f~r~~~lP~~vd~~~i~A~~~nGiL~I~lpK~~ 88 (120)
.|.-...|| +++.+.|...+++|.|+|+--+..
T Consensus 44 ~y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~~ 76 (142)
T PRK11597 44 HYRITLALA-GFRQEDLDIQLEGTRLTVKGTPEQ 76 (142)
T ss_pred EEEEEEEeC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 588889999 899999999999999999987654
No 59
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=77.51 E-value=6.4 Score=24.62 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=27.3
Q ss_pred eEEEEEECCCCccccceeEEEeCC-EEEEEEeCcc
Q 042820 55 KFWRQFRMPMSANLEHVKAHLENG-ALRIKVPELA 88 (120)
Q Consensus 55 ~f~r~~~lP~~vd~~~i~A~~~nG-iL~I~lpK~~ 88 (120)
.|.-.+.|| +++.+.|+..+.+| +|+|+--+..
T Consensus 10 ~~~i~~~lP-Gv~~edi~i~v~~~~~L~I~g~~~~ 43 (92)
T cd06472 10 AHVFKADVP-GVKKEDVKVEVEDGRVLRISGERKK 43 (92)
T ss_pred eEEEEEECC-CCChHhEEEEEeCCCEEEEEEEecc
Confidence 377789999 68999999999865 9999987643
No 60
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=76.99 E-value=5.9 Score=22.79 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=21.1
Q ss_pred CCCCCCCeEEEEecCcEEEEEEEEEc
Q 042820 8 LGMKKDEVKIEVEENKVLRVSGEKKS 33 (120)
Q Consensus 8 PG~~~edi~I~~~~~~~L~I~g~~~~ 33 (120)
++++..+|.|.+.+ +.+.++|....
T Consensus 12 ~~~~~~~i~v~v~~-g~v~L~G~v~s 36 (64)
T PF04972_consen 12 PWLPDSNISVSVEN-GVVTLSGEVPS 36 (64)
T ss_dssp -CTT-TTEEEEEEC-TEEEEEEEESS
T ss_pred cccCCCeEEEEEEC-CEEEEEeeCcH
Confidence 46788899999999 99999999976
No 61
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=72.17 E-value=12 Score=22.37 Aligned_cols=35 Identities=26% Similarity=0.386 Sum_probs=29.9
Q ss_pred eEEEEEECCCCccccceeEEEeCCEEEEEEeCcccc
Q 042820 55 KFWRQFRMPMSANLEHVKAHLENGALRIKVPELAEE 90 (120)
Q Consensus 55 ~f~r~~~lP~~vd~~~i~A~~~nGiL~I~lpK~~~~ 90 (120)
.|.-.+.|| +++.+.|+..+.++.|.|+.-+....
T Consensus 8 ~~~i~~~lp-g~~~~~i~V~v~~~~l~I~g~~~~~~ 42 (88)
T cd06464 8 AYVVEADLP-GFKKEDIKVEVEDGVLTISGEREEEE 42 (88)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEeccc
Confidence 377789999 49999999999999999998877543
No 62
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=71.58 E-value=9.9 Score=22.73 Aligned_cols=46 Identities=20% Similarity=0.395 Sum_probs=31.1
Q ss_pred CCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEeCCEEEEEEe
Q 042820 12 KDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLENGALRIKVP 85 (120)
Q Consensus 12 ~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~nGiL~I~lp 85 (120)
|+.++|++.+ +.+.+.|.... .++.||..+ .++...+++-+.+...
T Consensus 2 P~gV~v~~~~-~~i~v~G~~g~------------------------l~~~~~~~v---~v~~~~~~~~~~~~~~ 47 (77)
T PF00347_consen 2 PEGVKVTIKG-NIITVKGPKGE------------------------LSRPIPPGV---KVEIKVEDNKITVSVL 47 (77)
T ss_dssp STTCEEEEET-TEEEEESSSSE------------------------EEEEETTTE---EEEEEEETTSEEEEEE
T ss_pred CCcEEEEEeC-cEEEEECCCEe------------------------EEEECCCCe---eEEEEcCCCceEEEEC
Confidence 5678888888 88888876554 246677665 3444466777766654
No 63
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=67.95 E-value=5.5 Score=23.58 Aligned_cols=32 Identities=25% Similarity=0.266 Sum_probs=16.5
Q ss_pred cceeEEEeCCEEEEEEeCcccccCCCCeEEEeeeCC
Q 042820 69 EHVKAHLENGALRIKVPELAEEKRRQPKVISINEEP 104 (120)
Q Consensus 69 ~~i~A~~~nGiL~I~lpK~~~~~~~~~~~I~I~~~~ 104 (120)
..|+|.|+||+|.--=|-.-+ ...++.|....
T Consensus 3 ~~I~aiYe~GvlkPl~~~~L~----Eg~~V~i~I~~ 34 (60)
T PF01954_consen 3 KVIEAIYENGVLKPLEPVDLP----EGEEVKITIEE 34 (60)
T ss_dssp --EEEEEETTEEEECS---------TTEEEEEEE--
T ss_pred ceEEEEEECCEEEECCCCCCC----CCCEEEEEEec
Confidence 468999999999864332222 34555555543
No 64
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=66.09 E-value=17 Score=21.56 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=25.9
Q ss_pred CEEEEEeCC-CCCCCeEEEEecCcEEEEEEEEEc
Q 042820 1 HVITLDSLG-MKKDEVKIEVEENKVLRVSGEKKS 33 (120)
Q Consensus 1 yii~~~lPG-~~~edi~I~~~~~~~L~I~g~~~~ 33 (120)
|.+.++||+ +++++.+..+.+ +.|.|+=.+..
T Consensus 38 ~~~~~~l~~~I~~e~~~~~~~~-~~l~i~L~K~~ 70 (78)
T cd06469 38 YLFELDLAAPIDDEKSSAKIGN-GVLVFTLVKKE 70 (78)
T ss_pred EEEEEeCcccccccccEEEEeC-CEEEEEEEeCC
Confidence 567788888 689999999999 88998865544
No 65
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=64.34 E-value=18 Score=21.19 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=23.0
Q ss_pred CEEEEEeCCCCCCCeEEEEecCcEEEEEEEEE
Q 042820 1 HVITLDSLGMKKDEVKIEVEENKVLRVSGEKK 32 (120)
Q Consensus 1 yii~~~lPG~~~edi~I~~~~~~~L~I~g~~~ 32 (120)
|.|.+..||+..-.-.|.+..+....|....+
T Consensus 37 ~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L~ 68 (71)
T PF08308_consen 37 HTVTVEKPGYEPYTKTVTVKPGETTTVNVTLE 68 (71)
T ss_pred EEEEEEECCCeeEEEEEEECCCCEEEEEEEEE
Confidence 56788888888877777777646666665544
No 66
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=63.59 E-value=39 Score=24.29 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=18.5
Q ss_pred CCCeEEEEecCcEEEEEEEEEc
Q 042820 12 KDEVKIEVEENKVLRVSGEKKS 33 (120)
Q Consensus 12 ~edi~I~~~~~~~L~I~g~~~~ 33 (120)
|++++|++.+ +.++|+|.+-.
