Query 042821
Match_columns 81
No_of_seqs 107 out of 691
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 17:13:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042821.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042821hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ong_A 4S-limonene synthase; m 100.0 1.7E-31 5.7E-36 207.1 9.6 81 1-81 33-117 (543)
2 3m00_A Aristolochene synthase; 100.0 1.5E-31 5.1E-36 208.4 8.4 77 1-81 48-125 (550)
3 3n0f_A Isoprene synthase; terp 100.0 1.3E-31 4.5E-36 208.8 6.5 81 1-81 46-127 (555)
4 3g4d_A (+)-delta-cadinene synt 100.0 3.9E-31 1.3E-35 206.2 9.1 78 1-81 52-130 (554)
5 2j5c_A 1,8-cineole synthase; t 100.0 4.4E-31 1.5E-35 206.0 9.3 78 1-81 66-144 (569)
6 1n1b_A (+)-bornyl diphosphate 100.0 2.6E-31 8.9E-36 206.5 6.5 81 1-81 37-120 (549)
7 3pya_A ENT-copalyl diphosphate 99.9 3.7E-24 1.3E-28 171.0 8.7 80 2-81 224-314 (727)
8 3sdr_A Alpha-bisabolene syntha 99.9 1.7E-23 5.7E-28 168.8 7.8 66 16-81 296-367 (817)
9 3p5p_A Taxadiene synthase; cla 99.9 2.7E-23 9.2E-28 166.6 8.0 66 16-81 244-315 (764)
10 3s9v_A Abietadiene synthase, c 99.9 2.8E-23 9.4E-28 166.9 8.0 66 16-81 268-339 (785)
11 1pd3_A Nonstructural protein N 86.9 0.38 1.3E-05 27.0 2.0 28 4-31 21-48 (58)
12 1fi6_A EH domain protein REPS1 65.1 16 0.00055 20.5 6.2 71 4-81 7-83 (92)
13 1c07_A Protein (epidermal grow 58.2 23 0.00079 20.0 8.1 73 4-81 8-85 (95)
14 1b0n_B Protein (SINI protein); 46.3 30 0.001 19.0 3.6 29 17-48 11-39 (57)
15 3vmx_A Voltage-gated hydrogen 43.8 8 0.00027 21.0 0.9 8 70-77 39-46 (48)
16 2kng_A Protein LSR2; DNA-bindi 42.1 9.4 0.00032 21.2 1.0 10 72-81 22-31 (55)
17 1eh2_A EPS15; calcium binding, 41.8 52 0.0018 19.3 5.5 72 4-81 13-88 (106)
18 1qjt_A EH1, epidermal growth f 41.6 49 0.0017 18.9 6.7 69 6-80 11-84 (99)
19 1q08_A Zn(II)-responsive regul 41.4 38 0.0013 19.3 3.8 26 19-47 3-28 (99)
20 3a2a_A Voltage-gated hydrogen 40.0 9.1 0.00031 21.4 0.7 8 70-77 46-53 (58)
21 1iq3_A Ralbp1-interacting prot 39.0 20 0.00067 21.3 2.2 71 5-81 21-96 (110)
22 2jq6_A EH domain-containing pr 36.3 79 0.0027 19.8 5.2 71 5-81 50-124 (139)
23 2nsz_A Programmed cell death p 35.9 47 0.0016 20.4 3.8 46 1-50 3-52 (129)
24 1x5b_A Signal transducing adap 33.3 44 0.0015 21.5 3.4 21 60-80 131-151 (163)
25 3zyq_A Hepatocyte growth facto 30.9 30 0.001 23.4 2.4 21 60-80 124-144 (226)
26 2doa_A RNA polymerase II elong 29.8 90 0.0031 19.2 4.2 44 4-49 13-56 (104)
27 1y2k_A DPDE3, PDE43, CAMP-spec 28.6 22 0.00074 25.8 1.4 19 62-80 167-185 (349)
28 4h62_V Mediator of RNA polymer 28.5 37 0.0013 16.3 1.8 20 32-51 5-24 (31)
29 2ion_A PDCD4, programmed cell 28.2 73 0.0025 20.2 3.8 45 2-50 6-54 (152)
30 1vf5_F Protein PET M; photosyn 26.3 53 0.0018 16.5 2.2 16 62-77 17-32 (35)
31 1f0j_A PDE4B, phosphodiesteras 26.2 27 0.00091 25.8 1.5 19 62-80 154-172 (377)
32 3gk5_A Uncharacterized rhodane 26.2 39 0.0013 19.5 2.0 17 63-79 66-82 (108)
33 3g5j_A Putative ATP/GTP bindin 26.1 47 0.0016 19.3 2.4 17 63-79 101-117 (134)
34 2lv7_A Calcium-binding protein 25.5 99 0.0034 17.6 3.8 45 3-48 33-81 (100)
35 3brc_A Conserved protein of un 24.6 34 0.0012 22.6 1.6 15 20-34 141-155 (156)
36 2eo2_A Adult MALE hypothalamus 24.6 33 0.0011 19.9 1.4 25 19-44 29-58 (71)
37 3fia_A Intersectin-1; EH 1 dom 24.1 1.3E+02 0.0045 18.5 6.8 70 5-81 32-106 (121)
38 1nkl_A NK-lysin; saposin fold, 24.0 82 0.0028 17.5 3.1 28 24-51 10-37 (78)
39 2e5n_A RNA polymerase II elong 24.0 1.3E+02 0.0044 18.3 4.8 44 4-49 14-57 (100)
40 3v93_A Cyclic nucleotide speci 23.3 31 0.0011 25.1 1.4 20 61-80 170-189 (345)
41 3dyn_A High affinity CGMP-spec 22.9 31 0.001 25.0 1.3 20 61-80 145-164 (329)
42 1of9_A Pore-forming peptide am 22.9 71 0.0024 17.7 2.7 29 23-52 10-38 (77)
43 2our_A CAMP and CAMP-inhibited 22.9 27 0.00092 25.1 1.0 19 62-80 148-166 (331)
44 1taz_A Calcium/calmodulin-depe 22.0 30 0.001 25.4 1.1 20 61-80 152-171 (365)
45 1sn9_A BBAT, tetrameric beta-B 22.0 70 0.0024 14.7 2.0 16 34-49 6-21 (26)
46 3g4g_A DPDE3, PDE43, CAMP-spec 21.5 35 0.0012 25.7 1.4 19 62-80 233-251 (421)
47 2ahq_A Sigma-54, RNA polymeras 21.2 93 0.0032 17.8 3.0 33 2-34 19-53 (76)
48 3itu_A CGMP-dependent 3',5'-cy 21.0 37 0.0013 24.7 1.4 19 61-79 153-171 (345)
49 1s1m_A CTP synthase; CTP synth 20.3 36 0.0012 26.4 1.3 21 60-81 18-38 (545)
50 1tbf_A CGMP-specific 3',5'-cyc 20.1 46 0.0016 24.1 1.7 20 61-80 171-190 (347)
51 2r8q_A Class I phosphodiestera 20.0 62 0.0021 23.6 2.4 19 62-80 174-192 (359)
No 1
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=99.97 E-value=1.7e-31 Score=207.14 Aligned_cols=81 Identities=43% Similarity=0.718 Sum_probs=71.7
Q ss_pred ChHHHHHHHHHHHhhcChhhHHHHHHHHHHhccccchHHHHHHHHHHHhhcCCCCC---CC-CCCHHHHHHHHHHHhhCC
Q 042821 1 AEELKGKVKTTIKYATEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYNNNKDDN---WR-NKNVYAASVEFRLLRQHG 76 (81)
Q Consensus 1 ~e~LkeeVk~ml~~~~~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~---~~-~~dL~~~aL~FRLLRq~G 76 (81)
+++||++||+|+.+..++.++|+|||+||||||+|||++||+++|+.+|+.+.... .. ..|||+|||+||||||||
T Consensus 33 ~~~Lk~~V~~~~~~~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~~~~dl~~~al~FRlLR~hG 112 (543)
T 2ong_A 33 ASELVTLVKMELEKETDQIRQLELIDDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFRLLREHG 112 (543)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTGGGTTHHHHHHHHHHHHHTTTCCCSSCCCCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHhhcccccccccccCCHHHHHHHHHHHHHcC
Confidence 36899999999987678999999999999999999999999999999998764311 11 369999999999999999
Q ss_pred CCCCC
Q 042821 77 YNVSQ 81 (81)
Q Consensus 77 y~VS~ 81 (81)
|+|||
T Consensus 113 y~vs~ 117 (543)
T 2ong_A 113 FQVAQ 117 (543)
T ss_dssp CCCCG
T ss_pred CCccH
Confidence 99996
No 2
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=99.97 E-value=1.5e-31 Score=208.37 Aligned_cols=77 Identities=40% Similarity=0.755 Sum_probs=70.9
Q ss_pred ChHHHHHHHHHHHh-hcChhhHHHHHHHHHHhccccchHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHhhCCCCC
Q 042821 1 AEELKGKVKTTIKY-ATEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYNNNKDDNWRNKNVYAASVEFRLLRQHGYNV 79 (81)
