BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042822
(775 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 11/122 (9%)
Query: 16 EHARASMLYAQLKKSRKILVILDNVWTELHLKDVGIPFGDEHKGCKVLLTTRGRDLL-SR 74
E A+ + L+K + L+ILD+VW LK F ++ C++LLTTR + + S
Sbjct: 221 EEAKDRLRVLMLRKHPRSLLILDDVWDPWVLK----AFDNQ---CQILLTTRDKSVTDSV 273
Query: 75 MGSEADVRMDI-LNEEEAWRLFEVKLGNDGLIRRMKSTATQIVKQCGGLPIALEPIAKAL 133
MG + V ++ L E+ + + + + + A I+K+C G P+ + I L
Sbjct: 274 MGPKHVVPVESGLGREKGLEILSLFVNMKK--EDLPAEAHSIIKECKGSPLVVSLIGALL 331
Query: 134 RN 135
R+
Sbjct: 332 RD 333
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 21/127 (16%)
Query: 16 EHARASMLYAQLKKSRKILVILDNVWTELHLKDVGIPFGDEHKGCKVLLTTRGRDLL-SR 74
E A+ + L+K + L+ILD+VW LK F + C++LLTTR + + S
Sbjct: 227 EEAKDRLRILMLRKHPRSLLILDDVWDSWVLK----AFDSQ---CQILLTTRDKSVTDSV 279
Query: 75 MGSEADVRMD-ILNEEEAWRLFEVKLGNDGLIRRMKST-----ATQIVKQCGGLPIALEP 128
MG + V ++ L +E+ + L MK A I+K+C G P+ +
Sbjct: 280 MGPKYVVPVESSLGKEKGLEIL-------SLFVNMKKADLPEQAHSIIKECKGSPLVVSL 332
Query: 129 IAKALRN 135
I LR+
Sbjct: 333 IGALLRD 339
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 16 EHARASMLYAQLKKSRKILVILDNVWTELHLKDVGIPFGDEHKGCKVLLTTRGRDLL-SR 74
E A+ + L+K + L+ILD+VW LK F + C++LLTTR + + S
Sbjct: 221 EEAKDRLRILMLRKHPRSLLILDDVWDSWVLK----AFDSQ---CQILLTTRDKSVTDSV 273
Query: 75 MGSEADVRMD-ILNEEEAWRLFEVKLGNDGLIRRMKSTATQIVKQCGGLPIALEPIAKAL 133
MG + V ++ L +E+ + + + + A I+K+C G P+ + I L
Sbjct: 274 MGPKYVVPVESSLGKEKGLEILSLFVNMKK--ADLPEQAHSIIKECKGSPLVVSLIGALL 331
Query: 134 RN 135
R+
Sbjct: 332 RD 333
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 16 EHARASMLYAQLKKSRKILVILDNVWTELHLKDVGIPFGDEHKGCKVLLTTRGRDLL-SR 74
E A+ + L+K + L+ILD+VW LK F ++ C++LLTT + + S
Sbjct: 228 EEAKDRLRVLMLRKHPRSLLILDDVWDPWVLK----AFDNQ---CQILLTTSDKSVTDSV 280
Query: 75 MGSEADVRMDI-LNEEEAWRLFEVKLGNDGLIRRMKSTATQIVKQCGGLPIALEPIAKAL 133
MG + V ++ L E+ + + + + + A I+K+C G P+ + I L
Sbjct: 281 MGPKHVVPVESGLGREKGLEILSLFVNMKK--EDLPAEAHSIIKECKGSPLVVSLIGALL 338
Query: 134 RN 135
R+
Sbjct: 339 RD 340
>pdb|2Z1A|A Chain A, Crystal Structure Of 5'-Nucleotidase Precursor From
Thermus Thermophilus Hb8
Length = 552
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 79 ADVRMDILNEEEAWRLFEVKLGN---DGLIRRMKSTATQIVKQCGG 121
A+ ++D++ E R E LGN DG++ + ++ TQI Q GG
Sbjct: 335 AEAKVDLVGERAVVRRRESNLGNLITDGMLWKTRNAGTQIALQNGG 380
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Query: 86 LNEEEAWRLFEVKLGNDGLIRRMKSTATQIVKQCGGLPIALEPIAKALRNKTESECW 142
L E AW L + GN S T+IV Q G +PI +E ++ + E W
Sbjct: 78 LQFESAWVLTNIASGN--------SLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVW 126
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 89 EEAWRLFEVKLGNDGLIRRMKSTATQIVKQCGGLPIALEPIAKALRNKTESECW 142
E AW L + GN S T+IV Q G +PI +E ++ + E W
Sbjct: 84 ESAWVLTNIASGN--------SLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVW 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,193,201
Number of Sequences: 62578
Number of extensions: 759311
Number of successful extensions: 1444
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1438
Number of HSP's gapped (non-prelim): 9
length of query: 775
length of database: 14,973,337
effective HSP length: 106
effective length of query: 669
effective length of database: 8,340,069
effective search space: 5579506161
effective search space used: 5579506161
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)