T Consensus 13 P~~V~v~i~~-~~v~VkGp~G~ 33 (180)
T PRK05518 13 PEGVTVEIEG-LVVTVKGPKGE 33 (180)
T ss_pred CCCCEEEEEC-CEEEEECCCeE
Confidence 7899999999 99999987766
No 67
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=61.68 E-value=49 Score=23.55 Aligned_cols=21 Identities=24% Similarity=0.495 Sum_probs=18.3
Q ss_pred CCCeEEEEecCcEEEEEEEEEc
Q 042820 12 KDEVKIEVEENKVLRVSGEKKS 33 (120)
Q Consensus 12 ~edi~I~~~~~~~L~I~g~~~~ 33 (120)
|++++|++.+ +.++|+|.+-.
T Consensus 7 P~~V~v~i~~-~~i~vkGp~G~ 27 (170)
T TIGR03653 7 PEGVSVTIEG-NIVTVKGPKGE 27 (170)
T ss_pred CCCCEEEEeC-CEEEEECCCeE
Confidence 6889999999 99999987765
No 68
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=61.61 E-value=44 Score=23.81 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=18.4
Q ss_pred CCCeEEEEecCcEEEEEEEEEc
Q 042820 12 KDEVKIEVEENKVLRVSGEKKS 33 (120)
Q Consensus 12 ~edi~I~~~~~~~L~I~g~~~~ 33 (120)
|++|+|++.+ +.|+|+|.+-.
T Consensus 11 P~~V~v~~~~-~~v~v~Gp~G~ 31 (175)
T TIGR03654 11 PAGVEVTIDG-NVVTVKGPKGE 31 (175)
T ss_pred CCCcEEEEeC-CEEEEEcCCeE
Confidence 7899999999 99999987776
No 69
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=60.64 E-value=34 Score=20.54 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=26.4
Q ss_pred EEEEEECCCCccccceeEEEeCCEEEEEEe
Q 042820 56 FWRQFRMPMSANLEHVKAHLENGALRIKVP 85 (120)
Q Consensus 56 f~r~~~lP~~vd~~~i~A~~~nGiL~I~lp 85 (120)
..-.|.+|..++.+.++..+.+.-|.|.+.
T Consensus 10 V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 10 VTVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 566788999999999999999999999886
No 70
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=60.03 E-value=24 Score=24.06 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=29.7
Q ss_pred eEEEEEECCCCccccceeEEEeCCEEEEEEeCcc
Q 042820 55 KFWRQFRMPMSANLEHVKAHLENGALRIKVPELA 88 (120)
Q Consensus 55 ~f~r~~~lP~~vd~~~i~A~~~nGiL~I~lpK~~ 88 (120)
.|.-.+.|| +++.+.|+-.+.++.|+|+.-+..
T Consensus 51 ~~~I~~elP-G~~kedI~I~~~~~~l~I~g~~~~ 83 (146)
T COG0071 51 EYRITAELP-GVDKEDIEITVEGNTLTIRGEREE 83 (146)
T ss_pred EEEEEEEcC-CCChHHeEEEEECCEEEEEEEecc
Confidence 477789999 899999999999999999998875
No 71
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=58.98 E-value=37 Score=24.54 Aligned_cols=60 Identities=13% Similarity=0.199 Sum_probs=41.3
Q ss_pred eCCC-CCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEeCCEEEEEEe
Q 042820 7 SLGM-KKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLENGALRIKVP 85 (120)
Q Consensus 7 lPG~-~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~nGiL~I~lp 85 (120)
.||+ +..+|.+.+.. +.|.|.-.... .+. .=.|...|+++...-.+++|.+.|.+-
T Consensus 37 p~~~~ksk~v~~~Iq~-~hI~V~~kg~~------------~il----------dG~L~~~vk~des~WtiEd~k~i~i~l 93 (179)
T KOG2265|consen 37 PPGTAKSKDVHCSIQS-KHIKVGLKGQP------------PIL----------DGELSHSVKVDESTWTIEDGKMIVILL 93 (179)
T ss_pred CCCCcccceEEEEeee-eEEEEecCCCC------------cee----------cCccccccccccceEEecCCEEEEEEe
Confidence 3577 78899999998 88887632222 111 124677888899999999997776666
Q ss_pred Cccc
Q 042820 86 ELAE 89 (120)
Q Consensus 86 K~~~ 89 (120)
++..
T Consensus 94 ~K~~ 97 (179)
T KOG2265|consen 94 KKSN 97 (179)
T ss_pred eccc
Confidence 5543
No 72
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=58.64 E-value=45 Score=23.75 Aligned_cols=21 Identities=24% Similarity=0.427 Sum_probs=18.4
Q ss_pred CCCeEEEEecCcEEEEEEEEEc
Q 042820 12 KDEVKIEVEENKVLRVSGEKKS 33 (120)
Q Consensus 12 ~edi~I~~~~~~~L~I~g~~~~ 33 (120)
|++++|++.+ +.|+|+|.+-.
T Consensus 12 P~~V~v~~~~-~~v~vkGp~G~ 32 (178)
T PRK05498 12 PAGVEVTING-NVVTVKGPKGE 32 (178)
T ss_pred CCCCEEEEEC-CEEEEECCCEE
Confidence 7899999999 99999987776
No 73
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=55.34 E-value=55 Score=23.36 Aligned_cols=21 Identities=24% Similarity=0.703 Sum_probs=18.0
Q ss_pred CCCeEEEEecCcEEEEEEEEEc
Q 042820 12 KDEVKIEVEENKVLRVSGEKKS 33 (120)
Q Consensus 12 ~edi~I~~~~~~~L~I~g~~~~ 33 (120)
|++++|++.+ +.|+|+|.+-.
T Consensus 12 P~~V~v~i~~-~~v~vkGp~G~ 32 (178)
T CHL00140 12 PDNVNVSIDD-QIIKVKGPKGT 32 (178)
T ss_pred CCCCEEEEEC-CEEEEECCCEE
Confidence 6889999998 99999987766
No 74
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=53.84 E-value=56 Score=23.71 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=18.9
Q ss_pred CCCCeEEEEecCcEEEEEEEEEc
Q 042820 11 KKDEVKIEVEENKVLRVSGEKKS 33 (120)
Q Consensus 11 ~~edi~I~~~~~~~L~I~g~~~~ 33 (120)
=|++++|++.+ +.|+|+|.+-.
T Consensus 12 IP~~V~V~i~~-~~v~VkGp~G~ 33 (190)
T PTZ00027 12 IPEGVTVTVKS-RKVTVTGKYGE 33 (190)
T ss_pred cCCCCEEEEEC-CEEEEECCCce
Confidence 37899999999 99999987765
No 75
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=52.86 E-value=33 Score=21.84 Aligned_cols=29 Identities=17% Similarity=0.355 Sum_probs=26.6
Q ss_pred EEEEEECCCCccccceeEEEeCCEEEEEE
Q 042820 56 FWRQFRMPMSANLEHVKAHLENGALRIKV 84 (120)
Q Consensus 56 f~r~~~lP~~vd~~~i~A~~~nGiL~I~l 84 (120)
..-.|+||.++..+.+...+...-|+|.+
T Consensus 17 V~v~i~lp~~~~~kdv~V~i~~~~l~V~~ 45 (93)
T cd06494 17 VFIEVNVPPGTRAKDVKCKLGSRDISLAV 45 (93)
T ss_pred EEEEEECCCCCceeeEEEEEEcCEEEEEE
Confidence 66678999999999999999999999987
No 76
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=49.95 E-value=8.5 Score=27.03 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=19.3
Q ss_pred CCCCccccceeEEEeCCEEEEEEeC
Q 042820 62 MPMSANLEHVKAHLENGALRIKVPE 86 (120)
Q Consensus 62 lP~~vd~~~i~A~~~nGiL~I~lpK 86 (120)
|.+.++.+.--+.|.||+|+|.|+-
T Consensus 65 l~e~~~~~~~Dv~y~~GVLTl~lg~ 89 (156)
T KOG3413|consen 65 LAEEVPGEGFDVDYADGVLTLKLGS 89 (156)
T ss_pred HHhhcCccccccccccceEEEEecC
Confidence 3445555677789999999999883
No 77
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=47.71 E-value=68 Score=23.24 Aligned_cols=21 Identities=19% Similarity=0.646 Sum_probs=18.5
Q ss_pred CCCeEEEEecCcEEEEEEEEEc
Q 042820 12 KDEVKIEVEENKVLRVSGEKKS 33 (120)
Q Consensus 12 ~edi~I~~~~~~~L~I~g~~~~ 33 (120)
|++++|++.+ +.|+|+|.+-.
