BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042821
(81 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 63.9 bits (154), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 4/85 (4%)
Query: 1 AEELKGKVKTTIKYATEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYXXXXXXX---- 56
A EL VK ++ T+ + QLE ID+LQR+GL+ HFQ E + IL IY
Sbjct: 33 ASELVTLVKMELEKETDQIRQLELIDDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFP 92
Query: 57 XXXXXVYAASVEFRLLRQHGYNVSQ 81
+Y+ S+ FRLLR+HG+ V+Q
Sbjct: 93 KEERDLYSTSLAFRLLREHGFQVAQ 117
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 1 AEELKGKVKTTIKY-ATEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYXXXXXXXXXX 59
A++L+ +V+ I E L LE IDN+QRLGL Y F+++IR L
Sbjct: 46 AKKLEAEVRREINNEKAEFLTLLELIDNVQRLGLGYRFESDIRRALDRFVSSGGFDGVTK 105
Query: 60 XXVYAASVEFRLLRQHGYNVSQ 81
++A ++ FRLLRQHG+ VSQ
Sbjct: 106 TSLHATALSFRLLRQHGFEVSQ 127
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 3 ELKGKVKTTIKYATEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYXXXXX---XXXXX 59
EL +V+ +K EP+ QLE I +L+ LGL+ FQ EI+ IL IY
Sbjct: 39 ELIVQVRILLKEKMEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEK 98
Query: 60 XXVYAASVEFRLLRQHGYNVSQ 81
+Y ++ FRLLRQHG+N+SQ
Sbjct: 99 MDLYFTALGFRLLRQHGFNISQ 120
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Query: 20 DQLEQIDNLQRLGLAYHFQTEIRNILHGIYXXXXXXXXXXXXVYAASVEFRLLRQHGYNV 79
D L ID ++RLG++YHF+ EI +IL IY + ++++FRLLRQHG+N+
Sbjct: 66 DTLNLIDTIERLGISYHFEKEIDDILDQIY----NQNSNCNDLCTSALQFRLLRQHGFNI 121
Query: 80 S 80
S
Sbjct: 122 S 122
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Query: 20 DQLEQIDNLQRLGLAYHFQTEIRNILHGIYXXXXXXXXXXXXVYAASVEFRLLRQHGYNV 79
D L ID ++RLG++YHF+ EI +IL IY + ++++FRLLRQHG+N+
Sbjct: 68 DTLNLIDTIERLGISYHFEKEIDDILDQIY----NQNSNCNDLCTSALQFRLLRQHGFNI 123
Query: 80 S 80
S
Sbjct: 124 S 124
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Query: 20 DQLEQIDNLQRLGLAYHFQTEIRNILHGIYXXXXXXXXXXXXVYAASVEFRLLRQHGYNV 79
D L ID ++RLG++YHF+ EI +IL IY + ++++FRLLRQHG+N+
Sbjct: 68 DTLNLIDTIERLGISYHFEKEIDDILDQIY----NQNSNCNDLCTSALQFRLLRQHGFNI 123
Query: 80 S 80
S
Sbjct: 124 S 124
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Query: 20 DQLEQIDNLQRLGLAYHFQTEIRNILHGIYXXXXXXXXXXXXVYAASVEFRLLRQHGYNV 79
D L ID ++RLG++YHF+ EI +IL IY + ++++FRLLRQHG+N+
Sbjct: 66 DTLNLIDTIERLGISYHFEKEIDDILDQIY----NQNSNCNDLCTSALQFRLLRQHGFNI 121
Query: 80 S 80
S
Sbjct: 122 S 122
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Query: 20 DQLEQIDNLQRLGLAYHFQTEIRNILHGIYXXXXXXXXXXXXVYAASVEFRLLRQHGYNV 79
D L ID ++RLG++YHF+ EI +IL IY + ++++FRLLRQHG+N+
Sbjct: 66 DTLNLIDTIERLGISYHFEKEIDDILDQIY----NQNSNCNDLCTSALQFRLLRQHGFNI 121
Query: 80 S 80
S
Sbjct: 122 S 122
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Query: 20 DQLEQIDNLQRLGLAYHFQTEIRNILHGIYXXXXXXXXXXXXVYAASVEFRLLRQHGYNV 79
D L ID ++RLG++YHF+ EI +IL IY + ++++FRLLRQHG+N+
Sbjct: 53 DTLNLIDTIERLGISYHFEKEIDDILDQIY----NQNSNCNDLCTSALQFRLLRQHGFNI 108
Query: 80 S 80
S
Sbjct: 109 S 109
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Query: 20 DQLEQIDNLQRLGLAYHFQTEIRNILHGIYXXXXXXXXXXXXVYAASVEFRLLRQHGYNV 79
D L ID ++RLG++YHF+ EI +IL IY + ++++FRLLRQHG+N+
Sbjct: 66 DTLNLIDTIERLGISYHFEKEIDDILDQIY----NQNSNCNDLCTSALQFRLLRQHGFNI 121
