RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 042820
(120 letters)
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 102 bits (255), Expect = 3e-29
Identities = 48/101 (47%), Positives = 66/101 (65%), Gaps = 5/101 (4%)
Query: 1 HVITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQF 60
HV D G+KK+EVK+EVE+ VL VSGE+ + + + +KWHR ER+ GKF R+F
Sbjct: 55 HVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKE----KEDKNDKWHRVERSSGKFVRRF 110
Query: 61 RMPMSANLEHVKAHLENGALRIKVPELAEEKRRQPKVISIN 101
R+ A +E VKA LENG L + VP+ AE K+ + K I I+
Sbjct: 111 RLLEDAKVEEVKAGLENGVLTVTVPK-AEVKKPEVKAIQIS 150
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 90.2 bits (225), Expect = 3e-25
Identities = 26/89 (29%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 1 HVITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQF 60
V+ D G+ ++++++++ +L + GE+KS+ E E++ R ER +G F R+F
Sbjct: 16 FVLYADLPGIDPSQIEVQMDKG-ILSIRGERKSE----SSTETERFSRIERRYGSFHRRF 70
Query: 61 RMPMSANLEHVKAHLENGALRIKVPELAE 89
+P SA+ + + A NG L I++P+
Sbjct: 71 ALPDSADADGITAAGRNGVLEIRIPKRPA 99
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 83.2 bits (206), Expect = 1e-21
Identities = 15/100 (15%), Positives = 36/100 (36%), Gaps = 7/100 (7%)
Query: 1 HVITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQF 60
+ G+ K+++ + + L + ++ + + +R
Sbjct: 68 IKVIAWLPGVNKEDIILNAVGD-TLEIRAKRSPL---MITESERIIYSEIPEEEEIYRTI 123
Query: 61 RMPMSANLEHVKAHLENGALRIKVPELAEEKRRQPKVISI 100
++P + E+ A ENG L + +P+ K I+I
Sbjct: 124 KLPATVKEENASAKFENGVLSVILPKAESSI---KKGINI 160
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 77.3 bits (191), Expect = 9e-20
Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 9/94 (9%)
Query: 1 HVITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQF 60
V+ D G K+++K V L + E++ + + +
Sbjct: 36 LVVVADLAGFNKEKIKARVSGQNELIIEAEREITE--------PGVKYLTQRPKYVRKVI 87
Query: 61 RMPMSANLE-HVKAHLENGALRIKVPELAEEKRR 93
R+P + + + ENG L I++P +
Sbjct: 88 RLPYNVAKDAEISGKYENGVLTIRIPIAGTSVFK 121
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 55.0 bits (132), Expect = 9e-11
Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 15/111 (13%)
Query: 2 VITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFR 61
+ LD +E+K++V + + V G+ + E+ +F R++R
Sbjct: 76 SVNLDVKHFSPEELKVKVLGDV-IEVHGKHE-----------ERQDEHGFISREFHRKYR 123
Query: 62 MPMSANLEHVKAHL-ENGALRIKVPELAEEKRRQPKVISINEEPAGNSSGE 111
+P + + + L +G L + P + I I E +
Sbjct: 124 IPADVDPLTITSSLSSDGVLTVNGPRKQVSG--PERTIPITREEKPAVTAA 172
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 52.5 bits (126), Expect = 2e-10
Identities = 17/99 (17%), Positives = 35/99 (35%), Gaps = 14/99 (14%)
Query: 2 VITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFR 61
+ LD +E+ ++V + + V + ++ R +F R++R
Sbjct: 14 SVLLDVKHFSPEEISVKVVGD-HVEVHARHEERP--------DEHGFIAR---EFHRRYR 61
Query: 62 MPMSANLEHVKAHL-ENGALRIKVP-ELAEEKRRQPKVI 98
+P + V + L G L I+ A+ P
Sbjct: 62 LPPGVDPAAVTSALSPEGVLSIQATPASAQASLPSPPAA 100
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 53.3 bits (127), Expect = 1e-09
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 9/77 (11%)