T Consensus 12 P~~V~V~i~~-~~ItVkGpkG~ 32 (189)
T PTZ00179 12 PEDVTVSVKD-RIVTVKGKRGT 32 (189)
T ss_pred CCCCEEEEeC-CEEEEECCCcE
Confidence 7899999999 99999987766
No 78
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=45.03 E-value=36 Score=23.43 Aligned_cols=25 Identities=32% Similarity=0.540 Sum_probs=22.5
Q ss_pred CCCCCCCeEEEEecCcEEEEEEEEEc
Q 042820 8 LGMKKDEVKIEVEENKVLRVSGEKKS 33 (120)
Q Consensus 8 PG~~~edi~I~~~~~~~L~I~g~~~~ 33 (120)
.|+...+++|.+.+ ++++++|....
T Consensus 38 ~~~~~~~i~V~v~~-G~v~l~G~v~s 62 (147)
T PRK11198 38 QGLGDADVNVQVED-GKATVSGDAAS 62 (147)
T ss_pred cCCCcCCceEEEeC-CEEEEEEEeCC
Confidence 47788889999999 99999999987
No 79
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=43.85 E-value=26 Score=22.95 Aligned_cols=17 Identities=12% Similarity=0.339 Sum_probs=14.8
Q ss_pred cceeEEEeCCEEEEEEe
Q 042820 69 EHVKAHLENGALRIKVP 85 (120)
Q Consensus 69 ~~i~A~~~nGiL~I~lp 85 (120)
..+.+.+.+|||+|+++
T Consensus 28 ~d~D~e~~~gVLti~f~ 44 (105)
T cd00503 28 ADIDVETQGGVLTLTFG 44 (105)
T ss_pred cCEeeeccCCEEEEEEC
Confidence 46778889999999998
No 80
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=43.54 E-value=32 Score=22.57 Aligned_cols=18 Identities=22% Similarity=0.538 Sum_probs=15.3
Q ss_pred cceeEEEeCCEEEEEEeC
Q 042820 69 EHVKAHLENGALRIKVPE 86 (120)
Q Consensus 69 ~~i~A~~~nGiL~I~lpK 86 (120)
..+.+.+.+|+|+|.++.
T Consensus 30 ~d~d~e~~~gVLti~~~~ 47 (109)
T PF01491_consen 30 ADIDVERSGGVLTIEFPD 47 (109)
T ss_dssp STEEEEEETTEEEEEETT
T ss_pred CceEEEccCCEEEEEECC
Confidence 368899999999999953
No 81
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=41.45 E-value=22 Score=25.44 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=23.4
Q ss_pred CCCCCCeEEEEecCcEEEEEEEEEc
Q 042820 9 GMKKDEVKIEVEENKVLRVSGEKKS 33 (120)
Q Consensus 9 G~~~edi~I~~~~~~~L~I~g~~~~ 33 (120)
|++++.|.=.+..++.|+|+|.+..
T Consensus 126 ~vdp~~V~S~LS~dGvLtI~ap~~~ 150 (173)
T KOG3591|consen 126 DVDPTSVTSTLSSDGVLTIEAPKPP 150 (173)
T ss_pred CCChhheEEeeCCCceEEEEccCCC
Confidence 7999999999998899999999887
No 82
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=39.96 E-value=29 Score=22.75 Aligned_cols=17 Identities=12% Similarity=0.259 Sum_probs=14.4
Q ss_pred eeEEEeCCEEEEEEeCc
Q 042820 71 VKAHLENGALRIKVPEL 87 (120)
Q Consensus 71 i~A~~~nGiL~I~lpK~ 87 (120)
+.+.+.+|||+|+++..
T Consensus 29 ~D~e~~~gVLti~f~~~ 45 (105)
T PRK00446 29 IDCERNGGVLTLTFENG 45 (105)
T ss_pred eeeeccCCEEEEEECCC
Confidence 77888999999999853
No 83
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=39.61 E-value=28 Score=22.68 Aligned_cols=17 Identities=12% Similarity=0.335 Sum_probs=14.4
Q ss_pred ceeEEEeCCEEEEEEeC
Q 042820 70 HVKAHLENGALRIKVPE 86 (120)
Q Consensus 70 ~i~A~~~nGiL~I~lpK 86 (120)
.+.+.+.+|||+|+++.
T Consensus 26 d~D~e~~~gVLti~f~~ 42 (102)
T TIGR03421 26 DIDCERAGGVLTLTFEN 42 (102)
T ss_pred CeeeecCCCEEEEEECC
Confidence 47788889999999984
No 84
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=39.15 E-value=1.3e+02 Score=21.55 Aligned_cols=50 Identities=8% Similarity=0.161 Sum_probs=29.4
Q ss_pred CCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEE-EeeecceEEEEEECCCC
Q 042820 11 KKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHR-AERTFGKFWRQFRMPMS 65 (120)
Q Consensus 11 ~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~-~e~~~g~f~r~~~lP~~ 65 (120)
+++++.| .+ +.|+|++.+.... ......+.+.. .-..+|.|+-++++|..
T Consensus 30 ~~~nv~v--~~-g~L~l~~~~~~~~--~~~~tsg~i~S~~~f~yG~~ear~k~~~~ 80 (212)
T cd02175 30 SADNVEF--SD-GGLALTLTNDTYG--EKPYACGEYRTRGFYGYGRYEVRMKPAKG 80 (212)
T ss_pred ccccEEE--EC-CeEEEEEeCCcCC--CCccccceEEECceEEeeEEEEEEEcCCC
Confidence 3556555 47 8899998766410 01112233332 23468999999999854
No 85
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=39.12 E-value=99 Score=23.96 Aligned_cols=50 Identities=14% Similarity=0.054 Sum_probs=30.2
Q ss_pred CCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEE---EeeecceEEEEEECCCC
Q 042820 11 KKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHR---AERTFGKFWRQFRMPMS 65 (120)
Q Consensus 11 ~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~---~e~~~g~f~r~~~lP~~ 65 (120)
+++++ .+.+ +.|.|++.+.... ...-.++++.- ....+|.|+-+++||..
