Query 042822
Match_columns 775
No_of_seqs 526 out of 4339
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 09:51:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042822.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042822hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1E-67 2.2E-72 599.7 28.6 596 1-668 229-864 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.1E-57 2.4E-62 548.1 43.6 613 21-704 287-944 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.8E-31 3.8E-36 276.0 9.1 208 2-212 69-285 (287)
4 PLN00113 leucine-rich repeat r 100.0 1.1E-28 2.3E-33 298.4 22.3 151 282-437 70-226 (968)
5 PLN00113 leucine-rich repeat r 100.0 1.1E-28 2.4E-33 298.2 22.2 457 280-775 92-578 (968)
6 PLN03210 Resistant to P. syrin 99.9 6.4E-24 1.4E-28 256.5 24.1 341 301-708 556-911 (1153)
7 KOG0444 Cytoskeletal regulator 99.9 7.6E-26 1.7E-30 232.5 -6.0 339 278-704 29-376 (1255)
8 KOG0444 Cytoskeletal regulator 99.9 6.4E-25 1.4E-29 225.7 -5.2 321 278-640 52-377 (1255)
9 KOG4194 Membrane glycoprotein 99.9 3.6E-22 7.9E-27 204.5 5.4 340 280-660 77-425 (873)
10 KOG0472 Leucine-rich repeat pr 99.8 1.8E-24 3.8E-29 211.9 -13.4 434 279-775 66-535 (565)
11 KOG4194 Membrane glycoprotein 99.8 2.5E-21 5.3E-26 198.4 5.6 363 282-701 53-427 (873)
12 KOG0472 Leucine-rich repeat pr 99.8 1.3E-22 2.9E-27 198.8 -11.9 373 280-702 113-540 (565)
13 KOG0618 Serine/threonine phosp 99.8 4.7E-20 1E-24 199.4 -1.7 332 283-667 47-422 (1081)
14 KOG0618 Serine/threonine phosp 99.7 7.4E-19 1.6E-23 190.3 -1.8 361 278-703 65-489 (1081)
15 KOG0617 Ras suppressor protein 99.7 8.8E-19 1.9E-23 152.2 -5.0 166 293-478 23-191 (264)
16 KOG0617 Ras suppressor protein 99.6 2.1E-17 4.5E-22 143.8 -3.4 156 275-436 27-186 (264)
17 KOG4658 Apoptotic ATPase [Sign 99.6 3E-15 6.5E-20 171.9 7.2 162 292-470 512-678 (889)
18 PRK15387 E3 ubiquitin-protein 99.6 4.5E-14 9.7E-19 158.7 16.1 254 332-662 203-456 (788)
19 PRK15387 E3 ubiquitin-protein 99.6 7.6E-14 1.7E-18 156.8 17.7 133 281-436 222-355 (788)
20 PRK15370 E3 ubiquitin-protein 99.5 2.8E-14 6E-19 161.5 11.7 136 284-436 181-317 (754)
21 PRK15370 E3 ubiquitin-protein 99.5 7.2E-14 1.6E-18 158.2 11.7 233 270-554 189-426 (754)
22 KOG4237 Extracellular matrix p 99.2 1.4E-12 2.9E-17 129.1 0.4 269 267-554 54-357 (498)
23 cd00116 LRR_RI Leucine-rich re 99.2 5.6E-12 1.2E-16 132.7 1.1 137 325-471 18-176 (319)
24 KOG4237 Extracellular matrix p 99.1 1.6E-12 3.5E-17 128.5 -4.2 139 291-434 56-199 (498)
25 cd00116 LRR_RI Leucine-rich re 99.1 1.8E-11 3.9E-16 128.9 2.0 82 327-408 78-175 (319)
26 KOG0532 Leucine-rich repeat (L 99.1 4.4E-12 9.5E-17 131.2 -3.3 174 284-479 78-253 (722)
27 KOG0532 Leucine-rich repeat (L 99.1 5.1E-12 1.1E-16 130.7 -3.1 150 279-436 96-247 (722)
28 PF14580 LRR_9: Leucine-rich r 99.0 5.2E-10 1.1E-14 103.2 4.3 108 327-436 16-126 (175)
29 KOG1259 Nischarin, modulator o 98.9 1.4E-10 3.1E-15 110.6 0.3 135 328-477 282-416 (490)
30 PF14580 LRR_9: Leucine-rich r 98.9 1.8E-09 4E-14 99.6 6.2 131 294-430 10-147 (175)
31 COG4886 Leucine-rich repeat (L 98.8 6.4E-09 1.4E-13 112.7 5.9 169 302-490 115-285 (394)
32 COG4886 Leucine-rich repeat (L 98.8 6.3E-09 1.4E-13 112.8 5.8 104 328-433 114-219 (394)
33 KOG3207 Beta-tubulin folding c 98.7 2.6E-09 5.6E-14 107.8 1.4 135 327-474 143-285 (505)
34 KOG4341 F-box protein containi 98.7 1.4E-09 3.1E-14 109.0 -2.3 144 519-666 293-441 (483)
35 KOG1259 Nischarin, modulator o 98.7 2.2E-09 4.7E-14 102.7 -1.6 124 280-408 283-409 (490)
36 KOG3207 Beta-tubulin folding c 98.6 9.4E-09 2E-13 103.8 1.0 191 279-477 119-318 (505)
37 PLN03150 hypothetical protein; 98.5 2.6E-07 5.6E-12 104.9 9.0 105 331-436 419-528 (623)
38 PLN03150 hypothetical protein; 98.5 2.4E-07 5.1E-12 105.2 8.6 104 354-471 419-526 (623)
39 KOG4341 F-box protein containi 98.5 5.3E-09 1.2E-13 105.0 -4.7 114 541-658 344-459 (483)
40 PF13855 LRR_8: Leucine rich r 98.4 3.1E-07 6.7E-12 69.4 3.7 56 331-386 2-60 (61)
41 PF13855 LRR_8: Leucine rich r 98.4 4.3E-07 9.4E-12 68.6 4.1 60 303-365 1-61 (61)
42 KOG2120 SCF ubiquitin ligase, 98.4 1.3E-08 2.8E-13 97.6 -5.3 83 354-436 186-273 (419)
43 KOG0531 Protein phosphatase 1, 98.3 8.4E-08 1.8E-12 104.1 -1.8 128 302-436 71-199 (414)
44 KOG0531 Protein phosphatase 1, 98.3 1.1E-07 2.3E-12 103.3 -1.2 121 283-408 74-196 (414)
45 KOG1909 Ran GTPase-activating 98.2 2.8E-07 6E-12 90.9 0.7 94 540-636 210-309 (382)
46 PRK04841 transcriptional regul 98.1 5.4E-05 1.2E-09 91.8 18.2 213 17-257 106-332 (903)
47 KOG1909 Ran GTPase-activating 98.1 5.2E-07 1.1E-11 89.0 -0.0 161 301-471 28-224 (382)
48 KOG1859 Leucine-rich repeat pr 98.1 9E-08 2E-12 102.5 -6.8 127 331-473 165-292 (1096)
49 KOG2120 SCF ubiquitin ligase, 98.0 5.8E-07 1.3E-11 86.5 -1.9 173 281-470 185-373 (419)
50 PF12799 LRR_4: Leucine Rich r 98.0 5.5E-06 1.2E-10 57.1 3.3 37 331-367 2-38 (44)
51 KOG3665 ZYG-1-like serine/thre 98.0 2.3E-06 5E-11 96.8 2.1 147 280-429 121-281 (699)
52 KOG2982 Uncharacterized conser 98.0 8.7E-07 1.9E-11 85.3 -1.6 82 327-408 68-156 (418)
53 PRK15386 type III secretion pr 97.9 5E-05 1.1E-09 79.1 9.8 32 519-552 155-186 (426)
54 PF12799 LRR_4: Leucine Rich r 97.9 2E-05 4.3E-10 54.3 4.0 33 376-408 2-34 (44)
55 KOG1859 Leucine-rich repeat pr 97.8 9.3E-07 2E-11 95.0 -5.2 121 283-408 166-289 (1096)
56 PRK15386 type III secretion pr 97.7 0.00012 2.6E-09 76.3 8.4 18 329-346 51-68 (426)
57 KOG3665 ZYG-1-like serine/thre 97.7 2.4E-05 5.1E-10 88.7 3.4 134 302-436 121-263 (699)
58 KOG2982 Uncharacterized conser 97.6 1.6E-05 3.6E-10 76.7 1.1 83 374-470 70-156 (418)
59 KOG4579 Leucine-rich repeat (L 97.6 4.3E-06 9.2E-11 71.2 -2.9 88 302-392 52-140 (177)
60 KOG4579 Leucine-rich repeat (L 97.4 1.6E-05 3.6E-10 67.8 -1.6 89 327-416 50-140 (177)
61 TIGR03015 pepcterm_ATPase puta 97.4 0.0047 1E-07 63.0 15.9 131 2-133 90-242 (269)
62 COG5238 RNA1 Ran GTPase-activa 97.4 3.2E-05 6.9E-10 73.8 -0.5 86 329-415 29-136 (388)
63 KOG1644 U2-associated snRNP A' 97.3 0.0004 8.6E-09 63.8 5.1 81 327-407 61-149 (233)
64 KOG1644 U2-associated snRNP A' 97.0 0.00094 2E-08 61.4 4.9 101 331-433 43-150 (233)
65 KOG1947 Leucine rich repeat pr 96.8 0.00018 3.9E-09 80.5 -1.8 35 629-665 380-415 (482)
66 COG2909 MalT ATP-dependent tra 96.4 0.012 2.7E-07 65.9 9.1 214 17-259 114-340 (894)
67 KOG2123 Uncharacterized conser 96.4 0.00021 4.6E-09 68.6 -3.8 100 329-429 18-123 (388)
68 KOG2739 Leucine-rich acidic nu 96.4 0.0027 5.9E-08 61.1 3.2 57 329-385 64-126 (260)
69 KOG2123 Uncharacterized conser 96.4 0.00034 7.3E-09 67.3 -2.9 98 301-404 17-123 (388)
70 KOG1947 Leucine rich repeat pr 96.3 0.00079 1.7E-08 75.3 -0.9 124 541-666 186-310 (482)
71 PF05729 NACHT: NACHT domain 96.3 0.011 2.4E-07 55.0 6.8 74 26-99 76-163 (166)
72 KOG2739 Leucine-rich acidic nu 96.1 0.0036 7.9E-08 60.3 2.9 88 279-367 41-130 (260)
73 PRK06893 DNA replication initi 96.1 0.01 2.2E-07 58.5 6.0 99 31-130 91-204 (229)
74 COG5238 RNA1 Ran GTPase-activa 95.9 0.007 1.5E-07 58.3 3.5 87 349-435 26-132 (388)
75 PF00560 LRR_1: Leucine Rich R 95.8 0.0037 8.1E-08 35.6 0.8 21 376-396 1-21 (22)
76 PF01637 Arch_ATPase: Archaeal 95.6 0.049 1.1E-06 53.9 8.4 111 17-128 103-233 (234)
77 PF00560 LRR_1: Leucine Rich R 95.3 0.0055 1.2E-07 35.0 0.2 21 331-351 1-21 (22)
78 KOG3864 Uncharacterized conser 95.0 0.0028 6.1E-08 58.5 -2.3 70 594-665 121-190 (221)
79 PF13306 LRR_5: Leucine rich r 94.6 0.097 2.1E-06 46.2 6.7 115 301-425 10-128 (129)
80 COG3903 Predicted ATPase [Gene 94.0 0.074 1.6E-06 55.1 5.0 228 20-258 78-315 (414)
81 PF13306 LRR_5: Leucine rich r 94.0 0.15 3.4E-06 44.9 6.6 107 320-432 2-112 (129)
82 PRK00411 cdc6 cell division co 93.9 2.1 4.6E-05 46.3 16.6 214 2-236 105-357 (394)
83 PF13504 LRR_7: Leucine rich r 93.8 0.043 9.2E-07 29.0 1.4 16 376-391 2-17 (17)
84 PRK00080 ruvB Holliday junctio 93.7 1.1 2.5E-05 46.9 13.4 122 59-193 151-275 (328)
85 KOG3864 Uncharacterized conser 93.7 0.0099 2.1E-07 55.0 -1.8 71 622-706 122-192 (221)
86 TIGR00635 ruvB Holliday juncti 92.9 7.8 0.00017 40.1 18.2 72 59-131 130-203 (305)
87 PF13504 LRR_7: Leucine rich r 92.8 0.069 1.5E-06 28.1 1.3 16 331-346 2-17 (17)
88 PF13173 AAA_14: AAA domain 92.1 0.2 4.2E-06 44.3 4.3 62 30-91 60-127 (128)
89 COG3899 Predicted ATPase [Gene 92.1 2.3 5E-05 50.5 14.2 172 22-202 145-332 (849)
90 PF14516 AAA_35: AAA-like doma 91.6 3.1 6.7E-05 43.6 13.1 54 78-136 193-246 (331)
91 PRK13342 recombination factor 90.9 5.1 0.00011 43.5 14.4 101 29-132 90-199 (413)
92 KOG0473 Leucine-rich repeat pr 90.4 0.012 2.6E-07 55.4 -5.3 81 328-408 40-121 (326)
93 KOG0473 Leucine-rich repeat pr 90.3 0.011 2.3E-07 55.8 -5.8 91 344-436 32-124 (326)
94 TIGR03420 DnaA_homol_Hda DnaA 90.2 0.68 1.5E-05 45.6 6.5 97 33-130 92-202 (226)
95 PRK09087 hypothetical protein; 89.8 1.1 2.5E-05 43.8 7.5 95 33-128 89-194 (226)
96 PRK07471 DNA polymerase III su 89.7 1.3 2.9E-05 46.7 8.5 105 20-129 126-238 (365)
97 smart00369 LRR_TYP Leucine-ric 89.0 0.35 7.6E-06 28.7 2.1 19 375-393 2-20 (26)
98 smart00370 LRR Leucine-rich re 89.0 0.35 7.6E-06 28.7 2.1 19 375-393 2-20 (26)
99 TIGR00678 holB DNA polymerase 87.9 2 4.3E-05 40.9 7.6 89 30-125 95-187 (188)
100 TIGR02928 orc1/cdc6 family rep 86.5 49 0.0011 35.2 21.5 125 2-126 94-243 (365)
101 PRK05564 DNA polymerase III su 86.4 3.1 6.7E-05 43.3 8.7 92 31-127 93-188 (313)
102 TIGR02903 spore_lon_C ATP-depe 86.0 3.4 7.3E-05 47.2 9.3 113 18-132 280-398 (615)
103 PRK08727 hypothetical protein; 86.0 3.2 7E-05 41.0 8.1 95 31-126 93-201 (233)
104 PRK06645 DNA polymerase III su 85.2 4.8 0.0001 44.6 9.6 96 30-126 127-226 (507)
105 PRK09112 DNA polymerase III su 84.7 4.8 0.0001 42.4 9.1 107 20-129 126-240 (351)
106 smart00369 LRR_TYP Leucine-ric 84.3 0.77 1.7E-05 27.2 1.8 19 330-348 2-20 (26)
107 smart00370 LRR Leucine-rich re 84.3 0.77 1.7E-05 27.2 1.8 19 330-348 2-20 (26)
108 PRK08084 DNA replication initi 83.4 3.1 6.8E-05 41.1 6.7 96 33-129 99-209 (235)
109 KOG0989 Replication factor C, 82.8 2.6 5.7E-05 42.1 5.7 90 33-123 131-224 (346)
110 smart00367 LRR_CC Leucine-rich 81.4 0.82 1.8E-05 27.2 1.1 17 625-641 2-18 (26)
111 PRK07003 DNA polymerase III su 81.2 4.5 9.7E-05 46.4 7.5 98 30-128 118-220 (830)
112 PRK14963 DNA polymerase III su 79.6 10 0.00023 42.0 9.7 96 30-126 115-214 (504)
113 PRK05642 DNA replication initi 79.3 5.2 0.00011 39.5 6.6 93 34-129 100-208 (234)
114 PRK14961 DNA polymerase III su 79.2 10 0.00022 40.3 9.3 97 30-127 118-218 (363)
115 PF13401 AAA_22: AAA domain; P 78.6 3.7 8.1E-05 36.0 5.0 65 2-68 57-125 (131)
116 TIGR01242 26Sp45 26S proteasom 78.3 15 0.00032 39.1 10.3 101 21-123 205-328 (364)
117 COG2256 MGS1 ATPase related to 77.8 54 0.0012 34.6 13.2 155 20-178 93-266 (436)
118 PF00308 Bac_DnaA: Bacterial d 77.3 3.7 8.1E-05 40.0 4.8 94 31-127 97-206 (219)
119 PRK05707 DNA polymerase III su 77.0 14 0.0003 38.6 9.1 95 30-129 105-203 (328)
120 PRK12402 replication factor C 76.8 17 0.00036 38.2 10.1 97 31-128 125-225 (337)
121 PRK12323 DNA polymerase III su 76.0 9.8 0.00021 43.0 8.0 98 30-128 123-224 (700)
122 PRK06620 hypothetical protein; 75.4 10 0.00022 36.8 7.3 91 32-126 86-186 (214)
123 PRK14087 dnaA chromosomal repl 75.4 9.8 0.00021 41.7 7.9 100 31-130 206-320 (450)
124 TIGR02397 dnaX_nterm DNA polym 75.1 14 0.0003 39.2 9.0 100 30-130 116-219 (355)
125 PRK08903 DnaA regulatory inact 75.0 8.7 0.00019 37.7 6.9 101 32-133 91-203 (227)
126 PRK07940 DNA polymerase III su 74.3 17 0.00036 39.0 9.2 93 30-128 116-212 (394)
127 PRK14960 DNA polymerase III su 72.8 18 0.00038 41.2 9.1 97 30-127 117-217 (702)
128 PRK14956 DNA polymerase III su 71.5 17 0.00036 39.8 8.3 96 30-126 120-219 (484)
129 PRK14957 DNA polymerase III su 70.9 17 0.00038 40.6 8.6 99 30-129 118-221 (546)
130 PRK14949 DNA polymerase III su 70.1 20 0.00044 42.2 9.0 99 30-129 118-220 (944)
131 COG1373 Predicted ATPase (AAA+ 68.9 13 0.00028 40.0 7.0 63 31-94 94-162 (398)
132 PLN03025 replication factor C 68.5 10 0.00022 39.5 5.9 96 30-126 98-197 (319)
133 PRK14959 DNA polymerase III su 68.0 25 0.00055 39.8 9.1 103 30-133 118-225 (624)
134 KOG4308 LRR-containing protein 67.3 0.13 2.8E-06 56.2 -8.7 133 331-473 145-303 (478)
135 smart00364 LRR_BAC Leucine-ric 66.9 3.5 7.6E-05 24.5 1.1 17 376-392 3-19 (26)
136 PRK14086 dnaA chromosomal repl 66.8 38 0.00081 38.4 10.0 89 34-123 380-482 (617)
137 PF13516 LRR_6: Leucine Rich r 64.0 2.5 5.4E-05 24.4 0.2 9 377-385 4-12 (24)
138 PRK00440 rfc replication facto 62.5 27 0.00058 36.3 7.8 96 31-127 102-201 (319)
139 TIGR02880 cbbX_cfxQ probable R 62.1 40 0.00086 34.4 8.6 69 31-99 121-208 (284)
140 PRK14955 DNA polymerase III su 62.0 22 0.00049 38.3 7.2 95 30-127 126-226 (397)
141 PRK07764 DNA polymerase III su 61.6 36 0.00077 40.4 9.1 96 30-126 119-218 (824)
142 PRK08451 DNA polymerase III su 61.4 42 0.0009 37.5 9.1 99 30-129 116-218 (535)
143 PRK07994 DNA polymerase III su 61.3 31 0.00066 39.5 8.2 99 30-129 118-220 (647)
144 PRK08691 DNA polymerase III su 60.5 24 0.00051 40.5 7.1 97 30-127 118-218 (709)
145 PRK13341 recombination factor 59.8 1.8E+02 0.004 34.0 14.3 93 30-125 108-213 (725)
146 smart00365 LRR_SD22 Leucine-ri 59.7 6.9 0.00015 23.3 1.5 15 375-389 2-16 (26)
147 PRK14951 DNA polymerase III su 59.2 47 0.001 37.9 9.2 97 30-127 123-223 (618)
148 PRK06090 DNA polymerase III su 59.1 57 0.0012 33.8 9.1 91 30-129 107-201 (319)
149 PRK06871 DNA polymerase III su 58.6 67 0.0014 33.4 9.6 91 30-126 106-200 (325)
150 PRK14962 DNA polymerase III su 57.2 41 0.00089 37.1 8.2 100 30-132 116-222 (472)
151 PTZ00112 origin recognition co 56.8 2.1E+02 0.0046 34.1 13.6 129 2-133 836-986 (1164)
152 TIGR00362 DnaA chromosomal rep 56.3 1.1E+02 0.0023 33.2 11.3 93 33-126 201-307 (405)
153 PRK07399 DNA polymerase III su 55.2 64 0.0014 33.4 8.9 105 20-128 109-220 (314)
154 PRK04195 replication factor C 55.2 2.8E+02 0.0062 30.8 14.6 99 31-134 98-207 (482)
155 COG0593 DnaA ATPase involved i 54.5 1.3E+02 0.0027 32.4 10.9 66 34-99 178-257 (408)
156 PRK06964 DNA polymerase III su 51.3 73 0.0016 33.4 8.5 101 19-128 116-224 (342)
157 PRK07133 DNA polymerase III su 51.1 93 0.002 36.1 9.9 106 20-126 103-216 (725)
158 PRK14950 DNA polymerase III su 50.9 73 0.0016 36.4 9.2 99 30-129 119-221 (585)
159 PRK14970 DNA polymerase III su 50.8 55 0.0012 34.9 7.9 96 30-126 107-206 (367)
160 PRK06305 DNA polymerase III su 50.6 80 0.0017 34.7 9.2 94 30-124 120-217 (451)
161 PRK09111 DNA polymerase III su 50.3 78 0.0017 36.1 9.2 98 30-128 131-232 (598)
162 PRK14971 DNA polymerase III su 50.2 72 0.0016 36.6 9.0 96 30-126 120-219 (614)
163 PRK14964 DNA polymerase III su 49.8 67 0.0014 35.5 8.3 96 30-126 115-214 (491)
164 KOG4308 LRR-containing protein 48.2 0.45 9.8E-06 52.1 -8.6 159 303-471 144-329 (478)
165 PRK08769 DNA polymerase III su 47.1 85 0.0018 32.6 8.2 92 30-128 112-207 (319)
166 PRK03992 proteasome-activating 47.0 1.1E+02 0.0024 32.8 9.5 102 19-122 212-336 (389)
167 cd00561 CobA_CobO_BtuR ATP:cor 46.6 33 0.00071 31.4 4.5 51 20-70 84-139 (159)
168 PRK14954 DNA polymerase III su 46.5 87 0.0019 35.9 8.8 92 30-124 126-223 (620)
169 PRK14952 DNA polymerase III su 46.2 1E+02 0.0022 35.0 9.2 102 30-132 117-223 (584)
170 PRK00149 dnaA chromosomal repl 46.2 1.8E+02 0.004 31.9 11.2 115 32-149 212-349 (450)
171 PF02463 SMC_N: RecF/RecN/SMC 44.8 12 0.00025 36.5 1.5 46 31-76 158-206 (220)
172 PRK14958 DNA polymerase III su 44.7 65 0.0014 36.0 7.4 97 30-127 118-218 (509)
173 smart00368 LRR_RI Leucine rich 42.5 19 0.00042 21.7 1.6 12 331-342 3-14 (28)
174 PRK07993 DNA polymerase III su 41.8 97 0.0021 32.4 7.8 102 19-126 92-201 (334)
175 PRK14953 DNA polymerase III su 40.9 1.8E+02 0.0039 32.3 10.0 99 30-129 118-220 (486)
176 CHL00181 cbbX CbbX; Provisiona 40.2 1.8E+02 0.0039 29.7 9.3 69 31-99 122-209 (287)
177 PRK14948 DNA polymerase III su 39.4 1.7E+02 0.0038 33.6 9.9 99 30-129 120-222 (620)
178 PF07693 KAP_NTPase: KAP famil 39.1 2.5E+02 0.0054 29.1 10.6 80 17-98 157-262 (325)
179 PRK05896 DNA polymerase III su 38.8 1.3E+02 0.0028 34.1 8.5 97 31-130 119-222 (605)
180 COG1474 CDC6 Cdc6-related prot 38.7 4.5E+02 0.0098 27.9 12.2 124 2-128 92-237 (366)
181 PRK14969 DNA polymerase III su 38.4 74 0.0016 35.8 6.6 95 30-125 118-216 (527)
182 PRK04132 replication factor C 37.4 1.8E+02 0.004 34.6 9.7 98 31-129 630-731 (846)
183 KOG3763 mRNA export factor TAP 37.2 12 0.00026 40.8 0.2 89 519-607 217-310 (585)
184 TIGR02881 spore_V_K stage V sp 35.8 1.7E+02 0.0036 29.4 8.3 68 32-99 106-191 (261)
185 PRK06647 DNA polymerase III su 35.3 2.6E+02 0.0057 31.7 10.4 98 30-128 118-219 (563)
186 PRK14088 dnaA chromosomal repl 34.6 1.5E+02 0.0033 32.4 8.3 92 32-126 195-302 (440)
187 KOG2227 Pre-initiation complex 33.7 3E+02 0.0066 29.9 9.6 105 17-121 241-360 (529)
188 KOG0741 AAA+-type ATPase [Post 32.7 2.2E+02 0.0047 31.5 8.4 103 15-119 579-704 (744)
189 PRK12422 chromosomal replicati 32.6 78 0.0017 34.7 5.5 89 31-122 202-306 (445)
190 PF06144 DNA_pol3_delta: DNA p 32.2 1.1E+02 0.0023 28.2 5.8 96 30-126 56-163 (172)
191 PRK05563 DNA polymerase III su 31.1 2.9E+02 0.0063 31.4 9.9 96 30-126 118-217 (559)
192 TIGR01241 FtsH_fam ATP-depende 30.8 3.5E+02 0.0076 30.2 10.5 101 20-122 136-259 (495)
193 PRK14965 DNA polymerase III su 29.9 1.1E+02 0.0023 35.0 6.2 109 20-129 104-221 (576)
194 COG3267 ExeA Type II secretory 28.5 5.6E+02 0.012 25.6 9.8 113 18-130 117-246 (269)
195 TIGR01128 holA DNA polymerase 28.4 2.7E+02 0.0059 28.4 8.7 94 30-126 45-150 (302)
196 KOG3763 mRNA export factor TAP 27.7 19 0.0004 39.4 -0.3 87 480-578 216-310 (585)
197 PHA02544 44 clamp loader, smal 26.9 1.7E+02 0.0036 30.3 6.8 67 31-97 100-171 (316)
198 PRK07414 cob(I)yrinic acid a,c 25.8 94 0.002 29.0 4.0 50 20-69 104-158 (178)
199 cd00009 AAA The AAA+ (ATPases 24.7 95 0.0021 27.1 3.9 40 30-69 83-130 (151)
200 CHL00176 ftsH cell division pr 22.8 5.4E+02 0.012 29.8 10.2 100 20-121 264-386 (638)
201 PRK05986 cob(I)alamin adenolsy 22.7 1.4E+02 0.0029 28.3 4.4 51 19-69 103-158 (191)
202 PTZ00454 26S protease regulato 22.6 3.6E+02 0.0078 29.1 8.3 103 19-123 226-351 (398)
203 TIGR00708 cobA cob(I)alamin ad 20.8 1.2E+02 0.0025 28.3 3.6 51 19-69 85-140 (173)
204 PRK08058 DNA polymerase III su 20.3 3.7E+02 0.008 28.1 7.7 68 30-97 109-180 (329)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1e-67 Score=599.67 Aligned_cols=596 Identities=28% Similarity=0.400 Sum_probs=430.4
Q ss_pred ChHHHHhCCCCcc---ccHHHHHHHHHHHHhcCCcEEEEEEcCCCchhhhhccccCCCCCCCcEEEEEeCChHHHhh-cC
Q 042822 1 MEIAEQIGLTLDK---ETEHARASMLYAQLKKSRKILVILDNVWTELHLKDVGIPFGDEHKGCKVLLTTRGRDLLSR-MG 76 (775)
Q Consensus 1 ~~i~~~l~~~~~~---~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTTR~~~v~~~-~~ 76 (775)
++|+..+|..... ...++.+..|.+.|+ +|||+|||||||+..+|+.|+.++|...+||||++|||++.|+.. ++
T Consensus 229 ~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~-~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~ 307 (889)
T KOG4658|consen 229 QTILERLGLLDEEWEDKEEDELASKLLNLLE-GKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMG 307 (889)
T ss_pred HHHHHHhccCCcccchhhHHHHHHHHHHHhc-cCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhcccc
Confidence 4789999884433 334688899999998 799999999999999999999999999999999999999999998 88
Q ss_pred CCceEEcCCCCHHHHHHHHHHHhCCC--CCcchhhHHHHHHHHHhCCCchhHHHHHHHHhcCCcHHHHHHHHHHhcCCCc
Q 042822 77 SEADVRMDILNEEEAWRLFEVKLGND--GLIRRMKSTATQIVKQCGGLPIALEPIAKALRNKTESECWKNALHELRMPTE 154 (775)
Q Consensus 77 ~~~~~~l~~L~~~~~~~Lf~~~a~~~--~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~~w~~~l~~l~~~~~ 154 (775)
+...+++++|+.+|||+||++.|+.. ...+.++++|++|+++|+|+|||++++|+.|+.|.+.++|+++.+.+.....
T Consensus 308 ~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~ 387 (889)
T KOG4658|consen 308 VDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLA 387 (889)
T ss_pred CCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcccccccc
Confidence 88999999999999999999999543 3445589999999999999999999999999999988889999999877644
Q ss_pred CcchhhhhhHHHHHHhhHhccCchhHHHHHHhcCCCCCCCChh--hHHHHHhhccccccc-cHHHHHHHHHHHHHHHHHc
Q 042822 155 NNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMPKSFFAS--DLFKYCIGLGIFRGI-NMEDARNTLYTLVHELKDS 231 (775)
Q Consensus 155 ~~~~~~~~~~~~~l~~sy~~L~~~~lk~cf~~~~~fp~~~~~~--~li~~w~a~g~i~~~-~~~~~~~~~~~~~~~L~~~ 231 (775)
.+.....+.+++++++|||.||++ +|.||+|||+||+|+.|+ +|+.+||||||+.+. ..+.+++.+++++.+|+++
T Consensus 388 ~~~~~~~~~i~~iLklSyd~L~~~-lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~ 466 (889)
T KOG4658|consen 388 ADFSGMEESILPILKLSYDNLPEE-LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRA 466 (889)
T ss_pred CCCCchhhhhHHhhhccHhhhhHH-HHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHH
Confidence 444333458999999999999965 999999999999999998 999999999999885 5666899999999999999
Q ss_pred cceeccc---ccceEEehHHHHHHHHHHHh-----ccCceEEeecCCccCCCCcccccceeEEEEEcCCCCCCCCCCCCC
Q 042822 232 CLLLEGY---SCREFSMHDVVHDVAILIAC-----GEQKEFLVRNGDVWEWPDKDALKKCYAISWIDSSGGELPEGLECP 303 (775)
Q Consensus 232 sl~~~~~---~~~~~~mHdlv~~l~~~~~~-----~e~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~lp~~~~~~ 303 (775)
+++..+. ...+|+|||+||++|.+++. +++.+.... ......+....+..+|++++.++.+..++....++
T Consensus 467 ~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~-~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~ 545 (889)
T KOG4658|consen 467 SLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDG-VGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENP 545 (889)
T ss_pred HHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECC-cCccccccccchhheeEEEEeccchhhccCCCCCC
Confidence 9998765 34679999999999999998 666433322 24444566677889999999999999999999999
Q ss_pred CccEEEcccCCC-CCccccChhhhhCCCcccEEEecCCC-CCCCCcccccccCccEEEcCCCCCCC-ccccccCCcccEE
Q 042822 304 QLELLLLSSKHS-SVDVNIPRSFFTGMRELKVVDLTNMQ-LFSLPSSIDLLLNLRTLCLDHGTLGD-ITIIGELKNLEIL 380 (775)
Q Consensus 304 ~Lr~L~l~~~~~-~~~~~l~~~~~~~l~~L~~L~l~~~~-~~~lp~~i~~l~~L~~L~L~~~~l~~-p~~i~~l~~L~~L 380 (775)
+|++|.+.+|.. .. .++..+|..++.||+|||++|. +.++|.+|++|.|||||+++++.++. |.++++|+.|++|
T Consensus 546 ~L~tLll~~n~~~l~--~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLL--EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYL 623 (889)
T ss_pred ccceEEEeecchhhh--hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhee
Confidence 999999999863 22 6788889999999999999764 55899999999999999999998888 8888888888888
Q ss_pred EecCC-CCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccceecccCCccccccccccccCCC
Q 042822 381 SLIGS-DIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPL 459 (775)
Q Consensus 381 ~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l 459 (775)
++..+ .+..+|..+..|++||+|.+.... . ......++.+.+|++|..-.+.... ...++.+..+
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~-~~~~~~l~el~~Le~L~~ls~~~~s------------~~~~e~l~~~ 689 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSA-L-SNDKLLLKELENLEHLENLSITISS------------VLLLEDLLGM 689 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccc-c-ccchhhHHhhhcccchhhheeecch------------hHhHhhhhhh
Confidence 88887 344555556668888888876532 1 1111113333333333322221110 0112223333
Q ss_pred CCCCEEEE----EeeCCCCCCC-ccccccccceEEEecCCCCCCccccccccccccccccccccccccceEEEeccCccc
Q 042822 460 PRLTTLEI----AVENDNALPE-GFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNCKTI 534 (775)
Q Consensus 460 ~~L~~L~l----~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 534 (775)
++|+++.. .+......+. ... +.+|+.|.+..+....
T Consensus 690 ~~L~~~~~~l~~~~~~~~~~~~~~~~--------------------------------------l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 690 TRLRSLLQSLSIEGCSKRTLISSLGS--------------------------------------LGNLEELSILDCGISE 731 (889)
T ss_pred HHHHHHhHhhhhcccccceeeccccc--------------------------------------ccCcceEEEEcCCCch
Confidence 33332111 1111111111 112 4444444444433221
Q ss_pred ccc-cc-----c-ccccceEEeecccCCcccccccccccccccCcEEEeecCCCccccccCCCcc-----cCCcccccce
Q 042822 535 CSR-KL-----Q-GIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIV-----DCDAFPLLEL 602 (775)
Q Consensus 535 ~~~-~l-----~-~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~-----~~~~~p~L~~ 602 (775)
... +. . .++++..+.+.+|....+..+... .|+|+.|.+..|..++.+.+..... ....|.+++.
T Consensus 732 ~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f---~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~ 808 (889)
T KOG4658|consen 732 IVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLF---APHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEG 808 (889)
T ss_pred hhcccccccchhhhHHHHHHHHhhccccccccchhhc---cCcccEEEEecccccccCCCHHHHhhhcccEEeccccccc
Confidence 100 10 0 145555555666655554433322 3667777777766666553322111 1234566666
Q ss_pred e-ecccccccccccccccCcccccCCCeEEeccCCCCCccccchhhcCCCCccEEEEecc-cchHHHh
Q 042822 603 L-SLQNLINLKTICVDRLSTESFAELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKC-NKMKEIF 668 (775)
Q Consensus 603 L-~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C-~~L~~l~ 668 (775)
+ .+.+.+.+.++...+.. ++.|+.+.+..||++..+ |.+.++.+.+| +.+...+
T Consensus 809 l~~~~~l~~l~~i~~~~l~---~~~l~~~~ve~~p~l~~~---------P~~~~~~i~~~~~~~~~~~ 864 (889)
T KOG4658|consen 809 LRMLCSLGGLPQLYWLPLS---FLKLEELIVEECPKLGKL---------PLLSTLTIVGCEEKLKEYP 864 (889)
T ss_pred ceeeecCCCCceeEecccC---ccchhheehhcCcccccC---------ccccccceeccccceeecC
Confidence 6 46666667766544443 556888888888887764 44566666675 5555443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.1e-57 Score=548.13 Aligned_cols=613 Identities=20% Similarity=0.260 Sum_probs=412.8
Q ss_pred HHHHHHHhcCCcEEEEEEcCCCchhhhhccccCCCCCCCcEEEEEeCChHHHhhcCCCceEEcCCCCHHHHHHHHHHHhC
Q 042822 21 SMLYAQLKKSRKILVILDNVWTELHLKDVGIPFGDEHKGCKVLLTTRGRDLLSRMGSEADVRMDILNEEEAWRLFEVKLG 100 (775)
Q Consensus 21 ~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTTR~~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~ 100 (775)
..+++++. +||+||||||||+.++|+.+.....+.+.||+||||||+++++..++..++|+|+.|+.++||+||+++|+
T Consensus 287 ~~~~~~L~-~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 287 GAMEERLK-HRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAF 365 (1153)
T ss_pred HHHHHHHh-CCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhc
Confidence 45677776 79999999999999999998877777789999999999999998888889999999999999999999995
Q ss_pred C-CCCcchhhHHHHHHHHHhCCCchhHHHHHHHHhcCCcHHHHHHHHHHhcCCCcCcchhhhhhHHHHHHhhHhccCchh
Q 042822 101 N-DGLIRRMKSTATQIVKQCGGLPIALEPIAKALRNKTESECWKNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQ 179 (775)
Q Consensus 101 ~-~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~ 179 (775)
. ..+++++.+++++|+++|+|+||||+++|++|++++. .+|+++++++.... .. ++..+|++||++|+++.
T Consensus 366 ~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~-~~W~~~l~~L~~~~----~~---~I~~~L~~SYd~L~~~~ 437 (1153)
T PLN03210 366 KKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDK-EDWMDMLPRLRNGL----DG---KIEKTLRVSYDGLNNKK 437 (1153)
T ss_pred CCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCH-HHHHHHHHHHHhCc----cH---HHHHHHHHhhhccCccc
Confidence 4 4455678999999999999999999999999999865 55999999986532 12 68889999999998643
Q ss_pred HHHHHHhcCCCCCCCChhhHHHHHhhccccccccHHHHHHHHHHHHHHHHHccceecccccceEEehHHHHHHHHHHHhc
Q 042822 180 LKKIFQLCSLMPKSFFASDLFKYCIGLGIFRGINMEDARNTLYTLVHELKDSCLLLEGYSCREFSMHDVVHDVAILIACG 259 (775)
Q Consensus 180 lk~cf~~~~~fp~~~~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~L~~~sl~~~~~~~~~~~mHdlv~~l~~~~~~~ 259 (775)
.|.||+++|+||.+..++. +..|.+.+.... ..-++.|++++|++.. .+.++|||++|+||+.++++
T Consensus 438 ~k~~Fl~ia~ff~~~~~~~-v~~~l~~~~~~~----------~~~l~~L~~ksLi~~~--~~~~~MHdLl~~~~r~i~~~ 504 (1153)
T PLN03210 438 DKAIFRHIACLFNGEKVND-IKLLLANSDLDV----------NIGLKNLVDKSLIHVR--EDIVEMHSLLQEMGKEIVRA 504 (1153)
T ss_pred hhhhhheehhhcCCCCHHH-HHHHHHhcCCCc----------hhChHHHHhcCCEEEc--CCeEEhhhHHHHHHHHHHHh
Confidence 5999999999999987764 555666543321 1128889999999764 35799999999999999876
Q ss_pred cCc-----eEEeecCCccC-CCCcccccceeEEEEEcCCCC---------------------------------CCCCCC
Q 042822 260 EQK-----EFLVRNGDVWE-WPDKDALKKCYAISWIDSSGG---------------------------------ELPEGL 300 (775)
Q Consensus 260 e~~-----~~~~~~~~~~~-~~~~~~~~~~~~l~l~~~~~~---------------------------------~lp~~~ 300 (775)
+.. .+.+...+... ........+++.+++..+... .+|..+
T Consensus 505 ~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~ 584 (1153)
T PLN03210 505 QSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGF 584 (1153)
T ss_pred hcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcch
Confidence 531 01110000000 000111123333333222221 223322
Q ss_pred -CC-CCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEEEcCCCC-CCCccccccCCcc
Q 042822 301 -EC-PQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGT-LGDITIIGELKNL 377 (775)
Q Consensus 301 -~~-~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~-l~~p~~i~~l~~L 377 (775)
.+ ++||.|.+.++... .+|..+ ...+|+.|+++++.+..+|..+..+++|++|+++++. ++.++.++.+++|
T Consensus 585 ~~lp~~Lr~L~~~~~~l~---~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~L 659 (1153)
T PLN03210 585 DYLPPKLRLLRWDKYPLR---CMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNL 659 (1153)
T ss_pred hhcCcccEEEEecCCCCC---CCCCcC--CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcc
Confidence 11 34666666655544 455543 4567777777777777777777777777888777765 4445567777778
Q ss_pred cEEEecCC-CCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccceecccCCcccccccccccc
Q 042822 378 EILSLIGS-DIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDEL 456 (775)
Q Consensus 378 ~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l 456 (775)
++|++++| .+..+|..++++++|++|++++|..++.+|.. + ++++|++|++++|......|
T Consensus 660 e~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~~p---------------- 721 (1153)
T PLN03210 660 ETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKSFP---------------- 721 (1153)
T ss_pred cEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCccccc----------------
Confidence 88888777 56677777777778888888777777777775 3 67777778777775443222
Q ss_pred CCCCCCCEEEEEeeCCCCCCCccccccccceEEEecCCCCCCccccccccccccccccccccccccceEEEeccC-cccc
Q 042822 457 MPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNC-KTIC 535 (775)
Q Consensus 457 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~ 535 (775)
...++|+.|+++++.+..+|....+++|+.|.+.......+. ... ....+.....+++|+.|+++++. ....
T Consensus 722 ~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~------~~~-~~l~~~~~~~~~sL~~L~Ls~n~~l~~l 794 (1153)
T PLN03210 722 DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLW------ERV-QPLTPLMTMLSPSLTRLFLSDIPSLVEL 794 (1153)
T ss_pred cccCCcCeeecCCCccccccccccccccccccccccchhhcc------ccc-cccchhhhhccccchheeCCCCCCcccc
Confidence 113567788888877777777666677776665432211110 000 00000111125677888887753 3446
Q ss_pred cccccccccceEEeecccCCcccccccccccccccCcEEEeecCCCccccccCCCcccCCcccccceeeccccccccccc
Q 042822 536 SRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKTIC 615 (775)
Q Consensus 536 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~ 615 (775)
|.+++.+++|+.|++++|..++.++... .+++|+.|++++|..++.+. ...++|+.|++.+. .++.+
T Consensus 795 P~si~~L~~L~~L~Ls~C~~L~~LP~~~---~L~sL~~L~Ls~c~~L~~~p--------~~~~nL~~L~Ls~n-~i~~i- 861 (1153)
T PLN03210 795 PSSIQNLHKLEHLEIENCINLETLPTGI---NLESLESLDLSGCSRLRTFP--------DISTNISDLNLSRT-GIEEV- 861 (1153)
T ss_pred ChhhhCCCCCCEEECCCCCCcCeeCCCC---CccccCEEECCCCCcccccc--------ccccccCEeECCCC-CCccC-
Confidence 7777778888888888887776665432 46778888888887665442 12357777877763 45655
Q ss_pred ccccCcccccCCCeEEeccCCCCCccccchhhcCCCCccEEEEecccchHHHhhccCCCCcccCCCCCCccccccccCeE
Q 042822 616 VDRLSTESFAELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVADNSNANEKIEFAQIRYL 695 (775)
Q Consensus 616 ~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L 695 (775)
|.....+++|+.|++.+|++++.+|. .+..+++|+.+++.+|++|+.+........... ........+|+...+
T Consensus 862 --P~si~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~--~~~n~~~~~p~~~~l 935 (1153)
T PLN03210 862 --PWWIEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGALTEASWNGSPSEVAM--ATDNIHSKLPSTVCI 935 (1153)
T ss_pred --hHHHhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCCcccccccCCCCchhhhh--hcccccccCCchhcc
Confidence 34456678888888888888888766 556778888888888888776532111000000 001111235555666
Q ss_pred ecCCCCCcc
Q 042822 696 SLGNLPELK 704 (775)
Q Consensus 696 ~l~~c~~L~ 704 (775)
.+.+|.+|.