Q Consensus 1 ~e~LkeeVk~ml~~-~~~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~dL~~~aL~FRLLRq~Gy~V 79 (81)
+++||++||+||.+ .+++.++|+|||+||||||+|||++||+++|+++|+.|.. . .|||+|||+|||||||||+|
T Consensus 48 ~e~Lk~eVr~~l~~~~~~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~---~-~dl~~~al~FRLLR~hGy~V 123 (550)
T 3m00_A 48 IEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSN---C-NDLCTSALQFRLLRQHGFNI 123 (550)
T ss_dssp HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHHCCC---C-SSHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHhccc---C-CCHHHHHHHHHHHHhcCCCC
Confidence 37899999999975 5789999999999999999999999999999999987653 2 79999999999999999999
Q ss_pred CC
Q 042821 80 SQ 81 (81)
Q Consensus 80 S~ 81 (81)
||
T Consensus 124 S~ 125 (550)
T 3m00_A 124 SP 125 (550)
T ss_dssp CG
T ss_pred Ch
Confidence 96
No 3
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=99.97 E-value=1.3e-31 Score=208.81 Aligned_cols=81 Identities=42% Similarity=0.655 Sum_probs=69.5
Q ss_pred ChHHHHHHHHHHHhhc-ChhhHHHHHHHHHHhccccchHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHhhCCCCC
Q 042821 1 AEELKGKVKTTIKYAT-EPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYNNNKDDNWRNKNVYAASVEFRLLRQHGYNV 79 (81)
Q Consensus 1 ~e~LkeeVk~ml~~~~-~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~dL~~~aL~FRLLRq~Gy~V 79 (81)
+++||++||+||.+.+ ++.++|+|||+||||||+|||++||+++|+.+|+......+...|||+|||+|||||||||+|
T Consensus 46 ~e~Lk~eVr~~l~~~~~~~~~~L~lID~lqRLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~DL~~~Al~FRLLR~hGy~V 125 (555)
T 3n0f_A 46 AKKLEAEVRREINNEKAEFLTLLELIDNVQRLGLGYRFESDIRRALDRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEV 125 (555)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTTCGGGSHHHHHHHHHHHHHTCHHHHHTTTCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHhcCCCc
Confidence 3789999999997666 899999999999999999999999999999999741100012269999999999999999999
Q ss_pred CC
Q 042821 80 SQ 81 (81)
Q Consensus 80 S~ 81 (81)
||
T Consensus 126 S~ 127 (555)
T 3n0f_A 126 SQ 127 (555)
T ss_dssp CG
T ss_pred Ch
Confidence 96
No 4
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=99.97 E-value=3.9e-31 Score=206.21 Aligned_cols=78 Identities=42% Similarity=0.739 Sum_probs=69.7
Q ss_pred ChHHHHHHHHHHHh-hcChhhHHHHHHHHHHhccccchHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHhhCCCCC
Q 042821 1 AEELKGKVKTTIKY-ATEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYNNNKDDNWRNKNVYAASVEFRLLRQHGYNV 79 (81)
Q Consensus 1 ~e~LkeeVk~ml~~-~~~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~dL~~~aL~FRLLRq~Gy~V 79 (81)
+++||++||+||.+ .+++.++|+|||+||||||+|||++||+++|+++|+. .. .+..|||+|||+|||||||||+|
T Consensus 52 ~e~Lk~eVr~~l~~~~~~~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~-~~--~~~~dl~~~al~FRlLR~hGy~V 128 (554)
T 3g4d_A 52 HQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHN-NN--DAENDLYTTSIRFRLLREHGYNV 128 (554)
T ss_dssp HHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHS-CC--CTTCCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhc-cC--CCCCCHHHHHHHHHHHHhcCCCC
Confidence 37899999999975 5789999999999999999999999999999999975 21 12269999999999999999999
Q ss_pred CC
Q 042821 80 SQ 81 (81)
Q Consensus 80 S~ 81 (81)
||
T Consensus 129 S~ 130 (554)
T 3g4d_A 129 SC 130 (554)
T ss_dssp CG
T ss_pred Ch
Confidence 96
No 5
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=99.97 E-value=4.4e-31 Score=206.00 Aligned_cols=78 Identities=38% Similarity=0.685 Sum_probs=70.4
Q ss_pred ChHHHHHHHHHHHhhcChhhHHHHHHHHHHhccccchHHHHHHHHHHHh-hcCCCCCCCCCCHHHHHHHHHHHhhCCCCC
Q 042821 1 AEELKGKVKTTIKYATEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIY-NNNKDDNWRNKNVYAASVEFRLLRQHGYNV 79 (81)
Q Consensus 1 ~e~LkeeVk~ml~~~~~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i~-~~~~~~~~~~~dL~~~aL~FRLLRq~Gy~V 79 (81)
+++||++||+|+.+..++.++|+|||+||||||+|||++||+++|+.+| +.+.. ...|||+|||+|||||||||+|
T Consensus 66 ~~~Lk~~Vr~~~~~~~d~~~~l~lID~lqrLGi~~hFe~EI~~~L~~i~~~~~~~---~~~Dl~~~al~FRlLR~hGy~V 142 (569)
T 2j5c_A 66 AAGMIDQVKMMLQEEVDSIRRLELIDDLRRLGISCHFEREIVEILNSKYYTNNEI---DERDLYSTALRFRLLRQYDFSV 142 (569)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTSSCCS---CTTCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHhccCc---ccCChhhhhHHhHHHHhcCCCc
Confidence 3689999999998767899999999999999999999999999999999 65332 2269999999999999999999
Q ss_pred CC
Q 042821 80 SQ 81 (81)
Q Consensus 80 S~ 81 (81)
||
T Consensus 143 s~ 144 (569)
T 2j5c_A 143 SQ 144 (569)
T ss_dssp CG
T ss_pred CH
Confidence 97
No 6
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=99.97 E-value=2.6e-31 Score=206.51 Aligned_cols=81 Identities=46% Similarity=0.690 Sum_probs=70.7
Q ss_pred ChHHHHHHHHHHHhhcChhhHHHHHHHHHHhccccchHHHHHHHHHHHhhcCCC--CCC-CCCCHHHHHHHHHHHhhCCC
Q 042821 1 AEELKGKVKTTIKYATEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYNNNKD--DNW-RNKNVYAASVEFRLLRQHGY 77 (81)
Q Consensus 1 ~e~LkeeVk~ml~~~~~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~--~~~-~~~dL~~~aL~FRLLRq~Gy 77 (81)
+++||++||+|+.+..++.++|+|||+||||||+|||++||+++|+++|+.+.. ... ...|||+|||+|||||||||
T Consensus 37 ~~~Lk~~V~~~~~~~~d~~~~l~lvD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~~~dl~~~al~FRlLR~hGy 116 (549)
T 1n1b_A 37 KAELIVQVRILLKEKMEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGF 116 (549)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCHHHHHCCCCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcccCHHHHHHhHHHHHhCCchhhhHHHHHHHHHHHHhhhccccccccccCChhhchhhhhHHHhcCC
Confidence 368999999999876789999999999999999999999999999999976421 100 12699999999999999999
Q ss_pred CCCC
Q 042821 78 NVSQ 81 (81)
Q Consensus 78 ~VS~ 81 (81)
+|||
T Consensus 117 ~Vs~ 120 (549)
T 1n1b_A 117 NISQ 120 (549)
T ss_dssp CCCG
T ss_pred CcCH
Confidence 9996
No 7
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=99.90 E-value=3.7e-24 Score=170.98 Aligned_cols=80 Identities=33% Similarity=0.491 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHhh-----cChhhHHHHHHHHHHhccccchHHHHHHHHHHHhhcCCCCC-----C-CCCCHHHHHHHHH
Q 042821 2 EELKGKVKTTIKYA-----TEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYNNNKDDN-----W-RNKNVYAASVEFR 70 (81)