T Consensus 39 ~~~nv--~v~~-G~L~I~a~~~~~~--~~~ytSg~i~T~~k~~f~yG~~EaR~klp~~ 91 (295)
T cd02180 39 DPDAV--TTIN-GSLRITMDQFRNH--GLNFRSGMLQSWNKLCFTGGYIEASASLPGK 91 (295)
T ss_pred cCcCe--EecC-CeEEEEEEeecCC--CCCEEEEEEEECCcceeeCCEEEEEEECCCC
Confidence 34554 4567 8999999876410 01112233332 34568999999999963
No 86
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=38.72 E-value=18 Score=28.32 Aligned_cols=70 Identities=9% Similarity=0.050 Sum_probs=51.3
Q ss_pred EEEEEeCCCCCCCeEEEEecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEeCCEEE
Q 042820 2 VITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLENGALR 81 (120)
Q Consensus 2 ii~~~lPG~~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~nGiL~ 81 (120)
+|.+--|-+..++|++-+++ |+|.|+.+... .+-| |....+|-..|+++...-..---.+.
T Consensus 189 ~ifiy~~pv~deqVs~~~e~-NTL~I~~q~~~---------~~~~---------~~~~~~Ly~ev~P~~~s~k~fsK~~e 249 (368)
T COG5091 189 IIFIYRPPVGDEQVSPVLEG-NTLSISYQPRR---------LRLW---------NDITISLYKEVYPDIRSIKSFSKRVE 249 (368)
T ss_pred EEEEecCCCCccccceeecC-Ccceeeeeccc---------cchH---------HHhhhhhhhhcCcchhhhhhcchhhe
Confidence 35566678899999999999 99999866554 1111 45567788889888777765557888
Q ss_pred EEEeCcccc
Q 042820 82 IKVPELAEE 90 (120)
Q Consensus 82 I~lpK~~~~ 90 (120)
|+|-|....
T Consensus 250 ~~l~KV~~v 258 (368)
T COG5091 250 VHLRKVEMV 258 (368)
T ss_pred ehhhhhhhh
Confidence 888887654
No 87
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=38.19 E-value=27 Score=20.64 Aligned_cols=23 Identities=17% Similarity=0.450 Sum_probs=19.5
Q ss_pred CCCCCeEEEEecCcEEEEEEEEEc
Q 042820 10 MKKDEVKIEVEENKVLRVSGEKKS 33 (120)
Q Consensus 10 ~~~edi~I~~~~~~~L~I~g~~~~ 33 (120)
|+.+.|.+.... +.|.|+|+.=.
T Consensus 23 f~~~~I~l~t~~-g~l~I~G~~L~ 45 (66)
T PF07873_consen 23 FDDEEIRLNTKK-GKLTIKGEGLV 45 (66)
T ss_dssp EETTEEEEEETT-EEEEEEEEEEE
T ss_pred ECCCEEEEEeCC-EEEEEECceEE
Confidence 567888899888 99999998765
No 88
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=35.15 E-value=85 Score=23.38 Aligned_cols=48 Identities=15% Similarity=0.140 Sum_probs=28.4
Q ss_pred EEEecCcEEEEEEEEEccCCc--cccccCceEEE-EeeecceEEEEEECCCC
Q 042820 17 IEVEENKVLRVSGEKKSDDYY--KEGVEGEKWHR-AERTFGKFWRQFRMPMS 65 (120)
Q Consensus 17 I~~~~~~~L~I~g~~~~~~~~--~~~~~~~~~~~-~e~~~g~f~r~~~lP~~ 65 (120)
+.+.+ +.|+|++.+...... .....++.+.. ....+|.|+-+++||..
T Consensus 60 v~v~~-G~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~ 110 (258)
T cd02178 60 VSVED-GNLVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL 110 (258)
T ss_pred eEEEC-CEEEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC
Confidence 56678 899999987762100 00011122221 24567999999999953
No 89
>PRK10568 periplasmic protein; Provisional
Probab=33.71 E-value=75 Score=23.02 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=23.0
Q ss_pred eCCCCCCCeEEEEecCcEEEEEEEEEc
Q 042820 7 SLGMKKDEVKIEVEENKVLRVSGEKKS 33 (120)
Q Consensus 7 lPG~~~edi~I~~~~~~~L~I~g~~~~ 33 (120)
-++++..+|+|.+.+ +.++++|....
T Consensus 72 ~~~i~~~~I~V~v~~-G~V~L~G~V~s 97 (203)
T PRK10568 72 HDNIKSTDISVKTHQ-KVVTLSGFVES 97 (203)
T ss_pred CCCCCCCceEEEEEC-CEEEEEEEeCC
Confidence 367788899999999 99999999984
No 90
>PRK13726 conjugal transfer pilus assembly protein TraE; Provisional
Probab=33.15 E-value=99 Score=22.36 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=14.6
Q ss_pred CCCeEEEEecCcEEEEEEEEEc
Q 042820 12 KDEVKIEVEENKVLRVSGEKKS 33 (120)
Q Consensus 12 ~edi~I~~~~~~~L~I~g~~~~ 33 (120)
+..+.+.... +.+.|+|..+.
T Consensus 130 ~~~i~v~~~~-~~V~V~Gtlkt 150 (188)
T PRK13726 130 QTSVRVWPQY-GRVDIRGVLKT 150 (188)
T ss_pred eeeEEEccCC-CEEEEEEEEEE
Confidence 4556666556 78888888776
No 91
>TIGR02934 nifT_nitrog probable nitrogen fixation protein FixT. This largely uncharacterized protein family is assigned a role in nitrogen fixation by two criteria. First, its gene occurs, generally, among genes essential for expression of active nitrogenase. Second, its phylogenetic profile closely matches that of nitrogen-fixing bacteria. However, mutational studies in Klebsiella pneumoniae failed to demonstrate any phenotype for deletion or overexpression of the protein.
Probab=32.30 E-value=55 Score=19.89 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=16.8
Q ss_pred CCEEEEEEeCcccccCCCCeEEEeeeC
Q 042820 77 NGALRIKVPELAEEKRRQPKVISINEE 103 (120)
Q Consensus 77 nGiL~I~lpK~~~~~~~~~~~I~I~~~ 103 (120)
+|.|.+.+||+.-+ ...++++..
T Consensus 10 ~g~l~~YvpKKDLE----E~Vv~~e~~ 32 (67)
T TIGR02934 10 AGELSAYVPKKDLE----EVIVSVEKE 32 (67)
T ss_pred CCCEEEEEECCcch----hheeeeecC
Confidence 57899999999876 355565543
No 92
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=32.13 E-value=1.2e+02 Score=18.78 Aligned_cols=42 Identities=17% Similarity=0.330 Sum_probs=25.5
Q ss_pred cCceEEEEeeecceEEEEEECCCCccc-cceeEEEeCC-EEEEE
Q 042820 42 EGEKWHRAERTFGKFWRQFRMPMSANL-EHVKAHLENG-ALRIK 83 (120)
Q Consensus 42 ~~~~~~~~e~~~g~f~r~~~lP~~vd~-~~i~A~~~nG-iL~I~ 83 (120)
..+.|......+--|.|.|.+|+...+ ..+.-.|.+| |-.|.
T Consensus 29 ~pG~y~~~g~~i~i~~R~F~F~Dg~e~~~~~~l~f~~~~V~~i~ 72 (85)
T PF14814_consen 29 RPGEYSRSGNRIEIYTRGFDFPDGQEPARRVRLTFSGGRVSSIQ 72 (85)
T ss_dssp STTEEEEETTEEEEEE--EEETTCEE--EEEEEEEETTEEEEEE
T ss_pred CCeEEEEECCEEEEEECCCCCCCCCccCEEEEEEECCCEEEEEE
Confidence 445555555555558999999988755 5566678876 44454
No 93
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=31.37 E-value=33 Score=22.16 Aligned_cols=15 Identities=20% Similarity=0.583 Sum_probs=12.5
Q ss_pred eEEEeCCEEEEEEeC
Q 042820 72 KAHLENGALRIKVPE 86 (120)
Q Consensus 72 ~A~~~nGiL~I~lpK 86 (120)
.+.+.+|||+|+++.