T Consensus 936 ~f~nC~~L~ 944 (1153)
T PLN03210 936 NFINCFNLD 944 (1153)
T ss_pred ccccccCCC
Confidence 777776664
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.97 E-value=1.8e-31 Score=275.99 Aligned_cols=208 Identities=31% Similarity=0.536 Sum_probs=161.2
Q ss_pred hHHHHhCCCC----ccccHHHHHHHHHHHHhcCCcEEEEEEcCCCchhhhhccccCCCCCCCcEEEEEeCChHHHhhcCC
Q 042822 2 EIAEQIGLTL----DKETEHARASMLYAQLKKSRKILVILDNVWTELHLKDVGIPFGDEHKGCKVLLTTRGRDLLSRMGS 77 (775)
Q Consensus 2 ~i~~~l~~~~----~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTTR~~~v~~~~~~ 77 (775)
+|+++|+... ...+..+....+++.|. ++||||||||||+...|+.+...++..+.|++||||||+..|+..++.
T Consensus 69 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~-~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~ 147 (287)
T PF00931_consen 69 QILRQLGEPDSSISDPKDIEELQDQLRELLK-DKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGG 147 (287)
T ss_dssp HHHHHHTCC-STSSCCSSHHHHHHHHHHHHC-CTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHS
T ss_pred cccccccccccccccccccccccccchhhhc-cccceeeeeeeccccccccccccccccccccccccccccccccccccc
Confidence 5788888863 34577788999999997 689999999999999999998888888889999999999999887654
Q ss_pred -CceEEcCCCCHHHHHHHHHHHhCCCC--CcchhhHHHHHHHHHhCCCchhHHHHHHHHhcCCcHHHHHHHHHHhcCCCc
Q 042822 78 -EADVRMDILNEEEAWRLFEVKLGNDG--LIRRMKSTATQIVKQCGGLPIALEPIAKALRNKTESECWKNALHELRMPTE 154 (775)
Q Consensus 78 -~~~~~l~~L~~~~~~~Lf~~~a~~~~--~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~~w~~~l~~l~~~~~ 154 (775)
...|++++|+.+||++||++.++... ..+...+.+++|+++|+|+||||+++|++|+.+....+|+++++++.....
T Consensus 148 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~ 227 (287)
T PF00931_consen 148 TDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLR 227 (287)
T ss_dssp CEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 67999999999999999999995433 445667889999999999999999999999776455669999988655442
Q ss_pred CcchhhhhhHHHHHHhhHhccCchhHHHHHHhcCCCCCCCChh--hHHHHHhhccccccc
Q 042822 155 NNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMPKSFFAS--DLFKYCIGLGIFRGI 212 (775)
Q Consensus 155 ~~~~~~~~~~~~~l~~sy~~L~~~~lk~cf~~~~~fp~~~~~~--~li~~w~a~g~i~~~ 212 (775)
.. ......++.++.+||+.||++ +|+||+|||+||+++.|+ .++++|+++|+++..
T Consensus 228 ~~-~~~~~~~~~~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 228 ES-RDYDRSVFSALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp CS-SGSCHHHHHHHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cc-ccccccccccceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 21 112348999999999999997 799999999999999977 899999999998764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=1.1e-28 Score=298.43 Aligned_cols=151 Identities=25% Similarity=0.374 Sum_probs=77.8
Q ss_pred ceeEEEEEcCCCC-CCCCCC-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCC-CCCcccccccCccEE
Q 042822 282 KCYAISWIDSSGG-ELPEGL-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLF-SLPSSIDLLLNLRTL 358 (775)
Q Consensus 282 ~~~~l~l~~~~~~-~lp~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L 358 (775)
+++.|++.++.+. .++..+ .+++|++|++++|.... .+|.+++..+++|++|++++|.+. .+|. +.+++|++|
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~--~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSG--PIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCC--cCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence 4555555555543 222222 55566666666555443 455555555555666666555554 2332 344555555
Q ss_pred EcCCCCCCC--ccccccCCcccEEEecCCCCc-ccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcc
Q 042822 359 CLDHGTLGD--ITIIGELKNLEILSLIGSDIV-EFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFV 435 (775)
Q Consensus 359 ~L~~~~l~~--p~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 435 (775)
++++|.+.. |..++++++|++|++++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|++|++++|.+
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNL 224 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCcc
Confidence 555555443 444555555555555555443 45555555555555555555433444444 55555555555555554
Q ss_pred cc
Q 042822 436 EW 437 (775)
Q Consensus 436 ~~ 437 (775)
.+
T Consensus 225 ~~ 226 (968)
T PLN00113 225 SG 226 (968)
T ss_pred CC
Confidence 43
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=1.1e-28 Score=298.22 Aligned_cols=457 Identities=19% Similarity=0.158 Sum_probs=196.2
Q ss_pred ccceeEEEEEcCCCC-CCCCCC--CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCC-CCCcccccccCc
Q 042822 280 LKKCYAISWIDSSGG-ELPEGL--ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLF-SLPSSIDLLLNL 355 (775)
Q Consensus 280 ~~~~~~l~l~~~~~~-~lp~~~--~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L 355 (775)
.+.++.|++++|.+. .+|... .+++||+|++++|.... .+|. ..+++|++|++++|.+. .+|..++++++|
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~--~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 166 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG--SIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSL 166 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcccc--ccCc---cccCCCCEEECcCCcccccCChHHhcCCCC
Confidence 344555555555542 444432 45555555555555443 3332 23455555555555554 445555555555
Q ss_pred cEEEcCCCCCCC--ccccccCCcccEEEecCCCCc-ccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCC
Q 042822 356 RTLCLDHGTLGD--ITIIGELKNLEILSLIGSDIV-EFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSN 432 (775)
Q Consensus 356 ~~L~L~~~~l~~--p~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~ 432 (775)
++|++++|.+.. |..++++++|++|++++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|++|++++
T Consensus 167 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~ 245 (968)
T PLN00113 167 KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVY 245 (968)
T ss_pred CEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcC
Confidence 555555555433 444555555555555555444 44555555555555555555433344444 55555555555555
Q ss_pred CcccceecccCCccccccccccccCCCCCCCEEEEEeeCCC-CCCCcc-ccccccceEEEecCCCCC-Ccccccc---c-
Q 042822 433 CFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDN-ALPEGF-FVRELERFKILIGDRSFE-PPVILSK---D- 505 (775)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~l-~~l~~~~---~- 505 (775)
|.+.+..| ..++++++|+.|+++.|... .+|..+ .+.+|+.|++..+..... |.....+ .
T Consensus 246 n~l~~~~p-------------~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 312 (968)
T PLN00113 246 NNLTGPIP-------------SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI 312 (968)
T ss_pred ceeccccC-------------hhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcE
Confidence 54443333 33444444444444444322 222222 234444444433321110 0000000 0
Q ss_pred --ccc---ccccccccccccccceEEEeccCcc-cccccccccccceEEeecccCCcccccccccccccccCcEEEeecC
Q 042822 506 --WFR---ISRSHFLILDHQSLRMLKLKLNCKT-ICSRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNN 579 (775)
Q Consensus 506 --~~~---~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 579 (775)
... ....+..+..+++|+.|++.++... ..|.++..+++|+.|++++|......+..+ ..+++|+.|.+.++
T Consensus 313 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~--~~~~~L~~L~l~~n 390 (968)
T PLN00113 313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL--CSSGNLFKLILFSN 390 (968)
T ss_pred EECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH--hCcCCCCEEECcCC
Confidence 000 0000001112445555555443322 334444444555555555443322222211 12344444444443
Q ss_pred CCccccccCCCcccCCcccccceeecccccccccccccccCcccccCCCeEEeccCCCCCccccchhhcCCCCccEEEEe
Q 042822 580 PDLLFIVDSREIVDCDAFPLLELLSLQNLINLKTICVDRLSTESFAELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVI 659 (775)
Q Consensus 580 ~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~ 659 (775)
.-... .......+++|+.|++.+|.....+ +.....+++|+.|++++|.-...++. ....+++|+.|++.
T Consensus 391 ~l~~~-----~p~~~~~~~~L~~L~L~~n~l~~~~---p~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~ 460 (968)
T PLN00113 391 SLEGE-----IPKSLGACRSLRRVRLQDNSFSGEL---PSEFTKLPLVYFLDISNNNLQGRINS--RKWDMPSLQMLSLA 460 (968)
T ss_pred Eeccc-----CCHHHhCCCCCCEEECcCCEeeeEC---ChhHhcCCCCCEEECcCCcccCccCh--hhccCCCCcEEECc
Confidence 21110 1112234556666666655433333 22234455555555555432222221 33445555555555
Q ss_pred cccchHHHhhccCC--CCc------ccCCCCCCccccccccCeEecCCCCCccccccCCCCCCCCCCccccccccc-ccC
Q 042822 660 KCNKMKEIFAIGGE--EPD------VADNSNANEKIEFAQIRYLSLGNLPELKSFFCELRGPSMSPNRRETQEGLT-AST 730 (775)
Q Consensus 660 ~C~~L~~l~~~~~~--~~~------~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~l~~~~~l~-~~~ 730 (775)
+|.-...++..-.. ... ......|.....+++|+.|+|++|.-...+|.. ... ...++. +. ..+
T Consensus 461 ~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~--~~~--l~~L~~---L~Ls~N 533 (968)
T PLN00113 461 RNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE--LSS--CKKLVS---LDLSHN 533 (968)
T ss_pred CceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChH--HcC--ccCCCE---EECCCC
Confidence 55422211100000 000 000012344455677777777776444444432 111 111111 11 112
Q ss_pred CCcceeecCCCCCccccccceeeeccccch-hhhhcccceeecccC
Q 042822 731 GDSEIIVEDMPDTWTSLFNEKRLWSCVKLM-PKVFGTIKLLVAFNV 775 (775)
Q Consensus 731 ~~~~~~~~~~~~~~~~l~~~~~~~p~l~~~-p~~~~~L~~L~~~~~ 775 (775)
.+.+.++.. ......+-..+++.+++.+. |..+.+++.|..+|+
T Consensus 534 ~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l 578 (968)
T PLN00113 534 QLSGQIPAS-FSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNI 578 (968)
T ss_pred cccccCChh-HhCcccCCEEECCCCcccccCChhHhcCcccCEEec
Confidence 222333222 23334555666777777754 777777777776664
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=6.4e-24 Score=256.45 Aligned_cols=341 Identities=18% Similarity=0.203 Sum_probs=267.7
Q ss_pred CCCCccEEEcccCCCC----CccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEEEcCCCCCCC-ccccccCC
Q 042822 301 ECPQLELLLLSSKHSS----VDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGD-ITIIGELK 375 (775)
Q Consensus 301 ~~~~Lr~L~l~~~~~~----~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~-p~~i~~l~ 375 (775)
+|++|+.|.+..+... ....+|.++..-..+||.|++.++.+..+|..+ ...+|+.|++.++.+.. +.++..++
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~ 634 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLT 634 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCC
Confidence 7999999999765321 111466665333357999999999999999988 57899999999999988 78899999
Q ss_pred cccEEEecCC-CCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccceecccCCcccccccccc
Q 042822 376 NLEILSLIGS-DIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLD 454 (775)
Q Consensus 376 ~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~ 454 (775)
+|++|+++++ .++.+|. ++.+++|++|++++|..+..+|.. ++++++|+.|++++|.....+| .
T Consensus 635 ~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp-------------~ 699 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEILP-------------T 699 (1153)
T ss_pred CCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCccC-------------C
Confidence 9999999988 5778885 889999999999999999999998 9999999999999987664444 2
Q ss_pred ccCCCCCCCEEEEEeeC-CCCCCCccccccccceEEEecCCCCCCccccccccccccccccccccccccceEEEeccCcc
Q 042822 455 ELMPLPRLTTLEIAVEN-DNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNCKT 533 (775)
Q Consensus 455 ~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 533 (775)
.+ ++++|+.|+++++. ...+|. ...+|+.|.+..+....+|... .+++|+.|.+......
T Consensus 700 ~i-~l~sL~~L~Lsgc~~L~~~p~--~~~nL~~L~L~~n~i~~lP~~~----------------~l~~L~~L~l~~~~~~ 760 (1153)
T PLN03210 700 GI-NLKSLYRLNLSGCSRLKSFPD--ISTNISWLDLDETAIEEFPSNL----------------RLENLDELILCEMKSE 760 (1153)
T ss_pred cC-CCCCCCEEeCCCCCCcccccc--ccCCcCeeecCCCccccccccc----------------cccccccccccccchh
Confidence 22 68899999998764 444554 3467888888766655444321 1677888877653222
Q ss_pred cccc--------cccccccceEEeecccCCcccccccccccccccCcEEEeecCCCccccccCCCcccCCcccccceeec
Q 042822 534 ICSR--------KLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSL 605 (775)
Q Consensus 534 ~~~~--------~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l 605 (775)
..+. ....+++|+.|++++|.....++.. .+.+++|+.|++.+|.+++.+.. ...+++|+.|++
T Consensus 761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s--i~~L~~L~~L~Ls~C~~L~~LP~------~~~L~sL~~L~L 832 (1153)
T PLN03210 761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS--IQNLHKLEHLEIENCINLETLPT------GINLESLESLDL 832 (1153)
T ss_pred hccccccccchhhhhccccchheeCCCCCCccccChh--hhCCCCCCEEECCCCCCcCeeCC------CCCccccCEEEC
Confidence 2111 1124579999999999888877765 35699999999999999887642 225899999999
Q ss_pred ccccccccccccccCcccccCCCeEEeccCCCCCccccchhhcCCCCccEEEEecccchHHHhhccCCCCcccCCCCCCc
Q 042822 606 QNLINLKTICVDRLSTESFAELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVADNSNANE 685 (775)
Q Consensus 606 ~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~~~~~~~~~~~ 685 (775)
++|..+..++. ..++|++|++.+ ..++.+|. .+..+++|+.|++.+|++|+.+ +..
T Consensus 833 s~c~~L~~~p~------~~~nL~~L~Ls~-n~i~~iP~--si~~l~~L~~L~L~~C~~L~~l---------------~~~ 888 (1153)
T PLN03210 833 SGCSRLRTFPD------ISTNISDLNLSR-TGIEEVPW--WIEKFSNLSFLDMNGCNNLQRV---------------SLN 888 (1153)
T ss_pred CCCCccccccc------cccccCEeECCC-CCCccChH--HHhcCCCCCEEECCCCCCcCcc---------------Ccc
Confidence 99999887732 247899999998 47888876 7889999999999999999987 445
Q ss_pred cccccccCeEecCCCCCcccccc
Q 042822 686 KIEFAQIRYLSLGNLPELKSFFC 708 (775)
Q Consensus 686 ~~~~~~L~~L~l~~c~~L~~l~~ 708 (775)
...+++|+.+++++|++|+.++.
T Consensus 889 ~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 889 ISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred cccccCCCeeecCCCcccccccC
Confidence 56789999999999999987653
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=7.6e-26 Score=232.47 Aligned_cols=339 Identities=21% Similarity=0.261 Sum_probs=197.8
Q ss_pred ccccceeEEEEEcCCCCCCCCCC-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCC--CCCcccccccC
Q 042822 278 DALKKCYAISWIDSSGGELPEGL-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLF--SLPSSIDLLLN 354 (775)
Q Consensus 278 ~~~~~~~~l~l~~~~~~~lp~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~--~lp~~i~~l~~ 354 (775)
..+.++++|.+...++..+|..+ .+.+|+.|.+..|... .+..++ +.++.||.+++..|++. .+|..|..+..
T Consensus 29 ~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~---~vhGEL-s~Lp~LRsv~~R~N~LKnsGiP~diF~l~d 104 (1255)
T KOG0444|consen 29 EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI---SVHGEL-SDLPRLRSVIVRDNNLKNSGIPTDIFRLKD 104 (1255)
T ss_pred HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH---hhhhhh-ccchhhHHHhhhccccccCCCCchhccccc
Confidence 34566777777777777777766 6777777777777655 344443 67777788888877776 67777888888
Q ss_pred ccEEEcCCCCCCC-ccccccCCcccEEEecCCCCcccchh-hhccCCCCEecccCCccccccchHHhhccccccEEEcCC
Q 042822 355 LRTLCLDHGTLGD-ITIIGELKNLEILSLIGSDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSN 432 (775)
Q Consensus 355 L~~L~L~~~~l~~-p~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~ 432 (775)
|.+|||++|++++ |..+...+++-+|+|++|+|..+|.. +.+|+.|-+|++++| .+..+|+. +..|.+|++|.+++
T Consensus 105 Lt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~ 182 (1255)
T KOG0444|consen 105 LTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSN 182 (1255)
T ss_pred ceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCC
Confidence 8888888888777 77777778888888888888888765 457777788888876 67777777 77788888888877
Q ss_pred CcccceecccCCccccccccccccCCCCCCCEEEEEeeC--CCCCCCcc-ccccccceEEEecCCCCCCccccccccccc
Q 042822 433 CFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVEN--DNALPEGF-FVRELERFKILIGDRSFEPPVILSKDWFRI 509 (775)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~--~~~~~~~~-~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~ 509 (775)
|.+. ..-+..+..+++|+.|.+++.. ...+|..+ .
T Consensus 183 NPL~-------------hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~----------------------------- 220 (1255)
T KOG0444|consen 183 NPLN-------------HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDD----------------------------- 220 (1255)
T ss_pred Chhh-------------HHHHhcCccchhhhhhhcccccchhhcCCCchhh-----------------------------
Confidence 7654 1223444455556666666543 23344433 2
Q ss_pred cccccccccccccceEEEeccCcccccccccccccceEEeecccCCcccccccccccccccCcEEEeecCCCccccccCC
Q 042822 510 SRSHFLILDHQSLRMLKLKLNCKTICSRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSR 589 (775)
Q Consensus 510 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~ 589 (775)
+.||+.++++.+.....|..+..+++|+.|+|+++.. +.+... .+...+|++|.++.+. ++.+++
T Consensus 221 ---------l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~i-teL~~~--~~~W~~lEtLNlSrNQ-Lt~LP~-- 285 (1255)
T KOG0444|consen 221 ---------LHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKI-TELNMT--EGEWENLETLNLSRNQ-LTVLPD-- 285 (1255)
T ss_pred ---------hhhhhhccccccCCCcchHHHhhhhhhheeccCcCce-eeeecc--HHHHhhhhhhccccch-hccchH--
Confidence 4455555555554445555555555555555555432 222111 1224455555555432 222211
Q ss_pred CcccCCcccccceeecccccc-cccccccccCcccccCCCeEEeccCCCCCccccchhhcCCCCccEEEEecccchHHHh
Q 042822 590 EIVDCDAFPLLELLSLQNLIN-LKTICVDRLSTESFAELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIF 668 (775)
Q Consensus 590 ~~~~~~~~p~L~~L~l~~~~~-l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~~L~~l~ 668 (775)
....+++|++|.+.+..- .+.+ |..++.+..|+.+...+ ++|+-+|. ++..|+.|+.|.+ +|+.|..+
T Consensus 286 ---avcKL~kL~kLy~n~NkL~FeGi---PSGIGKL~~Levf~aan-N~LElVPE--glcRC~kL~kL~L-~~NrLiTL- 354 (1255)
T KOG0444|consen 286 ---AVCKLTKLTKLYANNNKLTFEGI---PSGIGKLIQLEVFHAAN-NKLELVPE--GLCRCVKLQKLKL-DHNRLITL- 354 (1255)
T ss_pred ---HHhhhHHHHHHHhccCcccccCC---ccchhhhhhhHHHHhhc-cccccCch--hhhhhHHHHHhcc-cccceeec-
Confidence 122344555554443211 2223 33444455555555444 34444443 4455555555555 44444444
Q ss_pred hccCCCCcccCCCCCCccccccccCeEecCCCCCcc
Q 042822 669 AIGGEEPDVADNSNANEKIEFAQIRYLSLGNLPELK 704 (775)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~ 704 (775)
|..+..++-|+.|++.+.|+|.
T Consensus 355 --------------PeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 355 --------------PEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred --------------hhhhhhcCCcceeeccCCcCcc
Confidence 4444555555555555555553
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=6.4e-25 Score=225.73 Aligned_cols=321 Identities=20% Similarity=0.230 Sum_probs=246.6
Q ss_pred ccccceeEEEEEcCCCCCCCCCC-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCcc
Q 042822 278 DALKKCYAISWIDSSGGELPEGL-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLR 356 (775)
Q Consensus 278 ~~~~~~~~l~l~~~~~~~lp~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~ 356 (775)
..++++.||++.+|.+..+...+ .++.||++++..|..... .+|.++| .+..|.+||||+|++.+.|..+..-+++-
T Consensus 52 ~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKns-GiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~i 129 (1255)
T KOG0444|consen 52 SRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNS-GIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSI 129 (1255)
T ss_pred HHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccC-CCCchhc-ccccceeeecchhhhhhcchhhhhhcCcE
Confidence 34678999999999987777665 899999999999887643 6899985 79999999999999999999999999999
Q ss_pred EEEcCCCCCCC-ccc-cccCCcccEEEecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCc
Q 042822 357 TLCLDHGTLGD-ITI-IGELKNLEILSLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCF 434 (775)
Q Consensus 357 ~L~L~~~~l~~-p~~-i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~ 434 (775)
+|+|++|+|.. |.+ +-+|+.|-+|||++|.+..+|+.+..|.+|++|++++|. +..+.-..+..+++|++|.+++..
T Consensus 130 VLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~Tq 208 (1255)
T KOG0444|consen 130 VLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQ 208 (1255)
T ss_pred EEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhccccc
Confidence 99999999998 644 679999999999999999999999999999999999984 333322225667888888888775
Q ss_pred ccceecccCCccccccccccccCCCCCCCEEEEEeeCCCCCCCcc-ccccccceEEEecCCCCCCccccccccccccccc
Q 042822 435 VEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPEGF-FVRELERFKILIGDRSFEPPVILSKDWFRISRSH 513 (775)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~~ 513 (775)
.+ ....+.++..+.+|+.++++.|++..+|..+ .+.+|++|+++.+.+..+..-...
T Consensus 209 RT------------l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~---------- 266 (1255)
T KOG0444|consen 209 RT------------LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGE---------- 266 (1255)
T ss_pred ch------------hhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHH----------
Confidence 44 2234578888999999999999999999876 668888888887765544322222
Q ss_pred cccccccccceEEEeccCcccccccccccccceEEeecccCCc-ccccccccccccccCcEEEeecCCCccccccCCCcc
Q 042822 514 FLILDHQSLRMLKLKLNCKTICSRKLQGIRKVEYLCLDKFQGV-KNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIV 592 (775)
Q Consensus 514 ~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~ 592 (775)
..+|++|.++.+.....|..+..++.|+.|++.++... ..+|. +.+.+.+|+.+...++ +++-++ .
T Consensus 267 -----W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPS--GIGKL~~Levf~aanN-~LElVP-----E 333 (1255)
T KOG0444|consen 267 -----WENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPS--GIGKLIQLEVFHAANN-KLELVP-----E 333 (1255)
T ss_pred -----HhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCcc--chhhhhhhHHHHhhcc-ccccCc-----h
Confidence 45788888888888888888888899998888776542 22222 3455677777776653 333322 1
Q ss_pred cCCcccccceeecccccccccccccccCcccccCCCeEEeccCCCCCc
Q 042822 593 DCDAFPLLELLSLQNLINLKTICVDRLSTESFAELRTMKVENCDELSN 640 (775)
Q Consensus 593 ~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~ 640 (775)
....+++|++|.+.+ +.|..+ |..+.-+|.|+.|++++.|+|.-
T Consensus 334 glcRC~kL~kL~L~~-NrLiTL---PeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 334 GLCRCVKLQKLKLDH-NRLITL---PEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred hhhhhHHHHHhcccc-cceeec---hhhhhhcCCcceeeccCCcCccC
Confidence 344567777777773 455555 44456677777778777777763
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=3.6e-22 Score=204.48 Aligned_cols=340 Identities=17% Similarity=0.164 Sum_probs=184.1
Q ss_pred ccceeEEEEEcCCCCCCCCC--CCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCC-CcccccccCcc
Q 042822 280 LKKCYAISWIDSSGGELPEG--LECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSL-PSSIDLLLNLR 356 (775)
Q Consensus 280 ~~~~~~l~l~~~~~~~lp~~--~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~ 356 (775)
+...+.|++++|.+.++-.. .++++|+.+.+..|... .+|.-. ....+|+.|+|.+|.|+.+ .+.+..++.||
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt---~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alr 152 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT---RIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALR 152 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh---hccccc-ccccceeEEeeeccccccccHHHHHhHhhhh
Confidence 44556666666666554432 26666666666666555 455422 3344566666666666654 24455666666
Q ss_pred EEEcCCCCCCC-c-cccccCCcccEEEecCCCCcccch-hhhccCCCCEecccCCccccccchHHhhccccccEEEcCCC
Q 042822 357 TLCLDHGTLGD-I-TIIGELKNLEILSLIGSDIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNC 433 (775)
Q Consensus 357 ~L~L~~~~l~~-p-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~ 433 (775)
.|||+.|.|.. | +++..-.++++|+|++|.|+.+-. .|..+.+|.+|.++.| .++.+|..+|.+|++|+.|++..|
T Consensus 153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred hhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhcccc
Confidence 66666666655 2 445555566666666666664432 3556666666666665 556666665666666666666666
Q ss_pred cccceecccCCccccccccccccCCCCCCCEEEEEeeCCCCCCCcc--ccccccceEEEecCCCCCCccccccccccccc
Q 042822 434 FVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPEGF--FVRELERFKILIGDRSFEPPVILSKDWFRISR 511 (775)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~ 511 (775)
.+.... --.+..+++|+.|.+..|++..+.+.+ .+.+++.|++..+... .+..+|.+
T Consensus 232 ~irive-------------~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~---~vn~g~lf----- 290 (873)
T KOG4194|consen 232 RIRIVE-------------GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ---AVNEGWLF----- 290 (873)
T ss_pred ceeeeh-------------hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh---hhhccccc-----
Confidence 544110 133455566666666666665555544 2355666655544322 22223322
Q ss_pred cccccccccccceEEEeccCcccc-cccccccccceEEeecccCCcccccccccccccccCcEEEeecCCCccccccCCC
Q 042822 512 SHFLILDHQSLRMLKLKLNCKTIC-SRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSRE 590 (775)
Q Consensus 512 ~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~ 590 (775)
+++.|+.|+++++....+ +......++|+.|+|+.+.. +.+... ....+..|++|.++++. +..+ .
T Consensus 291 ------gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i-~~l~~~-sf~~L~~Le~LnLs~Ns-i~~l----~ 357 (873)
T KOG4194|consen 291 ------GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRI-TRLDEG-SFRVLSQLEELNLSHNS-IDHL----A 357 (873)
T ss_pred ------ccchhhhhccchhhhheeecchhhhcccceeEecccccc-ccCChh-HHHHHHHhhhhcccccc-hHHH----H
Confidence 166666666666544332 22333566677777766542 222211 12335666666666643 2222 1
Q ss_pred cccCCcccccceeecccccccccccccccCcccccCCCeEEeccCCCCCccccchhhcCCCCccEEEEec
Q 042822 591 IVDCDAFPLLELLSLQNLINLKTICVDRLSTESFAELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIK 660 (775)
Q Consensus 591 ~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~ 660 (775)
.+....+.+|++|++++..---.+.++......+++|++|.+.+ +++++++. ..+..+++||+|++.+
T Consensus 358 e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~k-rAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 358 EGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPK-RAFSGLEALEHLDLGD 425 (873)
T ss_pred hhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecch-hhhccCcccceecCCC
Confidence 11233456667777665432222223333344577777777777 56777655 3456677777777744
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=1.8e-24 Score=211.90 Aligned_cols=434 Identities=17% Similarity=0.185 Sum_probs=254.8
Q ss_pred cccceeEEEEEcCCCCCCCCCC-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccE
Q 042822 279 ALKKCYAISWIDSSGGELPEGL-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRT 357 (775)
Q Consensus 279 ~~~~~~~l~l~~~~~~~lp~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~ 357 (775)
....+..+.+.+|+...+|+.+ .+..+..++++.|... .+|..+ ..+..|+.++.++|.+.++|++++.+..|..
T Consensus 66 nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls---~lp~~i-~s~~~l~~l~~s~n~~~el~~~i~~~~~l~d 141 (565)
T KOG0472|consen 66 NLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS---ELPEQI-GSLISLVKLDCSSNELKELPDSIGRLLDLED 141 (565)
T ss_pred cccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh---hccHHH-hhhhhhhhhhccccceeecCchHHHHhhhhh
Confidence 3456778888888888888877 7888888899888877 788877 7888899999999999999999999999999
Q ss_pred EEcCCCCCCC-ccccccCCcccEEEecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCccc
Q 042822 358 LCLDHGTLGD-ITIIGELKNLEILSLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVE 436 (775)
Q Consensus 358 L~L~~~~l~~-p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 436 (775)
|+..+|++.. |++++++..|..|++.+|+++.+|+..-+|+.|++|+...| .++.+|++ +|.+.+|..|++..|++.
T Consensus 142 l~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~-lg~l~~L~~LyL~~Nki~ 219 (565)
T KOG0472|consen 142 LDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPE-LGGLESLELLYLRRNKIR 219 (565)
T ss_pred hhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChh-hcchhhhHHHHhhhcccc
Confidence 9999998888 88899999999999999999988887777999999998886 78889988 899999999998888765
Q ss_pred ceecccCCccccccccccccCCCCCCCEEEEEeeCCCCCCCcc--ccccccceEEEecCCCCCCcccccccccccccccc
Q 042822 437 WKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPEGF--FVRELERFKILIGDRSFEPPVILSKDWFRISRSHF 514 (775)
Q Consensus 437 ~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~~~ 514 (775)
.+.++..+..|.+|.+..|.++.+|... .+.++..|++..+....+| .+.
T Consensus 220 ---------------~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~P---de~---------- 271 (565)
T KOG0472|consen 220 ---------------FLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVP---DEI---------- 271 (565)
T ss_pred ---------------cCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCc---hHH----------
Confidence 2345666666666666666666555532 2233333333333322221 100
Q ss_pred ccccccccceEEEeccCcccccccccccccceEEeecccCCcccccccccccccccCcEEEe-ecCCCccccccCCCc--
Q 042822 515 LILDHQSLRMLKLKLNCKTICSRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLV-QNNPDLLFIVDSREI-- 591 (775)
Q Consensus 515 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l-~~~~~l~~i~~~~~~-- 591 (775)
.-+.+|..|+++++.....|..++.+ +|+.|.+.|++.-+--......+.-.-||+|.= ..|..+..--++...
T Consensus 272 --clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~ 348 (565)
T KOG0472|consen 272 --CLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAM 348 (565)
T ss_pred --HHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccC
Confidence 01444555555555555555555555 555555555542111000000000001111110 001111000000000
Q ss_pred -ccCCccc------ccceeecccccccccccccccCcccccCCCeEEeccC----------------------CCCCccc
Q 042822 592 -VDCDAFP------LLELLSLQNLINLKTICVDRLSTESFAELRTMKVENC----------------------DELSNIF 642 (775)
Q Consensus 592 -~~~~~~p------~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C----------------------~~L~~l~ 642 (775)
...+.|| +.+.|.+++ ..+..++.+.+....---...++++.. .+..+++
T Consensus 349 t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv 427 (565)
T KOG0472|consen 349 TLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFV 427 (565)
T ss_pred CCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccc
Confidence 0112222 455555554 234444332211111011122222221 1122332
Q ss_pred cchhhcCCCCccEEEEecccchHHHhhccCCCCcccCCCCCCccccccccCeEecCCCCCccccccCCCCCCCCCCcccc
Q 042822 643 VLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVADNSNANEKIEFAQIRYLSLGNLPELKSFFCELRGPSMSPNRRET 722 (775)
Q Consensus 643 ~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~l~~ 722 (775)
+ ..+..+++|..|++++. -|.++ |.+++.+-+|+.|+|+.. ..+.+|. +.. .+++
T Consensus 428 ~-~~l~~l~kLt~L~L~NN-~Ln~L---------------P~e~~~lv~Lq~LnlS~N-rFr~lP~-----~~y--~lq~ 482 (565)
T KOG0472|consen 428 P-LELSQLQKLTFLDLSNN-LLNDL---------------PEEMGSLVRLQTLNLSFN-RFRMLPE-----CLY--ELQT 482 (565)
T ss_pred h-HHHHhhhcceeeecccc-hhhhc---------------chhhhhhhhhheeccccc-ccccchH-----HHh--hHHH
Confidence 2 25667888888888543 34444 667777788999988876 3333331 111 1122
Q ss_pred cccccccCCCcceeecCCCCCccccccceeeeccccchhhhhcccceeecccC
Q 042822 723 QEGLTASTGDSEIIVEDMPDTWTSLFNEKRLWSCVKLMPKVFGTIKLLVAFNV 775 (775)
Q Consensus 723 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~l~~~p~~~~~L~~L~~~~~ 775 (775)
...+.+.++.-+.+....+.....+...+.--+.+..+|..++++++|..+.+
T Consensus 483 lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL 535 (565)
T KOG0472|consen 483 LETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLEL 535 (565)
T ss_pred HHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEe
Confidence 33333343333344443344444555566667888989999999999987653
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=2.5e-21 Score=198.45 Aligned_cols=363 Identities=19% Similarity=0.181 Sum_probs=263.3
Q ss_pred ceeEEEEEcCCCCCCCCC----CCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccE
Q 042822 282 KCYAISWIDSSGGELPEG----LECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRT 357 (775)
Q Consensus 282 ~~~~l~l~~~~~~~lp~~----~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~ 357 (775)
..+-|+.++..+..+... .-.+..++|++++|.++ .+...+|.++++|+.+++.+|.++.+|...+...||+.
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~---~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~ 129 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS---HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEK 129 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccccccc---cCcHHHHhcCCcceeeeeccchhhhcccccccccceeE
Confidence 445555555554443211 13456788999999988 67777889999999999999999999998888899999
Q ss_pred EEcCCCCCCC--ccccccCCcccEEEecCCCCcccch-hhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCc
Q 042822 358 LCLDHGTLGD--ITIIGELKNLEILSLIGSDIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCF 434 (775)
Q Consensus 358 L~L~~~~l~~--p~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~ 434 (775)
|+|.+|.|.. -+++..+..|+.|||+.|.++++|. .+..=.++++|++++| .++.+-.+.|..+.+|-+|.++.|.
T Consensus 130 L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNr 208 (873)
T KOG4194|consen 130 LDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNR 208 (873)
T ss_pred EeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeecccCc
Confidence 9999999988 4668899999999999999998875 3555579999999998 7888877779999999999999999
Q ss_pred ccceecccCCccccccccccccCCCCCCCEEEEEeeCCCCCCCcc--ccccccceEEEecCCCCCCcccccccccccccc
Q 042822 435 VEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPEGF--FVRELERFKILIGDRSFEPPVILSKDWFRISRS 512 (775)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~ 512 (775)
++.-. ...++++++|+.|++..|.+..+.... .+++|+.+.+..++...+. ++
T Consensus 209 ittLp-------------~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~---DG--------- 263 (873)
T KOG4194|consen 209 ITTLP-------------QRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLD---DG--------- 263 (873)
T ss_pred ccccC-------------HHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccccc---Cc---------
Confidence 87333 377888999999999988776542211 4466777776655543332 11
Q ss_pred ccccccccccceEEEeccCccc-ccccccccccceEEeecccCCcccccccccccccccCcEEEeecCCCccccccCCCc
Q 042822 513 HFLILDHQSLRMLKLKLNCKTI-CSRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREI 591 (775)
Q Consensus 513 ~~~~~~~~~L~~L~l~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~ 591 (775)
.+-.+.++++|+|..+.... ...|+..+..|+.|+++.+.--.--+..+ .-+++|++|+++++. ++.+. .
T Consensus 264 --~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W--sftqkL~~LdLs~N~-i~~l~----~ 334 (873)
T KOG4194|consen 264 --AFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW--SFTQKLKELDLSSNR-ITRLD----E 334 (873)
T ss_pred --ceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh--hhcccceeEeccccc-cccCC----h
Confidence 11228899999998865544 34677899999999999886433222222 337899999999864 44331 1
Q ss_pred ccCCcccccceeecccccccccccccccCcccccCCCeEEeccCCCCC-ccc-cchhhcCCCCccEEEEecccchHHHhh
Q 042822 592 VDCDAFPLLELLSLQNLINLKTICVDRLSTESFAELRTMKVENCDELS-NIF-VLSTTKCLPSLQRIAVIKCNKMKEIFA 669 (775)
Q Consensus 592 ~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~-~l~-~~~~~~~l~~L~~L~l~~C~~L~~l~~ 669 (775)
.....+..|++|.+++. .+..+-. ..+..+.+|++|++++. .+. .+. ....+..+++|++|.+.+ ++++.+.
T Consensus 335 ~sf~~L~~Le~LnLs~N-si~~l~e--~af~~lssL~~LdLr~N-~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~- 408 (873)
T KOG4194|consen 335 GSFRVLSQLEELNLSHN-SIDHLAE--GAFVGLSSLHKLDLRSN-ELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIP- 408 (873)
T ss_pred hHHHHHHHhhhhccccc-chHHHHh--hHHHHhhhhhhhcCcCC-eEEEEEecchhhhccchhhhheeecC-ceeeecc-
Confidence 13345678899999874 4555522 23456789999999874 322 111 112456699999999954 6788774
Q ss_pred ccCCCCcccCCCCCCccccccccCeEecCCCC
Q 042822 670 IGGEEPDVADNSNANEKIEFAQIRYLSLGNLP 701 (775)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 701 (775)
......+++|++|++.+.+
T Consensus 409 -------------krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 409 -------------KRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred -------------hhhhccCcccceecCCCCc
Confidence 2344568889999988864
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.79 E-value=1.3e-22 Score=198.81 Aligned_cols=373 Identities=17% Similarity=0.180 Sum_probs=225.1
Q ss_pred ccceeEEEEEcCCCCCCCCCC-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEE
Q 042822 280 LKKCYAISWIDSSGGELPEGL-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTL 358 (775)
Q Consensus 280 ~~~~~~l~l~~~~~~~lp~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 358 (775)
...++++.++.|...++|+.+ .+..+..++..+|.+. .+|.++ ..+..|..+++.+|+++++|+..-+++.|+.|
T Consensus 113 ~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~---slp~~~-~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~l 188 (565)
T KOG0472|consen 113 LISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQIS---SLPEDM-VNLSKLSKLDLEGNKLKALPENHIAMKRLKHL 188 (565)
T ss_pred hhhhhhhhccccceeecCchHHHHhhhhhhhccccccc---cCchHH-HHHHHHHHhhccccchhhCCHHHHHHHHHHhc
Confidence 445667777777777777766 6777777777777766 577766 56777778888888888777766668888888
Q ss_pred EcCCCCCCC-ccccccCCcccEEEecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccc
Q 042822 359 CLDHGTLGD-ITIIGELKNLEILSLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEW 437 (775)
Q Consensus 359 ~L~~~~l~~-p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~ 437 (775)
|...|-++. |+.++.+..|..|++.+|++..+| +|..+..|.+|++..| .++.+|.+...++.+|..|++..|++.
T Consensus 189 d~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdNklk- 265 (565)
T KOG0472|consen 189 DCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDNKLK- 265 (565)
T ss_pred ccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhccc-HHHhhHHHHhcccccceeeeccccccc-
Confidence 888887777 788888888888888888888888 6788888888888776 677788875568888888888888765
Q ss_pred eecccCCccccccccccccCCCCCCCEEEEEeeCCCCCCCccccccccceEEEecCCCCCC-------------------
Q 042822 438 KVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEP------------------- 498 (775)
Q Consensus 438 ~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~------------------- 498 (775)
..+.++..+++|.+|++++|.++.+|..+.--+|+.|.+.++....+.
T Consensus 266 -------------e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~ 332 (565)
T KOG0472|consen 266 -------------EVPDEICLLRSLERLDLSNNDISSLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKI 332 (565)
T ss_pred -------------cCchHHHHhhhhhhhcccCCccccCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhh
Confidence 344777888888888998888888887652225555544432211000
Q ss_pred -----cccccccccccc---ccccccccccccceEEEec--------------------------cCccccccccccccc
Q 042822 499 -----PVILSKDWFRIS---RSHFLILDHQSLRMLKLKL--------------------------NCKTICSRKLQGIRK 544 (775)
Q Consensus 499 -----~l~~~~~~~~~~---~~~~~~~~~~~L~~L~l~~--------------------------~~~~~~~~~l~~l~~ 544 (775)
+.+.+-.....+ ..........+.+.|++++ +...+.|..+..+..
T Consensus 333 ~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lke 412 (565)
T KOG0472|consen 333 KDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKE 412 (565)
T ss_pred ccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHH
Confidence 000000000000 0000001123344444444 333334443333333
Q ss_pred ceEEeecccCCcccccccccccccccCcEEEeecCCCccccccCCCcccCCcccccceeecccccccccccccccCcccc
Q 042822 545 VEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKTICVDRLSTESF 624 (775)
Q Consensus 545 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~ 624 (775)
+.+.-+..+..+..++.. ...+++|..|+++++. +-++ ....+.+-.|+.|+++.. ....++ ......
T Consensus 413 lvT~l~lsnn~isfv~~~--l~~l~kLt~L~L~NN~-Ln~L-----P~e~~~lv~Lq~LnlS~N-rFr~lP---~~~y~l 480 (565)
T KOG0472|consen 413 LVTDLVLSNNKISFVPLE--LSQLQKLTFLDLSNNL-LNDL-----PEEMGSLVRLQTLNLSFN-RFRMLP---ECLYEL 480 (565)
T ss_pred HHHHHHhhcCccccchHH--HHhhhcceeeecccch-hhhc-----chhhhhhhhhheeccccc-ccccch---HHHhhH
Confidence 333222222222222222 2336666666666643 2211 113344555666666653 233331 111111
Q ss_pred cCCCeEEeccCCCCCccccchhhcCCCCccEEEEecccchHHHhhccCCCCcccCCCCCCccccccccCeEecCCCCC
Q 042822 625 AELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVADNSNANEKIEFAQIRYLSLGNLPE 702 (775)
Q Consensus 625 ~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 702 (775)
..|+.+- ....++.++++ ++++++.+|..|++ +.+.++.+ |..++++++|++|.|.|.|-
T Consensus 481 q~lEtll-as~nqi~~vd~-~~l~nm~nL~tLDL-~nNdlq~I---------------Pp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 481 QTLETLL-ASNNQIGSVDP-SGLKNMRNLTTLDL-QNNDLQQI---------------PPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred HHHHHHH-hccccccccCh-HHhhhhhhcceecc-CCCchhhC---------------ChhhccccceeEEEecCCcc
Confidence 2233332 33356667766 36788888999988 55667776 66778899999999998863
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.76 E-value=4.7e-20 Score=199.38 Aligned_cols=332 Identities=22% Similarity=0.219 Sum_probs=159.7
Q ss_pred eeEEEEEcCCCCCCCCCC-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEEEcC
Q 042822 283 CYAISWIDSSGGELPEGL-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTLCLD 361 (775)
Q Consensus 283 ~~~l~l~~~~~~~lp~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~ 361 (775)
+.+|++++|.+..+|..+ .+.+|+.|.++.|.+. .+|.+. .++++|++|.|.+|.+..+|.++..+++|++|+++
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~---~vp~s~-~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR---SVPSSC-SNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLS 122 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhhHh---hCchhh-hhhhcchhheeccchhhcCchhHHhhhcccccccc
Confidence 455555555555555544 5555555555555554 344433 45555555555555555555555555555555555
Q ss_pred CCCCCC-ccccccCCcccEEEecCC-CCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCccccee
Q 042822 362 HGTLGD-ITIIGELKNLEILSLIGS-DIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKV 439 (775)
Q Consensus 362 ~~~l~~-p~~i~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~ 439 (775)
+|.+.. |.-+..+..+..+..++| ++..++. +. .+++++..+...+.++.+ +..+++ .|++.+|.+.