Q Consensus 2 e~LkeeVk~ml~~~-----~~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~-----~-~~~dL~~~aL~FR 70 (81)
+.|+..|++..... .+++++|++||+||||||+|||++||+++|+.+|+.|...+ . ...||++|||+||
T Consensus 224 ~YL~~~v~k~~g~VP~~yP~d~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~~~~~g~~~~~~~~~~DL~~tAL~FR 303 (727)
T 3pya_A 224 EYLRNAVKRFNGGVPNVFPVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFR 303 (727)
T ss_dssp HHHHHHHHHTTTCCCSSCCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTCCTTCCCSSSSCSCCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcCcccccCCCCCCHHHHHHHHH
Confidence 45677777765321 57899999999999999999999999999999998754321 1 1259999999999
Q ss_pred HHhhCCCCCCC
Q 042821 71 LLRQHGYNVSQ 81 (81)
Q Consensus 71 LLRq~Gy~VS~ 81 (81)
|||||||+|||
T Consensus 304 LLRqhGy~VS~ 314 (727)
T 3pya_A 304 LLRQHGYQVSA 314 (727)
T ss_dssp HHHHTTCCCCG
T ss_pred HHHhCCCCCCH
Confidence 99999999996
No 8
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=99.89 E-value=1.7e-23 Score=168.75 Aligned_cols=66 Identities=35% Similarity=0.600 Sum_probs=57.7
Q ss_pred cChhhHHHHHHHHHHhccccchHHHHHHHHHHHhhcCCCCC-----CC-CCCHHHHHHHHHHHhhCCCCCCC
Q 042821 16 TEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYNNNKDDN-----WR-NKNVYAASVEFRLLRQHGYNVSQ 81 (81)
Q Consensus 16 ~~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~-----~~-~~dL~~~aL~FRLLRq~Gy~VS~ 81 (81)
.+++++|++||+||||||+|||++||+++|+.+|+.+...+ .+ ..||++|||+|||||||||+|||
T Consensus 296 ~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~ 367 (817)
T 3sdr_A 296 VDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRYNVSP 367 (817)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCG
T ss_pred CcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHHcCCCccH
Confidence 47799999999999999999999999999999998655311 11 25999999999999999999996
No 9
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=99.88 E-value=2.7e-23 Score=166.60 Aligned_cols=66 Identities=32% Similarity=0.590 Sum_probs=57.8
Q ss_pred cChhhHHHHHHHHHHhccccchHHHHHHHHHHHhhcCCCCC-----CC-CCCHHHHHHHHHHHhhCCCCCCC
Q 042821 16 TEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYNNNKDDN-----WR-NKNVYAASVEFRLLRQHGYNVSQ 81 (81)
Q Consensus 16 ~~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~-----~~-~~dL~~~aL~FRLLRq~Gy~VS~ 81 (81)
.+++++|++||+||||||+|||++||+++|+.+|+.+...+ .+ ..||++|||+|||||||||+|||
T Consensus 244 ~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~ 315 (764)
T 3p5p_A 244 IDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMHGYNVSS 315 (764)
T ss_dssp CHHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCG
T ss_pred CcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHhcCCCccH
Confidence 47799999999999999999999999999999998765311 11 25999999999999999999996
No 10
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=99.88 E-value=2.8e-23 Score=166.92 Aligned_cols=66 Identities=30% Similarity=0.581 Sum_probs=58.0
Q ss_pred cChhhHHHHHHHHHHhccccchHHHHHHHHHHHhhcCCCCC-----CC-CCCHHHHHHHHHHHhhCCCCCCC
Q 042821 16 TEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYNNNKDDN-----WR-NKNVYAASVEFRLLRQHGYNVSQ 81 (81)
Q Consensus 16 ~~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~-----~~-~~dL~~~aL~FRLLRq~Gy~VS~ 81 (81)
.+++++|++||+||||||+|||++||+++|+.+|+.|...+ .+ ..||++|||+|||||||||+|||
T Consensus 268 ~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~ 339 (785)
T 3s9v_A 268 LDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSS 339 (785)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCG
T ss_pred CcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhccccccccCCCCCHHHHHHHHHHHHhcCCCCCH
Confidence 47799999999999999999999999999999998765321 11 25999999999999999999996
No 11
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=86.91 E-value=0.38 Score=26.99 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhcChhhHHHHHHHHHHh
Q 042821 4 LKGKVKTTIKYATEPLDQLEQIDNLQRL 31 (81)
Q Consensus 4 LkeeVk~ml~~~~~~~~~L~lID~lqrL 31 (81)
|.+|||..|..+.+.++++.++.+||-|
T Consensus 21 lIeE~Rh~Lk~TensfeQItfmqalQLl 48 (58)
T 1pd3_A 21 LIEEVRHRLKITENSFEQITFMQALQLL 48 (58)
T ss_dssp HHHHHHHTCCCCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhchHHHHHHHHHHHHH
Confidence 5677777776667899999999999875
No 12
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=65.08 E-value=16 Score=20.52 Aligned_cols=71 Identities=13% Similarity=0.139 Sum_probs=40.1
Q ss_pred HHHHHHHHHHh--h--cChhhHHHHHHHHHHhccccchHHHHHHHHHHHhhcCCCCCCCCCCH--HHHHHHHHHHhhCCC
Q 042821 4 LKGKVKTTIKY--A--TEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYNNNKDDNWRNKNV--YAASVEFRLLRQHGY 77 (81)
Q Consensus 4 LkeeVk~ml~~--~--~~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~dL--~~~aL~FRLLRq~Gy 77 (81)
-+++.+..|.. . +..+..=++...+.++|++ ++|+..++..+-. +. ...-|. +..++.-.-.+|+|+
T Consensus 7 ~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~---~~~~~~i~~~~D~---d~-dG~i~~~EF~~~~~~~~~~~~g~ 79 (92)
T 1fi6_A 7 QRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLP---ILELSHIWELSDF---DK-DGALTLDEFCAAFHLVVARKNGY 79 (92)
T ss_dssp HHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSC---HHHHHHHHHHHCT---TC-SSEEEHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCC---HHHHHHHHHHHCC---CC-CCCCCHHHHHHHHHHHHHHHcCC
Confidence 35667777753 1 3345666677788899976 5677776655411 11 111122 233444444568899
Q ss_pred CCCC
Q 042821 78 NVSQ 81 (81)
Q Consensus 78 ~VS~ 81 (81)
.+++
T Consensus 80 ~lp~ 83 (92)
T 1fi6_A 80 DLPE 83 (92)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 8864
No 13
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=58.22 E-value=23 Score=20.02 Aligned_cols=73 Identities=14% Similarity=0.088 Sum_probs=40.3
Q ss_pred HHHHHHHHHHh----hcChhhHHHHHHHHHHhccccchHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHh-hCCCC
Q 042821 4 LKGKVKTTIKY----ATEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYNNNKDDNWRNKNVYAASVEFRLLR-QHGYN 78 (81)
Q Consensus 4 LkeeVk~ml~~----~~~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~dL~~~aL~FRLLR-q~Gy~ 78 (81)
-+++.+.+|.. .+..+..=++...+.++|++ ++|++.++..+-.. .+..-+..+. ..++.-.-.+ +.|+.