T Consensus 30 D~e~~~gVLti~~~~ 44 (97)
T TIGR03422 30 DVEYSSGVLTLELPS 44 (97)
T ss_pred ccccCCCEEEEEECC
Confidence 677889999999953
No 94
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=30.14 E-value=45 Score=22.63 Aligned_cols=33 Identities=12% Similarity=0.218 Sum_probs=23.2
Q ss_pred EEEEEECCCCcccccee---EEE--eCCEEEEEEeCcc
Q 042820 56 FWRQFRMPMSANLEHVK---AHL--ENGALRIKVPELA 88 (120)
Q Consensus 56 f~r~~~lP~~vd~~~i~---A~~--~nGiL~I~lpK~~ 88 (120)
|.-...+--.+|.+.++ -.. +++.|+|+||...
T Consensus 42 ~~~~g~v~~GiDLs~i~~~~i~~d~~~~~i~I~LP~~~ 79 (157)
T PF14014_consen 42 VIYPGTVKAGIDLSKIKEEDIEVDEDGKTITITLPPPE 79 (157)
T ss_pred EEEEEEEEEEEEhHHCCcceEEEcCCCCEEEEECCCcE
Confidence 33344445567777887 566 7899999999754
No 95
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=29.52 E-value=43 Score=21.06 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=18.6
Q ss_pred CCCCCeEEEEecCcEEEEEEEEEc
Q 042820 10 MKKDEVKIEVEENKVLRVSGEKKS 33 (120)
Q Consensus 10 ~~~edi~I~~~~~~~L~I~g~~~~ 33 (120)
|+.+.|.+.... +.|.|+|+.=.
T Consensus 41 y~~~~I~l~t~~-G~l~I~G~~L~ 63 (85)
T TIGR02856 41 FSPEEVKLNSTN-GKITIEGKNFV 63 (85)
T ss_pred ECCCEEEEEcCc-eEEEEEcccEE
Confidence 567888888888 88888887765
No 96
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=29.30 E-value=3.3e+02 Score=22.92 Aligned_cols=51 Identities=20% Similarity=0.339 Sum_probs=32.7
Q ss_pred cceEEEEEECCCCccccceeEEEe---CCEEEEEEeCcccccCCCCeEEEeeeCCCC
Q 042820 53 FGKFWRQFRMPMSANLEHVKAHLE---NGALRIKVPELAEEKRRQPKVISINEEPAG 106 (120)
Q Consensus 53 ~g~f~r~~~lP~~vd~~~i~A~~~---nGiL~I~lpK~~~~~~~~~~~I~I~~~~~~ 106 (120)
.|.|..+=-.|..--.-+|...|+ ||||.|+.--+..- ...+|.|.+....
T Consensus 486 LGkFdltGipPAPRGvpqIEVtFevDangiL~VsAeDKgtg---~~~kitItNd~~r 539 (663)
T KOG0100|consen 486 LGKFDLTGIPPAPRGVPQIEVTFEVDANGILQVSAEDKGTG---KKEKITITNDKGR 539 (663)
T ss_pred cccccccCCCCCCCCCccEEEEEEEccCceEEEEeeccCCC---CcceEEEecCCCC
Confidence 466665432332222347888885 99999998766443 5678888887643
No 97
>PF05309 TraE: TraE protein; InterPro: IPR007973 This family consists of several bacterial sex pilus assembly and synthesis proteins (TraE). Conjugal transfer of plasmids from donor to recipient cells is a complex process in which a cell-to-cell contact plays a key role. Many genes encoded by self-transmissible plasmids are required for various processes of conjugation, including pilus formation, stabilisation of mating pairs, conjugative DNA metabolism, surface exclusion and regulation of transfer gene expression []. The exact function of the TraE protein is unknown.; GO: 0000746 conjugation
Probab=28.33 E-value=1.2e+02 Score=21.42 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=16.1
Q ss_pred CCCCeEEEEecCcEEEEEEEEEc
Q 042820 11 KKDEVKIEVEENKVLRVSGEKKS 33 (120)
Q Consensus 11 ~~edi~I~~~~~~~L~I~g~~~~ 33 (120)
.++++.+...+ +.+.|+|..+.
T Consensus 129 ~~~~i~~d~~~-~~V~V~G~l~t 150 (187)
T PF05309_consen 129 YPKSIEVDPET-LTVFVTGTLKT 150 (187)
T ss_pred EEeEEEEecCC-CEEEEEEEEEE
Confidence 35566666677 88888988765
No 98
>PF12080 GldM_C: GldM C-terminal domain; InterPro: IPR022719 This domain is found in bacteria at the C terminus of the GldM protein. This domain is typically between 169 to 182 amino acids in length and has two completely conserved residues (Y and N) that may be functionally important. GldM, is named for the member from Bacteriodetes Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes [].
Probab=27.37 E-value=96 Score=22.16 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=19.2
Q ss_pred EEEEeCCCCCCCeEEEEecCcEEEEE
Q 042820 3 ITLDSLGMKKDEVKIEVEENKVLRVS 28 (120)
Q Consensus 3 i~~~lPG~~~edi~I~~~~~~~L~I~ 28 (120)
|.+.+||+..+.+.++..+ +.|.=.
T Consensus 18 isIsvpgv~~~~v~~s~~g-gsl~~~ 42 (181)
T PF12080_consen 18 ISISVPGVPSNKVPASATG-GSLSKS 42 (181)
T ss_pred EEEEeCCCCccccEEEeeC-CEEEec
Confidence 6789999999999988776 554433
No 99
>PF06988 NifT: NifT/FixU protein; InterPro: IPR009727 This family consists of several NifT and FixU bacterial proteins. The function of NifT is unknown although it is thought that the protein may be involved in biosynthesis of the FeMo cofactor of nitrogenase although perturbation of nifT expression in Klebsiella pneumoniae has only a limited effect on nitrogen fixation [].; GO: 0009399 nitrogen fixation; PDB: 2JN4_A.
Probab=26.37 E-value=74 Score=19.14 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=14.9
Q ss_pred CCEEEEEEeCcccccCCCCeEEEee
Q 042820 77 NGALRIKVPELAEEKRRQPKVISIN 101 (120)
Q Consensus 77 nGiL~I~lpK~~~~~~~~~~~I~I~ 101 (120)
+|.|.+.+||+.-+ ...+.++
T Consensus 10 ~G~ls~YVpKKDLE----E~Vv~~E 30 (64)
T PF06988_consen 10 AGGLSAYVPKKDLE----EPVVSME 30 (64)
T ss_dssp S--EEEEETTTTEE----EEEEEES
T ss_pred CcCEEEEEeCCccc----cceeeee
Confidence 58999999999877 3566665
No 100
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=26.34 E-value=1.4e+02 Score=18.88 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=16.2
Q ss_pred ECCCCccccceeEEEeCC
Q 042820 61 RMPMSANLEHVKAHLENG 78 (120)
Q Consensus 61 ~lP~~vd~~~i~A~~~nG 78 (120)
.||..+|++.+..+..+|
T Consensus 30 ~Lp~~~d~~Sl~V~~~g~ 47 (104)
T PF13600_consen 30 GLPPSLDPDSLRVSGEGG 47 (104)
T ss_pred CCCcccCCCcEEEEecCC
Confidence 589999999999998876
No 101
>PF12673 DUF3794: Domain of unknown function (DUF3794); InterPro: IPR024300 This presumed domain is functionally uncharacterised. It is found in bacteria, and is approximately 90 amino acids in length.