T Consensus 123 ~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~----~~-ik~~~l~~n~l~~~~~~~-i~~l~~--~ldLr~N~~~--- 191 (1081)
T KOG0618|consen 123 FNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ----TS-IKKLDLRLNVLGGSFLID-IYNLTH--QLDLRYNEME--- 191 (1081)
T ss_pred hhccCCCchhHHhhhHHHHHhhhcchhhhhhcc----cc-chhhhhhhhhcccchhcc-hhhhhe--eeecccchhh---
Confidence 555544 444555555555555555 2222222 11 444455444444444444 444444 4666655543
Q ss_pred cccCCccccccccccccCCCCCCCEEEEEeeCCCCC--------------------CCccccccccceEEEecCCCCCCc
Q 042822 440 EDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNAL--------------------PEGFFVRELERFKILIGDRSFEPP 499 (775)
Q Consensus 440 ~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~--------------------~~~~~~~~L~~L~l~~~~~~~l~~ 499 (775)
...+..+++|+.+....+....+ -......+|+.++++...+..+|
T Consensus 192 -------------~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp- 257 (1081)
T KOG0618|consen 192 -------------VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP- 257 (1081)
T ss_pred -------------hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcch-
Confidence 12333444444444333332221 11112233333333333322222
Q ss_pred cccccccccccccccccccccccceEEEeccCcccccccccccccceEEeecccCCcccccccccccccccCcEEEeecC
Q 042822 500 VILSKDWFRISRSHFLILDHQSLRMLKLKLNCKTICSRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNN 579 (775)
Q Consensus 500 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 579 (775)
+| +..+.+|+.+....+.....|..+....+|++|.+..|. ++.+++. .+++.+|++|++..+
T Consensus 258 ---~w-----------i~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~--le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 258 ---EW-----------IGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE-LEYIPPF--LEGLKSLRTLDLQSN 320 (1081)
T ss_pred ---HH-----------HHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh-hhhCCCc--ccccceeeeeeehhc
Confidence 11 111444444444444434444444444444444443332 2233322 344778888888764
Q ss_pred CCccccccCC---------------------CcccCCcccccceeecccccccccccccccCcccccCCCeEEeccCCCC
Q 042822 580 PDLLFIVDSR---------------------EIVDCDAFPLLELLSLQNLINLKTICVDRLSTESFAELRTMKVENCDEL 638 (775)
Q Consensus 580 ~~l~~i~~~~---------------------~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L 638 (775)
. +...++.. .......++.|+.|++.+.. +++-+ ......|++|+.|++++ ++|
T Consensus 321 ~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~-Ltd~c--~p~l~~~~hLKVLhLsy-NrL 395 (1081)
T KOG0618|consen 321 N-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH-LTDSC--FPVLVNFKHLKVLHLSY-NRL 395 (1081)
T ss_pred c-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc-ccccc--hhhhccccceeeeeecc-ccc
Confidence 2 33221100 01123345566666666532 33222 12345678888888887 577
Q ss_pred CccccchhhcCCCCccEEEEecccchHHH
Q 042822 639 SNIFVLSTTKCLPSLQRIAVIKCNKMKEI 667 (775)
Q Consensus 639 ~~l~~~~~~~~l~~L~~L~l~~C~~L~~l 667 (775)
.++|. ..+.+++.|++|++++ ++|+.+
T Consensus 396 ~~fpa-s~~~kle~LeeL~LSG-NkL~~L 422 (1081)
T KOG0618|consen 396 NSFPA-SKLRKLEELEELNLSG-NKLTTL 422 (1081)
T ss_pred ccCCH-HHHhchHHhHHHhccc-chhhhh
Confidence 77765 4677788888888865 234444
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.70 E-value=7.4e-19 Score=190.26 Aligned_cols=361 Identities=18% Similarity=0.209 Sum_probs=195.3
Q ss_pred ccccceeEEEEEcCCCCCCCCCC-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccc----
Q 042822 278 DALKKCYAISWIDSSGGELPEGL-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLL---- 352 (775)
Q Consensus 278 ~~~~~~~~l~l~~~~~~~lp~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l---- 352 (775)
....+++.+.++.|.+..+|... .+++|++|.+.+|... .+|.++ ..+++|.+||+++|.+..+|..+..+
T Consensus 65 t~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~---~lP~~~-~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~ 140 (1081)
T KOG0618|consen 65 TLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQ---SLPASI-SELKNLQYLDLSFNHFGPIPLVIEVLTAEE 140 (1081)
T ss_pred hhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhh---cCchhH-HhhhcccccccchhccCCCchhHHhhhHHH
Confidence 34456666677667676776544 6777777777776655 466665 66777777777777665555433211
Q ss_pred ------------------------------------cCcc-EEEcCCCCCCC--ccccc-----------------cCCc
Q 042822 353 ------------------------------------LNLR-TLCLDHGTLGD--ITIIG-----------------ELKN 376 (775)
Q Consensus 353 ------------------------------------~~L~-~L~L~~~~l~~--p~~i~-----------------~l~~ 376 (775)
.+|+ .|+|+.|.+.. ..... .-.+
T Consensus 141 ~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~ 220 (1081)
T KOG0618|consen 141 ELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPS 220 (1081)
T ss_pred HHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcc
Confidence 1112 35555554331 00000 0112
Q ss_pred ccEEEecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccceecccCCcccccccccccc
Q 042822 377 LEILSLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDEL 456 (775)
Q Consensus 377 L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l 456 (775)
|+.|+.+.|.++.+-. -..-.+|++++++++ .+..+|.. ++.+.+|+.++...|.+. +.+..+
T Consensus 221 l~~L~a~~n~l~~~~~-~p~p~nl~~~dis~n-~l~~lp~w-i~~~~nle~l~~n~N~l~--------------~lp~ri 283 (1081)
T KOG0618|consen 221 LTALYADHNPLTTLDV-HPVPLNLQYLDISHN-NLSNLPEW-IGACANLEALNANHNRLV--------------ALPLRI 283 (1081)
T ss_pred hheeeeccCcceeecc-ccccccceeeecchh-hhhcchHH-HHhcccceEecccchhHH--------------hhHHHH
Confidence 2223333332221100 011134555555554 34445532 555555555555555442 222444
Q ss_pred CCCCCCCEEEEEeeCCCCCCCccc-cccccceEEEecCCCCCCccccccccccccccccccccccccceEEEeccCcccc
Q 042822 457 MPLPRLTTLEIAVENDNALPEGFF-VRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNCKTIC 535 (775)
Q Consensus 457 ~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 535 (775)
...++|+.|.+..|..+.+|.... ..+|++|++..+....+|..... .....|..|..+.+.....
T Consensus 284 ~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~-------------v~~~~l~~ln~s~n~l~~l 350 (1081)
T KOG0618|consen 284 SRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLA-------------VLNASLNTLNVSSNKLSTL 350 (1081)
T ss_pred hhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHh-------------hhhHHHHHHhhhhcccccc
Confidence 444445554444444444444332 34444444443333332221000 0011233333333322222
Q ss_pred ccccc-ccccceEEeecccCCcccccccccccccccCcEEEeecCCCccccccCCCcccCCcccccceeecccccccccc
Q 042822 536 SRKLQ-GIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKTI 614 (775)
Q Consensus 536 ~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~ 614 (775)
|..-. .++.|+.|++.++.......+. ..++++||.|+++++. +..+.+ .....++.||.|.+++ .+|+.+
T Consensus 351 p~~~e~~~~~Lq~LylanN~Ltd~c~p~--l~~~~hLKVLhLsyNr-L~~fpa----s~~~kle~LeeL~LSG-NkL~~L 422 (1081)
T KOG0618|consen 351 PSYEENNHAALQELYLANNHLTDSCFPV--LVNFKHLKVLHLSYNR-LNSFPA----SKLRKLEELEELNLSG-NKLTTL 422 (1081)
T ss_pred ccccchhhHHHHHHHHhcCcccccchhh--hccccceeeeeecccc-cccCCH----HHHhchHHhHHHhccc-chhhhh
Confidence 32111 5778889999888766655544 4568999999998864 332211 1334577888889987 478888
Q ss_pred cccccCcccccCCCeEEeccCCCCCccccchhhcCCCCccEEEEecccchHHHhhccCCCCcccCCCCCCccccc-cccC
Q 042822 615 CVDRLSTESFAELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVADNSNANEKIEF-AQIR 693 (775)
Q Consensus 615 ~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~-~~L~ 693 (775)
+ .....++.|++|...+ +.+..+| .+..++.|+.+++ +|++|+++.... ... |+|+
T Consensus 423 p---~tva~~~~L~tL~ahs-N~l~~fP---e~~~l~qL~~lDl-S~N~L~~~~l~~---------------~~p~p~Lk 479 (1081)
T KOG0618|consen 423 P---DTVANLGRLHTLRAHS-NQLLSFP---ELAQLPQLKVLDL-SCNNLSEVTLPE---------------ALPSPNLK 479 (1081)
T ss_pred h---HHHHhhhhhHHHhhcC-Cceeech---hhhhcCcceEEec-ccchhhhhhhhh---------------hCCCcccc
Confidence 4 4445688888887765 4666665 4678999999999 899999884221 122 8999
Q ss_pred eEecCCCCCc
Q 042822 694 YLSLGNLPEL 703 (775)
Q Consensus 694 ~L~l~~c~~L 703 (775)
+|+++|.+.+
T Consensus 480 yLdlSGN~~l 489 (1081)
T KOG0618|consen 480 YLDLSGNTRL 489 (1081)
T ss_pred eeeccCCccc
Confidence 9999998753
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=8.8e-19 Score=152.24 Aligned_cols=166 Identities=26% Similarity=0.355 Sum_probs=134.5
Q ss_pred CCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEEEcCCCCCCC-cccc
Q 042822 293 GGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGD-ITII 371 (775)
Q Consensus 293 ~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~-p~~i 371 (775)
+.++|..+.++++..|.++.|... .+|+.+ ..+++|++|++.+|+++++|.+|+.++.||.|++.-|.+.. |..+
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~---~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgf 98 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLT---VVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGF 98 (264)
T ss_pred HhhcccccchhhhhhhhcccCcee---ecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcccc
Confidence 456666677888888888888777 577776 78888888888888888888888888888888888888766 8888
Q ss_pred ccCCcccEEEecCCCCc--ccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccceecccCCccccc
Q 042822 372 GELKNLEILSLIGSDIV--EFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKVEDEGSSSKRS 449 (775)
Q Consensus 372 ~~l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 449 (775)
|.++.|+.||+.+|++. .+|..|-.|+.|+.|++++| ..+.+|++ +|++++||.|.+..|.+.
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndll------------- 163 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDLL------------- 163 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCchh-------------
Confidence 88888888888888766 78888888888888888887 56778887 888888888888887765
Q ss_pred cccccccCCCCCCCEEEEEeeCCCCCCCc
Q 042822 450 KASLDELMPLPRLTTLEIAVENDNALPEG 478 (775)
Q Consensus 450 ~~~l~~l~~l~~L~~L~l~~~~~~~~~~~ 478 (775)
..+.+++.+++|++|.|.+|....+|..
T Consensus 164 -~lpkeig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 164 -SLPKEIGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred -hCcHHHHHHHHHHHHhcccceeeecChh
Confidence 3447888888888888888888777764
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=2.1e-17 Score=143.80 Aligned_cols=156 Identities=24% Similarity=0.339 Sum_probs=143.7
Q ss_pred CCcccccceeEEEEEcCCCCCCCCCC-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCccccccc
Q 042822 275 PDKDALKKCYAISWIDSSGGELPEGL-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLL 353 (775)
Q Consensus 275 ~~~~~~~~~~~l~l~~~~~~~lp~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~ 353 (775)
+.--..+.+++|.+++|++..+|+.+ .+.+|++|.+++|.+. ++|.++ +.++.||.|+++-|.+..+|..||.++
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie---~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p 102 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE---ELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFP 102 (264)
T ss_pred ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh---hcChhh-hhchhhhheecchhhhhcCccccCCCc
Confidence 34445678899999999999999988 9999999999999987 799887 899999999999999999999999999
Q ss_pred CccEEEcCCCCCCC---ccccccCCcccEEEecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEc
Q 042822 354 NLRTLCLDHGTLGD---ITIIGELKNLEILSLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYM 430 (775)
Q Consensus 354 ~L~~L~L~~~~l~~---p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l 430 (775)
.|++||+..|++.+ |..+-.+..|+.|+++.|.+.-+|..++++++||.|.+.+| .+-++|++ +|.++.|++|.+
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpke-ig~lt~lrelhi 180 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKE-IGDLTRLRELHI 180 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHH-HHHHHHHHHHhc
Confidence 99999999999876 77788899999999999999999999999999999999998 67789999 999999999999
Q ss_pred CCCccc
Q 042822 431 SNCFVE 436 (775)
Q Consensus 431 ~~~~~~ 436 (775)
.+|.+.
T Consensus 181 qgnrl~ 186 (264)
T KOG0617|consen 181 QGNRLT 186 (264)
T ss_pred ccceee
Confidence 999876
No 17
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.56 E-value=3e-15 Score=171.90 Aligned_cols=162 Identities=26% Similarity=0.328 Sum_probs=127.2
Q ss_pred CCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCC--CCCCCcc-cccccCccEEEcCCCC-CCC
Q 042822 292 SGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQ--LFSLPSS-IDLLLNLRTLCLDHGT-LGD 367 (775)
Q Consensus 292 ~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~--~~~lp~~-i~~l~~L~~L~L~~~~-l~~ 367 (775)
...+.|...+....|...+.+|... .++.. ..++.|++|-+.+|. +..++.. |..++.|++|||++|. +..
T Consensus 512 ~~~~~~~~~~~~~~rr~s~~~~~~~---~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~ 586 (889)
T KOG4658|consen 512 GLSEIPQVKSWNSVRRMSLMNNKIE---HIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK 586 (889)
T ss_pred CccccccccchhheeEEEEeccchh---hccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc
Confidence 4445666667788899988888765 45544 356689999999986 5666544 7789999999999886 556
Q ss_pred -ccccccCCcccEEEecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccceecccCCcc
Q 042822 368 -ITIIGELKNLEILSLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKVEDEGSSS 446 (775)
Q Consensus 368 -p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~ 446 (775)
|.+|++|.+||+|+++++.++.+|.++++|++|.+|++..+..+..+|.. +..|++|++|.+......
T Consensus 587 LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i-~~~L~~Lr~L~l~~s~~~---------- 655 (889)
T KOG4658|consen 587 LPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGI-LLELQSLRVLRLPRSALS---------- 655 (889)
T ss_pred CChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccch-hhhcccccEEEeeccccc----------
Confidence 89999999999999999999999999999999999999998777777553 777999999998765421
Q ss_pred ccccccccccCCCCCCCEEEEEee
Q 042822 447 KRSKASLDELMPLPRLTTLEIAVE 470 (775)
Q Consensus 447 ~~~~~~l~~l~~l~~L~~L~l~~~ 470 (775)
.+...+.++.++.+|+.+.+...
T Consensus 656 -~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 656 -NDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred -cchhhHHhhhcccchhhheeecc
Confidence 23445677777777777777543
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.56 E-value=4.5e-14 Score=158.68 Aligned_cols=254 Identities=17% Similarity=0.145 Sum_probs=133.5
Q ss_pred ccEEEecCCCCCCCCcccccccCccEEEcCCCCCCCccccccCCcccEEEecCCCCcccchhhhccCCCCEecccCCccc
Q 042822 332 LKVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGDITIIGELKNLEILSLIGSDIVEFPEELGKLTKLRLLDLTNCFHL 411 (775)
Q Consensus 332 L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l 411 (775)
-.+|+++++.++.+|..+. .+|+.|++.+|.++..+. .+++|++|++++|+++.+|.. ..+|++|++++| .+
T Consensus 203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N-~L 274 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN-PL 274 (788)
T ss_pred CcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCcccCc---ccccceeeccCC-ch
Confidence 3445555555555555443 245555555555554211 134555555555555555532 234555555554 34
Q ss_pred cccchHHhhccccccEEEcCCCcccceecccCCccccccccccccCCCCCCCEEEEEeeCCCCCCCccccccccceEEEe
Q 042822 412 KVIAANLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILI 491 (775)
Q Consensus 412 ~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~ 491 (775)
..+|.. .++|+.|++++|.+.. +| . .+++|+.|++++|.+..+|. ...+|+.|.+..
T Consensus 275 ~~Lp~l----p~~L~~L~Ls~N~Lt~-LP-------------~---~p~~L~~LdLS~N~L~~Lp~--lp~~L~~L~Ls~ 331 (788)
T PRK15387 275 THLPAL----PSGLCKLWIFGNQLTS-LP-------------V---LPPGLQELSVSDNQLASLPA--LPSELCKLWAYN 331 (788)
T ss_pred hhhhhc----hhhcCEEECcCCcccc-cc-------------c---cccccceeECCCCccccCCC--Cccccccccccc
Confidence 444431 1344455555554431 11 0 12345555555555554443 123344444444
Q ss_pred cCCCCCCccccccccccccccccccccccccceEEEeccCcccccccccccccceEEeecccCCcccccccccccccccC
Q 042822 492 GDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNCKTICSRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQL 571 (775)
Q Consensus 492 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L 571 (775)
+.+..+|.+ +.+|+.|+++++.....|.. .++|+.|++++|. +..++.. .++|
T Consensus 332 N~L~~LP~l------------------p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~-L~~LP~l-----~~~L 384 (788)
T PRK15387 332 NQLTSLPTL------------------PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNR-LTSLPAL-----PSGL 384 (788)
T ss_pred Ccccccccc------------------ccccceEecCCCccCCCCCC---Ccccceehhhccc-cccCccc-----cccc
Confidence 443333321 34667777776655555542 3567777777654 3333321 3567
Q ss_pred cEEEeecCCCccccccCCCcccCCcccccceeecccccccccccccccCcccccCCCeEEeccCCCCCccccchhhcCCC
Q 042822 572 KHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKTICVDRLSTESFAELRTMKVENCDELSNIFVLSTTKCLP 651 (775)
Q Consensus 572 ~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~ 651 (775)
+.|+++++. ++.+. ...++|+.|+++++ .+..++. .+.+|+.|++++ ++++.+|. .+..++
T Consensus 385 ~~LdLs~N~-Lt~LP--------~l~s~L~~LdLS~N-~LssIP~------l~~~L~~L~Ls~-NqLt~LP~--sl~~L~ 445 (788)
T PRK15387 385 KELIVSGNR-LTSLP--------VLPSELKELMVSGN-RLTSLPM------LPSGLLSLSVYR-NQLTRLPE--SLIHLS 445 (788)
T ss_pred ceEEecCCc-ccCCC--------CcccCCCEEEccCC-cCCCCCc------chhhhhhhhhcc-CcccccCh--HHhhcc
Confidence 788887753 33221 12357888888875 3555521 134678888877 46777766 567788
Q ss_pred CccEEEEeccc
Q 042822 652 SLQRIAVIKCN 662 (775)
Q Consensus 652 ~L~~L~l~~C~ 662 (775)
+|+.|++++++
T Consensus 446 ~L~~LdLs~N~ 456 (788)
T PRK15387 446 SETTVNLEGNP 456 (788)
T ss_pred CCCeEECCCCC
Confidence 88888887665
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.56 E-value=7.6e-14 Score=156.84 Aligned_cols=133 Identities=20% Similarity=0.160 Sum_probs=58.3
Q ss_pred cceeEEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEEEc
Q 042822 281 KKCYAISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTLCL 360 (775)
Q Consensus 281 ~~~~~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L 360 (775)
.+++.|.+.+|.+..+|.. .++|++|++++|.+. .+|. ..++|+.|++++|.++.+|... .+|+.|++
T Consensus 222 ~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~Lt---sLP~----lp~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~L 289 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLT---SLPV----LPPGLLELSIFSNPLTHLPALP---SGLCKLWI 289 (788)
T ss_pred cCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccC---cccC----cccccceeeccCCchhhhhhch---hhcCEEEC
Confidence 3445555555555544432 344555555555444 2332 1234455555555554444321 33444555
Q ss_pred CCCCCCC-ccccccCCcccEEEecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCccc
Q 042822 361 DHGTLGD-ITIIGELKNLEILSLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVE 436 (775)
Q Consensus 361 ~~~~l~~-p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 436 (775)
++|.++. |. .+++|++|++++|+++.+|... .+|+.|++++| .++.+|.. ..+|++|++++|.+.
T Consensus 290 s~N~Lt~LP~---~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N-~L~~LP~l----p~~Lq~LdLS~N~Ls 355 (788)
T PRK15387 290 FGNQLTSLPV---LPPGLQELSVSDNQLASLPALP---SELCKLWAYNN-QLTSLPTL----PSGLQELSVSDNQLA 355 (788)
T ss_pred cCCccccccc---cccccceeECCCCccccCCCCc---ccccccccccC-cccccccc----ccccceEecCCCccC
Confidence 5555444 22 1234555555555554444321 23444444444 33334421 124455555554443
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.53 E-value=2.8e-14 Score=161.50 Aligned_cols=136 Identities=17% Similarity=0.285 Sum_probs=64.5
Q ss_pred eEEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEEEcCCC
Q 042822 284 YAISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTLCLDHG 363 (775)
Q Consensus 284 ~~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~ 363 (775)
..|.+.++++..+|..+ .++|+.|++++|.+. .+|..++ .+|++|++++|.++.+|..+. .+|+.|++++|
T Consensus 181 ~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~Lt---sLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 181 TELRLKILGLTTIPACI-PEQITTLILDNNELK---SLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred eEEEeCCCCcCcCCccc-ccCCcEEEecCCCCC---cCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 34444444444444433 134555555555444 3444332 345555555555555554432 24555555555
Q ss_pred CCCC-ccccccCCcccEEEecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCccc
Q 042822 364 TLGD-ITIIGELKNLEILSLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVE 436 (775)
Q Consensus 364 ~l~~-p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 436 (775)
.+.. |..+. .+|++|++++|+++.+|..+. .+|++|++++| .++.+|.. +. ++|+.|++++|.+.
T Consensus 252 ~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-lp--~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 252 RITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-LP--SGITHLNVQSNSLT 317 (754)
T ss_pred ccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCccc-ch--hhHHHHHhcCCccc
Confidence 5544 33332 345555555555555554432 34555555554 34444443 21 24455555555443
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.50 E-value=7.2e-14 Score=158.18 Aligned_cols=233 Identities=16% Similarity=0.212 Sum_probs=169.6
Q ss_pred CccCCCCcccccceeEEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCccc
Q 042822 270 DVWEWPDKDALKKCYAISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSI 349 (775)
Q Consensus 270 ~~~~~~~~~~~~~~~~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i 349 (775)
.+...|. ..+..++.|.+.+|.+..+|..+ .++|++|++++|.+. .+|..+. .+|+.|++++|.+..+|..+
T Consensus 189 ~LtsLP~-~Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~Lt---sLP~~l~---~~L~~L~Ls~N~L~~LP~~l 260 (754)
T PRK15370 189 GLTTIPA-CIPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQLT---SIPATLP---DTIQEMELSINRITELPERL 260 (754)
T ss_pred CcCcCCc-ccccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccc---cCChhhh---ccccEEECcCCccCcCChhH
Confidence 3344443 34568999999999999998765 368999999999877 6777553 47999999999999999877
Q ss_pred ccccCccEEEcCCCCCCC-ccccccCCcccEEEecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEE
Q 042822 350 DLLLNLRTLCLDHGTLGD-ITIIGELKNLEILSLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEEL 428 (775)
Q Consensus 350 ~~l~~L~~L~L~~~~l~~-p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L 428 (775)
. .+|++|++++|.+.. |..+. .+|++|++++|+++.+|..+. .+|++|++++| .+..+|.. + .++|+.|
T Consensus 261 ~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N-~Lt~LP~~-l--~~sL~~L 330 (754)
T PRK15370 261 P--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSN-SLTALPET-L--PPGLKTL 330 (754)
T ss_pred h--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCC-ccccCCcc-c--cccceec
Confidence 5 589999999999988 66554 589999999999999987654 47999999998 56778765 3 3689999
Q ss_pred EcCCCcccceecccCCccccccccccccCCCCCCCEEEEEeeCCCCCCCccccccccceEEEecCCCCCCcccccccccc
Q 042822 429 YMSNCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFR 508 (775)
Q Consensus 429 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~~~~~ 508 (775)
++++|.+.. +| ..+ .++|+.|++++|.+..+|..+ .++|+.|++..+.+..+|.-.
T Consensus 331 ~Ls~N~Lt~-LP-------------~~l--~~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs~N~Lt~LP~~l------- 386 (754)
T PRK15370 331 EAGENALTS-LP-------------ASL--PPELQVLDVSKNQITVLPETL-PPTITTLDVSRNALTNLPENL------- 386 (754)
T ss_pred cccCCcccc-CC-------------hhh--cCcccEEECCCCCCCcCChhh-cCCcCEEECCCCcCCCCCHhH-------
Confidence 999998762 22 222 268999999999888777643 356777777666544333210
Q ss_pred ccccccccccccccceEEEeccCccccccccc----ccccceEEeecccC
Q 042822 509 ISRSHFLILDHQSLRMLKLKLNCKTICSRKLQ----GIRKVEYLCLDKFQ 554 (775)
Q Consensus 509 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~----~l~~L~~L~l~~~~ 554 (775)
..+|+.|+++++.....|..+. .++++..|.+.+++
T Consensus 387 ----------~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 387 ----------PAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred ----------HHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 2356666666665555554433 33566666666654
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.24 E-value=1.4e-12 Score=129.07 Aligned_cols=269 Identities=18% Similarity=0.183 Sum_probs=136.3
Q ss_pred ecCCccCCCCcccccceeEEEEEcCCCCCCCCCC--CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecC-CCCC
Q 042822 267 RNGDVWEWPDKDALKKCYAISWIDSSGGELPEGL--ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTN-MQLF 343 (775)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~l~l~~~~~~~lp~~~--~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~-~~~~ 343 (775)
++..+.+.|. +.+.....+.+..|++..+|+.. .+++||.|+++.|.+. .|.++.|.+++.|..|-+.+ |+|+
T Consensus 54 r~~GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is---~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 54 RGKGLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS---FIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred cCCCcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceecccccchh---hcChHhhhhhHhhhHHHhhcCCchh
Confidence 3334444433 44555666666666666666543 6666666666666665 45455556666655554444 6666
Q ss_pred CCCc-ccccccCccEEEcCCCCCCC--ccccccCCcccEEEecCCCCcccch-hhhccCCCCEecccCCccc-----c--
Q 042822 344 SLPS-SIDLLLNLRTLCLDHGTLGD--ITIIGELKNLEILSLIGSDIVEFPE-ELGKLTKLRLLDLTNCFHL-----K-- 412 (775)
Q Consensus 344 ~lp~-~i~~l~~L~~L~L~~~~l~~--p~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l-----~-- 412 (775)
.+|. .|++|..|+.|.+.-|.+.- ...+..+++|..|.+..|.+..++. .+..+..++++.+..|..+ .
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wl 209 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWL 209 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchh
Confidence 6653 35566666666666665544 2445566666666666666665555 4555566665555433211 0
Q ss_pred -----ccchHHhhccccccEEEcCCCcccc-----------eeccc--CCccccccccccccCCCCCCCEEEEEeeCCCC
Q 042822 413 -----VIAANLIASFTRLEELYMSNCFVEW-----------KVEDE--GSSSKRSKASLDELMPLPRLTTLEIAVENDNA 474 (775)
Q Consensus 413 -----~~p~~~l~~L~~L~~L~l~~~~~~~-----------~~~~~--~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~ 474 (775)
..|.+ ++......-..+.+..+.. ..+.. .........-..-++.+++|++|++++|.+..
T Consensus 210 a~~~a~~~ie-tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~ 288 (498)
T KOG4237|consen 210 ADDLAMNPIE-TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR 288 (498)
T ss_pred hhHHhhchhh-cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch
Confidence 00111 1111111111110000000 00000 00001111223447889999999999999887
Q ss_pred CCCcc--ccccccceEEEecCCCCCCccccccccccccccccccccccccceEEEeccCcccc-cccccccccceEEeec
Q 042822 475 LPEGF--FVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNCKTIC-SRKLQGIRKVEYLCLD 551 (775)
Q Consensus 475 ~~~~~--~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~ 551 (775)
+.+.. ...+++.|.+..+....+ ....+.++.+|+.|+|+++..... |-.+..+.+|.+|.+-
T Consensus 289 i~~~aFe~~a~l~eL~L~~N~l~~v--------------~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 289 IEDGAFEGAAELQELYLTRNKLEFV--------------SSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLL 354 (498)
T ss_pred hhhhhhcchhhhhhhhcCcchHHHH--------------HHHhhhccccceeeeecCCeeEEEecccccccceeeeeehc
Confidence 76543 336666666554442221 111223467777777776554433 3333456666666665
Q ss_pred ccC
Q 042822 552 KFQ 554 (775)
Q Consensus 552 ~~~ 554 (775)
.++
T Consensus 355 ~Np 357 (498)
T KOG4237|consen 355 SNP 357 (498)
T ss_pred cCc
Confidence 554
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.17 E-value=5.6e-12 Score=132.74 Aligned_cols=137 Identities=22% Similarity=0.212 Sum_probs=74.3
Q ss_pred hhhCCCcccEEEecCCCCC-----CCCcccccccCccEEEcCCCCCCC--------ccccccCCcccEEEecCCCCc-cc
Q 042822 325 FFTGMRELKVVDLTNMQLF-----SLPSSIDLLLNLRTLCLDHGTLGD--------ITIIGELKNLEILSLIGSDIV-EF 390 (775)
Q Consensus 325 ~~~~l~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~L~~~~l~~--------p~~i~~l~~L~~L~l~~~~l~-~l 390 (775)
+|..+.+|++|+++++.++ .++..+...++|++|+++++.+.. +..+.++.+|++|++++|.+. ..
T Consensus 18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 3455566777777776663 244455566666777776665541 133555667777777766555 34
Q ss_pred chhhhccCC---CCEecccCCcccc----ccchHHhhcc-ccccEEEcCCCcccceecccCCccccccccccccCCCCCC
Q 042822 391 PEELGKLTK---LRLLDLTNCFHLK----VIAANLIASF-TRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLPRL 462 (775)
Q Consensus 391 p~~i~~l~~---L~~L~l~~~~~l~----~~p~~~l~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L 462 (775)
+..+..+.+ |++|++++|.... .+... +..+ ++|++|++++|.+.+... ......+..+++|
T Consensus 98 ~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~~~---------~~~~~~~~~~~~L 167 (319)
T cd00116 98 CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGASC---------EALAKALRANRDL 167 (319)
T ss_pred HHHHHHHhccCcccEEEeeCCccchHHHHHHHHH-HHhCCCCceEEEcCCCcCCchHH---------HHHHHHHHhCCCc
Confidence 444444444 7777776663221 11222 4445 666777777666552111 1122344455566
Q ss_pred CEEEEEeeC
Q 042822 463 TTLEIAVEN 471 (775)
Q Consensus 463 ~~L~l~~~~ 471 (775)
++|+++++.
T Consensus 168 ~~L~l~~n~ 176 (319)
T cd00116 168 KELNLANNG 176 (319)
T ss_pred CEEECcCCC
Confidence 666665544
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.14 E-value=1.6e-12 Score=128.53 Aligned_cols=139 Identities=23% Similarity=0.330 Sum_probs=112.8
Q ss_pred CCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCC-CcccccccCccEEEcCC-CCCCC-
Q 042822 291 SSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSL-PSSIDLLLNLRTLCLDH-GTLGD- 367 (775)
Q Consensus 291 ~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~-~~l~~- 367 (775)
.++.++|..+- +....+.|..|.+. .+|+..|+.+++||.|||+.|.|+.+ |+.|..+.+|-.|.+.+ |.|++
T Consensus 56 ~GL~eVP~~LP-~~tveirLdqN~I~---~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l 131 (498)
T KOG4237|consen 56 KGLTEVPANLP-PETVEIRLDQNQIS---SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDL 131 (498)
T ss_pred CCcccCcccCC-CcceEEEeccCCcc---cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhh
Confidence 34566676542 23456788889888 79999999999999999999999976 88899999888887776 78988
Q ss_pred c-cccccCCcccEEEecCCCCcccc-hhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCc
Q 042822 368 I-TIIGELKNLEILSLIGSDIVEFP-EELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCF 434 (775)
Q Consensus 368 p-~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~ 434 (775)
| ..+++|..|+.|.+.-|++..++ ..+..|++|..|.+.+| .+..++.+.+..+.+++++.+..|.
T Consensus 132 ~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 132 PKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCc
Confidence 5 34889999999999988888655 45889999999999887 6788888778889999998877654
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.12 E-value=1.8e-11 Score=128.88 Aligned_cols=82 Identities=28% Similarity=0.297 Sum_probs=38.3
Q ss_pred hCCCcccEEEecCCCCC-CCCcccccccC---ccEEEcCCCCCCC------ccccccC-CcccEEEecCCCCc-----cc
Q 042822 327 TGMRELKVVDLTNMQLF-SLPSSIDLLLN---LRTLCLDHGTLGD------ITIIGEL-KNLEILSLIGSDIV-----EF 390 (775)
Q Consensus 327 ~~l~~L~~L~l~~~~~~-~lp~~i~~l~~---L~~L~L~~~~l~~------p~~i~~l-~~L~~L~l~~~~l~-----~l 390 (775)
..+++|+.|++++|.+. ..+..+..+.+ |++|++++|.+.. ...+..+ ++|+.|++++|.++ .+
T Consensus 78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 44555555555555554 22333333333 5555555555442 1223334 55555555555444 22
Q ss_pred chhhhccCCCCEecccCC
Q 042822 391 PEELGKLTKLRLLDLTNC 408 (775)
Q Consensus 391 p~~i~~l~~L~~L~l~~~ 408 (775)
+..+..+.+|++|++++|
T Consensus 158 ~~~~~~~~~L~~L~l~~n 175 (319)
T cd00116 158 AKALRANRDLKELNLANN 175 (319)
T ss_pred HHHHHhCCCcCEEECcCC
Confidence 333444455555555554
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.10 E-value=4.4e-12 Score=131.23 Aligned_cols=174 Identities=25% Similarity=0.317 Sum_probs=114.0
Q ss_pred eEEEEEcCCCCCCCCCC-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEEEcCC
Q 042822 284 YAISWIDSSGGELPEGL-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTLCLDH 362 (775)
Q Consensus 284 ~~l~l~~~~~~~lp~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 362 (775)
...+++.|.+.++|... .|..|..+.+..|.+. .+|..+ .++..|.+|||+.|.++.+|..++.|+ |++|-+++
T Consensus 78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r---~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEEACAFVSLESLILYHNCIR---TIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhccccccccCchHHHHHHHHHHHHHHhccce---ecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec
Confidence 34455556666666655 5666666666666655 455554 667777777777777777777766665 67777777
Q ss_pred CCCCC-ccccccCCcccEEEecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccceecc
Q 042822 363 GTLGD-ITIIGELKNLEILSLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKVED 441 (775)
Q Consensus 363 ~~l~~-p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~ 441 (775)
|+++. |+.|+.+..|..||.+.|.+..+|..++.+.+|+.|.+..| .+..+|.+ +..| .|..||++.|++.
T Consensus 153 Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn-~l~~lp~E-l~~L-pLi~lDfScNkis----- 224 (722)
T KOG0532|consen 153 NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEE-LCSL-PLIRLDFSCNKIS----- 224 (722)
T ss_pred CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHH-HhCC-ceeeeecccCcee-----
Confidence 77766 66677667777777777777777777777777777777665 55666666 5543 3666777666654
Q ss_pred cCCccccccccccccCCCCCCCEEEEEeeCCCCCCCcc
Q 042822 442 EGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPEGF 479 (775)
Q Consensus 442 ~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~ 479 (775)
..+..+.+|+.|+.|.|.+|.+.+-|..+
T Consensus 225 ---------~iPv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 225 ---------YLPVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred ---------ecchhhhhhhhheeeeeccCCCCCChHHH
Confidence 22356667777777777777666655543
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.10 E-value=5.1e-12 Score=130.71 Aligned_cols=150 Identities=25% Similarity=0.351 Sum_probs=127.1
Q ss_pred cccceeEEEEEcCCCCCCCCCC-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccE
Q 042822 279 ALKKCYAISWIDSSGGELPEGL-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRT 357 (775)
Q Consensus 279 ~~~~~~~l~l~~~~~~~lp~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~ 357 (775)
.+..+..+.+..|-+..+|..+ .+..|..|+++.|.+. .+|..+ ..| -|++|-+++|+++.+|..++.+.+|..
T Consensus 96 ~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS---~lp~~l-C~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ 170 (722)
T KOG0532|consen 96 AFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS---HLPDGL-CDL-PLKVLIVSNNKLTSLPEEIGLLPTLAH 170 (722)
T ss_pred HHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh---cCChhh-hcC-cceeEEEecCccccCCcccccchhHHH
Confidence 3445666777778888888877 8888999999999887 677776 344 489999999999999999998889999
Q ss_pred EEcCCCCCCC-ccccccCCcccEEEecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCccc
Q 042822 358 LCLDHGTLGD-ITIIGELKNLEILSLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVE 436 (775)
Q Consensus 358 L~L~~~~l~~-p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 436 (775)
|+.+.|.+.. |+.++.+..|+.|+++.|.+..+|+.++. -.|..||++.| ++..+|.. |.+|++||+|-|.+|.+.
T Consensus 171 ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~-LpLi~lDfScN-kis~iPv~-fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 171 LDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCS-LPLIRLDFSCN-KISYLPVD-FRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhC-CceeeeecccC-ceeecchh-hhhhhhheeeeeccCCCC
Confidence 9999999888 88899999999999999999999999884 46889999876 78899998 899999999999888765
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.95 E-value=5.2e-10 Score=103.17 Aligned_cols=108 Identities=21% Similarity=0.277 Sum_probs=33.3
Q ss_pred hCCCcccEEEecCCCCCCCCcccc-cccCccEEEcCCCCCCCccccccCCcccEEEecCCCCcccchhh-hccCCCCEec
Q 042822 327 TGMRELKVVDLTNMQLFSLPSSID-LLLNLRTLCLDHGTLGDITIIGELKNLEILSLIGSDIVEFPEEL-GKLTKLRLLD 404 (775)
Q Consensus 327 ~~l~~L~~L~l~~~~~~~lp~~i~-~l~~L~~L~L~~~~l~~p~~i~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~ 404 (775)
.+...++.|+|++|.|+.+. .++ .+.+|+.|++++|.++..+.+..+++|++|++++|.+++++..+ ..+++|++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 34556777777777777653 354 46677777777777777666777777777777777777776555 3567777777
Q ss_pred ccCCccccccch-HHhhccccccEEEcCCCccc
Q 042822 405 LTNCFHLKVIAA-NLIASFTRLEELYMSNCFVE 436 (775)
Q Consensus 405 l~~~~~l~~~p~-~~l~~L~~L~~L~l~~~~~~ 436 (775)
+++| .+..+.. ..++.+++|+.|++.+|.+.
T Consensus 95 L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 95 LSNN-KISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TTS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCC-cCCChHHhHHHHcCCCcceeeccCCccc
Confidence 7766 3333211 11556666777777666554
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.95 E-value=1.4e-10 Score=110.65 Aligned_cols=135 Identities=22% Similarity=0.309 Sum_probs=117.4
Q ss_pred CCCcccEEEecCCCCCCCCcccccccCccEEEcCCCCCCCccccccCCcccEEEecCCCCcccchhhhccCCCCEecccC
Q 042822 328 GMRELKVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGDITIIGELKNLEILSLIGSDIVEFPEELGKLTKLRLLDLTN 407 (775)
Q Consensus 328 ~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~ 407 (775)
..+.|..+||++|.|+.+-.+..-++.+|.|++++|.+....++..+++|++||+++|.++++-.+-.++.+.++|.+.+
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 44678999999999999989999999999999999999888889999999999999999988876667889999999999
Q ss_pred CccccccchHHhhccccccEEEcCCCcccceecccCCccccccccccccCCCCCCCEEEEEeeCCCCCCC
Q 042822 408 CFHLKVIAANLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPE 477 (775)
Q Consensus 408 ~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~ 477 (775)
| .+..+.. +++|-+|..|++++|.+. .-.....+++++.|+.+.+.+|.+..++.
T Consensus 362 N-~iE~LSG--L~KLYSLvnLDl~~N~Ie------------~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 362 N-KIETLSG--LRKLYSLVNLDLSSNQIE------------ELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred h-hHhhhhh--hHhhhhheeccccccchh------------hHHHhcccccccHHHHHhhcCCCccccch
Confidence 7 5666654 899999999999999876 22345789999999999999998877665
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.91 E-value=1.8e-09 Score=99.58 Aligned_cols=131 Identities=27% Similarity=0.273 Sum_probs=38.9
Q ss_pred CCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEEEcCCCCCCCc-ccc-
Q 042822 294 GELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGDI-TII- 371 (775)
Q Consensus 294 ~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~p-~~i- 371 (775)
...+...++.++|.|++.+|.+.. +. .+-..+.+|++|++++|.++.++ .+..+++|++|++++|.++.. +.+
T Consensus 10 ~~~~~~~n~~~~~~L~L~~n~I~~---Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~ 84 (175)
T PF14580_consen 10 EQIAQYNNPVKLRELNLRGNQIST---IE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLD 84 (175)
T ss_dssp ------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHH
T ss_pred cccccccccccccccccccccccc---cc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchH
Confidence 334444455556666666665542 21 12124566667777777766654 356666777777777776663 333
Q ss_pred ccCCcccEEEecCCCCcccc--hhhhccCCCCEecccCCccccccc---hHHhhccccccEEEc
Q 042822 372 GELKNLEILSLIGSDIVEFP--EELGKLTKLRLLDLTNCFHLKVIA---ANLIASFTRLEELYM 430 (775)
Q Consensus 372 ~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~l~~~p---~~~l~~L~~L~~L~l 430 (775)
..+++|++|++++|++..+- ..+..+++|++|++.+|... ..+ ..++..+++|+.||-
T Consensus 85 ~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 85 KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETT
T ss_pred HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCC
Confidence 34667777777776655332 34556677777777766432 222 224667777777763
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.77 E-value=6.4e-09 Score=112.74 Aligned_cols=169 Identities=27% Similarity=0.376 Sum_probs=77.6
Q ss_pred CCCccEEEcccCCCCCccccChhhhhCCC-cccEEEecCCCCCCCCcccccccCccEEEcCCCCCCC-ccccccCCcccE
Q 042822 302 CPQLELLLLSSKHSSVDVNIPRSFFTGMR-ELKVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGD-ITIIGELKNLEI 379 (775)
Q Consensus 302 ~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~-~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~-p~~i~~l~~L~~ 379 (775)
.+.++.|++.++... .++... ..+. +|+.|++++|.+..+|..++.+++|+.|++++|.+.+ |...+.+.+|+.
T Consensus 115 ~~~l~~L~l~~n~i~---~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 115 LTNLTSLDLDNNNIT---DIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred ccceeEEecCCcccc---cCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 344555555554444 343332 2232 4555555555555554445555555555555555554 333335555555
Q ss_pred EEecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccceecccCCccccccccccccCCC
Q 042822 380 LSLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPL 459 (775)
Q Consensus 380 L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l 459 (775)
|+++++++..+|..++.+..|++|.+++|. ....+.. +.++.++..+.+..+.+. ..+..++.+
T Consensus 191 L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~--------------~~~~~~~~l 254 (394)
T COG4886 191 LDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLE--------------DLPESIGNL 254 (394)
T ss_pred eeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceee--------------eccchhccc
Confidence 555555555555544444445555555442 2222222 444455554444444332 112334444
Q ss_pred CCCCEEEEEeeCCCCCCCccccccccceEEE
Q 042822 460 PRLTTLEIAVENDNALPEGFFVRELERFKIL 490 (775)
Q Consensus 460 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 490 (775)
++++.|+++++.+..++......+++.+++.