T Consensus 8 ~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~---~~~~~~i~~~~D~d-~dG~i~~~EF-~~~~~~~~~~~~~g~~ 82 (95)
T 1c07_A 8 EKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLP---STLLAHIWSLCDTK-DCGKLSKDQF-ALAFHLISQKLIKGID 82 (95)
T ss_dssp HHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCC---HHHHHHHHHHHCTT-CSSSEETTTH-HHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCC---HHHHHHHHHHHCCC-CCCcCCHHHH-HHHHHHHHHHHHcCCC
Confidence 45667777753 23345566677888999976 67777776654211 1100011244 3344333334 89998
Q ss_pred CCC
Q 042821 79 VSQ 81 (81)
Q Consensus 79 VS~ 81 (81)
++.
T Consensus 83 lP~ 85 (95)
T 1c07_A 83 PPH 85 (95)
T ss_dssp CCS
T ss_pred CCC
Confidence 763
No 14
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=46.34 E-value=30 Score=19.02 Aligned_cols=29 Identities=17% Similarity=0.117 Sum_probs=23.9
Q ss_pred ChhhHHHHHHHHHHhccccchHHHHHHHHHHH
Q 042821 17 EPLDQLEQIDNLQRLGLAYHFQTEIRNILHGI 48 (81)
Q Consensus 17 ~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i 48 (81)
-..+.+.||...+++|++ -+||.+.|...
T Consensus 11 ~d~ewl~LI~~Ak~lGls---leEIrefL~l~ 39 (57)
T 1b0n_B 11 LDQEWVELMVEAKEANIS---PEEIRKYLLLN 39 (57)
T ss_dssp CCHHHHHHHHHHHHTTCC---HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCC---HHHHHHHHHHh
Confidence 347899999999999998 58888887543
No 15
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=43.76 E-value=8 Score=20.96 Aligned_cols=8 Identities=50% Similarity=0.995 Sum_probs=6.2
Q ss_pred HHHhhCCC
Q 042821 70 RLLRQHGY 77 (81)
Q Consensus 70 RLLRq~Gy 77 (81)
+||||||.
T Consensus 39 ~LLkqHgl 46 (48)
T 3vmx_A 39 KLLKQNGL 46 (48)
T ss_dssp HHHHHTTC
T ss_pred HHHHHcCC
Confidence 78888884
No 16
>2kng_A Protein LSR2; DNA-binding domain, immune response, DNA binding protein; NMR {Mycobacterium tuberculosis}
Probab=42.08 E-value=9.4 Score=21.21 Aligned_cols=10 Identities=50% Similarity=0.667 Sum_probs=8.1
Q ss_pred HhhCCCCCCC
Q 042821 72 LRQHGYNVSQ 81 (81)
Q Consensus 72 LRq~Gy~VS~ 81 (81)
-|.+||.||.
T Consensus 22 Ar~nG~~Vsd 31 (55)
T 2kng_A 22 ARRNGHNVST 31 (55)
T ss_dssp HHHTTCCCCS
T ss_pred HHHcCCcCCC
Confidence 4779999984
No 17
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=41.77 E-value=52 Score=19.32 Aligned_cols=72 Identities=11% Similarity=-0.065 Sum_probs=41.9
Q ss_pred HHHHHHHHHHh---hcChhhHHHHHHHHHHhccccchHHHHHHHHHHHhhcCCCCCCCCC-CHHHHHHHHHHHhhCCCCC
Q 042821 4 LKGKVKTTIKY---ATEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYNNNKDDNWRNK-NVYAASVEFRLLRQHGYNV 79 (81)
Q Consensus 4 LkeeVk~ml~~---~~~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~-dL~~~aL~FRLLRq~Gy~V 79 (81)
-+++.+.+|.. .+..+..=++...+.++|++ ++|+.+++..+-. +.....+ +=+..|+.-.-.+++|+.+
T Consensus 13 e~~~~~~~F~~~D~~dG~Is~~el~~~l~~~gl~---~~el~~i~~~~D~---d~dG~id~~EF~~~m~~~~~~~~g~~l 86 (106)
T 1eh2_A 13 DKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLP---VDILGRVWELSDI---DHDGMLDRDEFAVAMFLVYCALEKEPV 86 (106)
T ss_dssp HHHHHHHHHTTSCCSSSCCBHHHHHHHHHTTTCC---HHHHHHHHHHHCS---SCSSBCCHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCCeEcHHHHHHHHHHcCCC---HHHHHHHHHHHcC---CCCCcCcHHHHHHHHHHHHHHHcCCCC
Confidence 35566677743 23345666778888999987 6666666554411 1101111 2245666666677789887
Q ss_pred CC
Q 042821 80 SQ 81 (81)
Q Consensus 80 S~ 81 (81)
++
T Consensus 87 P~ 88 (106)
T 1eh2_A 87 PM 88 (106)
T ss_dssp CS
T ss_pred CC
Confidence 63
No 18
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=41.56 E-value=49 Score=18.93 Aligned_cols=69 Identities=16% Similarity=0.120 Sum_probs=41.8
Q ss_pred HHHHHHHHh----hcChhhHHHHHHHHHHhccccchHHHHHHHHHHHhhcCCCCCCCC-CCHHHHHHHHHHHhhCCCCCC
Q 042821 6 GKVKTTIKY----ATEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYNNNKDDNWRN-KNVYAASVEFRLLRQHGYNVS 80 (81)
Q Consensus 6 eeVk~ml~~----~~~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~-~dL~~~aL~FRLLRq~Gy~VS 80 (81)
++.+..|.. .+..+..=++...+.++|++ ++|++.++..+-... + ... .+=+..++.-.-+.|+|+.++
T Consensus 11 ~~~~~~F~~~D~d~dG~Is~~el~~~l~~~~l~---~~~l~~i~~~~D~d~-d--G~i~~~EF~~~~~~~~~~~~g~~~~ 84 (99)
T 1qjt_A 11 PVYEKYYRQVEAGNTGRVLALDAAAFLKKSGLP---DLILGKIWDLADTDG-K--GVLSKQEFFVALRLVACAQNGLEVS 84 (99)
T ss_dssp THHHHHHHHHCCTTSSCCCSHHHHHHHHTSSSC---HHHHHHHHHHHCCSS-S--SSCCSHHHHHHHHHHHHHTTTCCSS
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHHHHcCCC---HHHHHHHHHHHCCCC-C--CcCCHHHHHHHHHHHHHHHcCCCCC
Confidence 455666642 22335555667778889976 677777766552111 1 111 233467788888899999887
No 19
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=41.39 E-value=38 Score=19.29 Aligned_cols=26 Identities=31% Similarity=0.509 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHhccccchHHHHHHHHHH
Q 042821 19 LDQLEQIDNLQRLGLAYHFQTEIRNILHG 47 (81)
Q Consensus 19 ~~~L~lID~lqrLGi~~hF~~EI~~~L~~ 47 (81)
+++|.+|-.++.+|++ =+||..+|+.