Probab=26.08 E-value=1.5e+02 Score=17.57 Aligned_cols=45 Identities=20% Similarity=0.241 Sum_probs=28.6
Q ss_pred eEEEEecCcEEEEEEEEEccCCccccccCceEEE--EeeecceEEEEEECC
Q 042820 15 VKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHR--AERTFGKFWRQFRMP 63 (120)
Q Consensus 15 i~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~--~e~~~g~f~r~~~lP 63 (120)
.++++.+ +.|.|.|...-...+...+.+...+. .+.. |...+.+|
T Consensus 16 ~~~~v~~-~kv~v~G~l~~~ilY~~~~~~~~v~~~~~~ip---F~~~ie~~ 62 (87)
T PF12673_consen 16 TEIKVID-DKVIVEGELNVKILYVSEDDEQPVYSVEQEIP---FSQFIELP 62 (87)
T ss_pred EEEEEEC-CEEEEEEEEEEEEEEEeCCCCCCEEEEEEEee---eeEEEECC
Confidence 4556677 89999999987544433444333333 3444 88888886
No 102
>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=25.72 E-value=2e+02 Score=18.96 Aligned_cols=46 Identities=17% Similarity=0.331 Sum_probs=28.7
Q ss_pred eEEEEEECCCCc-cccceeEEEeCCEEEEEEeCcccccCCCCeEEEeeeCCCC
Q 042820 55 KFWRQFRMPMSA-NLEHVKAHLENGALRIKVPELAEEKRRQPKVISINEEPAG 106 (120)
Q Consensus 55 ~f~r~~~lP~~v-d~~~i~A~~~nGiL~I~lpK~~~~~~~~~~~I~I~~~~~~ 106 (120)
.|..-+....++ +...++-.+++-+|-...|+. ..++|.|+.++-.
T Consensus 45 tys~li~~d~dvG~l~~Vkf~W~~~~~n~~~p~~------~~~~I~Vq~Ge~~ 91 (113)
T cd01759 45 TYSAFIDVDVDVGPLTKVKFIWNNNVINITLPKV------GAEKITVQSGKDG 91 (113)
T ss_pred EEEEEEEccCCCCCEEEEEEEEeCCccCCCCCeE------EEEEEEEEeCCCc
Confidence 344445555444 445666667777776655655 4578999988733
No 103
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=25.58 E-value=66 Score=20.01 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=15.5
Q ss_pred ceeEEEeCCEEEEEEeCc
Q 042820 70 HVKAHLENGALRIKVPEL 87 (120)
Q Consensus 70 ~i~A~~~nGiL~I~lpK~ 87 (120)
.|||.|.+.++++++|..
T Consensus 2 ~vK~~~~~d~~r~~l~~~ 19 (82)
T cd06407 2 RVKATYGEEKIRFRLPPS 19 (82)
T ss_pred EEEEEeCCeEEEEEcCCC
Confidence 489999999999999953
No 104
>TIGR02892 spore_yabP sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (PubMed:11283287), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein.
Probab=25.31 E-value=65 Score=20.34 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=19.3
Q ss_pred CCCCCeEEEEecCcEEEEEEEEEc
Q 042820 10 MKKDEVKIEVEENKVLRVSGEKKS 33 (120)
Q Consensus 10 ~~~edi~I~~~~~~~L~I~g~~~~ 33 (120)
|+.+.|.+.... +.|.|+|+.=.
T Consensus 22 fd~~~I~l~T~~-G~L~I~G~~L~ 44 (85)
T TIGR02892 22 FDDEEILLETVM-GFLTIKGQELK 44 (85)
T ss_pred ECCCEEEEEeCc-EEEEEEcceeE
Confidence 578888899888 99999988765
No 105
>PF10365 DUF2436: Domain of unknown function (DUF2436); InterPro: IPR018832 Gingipains R and K are endopeptidases with specificity for arginyl and lysyl bonds, respectively. Like other cysteine peptidases, they require reducing conditions for activity. They are maximally active at approximately neutral pH. Gingipains R and K are secreted by the bacterium Porphyromonas gingivalis (Bacteroides gingivalis). The bacterium is a major pathogen in periodontal disease, and the many ways in which the activities of the gingipains may contribute to the disease processes have been reviewed []. These enzymes are also involved in the hemagglutinating activity of the organisms. This entry represents a central region found in gingipain K peptidases, active on lysyl bonds; they belong to the MEROPS peptidase family C25 (gingipain family, clan CD).
Probab=24.82 E-value=1e+02 Score=21.68 Aligned_cols=49 Identities=16% Similarity=0.293 Sum_probs=33.4
Q ss_pred ceEEEEEECCCCccccceeEEE-eCCEEEEEEeCcccc----cCCCCeEEEeeeCC
Q 042820 54 GKFWRQFRMPMSANLEHVKAHL-ENGALRIKVPELAEE----KRRQPKVISINEEP 104 (120)
Q Consensus 54 g~f~r~~~lP~~vd~~~i~A~~-~nGiL~I~lpK~~~~----~~~~~~~I~I~~~~ 104 (120)
..|+ +.+|.+.|++.-.-.+ -+|--.|.+|--.-. .++...+|=|-..+
T Consensus 75 ~~FE--YkiP~NADps~tpq~mv~dG~~~i~IPaG~YDy~I~~P~~~~kiwIaGd~ 128 (161)
T PF10365_consen 75 DPFE--YKIPANADPSTTPQNMVVDGEASIDIPAGTYDYCIAAPQPGGKIWIAGDG 128 (161)
T ss_pred ccce--EeccCCCCCccCcceEEecCceEEEecCceeEEEEecCCCCCeEEEecCC
Confidence 4566 6789999998877766 599999999974311 02234677666554
No 106
>PF08300 HCV_NS5a_1a: Hepatitis C virus non-structural 5a zinc finger domain; InterPro: IPR013192 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in the non-structural 5a protein (NS5a) in Hepatitis C virus. The molecular function of NS5a is uncertain, but it is phosphorylated when expressed in mammalian cells. It is thought to interact with the dsRNA dependent (interferon inducible) kinase PKR, P19525 from SWISSPROT [, ]. This region corresponds to the N-terminal zinc binding domain (1a) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003968 RNA-directed RNA polymerase activity, 0004252 serine-type endopeptidase activity, 0008270 zinc ion binding, 0017111 nucleoside-triphosphatase activity, 0006355 regulation of transcription, DNA-dependent, 0006915 apoptosis, 0030683 evasion by virus of host immune response, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane; PDB: 1ZH1_B 3FQM_A 3FQQ_B.
Probab=24.57 E-value=1.1e+02 Score=18.27 Aligned_cols=24 Identities=38% Similarity=0.682 Sum_probs=16.5
Q ss_pred ECCCCccccceeEEEeCCEEEEEEeCc
Q 042820 61 RMPMSANLEHVKAHLENGALRIKVPEL 87 (120)
Q Consensus 61 ~lP~~vd~~~i~A~~~nGiL~I~lpK~ 87 (120)
+=|... .|.+..+||.++|.=||.