T Consensus 255 ~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s 285 (394)
T COG4886 255 SNLETLDLSNNQISSISSLGSLTNLRELDLS 285 (394)
T ss_pred cccceeccccccccccccccccCccCEEecc
Confidence 4455555555544444442233444444443
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.77 E-value=6.3e-09 Score=112.77 Aligned_cols=104 Identities=31% Similarity=0.451 Sum_probs=54.9
Q ss_pred CCCcccEEEecCCCCCCCCccccccc-CccEEEcCCCCCCC-ccccccCCcccEEEecCCCCcccchhhhccCCCCEecc
Q 042822 328 GMRELKVVDLTNMQLFSLPSSIDLLL-NLRTLCLDHGTLGD-ITIIGELKNLEILSLIGSDIVEFPEELGKLTKLRLLDL 405 (775)
Q Consensus 328 ~l~~L~~L~l~~~~~~~lp~~i~~l~-~L~~L~L~~~~l~~-p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 405 (775)
.+..++.|++.++.++++|...+.+. +|+.|+++++.+.. |..++.+++|+.|+++.|.+..+|...+.+.+|+.|++
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 33445555555555555555555553 55555555555555 34555555555555555555555555445555555555
Q ss_pred cCCccccccchHHhhccccccEEEcCCC
Q 042822 406 TNCFHLKVIAANLIASFTRLEELYMSNC 433 (775)
Q Consensus 406 ~~~~~l~~~p~~~l~~L~~L~~L~l~~~ 433 (775)
++| .+..+|.. ++.+..|++|.+++|
T Consensus 194 s~N-~i~~l~~~-~~~~~~L~~l~~~~N 219 (394)
T COG4886 194 SGN-KISDLPPE-IELLSALEELDLSNN 219 (394)
T ss_pred cCC-ccccCchh-hhhhhhhhhhhhcCC
Confidence 554 44555543 334444555555554
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=2.6e-09 Score=107.78 Aligned_cols=135 Identities=19% Similarity=0.150 Sum_probs=68.6
Q ss_pred hCCCcccEEEecCCCCCC---CCcccccccCccEEEcCCCCCCCcc---ccccCCcccEEEecCCCCc--ccchhhhccC
Q 042822 327 TGMRELKVVDLTNMQLFS---LPSSIDLLLNLRTLCLDHGTLGDIT---IIGELKNLEILSLIGSDIV--EFPEELGKLT 398 (775)
Q Consensus 327 ~~l~~L~~L~l~~~~~~~---lp~~i~~l~~L~~L~L~~~~l~~p~---~i~~l~~L~~L~l~~~~l~--~lp~~i~~l~ 398 (775)
..|++++.|||++|-+.. +-.-...|++|+.|+++.|.+..|. .-..+.+|+.|.+++|+++ .+-.-...++
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 344444444444443331 1122234455555555555544321 1224556666666666665 3333344567
Q ss_pred CCCEecccCCccccccchHHhhccccccEEEcCCCcccceecccCCccccccccccccCCCCCCCEEEEEeeCCCC
Q 042822 399 KLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNA 474 (775)
Q Consensus 399 ~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~ 474 (775)
+|..|++..|..+...... ..-+..|++|+|++|.+.. .......+.++.|+.|+++.+++.+
T Consensus 223 sl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~------------~~~~~~~~~l~~L~~Lnls~tgi~s 285 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLID------------FDQGYKVGTLPGLNQLNLSSTGIAS 285 (505)
T ss_pred cHHHhhhhcccccceecch-hhhhhHHhhccccCCcccc------------cccccccccccchhhhhccccCcch
Confidence 7777777766322222111 3345667777777766541 1223455666777777776665544
No 34
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.69 E-value=1.4e-09 Score=109.02 Aligned_cols=144 Identities=18% Similarity=0.221 Sum_probs=79.2
Q ss_pred ccccceEEEeccCccccc--cccc-ccccceEEeecccCCcccccccccccccccCcEEEeecCCCccccccCCCcccCC
Q 042822 519 HQSLRMLKLKLNCKTICS--RKLQ-GIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCD 595 (775)
Q Consensus 519 ~~~L~~L~l~~~~~~~~~--~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 595 (775)
+..|+.|+.+++...... ..++ ..++|+.|.+.+|...++........+++.|+.+.+.+|.... +........
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~---d~tL~sls~ 369 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLIT---DGTLASLSR 369 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceeh---hhhHhhhcc
Confidence 455566665553332111 1111 5677777777777666666555555566777777776665332 222222344
Q ss_pred cccccceeeccccccccccccc--ccCcccccCCCeEEeccCCCCCccccchhhcCCCCccEEEEecccchHH
Q 042822 596 AFPLLELLSLQNLINLKTICVD--RLSTESFAELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKE 666 (775)
Q Consensus 596 ~~p~L~~L~l~~~~~l~~~~~~--~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~~L~~ 666 (775)
.+|.|+.|.+++|...++-... .....+...|..+.+.+||.+++-. ...+..+++||.+++.+|..+..
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~-Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT-LEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH-HHHHhhCcccceeeeechhhhhh
Confidence 5677777777776654433110 1112345667777777777666532 23455566777777777766553
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.67 E-value=2.2e-09 Score=102.73 Aligned_cols=124 Identities=22% Similarity=0.276 Sum_probs=55.2
Q ss_pred ccceeEEEEEcCCCCCCCCCC-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEE
Q 042822 280 LKKCYAISWIDSSGGELPEGL-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTL 358 (775)
Q Consensus 280 ~~~~~~l~l~~~~~~~lp~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 358 (775)
++.+..+++++|.+..+-.+. -.+++|.|+++.|.+.. +. + +..+++|..|||++|.++++-..-.+|.+.++|
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~---v~-n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT---VQ-N-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceee---eh-h-hhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 334444455444444444433 33445555555544431 11 1 234444555555555444333333344444445
Q ss_pred EcCCCCCCCccccccCCcccEEEecCCCCcccc--hhhhccCCCCEecccCC
Q 042822 359 CLDHGTLGDITIIGELKNLEILSLIGSDIVEFP--EELGKLTKLRLLDLTNC 408 (775)
Q Consensus 359 ~L~~~~l~~p~~i~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~ 408 (775)
.|++|.+...+.++++.+|.+||+++|++..+- .+||+++.|+++.+.+|
T Consensus 358 ~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 358 KLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred ehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCC
Confidence 555544444444445555555555554444332 13444444444444443
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=9.4e-09 Score=103.80 Aligned_cols=191 Identities=23% Similarity=0.153 Sum_probs=133.4
Q ss_pred cccceeEEEEEcCCCCCCCC--CC-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcc--ccccc
Q 042822 279 ALKKCYAISWIDSSGGELPE--GL-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSS--IDLLL 353 (775)
Q Consensus 279 ~~~~~~~l~l~~~~~~~lp~--~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~--i~~l~ 353 (775)
..++++.+++.++..+..+. -. .|+++|.|+|+.|-+..- ..-..+...+++|+.|+++.|.+....++ -..+.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw-~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNW-FPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhH-HHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 35678889998888776663 22 899999999999855421 12245568899999999999988743322 24678
Q ss_pred CccEEEcCCCCCCC--c-cccccCCcccEEEecCC-CCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEE
Q 042822 354 NLRTLCLDHGTLGD--I-TIIGELKNLEILSLIGS-DIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELY 429 (775)
Q Consensus 354 ~L~~L~L~~~~l~~--p-~~i~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~ 429 (775)
+|+.|.+++|.+.. . .-...+++|+.|++.+| .+..--.....++.|++|++++|..+..-.-..++.++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 99999999999875 2 33456899999999998 33322233456789999999998554432112278899999999
Q ss_pred cCCCcccceecccCCccccccccccccCCCCCCCEEEEEeeCCCCCCC
Q 042822 430 MSNCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPE 477 (775)
Q Consensus 430 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~ 477 (775)
++.|.+...- ............+++|+.|.+..|.+...+.
T Consensus 278 ls~tgi~si~-------~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~s 318 (505)
T KOG3207|consen 278 LSSTGIASIA-------EPDVESLDKTHTFPKLEYLNISENNIRDWRS 318 (505)
T ss_pred ccccCcchhc-------CCCccchhhhcccccceeeecccCccccccc
Confidence 9888765111 1112233345567889999998887755443
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.51 E-value=2.6e-07 Score=104.95 Aligned_cols=105 Identities=23% Similarity=0.328 Sum_probs=89.2
Q ss_pred cccEEEecCCCCC-CCCcccccccCccEEEcCCCCCCC--ccccccCCcccEEEecCCCCc-ccchhhhccCCCCEeccc
Q 042822 331 ELKVVDLTNMQLF-SLPSSIDLLLNLRTLCLDHGTLGD--ITIIGELKNLEILSLIGSDIV-EFPEELGKLTKLRLLDLT 406 (775)
Q Consensus 331 ~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~L~~~~l~~--p~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~ 406 (775)
.++.|+|++|.+. .+|..++++++|++|+|++|.+.. |+.++.+++|++|++++|.+. .+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4778899999888 788889999999999999999875 678999999999999999888 789999999999999999
Q ss_pred CCccccccchHHhhc-cccccEEEcCCCccc
Q 042822 407 NCFHLKVIAANLIAS-FTRLEELYMSNCFVE 436 (775)
Q Consensus 407 ~~~~l~~~p~~~l~~-L~~L~~L~l~~~~~~ 436 (775)
+|...+.+|.. ++. ..++..+++.+|...
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCccc
Confidence 98777788887 655 356778888887654
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.50 E-value=2.4e-07 Score=105.25 Aligned_cols=104 Identities=24% Similarity=0.311 Sum_probs=87.9
Q ss_pred CccEEEcCCCCCCC--ccccccCCcccEEEecCCCCc-ccchhhhccCCCCEecccCCccccccchHHhhccccccEEEc
Q 042822 354 NLRTLCLDHGTLGD--ITIIGELKNLEILSLIGSDIV-EFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYM 430 (775)
Q Consensus 354 ~L~~L~L~~~~l~~--p~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l 430 (775)
.++.|+|++|.+.. |+.++++++|++|+|++|.+. .+|..++.+++|+.|++++|...+.+|.. ++++++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 47889999999876 788999999999999999988 89999999999999999999766778887 899999999999
Q ss_pred CCCcccceecccCCccccccccccccCC-CCCCCEEEEEeeC
Q 042822 431 SNCFVEWKVEDEGSSSKRSKASLDELMP-LPRLTTLEIAVEN 471 (775)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~-l~~L~~L~l~~~~ 471 (775)
++|.+.+.+| ..++. ..++..+++.+|.
T Consensus 498 s~N~l~g~iP-------------~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLSGRVP-------------AALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCcccccCC-------------hHHhhccccCceEEecCCc
Confidence 9999887777 44444 2456778887664
No 39
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.48 E-value=5.3e-09 Score=104.97 Aligned_cols=114 Identities=13% Similarity=0.131 Sum_probs=78.5
Q ss_pred ccccceEEeecccCCcccccccccccccccCcEEEeecCCCccccccCCCcc--cCCcccccceeecccccccccccccc
Q 042822 541 GIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIV--DCDAFPLLELLSLQNLINLKTICVDR 618 (775)
Q Consensus 541 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~--~~~~~p~L~~L~l~~~~~l~~~~~~~ 618 (775)
.++.|+.+++.+|....+....-...+++.|+.|.++.|..++.- +.... ....+..|+.+.+.+|+.+.+-..
T Consensus 344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~--gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L-- 419 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE--GIRHLSSSSCSLEGLEVLELDNCPLITDATL-- 419 (483)
T ss_pred CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhh--hhhhhhhccccccccceeeecCCCCchHHHH--
Confidence 567778888877766555433333456888888888888765532 11111 234567889999999988765421
Q ss_pred cCcccccCCCeEEeccCCCCCccccchhhcCCCCccEEEE
Q 042822 619 LSTESFAELRTMKVENCDELSNIFVLSTTKCLPSLQRIAV 658 (775)
Q Consensus 619 ~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l 658 (775)
.....+++|+.+++.+|...+.-+......++|+++....
T Consensus 420 e~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 420 EHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred HHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 2235678999999999999988777667788888877654
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.38 E-value=3.1e-07 Score=69.40 Aligned_cols=56 Identities=34% Similarity=0.459 Sum_probs=25.7
Q ss_pred cccEEEecCCCCCCCC-cccccccCccEEEcCCCCCCC--ccccccCCcccEEEecCCC
Q 042822 331 ELKVVDLTNMQLFSLP-SSIDLLLNLRTLCLDHGTLGD--ITIIGELKNLEILSLIGSD 386 (775)
Q Consensus 331 ~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~l~~--p~~i~~l~~L~~L~l~~~~ 386 (775)
+|++|++++|++..+| ..+..+++|++|++++|.++. +..+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 3444444444444443 233444444444444444444 2334455555555555443
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.36 E-value=4.3e-07 Score=68.57 Aligned_cols=60 Identities=38% Similarity=0.558 Sum_probs=40.5
Q ss_pred CCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCC-cccccccCccEEEcCCCCC
Q 042822 303 PQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLP-SSIDLLLNLRTLCLDHGTL 365 (775)
Q Consensus 303 ~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~l 365 (775)
++|++|++++|.+. .+|.+.|..+++|++|++++|.+..+| ..+.++++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~---~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLT---EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTES---EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCC---ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 45677777777665 566666677777777777777777654 4566777777777777653
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.3e-08 Score=97.61 Aligned_cols=83 Identities=29% Similarity=0.398 Sum_probs=60.5
Q ss_pred CccEEEcCCCCCCC--c-cccccCCcccEEEecCCCCc-ccchhhhccCCCCEecccCCccccccch-HHhhccccccEE
Q 042822 354 NLRTLCLDHGTLGD--I-TIIGELKNLEILSLIGSDIV-EFPEELGKLTKLRLLDLTNCFHLKVIAA-NLIASFTRLEEL 428 (775)
Q Consensus 354 ~L~~L~L~~~~l~~--p-~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~~p~-~~l~~L~~L~~L 428 (775)
.|++|||+...++. . .-++.+.+|+.|.+.|..+. .+-..|.+-.+|+.|++++|..++.... -.+.+++.|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 48888888887765 2 33567788888888888776 5556677778888888888876665432 236778888888
Q ss_pred EcCCCccc
Q 042822 429 YMSNCFVE 436 (775)
Q Consensus 429 ~l~~~~~~ 436 (775)
++++|...
T Consensus 266 NlsWc~l~ 273 (419)
T KOG2120|consen 266 NLSWCFLF 273 (419)
T ss_pred CchHhhcc
Confidence 88888655
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.29 E-value=8.4e-08 Score=104.07 Aligned_cols=128 Identities=23% Similarity=0.340 Sum_probs=81.5
Q ss_pred CCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEEEcCCCCCCCccccccCCcccEEE
Q 042822 302 CPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGDITIIGELKNLEILS 381 (775)
Q Consensus 302 ~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~p~~i~~l~~L~~L~ 381 (775)
+..+..+.+..|.+. .+- +-+..+++|.+|++.+|.+..+...+..+.+|++|++++|.|+....+..+..|+.|+
T Consensus 71 l~~l~~l~l~~n~i~---~~~-~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIA---KIL-NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhh---hhh-cccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhhe
Confidence 444555555555443 211 1125667777777777777776655677777777777777777777777777777777
Q ss_pred ecCCCCcccchhhhccCCCCEecccCCccccccch-HHhhccccccEEEcCCCccc
Q 042822 382 LIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAA-NLIASFTRLEELYMSNCFVE 436 (775)
Q Consensus 382 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~-~~l~~L~~L~~L~l~~~~~~ 436 (775)
+++|.++.++ ++..+.+|+.+++++| .+..+.. . +..+.+|+.+.+.+|.+.
T Consensus 147 l~~N~i~~~~-~~~~l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 147 LSGNLISDIS-GLESLKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred eccCcchhcc-CCccchhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCchh
Confidence 7777776664 3455777777777776 3444443 1 256666777776666543
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.28 E-value=1.1e-07 Score=103.31 Aligned_cols=121 Identities=24% Similarity=0.291 Sum_probs=69.7
Q ss_pred eeEEEEEcCCCCCCCC-CCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEEEcC
Q 042822 283 CYAISWIDSSGGELPE-GLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTLCLD 361 (775)
Q Consensus 283 ~~~l~l~~~~~~~lp~-~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~ 361 (775)
+..+.+..+.+..+-. .-.+++|..|++..|.+. .+... +..+.+|++|++++|.|+.+. .+..+..|+.|++.
T Consensus 74 l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~---~i~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 74 LKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIE---KIENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLS 148 (414)
T ss_pred HHhhccchhhhhhhhcccccccceeeeeccccchh---hcccc-hhhhhcchheecccccccccc-chhhccchhhheec
Confidence 3334444444444222 225666666666666655 22221 245666666666666666553 34555566666666
Q ss_pred CCCCCCccccccCCcccEEEecCCCCcccchh-hhccCCCCEecccCC
Q 042822 362 HGTLGDITIIGELKNLEILSLIGSDIVEFPEE-LGKLTKLRLLDLTNC 408 (775)
Q Consensus 362 ~~~l~~p~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~ 408 (775)
+|.+...+.+..+.+|+.+++++|.++.+... ...+.+|+.+.+.+|
T Consensus 149 ~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 149 GNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred cCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCC
Confidence 66666666666666666666666666655443 456666666666665
No 45
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.23 E-value=2.8e-07 Score=90.92 Aligned_cols=94 Identities=14% Similarity=0.066 Sum_probs=45.3
Q ss_pred cccccceEEeecccCCcccccccc--cccccccCcEEEeecCCCccccccCCCcc---cCCcccccceeecccccccccc
Q 042822 540 QGIRKVEYLCLDKFQGVKNILFEL--DTQGFSQLKHLLVQNNPDLLFIVDSREIV---DCDAFPLLELLSLQNLINLKTI 614 (775)
Q Consensus 540 ~~l~~L~~L~l~~~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~---~~~~~p~L~~L~l~~~~~l~~~ 614 (775)
..+++|+.|+|.+|.....-.... ....+++|+.|++.+|- ++. .+...+ ....+|+|+.|.+.++.--.+-
T Consensus 210 ~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~~--~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da 286 (382)
T KOG1909|consen 210 EHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LEN--EGAIAFVDALKESAPSLEVLELAGNEITRDA 286 (382)
T ss_pred HhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc-ccc--ccHHHHHHHHhccCCCCceeccCcchhHHHH
Confidence 356667777776664332211110 11235667777777764 110 000000 1234777777777775432111
Q ss_pred c-ccccCcccccCCCeEEeccCC
Q 042822 615 C-VDRLSTESFAELRTMKVENCD 636 (775)
Q Consensus 615 ~-~~~~~~~~~~~L~~L~l~~C~ 636 (775)
. .-.......|.|++|++++|.
T Consensus 287 ~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 287 ALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHHHHhcchhhHHhcCCccc
Confidence 0 000112236788888888863
No 46
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.15 E-value=5.4e-05 Score=91.84 Aligned_cols=213 Identities=14% Similarity=0.182 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHhc-CCcEEEEEEcCCCchh--h-hhccccCCCCCCCcEEEEEeCChHH---HhhcCCCceEEcC----C
Q 042822 17 HARASMLYAQLKK-SRKILVILDNVWTELH--L-KDVGIPFGDEHKGCKVLLTTRGRDL---LSRMGSEADVRMD----I 85 (775)
Q Consensus 17 ~~~~~~l~~~l~~-~kr~LlVlDdv~~~~~--~-~~l~~~~~~~~~gs~iivTTR~~~v---~~~~~~~~~~~l~----~ 85 (775)
......+...+.+ +.+++|||||+...++ . +.+..-+.....+-++|||||...- ..........++. +
T Consensus 106 ~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~ 185 (903)
T PRK04841 106 SSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLA 185 (903)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCC
Confidence 3445555555553 5899999999977531 1 2232222333456788899998421 1111112345555 8
Q ss_pred CCHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHhCCCchhHHHHHHHHhcCCcHHHHHHHHHHhcCCCcCcchhhhhhHH
Q 042822 86 LNEEEAWRLFEVKLGNDGLIRRMKSTATQIVKQCGGLPIALEPIAKALRNKTESECWKNALHELRMPTENNFHRELGKAY 165 (775)
Q Consensus 86 L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~ 165 (775)
|+.+|+.++|....+..-. .+...+|.+.|+|.|+++..++..++...... ......+..... . .+.
T Consensus 186 f~~~e~~~ll~~~~~~~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~~~~~~~~~~----~---~~~ 252 (903)
T PRK04841 186 FDHQEAQQFFDQRLSSPIE----AAESSRLCDDVEGWATALQLIALSARQNNSSL--HDSARRLAGINA----S---HLS 252 (903)
T ss_pred CCHHHHHHHHHhccCCCCC----HHHHHHHHHHhCChHHHHHHHHHHHhhCCCch--hhhhHhhcCCCc----h---hHH
Confidence 9999999999887654332 24478899999999999999888776543211 111111111000 1 233
Q ss_pred HHHH-hhHhccCchhHHHHHHhcCCCCCCCChhhHHHHHhhccccccccHHHHHHHHHHHHHHHHHccceec-c-cccce
Q 042822 166 TAIK-LSYDALKGEQLKKIFQLCSLMPKSFFASDLFKYCIGLGIFRGINMEDARNTLYTLVHELKDSCLLLE-G-YSCRE 242 (775)
Q Consensus 166 ~~l~-~sy~~L~~~~lk~cf~~~~~fp~~~~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~L~~~sl~~~-~-~~~~~ 242 (775)
..+. --++.||++ .++.+...|+++ .+.. .+.. .+... .++ .+.+++|.+.+++.. . ....+
T Consensus 253 ~~l~~~v~~~l~~~-~~~~l~~~a~~~-~~~~-~l~~-----~l~~~---~~~----~~~L~~l~~~~l~~~~~~~~~~~ 317 (903)
T PRK04841 253 DYLVEEVLDNVDLE-TRHFLLRCSVLR-SMND-ALIV-----RVTGE---ENG----QMRLEELERQGLFIQRMDDSGEW 317 (903)
T ss_pred HHHHHHHHhcCCHH-HHHHHHHhcccc-cCCH-HHHH-----HHcCC---CcH----HHHHHHHHHCCCeeEeecCCCCE
Confidence 3333 347899998 799999999987 3332 2221 11111 112 345788888998653 2 23458
Q ss_pred EEehHHHHHHHHHHH
Q 042822 243 FSMHDVVHDVAILIA 257 (775)
Q Consensus 243 ~~mHdlv~~l~~~~~ 257 (775)
|+.|++++++.....
T Consensus 318 yr~H~L~r~~l~~~l 332 (903)
T PRK04841 318 FRYHPLFASFLRHRC 332 (903)
T ss_pred EehhHHHHHHHHHHH
Confidence 999999999998765
No 47
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.12 E-value=5.2e-07 Score=89.03 Aligned_cols=161 Identities=21% Similarity=0.223 Sum_probs=79.0
Q ss_pred CCCCccEEEcccCCCCCcc-ccChhhhhCCCcccEEEecCCCCC----CCCccc-------ccccCccEEEcCCCCCCC-
Q 042822 301 ECPQLELLLLSSKHSSVDV-NIPRSFFTGMRELKVVDLTNMQLF----SLPSSI-------DLLLNLRTLCLDHGTLGD- 367 (775)
Q Consensus 301 ~~~~Lr~L~l~~~~~~~~~-~l~~~~~~~l~~L~~L~l~~~~~~----~lp~~i-------~~l~~L~~L~L~~~~l~~- 367 (775)
.+..+..+++++|.+.... ......+.+.++||..++++-... ++|+.+ -.+++|++|+|+.|-+..
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 3445555666665543211 111222345556666666553222 333332 234566666666666543
Q ss_pred -cc----ccccCCcccEEEecCCCCcccch--------------hhhccCCCCEecccCCccccccchH----Hhhcccc
Q 042822 368 -IT----IIGELKNLEILSLIGSDIVEFPE--------------ELGKLTKLRLLDLTNCFHLKVIAAN----LIASFTR 424 (775)
Q Consensus 368 -p~----~i~~l~~L~~L~l~~~~l~~lp~--------------~i~~l~~L~~L~l~~~~~l~~~p~~----~l~~L~~ 424 (775)
++ -+.++..|++|+|.+|.+...-. -++.-++|+.+....| .+...+.. ++...+.
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSHPT 186 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhccc
Confidence 32 24456666666666665542211 1233455666655554 34333321 2444556
Q ss_pred ccEEEcCCCcccceecccCCccccccccccccCCCCCCCEEEEEeeC
Q 042822 425 LEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVEN 471 (775)
Q Consensus 425 L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~ 471 (775)
|+++.+..|.+. ..........+.++++|+.|++..|-
T Consensus 187 leevr~~qN~I~---------~eG~~al~eal~~~~~LevLdl~DNt 224 (382)
T KOG1909|consen 187 LEEVRLSQNGIR---------PEGVTALAEALEHCPHLEVLDLRDNT 224 (382)
T ss_pred cceEEEeccccc---------CchhHHHHHHHHhCCcceeeecccch
Confidence 666666655443 11122344556666666666666553
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.07 E-value=9e-08 Score=102.50 Aligned_cols=127 Identities=24% Similarity=0.293 Sum_probs=84.0
Q ss_pred cccEEEecCCCCCCCCcccccccCccEEEcCCCCCCCccccccCCcccEEEecCCCCcccchh-hhccCCCCEecccCCc
Q 042822 331 ELKVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGDITIIGELKNLEILSLIGSDIVEFPEE-LGKLTKLRLLDLTNCF 409 (775)
Q Consensus 331 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~p~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 409 (775)
.|.+.++++|.+..+-.++.-+++|+.|+|++|.+.....+..|.+|++|||+.|.++.+|.- ...+ +|+.|.+++|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN- 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN- 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeeccc-
Confidence 466667777777666666777777778888877777766777777778888877777777642 2222 3777777776
Q ss_pred cccccchHHhhccccccEEEcCCCcccceecccCCccccccccccccCCCCCCCEEEEEeeCCC
Q 042822 410 HLKVIAANLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDN 473 (775)
Q Consensus 410 ~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~ 473 (775)
-++.+-. +.+|.+|+.|++++|-+.. ...+.-|..+..|+.|.+.+|.+.
T Consensus 243 ~l~tL~g--ie~LksL~~LDlsyNll~~------------hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 243 ALTTLRG--IENLKSLYGLDLSYNLLSE------------HSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HHHhhhh--HHhhhhhhccchhHhhhhc------------chhhhHHHHHHHHHHHhhcCCccc
Confidence 4555543 6777777777777775542 122344555566777777776544
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=5.8e-07 Score=86.47 Aligned_cols=173 Identities=21% Similarity=0.209 Sum_probs=113.7
Q ss_pred cceeEEEEEcCCCCC--CCCCC-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCC-CCC--CCcccccccC
Q 042822 281 KKCYAISWIDSSGGE--LPEGL-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQ-LFS--LPSSIDLLLN 354 (775)
Q Consensus 281 ~~~~~l~l~~~~~~~--lp~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~-~~~--lp~~i~~l~~ 354 (775)
+++++++++...+.. +.... .|++|+.|.+.++.... .+...+ .+-.+|+.|+++.++ +++ +---+.+++.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD--~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD--PIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSR 261 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc--HHHHHH-hccccceeeccccccccchhHHHHHHHhhhh
Confidence 457788886655532 22222 68888888888886654 343333 566788888888875 332 2223567888
Q ss_pred ccEEEcCCCCCCCc------cccccCCcccEEEecCC--CCc--ccchhhhccCCCCEecccCCccccccchHHhhcccc
Q 042822 355 LRTLCLDHGTLGDI------TIIGELKNLEILSLIGS--DIV--EFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTR 424 (775)
Q Consensus 355 L~~L~L~~~~l~~p------~~i~~l~~L~~L~l~~~--~l~--~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~ 424 (775)
|..|+++.|.+..+ ..|+ .+|..|+++|+ ++. .+..-..++++|.+||+++|..++.--..++-+++.
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~ 339 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY 339 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcch
Confidence 88888888876542 2222 46778888887 222 333345678888899998887666543334778888
Q ss_pred ccEEEcCCCcccceecccCCccccccccccccCCCCCCCEEEEEee
Q 042822 425 LEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVE 470 (775)
Q Consensus 425 L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~ 470 (775)
|++|.++.|+.. + ...+-++...+.|.+|++.+.
T Consensus 340 L~~lSlsRCY~i--~----------p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 340 LQHLSLSRCYDI--I----------PETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred heeeehhhhcCC--C----------hHHeeeeccCcceEEEEeccc
Confidence 888888888643 1 234566777888888887653
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.01 E-value=5.5e-06 Score=57.10 Aligned_cols=37 Identities=38% Similarity=0.566 Sum_probs=18.2
Q ss_pred cccEEEecCCCCCCCCcccccccCccEEEcCCCCCCC
Q 042822 331 ELKVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGD 367 (775)
Q Consensus 331 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~ 367 (775)
+|++|++++|+++.+|..+++|++|++|++++|.+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 4555555555555555445555555555555554443
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.00 E-value=2.3e-06 Score=96.81 Aligned_cols=147 Identities=19% Similarity=0.238 Sum_probs=100.3
Q ss_pred ccceeEEEEEcCCC--CCCCCCC--CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCc
Q 042822 280 LKKCYAISWIDSSG--GELPEGL--ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNL 355 (775)
Q Consensus 280 ~~~~~~l~l~~~~~--~~lp~~~--~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L 355 (775)
..++++|++.+... ..-|..+ .+|.||+|.+.+-.... .-....+.++++|+.||+|+++++.+ .++++|++|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~--~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknL 197 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN--DDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNL 197 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc--hhHHHHhhccCccceeecCCCCccCc-HHHhccccH
Confidence 35678888866432 1111112 68999999999865543 11234567899999999999999988 789999999
Q ss_pred cEEEcCCCCCCC---ccccccCCcccEEEecCCCCcccchhh-------hccCCCCEecccCCccccccchHHhhccccc
Q 042822 356 RTLCLDHGTLGD---ITIIGELKNLEILSLIGSDIVEFPEEL-------GKLTKLRLLDLTNCFHLKVIAANLIASFTRL 425 (775)
Q Consensus 356 ~~L~L~~~~l~~---p~~i~~l~~L~~L~l~~~~l~~lp~~i-------~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L 425 (775)
++|.+++-.+.. ...+.+|++|++||+|......-+..+ ..|++|+.||.++...-..+-...+..-++|
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L 277 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL 277 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence 999999888765 567889999999999987444333211 2478888888887644333433333334444
Q ss_pred cEEE
Q 042822 426 EELY 429 (775)
Q Consensus 426 ~~L~ 429 (775)
+.+.
T Consensus 278 ~~i~ 281 (699)
T KOG3665|consen 278 QQIA 281 (699)
T ss_pred hhhh
Confidence 4443
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=8.7e-07 Score=85.29 Aligned_cols=82 Identities=27% Similarity=0.389 Sum_probs=52.9
Q ss_pred hCCCcccEEEecCCCCC---CCCcccccccCccEEEcCCCCCCC-cccc-ccCCcccEEEecCCCCc--ccchhhhccCC
Q 042822 327 TGMRELKVVDLTNMQLF---SLPSSIDLLLNLRTLCLDHGTLGD-ITII-GELKNLEILSLIGSDIV--EFPEELGKLTK 399 (775)
Q Consensus 327 ~~l~~L~~L~l~~~~~~---~lp~~i~~l~~L~~L~L~~~~l~~-p~~i-~~l~~L~~L~l~~~~l~--~lp~~i~~l~~ 399 (775)
..+..++.+||.+|.++ ++...+.+|++|++|+++.|++.. +... -.+++|++|-+.|+.+. ..-.....++.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 45677888888888877 344445678888888888887655 3333 35667777777776543 44444555555
Q ss_pred CCEecccCC
Q 042822 400 LRLLDLTNC 408 (775)
Q Consensus 400 L~~L~l~~~ 408 (775)
++.|.++.|
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 555555544
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.91 E-value=5e-05 Score=79.09 Aligned_cols=32 Identities=25% Similarity=0.260 Sum_probs=15.8
Q ss_pred ccccceEEEeccCcccccccccccccceEEeecc
Q 042822 519 HQSLRMLKLKLNCKTICSRKLQGIRKVEYLCLDK 552 (775)
Q Consensus 519 ~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~ 552 (775)
+++|+.|.+.++.....|..+ ..+|++|+++.
T Consensus 155 PsSLk~L~Is~c~~i~LP~~L--P~SLk~L~ls~ 186 (426)
T PRK15386 155 SPSLKTLSLTGCSNIILPEKL--PESLQSITLHI 186 (426)
T ss_pred CCcccEEEecCCCcccCcccc--cccCcEEEecc
Confidence 345666666554444333332 24556666554
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.86 E-value=2e-05 Score=54.30 Aligned_cols=33 Identities=42% Similarity=0.646 Sum_probs=16.4
Q ss_pred cccEEEecCCCCcccchhhhccCCCCEecccCC
Q 042822 376 NLEILSLIGSDIVEFPEELGKLTKLRLLDLTNC 408 (775)
Q Consensus 376 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~ 408 (775)
+|++|++++|+++.+|..+++|++|++|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 445555555555555554555555555555554
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.79 E-value=9.3e-07 Score=94.97 Aligned_cols=121 Identities=26% Similarity=0.197 Sum_probs=59.2
Q ss_pred eeEEEEEcCCCCCCCCCC-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEEEcC
Q 042822 283 CYAISWIDSSGGELPEGL-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTLCLD 361 (775)
Q Consensus 283 ~~~l~l~~~~~~~lp~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~ 361 (775)
+...+.+.|.+..+-... -++.++.|+|+.|... .. +.+..|++|+.|||++|.+..+|.--..-.+|+.|.++
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~---~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFT---KV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhh---hh--HHHHhcccccccccccchhccccccchhhhhheeeeec
Confidence 334444444443333333 3455566666665543 11 13355566666666666655554321111225566666
Q ss_pred CCCCCCccccccCCcccEEEecCCCCcccc--hhhhccCCCCEecccCC
Q 042822 362 HGTLGDITIIGELKNLEILSLIGSDIVEFP--EELGKLTKLRLLDLTNC 408 (775)
Q Consensus 362 ~~~l~~p~~i~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~ 408 (775)
+|.++...+|.+|++|+.||+++|-+.... .-++.|..|+.|.|.||
T Consensus 241 nN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 241 NNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred ccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 665555555556666666666555333111 12444555555555554
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.69 E-value=0.00012 Score=76.34 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=8.5
Q ss_pred CCcccEEEecCCCCCCCC
Q 042822 329 MRELKVVDLTNMQLFSLP 346 (775)
Q Consensus 329 l~~L~~L~l~~~~~~~lp 346 (775)
+.+++.|++++|.++.+|
T Consensus 51 ~~~l~~L~Is~c~L~sLP 68 (426)
T PRK15386 51 ARASGRLYIKDCDIESLP 68 (426)
T ss_pred hcCCCEEEeCCCCCcccC
Confidence 344444444444444444
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.68 E-value=2.4e-05 Score=88.75 Aligned_cols=134 Identities=21% Similarity=0.224 Sum_probs=91.3
Q ss_pred CCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCC--CCCcccccccCccEEEcCCCCCCCccccccCCcccE
Q 042822 302 CPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLF--SLPSSIDLLLNLRTLCLDHGTLGDITIIGELKNLEI 379 (775)
Q Consensus 302 ~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~L~~~~l~~p~~i~~l~~L~~ 379 (775)
-.+|+.|+++|...... .-|..+..-+|.|+.|.+++-.+. ++-.-..++++|+.||+++++++...++++|+|||.
T Consensus 121 r~nL~~LdI~G~~~~s~-~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSN-GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhc-cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHH
Confidence 45788888888554321 344555567889999998887665 223334578888999999998888888889999999
Q ss_pred EEecCCCCcccc--hhhhccCCCCEecccCCcccccc--chH---HhhccccccEEEcCCCccc
Q 042822 380 LSLIGSDIVEFP--EELGKLTKLRLLDLTNCFHLKVI--AAN---LIASFTRLEELYMSNCFVE 436 (775)
Q Consensus 380 L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~l~~~--p~~---~l~~L~~L~~L~l~~~~~~ 436 (775)
|.+.+-.+..-. ..+-+|++|+.||+|.......- ... .-..|++|+.||.+++.+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 888776555322 35678888899988864332211 110 0124788888888876554
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=1.6e-05 Score=76.73 Aligned_cols=83 Identities=23% Similarity=0.325 Sum_probs=42.7
Q ss_pred CCcccEEEecCCCCc---ccchhhhccCCCCEecccCCccccccchHHh-hccccccEEEcCCCcccceecccCCccccc
Q 042822 374 LKNLEILSLIGSDIV---EFPEELGKLTKLRLLDLTNCFHLKVIAANLI-ASFTRLEELYMSNCFVEWKVEDEGSSSKRS 449 (775)
Q Consensus 374 l~~L~~L~l~~~~l~---~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l-~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 449 (775)
+++++.||+.+|.++ ++-.-+.+|+.|++|+++.|.....+.. + ..+.+|+.|-+.+..+.|...
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~--lp~p~~nl~~lVLNgT~L~w~~~--------- 138 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--LPLPLKNLRVLVLNGTGLSWTQS--------- 138 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc--CcccccceEEEEEcCCCCChhhh---------
Confidence 455666666666554 2333345666666666665532111111 1 134566666666666665433
Q ss_pred cccccccCCCCCCCEEEEEee
Q 042822 450 KASLDELMPLPRLTTLEIAVE 470 (775)
Q Consensus 450 ~~~l~~l~~l~~L~~L~l~~~ 470 (775)
-..+..++.++.|.++.|
T Consensus 139 ---~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 139 ---TSSLDDLPKVTELHMSDN 156 (418)
T ss_pred ---hhhhhcchhhhhhhhccc
Confidence 134455566666666544
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.61 E-value=4.3e-06 Score=71.24 Aligned_cols=88 Identities=20% Similarity=0.294 Sum_probs=48.0
Q ss_pred CCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEEEcCCCCCCC-ccccccCCcccEE
Q 042822 302 CPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGD-ITIIGELKNLEIL 380 (775)
Q Consensus 302 ~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~-p~~i~~l~~L~~L 380 (775)
...|...++++|.+. .+|..+-.+++.++.|++++|.++++|..+..++.||.|+++.|.+.. |.-|..|.+|-+|
T Consensus 52 ~~el~~i~ls~N~fk---~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 52 GYELTKISLSDNGFK---KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred CceEEEEecccchhh---hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence 344555555555544 455555444555555666666666666555555555555555555544 4445555555555
Q ss_pred EecCCCCcccch
Q 042822 381 SLIGSDIVEFPE 392 (775)
Q Consensus 381 ~l~~~~l~~lp~ 392 (775)
+..++.+..+|-
T Consensus 129 ds~~na~~eid~ 140 (177)
T KOG4579|consen 129 DSPENARAEIDV 140 (177)
T ss_pred cCCCCccccCcH
Confidence 555555445544
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.44 E-value=1.6e-05 Score=67.76 Aligned_cols=89 Identities=20% Similarity=0.230 Sum_probs=52.5
Q ss_pred hCCCcccEEEecCCCCCCCCcccccc-cCccEEEcCCCCCCC-ccccccCCcccEEEecCCCCcccchhhhccCCCCEec
Q 042822 327 TGMRELKVVDLTNMQLFSLPSSIDLL-LNLRTLCLDHGTLGD-ITIIGELKNLEILSLIGSDIVEFPEELGKLTKLRLLD 404 (775)
Q Consensus 327 ~~l~~L~~L~l~~~~~~~lp~~i~~l-~~L~~L~L~~~~l~~-p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 404 (775)
....+|...++++|.+..+|..+... +.+.+|++++|.+.+ |.++..++.|+.|+++.|.+...|.-|..|.+|-.|+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 34456666666666666666655432 356666666666665 5556666666666666666666666666666666666
Q ss_pred ccCCccccccch
Q 042822 405 LTNCFHLKVIAA 416 (775)
Q Consensus 405 l~~~~~l~~~p~ 416 (775)
..++ -...+|-
T Consensus 130 s~~n-a~~eid~ 140 (177)
T KOG4579|consen 130 SPEN-ARAEIDV 140 (177)
T ss_pred CCCC-ccccCcH
Confidence 5554 3334443
No 61
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.42 E-value=0.0047 Score=62.98 Aligned_cols=131 Identities=18% Similarity=0.242 Sum_probs=81.7
Q ss_pred hHHHHhCCCCccccHHHHHHHHHH----HHhcCCcEEEEEEcCCCch--hhhhccccC---CCCCCCcEEEEEeCChHHH
Q 042822 2 EIAEQIGLTLDKETEHARASMLYA----QLKKSRKILVILDNVWTEL--HLKDVGIPF---GDEHKGCKVLLTTRGRDLL 72 (775)
Q Consensus 2 ~i~~~l~~~~~~~~~~~~~~~l~~----~l~~~kr~LlVlDdv~~~~--~~~~l~~~~---~~~~~gs~iivTTR~~~v~ 72 (775)
.|+..+|.+.+..+.......+.+ ...++++.+||+||+|... .++.+..-. .++.....|++|.... ..
T Consensus 90 ~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~ 168 (269)
T TIGR03015 90 MVAADFGLETEGRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FR 168 (269)
T ss_pred HHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HH
Confidence 577788886654444444444443 3345789999999999864 344443211 1122233455655432 22
Q ss_pred hhcC----------CCceEEcCCCCHHHHHHHHHHHh---CCCCCcchhhHHHHHHHHHhCCCchhHHHHHHHH
Q 042822 73 SRMG----------SEADVRMDILNEEEAWRLFEVKL---GNDGLIRRMKSTATQIVKQCGGLPIALEPIAKAL 133 (775)
Q Consensus 73 ~~~~----------~~~~~~l~~L~~~~~~~Lf~~~a---~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L 133 (775)
.... ....+++++++.+|..+++...+ +......=-.+..+.|.+.++|.|..|..++..+
T Consensus 169 ~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 169 ETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 1111 13467899999999999998876 2211111124678999999999999999888776
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.39 E-value=3.2e-05 Score=73.79 Aligned_cols=86 Identities=31% Similarity=0.334 Sum_probs=44.8
Q ss_pred CCcccEEEecCCCCC-----CCCcccccccCccEEEcCCCCCC---C--c-------cccccCCcccEEEecCCCCc-cc
Q 042822 329 MRELKVVDLTNMQLF-----SLPSSIDLLLNLRTLCLDHGTLG---D--I-------TIIGELKNLEILSLIGSDIV-EF 390 (775)
Q Consensus 329 l~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~L~~~~l~---~--p-------~~i~~l~~L~~L~l~~~~l~-~l 390 (775)
+..+..+|||+|.|. .+...|.+-.+|+..+++.-... + + +.+-+|++|+..+++.|-+. +.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 445555566665554 23334445555666655543211 1 1 23445666777777666443 33
Q ss_pred ch----hhhccCCCCEecccCCccccccc
Q 042822 391 PE----ELGKLTKLRLLDLTNCFHLKVIA 415 (775)
Q Consensus 391 p~----~i~~l~~L~~L~l~~~~~l~~~p 415 (775)
|+ -|.+-+.|.||.+++| .++.+.
T Consensus 109 ~e~L~d~is~~t~l~HL~l~Nn-GlGp~a 136 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNN-GLGPIA 136 (388)
T ss_pred chHHHHHHhcCCCceeEEeecC-CCCccc
Confidence 33 3455667777777666 444443
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.27 E-value=0.0004 Score=63.79 Aligned_cols=81 Identities=27% Similarity=0.431 Sum_probs=43.5
Q ss_pred hCCCcccEEEecCCCCCCCCcccc-cccCccEEEcCCCCCCC---ccccccCCcccEEEecCCCCcccch----hhhccC
Q 042822 327 TGMRELKVVDLTNMQLFSLPSSID-LLLNLRTLCLDHGTLGD---ITIIGELKNLEILSLIGSDIVEFPE----ELGKLT 398 (775)
Q Consensus 327 ~~l~~L~~L~l~~~~~~~lp~~i~-~l~~L~~L~L~~~~l~~---p~~i~~l~~L~~L~l~~~~l~~lp~----~i~~l~ 398 (775)
..++.|.+|.+.+|.|+.+-..+. .+++|..|.+.+|++.. ...+..++.|++|.+-+|.++.-+. .+..++
T Consensus 61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp 140 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLP 140 (233)
T ss_pred CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecC
Confidence 455555566666665555543333 23345666666655443 3334455566666666655553332 245666
Q ss_pred CCCEecccC
Q 042822 399 KLRLLDLTN 407 (775)
Q Consensus 399 ~L~~L~l~~ 407 (775)
+|++||..+
T Consensus 141 ~l~~LDF~k 149 (233)
T KOG1644|consen 141 SLRTLDFQK 149 (233)
T ss_pred cceEeehhh
Confidence 666666654
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.01 E-value=0.00094 Score=61.41 Aligned_cols=101 Identities=24% Similarity=0.284 Sum_probs=57.6
Q ss_pred cccEEEecCCCCCCCCcccccccCccEEEcCCCCCCC-ccccc-cCCcccEEEecCCCCcccch--hhhccCCCCEeccc
Q 042822 331 ELKVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGD-ITIIG-ELKNLEILSLIGSDIVEFPE--ELGKLTKLRLLDLT 406 (775)
Q Consensus 331 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~-p~~i~-~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~ 406 (775)
+...+||++|.+..++ .+..+..|.+|.+.+|.|.. -+.+. .+.+|+.|.+.+|++.++-+ .+..+++|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 4556677777666543 25556667777777777666 22333 34567777777776664432 24556677777666
Q ss_pred CCccccccc---hHHhhccccccEEEcCCC
Q 042822 407 NCFHLKVIA---ANLIASFTRLEELYMSNC 433 (775)
Q Consensus 407 ~~~~l~~~p---~~~l~~L~~L~~L~l~~~ 433 (775)
+|. ..... ..++.++++|+.|+..+-
T Consensus 122 ~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 122 GNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 653 22211 113556677777776543
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.81 E-value=0.00018 Score=80.47 Aligned_cols=35 Identities=14% Similarity=0.335 Sum_probs=17.1
Q ss_pred eEEeccCCCCC-ccccchhhcCCCCccEEEEecccchH
Q 042822 629 TMKVENCDELS-NIFVLSTTKCLPSLQRIAVIKCNKMK 665 (775)
Q Consensus 629 ~L~l~~C~~L~-~l~~~~~~~~l~~L~~L~l~~C~~L~ 665 (775)
.+.+.+|+.++ ++.. .......++.|++..|...+
T Consensus 380 ~~~l~gc~~l~~~l~~--~~~~~~~l~~L~l~~~~~~t 415 (482)
T KOG1947|consen 380 ELSLRGCPNLTESLEL--RLCRSDSLRVLNLSDCRLVT 415 (482)
T ss_pred HHHhcCCcccchHHHH--HhccCCccceEecccCcccc
Confidence 34555666652 2211 22333336667776666544
No 66
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.42 E-value=0.012 Score=65.94 Aligned_cols=214 Identities=18% Similarity=0.192 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHhc-CCcEEEEEEcCCCchh--h-hhccccCCCCCCCcEEEEEeCChHHHhhc--C-CCceEEcC----C
Q 042822 17 HARASMLYAQLKK-SRKILVILDNVWTELH--L-KDVGIPFGDEHKGCKVLLTTRGRDLLSRM--G-SEADVRMD----I 85 (775)
Q Consensus 17 ~~~~~~l~~~l~~-~kr~LlVlDdv~~~~~--~-~~l~~~~~~~~~gs~iivTTR~~~v~~~~--~-~~~~~~l~----~ 85 (775)
...++.+...+.. .++..+||||-.-..+ . ..+..-+.....+-.+|||||+..-.... . .....++. .