Query: 80 S 80
S
Sbjct: 122 S 122
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 54.7 bits (130), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 2 EELKGKV-KTTIKYATEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYXXXXXXXXXXX 60
++LK +V K + +L ID++QRLG++YHF EI + L IY
Sbjct: 53 QQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIY---HNNNDAEN 109
Query: 61 XVYAASVEFRLLRQHGYNVS 80
+Y S+ FRLLR+HGYNVS
Sbjct: 110 DLYTTSIRFRLLREHGYNVS 129
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 20 DQLEQIDNLQRLGLAYHFQTEIRNILHGIYXXXXXXXXXXXXVYAASVEFRLLRQHGYNV 79
D L ID ++RLG++YHF+ EI IL IY + ++++FRLLRQHG+N+
Sbjct: 66 DTLNLIDIIERLGISYHFEKEIDEILDQIY----NQNSNCNDLCTSALQFRLLRQHGFNI 121
Query: 80 S 80
S
Sbjct: 122 S 122
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 20 DQLEQIDNLQRLGLAYHFQTEIRNILHGIYXXXXXXXXXXXXVYAASVEFRLLRQHGYNV 79
D L ID ++RLG++YHF+ EI IL IY + ++++FRLLRQHG+N+
Sbjct: 66 DTLNLIDIIERLGISYHFEKEIDEILDQIY----NQNSNCNDLCTSALQFRLLRQHGFNI 121
Query: 80 S 80
S
Sbjct: 122 S 122
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 50.4 bits (119), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 7 KVKTTIKYATEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYXXXXXXXXXXXXVYAAS 66
+VK ++ + + +LE ID+L+RLG++ HF+ EI IL+ Y +Y+ +
Sbjct: 72 QVKMMLQEEVDSIRRLELIDDLRRLGISCHFEREIVEILNSKY--YTNNEIDERDLYSTA 129
Query: 67 VEFRLLRQHGYNVSQ 81
+ FRLLRQ+ ++VSQ
Sbjct: 130 LRFRLLRQYDFSVSQ 144
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 14 YATEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYXXXXX------XXXXXXXVYAASV 67
Y+ + L++L +DN++ LG+ HF+ EI+ L +Y + ++
Sbjct: 242 YSIDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTAL 301
Query: 68 EFRLLRQHGYNVS 80
R LR HGYNVS
Sbjct: 302 GLRTLRMHGYNVS 314
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 18 PLDQLEQI---DNLQRLGLAYHFQTEIRNILHGIYXXXX------XXXXXXXXVYAASVE 68
P+D E I D LQRLG++ +F+ EI+ L ++ + ++
Sbjct: 242 PVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMA 301
Query: 69 FRLLRQHGYNVS 80
FRLLRQHGY VS
Sbjct: 302 FRLLRQHGYQVS 313
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 14 YATEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYXXXXX------XXXXXXXVYAASV 67
Y + L++L +DN+ RLG+ HF+ EI+ L +Y + ++
Sbjct: 294 YPVDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTAL 353
Query: 68 EFRLLRQHGYNVS 80
FRLLR H YNVS
Sbjct: 354 GFRLLRLHRYNVS 366
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 18 PLDQLEQ---IDNLQRLGLAYHFQTEIRNILHGIYXXXXX------XXXXXXXVYAASVE 68
PLD E+ +D ++RLG+ HF+ EI+ L +Y + ++
Sbjct: 267 PLDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMG 326
Query: 69 FRLLRQHGYNVS 80
R+LR HGYNVS
Sbjct: 327 LRILRLHGYNVS 338
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,789,915
Number of Sequences: 62578
Number of extensions: 44430
Number of successful extensions: 121
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85
Number of HSP's gapped (non-prelim): 18
length of query: 81
length of database: 14,973,337
effective HSP length: 50
effective length of query: 31
effective length of database: 11,844,437
effective search space: 367177547
effective search space used: 367177547
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)