T Consensus 23 rC~CGa---~ItGhVknG~mri~gpkt 46 (62)
T PF08300_consen 23 RCPCGA---VITGHVKNGSMRIYGPKT 46 (62)
T ss_dssp E-TTS----EEEEEEETTEEEEE--TT
T ss_pred cCCCCC---EEeEEEeCCeEEEecChh
Confidence 345555 689999999999998875
No 107
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=24.31 E-value=2.4e+02 Score=19.27 Aligned_cols=46 Identities=15% Similarity=0.298 Sum_probs=28.5
Q ss_pred EEEEecCcEEEEEEEEEccCCccccccCceEEE-EeeecceEEEEEECCCC
Q 042820 16 KIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHR-AERTFGKFWRQFRMPMS 65 (120)
Q Consensus 16 ~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~-~e~~~g~f~r~~~lP~~ 65 (120)
.|.+.+++.|+|+..+.. ......+.+.. ....+|.|+-++++|..
T Consensus 13 nv~~~~g~~L~L~~~~~~----~~~~~sg~i~s~~~~~yG~~ear~k~~~~ 59 (185)
T PF00722_consen 13 NVTVEDGGNLVLRADKEP----GKPYTSGEIQSKFSFKYGRFEARIKAPPG 59 (185)
T ss_dssp GEEEETTSEEEEEEEEEE----TEEEEEEEEEESSEBSSEEEEEEEECSCS
T ss_pred cEEEcCCCEEEEEEEecc----cCceEeCEEEEcceeECcEEEEEEEecCC
Confidence 356777239999988855 22222333332 34668999999997743
No 108
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=24.29 E-value=2.2e+02 Score=21.68 Aligned_cols=48 Identities=8% Similarity=0.201 Sum_probs=27.6
Q ss_pred EEEEecCcEEEEEEEEEccCCc----------cccccCceEEE-EeeecceEEEEEECCC
Q 042820 16 KIEVEENKVLRVSGEKKSDDYY----------KEGVEGEKWHR-AERTFGKFWRQFRMPM 64 (120)
Q Consensus 16 ~I~~~~~~~L~I~g~~~~~~~~----------~~~~~~~~~~~-~e~~~g~f~r~~~lP~ 64 (120)
.+.+.+ +.|+|++.+...... .....++.+.- ....||.|+-+++||.
T Consensus 45 Nv~v~d-G~L~i~a~~e~~~~~~~~~~~~~~~~~~ytSg~~~t~~~~~YG~~EaRik~~p 103 (269)
T cd02177 45 NVVISN-GILELTMRRNANNTTFWDQQQVPDGPTYFTSGIFKSYAKGTYGYYEARIKGAD 103 (269)
T ss_pred ceEEeC-CEEEEEEEeccCCCcccccccccCCCCCEeeEEEEecCcceeeEEEEEEECCC
Confidence 456778 999999988742100 00011122211 2346899999999864
No 109
>PF14864 Alkyl_sulf_C: Alkyl sulfatase C-terminal; PDB: 2CG2_A 2CG3_A 2CFU_A 2CFZ_A 2YHE_C.
Probab=23.17 E-value=1.9e+02 Score=18.92 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=20.6
Q ss_pred EEEEEECCCCccccceeEEEeCCEEEEEE
Q 042820 56 FWRQFRMPMSANLEHVKAHLENGALRIKV 84 (120)
Q Consensus 56 f~r~~~lP~~vd~~~i~A~~~nGiL~I~l 84 (120)
|.-.|.+|+. -+.....++||+|.++-
T Consensus 34 ~~in~~~~D~--~e~~~l~l~NgvL~~~~ 60 (125)
T PF14864_consen 34 FTINFIFTDT--GEQYTLELRNGVLNYRK 60 (125)
T ss_dssp EEEEEEETTT--TEEEEEEEETTEEEEEE
T ss_pred EEEEEEEcCC--CCeEEEEEECCEEEeec
Confidence 5566778854 35888889999999964
No 110
>PRK11023 outer membrane lipoprotein; Provisional
Probab=23.10 E-value=1.3e+02 Score=21.47 Aligned_cols=25 Identities=12% Similarity=0.268 Sum_probs=21.8
Q ss_pred CCCCC-CCeEEEEecCcEEEEEEEEEc
Q 042820 8 LGMKK-DEVKIEVEENKVLRVSGEKKS 33 (120)
Q Consensus 8 PG~~~-edi~I~~~~~~~L~I~g~~~~ 33 (120)
|+++. .+|+|.+.+ +.+.++|+...
T Consensus 62 ~~l~~~~~I~V~v~~-G~V~L~G~V~~ 87 (191)
T PRK11023 62 EQIKKEARINVTAYQ-GKVLLTGQSPN 87 (191)
T ss_pred cccCcCceEEEEEEC-CEEEEEEEeCC
Confidence 66765 589999999 99999999987
No 111
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=22.37 E-value=3.8e+02 Score=20.85 Aligned_cols=36 Identities=11% Similarity=0.152 Sum_probs=28.9
Q ss_pred eEEEEEECCCCccccceeEEEeCCEEEEEEeCcccc
Q 042820 55 KFWRQFRMPMSANLEHVKAHLENGALRIKVPELAEE 90 (120)
Q Consensus 55 ~f~r~~~lP~~vd~~~i~A~~~nGiL~I~lpK~~~~ 90 (120)
+|...+.|=.-|+++...+.+..--+.|+|+|..+-
T Consensus 261 ~fd~d~kLwgvvnve~s~v~m~~tkVEIsl~k~ep~ 296 (320)
T KOG1667|consen 261 SFDLDYKLWGVVNVEESSVVMGETKVEISLKKAEPG 296 (320)
T ss_pred eeeccceeeeeechhhceEEeecceEEEEEeccCCC
Confidence 366666676778888888988888999999998764
No 112
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=22.30 E-value=2.4e+02 Score=20.93 Aligned_cols=43 Identities=5% Similarity=0.056 Sum_probs=24.0
Q ss_pred EEEe-cCcEEEEEEEEEccCCccccccCceEEEEe---eec----ceEEEEEECCC
Q 042820 17 IEVE-ENKVLRVSGEKKSDDYYKEGVEGEKWHRAE---RTF----GKFWRQFRMPM 64 (120)
Q Consensus 17 I~~~-~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e---~~~----g~f~r~~~lP~ 64 (120)
+.+. + +.|+|++.+.. ...-.++++..+. ..+ +.|+-+++||.
T Consensus 48 ~~v~~d-G~L~I~a~~~~----~~~ytSg~i~s~~~~~~~~~gg~~~~EaRik~p~ 98 (259)
T cd02182 48 VQLSGN-GTLQITPLRDG----SGKWTSGRIETTRTDFAAPPGGKLRVEASIRLGD 98 (259)
T ss_pred EEEcCC-CeEEEEEEecC----CCCEEEEEEEECCccccccCCCcEEEEEEEECCC
Confidence 3455 6 89999988764 1222223333221 111 26888888885
No 113
>COG2880 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.21 E-value=7.9 Score=23.53 Aligned_cols=14 Identities=36% Similarity=0.518 Sum_probs=11.1
Q ss_pred cceeEEEeCCEEEE
Q 042820 69 EHVKAHLENGALRI 82 (120)
Q Consensus 69 ~~i~A~~~nGiL~I 82 (120)
.-|.|.|+||+|.=
T Consensus 5 kIIEaiYEnGVfKP 18 (67)
T COG2880 5 KIIEAIYENGVLKP 18 (67)
T ss_pred HHHHHHHhcccccc
Confidence 35778999999973
No 114
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=21.80 E-value=1.1e+02 Score=17.81 Aligned_cols=21 Identities=10% Similarity=0.243 Sum_probs=12.0
Q ss_pred CEEEEEeCCCCCCCe-EEEEec
Q 042820 1 HVITLDSLGMKKDEV-KIEVEE 21 (120)
Q Consensus 1 yii~~~lPG~~~edi-~I~~~~ 21 (120)
|.|.+..+|+.+... .|.+..