T Consensus 114 ~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lr 193 (894)
T COG2909 114 ESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELR 193 (894)
T ss_pred HHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhc
Confidence 3455566665543 3788999999754421 1 22222233455678899999987221110 0 11223333 2
Q ss_pred CCHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHhCCCchhHHHHHHHHhcCCcHHHHHHHHHHhcCCCcCcchhhhhhHH
Q 042822 86 LNEEEAWRLFEVKLGNDGLIRRMKSTATQIVKQCGGLPIALEPIAKALRNKTESECWKNALHELRMPTENNFHRELGKAY 165 (775)
Q Consensus 86 L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~ 165 (775)
++.+|+-++|....+..-. +.-++.+.+...|-+-|+..++=.++.+++.+.--..+.. . ...+.+.
T Consensus 194 f~~eE~~~fl~~~~~l~Ld----~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG---~-~~~l~dY----- 260 (894)
T COG2909 194 FDTEEAAAFLNDRGSLPLD----AADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSG---A-ASHLSDY----- 260 (894)
T ss_pred CChHHHHHHHHHcCCCCCC----hHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccc---h-HHHHHHH-----
Confidence 7899999999877633222 3447889999999999999999888855544422222211 0 0011110
Q ss_pred HHHHhhHhccCchhHHHHHHhcCCCCCCCChhhHHHHHhhccccccccHHHHHHHHHHHHHHHHHccceec--ccccceE
Q 042822 166 TAIKLSYDALKGEQLKKIFQLCSLMPKSFFASDLFKYCIGLGIFRGINMEDARNTLYTLVHELKDSCLLLE--GYSCREF 243 (775)
Q Consensus 166 ~~l~~sy~~L~~~~lk~cf~~~~~fp~~~~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~L~~~sl~~~--~~~~~~~ 243 (775)
...--++.||++ +|.-++-||+++.-. .+|+...-+ ++.+..++++|.+++++.. .+...+|
T Consensus 261 -L~eeVld~Lp~~-l~~FLl~~svl~~f~--~eL~~~Ltg------------~~ng~amLe~L~~~gLFl~~Ldd~~~Wf 324 (894)
T COG2909 261 -LVEEVLDRLPPE-LRDFLLQTSVLSRFN--DELCNALTG------------EENGQAMLEELERRGLFLQRLDDEGQWF 324 (894)
T ss_pred -HHHHHHhcCCHH-HHHHHHHHHhHHHhh--HHHHHHHhc------------CCcHHHHHHHHHhCCCceeeecCCCcee
Confidence 223346889998 788888888875411 133222211 1223345889999998863 3567899
Q ss_pred EehHHHHHHHHHHHhc
Q 042822 244 SMHDVVHDVAILIACG 259 (775)
Q Consensus 244 ~mHdlv~~l~~~~~~~ 259 (775)
+.|.++.+|.+.-...
T Consensus 325 ryH~LFaeFL~~r~~~ 340 (894)
T COG2909 325 RYHHLFAEFLRQRLQR 340 (894)
T ss_pred ehhHHHHHHHHhhhcc
Confidence 9999999998765543
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=0.00021 Score=68.58 Aligned_cols=100 Identities=19% Similarity=0.174 Sum_probs=54.1
Q ss_pred CCcccEEEecCCCCCCCCcccccccCccEEEcCCCCCCCccccccCCcccEEEecCCCCcccch--hhhccCCCCEeccc
Q 042822 329 MRELKVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGDITIIGELKNLEILSLIGSDIVEFPE--ELGKLTKLRLLDLT 406 (775)
Q Consensus 329 l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~p~~i~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~ 406 (775)
+.+.+-|++-||.+..+. ...+++.|++|.|+-|.|+....+..|++|+.|+|+.|.|..+-+ .+.++++|+.|-+.
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 444555566666555431 234566666666666666666666666666666666665554432 24555666666655
Q ss_pred CCccccccchH----HhhccccccEEE
Q 042822 407 NCFHLKVIAAN----LIASFTRLEELY 429 (775)
Q Consensus 407 ~~~~l~~~p~~----~l~~L~~L~~L~ 429 (775)
.|...+.-+.. ++.-|++|+.|+
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 55444333321 244455555554
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.36 E-value=0.0027 Score=61.12 Aligned_cols=57 Identities=26% Similarity=0.391 Sum_probs=23.8
Q ss_pred CCcccEEEecCC--CCC-CCCcccccccCccEEEcCCCCCCCc---cccccCCcccEEEecCC
Q 042822 329 MRELKVVDLTNM--QLF-SLPSSIDLLLNLRTLCLDHGTLGDI---TIIGELKNLEILSLIGS 385 (775)
Q Consensus 329 l~~L~~L~l~~~--~~~-~lp~~i~~l~~L~~L~L~~~~l~~p---~~i~~l~~L~~L~l~~~ 385 (775)
+++|+.|.++.| .+. .++....++++|++|++++|.++.+ ..+.++.+|..|++..|
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccC
Confidence 444444444444 222 2333333335555555555544332 22233344444444444
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.35 E-value=0.00034 Score=67.28 Aligned_cols=98 Identities=21% Similarity=0.187 Sum_probs=65.9
Q ss_pred CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEEEcCCCCCCCc---cccccCCcc
Q 042822 301 ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGDI---TIIGELKNL 377 (775)
Q Consensus 301 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~p---~~i~~l~~L 377 (775)
.+.+.+.|+++||.+. .| ++..+|+.|.||.|+-|+|+.+. .+..+++|+.|.|+.|.|.+. .-+.++++|
T Consensus 17 dl~~vkKLNcwg~~L~---DI--sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLD---DI--SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHHhhhhcccCCCcc---HH--HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 3556777788887665 22 45677888888888888887763 367788888888888877663 445677778
Q ss_pred cEEEecCC--CCcccch----hhhccCCCCEec
Q 042822 378 EILSLIGS--DIVEFPE----ELGKLTKLRLLD 404 (775)
Q Consensus 378 ~~L~l~~~--~l~~lp~----~i~~l~~L~~L~ 404 (775)
+.|-|..| ....-+. .+.-|++|+.||
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88877765 2222221 245667777765
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.29 E-value=0.00079 Score=75.29 Aligned_cols=124 Identities=15% Similarity=0.187 Sum_probs=74.6
Q ss_pred ccccceEEeecccCCcccccccccccccccCcEEEeecC-CCccccccCCCcccCCcccccceeeccccccccccccccc
Q 042822 541 GIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNN-PDLLFIVDSREIVDCDAFPLLELLSLQNLINLKTICVDRL 619 (775)
Q Consensus 541 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~ 619 (775)
.++.|+.|.+.+|..+.+.........+++|+.|++.+| ...... ..........+++|+.|++..|..+.+......
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLS-PLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccc-hhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 367777777777766665332222345677778777763 222111 000111234457788888888776554421111
Q ss_pred CcccccCCCeEEeccCCCCCccccchhhcCCCCccEEEEecccchHH
Q 042822 620 STESFAELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKE 666 (775)
Q Consensus 620 ~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~~L~~ 666 (775)
...+++|++|.+.+|..+++-.-......+++|++|++++|..+.+
T Consensus 265 -~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d 310 (482)
T KOG1947|consen 265 -ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD 310 (482)
T ss_pred -HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH
Confidence 1237788888888888776655445667788888888888888743
No 71
>PF05729 NACHT: NACHT domain
Probab=96.25 E-value=0.011 Score=54.98 Aligned_cols=74 Identities=22% Similarity=0.305 Sum_probs=52.4
Q ss_pred HHhcCCcEEEEEEcCCCchh---------hhhccccCCC--CCCCcEEEEEeCChHH---HhhcCCCceEEcCCCCHHHH
Q 042822 26 QLKKSRKILVILDNVWTELH---------LKDVGIPFGD--EHKGCKVLLTTRGRDL---LSRMGSEADVRMDILNEEEA 91 (775)
Q Consensus 26 ~l~~~kr~LlVlDdv~~~~~---------~~~l~~~~~~--~~~gs~iivTTR~~~v---~~~~~~~~~~~l~~L~~~~~ 91 (775)
.+.+.++++||+|++++... +..+...+.. ...+.+||||||.... .........++++++++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 34457999999999987643 2222222222 2568999999999866 33345557899999999999
Q ss_pred HHHHHHHh
Q 042822 92 WRLFEVKL 99 (775)
Q Consensus 92 ~~Lf~~~a 99 (775)
.+++.+..
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99997754
No 72
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.15 E-value=0.0036 Score=60.25 Aligned_cols=88 Identities=22% Similarity=0.185 Sum_probs=65.3
Q ss_pred cccceeEEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCC--CcccccccCcc
Q 042822 279 ALKKCYAISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSL--PSSIDLLLNLR 356 (775)
Q Consensus 279 ~~~~~~~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l--p~~i~~l~~L~ 356 (775)
....+.++++.+..+..+.....+++|+.|.++.|+....+.++.-+ ..+++|++|++++|++..+ -..+..+.+|.
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccchhhhhcchh
Confidence 34556777777777766666678999999999999655444555443 5679999999999998742 12356788899
Q ss_pred EEEcCCCCCCC
Q 042822 357 TLCLDHGTLGD 367 (775)
Q Consensus 357 ~L~L~~~~l~~ 367 (775)
.|++.+|....
T Consensus 120 ~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 120 SLDLFNCSVTN 130 (260)
T ss_pred hhhcccCCccc
Confidence 99999987543
No 73
>PRK06893 DNA replication initiation factor; Validated
Probab=96.10 E-value=0.01 Score=58.52 Aligned_cols=99 Identities=18% Similarity=0.127 Sum_probs=63.7
Q ss_pred CcEEEEEEcCCCc---hhhhh-ccccCCCC-CCCcEEEEEeCC----------hHHHhhcCCCceEEcCCCCHHHHHHHH
Q 042822 31 RKILVILDNVWTE---LHLKD-VGIPFGDE-HKGCKVLLTTRG----------RDLLSRMGSEADVRMDILNEEEAWRLF 95 (775)
Q Consensus 31 kr~LlVlDdv~~~---~~~~~-l~~~~~~~-~~gs~iivTTR~----------~~v~~~~~~~~~~~l~~L~~~~~~~Lf 95 (775)
+.-+||+||+|.. .+|+. +...+... ..|..|||||.+ ++++..++....+++++++.++.++++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL 170 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVL 170 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHH
Confidence 3458999999974 45653 22222211 235566555443 366666677789999999999999999
Q ss_pred HHHhCCCCCcchhhHHHHHHHHHhCCCchhHHHHH
Q 042822 96 EVKLGNDGLIRRMKSTATQIVKQCGGLPIALEPIA 130 (775)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 130 (775)
++.+......- -.++..-|++++.|-.-++..+-
T Consensus 171 ~~~a~~~~l~l-~~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 171 QRNAYQRGIEL-SDEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHHHHcCCCC-CHHHHHHHHHhccCCHHHHHHHH
Confidence 99883222111 13567788888887766654443
No 74
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.91 E-value=0.007 Score=58.31 Aligned_cols=87 Identities=23% Similarity=0.321 Sum_probs=56.8
Q ss_pred cccccCccEEEcCCCCCCC--cc----ccccCCcccEEEecCC---CCc-ccchh-------hhccCCCCEecccCCccc
Q 042822 349 IDLLLNLRTLCLDHGTLGD--IT----IIGELKNLEILSLIGS---DIV-EFPEE-------LGKLTKLRLLDLTNCFHL 411 (775)
Q Consensus 349 i~~l~~L~~L~L~~~~l~~--p~----~i~~l~~L~~L~l~~~---~l~-~lp~~-------i~~l~~L~~L~l~~~~~l 411 (775)
+..+..+..++|++|.|.. .. .|.+-.+|+..+++.- ... ++|+. +-++++|+..++++|..-
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 4456778889999998765 22 3555678888887763 222 45543 346778888888887655
Q ss_pred cccchH---HhhccccccEEEcCCCcc
Q 042822 412 KVIAAN---LIASFTRLEELYMSNCFV 435 (775)
Q Consensus 412 ~~~p~~---~l~~L~~L~~L~l~~~~~ 435 (775)
...|+. .+++-+.|.+|.+.+|.+
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCC
Confidence 555543 245567788888877754
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.80 E-value=0.0037 Score=35.65 Aligned_cols=21 Identities=33% Similarity=0.672 Sum_probs=13.0
Q ss_pred cccEEEecCCCCcccchhhhc
Q 042822 376 NLEILSLIGSDIVEFPEELGK 396 (775)
Q Consensus 376 ~L~~L~l~~~~l~~lp~~i~~ 396 (775)
+|++|++++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466666666666666665543
No 76
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=95.56 E-value=0.049 Score=53.93 Aligned_cols=111 Identities=17% Similarity=0.249 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhc-CCcEEEEEEcCCCch-hh-------hhccc---cCCCCCCCcEEEEEeCChHHHhh--------cC
Q 042822 17 HARASMLYAQLKK-SRKILVILDNVWTEL-HL-------KDVGI---PFGDEHKGCKVLLTTRGRDLLSR--------MG 76 (775)
Q Consensus 17 ~~~~~~l~~~l~~-~kr~LlVlDdv~~~~-~~-------~~l~~---~~~~~~~gs~iivTTR~~~v~~~--------~~ 76 (775)
......+.+.+.+ +++.+||+||+.... .. ..+.. ......+.+ +|+++-...+... .+
T Consensus 103 ~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~v~~~S~~~~~~~~~~~~~~~~~ 181 (234)
T PF01637_consen 103 FSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVS-IVITGSSDSLMEEFLDDKSPLFG 181 (234)
T ss_dssp G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEE-EEEEESSHHHHHHTT-TTSTTTT
T ss_pred HHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCce-EEEECCchHHHHHhhcccCcccc
Confidence 3445555566654 356999999997765 11 11111 212233344 4455544444432 23
Q ss_pred CCceEEcCCCCHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHhCCCchhHHH
Q 042822 77 SEADVRMDILNEEEAWRLFEVKLGNDGLIRRMKSTATQIVKQCGGLPIALEP 128 (775)
Q Consensus 77 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~ 128 (775)
....+.+++++.+++++++...+.....-+.-.+..++|.+.+||.|..|.-
T Consensus 182 ~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 182 RFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp ---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred ccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 3346999999999999999998733211111244569999999999987753
No 77
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.28 E-value=0.0055 Score=34.97 Aligned_cols=21 Identities=38% Similarity=0.528 Sum_probs=12.7
Q ss_pred cccEEEecCCCCCCCCccccc
Q 042822 331 ELKVVDLTNMQLFSLPSSIDL 351 (775)
Q Consensus 331 ~L~~L~l~~~~~~~lp~~i~~ 351 (775)
+|++||+++|.++.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666655543
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.02 E-value=0.0028 Score=58.45 Aligned_cols=70 Identities=17% Similarity=0.282 Sum_probs=50.1
Q ss_pred CCcccccceeecccccccccccccccCcccccCCCeEEeccCCCCCccccchhhcCCCCccEEEEecccchH
Q 042822 594 CDAFPLLELLSLQNLINLKTICVDRLSTESFAELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMK 665 (775)
Q Consensus 594 ~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~~L~ 665 (775)
...+++++.|.+.+|..+..|+-+-.. +-+|+|+.|+|++|+++++-.- ..+..+++|+.|.+.+.+...
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~-~~~~~L~~L~lsgC~rIT~~GL-~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLG-GLAPSLQDLDLSGCPRITDGGL-ACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhc-ccccchheeeccCCCeechhHH-HHHHHhhhhHHHHhcCchhhh
Confidence 345677778888888888877654443 2678899999999988887532 356677888888877766544
No 79
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.63 E-value=0.097 Score=46.20 Aligned_cols=115 Identities=18% Similarity=0.332 Sum_probs=40.0
Q ss_pred CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCc-ccccccCccEEEcCCCCCCC--ccccccCCcc
Q 042822 301 ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPS-SIDLLLNLRTLCLDHGTLGD--ITIIGELKNL 377 (775)
Q Consensus 301 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~l~~--p~~i~~l~~L 377 (775)
++++|+.+.+... .. .+....|..+..|+.+.+.++ +..++. .+.++.+|+.+.+.. .+.. ...+..+.+|
T Consensus 10 ~~~~l~~i~~~~~-~~---~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 10 NCSNLESITFPNT-IK---KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp T-TT--EEEETST------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred CCCCCCEEEECCC-ee---EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 4455555555431 22 444555556656666666553 444332 244444555555543 2222 2234445555
Q ss_pred cEEEecCCCCcccch-hhhccCCCCEecccCCccccccchHHhhccccc
Q 042822 378 EILSLIGSDIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAANLIASFTRL 425 (775)
Q Consensus 378 ~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L 425 (775)
+.+++..+ +..++. .+.+. +|+.+.+.. .+..++...+.+.++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 55555433 333332 23333 555554443 2334444444444433
No 80
>COG3903 Predicted ATPase [General function prediction only]
Probab=94.03 E-value=0.074 Score=55.10 Aligned_cols=228 Identities=18% Similarity=0.181 Sum_probs=137.8
Q ss_pred HHHHHHHHhcCCcEEEEEEcCCCch-hhhhccccCCCCCCCcEEEEEeCChHHHhhcCCCceEEcCCCCHH-HHHHHHHH
Q 042822 20 ASMLYAQLKKSRKILVILDNVWTEL-HLKDVGIPFGDEHKGCKVLLTTRGRDLLSRMGSEADVRMDILNEE-EAWRLFEV 97 (775)
Q Consensus 20 ~~~l~~~l~~~kr~LlVlDdv~~~~-~~~~l~~~~~~~~~gs~iivTTR~~~v~~~~~~~~~~~l~~L~~~-~~~~Lf~~ 97 (775)
...+..++. ++|.++|+||-.+.. +-..+..++..+...-+|+.|+|.. -.+.....+.+++|+.- ++.++|..
T Consensus 78 ~~~~~~~~~-~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~---~l~~ge~~~~~~~L~~~d~a~~lf~~ 153 (414)
T COG3903 78 VDTLVRRIG-DRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREA---ILVAGEVHRRVPSLSLFDEAIELFVC 153 (414)
T ss_pred HHHHHHHHh-hhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhh---hcccccccccCCccccCCchhHHHHH
Confidence 335555665 699999999987653 2222223344455566788899865 23344567888888865 79999988
Q ss_pred HhC----CCCCcchhhHHHHHHHHHhCCCchhHHHHHHHHhcCCcHHHHHHHHHHhcCCC--cCcchhhhhhHHHHHHhh
Q 042822 98 KLG----NDGLIRRMKSTATQIVKQCGGLPIALEPIAKALRNKTESECWKNALHELRMPT--ENNFHRELGKAYTAIKLS 171 (775)
Q Consensus 98 ~a~----~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~~w~~~l~~l~~~~--~~~~~~~~~~~~~~l~~s 171 (775)
.|. .-.....-...+.+|.++.+|.|+||...++..++-...+.-.-.-+.+.... ........+...+.+..|
T Consensus 154 ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws 233 (414)
T COG3903 154 RAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWS 233 (414)
T ss_pred HHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhh
Confidence 872 22233344677899999999999999999999988755442222222221111 111222234677899999
Q ss_pred HhccCchhHHHHHHhcCCCCCCCChhhHHHHHhhccccccccHHHHHHHHHHHHHHHHHccceeccc--ccceEEehHHH
Q 042822 172 YDALKGEQLKKIFQLCSLMPKSFFASDLFKYCIGLGIFRGINMEDARNTLYTLVHELKDSCLLLEGY--SCREFSMHDVV 249 (775)
Q Consensus 172 y~~L~~~~lk~cf~~~~~fp~~~~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~L~~~sl~~~~~--~~~~~~mHdlv 249 (775)
|.-|...+ +.-|--++.|...+... ...|.+.|-.- .........-+-.+++.+++.... ....|+.-+-+
T Consensus 234 ~~lLtgwe-~~~~~rLa~~~g~f~~~--l~~~~a~g~~~----~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~ 306 (414)
T COG3903 234 YALLTGWE-RALFGRLAVFVGGFDLG--LALAVAAGADV----DVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETG 306 (414)
T ss_pred hHhhhhHH-HHHhcchhhhhhhhccc--HHHHHhcCCcc----ccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHH
Confidence 99999875 78888888887766544 23344433211 011111222345577788775332 22335555566
Q ss_pred HHHHHHHHh
Q 042822 250 HDVAILIAC 258 (775)
Q Consensus 250 ~~l~~~~~~ 258 (775)
+.++..+..
T Consensus 307 r~YalaeL~ 315 (414)
T COG3903 307 RRYALAELH 315 (414)
T ss_pred HHHHHHHHH
Confidence 666655443
No 81
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.00 E-value=0.15 Score=44.88 Aligned_cols=107 Identities=14% Similarity=0.288 Sum_probs=63.6
Q ss_pred ccChhhhhCCCcccEEEecCCCCCCCC-cccccccCccEEEcCCCCCCC--ccccccCCcccEEEecCCCCcccch-hhh
Q 042822 320 NIPRSFFTGMRELKVVDLTNMQLFSLP-SSIDLLLNLRTLCLDHGTLGD--ITIIGELKNLEILSLIGSDIVEFPE-ELG 395 (775)
Q Consensus 320 ~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~l~~--p~~i~~l~~L~~L~l~~~~l~~lp~-~i~ 395 (775)
.++...|.++.+|+.+.+.. .+..++ ..+.++.+|+.+.+.++ +.. -..+..+.+|+.+.+.. .+..++. .+.
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~ 78 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFS 78 (129)
T ss_dssp EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred EECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccc
Confidence 35666788999999999885 566664 44677878999999875 555 24477787899999865 5555554 356
Q ss_pred ccCCCCEecccCCccccccchHHhhccccccEEEcCC
Q 042822 396 KLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSN 432 (775)
Q Consensus 396 ~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~ 432 (775)
.+.+|+.+.+..+ +..++...+.+. +|+.+.+..
T Consensus 79 ~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 79 NCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp T-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 6888888888653 667777767776 888887754
No 82
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.94 E-value=2.1 Score=46.27 Aligned_cols=214 Identities=13% Similarity=0.152 Sum_probs=108.9
Q ss_pred hHHHHhCC-CC--ccccHHHHHHHHHHHHhc-CCcEEEEEEcCCCch------hhhhccccCCCCCCCcE--EEEEeCCh
Q 042822 2 EIAEQIGL-TL--DKETEHARASMLYAQLKK-SRKILVILDNVWTEL------HLKDVGIPFGDEHKGCK--VLLTTRGR 69 (775)
Q Consensus 2 ~i~~~l~~-~~--~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~------~~~~l~~~~~~~~~gs~--iivTTR~~ 69 (775)
+|+++++. .. ...+.++....+.+.+.+ +++.+||+|+++... .+..+...+. ...+++ ||.++...
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~-~~~~~~v~vI~i~~~~ 183 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHE-EYPGARIGVIGISSDL 183 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhh-ccCCCeEEEEEEECCc
Confidence 45666654 11 223456677778888764 356899999998743 2333322222 122333 67776665
Q ss_pred HHHhhcC-------CCceEEcCCCCHHHHHHHHHHHhC----CCCCcch-hhHHHHHHHHHhCCCchhHHHHHHHH--h-
Q 042822 70 DLLSRMG-------SEADVRMDILNEEEAWRLFEVKLG----NDGLIRR-MKSTATQIVKQCGGLPIALEPIAKAL--R- 134 (775)
Q Consensus 70 ~v~~~~~-------~~~~~~l~~L~~~~~~~Lf~~~a~----~~~~~~~-~~~~~~~i~~~c~glPLai~~~g~~L--~- 134 (775)
.+..... ....+.+++.+.++..+.+..++. .....++ ++.+++......|..+.|+.++-.+. +
T Consensus 184 ~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 184 TFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred chhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 4433211 124678999999999999998872 1122222 23333333333466777776654322 1
Q ss_pred -c-C--CcHHHHHHHHHHhcCCCcCcchhhhhhHHHHHHhhHhccCchhHHHHHHhc-C-CCC---CCCChhhHHHH--H
Q 042822 135 -N-K--TESECWKNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLC-S-LMP---KSFFASDLFKY--C 203 (775)
Q Consensus 135 -~-~--~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cf~~~-~-~fp---~~~~~~~li~~--w 203 (775)
. . -+.+.++++.+... .....-.+..||.+ ++.|++. + ... ......++... .
T Consensus 264 ~~~~~~I~~~~v~~a~~~~~--------------~~~~~~~~~~L~~~--~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~ 327 (394)
T PRK00411 264 REGSRKVTEEDVRKAYEKSE--------------IVHLSEVLRTLPLH--EKLLLRAIVRLLKKGGDEVTTGEVYEEYKE 327 (394)
T ss_pred HcCCCCcCHHHHHHHHHHHH--------------HHHHHHHHhcCCHH--HHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 1 1 12233444444320 11334567899987 4555442 2 111 11222222211 1
Q ss_pred hhccccccccHHH-HHHHHHHHHHHHHHccceec
Q 042822 204 IGLGIFRGINMED-ARNTLYTLVHELKDSCLLLE 236 (775)
Q Consensus 204 ~a~g~i~~~~~~~-~~~~~~~~~~~L~~~sl~~~ 236 (775)
+++.+ .... ....+.++++.|...+++..
T Consensus 328 l~~~~----~~~~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 328 LCEEL----GYEPRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred HHHHc----CCCcCcHHHHHHHHHHHHhcCCeEE
Confidence 11111 0111 23445667888888888864
No 83
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.75 E-value=0.043 Score=28.95 Aligned_cols=16 Identities=31% Similarity=0.582 Sum_probs=6.9
Q ss_pred cccEEEecCCCCcccc
Q 042822 376 NLEILSLIGSDIVEFP 391 (775)
Q Consensus 376 ~L~~L~l~~~~l~~lp 391 (775)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555666666555554
No 84
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=93.66 E-value=1.1 Score=46.87 Aligned_cols=122 Identities=15% Similarity=0.084 Sum_probs=68.7
Q ss_pred CcEEEEEeCChHHHhhc--CCCceEEcCCCCHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHhCCCchhHHHHHHHHhcC
Q 042822 59 GCKVLLTTRGRDLLSRM--GSEADVRMDILNEEEAWRLFEVKLGNDGLIRRMKSTATQIVKQCGGLPIALEPIAKALRNK 136 (775)
Q Consensus 59 gs~iivTTR~~~v~~~~--~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~ 136 (775)
.+-|.+|||...+.... .....+++++++.++..+++.+.++.....- -.+....|++.|+|.|-.+..+...+.
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~-~~~~~~~ia~~~~G~pR~a~~~l~~~~-- 227 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEI-DEEGALEIARRSRGTPRIANRLLRRVR-- 227 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHcCCCchHHHHHHHHHH--
Confidence 45566777755443321 1135689999999999999999884322111 135688999999999965444433221
Q ss_pred CcHHHHHHHHHHhcCCCcCcchhhhhhHHHHHHhhHhccCchhHHHHHH-hcCCCCCC
Q 042822 137 TESECWKNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQ-LCSLMPKS 193 (775)
Q Consensus 137 ~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cf~-~~~~fp~~ 193 (775)
.|..+. ...... ..........+...|..|++.+ +..+. ....|+.+
T Consensus 228 ----~~a~~~---~~~~I~--~~~v~~~l~~~~~~~~~l~~~~-~~~l~~~~~~~~~~ 275 (328)
T PRK00080 228 ----DFAQVK---GDGVIT--KEIADKALDMLGVDELGLDEMD-RKYLRTIIEKFGGG 275 (328)
T ss_pred ----HHHHHc---CCCCCC--HHHHHHHHHHhCCCcCCCCHHH-HHHHHHHHHHcCCC
Confidence 121111 001100 1111134455667777887764 55554 55566554
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.65 E-value=0.0099 Score=54.96 Aligned_cols=71 Identities=17% Similarity=0.344 Sum_probs=54.5
Q ss_pred ccccCCCeEEeccCCCCCccccchhhcCCCCccEEEEecccchHHHhhccCCCCcccCCCCCCccccccccCeEecCCCC
Q 042822 622 ESFAELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVADNSNANEKIEFAQIRYLSLGNLP 701 (775)
Q Consensus 622 ~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 701 (775)
..+++++.|.+.+|..+.+..-....+-.|+|+.|+|++|+.+++-- -.-+..+++|+.|.|.++|
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G--------------L~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG--------------LACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH--------------HHHHHHhhhhHHHHhcCch
Confidence 45688999999999999877544344567899999999999988651 2334568999999999887
Q ss_pred Ccccc
Q 042822 702 ELKSF 706 (775)
Q Consensus 702 ~L~~l 706 (775)
.....
T Consensus 188 ~v~~~ 192 (221)
T KOG3864|consen 188 YVANL 192 (221)
T ss_pred hhhch
Confidence 66544
No 86
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=92.94 E-value=7.8 Score=40.10 Aligned_cols=72 Identities=19% Similarity=0.123 Sum_probs=48.2
Q ss_pred CcEEEEEeCChHHHhhc--CCCceEEcCCCCHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHhCCCchhHHHHHH
Q 042822 59 GCKVLLTTRGRDLLSRM--GSEADVRMDILNEEEAWRLFEVKLGNDGLIRRMKSTATQIVKQCGGLPIALEPIAK 131 (775)
Q Consensus 59 gs~iivTTR~~~v~~~~--~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~ 131 (775)
.+-|.+|||...+.... .....+++++++.++..+++.+.++.....- -.+....|++.|+|.|-.+..++.
T Consensus 130 ~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~-~~~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEI-EPEAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred eEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCc-CHHHHHHHHHHhCCCcchHHHHHH
Confidence 55566777765443321 1135689999999999999999884322111 135678899999999976654444
No 87
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.80 E-value=0.069 Score=28.14 Aligned_cols=16 Identities=50% Similarity=0.798 Sum_probs=6.6
Q ss_pred cccEEEecCCCCCCCC
Q 042822 331 ELKVVDLTNMQLFSLP 346 (775)
Q Consensus 331 ~L~~L~l~~~~~~~lp 346 (775)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555443
No 88
>PF13173 AAA_14: AAA domain
Probab=92.12 E-value=0.2 Score=44.27 Aligned_cols=62 Identities=21% Similarity=0.220 Sum_probs=47.0
Q ss_pred CCcEEEEEEcCCCchhhhhccccCCCCCCCcEEEEEeCChHHHhh------cCCCceEEcCCCCHHHH
Q 042822 30 SRKILVILDNVWTELHLKDVGIPFGDEHKGCKVLLTTRGRDLLSR------MGSEADVRMDILNEEEA 91 (775)
Q Consensus 30 ~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTTR~~~v~~~------~~~~~~~~l~~L~~~~~ 91 (775)
.++.+|++|+|....+|......+.+..+..+|++|+........ .|....++|.||+..|-
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 367889999999999998766666665667899999998766533 22334789999998773
No 89
>COG3899 Predicted ATPase [General function prediction only]
Probab=92.10 E-value=2.3 Score=50.52 Aligned_cols=172 Identities=14% Similarity=0.242 Sum_probs=103.9
Q ss_pred HHHHHHhcCCcEEEEEEcCC-Cch-hhhhccccCCCCC----CCcEE--EEEeCCh-HHHhh-cCCCceEEcCCCCHHHH
Q 042822 22 MLYAQLKKSRKILVILDNVW-TEL-HLKDVGIPFGDEH----KGCKV--LLTTRGR-DLLSR-MGSEADVRMDILNEEEA 91 (775)
Q Consensus 22 ~l~~~l~~~kr~LlVlDdv~-~~~-~~~~l~~~~~~~~----~gs~i--ivTTR~~-~v~~~-~~~~~~~~l~~L~~~~~ 91 (775)
.+.....+.|+..+|+||+. -+. ..+-|........ .-..| +.|.+.. ..... -.....+.+.||+..+.
T Consensus 145 ~i~~~~~~~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~ 224 (849)
T COG3899 145 FIQVFTAEEHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADT 224 (849)
T ss_pred HHHHHHhccCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhH
Confidence 34444455679999999994 332 1221111111000 01123 3333332 11222 23456899999999999
Q ss_pred HHHHHHHhCCCCCcchhhHHHHHHHHHhCCCchhHHHHHHHHhcC------CcHHHHHHHHHHhcCCCcCcchhhhhhHH
Q 042822 92 WRLFEVKLGNDGLIRRMKSTATQIVKQCGGLPIALEPIAKALRNK------TESECWKNALHELRMPTENNFHRELGKAY 165 (775)
Q Consensus 92 ~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~------~~~~~w~~~l~~l~~~~~~~~~~~~~~~~ 165 (775)
-.+.....+..... ..+..+.|++|-+|.|+-+.-+-..+... .+...|+.=...+... ...+.+.
T Consensus 225 ~~lV~~~l~~~~~~--~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~------~~~~~vv 296 (849)
T COG3899 225 NQLVAATLGCTKLL--PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGIL------ATTDAVV 296 (849)
T ss_pred HHHHHHHhCCcccc--cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCc------hhhHHHH
Confidence 99998888653211 23568899999999999998887777664 2333354433332221 1222456
Q ss_pred HHHHhhHhccCchhHHHHHHhcCCCCCCCChhhHHHH
Q 042822 166 TAIKLSYDALKGEQLKKIFQLCSLMPKSFFASDLFKY 202 (775)
Q Consensus 166 ~~l~~sy~~L~~~~lk~cf~~~~~fp~~~~~~~li~~ 202 (775)
..+..-.+.||.. -++....-|++-..+..+.|...
T Consensus 297 ~~l~~rl~kL~~~-t~~Vl~~AA~iG~~F~l~~La~l 332 (849)
T COG3899 297 EFLAARLQKLPGT-TREVLKAAACIGNRFDLDTLAAL 332 (849)
T ss_pred HHHHHHHhcCCHH-HHHHHHHHHHhCccCCHHHHHHH
Confidence 6788899999998 59999998888777766544333
No 90
>PF14516 AAA_35: AAA-like domain
Probab=91.57 E-value=3.1 Score=43.57 Aligned_cols=54 Identities=15% Similarity=0.123 Sum_probs=43.4
Q ss_pred CceEEcCCCCHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHhCCCchhHHHHHHHHhcC
Q 042822 78 EADVRMDILNEEEAWRLFEVKLGNDGLIRRMKSTATQIVKQCGGLPIALEPIAKALRNK 136 (775)
Q Consensus 78 ~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~ 136 (775)
...+++++++.+|...|...+..... ....++|....||+|--+..++..+...
T Consensus 193 g~~i~L~~Ft~~ev~~L~~~~~~~~~-----~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 193 GQPIELPDFTPEEVQELAQRYGLEFS-----QEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred ccceeCCCCCHHHHHHHHHhhhccCC-----HHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 35789999999999999887742211 1228899999999999999999999775
No 91
>PRK13342 recombination factor protein RarA; Reviewed
Probab=90.86 E-value=5.1 Score=43.49 Aligned_cols=101 Identities=14% Similarity=0.184 Sum_probs=62.6
Q ss_pred cCCcEEEEEEcCCCch--hhhhccccCCCCCCCcEEEE--EeCChH--HHh-hcCCCceEEcCCCCHHHHHHHHHHHhCC
Q 042822 29 KSRKILVILDNVWTEL--HLKDVGIPFGDEHKGCKVLL--TTRGRD--LLS-RMGSEADVRMDILNEEEAWRLFEVKLGN 101 (775)
Q Consensus 29 ~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iiv--TTR~~~--v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~ 101 (775)
.+++.+|++|+|+... +.+.+...+. .|..++| ||.+.. +.. ...-...+.+++++.++.++++.+.+..
T Consensus 90 ~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 90 AGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHH
Confidence 4688999999999763 3444443332 2444444 344432 111 1222368999999999999999987622
Q ss_pred --CCCcchhhHHHHHHHHHhCCCchhHHHHHHH
Q 042822 102 --DGLIRRMKSTATQIVKQCGGLPIALEPIAKA 132 (775)
Q Consensus 102 --~~~~~~~~~~~~~i~~~c~glPLai~~~g~~ 132 (775)
.....--.+..+.|++.|+|-|..+..+...
T Consensus 167 ~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 167 KERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred hhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 1110112456788999999999876554443
No 92
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.42 E-value=0.012 Score=55.41 Aligned_cols=81 Identities=14% Similarity=0.129 Sum_probs=39.9
Q ss_pred CCCcccEEEecCCCCCCCCcccccccCccEEEcCCCCCCC-ccccccCCcccEEEecCCCCcccchhhhccCCCCEeccc
Q 042822 328 GMRELKVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGD-ITIIGELKNLEILSLIGSDIVEFPEELGKLTKLRLLDLT 406 (775)
Q Consensus 328 ~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~-p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 406 (775)
.++..++||++.|.+..+-..+..++.|..|+++.+.+.. |.+++.+..++++++..|+.+..|.+.++++.+++++..
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhc
Confidence 3444445555555444444444444445555555444444 444555555555555444555555555555555555544
Q ss_pred CC
Q 042822 407 NC 408 (775)
Q Consensus 407 ~~ 408 (775)
++
T Consensus 120 ~~ 121 (326)
T KOG0473|consen 120 KT 121 (326)
T ss_pred cC
Confidence 43
No 93
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.26 E-value=0.011 Score=55.77 Aligned_cols=91 Identities=12% Similarity=0.010 Sum_probs=76.3
Q ss_pred CCC-cccccccCccEEEcCCCCCCC-ccccccCCcccEEEecCCCCcccchhhhccCCCCEecccCCccccccchHHhhc
Q 042822 344 SLP-SSIDLLLNLRTLCLDHGTLGD-ITIIGELKNLEILSLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIAS 421 (775)
Q Consensus 344 ~lp-~~i~~l~~L~~L~L~~~~l~~-p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~ 421 (775)
++| ..|.....-.+||++.+.+.. -..++.++.|..|+++.+.+..+|..++.+..++++++..| .....|.+ +++
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s-~~k 109 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKS-QKK 109 (326)
T ss_pred ccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCcc-ccc
Confidence 444 345667788899999998766 46678889999999999999999999999999999998876 67889998 999
Q ss_pred cccccEEEcCCCccc
Q 042822 422 FTRLEELYMSNCFVE 436 (775)
Q Consensus 422 L~~L~~L~l~~~~~~ 436 (775)
++++++++..++.+.
T Consensus 110 ~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 110 EPHPKKNEQKKTEFF 124 (326)
T ss_pred cCCcchhhhccCcch
Confidence 999999998877544
No 94
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=90.20 E-value=0.68 Score=45.56 Aligned_cols=97 Identities=18% Similarity=0.182 Sum_probs=58.9
Q ss_pred EEEEEEcCCCch---hhh-hccccCCC-CCCCcEEEEEeCChH---------HHhhcCCCceEEcCCCCHHHHHHHHHHH
Q 042822 33 ILVILDNVWTEL---HLK-DVGIPFGD-EHKGCKVLLTTRGRD---------LLSRMGSEADVRMDILNEEEAWRLFEVK 98 (775)
Q Consensus 33 ~LlVlDdv~~~~---~~~-~l~~~~~~-~~~gs~iivTTR~~~---------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 98 (775)
-+||+||++... .|. .+...+.. ...+.+||+||+... +...+.....+++++++.++-..++...
T Consensus 92 ~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~ 171 (226)
T TIGR03420 92 DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSR 171 (226)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHH
Confidence 489999998654 343 23322221 123347888887532 2222333467999999999999999876
Q ss_pred hCCCCCcchhhHHHHHHHHHhCCCchhHHHHH
Q 042822 99 LGNDGLIRRMKSTATQIVKQCGGLPIALEPIA 130 (775)
Q Consensus 99 a~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 130 (775)
+...... --.+..+.+++.+.|.|..+.-+.
T Consensus 172 ~~~~~~~-~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 172 AARRGLQ-LPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred HHHcCCC-CCHHHHHHHHHhccCCHHHHHHHH
Confidence 5211111 113456777788888887776543
No 95
>PRK09087 hypothetical protein; Validated
Probab=89.79 E-value=1.1 Score=43.82 Aligned_cols=95 Identities=14% Similarity=0.078 Sum_probs=58.9
Q ss_pred EEEEEEcCCCchhh-hhccccCCC-CCCCcEEEEEeCC---------hHHHhhcCCCceEEcCCCCHHHHHHHHHHHhCC
Q 042822 33 ILVILDNVWTELHL-KDVGIPFGD-EHKGCKVLLTTRG---------RDLLSRMGSEADVRMDILNEEEAWRLFEVKLGN 101 (775)
Q Consensus 33 ~LlVlDdv~~~~~~-~~l~~~~~~-~~~gs~iivTTR~---------~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~ 101 (775)
-+|++||+...... +.+...+.. ...|..||+|++. .+....+.....+++++++.++-.+++.+++..
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~ 168 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFAD 168 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHH
Confidence 37888999643210 112111110 1235678888873 334444566789999999999999999999832
Q ss_pred CCCcchhhHHHHHHHHHhCCCchhHHH
Q 042822 102 DGLIRRMKSTATQIVKQCGGLPIALEP 128 (775)
Q Consensus 102 ~~~~~~~~~~~~~i~~~c~glPLai~~ 128 (775)
.... --+++..-|++++.|-.-++..
T Consensus 169 ~~~~-l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 169 RQLY-VDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred cCCC-CCHHHHHHHHHHhhhhHHHHHH
Confidence 2111 1145677788888777666654
No 96
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=89.74 E-value=1.3 Score=46.74 Aligned_cols=105 Identities=11% Similarity=0.026 Sum_probs=67.3
Q ss_pred HHHHHHHHh----cCCcEEEEEEcCCCch--hhhhccccCCCCCCCcEEEEEeCCh-HHHhh-cCCCceEEcCCCCHHHH
Q 042822 20 ASMLYAQLK----KSRKILVILDNVWTEL--HLKDVGIPFGDEHKGCKVLLTTRGR-DLLSR-MGSEADVRMDILNEEEA 91 (775)
Q Consensus 20 ~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~-~v~~~-~~~~~~~~l~~L~~~~~ 91 (775)
+..+.+.+. ++++-++|+||+.... ..+.+...+.....++.+|++|... .+... ..-...+.+.+++.++.