T Consensus 3 l~rL~~I~~lr~lGfs---L~eIk~~l~~ 28 (99)
T 1q08_A 3 LQRLKFIRHARQLGFS---LESIRELLSI 28 (99)
T ss_dssp HHHHHHHHHHHHTTCC---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCC---HHHHHHHHHH
Confidence 5678888888888877 3677777754
No 20
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=40.05 E-value=9.1 Score=21.41 Aligned_cols=8 Identities=75% Similarity=1.277 Sum_probs=5.2
Q ss_pred HHHhhCCC
Q 042821 70 RLLRQHGY 77 (81)
Q Consensus 70 RLLRq~Gy 77 (81)
+||||||-
T Consensus 46 ~LLkqHgl 53 (58)
T 3a2a_A 46 KLLRQHGL 53 (58)
T ss_dssp HHHHHC--
T ss_pred HHHHHcCC
Confidence 78899884
No 21
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=38.98 E-value=20 Score=21.30 Aligned_cols=71 Identities=11% Similarity=0.118 Sum_probs=39.4
Q ss_pred HHHHHHHHHh--h--cChhhHHHHHHHHHHhccccchHHHHHHHHHHHhhcCCCCCCCCC-CHHHHHHHHHHHhhCCCCC
Q 042821 5 KGKVKTTIKY--A--TEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYNNNKDDNWRNK-NVYAASVEFRLLRQHGYNV 79 (81)
Q Consensus 5 keeVk~ml~~--~--~~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~-dL~~~aL~FRLLRq~Gy~V 79 (81)
+++.+..|.. . +..+..=++...+.++|++ ++|++.++..+-. +.....+ +=+..++.-.-.+++|+.+
T Consensus 21 ~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~gl~---~~el~~i~~~~D~---d~dG~I~~~EF~~~m~~~~~~~~G~~l 94 (110)
T 1iq3_A 21 REYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLS---IPELSYIWELSDA---DCDGALTLPEFCAAFHLIVARKNGYPL 94 (110)
T ss_dssp HHHHHHHHHHHCCSSSSEEEHHHHHHHCCSSSCS---SCCHHHHHHHHCS---SSCSEEEHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCC---HHHHHHHHHHHcC---CCCCcCcHHHHHHHHHHHHHHHcCCCC
Confidence 5667777753 1 2345556677778889976 4566666554411 1100111 2234455555567889988
Q ss_pred CC
Q 042821 80 SQ 81 (81)
Q Consensus 80 S~ 81 (81)
+.
T Consensus 95 P~ 96 (110)
T 1iq3_A 95 PE 96 (110)
T ss_dssp CC
T ss_pred Cc
Confidence 63
No 22
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Probab=36.30 E-value=79 Score=19.81 Aligned_cols=71 Identities=10% Similarity=0.052 Sum_probs=42.2
Q ss_pred HHHHHHHHHhh---cChhhHHHHHHHHHHhccccchHHHHHHHHHHHhhcCCCCCCCC-CCHHHHHHHHHHHhhCCCCCC
Q 042821 5 KGKVKTTIKYA---TEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYNNNKDDNWRN-KNVYAASVEFRLLRQHGYNVS 80 (81)
Q Consensus 5 keeVk~ml~~~---~~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~-~dL~~~aL~FRLLRq~Gy~VS 80 (81)
+++.+.+|..- +..+..=++...+.++|++ ++|++.++..+- .+..... .+=+..++.-.-++++|+.++
T Consensus 50 ~~~l~~~F~~fDd~dG~Is~~El~~~l~~~gl~---~~el~~I~~~~D---~d~dG~Ld~~EF~~am~li~~~~~G~~lP 123 (139)
T 2jq6_A 50 KPTYDEIFYTLSPVNGKITGANAKKEMVKSKLP---NTVLGKIWKLAD---VDKDGLLDDEEFALANHLIKVKLEGHELP 123 (139)
T ss_dssp HHHHHHHHHHSCCSSSEEEHHHHHHHHHHTTCC---HHHHHHHHHHHC---SSCCSEEEHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHhCCCCCeECHHHHHHHHHHhCcC---HHHHHHHHHHhC---CCCCCcCcHHHHHHHHHHHHHHHcCCCCC
Confidence 56677777532 2335666778888999987 556666655441 1110011 133456666666789999886
Q ss_pred C
Q 042821 81 Q 81 (81)
Q Consensus 81 ~ 81 (81)
+
T Consensus 124 ~ 124 (139)
T 2jq6_A 124 A 124 (139)
T ss_dssp S
T ss_pred c
Confidence 3
No 23
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=35.95 E-value=47 Score=20.40 Aligned_cols=46 Identities=15% Similarity=0.243 Sum_probs=27.1
Q ss_pred ChHHHHHHHHHHHhh---cChhhHHHHHHHHHHhccccchHHH-HHHHHHHHhh
Q 042821 1 AEELKGKVKTTIKYA---TEPLDQLEQIDNLQRLGLAYHFQTE-IRNILHGIYN 50 (81)
Q Consensus 1 ~e~LkeeVk~ml~~~---~~~~~~L~lID~lqrLGi~~hF~~E-I~~~L~~i~~ 50 (81)
+++++..++.++... .|.-+ .+-.++-|++. +|..| +..++.....
T Consensus 3 ~eel~kki~~ll~EY~~~~D~~E---a~~cl~eL~~p-~f~~e~V~~~i~~alE 52 (129)
T 2nsz_A 3 VNHLVKEIDMLLKEYLLSGDISE---AEHCLKELEVP-HFHHELVYEAIVMVLE 52 (129)
T ss_dssp CCHHHHHHHHHHHHHHHHCCHHH---HHHHHHHHTCG-GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHH---HHHHHHHhCCC-ccHHHHHHHHHHHHHc
Confidence 367888898888753 34433 34456667776 55444 3444444444
No 24
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=33.33 E-value=44 Score=21.51 Aligned_cols=21 Identities=10% Similarity=0.233 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHHHhhCCCCCC
Q 042821 60 KNVYAASVEFRLLRQHGYNVS 80 (81)
Q Consensus 60 ~dL~~~aL~FRLLRq~Gy~VS 80 (81)
.++..+.-.++.|+..||.-+
T Consensus 131 ~~l~~i~~~Y~~Lk~~G~~FP 151 (163)
T 1x5b_A 131 PQFSLISATIKSMKEEGITFP 151 (163)
T ss_dssp STTHHHHHHHHHHHTTTCCCC
T ss_pred cccHHHHHHHHHHHHcCCCCC
Confidence 478889999999999999764
No 25
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=30.90 E-value=30 Score=23.36 Aligned_cols=21 Identities=5% Similarity=0.175 Sum_probs=17.9
Q ss_pred CCHHHHHHHHHHHhhCCCCCC
Q 042821 60 KNVYAASVEFRLLRQHGYNVS 80 (81)
Q Consensus 60 ~dL~~~aL~FRLLRq~Gy~VS 80 (81)
.++..++=.++.|+..||.-+
T Consensus 124 ~~l~~i~~~Y~~Lk~~G~~FP 144 (226)
T 3zyq_A 124 PKYKVVQDTYQIMKVEGHVFP 144 (226)
T ss_dssp GGGHHHHHHHHHHHHHTCCCC
T ss_pred cchHHHHHHHHHHHhcCCCcc
Confidence 478888899999999999765
No 26
>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81
Probab=29.79 E-value=90 Score=19.19 Aligned_cols=44 Identities=18% Similarity=0.299 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhcChhhHHHHHHHHHHhccccchHHHHHHHHHHHh
Q 042821 4 LKGKVKTTIKYATEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIY 49 (81)
Q Consensus 4 LkeeVk~ml~~~~~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i~ 49 (81)
+++.|=.+|. ..|..+-+++..|++=||+--=.+.|..+|+++-
T Consensus 13 lReRvIHLLA--Lkpykk~EL~~RL~kdGl~~~d~~~l~~iL~eVA 56 (104)
T 2doa_A 13 FRDRVLHLLA--LRPYRKAELLLRLQKDGLTQADKDALDGLLQQVA 56 (104)
T ss_dssp HHHHHHHHHH--HSCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHH--cCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4566666664 4556778899999999999988888999999983
No 27
>1y2k_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, pyrazole, hydrolase; HET: 7DE; 1.36A {Homo sapiens} SCOP: a.211.1.2 PDB: 1xon_A* 1xoq_A* 1xom_A* 1xor_A* 1y2c_A* 1y2d_A* 1y2e_A* 1y2b_A* 3iak_A* 3k4s_A* 1tbb_A* 1tb7_A* 3sl5_A* 3sl4_A* 2fm5_A* 3sl3_A* 2fm0_A* 3sl6_A* 3sl8_A* 1oyn_A* ...