T Consensus 50 Y~l~v~~~g~~~~~~~~v~v~~ 71 (82)
T PF13620_consen 50 YTLRVSAPGYQPQTQENVTVTA 71 (82)
T ss_dssp EEEEEEBTTEE-EEEEEEEESS
T ss_pred EEEEEEECCcceEEEEEEEEeC
Confidence 556666666666665 355554
No 115
>PRK10568 periplasmic protein; Provisional
Probab=21.64 E-value=1.5e+02 Score=21.40 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.7
Q ss_pred CCCCCCCeEEEEecCcEEEEEEEEEc
Q 042820 8 LGMKKDEVKIEVEENKVLRVSGEKKS 33 (120)
Q Consensus 8 PG~~~edi~I~~~~~~~L~I~g~~~~ 33 (120)
+.++..+|+|.+.+ +.+++.|....
T Consensus 152 ~~v~~~~I~V~v~~-G~V~L~G~V~s 176 (203)
T PRK10568 152 DIVPSRKVKVETTD-GVVQLSGTVDS 176 (203)
T ss_pred CCCCcceeEEEEeC-cEEEEEEEECC
Confidence 45677899999999 99999999964
No 116
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=21.06 E-value=3e+02 Score=19.18 Aligned_cols=50 Identities=10% Similarity=0.221 Sum_probs=29.3
Q ss_pred CCCCeEEEEecCcEEEEEEEEEccCCccccccCceEE--EEeeecceEEEEEECCCC
Q 042820 11 KKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWH--RAERTFGKFWRQFRMPMS 65 (120)
Q Consensus 11 ~~edi~I~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~--~~e~~~g~f~r~~~lP~~ 65 (120)
.++++.+. +++.|+|++.+... ......+.+. +....+|.|+-++++|..
T Consensus 28 ~~~nv~~~--~~G~L~l~~~~~~~---~~~~~sg~i~s~~~~~~yG~~ear~k~~~~ 79 (210)
T cd00413 28 SPNNVYVE--NDGGLTLRTDRDQT---DGPYSSAEIDSQKNNYTYGYYEARAKLAGG 79 (210)
T ss_pred CccCEEEe--CCCeEEEEEEecCC---CCceEeEEEEeCcceEeeEEEEEEEEcCCC
Confidence 45555444 33789999887651 0111222222 234557899999999965
No 117
>TIGR02761 TraE_TIGR type IV conjugative transfer system protein TraE. TraE is a component of type IV secretion systems involved in conjugative transfer of plasmid DNA. The function of the TraE protein is unknown.
Probab=20.57 E-value=2.9e+02 Score=19.54 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=16.3
Q ss_pred CCCCeEEEEecCcEEEEEEEEEc
Q 042820 11 KKDEVKIEVEENKVLRVSGEKKS 33 (120)
Q Consensus 11 ~~edi~I~~~~~~~L~I~g~~~~ 33 (120)
.+.++.+...+ +.+.|+|..+.
T Consensus 129 ~~~~i~v~~~~-~~V~V~G~l~~ 150 (181)
T TIGR02761 129 YPKSVEWNPQE-GTVKVRGHLKR 150 (181)
T ss_pred EeeeEEEccCC-CEEEEEEEEEE
Confidence 45667777777 88888887775
No 118
>PF05258 DUF721: Protein of unknown function (DUF721); InterPro: IPR007922 This family contains several actinomycete proteins of unknown function, and related sequences from other species.
Probab=20.47 E-value=1.1e+02 Score=18.20 Aligned_cols=15 Identities=27% Similarity=0.508 Sum_probs=11.3
Q ss_pred eEEEeCCEEEEEEeC
Q 042820 72 KAHLENGALRIKVPE 86 (120)
Q Consensus 72 ~A~~~nGiL~I~lpK 86 (120)
-..+++|+|.|.+.-
T Consensus 43 ~~~i~~g~L~i~v~~ 57 (89)
T PF05258_consen 43 PVSIKDGTLVIEVDS 57 (89)
T ss_pred EEEEECCEEEEEECC
Confidence 345679999998764
No 119
>COG1965 CyaY Protein implicated in iron transport, frataxin homolog [Inorganic ion transport and metabolism]
Probab=20.43 E-value=90 Score=20.67 Aligned_cols=17 Identities=12% Similarity=0.368 Sum_probs=13.7
Q ss_pred eeEEEeCCEEEEEEeCc
Q 042820 71 VKAHLENGALRIKVPEL 87 (120)
Q Consensus 71 i~A~~~nGiL~I~lpK~ 87 (120)
+-+.+.+|||+|+++..
T Consensus 30 ~D~d~qg~VlTl~f~ng 46 (106)
T COG1965 30 IDCEIQGGVLTLTFDNG 46 (106)
T ss_pred cceecCCCEEEEEECCC
Confidence 56777899999998754
No 120
>PF14545 DBB: Dof, BCAP, and BANK (DBB) motif,
Probab=20.38 E-value=3.1e+02 Score=19.07 Aligned_cols=32 Identities=13% Similarity=0.091 Sum_probs=23.4
Q ss_pred CEEEEEeCCC---CCCCeEEEEecCcEEEEEEEEE
Q 042820 1 HVITLDSLGM---KKDEVKIEVEENKVLRVSGEKK 32 (120)
Q Consensus 1 yii~~~lPG~---~~edi~I~~~~~~~L~I~g~~~ 32 (120)
|++.+.+|.+ ..-.+.|.+.-++.+.=+...+
T Consensus 51 yt~~~~aPd~~~~pag~V~v~v~~~g~~~~~~~ik 85 (142)
T PF14545_consen 51 YTLQFKAPDFCLEPAGSVNVRVYCDGVSLGTRQIK 85 (142)
T ss_pred EEEEEECchhcCCCCceEEEEEEECCEEEEEEeEE
Confidence 7888999999 8888999988745554444433
No 121
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=20.01 E-value=3.7e+02 Score=19.82 Aligned_cols=60 Identities=12% Similarity=0.194 Sum_probs=44.2
Q ss_pred ecCcEEEEEEEEEccCCccccccCceEEEEeeecceEEEEEECCCCccccceeEEEeCCEEEEEEe
Q 042820 20 EENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANLEHVKAHLENGALRIKVP 85 (120)
Q Consensus 20 ~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lP~~vd~~~i~A~~~nGiL~I~lp 85 (120)
.+.+.++|.|.... .-..++.++.--+..|....-+...+. .-.-+.|.+..+.|.+.+-
T Consensus 121 DD~~L~vIIG~a~G-----TvS~GGnLy~~nl~tg~~~~ly~~~dk-kqQVis~e~~gd~L~Lki~ 180 (200)
T PF15525_consen 121 DDNNLAVIIGYAHG-----TVSKGGNLYKYNLNTGNLTELYEWKDK-KQQVISAEKNGDNLNLKIN 180 (200)
T ss_pred cCCcEEEEEccccc-----eEccCCeEEEEEccCCceeEeeecccc-ceeEEEEEEeCCEEEEEEE
Confidence 34467778887766 344778888888888888887877765 5567888998888877654
Done!