T Consensus 126 iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i 205 (365)
T PRK07471 126 VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDV 205 (365)
T ss_pred HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHH
Confidence 444444443 2566789999998653 3555555554444566677777665 33333 23356899999999999
Q ss_pred HHHHHHHhCCCCCcchhhHHHHHHHHHhCCCchhHHHH
Q 042822 92 WRLFEVKLGNDGLIRRMKSTATQIVKQCGGLPIALEPI 129 (775)
Q Consensus 92 ~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 129 (775)
.+.+....+... .+....+++.++|.|.....+
T Consensus 206 ~~~L~~~~~~~~-----~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 206 IDALAAAGPDLP-----DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred HHHHHHhcccCC-----HHHHHHHHHHcCCCHHHHHHH
Confidence 999987643211 122267899999999866543
No 97
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.02 E-value=0.35 Score=28.73 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=11.9
Q ss_pred CcccEEEecCCCCcccchh
Q 042822 375 KNLEILSLIGSDIVEFPEE 393 (775)
Q Consensus 375 ~~L~~L~l~~~~l~~lp~~ 393 (775)
.+|++|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666654
No 98
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.02 E-value=0.35 Score=28.73 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=11.9
Q ss_pred CcccEEEecCCCCcccchh
Q 042822 375 KNLEILSLIGSDIVEFPEE 393 (775)
Q Consensus 375 ~~L~~L~l~~~~l~~lp~~ 393 (775)
.+|++|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666654
No 99
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=87.95 E-value=2 Score=40.86 Aligned_cols=89 Identities=18% Similarity=0.205 Sum_probs=60.2
Q ss_pred CCcEEEEEEcCCCch--hhhhccccCCCCCCCcEEEEEeCCh-HHHhhc-CCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTEL--HLKDVGIPFGDEHKGCKVLLTTRGR-DLLSRM-GSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
+.+-++|+||+.... .++.+...+......+.+|++|++. .+...+ .....+++.+++.++..+.+.+. + ..
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~-g---i~ 170 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ-G---IS 170 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc-C---CC
Confidence 466688999997653 4555655555545566777777653 332222 23458999999999988877776 2 11
Q ss_pred chhhHHHHHHHHHhCCCchh
Q 042822 106 RRMKSTATQIVKQCGGLPIA 125 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glPLa 125 (775)
.+.+..|++.++|.|..
T Consensus 171 ---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 171 ---EEAAELLLALAGGSPGA 187 (188)
T ss_pred ---HHHHHHHHHHcCCCccc
Confidence 35688999999998864
No 100
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=86.46 E-value=49 Score=35.19 Aligned_cols=125 Identities=14% Similarity=0.167 Sum_probs=69.9
Q ss_pred hHHHHh---CCCC--ccccHHHHHHHHHHHHhc-CCcEEEEEEcCCCch-h----hhhccccC-CCCC--CCcEEEEEeC
Q 042822 2 EIAEQI---GLTL--DKETEHARASMLYAQLKK-SRKILVILDNVWTEL-H----LKDVGIPF-GDEH--KGCKVLLTTR 67 (775)
Q Consensus 2 ~i~~~l---~~~~--~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~-~----~~~l~~~~-~~~~--~gs~iivTTR 67 (775)
+|++++ |... ...+..+....+.+.+.+ +++++||||+++... . ...+.... .... ..-.+|++|.
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEEC
Confidence 456666 4322 222445566677777753 568899999998772 1 22222110 1111 2234556665
Q ss_pred ChHHHhhc----C---CCceEEcCCCCHHHHHHHHHHHhC---C-CCCcchhhHHHHHHHHHhCCCchhH
Q 042822 68 GRDLLSRM----G---SEADVRMDILNEEEAWRLFEVKLG---N-DGLIRRMKSTATQIVKQCGGLPIAL 126 (775)
Q Consensus 68 ~~~v~~~~----~---~~~~~~l~~L~~~~~~~Lf~~~a~---~-~~~~~~~~~~~~~i~~~c~glPLai 126 (775)
.......+ . ....+.+++.+.++-.+.+..++. . ....++..+...+++....|-|-.+
T Consensus 174 ~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~a 243 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKA 243 (365)
T ss_pred CcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHH
Confidence 44322211 1 124688999999999999998872 1 2233343445566677777887443
No 101
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=86.41 E-value=3.1 Score=43.27 Aligned_cols=92 Identities=16% Similarity=0.184 Sum_probs=61.6
Q ss_pred CcEEEEEEcCC--CchhhhhccccCCCCCCCcEEEEEeCChHHH-hh-cCCCceEEcCCCCHHHHHHHHHHHhCCCCCcc
Q 042822 31 RKILVILDNVW--TELHLKDVGIPFGDEHKGCKVLLTTRGRDLL-SR-MGSEADVRMDILNEEEAWRLFEVKLGNDGLIR 106 (775)
Q Consensus 31 kr~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~iivTTR~~~v~-~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~ 106 (775)
++=++|+|+++ +.+.|+.+...+.....++.+|++|.+.+.. +. ..-...+.+.+++.++....+....... .
T Consensus 93 ~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~~--~- 169 (313)
T PRK05564 93 DKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYNDI--K- 169 (313)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhcCC--C-
Confidence 44455556554 4566888887887777889999888765322 21 2224689999999999987776554311 1
Q ss_pred hhhHHHHHHHHHhCCCchhHH
Q 042822 107 RMKSTATQIVKQCGGLPIALE 127 (775)
Q Consensus 107 ~~~~~~~~i~~~c~glPLai~ 127 (775)
.+.++.++..++|.|..+.
T Consensus 170 --~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 170 --EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred --HHHHHHHHHHcCCCHHHHH
Confidence 2336788999999887554
No 102
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=86.02 E-value=3.4 Score=47.23 Aligned_cols=113 Identities=14% Similarity=0.024 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhcCCcEEEEEEcCCCc--hhhhhccccCCCCCCCcEEEE--EeCChHH-Hhhc-CCCceEEcCCCCHHHH
Q 042822 18 ARASMLYAQLKKSRKILVILDNVWTE--LHLKDVGIPFGDEHKGCKVLL--TTRGRDL-LSRM-GSEADVRMDILNEEEA 91 (775)
Q Consensus 18 ~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiv--TTR~~~v-~~~~-~~~~~~~l~~L~~~~~ 91 (775)
..+..|.+.+. .++++++-|+.|.. ..|+.++..+....+...|++ ||++... .... .....+.+.+++.+|.
T Consensus 280 ~~Q~~Ll~~Le-~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi 358 (615)
T TIGR02903 280 LLQNKLLKVLE-DKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDI 358 (615)
T ss_pred HHHHHHHHHHh-hCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHH
Confidence 35677888887 68999997777765 358888777766666665665 6775432 1111 1224678999999999
Q ss_pred HHHHHHHhCCCCCcchhhHHHHHHHHHhCCCchhHHHHHHH
Q 042822 92 WRLFEVKLGNDGLIRRMKSTATQIVKQCGGLPIALEPIAKA 132 (775)
Q Consensus 92 ~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~ 132 (775)
+.++.+.+......- -.++.+.|.+.+..-+-|+..++..
T Consensus 359 ~~Il~~~a~~~~v~l-s~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 359 ALIVLNAAEKINVHL-AAGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 999999874221100 0234444555444335555544433
No 103
>PRK08727 hypothetical protein; Validated
Probab=85.96 E-value=3.2 Score=40.96 Aligned_cols=95 Identities=17% Similarity=0.142 Sum_probs=58.3
Q ss_pred CcEEEEEEcCCCch---hhhh-ccccCCC-CCCCcEEEEEeCCh---------HHHhhcCCCceEEcCCCCHHHHHHHHH
Q 042822 31 RKILVILDNVWTEL---HLKD-VGIPFGD-EHKGCKVLLTTRGR---------DLLSRMGSEADVRMDILNEEEAWRLFE 96 (775)
Q Consensus 31 kr~LlVlDdv~~~~---~~~~-l~~~~~~-~~~gs~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~ 96 (775)
+..+||+||+.... .|+. +...+.. ...|..||+||+.. ++...+.....+++++++.++-.+++.
T Consensus 93 ~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~ 172 (233)
T PRK08727 93 GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLR 172 (233)
T ss_pred cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHH
Confidence 45699999997542 3432 2221111 12456699999853 222334445689999999999999999
Q ss_pred HHhCCCCCcchhhHHHHHHHHHhCCCchhH
Q 042822 97 VKLGNDGLIRRMKSTATQIVKQCGGLPIAL 126 (775)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~i~~~c~glPLai 126 (775)
+++...... --.+...-|++.+.|-.-++
T Consensus 173 ~~a~~~~l~-l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 173 ERAQRRGLA-LDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHcCCC-CCHHHHHHHHHhCCCCHHHH
Confidence 987321111 11355677888887655444
No 104
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=85.18 E-value=4.8 Score=44.56 Aligned_cols=96 Identities=14% Similarity=0.117 Sum_probs=64.8
Q ss_pred CCcEEEEEEcCCCc--hhhhhccccCCCCCCCcEEE-EEeCChHHHhhc-CCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTE--LHLKDVGIPFGDEHKGCKVL-LTTRGRDLLSRM-GSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ii-vTTR~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
+++-++|+|+++.. ..|+.+...+......+++| +||+...+...+ .....+++.+++.++..+.+.+.+......
T Consensus 127 ~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ 206 (507)
T PRK06645 127 GKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLK 206 (507)
T ss_pred CCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 56778999999975 45777766665545556655 555655665443 234579999999999999999888332211
Q ss_pred chhhHHHHHHHHHhCCCchhH
Q 042822 106 RRMKSTATQIVKQCGGLPIAL 126 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glPLai 126 (775)
-+ .+....|++.++|-+--+
T Consensus 207 ie-~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 207 TD-IEALRIIAYKSEGSARDA 226 (507)
T ss_pred CC-HHHHHHHHHHcCCCHHHH
Confidence 11 345677899999876544
No 105
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=84.73 E-value=4.8 Score=42.36 Aligned_cols=107 Identities=10% Similarity=0.075 Sum_probs=65.9
Q ss_pred HHHHHHHHh----cCCcEEEEEEcCCCch--hhhhccccCCCCCCCcE-EEEEeCChHHHhhc-CCCceEEcCCCCHHHH
Q 042822 20 ASMLYAQLK----KSRKILVILDNVWTEL--HLKDVGIPFGDEHKGCK-VLLTTRGRDLLSRM-GSEADVRMDILNEEEA 91 (775)
Q Consensus 20 ~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~-iivTTR~~~v~~~~-~~~~~~~l~~L~~~~~ 91 (775)
+..+.+++. .+++-++|+|++.... ..+.+...+.....+.. |++|++-..+.... .-...+++.+++.++.
T Consensus 126 iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~ 205 (351)
T PRK09112 126 IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDEL 205 (351)
T ss_pred HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHH
Confidence 445555554 2567789999998763 34444444433333444 45554444443332 2245899999999999
Q ss_pred HHHHHHHhCCCCCcchhhHHHHHHHHHhCCCchhHHHH
Q 042822 92 WRLFEVKLGNDGLIRRMKSTATQIVKQCGGLPIALEPI 129 (775)
Q Consensus 92 ~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 129 (775)
.+.+...+...... .+....+++.++|.|.....+
T Consensus 206 ~~~L~~~~~~~~~~---~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 206 KKALSHLGSSQGSD---GEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred HHHHHHhhcccCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 99998754221111 344678999999999866543
No 106
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.31 E-value=0.77 Score=27.21 Aligned_cols=19 Identities=47% Similarity=0.648 Sum_probs=12.5
Q ss_pred CcccEEEecCCCCCCCCcc
Q 042822 330 RELKVVDLTNMQLFSLPSS 348 (775)
Q Consensus 330 ~~L~~L~l~~~~~~~lp~~ 348 (775)
++|++|+|++|.+..+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566777777777666654
No 107
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.31 E-value=0.77 Score=27.21 Aligned_cols=19 Identities=47% Similarity=0.648 Sum_probs=12.5
Q ss_pred CcccEEEecCCCCCCCCcc
Q 042822 330 RELKVVDLTNMQLFSLPSS 348 (775)
Q Consensus 330 ~~L~~L~l~~~~~~~lp~~ 348 (775)
++|++|+|++|.+..+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566777777777666654
No 108
>PRK08084 DNA replication initiation factor; Provisional
Probab=83.43 E-value=3.1 Score=41.12 Aligned_cols=96 Identities=18% Similarity=0.158 Sum_probs=59.5
Q ss_pred EEEEEEcCCCc---hhhhh-ccccCCC-CCCC-cEEEEEeCCh---------HHHhhcCCCceEEcCCCCHHHHHHHHHH
Q 042822 33 ILVILDNVWTE---LHLKD-VGIPFGD-EHKG-CKVLLTTRGR---------DLLSRMGSEADVRMDILNEEEAWRLFEV 97 (775)
Q Consensus 33 ~LlVlDdv~~~---~~~~~-l~~~~~~-~~~g-s~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~ 97 (775)
-+|++|||... .+|+. +...+.. -..| .++|+||+.. +....+....+++++++++++-.+.+.+
T Consensus 99 dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~ 178 (235)
T PRK08084 99 SLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQL 178 (235)
T ss_pred CEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHH
Confidence 37889999764 34543 2222211 1123 3689998754 3344466678999999999999999988
Q ss_pred HhCCCCCcchhhHHHHHHHHHhCCCchhHHHH
Q 042822 98 KLGNDGLIRRMKSTATQIVKQCGGLPIALEPI 129 (775)
Q Consensus 98 ~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 129 (775)
+|..... .--+++..-|++.+.|-.-++..+
T Consensus 179 ~a~~~~~-~l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 179 RARLRGF-ELPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHHcCC-CCCHHHHHHHHHhhcCCHHHHHHH
Confidence 7722211 111456777888887766555433
No 109
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=82.80 E-value=2.6 Score=42.13 Aligned_cols=90 Identities=14% Similarity=0.118 Sum_probs=60.8
Q ss_pred EEEEEEcCCCc--hhhhhccccCCCCCCCcEEEEEeCChHHH-hh-cCCCceEEcCCCCHHHHHHHHHHHhCCCCCcchh
Q 042822 33 ILVILDNVWTE--LHLKDVGIPFGDEHKGCKVLLTTRGRDLL-SR-MGSEADVRMDILNEEEAWRLFEVKLGNDGLIRRM 108 (775)
Q Consensus 33 ~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~~v~-~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~ 108 (775)
=.+|||+++.. +.|..++....+....+|.|..|-.-... .. ..-...|..++|.+++..+-++..|......-+
T Consensus 131 KiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d- 209 (346)
T KOG0989|consen 131 KIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDID- 209 (346)
T ss_pred eEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC-
Confidence 36789999876 56988877777767778866655543222 11 122346889999999999999999833222111
Q ss_pred hHHHHHHHHHhCCCc
Q 042822 109 KSTATQIVKQCGGLP 123 (775)
Q Consensus 109 ~~~~~~i~~~c~glP 123 (775)
.+..+.|++.++|--
T Consensus 210 ~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 210 DDALKLIAKISDGDL 224 (346)
T ss_pred HHHHHHHHHHcCCcH
Confidence 355778888888753
No 110
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=81.41 E-value=0.82 Score=27.16 Aligned_cols=17 Identities=18% Similarity=0.622 Sum_probs=10.6
Q ss_pred cCCCeEEeccCCCCCcc
Q 042822 625 AELRTMKVENCDELSNI 641 (775)
Q Consensus 625 ~~L~~L~l~~C~~L~~l 641 (775)
|+|++|+|++|+++++.
T Consensus 2 ~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 2 PNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCEeCCCCCCCcCHH
Confidence 56666666666666543
No 111
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=81.22 E-value=4.5 Score=46.37 Aligned_cols=98 Identities=12% Similarity=0.115 Sum_probs=65.0
Q ss_pred CCcEEEEEEcCCCch--hhhhccccCCCCCCCcEEEEEeCChH-HHhh-cCCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTEL--HLKDVGIPFGDEHKGCKVLLTTRGRD-LLSR-MGSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
++.=++|||++.... .|+.+...+-......++|+||.+.+ +... ..-...|.+++++.++..+.+.+.++.....
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 355578899999774 47766655555455678777777653 3222 2224579999999999999998887432211
Q ss_pred chhhHHHHHHHHHhCCCc-hhHHH
Q 042822 106 RRMKSTATQIVKQCGGLP-IALEP 128 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glP-Lai~~ 128 (775)
- -.+..+.|++.++|.. -|+..
T Consensus 198 i-d~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 198 F-EPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred C-CHHHHHHHHHHcCCCHHHHHHH
Confidence 1 1356788999998855 45554
No 112
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.57 E-value=10 Score=42.04 Aligned_cols=96 Identities=14% Similarity=0.122 Sum_probs=63.1
Q ss_pred CCcEEEEEEcCCCc--hhhhhccccCCCCCCCcEEEEEeC-ChHHHhhc-CCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTE--LHLKDVGIPFGDEHKGCKVLLTTR-GRDLLSRM-GSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR-~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
+++-++|+|+++.. ..++.+...+........+|++|. ...+...+ .....+++.+++.++..+.+.+.+......
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~ 194 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE 194 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 46678999999865 346666555554444555555554 34443332 234589999999999999999987322111
Q ss_pred chhhHHHHHHHHHhCCCchhH
Q 042822 106 RRMKSTATQIVKQCGGLPIAL 126 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glPLai 126 (775)
- -.+....|++.++|.+--+
T Consensus 195 i-~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 195 A-EPEALQLVARLADGAMRDA 214 (504)
T ss_pred C-CHHHHHHHHHHcCCCHHHH
Confidence 1 1356788999999988644
No 113
>PRK05642 DNA replication initiation factor; Validated
Probab=79.27 E-value=5.2 Score=39.52 Aligned_cols=93 Identities=19% Similarity=0.197 Sum_probs=57.3
Q ss_pred EEEEEcCCCc---hhhhh-ccccCCC-CCCCcEEEEEeCChHH---------HhhcCCCceEEcCCCCHHHHHHHHHHHh
Q 042822 34 LVILDNVWTE---LHLKD-VGIPFGD-EHKGCKVLLTTRGRDL---------LSRMGSEADVRMDILNEEEAWRLFEVKL 99 (775)
Q Consensus 34 LlVlDdv~~~---~~~~~-l~~~~~~-~~~gs~iivTTR~~~v---------~~~~~~~~~~~l~~L~~~~~~~Lf~~~a 99 (775)
++|+||+... ..|+. +...+.. ...|.+||+||+...- ...++...++++++++.++-.+.++.++
T Consensus 100 ~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 100 LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 6788999743 35543 3322211 1245678888875321 1223445689999999999999999766
Q ss_pred CCC--CCcchhhHHHHHHHHHhCCCchhHHHH
Q 042822 100 GND--GLIRRMKSTATQIVKQCGGLPIALEPI 129 (775)
Q Consensus 100 ~~~--~~~~~~~~~~~~i~~~c~glPLai~~~ 129 (775)
... ..+ .++..-|++++.|-.-++..+
T Consensus 180 ~~~~~~l~---~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 180 SRRGLHLT---DEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHcCCCCC---HHHHHHHHHhcCCCHHHHHHH
Confidence 221 122 366777888887766555433
No 114
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.21 E-value=10 Score=40.31 Aligned_cols=97 Identities=13% Similarity=0.148 Sum_probs=62.4
Q ss_pred CCcEEEEEEcCCCch--hhhhccccCCCCCCCcEEEEEeCCh-HHHhh-cCCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTEL--HLKDVGIPFGDEHKGCKVLLTTRGR-DLLSR-MGSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
+++-++|+|++.... .++.+...+.......++|++|.+. .+.+. .+-...+++++++.++..+.+...+......
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~ 197 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESID 197 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 355689999998764 4666655555444566667666543 33332 2234689999999999998888876221111
Q ss_pred chhhHHHHHHHHHhCCCchhHH
Q 042822 106 RRMKSTATQIVKQCGGLPIALE 127 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glPLai~ 127 (775)
- -.+.++.|++.++|.|-.+.
T Consensus 198 i-~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 198 T-DEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred C-CHHHHHHHHHHcCCCHHHHH
Confidence 1 13457788999999886443
No 115
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=78.62 E-value=3.7 Score=36.00 Aligned_cols=65 Identities=26% Similarity=0.353 Sum_probs=44.7
Q ss_pred hHHHHhCCCCcc-ccHHHHHHHHHHHHhcCCcEEEEEEcCCCc-h--hhhhccccCCCCCCCcEEEEEeCC
Q 042822 2 EIAEQIGLTLDK-ETEHARASMLYAQLKKSRKILVILDNVWTE-L--HLKDVGIPFGDEHKGCKVLLTTRG 68 (775)
Q Consensus 2 ~i~~~l~~~~~~-~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~-~--~~~~l~~~~~~~~~gs~iivTTR~ 68 (775)
+|+++++..... .+..+..+.+.+.+.+.+..+||+|++... . .++.+.... + ..+-+||++.+.
T Consensus 57 ~i~~~l~~~~~~~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~-~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 57 EILEALGLPLKSRQTSDELRSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLL-N-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHT-SSSSTS-HHHHHHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHT-C-SCBEEEEEEESS
T ss_pred HHHHHhCccccccCCHHHHHHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHH-h-CCCCeEEEEECh
Confidence 678888887665 677888899999998666679999999876 3 234443222 2 566677777664
No 116
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=78.29 E-value=15 Score=39.12 Aligned_cols=101 Identities=14% Similarity=0.183 Sum_probs=57.9
Q ss_pred HHHHHHHhcCCcEEEEEEcCCCch----------------hhhhccccCC--CCCCCcEEEEEeCChHHHh-----hcCC
Q 042822 21 SMLYAQLKKSRKILVILDNVWTEL----------------HLKDVGIPFG--DEHKGCKVLLTTRGRDLLS-----RMGS 77 (775)
Q Consensus 21 ~~l~~~l~~~kr~LlVlDdv~~~~----------------~~~~l~~~~~--~~~~gs~iivTTR~~~v~~-----~~~~ 77 (775)
..+.+........+|++||++... .+..+...+. ....+.+||.||....... ....
T Consensus 205 ~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grf 284 (364)
T TIGR01242 205 REIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRF 284 (364)
T ss_pred HHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccC
Confidence 334444443467899999997531 1112211111 1234677888887543221 1122
Q ss_pred CceEEcCCCCHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHhCCCc
Q 042822 78 EADVRMDILNEEEAWRLFEVKLGNDGLIRRMKSTATQIVKQCGGLP 123 (775)
Q Consensus 78 ~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glP 123 (775)
...++++..+.++.+++|+.++......++. -...+++.+.|..
T Consensus 285 d~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 285 DRIIEVPLPDFEGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGAS 328 (364)
T ss_pred ceEEEeCCcCHHHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCC
Confidence 4578999999999999999988433222211 1456777777654
No 117
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=77.78 E-value=54 Score=34.61 Aligned_cols=155 Identities=13% Similarity=0.116 Sum_probs=86.7
Q ss_pred HHHHHHHHhcCCcEEEEEEcCCCch--hhhhccccCCCCCCCcEEEE--EeCChHHH---hhcCCCceEEcCCCCHHHHH
Q 042822 20 ASMLYAQLKKSRKILVILDNVWTEL--HLKDVGIPFGDEHKGCKVLL--TTRGRDLL---SRMGSEADVRMDILNEEEAW 92 (775)
Q Consensus 20 ~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iiv--TTR~~~v~---~~~~~~~~~~l~~L~~~~~~ 92 (775)
+++-++....|+|.+|.+|.|..-. +-+.+ +|.-.+|.-|+| ||-+.... ....-..+|++++|+.+|-.
T Consensus 93 ~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~ 169 (436)
T COG2256 93 IEEARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIK 169 (436)
T ss_pred HHHHHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHH
Confidence 3344344444799999999998653 33322 334456776665 56554321 11234568999999999999
Q ss_pred HHHHHHh-CC-CC---Ccchh-hHHHHHHHHHhCCCchhHHHHHHHH---hcCC---cHHHHHHHHHHhcCCCcCcchhh
Q 042822 93 RLFEVKL-GN-DG---LIRRM-KSTATQIVKQCGGLPIALEPIAKAL---RNKT---ESECWKNALHELRMPTENNFHRE 160 (775)
Q Consensus 93 ~Lf~~~a-~~-~~---~~~~~-~~~~~~i~~~c~glPLai~~~g~~L---~~~~---~~~~w~~~l~~l~~~~~~~~~~~ 160 (775)
+++.+.+ .. .. ....+ ++.-.-+++.++|---+.-...... .... ..+.-++++.+ .....+...+.
T Consensus 170 ~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~-~~~~~Dk~gD~ 248 (436)
T COG2256 170 KLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQR-RSARFDKDGDA 248 (436)
T ss_pred HHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhh-hhhccCCCcch
Confidence 9999855 11 11 11112 3456678888888755443322222 1111 12323444333 11122223334
Q ss_pred hhhHHHHHHhhHhccCch
Q 042822 161 LGKAYTAIKLSYDALKGE 178 (775)
Q Consensus 161 ~~~~~~~l~~sy~~L~~~ 178 (775)
+.++.+++.-|...-.++
T Consensus 249 hYdliSA~hKSvRGSD~d 266 (436)
T COG2256 249 HYDLISALHKSVRGSDPD 266 (436)
T ss_pred HHHHHHHHHHhhccCCcC
Confidence 447888888888888776
No 118
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=77.28 E-value=3.7 Score=40.04 Aligned_cols=94 Identities=19% Similarity=0.201 Sum_probs=52.8
Q ss_pred CcEEEEEEcCCCch---hhhh-ccccCCC-CCCCcEEEEEeCCh---------HHHhhcCCCceEEcCCCCHHHHHHHHH
Q 042822 31 RKILVILDNVWTEL---HLKD-VGIPFGD-EHKGCKVLLTTRGR---------DLLSRMGSEADVRMDILNEEEAWRLFE 96 (775)
Q Consensus 31 kr~LlVlDdv~~~~---~~~~-l~~~~~~-~~~gs~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~ 96 (775)
.-=+|++|||+... .|+. +..-+.. ...|-+||+|++.. +....+...-++++++++.++-.+++.
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~ 176 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQ 176 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHH
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHH
Confidence 34477889998653 2432 1111111 12456899999653 223334566789999999999999999
Q ss_pred HHhCC--CCCcchhhHHHHHHHHHhCCCchhHH
Q 042822 97 VKLGN--DGLIRRMKSTATQIVKQCGGLPIALE 127 (775)
Q Consensus 97 ~~a~~--~~~~~~~~~~~~~i~~~c~glPLai~ 127 (775)
++|.. -..+ ++++.-+++.+.+..-.+.
T Consensus 177 ~~a~~~~~~l~---~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 177 KKAKERGIELP---EEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHHHTT--S----HHHHHHHHHHTTSSHHHHH
T ss_pred HHHHHhCCCCc---HHHHHHHHHhhcCCHHHHH
Confidence 98832 2222 3556667777766554443
No 119
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=76.96 E-value=14 Score=38.62 Aligned_cols=95 Identities=12% Similarity=0.175 Sum_probs=59.5
Q ss_pred CCcEEEEEEcCCCc--hhhhhccccCCCCCCCcEEEEEeCCh-HHHhh-cCCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTE--LHLKDVGIPFGDEHKGCKVLLTTRGR-DLLSR-MGSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
+++=.+|+|+++.- +..+.+...+-.-..++.+|.||.+. .+... ..-...+.+.+++.+++.+.+........
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~~-- 182 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPESD-- 182 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccCC--
Confidence 34445567999875 33555544444434566777777665 33333 22345799999999999988876542111
Q ss_pred chhhHHHHHHHHHhCCCchhHHHH
Q 042822 106 RRMKSTATQIVKQCGGLPIALEPI 129 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glPLai~~~ 129 (775)
.+.+..++..++|.|..+..+
T Consensus 183 ---~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 183 ---ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ---hHHHHHHHHHcCCCHHHHHHH
Confidence 233567789999999755443
No 120
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=76.80 E-value=17 Score=38.22 Aligned_cols=97 Identities=13% Similarity=0.111 Sum_probs=58.7
Q ss_pred CcEEEEEEcCCCch--hhhhccccCCCCCCCcEEEEEeCCh-HHHhhc-CCCceEEcCCCCHHHHHHHHHHHhCCCCCcc
Q 042822 31 RKILVILDNVWTEL--HLKDVGIPFGDEHKGCKVLLTTRGR-DLLSRM-GSEADVRMDILNEEEAWRLFEVKLGNDGLIR 106 (775)
Q Consensus 31 kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~ 106 (775)
.+-+||+||+.... ..+.+...+......+++|+||... .+.... .....+++.+++.++..+.+...+......
T Consensus 125 ~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~- 203 (337)
T PRK12402 125 DYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD- 203 (337)
T ss_pred CCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-
Confidence 34589999997653 2333443333334456787777543 222221 223578899999999999998877221111
Q ss_pred hhhHHHHHHHHHhCCCchhHHH
Q 042822 107 RMKSTATQIVKQCGGLPIALEP 128 (775)
Q Consensus 107 ~~~~~~~~i~~~c~glPLai~~ 128 (775)
--.+....+++.++|.+-.+..
T Consensus 204 ~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 204 YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CCHHHHHHHHHHcCCCHHHHHH
Confidence 1135678888889887655543
No 121
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.95 E-value=9.8 Score=43.01 Aligned_cols=98 Identities=11% Similarity=0.137 Sum_probs=63.5
Q ss_pred CCcEEEEEEcCCCc--hhhhhccccCCCCCCCcE-EEEEeCChHHHhhc-CCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTE--LHLKDVGIPFGDEHKGCK-VLLTTRGRDLLSRM-GSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~-iivTTR~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
+++-++|+|++... ..++.+...+-.-....+ |++||....+...+ .-...|.+..++.++..+.+.+.+......
T Consensus 123 gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~ 202 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA 202 (700)
T ss_pred CCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC
Confidence 56668999999876 346666555544334455 55555555554332 224679999999999999988877322211
Q ss_pred chhhHHHHHHHHHhCCCchhHHH
Q 042822 106 RRMKSTATQIVKQCGGLPIALEP 128 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glPLai~~ 128 (775)
.+ .+..+.|++.++|.|.-...
T Consensus 203 ~d-~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 203 HE-VNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred CC-HHHHHHHHHHcCCCHHHHHH
Confidence 11 34567899999999865443
No 122
>PRK06620 hypothetical protein; Validated
Probab=75.41 E-value=10 Score=36.85 Aligned_cols=91 Identities=13% Similarity=0.048 Sum_probs=54.6
Q ss_pred cEEEEEEcCCCchhhhhccccCC-CCCCCcEEEEEeCChH-------HHhhcCCCceEEcCCCCHHHHHHHHHHHhCCC-
Q 042822 32 KILVILDNVWTELHLKDVGIPFG-DEHKGCKVLLTTRGRD-------LLSRMGSEADVRMDILNEEEAWRLFEVKLGND- 102 (775)
Q Consensus 32 r~LlVlDdv~~~~~~~~l~~~~~-~~~~gs~iivTTR~~~-------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~- 102 (775)
.-++++|||...++. .+...+. -...|..||+|++... ....+....+++++++++++-..++.+++...
T Consensus 86 ~d~lliDdi~~~~~~-~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 86 YNAFIIEDIENWQEP-ALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CCEEEEeccccchHH-HHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 347888999743221 1111110 0134668999987542 22335556689999999999888888877321
Q ss_pred -CCcchhhHHHHHHHHHhCCCchhH
Q 042822 103 -GLIRRMKSTATQIVKQCGGLPIAL 126 (775)
Q Consensus 103 -~~~~~~~~~~~~i~~~c~glPLai 126 (775)
..+ +++.+-|++++.|---++
T Consensus 165 l~l~---~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 165 VTIS---RQIIDFLLVNLPREYSKI 186 (214)
T ss_pred CCCC---HHHHHHHHHHccCCHHHH
Confidence 122 456677777776654433
No 123
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=75.38 E-value=9.8 Score=41.68 Aligned_cols=100 Identities=10% Similarity=0.125 Sum_probs=63.0
Q ss_pred CcEEEEEEcCCCch---hhh-hccccCCC-CCCCcEEEEEeCCh---------HHHhhcCCCceEEcCCCCHHHHHHHHH
Q 042822 31 RKILVILDNVWTEL---HLK-DVGIPFGD-EHKGCKVLLTTRGR---------DLLSRMGSEADVRMDILNEEEAWRLFE 96 (775)
Q Consensus 31 kr~LlVlDdv~~~~---~~~-~l~~~~~~-~~~gs~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~ 96 (775)
+.-+||+||+.... .|. .+..-+.. ...|..||+|+... .+...+...-++.+++++.++-.+++.
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 34588899997542 232 22222211 12344688886532 333345566788999999999999999
Q ss_pred HHhCCCCC-cchhhHHHHHHHHHhCCCchhHHHHH
Q 042822 97 VKLGNDGL-IRRMKSTATQIVKQCGGLPIALEPIA 130 (775)
Q Consensus 97 ~~a~~~~~-~~~~~~~~~~i~~~c~glPLai~~~g 130 (775)
+++..... ..--.++..-|++.++|.|-.+.-+-
T Consensus 286 ~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 286 KEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 98832111 01124678889999999998875544
No 124
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=75.06 E-value=14 Score=39.15 Aligned_cols=100 Identities=10% Similarity=0.106 Sum_probs=62.8
Q ss_pred CCcEEEEEEcCCCc--hhhhhccccCCCCCCCcEEEEEeCChH-HHhh-cCCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTE--LHLKDVGIPFGDEHKGCKVLLTTRGRD-LLSR-MGSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
+++-++|+|++... ...+.+...+......+.+|++|.+.+ +.+. ......++..+++.++..+.+..++......
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~ 195 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK 195 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 35558889998655 345555555544445667667765443 3322 2234578899999999999888877221111
Q ss_pred chhhHHHHHHHHHhCCCchhHHHHH
Q 042822 106 RRMKSTATQIVKQCGGLPIALEPIA 130 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glPLai~~~g 130 (775)
-+ .+.+..+++.++|.|..+....
T Consensus 196 i~-~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 196 IE-DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred CC-HHHHHHHHHHcCCChHHHHHHH
Confidence 11 3567888999999887664443
No 125
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=75.03 E-value=8.7 Score=37.72 Aligned_cols=101 Identities=15% Similarity=0.118 Sum_probs=58.2
Q ss_pred cEEEEEEcCCCchhhh--hccccCCC-CCCCc-EEEEEeCChHHHh--------hcCCCceEEcCCCCHHHHHHHHHHHh
Q 042822 32 KILVILDNVWTELHLK--DVGIPFGD-EHKGC-KVLLTTRGRDLLS--------RMGSEADVRMDILNEEEAWRLFEVKL 99 (775)
Q Consensus 32 r~LlVlDdv~~~~~~~--~l~~~~~~-~~~gs-~iivTTR~~~v~~--------~~~~~~~~~l~~L~~~~~~~Lf~~~a 99 (775)
.-+||+||+.....+. .+...+.. ...|. .||+|++...... .+.....++++++++++-..++.+.+
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 3478889997653222 22222211 12333 4666666433221 23334689999999988777777655
Q ss_pred CCCCCcchhhHHHHHHHHHhCCCchhHHHHHHHH
Q 042822 100 GNDGLIRRMKSTATQIVKQCGGLPIALEPIAKAL 133 (775)
Q Consensus 100 ~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L 133 (775)
...... --++..+.+++.+.|.+..++.+-..+
T Consensus 171 ~~~~v~-l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 171 AERGLQ-LADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHcCCC-CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 211111 113567788888999998877666544
No 126
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=74.27 E-value=17 Score=38.99 Aligned_cols=93 Identities=13% Similarity=0.041 Sum_probs=59.6
Q ss_pred CCcEEEEEEcCCCch--hhhhccccCCCCCCCcEEEEEeCCh-HHHhh-cCCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTEL--HLKDVGIPFGDEHKGCKVLLTTRGR-DLLSR-MGSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
+++-++|+|++.... ..+.+...+.....+..+|++|.+. .+... ..-...+.+.+++.++..+.+....+. .
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~---~ 192 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV---D 192 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC---C
Confidence 455578889998763 3444544444444556666666553 44433 223468999999999998888754321 1
Q ss_pred chhhHHHHHHHHHhCCCchhHHH
Q 042822 106 RRMKSTATQIVKQCGGLPIALEP 128 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glPLai~~ 128 (775)
.+.+..+++.++|-|.....
T Consensus 193 ---~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 193 ---PETARRAARASQGHIGRARR 212 (394)
T ss_pred ---HHHHHHHHHHcCCCHHHHHH
Confidence 24477889999999975543
No 127
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.83 E-value=18 Score=41.15 Aligned_cols=97 Identities=13% Similarity=0.110 Sum_probs=62.9
Q ss_pred CCcEEEEEEcCCCch--hhhhccccCCCCCCCcEEEEEeCCh-HHHhh-cCCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTEL--HLKDVGIPFGDEHKGCKVLLTTRGR-DLLSR-MGSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
+++-++|+|+|.... ..+.+...+.....+.++|+||.+. .+... ......+++.+++.++..+.+.+.+......
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~ 196 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA 196 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC
Confidence 566688999998763 4555555554444566777777654 22211 2334689999999999999998877322211
Q ss_pred chhhHHHHHHHHHhCCCchhHH
Q 042822 106 RRMKSTATQIVKQCGGLPIALE 127 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glPLai~ 127 (775)
-+ .+....|++.++|-+-.+.
T Consensus 197 id-~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 197 AD-QDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred CC-HHHHHHHHHHcCCCHHHHH
Confidence 11 3457789999999775543
No 128
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.49 E-value=17 Score=39.77 Aligned_cols=96 Identities=10% Similarity=-0.008 Sum_probs=62.0
Q ss_pred CCcEEEEEEcCCCc--hhhhhccccCCCCCCCcEEE-EEeCChHHHhh-cCCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTE--LHLKDVGIPFGDEHKGCKVL-LTTRGRDLLSR-MGSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ii-vTTR~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
+++-++|+|+|... +.++.+...+-.......+| +||....+... ..-...|.+.+++.++-.+.+.+.+......
T Consensus 120 g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~ 199 (484)
T PRK14956 120 GKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQ 199 (484)
T ss_pred CCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCC
Confidence 56668999999876 34666655554333344444 55554555433 2234579999999999998888877322211
Q ss_pred chhhHHHHHHHHHhCCCchhH
Q 042822 106 RRMKSTATQIVKQCGGLPIAL 126 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glPLai 126 (775)
- -.+....|++.++|.+--+
T Consensus 200 ~-e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 200 Y-DQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred C-CHHHHHHHHHHcCChHHHH
Confidence 1 1356788999999988543
No 129
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.91 E-value=17 Score=40.61 Aligned_cols=99 Identities=11% Similarity=0.130 Sum_probs=62.0
Q ss_pred CCcEEEEEEcCCCc--hhhhhccccCCCCCCCcEEE-EEeCChHHHhh-cCCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTE--LHLKDVGIPFGDEHKGCKVL-LTTRGRDLLSR-MGSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ii-vTTR~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
+++-++|+|++... +.++.+...+-......++| +||....+... ..-...+++++++.++-.+.+.+.+......
T Consensus 118 g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~ 197 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENIN 197 (546)
T ss_pred CCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCC
Confidence 56779999999865 34565655555444555555 55544444433 2234689999999999888887766221111
Q ss_pred chhhHHHHHHHHHhCCCch-hHHHH
Q 042822 106 RRMKSTATQIVKQCGGLPI-ALEPI 129 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glPL-ai~~~ 129 (775)
- -......|++.++|-+- |+..+
T Consensus 198 ~-e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 198 S-DEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred C-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 13456788999999654 44444
No 130
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.14 E-value=20 Score=42.18 Aligned_cols=99 Identities=15% Similarity=0.126 Sum_probs=63.7
Q ss_pred CCcEEEEEEcCCCc--hhhhhccccCCCCCCCcEEEEEe-CChHHHhh-cCCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTE--LHLKDVGIPFGDEHKGCKVLLTT-RGRDLLSR-MGSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTT-R~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
+++-++|+|++... +..+.+...+-......++|.+| ....+... ..-...|++.+|+.++..+.+.+.+......
T Consensus 118 gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~ 197 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLP 197 (944)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 57779999999876 34565554544434455555544 44444433 2234689999999999999998877322111
Q ss_pred chhhHHHHHHHHHhCCCchhHHHH
Q 042822 106 RRMKSTATQIVKQCGGLPIALEPI 129 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glPLai~~~ 129 (775)
--.+..+.|++.++|.|--+..+
T Consensus 198 -~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 198 -FEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred -CCHHHHHHHHHHcCCCHHHHHHH
Confidence 11356788999999988644433
No 131
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=68.93 E-value=13 Score=39.97 Aligned_cols=63 Identities=24% Similarity=0.221 Sum_probs=49.0
Q ss_pred CcEEEEEEcCCCchhhhhccccCCCCCCCcEEEEEeCChHHHh-----h-cCCCceEEcCCCCHHHHHHH
Q 042822 31 RKILVILDNVWTELHLKDVGIPFGDEHKGCKVLLTTRGRDLLS-----R-MGSEADVRMDILNEEEAWRL 94 (775)
Q Consensus 31 kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTTR~~~v~~-----~-~~~~~~~~l~~L~~~~~~~L 94 (775)
++..|+||.|.....|+.....+.+.+.. +|++|+-+..... . .|-...+++.||+..|-..+
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 56899999999999999877777776666 8999887765432 2 34456899999999887653
No 132
>PLN03025 replication factor C subunit; Provisional
Probab=68.48 E-value=10 Score=39.53 Aligned_cols=96 Identities=14% Similarity=0.072 Sum_probs=58.2
Q ss_pred CCcEEEEEEcCCCch--hhhhccccCCCCCCCcEEEEEeCCh-HHHhh-cCCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTEL--HLKDVGIPFGDEHKGCKVLLTTRGR-DLLSR-MGSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
+++-++|+|+++... ..+.+...+......+++|+||... .+.+. ......++++++++++..+.+...+......
T Consensus 98 ~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~ 177 (319)
T PLN03025 98 GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVP 177 (319)
T ss_pred CCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCC
Confidence 356689999998763 2233333333334556777766442 22221 1123578999999999999998887322111
Q ss_pred chhhHHHHHHHHHhCCCchhH
Q 042822 106 RRMKSTATQIVKQCGGLPIAL 126 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glPLai 126 (775)
-+ .+....|++.++|-.-.+
T Consensus 178 i~-~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 178 YV-PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred CC-HHHHHHHHHHcCCCHHHH
Confidence 11 345788899998876444
No 133
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.96 E-value=25 Score=39.81 Aligned_cols=103 Identities=13% Similarity=0.138 Sum_probs=64.4
Q ss_pred CCcEEEEEEcCCCc--hhhhhccccCCCCCCCcEEEEEeCC-hHHHhh-cCCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTE--LHLKDVGIPFGDEHKGCKVLLTTRG-RDLLSR-MGSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
+++-+||+|++... +.++.+...+........+|++|.. ..+... ..-...+++.+++.++..+.+...+......
T Consensus 118 g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~ 197 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD 197 (624)
T ss_pred CCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC
Confidence 56778999999766 3455555555433344555555544 444432 2223578999999999998888876321110
Q ss_pred chhhHHHHHHHHHhCCCc-hhHHHHHHHH
Q 042822 106 RRMKSTATQIVKQCGGLP-IALEPIAKAL 133 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glP-Lai~~~g~~L 133 (775)
--.+.++.|++.++|-+ -|+..+...+
T Consensus 198 -id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 198 -YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred -CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 01355788899999854 6777766544
No 134
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=67.26 E-value=0.13 Score=56.24 Aligned_cols=133 Identities=21% Similarity=0.199 Sum_probs=65.3
Q ss_pred cccEEEecCCCCC-----CCCcccccccCccEEEcCCCCCCC------ccc----cccCCcccEEEecCCCCcc-----c
Q 042822 331 ELKVVDLTNMQLF-----SLPSSIDLLLNLRTLCLDHGTLGD------ITI----IGELKNLEILSLIGSDIVE-----F 390 (775)
Q Consensus 331 ~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~L~~~~l~~------p~~----i~~l~~L~~L~l~~~~l~~-----l 390 (775)
.|++|++..|.++ .+.+.+....+++.++++.|.+.. +.. +....++++|.+++|.++. +
T Consensus 145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l 224 (478)
T KOG4308|consen 145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALL 224 (478)
T ss_pred HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHH
Confidence 3455555555544 233444455556666666665421 111 2235666667766665551 1
Q ss_pred chhhhccCC-CCEecccCCccccc----cchHHhhcc-ccccEEEcCCCcccceecccCCccccccccccccCCCCCCCE
Q 042822 391 PEELGKLTK-LRLLDLTNCFHLKV----IAANLIASF-TRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLPRLTT 464 (775)
Q Consensus 391 p~~i~~l~~-L~~L~l~~~~~l~~----~p~~~l~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~ 464 (775)
-..+...+. ++.|++..|..-.. +.+. +..+ ..+++++++.|.+... ......+.+..+++++.