Probab=28.56 E-value=22 Score=25.84 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhhCCCCCC
Q 042821 62 VYAASVEFRLLRQHGYNVS 80 (81)
Q Consensus 62 L~~~aL~FRLLRq~Gy~VS 80 (81)
=|-+|.+|++|++.|+++-
T Consensus 167 nhH~a~a~~lL~~~~~nif 185 (349)
T 1y2k_A 167 NHHLAVGFKLLQEENCDIF 185 (349)
T ss_dssp HHHHHHHHHGGGSTTCCTT
T ss_pred HHHHHHHHHHHcccccchh
Confidence 4568999999999999863
No 28
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=28.51 E-value=37 Score=16.31 Aligned_cols=20 Identities=15% Similarity=0.311 Sum_probs=12.2
Q ss_pred ccccchHHHHHHHHHHHhhc
Q 042821 32 GLAYHFQTEIRNILHGIYNN 51 (81)
Q Consensus 32 Gi~~hF~~EI~~~L~~i~~~ 51 (81)
|+.+.=++.|++.|+.+...
T Consensus 5 gvtrfdekqieelldnciet 24 (31)
T 4h62_V 5 GVTRFDEKQIEELLDNCIET 24 (31)
T ss_dssp -----CHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHH
Confidence 67777789999999987543
No 29
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=28.16 E-value=73 Score=20.23 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHhh---cChhhHHHHHHHHHHhccccchHHH-HHHHHHHHhh
Q 042821 2 EELKGKVKTTIKYA---TEPLDQLEQIDNLQRLGLAYHFQTE-IRNILHGIYN 50 (81)
Q Consensus 2 e~LkeeVk~ml~~~---~~~~~~L~lID~lqrLGi~~hF~~E-I~~~L~~i~~ 50 (81)
++++..++.+|... .|.-+ .+-.++-|++. +|..| +..++.....
T Consensus 6 eel~kki~~lL~EY~~~~D~~E---A~~cl~EL~~p-~f~~e~V~~~i~~alE 54 (152)
T 2ion_A 6 NHLVKEIDMLLKEYLLSGDISE---AEHCLKELEVP-HFHHELVYEAIVMVLE 54 (152)
T ss_dssp CHHHHHHHHHHHHHHHHCCHHH---HHHHHHHHTCG-GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHH---HHHHHHHhCCC-cchHHHHHHHHHHHHc
Confidence 67888888888753 34433 44566667776 55444 3444444444
No 30
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=26.27 E-value=53 Score=16.47 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhhCCC
Q 042821 62 VYAASVEFRLLRQHGY 77 (81)
Q Consensus 62 L~~~aL~FRLLRq~Gy 77 (81)
|--.|+.|-|||-+|-
T Consensus 17 LvGla~Gf~LLkiqg~ 32 (35)
T 1vf5_F 17 FVGWGLGVLLLKIQGA 32 (35)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhheeecc
Confidence 5568999999998863
No 31
>1f0j_A PDE4B, phosphodiesterase 4B; PDE phosphodiesterase, hydrolase; 1.77A {Homo sapiens} SCOP: a.211.1.2 PDB: 1ro6_A* 1ro9_A* 1ror_A* 3hmv_A* 1tb5_A* 1xm6_A* 1xlx_A* 1xm4_A* 1xlz_A* 1xmu_A* 1xmy_A* 1xn0_A* 1xos_A* 1xot_B* 1y2h_A* 1y2j_A* 3kkt_A* 3g4i_A* 3g4k_A* 3g4l_A* ...
Probab=26.23 E-value=27 Score=25.76 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhhCCCCCC
Q 042821 62 VYAASVEFRLLRQHGYNVS 80 (81)
Q Consensus 62 L~~~aL~FRLLRq~Gy~VS 80 (81)
=|-+|.+|++|++.|+++-
T Consensus 154 nhH~a~a~~lL~~~~~nif 172 (377)
T 1f0j_A 154 NHHLAVGFKLLQEEHCDIF 172 (377)
T ss_dssp HHHHHHHHHGGGSTTCCTT
T ss_pred HHHHHHHHHHHcccccchh
Confidence 4568999999999999863
No 32
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=26.15 E-value=39 Score=19.51 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhhCCCCC
Q 042821 63 YAASVEFRLLRQHGYNV 79 (81)
Q Consensus 63 ~~~aL~FRLLRq~Gy~V 79 (81)
...+...+.|++.||+|
T Consensus 66 ~rs~~aa~~L~~~G~~v 82 (108)
T 3gk5_A 66 NRSAAAVEFLSQLGLNI 82 (108)
T ss_dssp HHHHHHHHHHHTTTCCE
T ss_pred cHHHHHHHHHHHcCCCE
Confidence 35778889999999965
No 33
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=26.09 E-value=47 Score=19.26 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhhCCCCC
Q 042821 63 YAASVEFRLLRQHGYNV 79 (81)
Q Consensus 63 ~~~aL~FRLLRq~Gy~V 79 (81)
...+...+.|++.||+|
T Consensus 101 ~rs~~a~~~L~~~G~~v 117 (134)
T 3g5j_A 101 MRSGSIVNLLSSLGVNV 117 (134)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred hHHHHHHHHHHHcCCce
Confidence 46778889999999976
No 34
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=25.49 E-value=99 Score=17.62 Aligned_cols=45 Identities=13% Similarity=0.243 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHh----hcChhhHHHHHHHHHHhccccchHHHHHHHHHHH
Q 042821 3 ELKGKVKTTIKY----ATEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGI 48 (81)
Q Consensus 3 ~LkeeVk~ml~~----~~~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i 48 (81)
+..+++|..|.. .+..+..=++...++.+|+..- ++||+.++..+
T Consensus 33 ~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~-~~ei~~l~~~~ 81 (100)
T 2lv7_A 33 DELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPN-EVELEVIIQRL 81 (100)
T ss_dssp GGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCC-TTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCC-HHHHHHHHHHH
Confidence 456778888863 2345777788889999997543 56788777665
No 35
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=24.61 E-value=34 Score=22.61 Aligned_cols=15 Identities=27% Similarity=0.445 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHhccc
Q 042821 20 DQLEQIDNLQRLGLA 34 (81)
Q Consensus 20 ~~L~lID~lqrLGi~ 34 (81)
-+.+++++|+|+|+.
T Consensus 141 v~~E~~~AL~RiG~~ 155 (156)
T 3brc_A 141 VRSEMTHALERIGFK 155 (156)
T ss_dssp HHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHhCcC
Confidence 468999999999985
No 36
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=24.61 E-value=33 Score=19.92 Aligned_cols=25 Identities=24% Similarity=0.573 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHhccc-----cchHHHHHHH
Q 042821 19 LDQLEQIDNLQRLGLA-----YHFQTEIRNI 44 (81)
Q Consensus 19 ~~~L~lID~lqrLGi~-----~hF~~EI~~~ 44 (81)
+..+ ++..|+||||+ --=++||...