Query: 9 GMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSANL 68
+VK+ + NKV V G E + + + +F++ F P +
Sbjct: 244 HFAPKDVKVWAKGNKVY-VHGVTGK--------EEKTENASHSEHREFYKAFVTPEVVDA 294
Query: 69 EHVKAHLENGALRIKVP 85
+A + +G + ++ P
Sbjct: 295 SKTQAEIVDGLMVVEAP 311
Score = 41.4 bits (96), Expect = 2e-05
Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 14/95 (14%)
Query: 2 VITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFR 61
+ + K +E+ I+ ++NK L V +K + G R
Sbjct: 115 KVYFNVKNFKAEEITIKADKNK-LVVRAQKSVACGDA---------AMSESVG---RSIP 161
Query: 62 MPMSANLEHVKAHL-ENGALRIKVPELAEEKRRQP 95
+P S + H++A + + L I+ P +
Sbjct: 162 LPPSVDRNHIQATITTDDVLVIEAPVNEPNYKAIK 196
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 49.7 bits (119), Expect = 2e-09
Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 13/86 (15%)
Query: 1 HVITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQF 60
++LD DE+ ++ ++ V ++G+ + ++ R F R++
Sbjct: 9 WRVSLDVNHFAPDELTVKTKDGVVE-ITGKHAARQ--------DEHGYISRC---FTRKY 56
Query: 61 RMPMSANLEHVKAHL-ENGALRIKVP 85
+P + V + L G L ++ P
Sbjct: 57 TLPPGVDPTQVSSSLSPEGTLTVEAP 82
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 49.5 bits (118), Expect = 4e-09
Identities = 18/103 (17%), Positives = 40/103 (38%), Gaps = 15/103 (14%)
Query: 2 VITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFR 61
VI LD +++ ++V+E+ V + G+ E+ +F R++R
Sbjct: 15 VIFLDVKHFSPEDLTVKVQEDFVE-IHGKHN-----------ERQDDHGYISREFHRRYR 62
Query: 62 MPMSANLEHVKAHL-ENGALRIKVP--ELAEEKRRQPKVISIN 101
+P + + + L +G L P + + I ++
Sbjct: 63 LPSNVDQSALSCSLSADGMLTFSGPKIPSGVDAGHSERAIPVS 105
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 48.6 bits (116), Expect = 6e-09
Identities = 16/94 (17%), Positives = 37/94 (39%), Gaps = 13/94 (13%)
Query: 2 VITLDSLGMKKDEVKIEVEENKVLRVSGEKKSDDYYKEGVEGEKWHRAERTFGKFWRQFR 61
+ LD +E+K++V + V+ V G+ + E+ +F R++R
Sbjct: 9 SVNLDVKHFSPEELKVKVLGD-VIEVHGKHE-----------ERQDEHGFISREFHRKYR 56
Query: 62 MPMSANLEHVKAHL-ENGALRIKVPELAEEKRRQ 94
+P + + + + +G L + P +
Sbjct: 57 IPADVDPLTITSSMSSDGVLTVNGPRKQVSGPER 90
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.2 bits (57), Expect = 4.0
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 61 RMPMSANLEHVKAHL 75
+ S +LE V+ HL
Sbjct: 1881 ELQKSLSLEEVEGHL 1895
>2oug_A Transcriptional activator RFAH; transcription factor, virulence,
transcription pausing, transcription elongation; 2.10A
{Escherichia coli}
Length = 162
Score = 24.4 bits (54), Expect = 9.7
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 71 VKAHLENGALRIKVPELAEEKRRQPKVISINE 102
+ HLE A+ P + EK + K +++E
Sbjct: 17 AQEHLERQAVNCLAPMITLEKIVRGKRTAVSE 48
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.129 0.363
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,807,954
Number of extensions: 101277
Number of successful extensions: 215
Number of sequences better than 10.0: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 31
Length of query: 120
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 38
Effective length of database: 4,412,271
Effective search space: 167666298
Effective search space used: 167666298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.4 bits)