T Consensus 225 ~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~-l~~~~~~l~~l~l~~nsi~~~---------~~~~L~~~l~~~~~l~~ 294 (478)
T KOG4308|consen 225 DEVLASGESLLRELDLASNKLGDVGVEKLLPC-LSVLSETLRVLDLSRNSITEK---------GVRDLAEVLVSCRQLEE 294 (478)
T ss_pred HHHHhccchhhHHHHHHhcCcchHHHHHHHHH-hcccchhhhhhhhhcCCcccc---------chHHHHHHHhhhHHHHH
Confidence 112334444 55566666532211 1222 3344 5567777777766521 12233344555566777
Q ss_pred EEEEeeCCC
Q 042822 465 LEIAVENDN 473 (775)
Q Consensus 465 L~l~~~~~~ 473 (775)
|.++.|...
T Consensus 295 l~l~~n~l~ 303 (478)
T KOG4308|consen 295 LSLSNNPLT 303 (478)
T ss_pred hhcccCccc
Confidence 777665543
No 135
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=66.86 E-value=3.5 Score=24.47 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=12.4
Q ss_pred cccEEEecCCCCcccch
Q 042822 376 NLEILSLIGSDIVEFPE 392 (775)
Q Consensus 376 ~L~~L~l~~~~l~~lp~ 392 (775)
+|+.|++++|+++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56777777777777775
No 136
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=66.77 E-value=38 Score=38.36 Aligned_cols=89 Identities=10% Similarity=0.052 Sum_probs=53.4
Q ss_pred EEEEEcCCCc---hhhhh-ccccCCC-CCCCcEEEEEeCCh---------HHHhhcCCCceEEcCCCCHHHHHHHHHHHh
Q 042822 34 LVILDNVWTE---LHLKD-VGIPFGD-EHKGCKVLLTTRGR---------DLLSRMGSEADVRMDILNEEEAWRLFEVKL 99 (775)
Q Consensus 34 LlVlDdv~~~---~~~~~-l~~~~~~-~~~gs~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a 99 (775)
+|||||+... +.|+. ++..+.. ...|..|||||+.. .+...+...-++++++.+.+.-..++.+++
T Consensus 380 LLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 380 ILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred EEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 7889999755 22322 2222211 12345688888752 233345566789999999999999999998
Q ss_pred CCCCCcchhhHHHHHHHHHhCCCc
Q 042822 100 GNDGLIRRMKSTATQIVKQCGGLP 123 (775)
Q Consensus 100 ~~~~~~~~~~~~~~~i~~~c~glP 123 (775)
......- -.++..-|++.+.+..
T Consensus 460 ~~r~l~l-~~eVi~yLa~r~~rnv 482 (617)
T PRK14086 460 VQEQLNA-PPEVLEFIASRISRNI 482 (617)
T ss_pred HhcCCCC-CHHHHHHHHHhccCCH
Confidence 3222110 1355666666665443
No 137
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=63.97 E-value=2.5 Score=24.43 Aligned_cols=9 Identities=44% Similarity=0.556 Sum_probs=2.5
Q ss_pred ccEEEecCC
Q 042822 377 LEILSLIGS 385 (775)
Q Consensus 377 L~~L~l~~~ 385 (775)
|++|++++|
T Consensus 4 L~~L~l~~n 12 (24)
T PF13516_consen 4 LETLDLSNN 12 (24)
T ss_dssp -SEEE-TSS
T ss_pred CCEEEccCC
Confidence 333333333
No 138
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=62.47 E-value=27 Score=36.26 Aligned_cols=96 Identities=11% Similarity=0.042 Sum_probs=58.1
Q ss_pred CcEEEEEEcCCCch--hhhhccccCCCCCCCcEEEEEeCCh-HHHhh-cCCCceEEcCCCCHHHHHHHHHHHhCCCCCcc
Q 042822 31 RKILVILDNVWTEL--HLKDVGIPFGDEHKGCKVLLTTRGR-DLLSR-MGSEADVRMDILNEEEAWRLFEVKLGNDGLIR 106 (775)
Q Consensus 31 kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~ 106 (775)
.+-+||+|++.... ..+.+...+......+++|+++... .+.+. ......+++++++.++....+...+......-
T Consensus 102 ~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i 181 (319)
T PRK00440 102 PFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEI 181 (319)
T ss_pred CceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCC
Confidence 35588899987652 3344444444334456777776432 22111 11234689999999999999888873221111
Q ss_pred hhhHHHHHHHHHhCCCchhHH
Q 042822 107 RMKSTATQIVKQCGGLPIALE 127 (775)
Q Consensus 107 ~~~~~~~~i~~~c~glPLai~ 127 (775)
-.+....+++.++|.+--+.
T Consensus 182 -~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 182 -TDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred -CHHHHHHHHHHcCCCHHHHH
Confidence 13467888999998876543
No 139
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=62.09 E-value=40 Score=34.41 Aligned_cols=69 Identities=12% Similarity=0.051 Sum_probs=43.7
Q ss_pred CcEEEEEEcCCCc-----------hhhhhccccCCCCCCCcEEEEEeCChHHHhhcC--------CCceEEcCCCCHHHH
Q 042822 31 RKILVILDNVWTE-----------LHLKDVGIPFGDEHKGCKVLLTTRGRDLLSRMG--------SEADVRMDILNEEEA 91 (775)
Q Consensus 31 kr~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~iivTTR~~~v~~~~~--------~~~~~~l~~L~~~~~ 91 (775)
..-+|++|++... +.++.+...+.....+-+||++|.....-.... ....+++++++.+|-
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl 200 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAEL 200 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHH
Confidence 4468889999632 123444444444445667777775443322211 135789999999999
Q ss_pred HHHHHHHh
Q 042822 92 WRLFEVKL 99 (775)
Q Consensus 92 ~~Lf~~~a 99 (775)
.+++...+
T Consensus 201 ~~I~~~~l 208 (284)
T TIGR02880 201 LVIAGLML 208 (284)
T ss_pred HHHHHHHH
Confidence 99998887
No 140
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=62.03 E-value=22 Score=38.29 Aligned_cols=95 Identities=9% Similarity=0.049 Sum_probs=62.0
Q ss_pred CCcEEEEEEcCCCc--hhhhhccccCCCCCCCcEEEEEe-CChHHHhhcC-CCceEEcCCCCHHHHHHHHHHHhCCC--C
Q 042822 30 SRKILVILDNVWTE--LHLKDVGIPFGDEHKGCKVLLTT-RGRDLLSRMG-SEADVRMDILNEEEAWRLFEVKLGND--G 103 (775)
Q Consensus 30 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTT-R~~~v~~~~~-~~~~~~l~~L~~~~~~~Lf~~~a~~~--~ 103 (775)
+++-++|+|++... +.++.+...+.+....+.+|++| +...+.+... ....+++++++.++..+.+...+... .
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~ 205 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGIS 205 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 45668889999865 35776666665555566666555 4444443321 23478899999999988888776221 1
Q ss_pred CcchhhHHHHHHHHHhCCCchhHH
Q 042822 104 LIRRMKSTATQIVKQCGGLPIALE 127 (775)
Q Consensus 104 ~~~~~~~~~~~i~~~c~glPLai~ 127 (775)
.. .+.+..|++.++|.+--+.
T Consensus 206 i~---~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 206 VD---ADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred CC---HHHHHHHHHHcCCCHHHHH
Confidence 21 3567889999999775443
No 141
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=61.61 E-value=36 Score=40.39 Aligned_cols=96 Identities=11% Similarity=0.133 Sum_probs=60.6
Q ss_pred CCcEEEEEEcCCCc--hhhhhccccCCCCCCCcEEEEEe-CChHHHhhc-CCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTE--LHLKDVGIPFGDEHKGCKVLLTT-RGRDLLSRM-GSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTT-R~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
+++=++|||++... +.++.|...+..-...+.+|++| ....+...+ .-...|++.+++.++-.+.+.+........
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~ 198 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP 198 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 45557889999876 34555655555444555655544 444454432 235689999999999988888776222111
Q ss_pred chhhHHHHHHHHHhCCCchhH
Q 042822 106 RRMKSTATQIVKQCGGLPIAL 126 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glPLai 126 (775)
- -.+....|++.++|-+..+
T Consensus 199 i-d~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 199 V-EPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred C-CHHHHHHHHHHcCCCHHHH
Confidence 1 1244677899999977444
No 142
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=61.42 E-value=42 Score=37.50 Aligned_cols=99 Identities=12% Similarity=0.146 Sum_probs=62.2
Q ss_pred CCcEEEEEEcCCCch--hhhhccccCCCCCCCcEEEEEeCCh-HHHhh-cCCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTEL--HLKDVGIPFGDEHKGCKVLLTTRGR-DLLSR-MGSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
+++=++|+|++.... ..+.+...+-.....+++|++|.+. .+... ..-...+++.+++.++..+.+.+.+......
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~ 195 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS 195 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 455688999997663 3454544444444556767666553 22221 1224689999999999999888777322111
Q ss_pred chhhHHHHHHHHHhCCCchhHHHH
Q 042822 106 RRMKSTATQIVKQCGGLPIALEPI 129 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glPLai~~~ 129 (775)
- -.+.+..|++.++|-+--+...
T Consensus 196 i-~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 196 Y-EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred C-CHHHHHHHHHHcCCcHHHHHHH
Confidence 1 1356788999999988555443
No 143
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=61.34 E-value=31 Score=39.49 Aligned_cols=99 Identities=13% Similarity=0.120 Sum_probs=61.9
Q ss_pred CCcEEEEEEcCCCch--hhhhccccCCCCCCCcEEE-EEeCChHHHhh-cCCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTEL--HLKDVGIPFGDEHKGCKVL-LTTRGRDLLSR-MGSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ii-vTTR~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
|++-++|+|+|.... ..+.+...+-......++| +||....+... ..-...|.+.+++.++....+.+.+......
T Consensus 118 g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~ 197 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIP 197 (647)
T ss_pred CCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 566789999998663 4555544444333445544 45544444432 2234689999999999999988876221111
Q ss_pred chhhHHHHHHHHHhCCCchhHHHH
Q 042822 106 RRMKSTATQIVKQCGGLPIALEPI 129 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glPLai~~~ 129 (775)
.+ .+..+.|++.++|.+--+..+
T Consensus 198 ~e-~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 198 FE-PRALQLLARAADGSMRDALSL 220 (647)
T ss_pred CC-HHHHHHHHHHcCCCHHHHHHH
Confidence 11 345678999999977644433
No 144
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=60.49 E-value=24 Score=40.46 Aligned_cols=97 Identities=8% Similarity=0.065 Sum_probs=59.6
Q ss_pred CCcEEEEEEcCCCchh--hhhccccCCCCCCCcEEEEEeCCh-HHHhh-cCCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTELH--LKDVGIPFGDEHKGCKVLLTTRGR-DLLSR-MGSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~gs~iivTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
+++-++|+|++..... .+.+...+.......++|++|.+. .+... .+-...+.+.+++.++..+.+.+.+......
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~ 197 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA 197 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 5667889999986532 444444443333455666666543 22221 2223468888999999999998877322211
Q ss_pred chhhHHHHHHHHHhCCCchhHH
Q 042822 106 RRMKSTATQIVKQCGGLPIALE 127 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glPLai~ 127 (775)
- -.+....|++.++|-+.-+.
T Consensus 198 i-d~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 198 Y-EPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred c-CHHHHHHHHHHhCCCHHHHH
Confidence 1 13567889999998875443
No 145
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=59.77 E-value=1.8e+02 Score=34.04 Aligned_cols=93 Identities=14% Similarity=0.206 Sum_probs=55.9
Q ss_pred CCcEEEEEEcCCCc--hhhhhccccCCCCCCCcEEEEE--eCCh--HHHhh-cCCCceEEcCCCCHHHHHHHHHHHhCC-
Q 042822 30 SRKILVILDNVWTE--LHLKDVGIPFGDEHKGCKVLLT--TRGR--DLLSR-MGSEADVRMDILNEEEAWRLFEVKLGN- 101 (775)
Q Consensus 30 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivT--TR~~--~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~- 101 (775)
+++.+||+|||+.- .+++.+...+ ..|+.++|+ |.+. .+... ..-...+.+++|+.++...++.+.+..
T Consensus 108 ~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~ 184 (725)
T PRK13341 108 GKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDK 184 (725)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHH
Confidence 46779999999754 4455554332 235555553 4432 12121 122457999999999999999887631
Q ss_pred -----CCCcchhhHHHHHHHHHhCCCchh
Q 042822 102 -----DGLIRRMKSTATQIVKQCGGLPIA 125 (775)
Q Consensus 102 -----~~~~~~~~~~~~~i~~~c~glPLa 125 (775)
.....--.+....|++.+.|.--.
T Consensus 185 ~~~~g~~~v~I~deaL~~La~~s~GD~R~ 213 (725)
T PRK13341 185 ERGYGDRKVDLEPEAEKHLVDVANGDARS 213 (725)
T ss_pred HhhcCCcccCCCHHHHHHHHHhCCCCHHH
Confidence 111111145567888888876443
No 146
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=59.68 E-value=6.9 Score=23.32 Aligned_cols=15 Identities=40% Similarity=0.432 Sum_probs=8.5
Q ss_pred CcccEEEecCCCCcc
Q 042822 375 KNLEILSLIGSDIVE 389 (775)
Q Consensus 375 ~~L~~L~l~~~~l~~ 389 (775)
++|+.|++++|+|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 456666666665543
No 147
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.22 E-value=47 Score=37.90 Aligned_cols=97 Identities=9% Similarity=0.077 Sum_probs=61.8
Q ss_pred CCcEEEEEEcCCCc--hhhhhccccCCCCCCCcEEEEEe-CChHHHhh-cCCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTE--LHLKDVGIPFGDEHKGCKVLLTT-RGRDLLSR-MGSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTT-R~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
++.=++|+|+|+.. +.++.+...+.......++|++| ....+... ..-...+++++++.++..+.+.+.+......
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ 202 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP 202 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 45558899999876 34666655554444455655554 44444332 2335689999999999999998877322211
Q ss_pred chhhHHHHHHHHHhCCCchhHH
Q 042822 106 RRMKSTATQIVKQCGGLPIALE 127 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glPLai~ 127 (775)
-+ .+....|++.++|-+--+.
T Consensus 203 ie-~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 203 AE-PQALRLLARAARGSMRDAL 223 (618)
T ss_pred CC-HHHHHHHHHHcCCCHHHHH
Confidence 11 3457788899988775443
No 148
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=59.11 E-value=57 Score=33.81 Aligned_cols=91 Identities=13% Similarity=0.136 Sum_probs=59.4
Q ss_pred CCcEEEEEEcCCCc--hhhhhccccCCCCCCCcEEEEEeCCh-HHHhhc-CCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTE--LHLKDVGIPFGDEHKGCKVLLTTRGR-DLLSRM-GSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
+++=.+|+|+++.. +..+.+...+-.-..++.+|.+|.+. .+...+ .-...+.+.+++.+++.+-+... +.+
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~-~~~--- 182 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQ-GIT--- 182 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHc-CCc---
Confidence 44557778999876 34565555555445567766666554 454443 33568999999999998877543 211
Q ss_pred chhhHHHHHHHHHhCCCchhHHHH
Q 042822 106 RRMKSTATQIVKQCGGLPIALEPI 129 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glPLai~~~ 129 (775)
.+..+++.++|.|+.+..+
T Consensus 183 -----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 183 -----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred -----hHHHHHHHcCCCHHHHHHH
Confidence 1356789999999876543
No 149
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=58.58 E-value=67 Score=33.42 Aligned_cols=91 Identities=11% Similarity=0.070 Sum_probs=59.7
Q ss_pred CCcEEEEEEcCCCch--hhhhccccCCCCCCCcEEEEEeCCh-HHHhhc-CCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTEL--HLKDVGIPFGDEHKGCKVLLTTRGR-DLLSRM-GSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
+++=.+|+|+++.-. ..+.+...+-....++.+|.||.+. .+...+ .-...+.+.+++.++..+.+....+..
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~~~--- 182 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSSAE--- 182 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhccC---
Confidence 566677889998763 3555555555445566777777654 444332 235689999999999988887654221
Q ss_pred chhhHHHHHHHHHhCCCchhH
Q 042822 106 RRMKSTATQIVKQCGGLPIAL 126 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glPLai 126 (775)
...+...+..++|.|..+
T Consensus 183 ---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 183 ---ISEILTALRINYGRPLLA 200 (325)
T ss_pred ---hHHHHHHHHHcCCCHHHH
Confidence 112556788999999633
No 150
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=57.20 E-value=41 Score=37.08 Aligned_cols=100 Identities=13% Similarity=0.113 Sum_probs=61.1
Q ss_pred CCcEEEEEEcCCCc--hhhhhccccCCCCCCCcEEEE-EeCChHHHhhc-CCCceEEcCCCCHHHHHHHHHHHhCC--CC
Q 042822 30 SRKILVILDNVWTE--LHLKDVGIPFGDEHKGCKVLL-TTRGRDLLSRM-GSEADVRMDILNEEEAWRLFEVKLGN--DG 103 (775)
Q Consensus 30 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiv-TTR~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~--~~ 103 (775)
+++-++|+|++..- +..+.+...+........+|+ ||....+.+.. .....+++++++.++-...+.+.+.. ..
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~ 195 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE 195 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC
Confidence 46669999999765 334545444443333444444 44334444432 23468999999999999888887722 12
Q ss_pred CcchhhHHHHHHHHHhCC-CchhHHHHHHH
Q 042822 104 LIRRMKSTATQIVKQCGG-LPIALEPIAKA 132 (775)
Q Consensus 104 ~~~~~~~~~~~i~~~c~g-lPLai~~~g~~ 132 (775)
.. .+....|++.++| ++.|+..+-.+
T Consensus 196 i~---~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 196 ID---REALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred CC---HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 22 3456778887754 46666666543
No 151
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=56.79 E-value=2.1e+02 Score=34.13 Aligned_cols=129 Identities=16% Similarity=0.147 Sum_probs=66.3
Q ss_pred hHHHHhC-CCC-ccccHHHHHHHHHHHHhc-C-CcEEEEEEcCCCch---h--hhhccccCCCCCCCcEEEE--EeCCh-
Q 042822 2 EIAEQIG-LTL-DKETEHARASMLYAQLKK-S-RKILVILDNVWTEL---H--LKDVGIPFGDEHKGCKVLL--TTRGR- 69 (775)
Q Consensus 2 ~i~~~l~-~~~-~~~~~~~~~~~l~~~l~~-~-kr~LlVlDdv~~~~---~--~~~l~~~~~~~~~gs~iiv--TTR~~- 69 (775)
.|+++|+ ..+ .+....+...++...+.+ . ...+||||+|+... + +-.+... ....+++|+| +|...
T Consensus 836 vI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~--~~~s~SKLiLIGISNdlD 913 (1164)
T PTZ00112 836 VLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDW--PTKINSKLVLIAISNTMD 913 (1164)
T ss_pred HHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHH--hhccCCeEEEEEecCchh
Confidence 3566663 222 223344556666666532 2 23589999998542 1 2222211 1123555544 34322
Q ss_pred -------HHHhhcCCCceEEcCCCCHHHHHHHHHHHhCC--CCC-cchhhHHHHHHHHHhCCCchhHHHHHHHH
Q 042822 70 -------DLLSRMGSEADVRMDILNEEEAWRLFEVKLGN--DGL-IRRMKSTATQIVKQCGGLPIALEPIAKAL 133 (775)
Q Consensus 70 -------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~--~~~-~~~~~~~~~~i~~~c~glPLai~~~g~~L 133 (775)
.+...++. ..+..+|.+.++-.+++..+|.. ... +..++-+|+.++..-|-.-.||.++-.+.
T Consensus 914 LperLdPRLRSRLg~-eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 914 LPERLIPRCRSRLAF-GRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred cchhhhhhhhhcccc-ccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 12222332 23566999999999999999832 222 22233444444444455566665554444
No 152
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=56.35 E-value=1.1e+02 Score=33.19 Aligned_cols=93 Identities=18% Similarity=0.177 Sum_probs=54.4
Q ss_pred EEEEEEcCCCch---hhh-hccccCCC-CCCCcEEEEEeCCh-H--------HHhhcCCCceEEcCCCCHHHHHHHHHHH
Q 042822 33 ILVILDNVWTEL---HLK-DVGIPFGD-EHKGCKVLLTTRGR-D--------LLSRMGSEADVRMDILNEEEAWRLFEVK 98 (775)
Q Consensus 33 ~LlVlDdv~~~~---~~~-~l~~~~~~-~~~gs~iivTTR~~-~--------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 98 (775)
-+||+||+.... .++ .+...+.. ...|..||+||... . +...+.....+++++.+.++-..++.+.
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 378899997542 121 12211111 11344577777542 1 2222344457999999999999999999
Q ss_pred hCCCCCcchhhHHHHHHHHHhCCCchhH
Q 042822 99 LGNDGLIRRMKSTATQIVKQCGGLPIAL 126 (775)
Q Consensus 99 a~~~~~~~~~~~~~~~i~~~c~glPLai 126 (775)
+......- -.++...|++.+.|..-.+
T Consensus 281 ~~~~~~~l-~~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 281 AEEEGLEL-PDEVLEFIAKNIRSNVREL 307 (405)
T ss_pred HHHcCCCC-CHHHHHHHHHhcCCCHHHH
Confidence 83322111 1456777888888766543
No 153
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=55.22 E-value=64 Score=33.43 Aligned_cols=105 Identities=12% Similarity=0.114 Sum_probs=63.5
Q ss_pred HHHHHHHHh----cCCcEEEEEEcCCCch--hhhhccccCCCCCCCcEEEEEeCChHHHhhc-CCCceEEcCCCCHHHHH
Q 042822 20 ASMLYAQLK----KSRKILVILDNVWTEL--HLKDVGIPFGDEHKGCKVLLTTRGRDLLSRM-GSEADVRMDILNEEEAW 92 (775)
Q Consensus 20 ~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~~v~~~~-~~~~~~~l~~L~~~~~~ 92 (775)
++.+.+.+. .+++=++|+|++.... ..+.+...+-...++.-|++|++-..+...+ .-...+.+.+++.++..
T Consensus 109 ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~ 188 (314)
T PRK07399 109 IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLE 188 (314)
T ss_pred HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHH
Confidence 445555553 2566788889987653 3454444443223333344444444444432 33568999999999999
Q ss_pred HHHHHHhCCCCCcchhhHHHHHHHHHhCCCchhHHH
Q 042822 93 RLFEVKLGNDGLIRRMKSTATQIVKQCGGLPIALEP 128 (775)
Q Consensus 93 ~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~ 128 (775)
+.+.+........ .....++..++|.|..+..
T Consensus 189 ~~L~~~~~~~~~~----~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 189 QVLKRLGDEEILN----INFPELLALAQGSPGAAIA 220 (314)
T ss_pred HHHHHhhccccch----hHHHHHHHHcCCCHHHHHH
Confidence 9998765322111 1135788999999976554
No 154
>PRK04195 replication factor C large subunit; Provisional
Probab=55.18 E-value=2.8e+02 Score=30.77 Aligned_cols=99 Identities=13% Similarity=0.054 Sum_probs=60.1
Q ss_pred CcEEEEEEcCCCchh------hhhccccCCCCCCCcEEEEEeCCh-HHHh-h-cCCCceEEcCCCCHHHHHHHHHHHhCC
Q 042822 31 RKILVILDNVWTELH------LKDVGIPFGDEHKGCKVLLTTRGR-DLLS-R-MGSEADVRMDILNEEEAWRLFEVKLGN 101 (775)
Q Consensus 31 kr~LlVlDdv~~~~~------~~~l~~~~~~~~~gs~iivTTR~~-~v~~-~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~ 101 (775)
++-+||+|+++.... +..+...+. . .+..||+|+.+. .... . -.....+++.+++.++....+...+..
T Consensus 98 ~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~-~-~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~ 175 (482)
T PRK04195 98 RRKLILLDEVDGIHGNEDRGGARAILELIK-K-AKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRK 175 (482)
T ss_pred CCeEEEEecCcccccccchhHHHHHHHHHH-c-CCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHH
Confidence 677999999986521 333433332 2 233466666432 1111 1 123457899999999999988887722
Q ss_pred --CCCcchhhHHHHHHHHHhCCCchhHHHHHHHHh
Q 042822 102 --DGLIRRMKSTATQIVKQCGGLPIALEPIAKALR 134 (775)
Q Consensus 102 --~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~ 134 (775)
...+ .+....|++.++|-.-++......+.
T Consensus 176 egi~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a 207 (482)
T PRK04195 176 EGIECD---DEALKEIAERSGGDLRSAINDLQAIA 207 (482)
T ss_pred cCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 2222 35678899999997766654444443
No 155
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=54.54 E-value=1.3e+02 Score=32.38 Aligned_cols=66 Identities=18% Similarity=0.247 Sum_probs=43.6
Q ss_pred EEEEEcCCCch---hhhh-ccccCCC-CCCCcEEEEEeCCh---------HHHhhcCCCceEEcCCCCHHHHHHHHHHHh
Q 042822 34 LVILDNVWTEL---HLKD-VGIPFGD-EHKGCKVLLTTRGR---------DLLSRMGSEADVRMDILNEEEAWRLFEVKL 99 (775)
Q Consensus 34 LlVlDdv~~~~---~~~~-l~~~~~~-~~~gs~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a 99 (775)
++++||++-.. .|+. ++..|.. ...|-.||+|++.. ++...++..-++++++.+.+.....+.+++
T Consensus 178 lllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka 257 (408)
T COG0593 178 LLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKA 257 (408)
T ss_pred eeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHH
Confidence 88899997642 2322 2222211 11233799998542 334445667799999999999999999987
No 156
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=51.26 E-value=73 Score=33.41 Aligned_cols=101 Identities=17% Similarity=0.189 Sum_probs=62.5
Q ss_pred HHHHHHHHHh----cCCcEEEEEEcCCCc--hhhhhccccCCCCCCCcEEEEEeCC-hHHHhh-cCCCceEEcCCCCHHH
Q 042822 19 RASMLYAQLK----KSRKILVILDNVWTE--LHLKDVGIPFGDEHKGCKVLLTTRG-RDLLSR-MGSEADVRMDILNEEE 90 (775)
Q Consensus 19 ~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~-~~v~~~-~~~~~~~~l~~L~~~~ 90 (775)
.++.+.+.+. ++++=.+|+|+++.. +.++.+...+-.-..++.+|.+|.+ ..+... ..-...+.+.+++.++
T Consensus 116 qiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~ 195 (342)
T PRK06964 116 QVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEA 195 (342)
T ss_pred HHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHH
Confidence 3344445443 245557788999876 3466665555555566666555554 555443 2334689999999999
Q ss_pred HHHHHHHHhCCCCCcchhhHHHHHHHHHhCCCchhHHH
Q 042822 91 AWRLFEVKLGNDGLIRRMKSTATQIVKQCGGLPIALEP 128 (775)
Q Consensus 91 ~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~ 128 (775)
..+.+... +. . + ...++..++|.|..+..
T Consensus 196 ~~~~L~~~-~~---~-~----~~~~l~~~~Gsp~~Al~ 224 (342)
T PRK06964 196 AAAWLAAQ-GV---A-D----ADALLAEAGGAPLAALA 224 (342)
T ss_pred HHHHHHHc-CC---C-h----HHHHHHHcCCCHHHHHH
Confidence 98888664 21 1 1 23357788999975543
No 157
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=51.05 E-value=93 Score=36.15 Aligned_cols=106 Identities=17% Similarity=0.160 Sum_probs=64.4
Q ss_pred HHHHHHHHh----cCCcEEEEEEcCCCc--hhhhhccccCCCCCCCcE-EEEEeCChHHHhh-cCCCceEEcCCCCHHHH
Q 042822 20 ASMLYAQLK----KSRKILVILDNVWTE--LHLKDVGIPFGDEHKGCK-VLLTTRGRDLLSR-MGSEADVRMDILNEEEA 91 (775)
Q Consensus 20 ~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~-iivTTR~~~v~~~-~~~~~~~~l~~L~~~~~ 91 (775)
++.+.+.+. .+++-++|+|++... +.++.+...+-....... |++||+...+... ......+++.+++.++.
T Consensus 103 IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI 182 (725)
T PRK07133 103 IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEI 182 (725)
T ss_pred HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHH
Confidence 444555443 246668899999765 345555544443333444 5556555555433 33346899999999999
Q ss_pred HHHHHHHhCCCCCcchhhHHHHHHHHHhCCCchhH
Q 042822 92 WRLFEVKLGNDGLIRRMKSTATQIVKQCGGLPIAL 126 (775)
Q Consensus 92 ~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai 126 (775)
.+.+...+......-+ .+.+..|++.++|-+--+
T Consensus 183 ~~~L~~il~kegI~id-~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 183 VSRLEFILEKENISYE-KNALKLIAKLSSGSLRDA 216 (725)
T ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHH
Confidence 9888876622111111 345778999998866433
No 158
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.92 E-value=73 Score=36.42 Aligned_cols=99 Identities=10% Similarity=0.085 Sum_probs=62.0
Q ss_pred CCcEEEEEEcCCCc--hhhhhccccCCCCCCCcEEEEEeCC-hHHHhh-cCCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTE--LHLKDVGIPFGDEHKGCKVLLTTRG-RDLLSR-MGSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
+++-++|+|++... +..+.+...+......+.+|++|.+ ..+... ......+++++++.++-...+.+.+......
T Consensus 119 ~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~ 198 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN 198 (585)
T ss_pred CCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 46678999999755 3455555444444455666665543 334332 2234578899999999998888877322111
Q ss_pred chhhHHHHHHHHHhCCCchhHHHH
Q 042822 106 RRMKSTATQIVKQCGGLPIALEPI 129 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glPLai~~~ 129 (775)
-+ .+....|++.++|.+..+...
T Consensus 199 i~-~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 199 LE-PGALEAIARAATGSMRDAENL 221 (585)
T ss_pred CC-HHHHHHHHHHcCCCHHHHHHH
Confidence 11 356788999999988655443
No 159
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.81 E-value=55 Score=34.87 Aligned_cols=96 Identities=8% Similarity=0.063 Sum_probs=56.8
Q ss_pred CCcEEEEEEcCCCch--hhhhccccCCCCCCCcEEEEEe-CChHHHhh-cCCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTEL--HLKDVGIPFGDEHKGCKVLLTT-RGRDLLSR-MGSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTT-R~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
+++-++|+|++.... .++.+...+......+.+|++| +...+... ......++..+++.++....+...+......
T Consensus 107 ~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~ 186 (367)
T PRK14970 107 GKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK 186 (367)
T ss_pred CCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCC
Confidence 455689999987543 3555544443333445555555 33333322 2233578999999999998888877222110
Q ss_pred chhhHHHHHHHHHhCCCchhH
Q 042822 106 RRMKSTATQIVKQCGGLPIAL 126 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glPLai 126 (775)
- -.+....+++.++|-+-.+
T Consensus 187 i-~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 187 F-EDDALHIIAQKADGALRDA 206 (367)
T ss_pred C-CHHHHHHHHHhCCCCHHHH
Confidence 0 1356778888888865533
No 160
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=50.64 E-value=80 Score=34.67 Aligned_cols=94 Identities=14% Similarity=0.164 Sum_probs=57.3
Q ss_pred CCcEEEEEEcCCCc--hhhhhccccCCCCCCCcEEEEEe-CChHHHhh-cCCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTE--LHLKDVGIPFGDEHKGCKVLLTT-RGRDLLSR-MGSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTT-R~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
+++-++|+|++... +..+.+...+.+......+|++| +...+.+. ......+++++++.++..+.+...+......
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~ 199 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE 199 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 46678899998754 23444444444434456666655 33333322 2234579999999999988888776321111
Q ss_pred chhhHHHHHHHHHhCCCch
Q 042822 106 RRMKSTATQIVKQCGGLPI 124 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glPL 124 (775)
- -.+.+..|++.++|-+-
T Consensus 200 i-~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 200 T-SREALLPIARAAQGSLR 217 (451)
T ss_pred C-CHHHHHHHHHHcCCCHH
Confidence 1 13567889999998654
No 161
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=50.33 E-value=78 Score=36.09 Aligned_cols=98 Identities=11% Similarity=0.073 Sum_probs=61.7
Q ss_pred CCcEEEEEEcCCCch--hhhhccccCCCCCCCcEEEE-EeCChHHHhhc-CCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTEL--HLKDVGIPFGDEHKGCKVLL-TTRGRDLLSRM-GSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iiv-TTR~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
+++=++|+|++.... ..+.+...+..-...+++|+ ||....+...+ .....+++.+++.++....+.+.+......
T Consensus 131 a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~ 210 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE 210 (598)
T ss_pred CCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 355578999997653 35555555544445566554 44444444332 234579999999999999998877322111
Q ss_pred chhhHHHHHHHHHhCCCchhHHH
Q 042822 106 RRMKSTATQIVKQCGGLPIALEP 128 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glPLai~~ 128 (775)
-+ .+....|++.++|-+.-+..
T Consensus 211 i~-~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 211 VE-DEALALIARAAEGSVRDGLS 232 (598)
T ss_pred CC-HHHHHHHHHHcCCCHHHHHH
Confidence 11 25678889999998865543
No 162
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.21 E-value=72 Score=36.59 Aligned_cols=96 Identities=10% Similarity=0.113 Sum_probs=61.6
Q ss_pred CCcEEEEEEcCCCch--hhhhccccCCCCCCCcEEEE-EeCChHHHhh-cCCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTEL--HLKDVGIPFGDEHKGCKVLL-TTRGRDLLSR-MGSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iiv-TTR~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
+++=++|+|++.... .++.+...+..-...+.+|+ ||+...+.+. ......+++++++.++....+.+.+......
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~ 199 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT 199 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 355578899998653 45656555554445566554 5555555543 2335689999999999999898877322211
Q ss_pred chhhHHHHHHHHHhCCCchhH
Q 042822 106 RRMKSTATQIVKQCGGLPIAL 126 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glPLai 126 (775)
-+ .+.+..|++.++|-.--+
T Consensus 200 i~-~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 200 AE-PEALNVIAQKADGGMRDA 219 (614)
T ss_pred CC-HHHHHHHHHHcCCCHHHH
Confidence 11 245788999999866544
No 163
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.80 E-value=67 Score=35.52 Aligned_cols=96 Identities=9% Similarity=0.083 Sum_probs=61.1
Q ss_pred CCcEEEEEEcCCCch--hhhhccccCCCCCCCcEEEEEe-CChHHHhhc-CCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTEL--HLKDVGIPFGDEHKGCKVLLTT-RGRDLLSRM-GSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTT-R~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
+++=++|+|++.... ..+.+...+......+++|++| ....+...+ .-...+++.+++.++-.+.+.+.+......
T Consensus 115 ~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~ 194 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE 194 (491)
T ss_pred CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC
Confidence 455688999997653 3555555554444556655554 445554432 334679999999999999998887332211
Q ss_pred chhhHHHHHHHHHhCCCchhH
Q 042822 106 RRMKSTATQIVKQCGGLPIAL 126 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glPLai 126 (775)
-+ .+....|++.++|-+-.+
T Consensus 195 i~-~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 195 HD-EESLKLIAENSSGSMRNA 214 (491)
T ss_pred CC-HHHHHHHHHHcCCCHHHH
Confidence 11 345678899998877543
No 164
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=48.20 E-value=0.45 Score=52.09 Aligned_cols=159 Identities=22% Similarity=0.189 Sum_probs=99.2
Q ss_pred CCccEEEcccCCCCCcc--ccChhhhhCCCcccEEEecCCCCC-----CCCcccc----cccCccEEEcCCCCCCCc---
Q 042822 303 PQLELLLLSSKHSSVDV--NIPRSFFTGMRELKVVDLTNMQLF-----SLPSSID----LLLNLRTLCLDHGTLGDI--- 368 (775)
Q Consensus 303 ~~Lr~L~l~~~~~~~~~--~l~~~~~~~l~~L~~L~l~~~~~~-----~lp~~i~----~l~~L~~L~L~~~~l~~p--- 368 (775)
..+++|.+..|.....+ .+...+ ....+++.+|++.|.+. .++..+. ...++++|.+.+|.++.+
T Consensus 144 ~~l~~L~l~~c~l~~~g~~~l~~~L-~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~ 222 (478)
T KOG4308|consen 144 CLLQTLELVSCSLTSEGAAPLAAVL-EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCA 222 (478)
T ss_pred HHHHHHHhhcccccccchHHHHHHH-hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHH
Confidence 45666766666655432 333333 45788999999999874 2334444 477899999999987752
Q ss_pred ---cccccCCc-ccEEEecCCCCc-----ccchhhhcc-CCCCEecccCCccccccch---HHhhccccccEEEcCCCcc
Q 042822 369 ---TIIGELKN-LEILSLIGSDIV-----EFPEELGKL-TKLRLLDLTNCFHLKVIAA---NLIASFTRLEELYMSNCFV 435 (775)
Q Consensus 369 ---~~i~~l~~-L~~L~l~~~~l~-----~lp~~i~~l-~~L~~L~l~~~~~l~~~p~---~~l~~L~~L~~L~l~~~~~ 435 (775)
..+..... +..|++..|.+. .+.+.+..+ ..++++++..|+....-.. ..+..+.++++|.++.|.+
T Consensus 223 ~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 223 LLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred HHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 12444555 667899888655 344456666 7889999999854433222 2256677899999988876
Q ss_pred cceecccCCccccccccccccCCCCCCCEEEEEeeC
Q 042822 436 EWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVEN 471 (775)
Q Consensus 436 ~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~ 471 (775)
... .....++.+.....+..+.+.+++
T Consensus 303 ~~~---------~~~~~~~~l~~~~~~~~~~l~~~~ 329 (478)
T KOG4308|consen 303 TDY---------GVELLLEALERKTPLLHLVLGGTG 329 (478)
T ss_pred ccH---------HHHHHHHHhhhcccchhhhccccC
Confidence 521 122334444555555555665443
No 165
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=47.12 E-value=85 Score=32.56 Aligned_cols=92 Identities=13% Similarity=0.102 Sum_probs=58.0
Q ss_pred CCcEEEEEEcCCCch--hhhhccccCCCCCCCcEEEEEeCC-hHHHhhc-CCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTEL--HLKDVGIPFGDEHKGCKVLLTTRG-RDLLSRM-GSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~-~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
+++=++|+|+++... .-+.+...+-.-..++.+|++|.. ..+...+ .-...+.+.+++.+++.+.+... +. .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~~---~ 187 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQ-GV---S 187 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHc-CC---C
Confidence 466688889998763 233343344333456666666664 4444332 23457899999999988777643 21 1
Q ss_pred chhhHHHHHHHHHhCCCchhHHH
Q 042822 106 RRMKSTATQIVKQCGGLPIALEP 128 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glPLai~~ 128 (775)
...+..++..++|.|+.+..
T Consensus 188 ---~~~a~~~~~l~~G~p~~A~~ 207 (319)
T PRK08769 188 ---ERAAQEALDAARGHPGLAAQ 207 (319)
T ss_pred ---hHHHHHHHHHcCCCHHHHHH
Confidence 12266789999999986644
No 166
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=47.02 E-value=1.1e+02 Score=32.83 Aligned_cols=102 Identities=12% Similarity=0.230 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcCCcEEEEEEcCCCch------------h-hhhccc---cCC--CCCCCcEEEEEeCChHHHhh--c--C
Q 042822 19 RASMLYAQLKKSRKILVILDNVWTEL------------H-LKDVGI---PFG--DEHKGCKVLLTTRGRDLLSR--M--G 76 (775)
Q Consensus 19 ~~~~l~~~l~~~kr~LlVlDdv~~~~------------~-~~~l~~---~~~--~~~~gs~iivTTR~~~v~~~--~--~ 76 (775)
....+.+........+|++||++... + +..+.. .+. ....+.+||.||...+.... . +
T Consensus 212 ~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpg 291 (389)
T PRK03992 212 LVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPG 291 (389)
T ss_pred HHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCc
Confidence 34445555444567899999997531 1 111111 111 12235678888875433221 1 1
Q ss_pred -CCceEEcCCCCHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHhCCC
Q 042822 77 -SEADVRMDILNEEEAWRLFEVKLGNDGLIRRMKSTATQIVKQCGGL 122 (775)
Q Consensus 77 -~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~gl 122 (775)
-...+++++.+.++-.++|+.++.......+. + ...+++.+.|.
T Consensus 292 Rfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~-~-~~~la~~t~g~ 336 (389)
T PRK03992 292 RFDRIIEVPLPDEEGRLEILKIHTRKMNLADDV-D-LEELAELTEGA 336 (389)
T ss_pred cCceEEEECCCCHHHHHHHHHHHhccCCCCCcC-C-HHHHHHHcCCC
Confidence 23579999999999999999887432222111 1 34556666554
No 167
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=46.58 E-value=33 Score=31.36 Aligned_cols=51 Identities=20% Similarity=0.199 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCcEEEEEEcCCCch-----hhhhccccCCCCCCCcEEEEEeCChH
Q 042822 20 ASMLYAQLKKSRKILVILDNVWTEL-----HLKDVGIPFGDEHKGCKVLLTTRGRD 70 (775)
Q Consensus 20 ~~~l~~~l~~~kr~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~iivTTR~~~ 70 (775)
.+..++.+..++-=|+|||++-..- ..+.+...+.....+.-||+|.|+..
T Consensus 84 ~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 84 WAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 3344555554556699999996552 23344444444455678999999863
No 168
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.48 E-value=87 Score=35.86 Aligned_cols=92 Identities=10% Similarity=0.028 Sum_probs=58.6
Q ss_pred CCcEEEEEEcCCCch--hhhhccccCCCCCCCcEEE-EEeCChHHHhh-cCCCceEEcCCCCHHHHHHHHHHHhC--CCC
Q 042822 30 SRKILVILDNVWTEL--HLKDVGIPFGDEHKGCKVL-LTTRGRDLLSR-MGSEADVRMDILNEEEAWRLFEVKLG--NDG 103 (775)
Q Consensus 30 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ii-vTTR~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~--~~~ 103 (775)
+++=++|+|+++... ..+.+...+......+.+| +|++...+.+. ......+++.+++.++....+.+.+. +..
T Consensus 126 ~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~ 205 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ 205 (620)
T ss_pred CCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC
Confidence 455578899987653 3555555554444455554 45454555443 33456899999999998888877662 212
Q ss_pred CcchhhHHHHHHHHHhCCCch
Q 042822 104 LIRRMKSTATQIVKQCGGLPI 124 (775)
Q Consensus 104 ~~~~~~~~~~~i~~~c~glPL 124 (775)
.. .+.+..|++.++|-.-
T Consensus 206 I~---~eal~~La~~s~Gdlr 223 (620)
T PRK14954 206 ID---ADALQLIARKAQGSMR 223 (620)
T ss_pred CC---HHHHHHHHHHhCCCHH
Confidence 22 3557889999999554
No 169
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.22 E-value=1e+02 Score=35.02 Aligned_cols=102 Identities=14% Similarity=0.176 Sum_probs=62.4
Q ss_pred CCcEEEEEEcCCCc--hhhhhccccCCCCCCCcEEE-EEeCChHHHhh-cCCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTE--LHLKDVGIPFGDEHKGCKVL-LTTRGRDLLSR-MGSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ii-vTTR~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
+++=++|+|++... +..+.+...+........+| +||....+... ..-...|+..+++.++..+.+.+.+......