T Consensus 29 Fs~i-ql~RL~kLGI~ktdP~~LT~eEi~~F 58 (71)
T 2eo2_A 29 FSEI-QLSRLKKLGIHKTDPSTLTEEEVRKF 58 (71)
T ss_dssp CCHH-HHHHHHHHTCCCCSTTTCCHHHHHHH
T ss_pred cCHH-HHHHHHHcCCCCCCcccCCHHHHhhc
Confidence 4555 66799999994 4566777665
No 37
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=24.14 E-value=1.3e+02 Score=18.49 Aligned_cols=70 Identities=14% Similarity=0.217 Sum_probs=41.1
Q ss_pred HHHHHHHHHhh---cChhhHHHHHHHHHHhccccchHHHHHHHHHHHhhcCCCCCCCCCCH--HHHHHHHHHHhhCCCCC
Q 042821 5 KGKVKTTIKYA---TEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYNNNKDDNWRNKNV--YAASVEFRLLRQHGYNV 79 (81)
Q Consensus 5 keeVk~ml~~~---~~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~dL--~~~aL~FRLLRq~Gy~V 79 (81)
+.+.+.+|..- +..+..-++.+.+.+.|++ + +.|.+|++.-...+...-|. +.+||..--.++.|+.+
T Consensus 32 ~~~y~~iF~~lD~~dG~Isg~elr~~~~~sgLp---~----~~L~~Iw~laD~d~dG~Ld~~EF~~aM~Li~~~~~G~~l 104 (121)
T 3fia_A 32 RAKHDQQFHSLKPISGFITGDQARNFFFQSGLP---Q----PVLAQIWALADMNNDGRMDQVEFSIAMKLIKLKLQGYQL 104 (121)
T ss_dssp HHHHHHHHHHTCCBTTBEEHHHHHHHHGGGCCC---H----HHHHHHHHHHCTTCSSEECHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhCCCCCeECHHHHHHHHHHcCCC---H----HHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHHHHcCCCC
Confidence 45556666532 2345566788889999997 3 34666655322111111133 45677766678899988
Q ss_pred CC
Q 042821 80 SQ 81 (81)
Q Consensus 80 S~ 81 (81)
++
T Consensus 105 P~ 106 (121)
T 3fia_A 105 PS 106 (121)
T ss_dssp CS
T ss_pred CC
Confidence 63
No 38
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1
Probab=23.99 E-value=82 Score=17.47 Aligned_cols=28 Identities=7% Similarity=0.077 Sum_probs=18.6
Q ss_pred HHHHHHHhccccchHHHHHHHHHHHhhc
Q 042821 24 QIDNLQRLGLAYHFQTEIRNILHGIYNN 51 (81)
Q Consensus 24 lID~lqrLGi~~hF~~EI~~~L~~i~~~ 51 (81)
+|..++.+=-+...+++|...|+..=+.
T Consensus 10 iv~~ve~~l~~~~t~~~I~~~l~~~C~~ 37 (78)
T 1nkl_A 10 IIQKLEDMVGPQPNEDTVTQAASQVCDK 37 (78)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHhh
Confidence 5556666655667778888888776443
No 39
>2e5n_A RNA polymerase II elongation factor ELL2; ELL_N2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.97 E-value=1.3e+02 Score=18.33 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhhcChhhHHHHHHHHHHhccccchHHHHHHHHHHHh
Q 042821 4 LKGKVKTTIKYATEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIY 49 (81)
Q Consensus 4 LkeeVk~ml~~~~~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i~ 49 (81)
+++.|=.+|. ..|..+-+++..|++=|++.-=.+.|..+|+++-
T Consensus 14 lReRvIHLLA--LkPykkpEL~~RL~kdGl~~~d~~~l~~iL~eVa 57 (100)
T 2e5n_A 14 YRDRVIHLLA--LKAYKKPELLARLQKDGVNQKDKNSLGAILQQVA 57 (100)
T ss_dssp HHHHHHHHHH--HSCBCHHHHHHHHHHHCCCHHHHHHHHHHHHHHE
T ss_pred HHHHHHHHHH--cCCCCcHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 4555556653 4566678899999999999988888999999983
No 40
>3v93_A Cyclic nucleotide specific phosphodiesterase; parasite, phosphodiesterases,, hydrolase; 2.00A {Trypanosoma cruzi} PDB: 3v94_A*
Probab=23.28 E-value=31 Score=25.11 Aligned_cols=20 Identities=15% Similarity=0.373 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHHhhCCCCCC
Q 042821 61 NVYAASVEFRLLRQHGYNVS 80 (81)
Q Consensus 61 dL~~~aL~FRLLRq~Gy~VS 80 (81)
.=|-+|..|++|++.|+++-
T Consensus 170 EnhH~a~~f~lL~~~~~nif 189 (345)
T 3v93_A 170 EQLHTATAFELLNVTEFDFT 189 (345)
T ss_dssp HHHHHHHHHHHHTSTTTCTT
T ss_pred HHHHHHHHHHHhcccccChh
Confidence 35678999999999998864
No 41
>3dyn_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; phophodiestrase, enzyme mechanism, hydrolase, manganes binding, phosphoprotein; HET: PCG IBM; 2.10A {Homo sapiens} SCOP: a.211.1.2 PDB: 3dyl_A* 3dy8_A* 3dyq_A* 3dys_A* 3jsi_A* 3jsw_A* 2yy2_A* 2hd1_A* 3k3e_A* 3k3h_A* 4gh6_A* 3n3z_A*
Probab=22.93 E-value=31 Score=24.96 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHhhCCCCCC
Q 042821 61 NVYAASVEFRLLRQHGYNVS 80 (81)
Q Consensus 61 dL~~~aL~FRLLRq~Gy~VS 80 (81)
.=|-+|.+|++|++.|+++-
T Consensus 145 EnhH~a~~~~lL~~~~~nif 164 (329)
T 3dyn_A 145 ENHHCAVAFQILAEPECNIF 164 (329)
T ss_dssp HHHHHHHHHHHHTSGGGCTT
T ss_pred HHHHHHHHHHHHhcccchhc
Confidence 34678999999999988763
No 42
>1of9_A Pore-forming peptide ameobapore A; toxin, saplip, amoebapore A; NMR {Entamoeba histolytica} SCOP: a.64.1.4
Probab=22.91 E-value=71 Score=17.72 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=22.1
Q ss_pred HHHHHHHHhccccchHHHHHHHHHHHhhcC
Q 042821 23 EQIDNLQRLGLAYHFQTEIRNILHGIYNNN 52 (81)
Q Consensus 23 ~lID~lqrLGi~~hF~~EI~~~L~~i~~~~ 52 (81)
.+|..++.+=-+. .+++|...|++.=+..
T Consensus 10 ~vv~~ve~~l~~n-t~~~I~~~l~~~C~~l 38 (77)
T 1of9_A 10 GLINTLENLLTTK-GADKVKDYISSLCNKA 38 (77)
T ss_dssp HHHHHHHHHCSSS-CSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHC-cHHHHHHHHHHHHHcC
Confidence 4677777776667 9999999999885543
No 43
>2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A {Homo sapiens} PDB: 2ous_A 2ouu_A* 3sn7_A* 3sni_A* 3snl_A* 4dff_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A 2ouy_A* 4ael_A* 2y0j_A* 4ddl_A* 3uuo_A* 3ui7_A* 2o8h_A* 2ovv_A* 2ovy_A* ...
Probab=22.87 E-value=27 Score=25.13 Aligned_cols=19 Identities=21% Similarity=0.165 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhhCCCCCC
Q 042821 62 VYAASVEFRLLRQHGYNVS 80 (81)
Q Consensus 62 L~~~aL~FRLLRq~Gy~VS 80 (81)
=|-+|.+|++|++.|+++-
T Consensus 148 ~hH~a~a~~iL~~~~~nif 166 (331)
T 2our_A 148 QHHFSQTVSILQLEGHNIF 166 (331)
T ss_dssp HHHHHHHHHHHTSTTCCTT
T ss_pred HHHHHHHHHHHhccccchh
Confidence 3568999999999998863
No 44
>1taz_A Calcium/calmodulin-dependent 3',5'-cyclic nucleot phosphodiesterase 1B; PDE1B, hydrolase; HET: CME; 1.77A {Homo sapiens} SCOP: a.211.1.2
Probab=22.01 E-value=30 Score=25.36 Aligned_cols=20 Identities=25% Similarity=0.311 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHhhCCCCCC
Q 042821 61 NVYAASVEFRLLRQHGYNVS 80 (81)
Q Consensus 61 dL~~~aL~FRLLRq~Gy~VS 80 (81)
.=|-+|.+|++|++.|+++-
T Consensus 152 EnhH~a~a~~iL~~~~~nif 171 (365)
T 1taz_A 152 ENHHISSVFRLMQDDEMNIF 171 (365)
T ss_dssp HHHHHHHHHHHTTSGGGCTT
T ss_pred HHHHHHHHHHHHhCcccccc
Confidence 34669999999999998763
No 45
>1sn9_A BBAT, tetrameric beta-BETA-alpha mini-protein; protein design, domain swapping, oligomerization, de novo protein; HET: DBZ; 1.20A {Synthetic} SCOP: k.14.1.1 PDB: 1sna_A* 1sne_A* 1xof_B* 1xof_A*
Probab=22.00 E-value=70 Score=14.72 Aligned_cols=16 Identities=25% Similarity=0.592 Sum_probs=12.5
Q ss_pred ccchHHHHHHHHHHHh
Q 042821 34 AYHFQTEIRNILHGIY 49 (81)
Q Consensus 34 ~~hF~~EI~~~L~~i~ 49 (81)
+|.|.+|....|.+..
T Consensus 6 sydfadelakllrqa~ 21 (26)
T 1sn9_A 6 SYDFADELAKLLRQAX 21 (26)
T ss_dssp TBCHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHhh
Confidence 6888888888887653
No 46
>3g4g_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, UCR2, alternative splicing, cytoplasm, cytoskeleton, hydrolase, membrane; HET: D71; 2.30A {Homo sapiens} PDB: 3g45_A*
Probab=21.48 E-value=35 Score=25.67 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhhCCCCCC
Q 042821 62 VYAASVEFRLLRQHGYNVS 80 (81)
Q Consensus 62 L~~~aL~FRLLRq~Gy~VS 80 (81)
=|-+|.+|++|++.|+++-
T Consensus 233 nhH~a~~f~LL~~~~~nIf 251 (421)
T 3g4g_A 233 NHHLAVGFKLLQEENCDIF 251 (421)
T ss_dssp HHHHHHHHHGGGSTTCCTT
T ss_pred HHHHHHHHHHHhhccchhh
Confidence 4568999999999998763
No 47
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=21.25 E-value=93 Score=17.83 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHhh--cChhhHHHHHHHHHHhccc
Q 042821 2 EELKGKVKTTIKYA--TEPLDQLEQIDNLQRLGLA 34 (81)
Q Consensus 2 e~LkeeVk~ml~~~--~~~~~~L~lID~lqrLGi~ 34 (81)
+..|..++.++... ..|+..=.+.+.|+.=||.
T Consensus 19 ~~Ik~~Ik~lI~~Ed~~kPlSD~~I~~~L~~~Gi~ 53 (76)
T 2ahq_A 19 GELMKLIKEIVENEDKRKPYSDQEIANILKEKGFK 53 (76)
T ss_dssp HHHHHHHHHHGGGCCSSSCCCHHHHHHHHTTTSSC
T ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCC
Confidence 34667777777654 4778777888888777764
No 48
>3itu_A CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn-binding, all-alpha-helical, alternative splicing, hydrolase, membrane, polymorphism; HET: IBM; 1.58A {Homo sapiens} PDB: 3itm_A* 1z1l_A
Probab=21.01 E-value=37 Score=24.66 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHHhhCCCCC
Q 042821 61 NVYAASVEFRLLRQHGYNV 79 (81)
Q Consensus 61 dL~~~aL~FRLLRq~Gy~V 79 (81)
.=|-+|..|++|++.|+++
T Consensus 153 EnhH~a~~~~lL~~~~~ni 171 (345)
T 3itu_A 153 ERHHFAQAIAILNTHGCNI 171 (345)
T ss_dssp HHHHHHHHHHHHTSTTCCT
T ss_pred HHHHHHHHHHHhccccchh
Confidence 3466899999999999876
No 49
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=20.29 E-value=36 Score=26.36 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=17.9
Q ss_pred CCHHHHHHHHHHHhhCCCCCCC
Q 042821 60 KNVYAASVEFRLLRQHGYNVSQ 81 (81)
Q Consensus 60 ~dL~~~aL~FRLLRq~Gy~VS~ 81 (81)
+.+-++||+ |+|++.||.|.|
T Consensus 18 k~~~~~~l~-~~l~~~g~~v~~ 38 (545)
T 1s1m_A 18 KGIAAASLA-AILEARGLNVTI 38 (545)
T ss_dssp HHHHHHHHH-HHHHTTTCCEEE
T ss_pred hHHHHHHHH-HHHHhCCceeee
Confidence 468888888 999999999864
No 50
>1tbf_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5A, hydrolase; HET: VIA; 1.30A {Homo sapiens} SCOP: a.211.1.2 PDB: 1t9s_A* 1xoz_A* 1xp0_A* 2chm_A* 3tge_A* 3tgg_A* 3hc8_A* 3hdz_A* 1t9r_A* 3sie_A* 3shy_A* 3shz_A* 3b2r_A* 2h44_A* 2h42_A* 2h40_A* 1rkp_A* 1udt_A* 1udu_A* 1uho_A* ...
Probab=20.07 E-value=46 Score=24.11 Aligned_cols=20 Identities=10% Similarity=0.052 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHhhCCCCCC
Q 042821 61 NVYAASVEFRLLRQHGYNVS 80 (81)
Q Consensus 61 dL~~~aL~FRLLRq~Gy~VS 80 (81)
.=|-+|.+|++|++.|+++-
T Consensus 171 EnhH~a~a~~iL~~~~~ni~ 190 (347)
T 1tbf_A 171 EHHHFDQCLMILNSPGNQIL 190 (347)
T ss_dssp HHHHHHHHHHHHHSTTCCTT
T ss_pred HHHHHHHHHHHHcCcccchh
Confidence 34668999999999999764
No 51
>2r8q_A Class I phosphodiesterase PDEB1; leishimaniasis, parasite inhibitor selectivity, CAMP phosphodiesterase, hydrolase; HET: IBM; 1.50A {Leishmania major}
Probab=20.03 E-value=62 Score=23.55 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhhCCCCCC
Q 042821 62 VYAASVEFRLLRQHGYNVS 80 (81)
Q Consensus 62 L~~~aL~FRLLRq~Gy~VS 80 (81)
=|-+|.+|++|++.|+++-
T Consensus 174 ~hH~a~a~~iL~~~~~nif 192 (359)
T 2r8q_A 174 VHHCSLAIEILSDPAADVF 192 (359)
T ss_dssp HHHHHHHHHHHTSTTTCTT
T ss_pred HHHHHHHHHHHhccCcccc
Confidence 4558999999999998763
Done!