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~ 196 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV 196 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 45668899999765 34555554554444455544 55555555443 2235689999999999988888876321111
Q ss_pred chhhHHHHHHHHHhCCCch-hHHHHHHH
Q 042822 106 RRMKSTATQIVKQCGGLPI-ALEPIAKA 132 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glPL-ai~~~g~~ 132 (775)
-+ .+....|++.++|-+- |+..+-.+
T Consensus 197 i~-~~al~~Ia~~s~GdlR~aln~Ldql 223 (584)
T PRK14952 197 VD-DAVYPLVIRAGGGSPRDTLSVLDQL 223 (584)
T ss_pred CC-HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11 3456778899999764 44444433
No 170
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=46.21 E-value=1.8e+02 Score=31.95 Aligned_cols=115 Identities=18% Similarity=0.144 Sum_probs=65.0
Q ss_pred cEEEEEEcCCCch---hh-hhccccCCC-CCCCcEEEEEeCCh---------HHHhhcCCCceEEcCCCCHHHHHHHHHH
Q 042822 32 KILVILDNVWTEL---HL-KDVGIPFGD-EHKGCKVLLTTRGR---------DLLSRMGSEADVRMDILNEEEAWRLFEV 97 (775)
Q Consensus 32 r~LlVlDdv~~~~---~~-~~l~~~~~~-~~~gs~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~ 97 (775)
.-+||+|||.... .+ +.+...+.. ...|..||+||... .+...+.....+++++.+.++-.+++.+
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~ 291 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKK 291 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHH
Confidence 3488999996531 12 122221110 11244577777643 1223345556899999999999999999
Q ss_pred HhCC--CCCcchhhHHHHHHHHHhCCCchhHH----HHHHH---HhcCCcHHHHHHHHHHh
Q 042822 98 KLGN--DGLIRRMKSTATQIVKQCGGLPIALE----PIAKA---LRNKTESECWKNALHEL 149 (775)
Q Consensus 98 ~a~~--~~~~~~~~~~~~~i~~~c~glPLai~----~~g~~---L~~~~~~~~w~~~l~~l 149 (775)
++.. ...+ .++..-|++.+.|-.-.+. .+..+ ....-+.+..++++..+
T Consensus 292 ~~~~~~~~l~---~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 292 KAEEEGIDLP---DEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHcCCCCC---HHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 9832 2222 3567778888887765432 22211 12223444466666654
No 171
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=44.78 E-value=12 Score=36.54 Aligned_cols=46 Identities=20% Similarity=0.269 Sum_probs=27.9
Q ss_pred CcEEEEEEcCCCch---hhhhccccCCCCCCCcEEEEEeCChHHHhhcC
Q 042822 31 RKILVILDNVWTEL---HLKDVGIPFGDEHKGCKVLLTTRGRDLLSRMG 76 (775)
Q Consensus 31 kr~LlVlDdv~~~~---~~~~l~~~~~~~~~gs~iivTTR~~~v~~~~~ 76 (775)
.-=++|||||...- ....+...+....+.+.+||||-.+.++....
T Consensus 158 ~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~ 206 (220)
T PF02463_consen 158 PSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDAD 206 (220)
T ss_dssp --SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-S
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 44488999998662 23444444444455688999999998877653
No 172
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.66 E-value=65 Score=35.96 Aligned_cols=97 Identities=10% Similarity=0.071 Sum_probs=58.6
Q ss_pred CCcEEEEEEcCCCc--hhhhhccccCCCCCCCcEEEEEeCC-hHHHhh-cCCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTE--LHLKDVGIPFGDEHKGCKVLLTTRG-RDLLSR-MGSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
++.-++|+|+|... +..+.+...+......+++|.+|.+ ..+... ......+++++++.++-.+.+.+.+......
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~ 197 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE 197 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 46668889999875 3455555455444445666655543 333322 2224578899999998887777766222111
Q ss_pred chhhHHHHHHHHHhCCCchhHH
Q 042822 106 RRMKSTATQIVKQCGGLPIALE 127 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glPLai~ 127 (775)
-+ .+....|++.++|-+.-+.
T Consensus 198 ~~-~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 198 FE-NAALDLLARAANGSVRDAL 218 (509)
T ss_pred CC-HHHHHHHHHHcCCcHHHHH
Confidence 11 2446778889998775443
No 173
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=42.50 E-value=19 Score=21.70 Aligned_cols=12 Identities=42% Similarity=0.670 Sum_probs=6.0
Q ss_pred cccEEEecCCCC
Q 042822 331 ELKVVDLTNMQL 342 (775)
Q Consensus 331 ~L~~L~l~~~~~ 342 (775)
+|++|||++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 445555555544
No 174
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=41.75 E-value=97 Score=32.44 Aligned_cols=102 Identities=12% Similarity=0.035 Sum_probs=63.6
Q ss_pred HHHHHHHHHh----cCCcEEEEEEcCCCch--hhhhccccCCCCCCCcEEEEEeCC-hHHHhh-cCCCceEEcCCCCHHH
Q 042822 19 RASMLYAQLK----KSRKILVILDNVWTEL--HLKDVGIPFGDEHKGCKVLLTTRG-RDLLSR-MGSEADVRMDILNEEE 90 (775)
Q Consensus 19 ~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~-~~v~~~-~~~~~~~~l~~L~~~~ 90 (775)
.++.+.+.+. ++++=.+|+|+++.-. ..+.+...+-.-..++.+|.+|.+ ..+... ..-...+.+.+++.++
T Consensus 92 qiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~ 171 (334)
T PRK07993 92 AVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQY 171 (334)
T ss_pred HHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHH
Confidence 3444444443 2566688889998663 345555555444556776666665 445543 2234578999999999
Q ss_pred HHHHHHHHhCCCCCcchhhHHHHHHHHHhCCCchhH
Q 042822 91 AWRLFEVKLGNDGLIRRMKSTATQIVKQCGGLPIAL 126 (775)
Q Consensus 91 ~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai 126 (775)
+.+.+....+ .+ .+.+..++..++|.|...
T Consensus 172 ~~~~L~~~~~---~~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 172 ALTWLSREVT---MS---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred HHHHHHHccC---CC---HHHHHHHHHHcCCCHHHH
Confidence 8887755322 11 123667899999999644
No 175
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.86 E-value=1.8e+02 Score=32.35 Aligned_cols=99 Identities=7% Similarity=0.023 Sum_probs=59.4
Q ss_pred CCcEEEEEEcCCCc--hhhhhccccCCCCCCCcEEEE-EeCChHHHhh-cCCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTE--LHLKDVGIPFGDEHKGCKVLL-TTRGRDLLSR-MGSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiv-TTR~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
+++-++|+|++... +..+.+...+........+|+ ||+...+... ......+.+.+++.++-...+...+......
T Consensus 118 ~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~ 197 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE 197 (486)
T ss_pred CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 46678999999765 234544444443333445554 4444444332 2224578999999999988888877221111
Q ss_pred chhhHHHHHHHHHhCCCchhHHHH
Q 042822 106 RRMKSTATQIVKQCGGLPIALEPI 129 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glPLai~~~ 129 (775)
- -.+....|++.++|.+..+...
T Consensus 198 i-d~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 198 Y-EEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred C-CHHHHHHHHHHcCCCHHHHHHH
Confidence 1 1355677888999976654433
No 176
>CHL00181 cbbX CbbX; Provisional
Probab=40.19 E-value=1.8e+02 Score=29.69 Aligned_cols=69 Identities=9% Similarity=0.049 Sum_probs=43.3
Q ss_pred CcEEEEEEcCCCc-----------hhhhhccccCCCCCCCcEEEEEeCChHHHhhc--------CCCceEEcCCCCHHHH
Q 042822 31 RKILVILDNVWTE-----------LHLKDVGIPFGDEHKGCKVLLTTRGRDLLSRM--------GSEADVRMDILNEEEA 91 (775)
Q Consensus 31 kr~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~iivTTR~~~v~~~~--------~~~~~~~l~~L~~~~~ 91 (775)
..-.|++|++... +.-+.+...+.+...+-+||+++....+.... .....+..++++.+|-
T Consensus 122 ~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el 201 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEEL 201 (287)
T ss_pred cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHH
Confidence 3458899999642 12233333444444556777777654442211 1234789999999999
Q ss_pred HHHHHHHh
Q 042822 92 WRLFEVKL 99 (775)
Q Consensus 92 ~~Lf~~~a 99 (775)
.+++...+
T Consensus 202 ~~I~~~~l 209 (287)
T CHL00181 202 LQIAKIML 209 (287)
T ss_pred HHHHHHHH
Confidence 99988887
No 177
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.36 E-value=1.7e+02 Score=33.58 Aligned_cols=99 Identities=9% Similarity=0.071 Sum_probs=60.3
Q ss_pred CCcEEEEEEcCCCc--hhhhhccccCCCCCCCcEEEEEe-CChHHHhh-cCCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTE--LHLKDVGIPFGDEHKGCKVLLTT-RGRDLLSR-MGSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTT-R~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
+++=++|+|++... +.++.+...+........+|.+| .-..+... ......+++..++.++..+.+.+.+......
T Consensus 120 ~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~ 199 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE 199 (620)
T ss_pred CCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 45558899999865 34666655554433445555444 43344332 2234578888999999888888777322111
Q ss_pred chhhHHHHHHHHHhCCCchhHHHH
Q 042822 106 RRMKSTATQIVKQCGGLPIALEPI 129 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glPLai~~~ 129 (775)
-+ .+....|++.++|-+..+...
T Consensus 200 is-~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 200 IE-PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred CC-HHHHHHHHHHcCCCHHHHHHH
Confidence 11 245788999999987655443
No 178
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=39.08 E-value=2.5e+02 Score=29.08 Aligned_cols=80 Identities=13% Similarity=0.144 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhc-CCcEEEEEEcCCCch------hhhhccccCCCCCCCcEEEEEeCChHHHhhcCC------------
Q 042822 17 HARASMLYAQLKK-SRKILVILDNVWTEL------HLKDVGIPFGDEHKGCKVLLTTRGRDLLSRMGS------------ 77 (775)
Q Consensus 17 ~~~~~~l~~~l~~-~kr~LlVlDdv~~~~------~~~~l~~~~~~~~~gs~iivTTR~~~v~~~~~~------------ 77 (775)
++....+.+.+.+ ++|.+||+||++... .|+.+..-+. .++..+|+..-.+.+......
T Consensus 157 ~~~~~~~~~~l~~~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~--~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~ 234 (325)
T PF07693_consen 157 EELISKIKKKLKESKKRIVIIIDDLDRCSPEEIVELLEAIKLLLD--FPNIIFILAFDPEILEKAIEKNYGEGFDEIDGR 234 (325)
T ss_pred HHHHHHHHHhhhcCCceEEEEEcchhcCCcHHHHHHHHHHHHhcC--CCCeEEEEEecHHHHHHHHHhhcCcccccccHH
Confidence 3356677777753 589999999999752 3555544332 266666666655555443221
Q ss_pred -------CceEEcCCCCHHHHHHHHHHH
Q 042822 78 -------EADVRMDILNEEEAWRLFEVK 98 (775)
Q Consensus 78 -------~~~~~l~~L~~~~~~~Lf~~~ 98 (775)
..++.+++.+..+-.+.|...
T Consensus 235 ~yLeKiiq~~~~lP~~~~~~~~~~~~~~ 262 (325)
T PF07693_consen 235 EYLEKIIQVPFSLPPPSPSDLERYLNEL 262 (325)
T ss_pred HHHHhhcCeEEEeCCCCHHHHHHHHHHH
Confidence 125677777766655555554
No 179
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=38.78 E-value=1.3e+02 Score=34.15 Aligned_cols=97 Identities=12% Similarity=0.105 Sum_probs=60.2
Q ss_pred CcEEEEEEcCCCc--hhhhhccccCCCCCCCcEEEE-EeCChHHHhh-cCCCceEEcCCCCHHHHHHHHHHHhCCC--CC
Q 042822 31 RKILVILDNVWTE--LHLKDVGIPFGDEHKGCKVLL-TTRGRDLLSR-MGSEADVRMDILNEEEAWRLFEVKLGND--GL 104 (775)
Q Consensus 31 kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiv-TTR~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~--~~ 104 (775)
++=++|+|++... +.++.+...+........+|+ ||....+... ......+++.+++.++....+...+... ..
T Consensus 119 ~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I 198 (605)
T PRK05896 119 KYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI 198 (605)
T ss_pred CcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC
Confidence 4446999999764 446655555443334555554 5444444332 2234679999999999998888877221 22
Q ss_pred cchhhHHHHHHHHHhCCCch-hHHHHH
Q 042822 105 IRRMKSTATQIVKQCGGLPI-ALEPIA 130 (775)
Q Consensus 105 ~~~~~~~~~~i~~~c~glPL-ai~~~g 130 (775)
. .+.+..+++.++|-+- |+..+-
T Consensus 199 s---~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 199 E---DNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred C---HHHHHHHHHHcCCcHHHHHHHHH
Confidence 2 3457789999999654 444443
No 180
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=38.68 E-value=4.5e+02 Score=27.94 Aligned_cols=124 Identities=18% Similarity=0.304 Sum_probs=71.3
Q ss_pred hHHHHhCC-CCccccHHHHHHHHHHHHhc-CCcEEEEEEcCCCchh-----hhhccccCCCCCCCcE--EEEEeCChHHH
Q 042822 2 EIAEQIGL-TLDKETEHARASMLYAQLKK-SRKILVILDNVWTELH-----LKDVGIPFGDEHKGCK--VLLTTRGRDLL 72 (775)
Q Consensus 2 ~i~~~l~~-~~~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~~-----~~~l~~~~~~~~~gs~--iivTTR~~~v~ 72 (775)
+|+++++. +..+....+....+.+.+.+ ++.++||||++..... ...|...-... .++ ||.++-+....
T Consensus 92 ~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~ 169 (366)
T COG1474 92 KILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDKFL 169 (366)
T ss_pred HHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHHHH
Confidence 56777753 33456677778888888875 5899999999976532 22222221122 444 44445444433
Q ss_pred hh--------cCCCceEEcCCCCHHHHHHHHHHHhC----CCCCcchhhH-HHHHHHHHhCCCchhHHH
Q 042822 73 SR--------MGSEADVRMDILNEEEAWRLFEVKLG----NDGLIRRMKS-TATQIVKQCGGLPIALEP 128 (775)
Q Consensus 73 ~~--------~~~~~~~~l~~L~~~~~~~Lf~~~a~----~~~~~~~~~~-~~~~i~~~c~glPLai~~ 128 (775)
.. .+.. .+..+|=+.++-...+..++. .....++.-+ ++...++..|-.-.||..
T Consensus 170 ~~ld~rv~s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidi 237 (366)
T COG1474 170 DYLDPRVKSSLGPS-EIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDI 237 (366)
T ss_pred HHhhhhhhhccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHH
Confidence 22 2333 377888999999999999882 2233334333 333344444444444443
No 181
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.44 E-value=74 Score=35.77 Aligned_cols=95 Identities=9% Similarity=0.082 Sum_probs=58.2
Q ss_pred CCcEEEEEEcCCCch--hhhhccccCCCCCCCcEEEEEeCC-hHHHhh-cCCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTEL--HLKDVGIPFGDEHKGCKVLLTTRG-RDLLSR-MGSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
+++-++|+|++.... ..+.+...+......+.+|.+|.+ ..+... ..-...+++++++.++-.+.+.+.+......
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~ 197 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP 197 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 466789999998663 355554455444445666655544 333211 1123578999999999988887766222111
Q ss_pred chhhHHHHHHHHHhCCCchh
Q 042822 106 RRMKSTATQIVKQCGGLPIA 125 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glPLa 125 (775)
. -.+....|++.++|.+--
T Consensus 198 ~-~~~al~~la~~s~Gslr~ 216 (527)
T PRK14969 198 F-DATALQLLARAAAGSMRD 216 (527)
T ss_pred C-CHHHHHHHHHHcCCCHHH
Confidence 1 134567889999997753
No 182
>PRK04132 replication factor C small subunit; Provisional
Probab=37.38 E-value=1.8e+02 Score=34.60 Aligned_cols=98 Identities=13% Similarity=0.079 Sum_probs=62.6
Q ss_pred CcEEEEEEcCCCch--hhhhccccCCCCCCCcEEEEEeCCh-HHHhhc-CCCceEEcCCCCHHHHHHHHHHHhCCCCCcc
Q 042822 31 RKILVILDNVWTEL--HLKDVGIPFGDEHKGCKVLLTTRGR-DLLSRM-GSEADVRMDILNEEEAWRLFEVKLGNDGLIR 106 (775)
Q Consensus 31 kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~ 106 (775)
+.-++|+|+++... ..+.+...+-......++|.+|.+. .+.... .-...+.+.+++.++-.+.+.+.+......-
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i 709 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL 709 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 44799999999774 4555555544434455666655543 333332 2356899999999999888887763221111
Q ss_pred hhhHHHHHHHHHhCCCchhHHHH
Q 042822 107 RMKSTATQIVKQCGGLPIALEPI 129 (775)
Q Consensus 107 ~~~~~~~~i~~~c~glPLai~~~ 129 (775)
-.+....|++.++|-+..+..+
T Consensus 710 -~~e~L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 710 -TEEGLQAILYIAEGDMRRAINI 731 (846)
T ss_pred -CHHHHHHHHHHcCCCHHHHHHH
Confidence 1356789999999988655433
No 183
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=37.24 E-value=12 Score=40.82 Aligned_cols=89 Identities=24% Similarity=0.122 Sum_probs=40.4
Q ss_pred ccccceEEEeccCccccc--cccc-ccccceEEeecccCCcccccccccccccccCcEEEeecCCCccccccCCCcc--c
Q 042822 519 HQSLRMLKLKLNCKTICS--RKLQ-GIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIV--D 593 (775)
Q Consensus 519 ~~~L~~L~l~~~~~~~~~--~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~--~ 593 (775)
.+.+..+.|+++...... +.+. ..|+|+.|+|+++............-+...|++|.+.+++-.+...+..... .
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~i 296 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSAI 296 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHHH
Confidence 455555556554332221 1122 5566777777666322222222222334556666666665433322111111 2
Q ss_pred CCcccccceeeccc
Q 042822 594 CDAFPLLELLSLQN 607 (775)
Q Consensus 594 ~~~~p~L~~L~l~~ 607 (775)
...||+|..|+=..
T Consensus 297 ~~~FPKL~~LDG~e 310 (585)
T KOG3763|consen 297 RELFPKLLRLDGVE 310 (585)
T ss_pred HHhcchheeecCcc
Confidence 34566666655433
No 184
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=35.76 E-value=1.7e+02 Score=29.37 Aligned_cols=68 Identities=9% Similarity=0.102 Sum_probs=39.3
Q ss_pred cEEEEEEcCCCc----------hhhhhccccCCCCCCCcEEEEEeCChHHHh------hc-C-CCceEEcCCCCHHHHHH
Q 042822 32 KILVILDNVWTE----------LHLKDVGIPFGDEHKGCKVLLTTRGRDLLS------RM-G-SEADVRMDILNEEEAWR 93 (775)
Q Consensus 32 r~LlVlDdv~~~----------~~~~~l~~~~~~~~~gs~iivTTR~~~v~~------~~-~-~~~~~~l~~L~~~~~~~ 93 (775)
.-+|++|++... +..+.+...+.+....-.+|+++....... .. . -...+++++++.++-.+
T Consensus 106 ~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~ 185 (261)
T TIGR02881 106 GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELME 185 (261)
T ss_pred CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHH
Confidence 358899999752 123334333333333335555654432211 11 1 12468899999999999
Q ss_pred HHHHHh
Q 042822 94 LFEVKL 99 (775)
Q Consensus 94 Lf~~~a 99 (775)
++.+.+
T Consensus 186 Il~~~~ 191 (261)
T TIGR02881 186 IAERMV 191 (261)
T ss_pred HHHHHH
Confidence 998887
No 185
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=35.32 E-value=2.6e+02 Score=31.70 Aligned_cols=98 Identities=12% Similarity=0.063 Sum_probs=61.1
Q ss_pred CCcEEEEEEcCCCch--hhhhccccCCCCCCCcEEEEEe-CChHHHhh-cCCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTEL--HLKDVGIPFGDEHKGCKVLLTT-RGRDLLSR-MGSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTT-R~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
+++=++|+|++.... .++.+...+........+|.+| ....+.+. ..-...++..+++.++-.+.+...+......
T Consensus 118 ~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~ 197 (563)
T PRK06647 118 SRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK 197 (563)
T ss_pred CCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 466688899997663 4666655555444556655554 44444333 2224578999999999988888877222111
Q ss_pred chhhHHHHHHHHHhCCCchhHHH
Q 042822 106 RRMKSTATQIVKQCGGLPIALEP 128 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glPLai~~ 128 (775)
- -.+....|++.++|-+-.+..
T Consensus 198 i-d~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 198 Y-EDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred C-CHHHHHHHHHHcCCCHHHHHH
Confidence 1 135577788999997754433
No 186
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=34.62 E-value=1.5e+02 Score=32.38 Aligned_cols=92 Identities=12% Similarity=0.155 Sum_probs=53.6
Q ss_pred cEEEEEEcCCCc---hhhh-hccccCCC-CCCCcEEEEEeC-ChH----H----HhhcCCCceEEcCCCCHHHHHHHHHH
Q 042822 32 KILVILDNVWTE---LHLK-DVGIPFGD-EHKGCKVLLTTR-GRD----L----LSRMGSEADVRMDILNEEEAWRLFEV 97 (775)
Q Consensus 32 r~LlVlDdv~~~---~~~~-~l~~~~~~-~~~gs~iivTTR-~~~----v----~~~~~~~~~~~l~~L~~~~~~~Lf~~ 97 (775)
.-+||+||+... ..++ .+...+.. ...|..||+||. ... + ...+.....+++++.+.+.-..++++
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~ 274 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARK 274 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHH
Confidence 448899999743 1121 12212110 112346888874 321 1 12234456889999999999999999
Q ss_pred HhCC--CCCcchhhHHHHHHHHHhCCCchhH
Q 042822 98 KLGN--DGLIRRMKSTATQIVKQCGGLPIAL 126 (775)
Q Consensus 98 ~a~~--~~~~~~~~~~~~~i~~~c~glPLai 126 (775)
++.. ...+ .++..-|++.+.|.--++
T Consensus 275 ~~~~~~~~l~---~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 275 MLEIEHGELP---EEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHhcCCCCC---HHHHHHHHhccccCHHHH
Confidence 8832 2222 356777777777654433
No 187
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=33.70 E-value=3e+02 Score=29.94 Aligned_cols=105 Identities=10% Similarity=0.148 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhcCC-cEEEEEEcCCCchh--hhhccccCC-CCCCCcEEEEEeCChH------HHhhc-----CCCceE
Q 042822 17 HARASMLYAQLKKSR-KILVILDNVWTELH--LKDVGIPFG-DEHKGCKVLLTTRGRD------LLSRM-----GSEADV 81 (775)
Q Consensus 17 ~~~~~~l~~~l~~~k-r~LlVlDdv~~~~~--~~~l~~~~~-~~~~gs~iivTTR~~~------v~~~~-----~~~~~~ 81 (775)
.+....+.++.++.+ -+++|+|.++.... -..+-..|- +.-++||+|..---.. ..... -.....
T Consensus 241 ~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l 320 (529)
T KOG2227|consen 241 MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLL 320 (529)
T ss_pred HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCcee
Confidence 566777888887544 68999999976521 111222222 2235667665432211 11111 123567
Q ss_pred EcCCCCHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHhCC
Q 042822 82 RMDILNEEEAWRLFEVKLGNDGLIRRMKSTATQIVKQCGG 121 (775)
Q Consensus 82 ~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~g 121 (775)
..+|-+.++-.+.|..+.........+....+.+++||-|
T Consensus 321 ~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa 360 (529)
T KOG2227|consen 321 VFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAA 360 (529)
T ss_pred eecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhcc
Confidence 8889999999999999884433333333344444555543
No 188
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=32.67 E-value=2.2e+02 Score=31.51 Aligned_cols=103 Identities=18% Similarity=0.242 Sum_probs=62.6
Q ss_pred cHHHHHHHHHHHHh---cCCcEEEEEEcCCCchhhhhccccC---------------CCCCCCcEEEEEeCChHHHhhcC
Q 042822 15 TEHARASMLYAQLK---KSRKILVILDNVWTELHLKDVGIPF---------------GDEHKGCKVLLTTRGRDLLSRMG 76 (775)
Q Consensus 15 ~~~~~~~~l~~~l~---~~kr~LlVlDdv~~~~~~~~l~~~~---------------~~~~~gs~iivTTR~~~v~~~~~ 76 (775)
++......+.+.+. ++.=-.||+||+...-+|-.|...| |+.+..=-|+-||-...|.+.|+
T Consensus 579 sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~ 658 (744)
T KOG0741|consen 579 SESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMG 658 (744)
T ss_pred cHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcC
Confidence 44444445555543 2455689999998877775444333 33333444777888888888876
Q ss_pred C----CceEEcCCCCH-HHHHHHHHHHhCCCCCcchhhHHHHHHHHHh
Q 042822 77 S----EADVRMDILNE-EEAWRLFEVKLGNDGLIRRMKSTATQIVKQC 119 (775)
Q Consensus 77 ~----~~~~~l~~L~~-~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c 119 (775)
- ...|+|+.++. ++..+.++..- .-.+.+.+.++++...+|
T Consensus 659 i~~~F~~~i~Vpnl~~~~~~~~vl~~~n--~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 659 ILDCFSSTIHVPNLTTGEQLLEVLEELN--IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred HHHhhhheeecCccCchHHHHHHHHHcc--CCCcchhHHHHHHHhccc
Confidence 2 34789999987 66666665532 111233445566666666
No 189
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=32.63 E-value=78 Score=34.67 Aligned_cols=89 Identities=10% Similarity=0.120 Sum_probs=51.0
Q ss_pred CcEEEEEEcCCCchh--h--hhccccCCC-CCCCcEEEEEeCCh---------HHHhhcCCCceEEcCCCCHHHHHHHHH
Q 042822 31 RKILVILDNVWTELH--L--KDVGIPFGD-EHKGCKVLLTTRGR---------DLLSRMGSEADVRMDILNEEEAWRLFE 96 (775)
Q Consensus 31 kr~LlVlDdv~~~~~--~--~~l~~~~~~-~~~gs~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~ 96 (775)
+.-++++||+..... | +.+...+.. ...|..||+||... .+...+.....+.+++++.++-..++.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 344888899976421 1 112222110 01345688888542 222334556789999999999999999
Q ss_pred HHhCCC--CCcchhhHHHHHHHHHhCCC
Q 042822 97 VKLGND--GLIRRMKSTATQIVKQCGGL 122 (775)
Q Consensus 97 ~~a~~~--~~~~~~~~~~~~i~~~c~gl 122 (775)
+++... ..+ .++..-|++.+.|.
T Consensus 282 ~k~~~~~~~l~---~evl~~la~~~~~d 306 (445)
T PRK12422 282 RKAEALSIRIE---ETALDFLIEALSSN 306 (445)
T ss_pred HHHHHcCCCCC---HHHHHHHHHhcCCC
Confidence 988322 222 24455566666543
No 190
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=32.22 E-value=1.1e+02 Score=28.21 Aligned_cols=96 Identities=18% Similarity=0.219 Sum_probs=47.3
Q ss_pred CCcEEEEEEcC------CCchhhhhccccCCCCCCCcEEEEEeC-ChH----HHhhcC-CCceEEcCCCCHHHHHHHHHH
Q 042822 30 SRKILVILDNV------WTELHLKDVGIPFGDEHKGCKVLLTTR-GRD----LLSRMG-SEADVRMDILNEEEAWRLFEV 97 (775)
Q Consensus 30 ~kr~LlVlDdv------~~~~~~~~l~~~~~~~~~gs~iivTTR-~~~----v~~~~~-~~~~~~l~~L~~~~~~~Lf~~ 97 (775)
+.+=+||+.+. +....++.+...+.+...++.+|+.+. ..+ ..+... ....+...+++..+.......
T Consensus 56 ~~~klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~ 135 (172)
T PF06144_consen 56 GDKKLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKE 135 (172)
T ss_dssp SSEEEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHH
T ss_pred CCCeEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHH
Confidence 35556666666 334567777777766667777777777 221 122233 234566667777777776666
Q ss_pred HhCCCCCcchhhHHHHHHHHHhCCCchhH
Q 042822 98 KLGNDGLIRRMKSTATQIVKQCGGLPIAL 126 (775)
Q Consensus 98 ~a~~~~~~~~~~~~~~~i~~~c~glPLai 126 (775)
.+......- -.+.++.++++.+|.+.++
T Consensus 136 ~~~~~g~~i-~~~a~~~L~~~~~~d~~~l 163 (172)
T PF06144_consen 136 RAKKNGLKI-DPDAAQYLIERVGNDLSLL 163 (172)
T ss_dssp HHHHTT-EE--HHHHHHHHHHHTT-HHHH
T ss_pred HHHHcCCCC-CHHHHHHHHHHhChHHHHH
Confidence 662111111 1345666677777666554
No 191
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=31.13 E-value=2.9e+02 Score=31.35 Aligned_cols=96 Identities=10% Similarity=0.094 Sum_probs=58.2
Q ss_pred CCcEEEEEEcCCCc--hhhhhccccCCCCCCCcEEE-EEeCChHHHhh-cCCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTE--LHLKDVGIPFGDEHKGCKVL-LTTRGRDLLSR-MGSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ii-vTTR~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
+++-++|+|++... ..++.+...+........+| +||....+... ......++..+++.++..+.+...+......
T Consensus 118 ~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~ 197 (559)
T PRK05563 118 AKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIE 197 (559)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCC
Confidence 46668889999865 34555554444333344444 45544444332 2234578899999999998888877322111
Q ss_pred chhhHHHHHHHHHhCCCchhH
Q 042822 106 RRMKSTATQIVKQCGGLPIAL 126 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glPLai 126 (775)
-+ .+....|++.++|-+..+
T Consensus 198 i~-~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 198 YE-DEALRLIARAAEGGMRDA 217 (559)
T ss_pred CC-HHHHHHHHHHcCCCHHHH
Confidence 11 355777888888876544
No 192
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=30.82 E-value=3.5e+02 Score=30.20 Aligned_cols=101 Identities=16% Similarity=0.228 Sum_probs=55.4
Q ss_pred HHHHHHHHhcCCcEEEEEEcCCCch------------hhh----hccccCC--CCCCCcEEEEEeCChHHHh-h----cC
Q 042822 20 ASMLYAQLKKSRKILVILDNVWTEL------------HLK----DVGIPFG--DEHKGCKVLLTTRGRDLLS-R----MG 76 (775)
Q Consensus 20 ~~~l~~~l~~~kr~LlVlDdv~~~~------------~~~----~l~~~~~--~~~~gs~iivTTR~~~v~~-~----~~ 76 (775)
...+.+..+.....+|++||++... .+. .+...+. ....+-.||.||....... . ..
T Consensus 136 l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gR 215 (495)
T TIGR01241 136 VRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGR 215 (495)
T ss_pred HHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCc
Confidence 3444444444567899999996531 111 1111111 1233456777776543211 1 12
Q ss_pred CCceEEcCCCCHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHhCCC
Q 042822 77 SEADVRMDILNEEEAWRLFEVKLGNDGLIRRMKSTATQIVKQCGGL 122 (775)
Q Consensus 77 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~gl 122 (775)
-...+.++..+.++-.++|..+........+ .-...+++.+.|.
T Consensus 216 fd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~--~~l~~la~~t~G~ 259 (495)
T TIGR01241 216 FDRQVVVDLPDIKGREEILKVHAKNKKLAPD--VDLKAVARRTPGF 259 (495)
T ss_pred ceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc--hhHHHHHHhCCCC
Confidence 3457889999999999999888743222111 1134677777764
No 193
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.89 E-value=1.1e+02 Score=34.97 Aligned_cols=109 Identities=12% Similarity=0.124 Sum_probs=63.0
Q ss_pred HHHHHHHHh----cCCcEEEEEEcCCCch--hhhhccccCCCCCCCcEEE-EEeCChHHHhhc-CCCceEEcCCCCHHHH
Q 042822 20 ASMLYAQLK----KSRKILVILDNVWTEL--HLKDVGIPFGDEHKGCKVL-LTTRGRDLLSRM-GSEADVRMDILNEEEA 91 (775)
Q Consensus 20 ~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ii-vTTR~~~v~~~~-~~~~~~~l~~L~~~~~ 91 (775)
++.+++.+. .+++=++|+|+|.... ..+.+...+-.......+| +||....+...+ .....+++.+++.++.
T Consensus 104 ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i 183 (576)
T PRK14965 104 IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKI 183 (576)
T ss_pred HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHH
Confidence 444555443 1355578899997653 3444544443333445555 555555555432 2345788999999998
Q ss_pred HHHHHHHhCCCCCcchhhHHHHHHHHHhCCCc-hhHHHH
Q 042822 92 WRLFEVKLGNDGLIRRMKSTATQIVKQCGGLP-IALEPI 129 (775)
Q Consensus 92 ~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~ 129 (775)
...+...+......-+ .+....|++.++|-. .|+..+
T Consensus 184 ~~~L~~i~~~egi~i~-~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 184 VDRLRYIADQEGISIS-DAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHHHHHHHHhCCCCC-HHHHHHHHHHcCCCHHHHHHHH
Confidence 8888776632211111 345677888888865 444443
No 194
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=28.47 E-value=5.6e+02 Score=25.55 Aligned_cols=113 Identities=18% Similarity=0.251 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhcCCc-EEEEEEcCCCch--hhhhccc--cCC-CCCCCcEEEEEeCCh-------HHHhhcC-CCce-EE
Q 042822 18 ARASMLYAQLKKSRK-ILVILDNVWTEL--HLKDVGI--PFG-DEHKGCKVLLTTRGR-------DLLSRMG-SEAD-VR 82 (775)
Q Consensus 18 ~~~~~l~~~l~~~kr-~LlVlDdv~~~~--~~~~l~~--~~~-~~~~gs~iivTTR~~-------~v~~~~~-~~~~-~~ 82 (775)
+....|..-.+++|| ..+++||..+.. ..+.++- ..- ++.+-=+|+..-.-+ .+....+ -... |+
T Consensus 117 ~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~ 196 (269)
T COG3267 117 QIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIE 196 (269)
T ss_pred HHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEe
Confidence 344455555666888 999999998763 2322211 111 111111233332211 1111111 1223 99
Q ss_pred cCCCCHHHHHHHHHHHhCCCCCcch--hhHHHHHHHHHhCCCchhHHHHH
Q 042822 83 MDILNEEEAWRLFEVKLGNDGLIRR--MKSTATQIVKQCGGLPIALEPIA 130 (775)
Q Consensus 83 l~~L~~~~~~~Lf~~~a~~~~~~~~--~~~~~~~i~~~c~glPLai~~~g 130 (775)
+.|++.++....++.+.+....+++ -.+....|..+..|.|.+|.-++
T Consensus 197 l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 197 LPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred cCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHH
Confidence 9999999888888887722221111 14567788889999999986544
No 195
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=28.39 E-value=2.7e+02 Score=28.38 Aligned_cols=94 Identities=18% Similarity=0.144 Sum_probs=57.0
Q ss_pred CCcEEEEEEcCCCc---hhhhhccccCCCCCCCcEEEEEeCChH-------HHhhcCCCceEEcCCCCHHHHHHHHHHHh
Q 042822 30 SRKILVILDNVWTE---LHLKDVGIPFGDEHKGCKVLLTTRGRD-------LLSRMGSEADVRMDILNEEEAWRLFEVKL 99 (775)
Q Consensus 30 ~kr~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~iivTTR~~~-------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a 99 (775)
+++-++|++++... ..|+.+...+.....+..+|+++-..+ ..+.......+...+++..+-.......+
T Consensus 45 ~~~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~~~~~~~~~~~i~~~~ 124 (302)
T TIGR01128 45 SERRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECKTPKEQELPRWIQARL 124 (302)
T ss_pred cCCeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEecCCCHHHHHHHHHHHH
Confidence 46777889998764 346666655555555666676664211 12111244567778888888888887776
Q ss_pred CC--CCCcchhhHHHHHHHHHhCCCchhH
Q 042822 100 GN--DGLIRRMKSTATQIVKQCGGLPIAL 126 (775)
Q Consensus 100 ~~--~~~~~~~~~~~~~i~~~c~glPLai 126 (775)
.. .... .+.+..+++.++|-..++
T Consensus 125 ~~~g~~i~---~~a~~~l~~~~~~d~~~l 150 (302)
T TIGR01128 125 KKLGLRID---PDAVQLLAELVEGNLLAI 150 (302)
T ss_pred HHcCCCCC---HHHHHHHHHHhCcHHHHH
Confidence 22 1121 345667777777755544
No 196
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=27.70 E-value=19 Score=39.40 Aligned_cols=87 Identities=15% Similarity=-0.015 Sum_probs=50.1
Q ss_pred ccccccceEEEecCCCCCCccccccccccccccccccccccccceEEEeccCc-cccccccc--ccccceEEeecccCCc
Q 042822 480 FVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNCK-TICSRKLQ--GIRKVEYLCLDKFQGV 556 (775)
Q Consensus 480 ~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~l~--~l~~L~~L~l~~~~~~ 556 (775)
..+.+.++.+..+....+..+.. .....++|+.|+|+++.. .....++. ....|+.|.+.|++.+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~ss------------lsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSS------------LSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhH------------HHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 44666666666666555543322 122378888899987622 22223333 4566888888888877
Q ss_pred ccccccc-----cccccccCcEEEeec
Q 042822 557 KNILFEL-----DTQGFSQLKHLLVQN 578 (775)
Q Consensus 557 ~~~~~~~-----~~~~l~~L~~L~l~~ 578 (775)
++..... ....||+|..|+=..
T Consensus 284 ~tf~~~s~yv~~i~~~FPKL~~LDG~e 310 (585)
T KOG3763|consen 284 TTFSDRSEYVSAIRELFPKLLRLDGVE 310 (585)
T ss_pred cchhhhHHHHHHHHHhcchheeecCcc
Confidence 6543210 123488887776433
No 197
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=26.91 E-value=1.7e+02 Score=30.31 Aligned_cols=67 Identities=10% Similarity=0.176 Sum_probs=38.1
Q ss_pred CcEEEEEEcCCCc--hhh-hhccccCCCCCCCcEEEEEeCChHH-Hhh-cCCCceEEcCCCCHHHHHHHHHH
Q 042822 31 RKILVILDNVWTE--LHL-KDVGIPFGDEHKGCKVLLTTRGRDL-LSR-MGSEADVRMDILNEEEAWRLFEV 97 (775)
Q Consensus 31 kr~LlVlDdv~~~--~~~-~~l~~~~~~~~~gs~iivTTR~~~v-~~~-~~~~~~~~l~~L~~~~~~~Lf~~ 97 (775)
.+-+||+||+... .+. +.+...+.....+.++|+||...+. .+. ......+.++..+.++..+++..
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 4557889999865 222 2233223333456788888865421 111 12224677777788877766554
No 198
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=25.81 E-value=94 Score=28.96 Aligned_cols=50 Identities=20% Similarity=0.128 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCcEEEEEEcCCCch-----hhhhccccCCCCCCCcEEEEEeCCh
Q 042822 20 ASMLYAQLKKSRKILVILDNVWTEL-----HLKDVGIPFGDEHKGCKVLLTTRGR 69 (775)
Q Consensus 20 ~~~l~~~l~~~kr~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~iivTTR~~ 69 (775)
.+..++.+..++--|||||.+-..- +.+.+...+.....+.-||+|-|+.
T Consensus 104 ~~~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~ 158 (178)
T PRK07414 104 WQYTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEM 158 (178)
T ss_pred HHHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCC
Confidence 4455666665667799999996543 2334444444455677899999985
No 199
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=24.68 E-value=95 Score=27.08 Aligned_cols=40 Identities=15% Similarity=0.127 Sum_probs=24.4
Q ss_pred CCcEEEEEEcCCCc-----hhhhhccccCCCC---CCCcEEEEEeCCh
Q 042822 30 SRKILVILDNVWTE-----LHLKDVGIPFGDE---HKGCKVLLTTRGR 69 (775)
Q Consensus 30 ~kr~LlVlDdv~~~-----~~~~~l~~~~~~~---~~gs~iivTTR~~ 69 (775)
.++.+||+||++.. ..+..+...+... ..+.+||+||...
T Consensus 83 ~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 83 AKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred CCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 47889999999964 1222222222221 3577888888865
No 200
>CHL00176 ftsH cell division protein; Validated
Probab=22.78 E-value=5.4e+02 Score=29.77 Aligned_cols=100 Identities=17% Similarity=0.272 Sum_probs=58.2
Q ss_pred HHHHHHHHhcCCcEEEEEEcCCCch------------h----hhhccccCC--CCCCCcEEEEEeCChHHHhh--c---C
Q 042822 20 ASMLYAQLKKSRKILVILDNVWTEL------------H----LKDVGIPFG--DEHKGCKVLLTTRGRDLLSR--M---G 76 (775)
Q Consensus 20 ~~~l~~~l~~~kr~LlVlDdv~~~~------------~----~~~l~~~~~--~~~~gs~iivTTR~~~v~~~--~---~ 76 (775)
...+.+..+++...+|++||++... . +..+...+. ....+-.||.||...+.... . .
T Consensus 264 vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGR 343 (638)
T CHL00176 264 VRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGR 343 (638)
T ss_pred HHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhcccc
Confidence 3444455554678999999996431 1 222222221 12345677778776543321 1 1
Q ss_pred CCceEEcCCCCHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHhCC
Q 042822 77 SEADVRMDILNEEEAWRLFEVKLGNDGLIRRMKSTATQIVKQCGG 121 (775)
Q Consensus 77 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~g 121 (775)
-...+.++..+.++-.++++.++......+ ......+++.+.|
T Consensus 344 Fd~~I~v~lPd~~~R~~IL~~~l~~~~~~~--d~~l~~lA~~t~G 386 (638)
T CHL00176 344 FDRQITVSLPDREGRLDILKVHARNKKLSP--DVSLELIARRTPG 386 (638)
T ss_pred CceEEEECCCCHHHHHHHHHHHHhhcccch--hHHHHHHHhcCCC
Confidence 235788899999999999998884422211 1234567777776
No 201
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=22.67 E-value=1.4e+02 Score=28.35 Aligned_cols=51 Identities=22% Similarity=0.168 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCCcEEEEEEcCCCchh-----hhhccccCCCCCCCcEEEEEeCCh
Q 042822 19 RASMLYAQLKKSRKILVILDNVWTELH-----LKDVGIPFGDEHKGCKVLLTTRGR 69 (775)
Q Consensus 19 ~~~~l~~~l~~~kr~LlVlDdv~~~~~-----~~~l~~~~~~~~~gs~iivTTR~~ 69 (775)
.....++.+..++-=++|||.+-..-. .+.+...+.....+..||+|-|+.
T Consensus 103 ~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 103 GWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 344556666645667999999965432 334444444455677899999986
No 202
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=22.63 E-value=3.6e+02 Score=29.06 Aligned_cols=103 Identities=11% Similarity=0.201 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCCcEEEEEEcCCCch------------hh----hhccccCC--CCCCCcEEEEEeCChHHHhh--c---
Q 042822 19 RASMLYAQLKKSRKILVILDNVWTEL------------HL----KDVGIPFG--DEHKGCKVLLTTRGRDLLSR--M--- 75 (775)
Q Consensus 19 ~~~~l~~~l~~~kr~LlVlDdv~~~~------------~~----~~l~~~~~--~~~~gs~iivTTR~~~v~~~--~--- 75 (775)
....+.+..+.....+|++|+++... .. ..+...+. ....+-.||+||...+.... .
T Consensus 226 ~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~G 305 (398)
T PTZ00454 226 MVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPG 305 (398)
T ss_pred HHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCC
Confidence 34455555555678999999986420 11 11111111 12345678888876543321 1
Q ss_pred CCCceEEcCCCCHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHhCCCc
Q 042822 76 GSEADVRMDILNEEEAWRLFEVKLGNDGLIRRMKSTATQIVKQCGGLP 123 (775)
Q Consensus 76 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glP 123 (775)
.-...++++..+.++..++|..+.......++. + ..++++...|.-
T Consensus 306 Rfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dv-d-~~~la~~t~g~s 351 (398)
T PTZ00454 306 RLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEV-D-LEDFVSRPEKIS 351 (398)
T ss_pred cccEEEEeCCcCHHHHHHHHHHHHhcCCCCccc-C-HHHHHHHcCCCC
Confidence 224578999999999999998776332211111 1 345556665553
No 203
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=20.76 E-value=1.2e+02 Score=28.28 Aligned_cols=51 Identities=22% Similarity=0.210 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCCcEEEEEEcCCCchh-----hhhccccCCCCCCCcEEEEEeCCh
Q 042822 19 RASMLYAQLKKSRKILVILDNVWTELH-----LKDVGIPFGDEHKGCKVLLTTRGR 69 (775)
Q Consensus 19 ~~~~l~~~l~~~kr~LlVlDdv~~~~~-----~~~l~~~~~~~~~gs~iivTTR~~ 69 (775)
.....++.+..++-=++|||.+-..-. .+.+...+.....+..||+|-|+.
T Consensus 85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 85 AWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 344556666645666999999964432 233444444455667899999986
No 204
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=20.28 E-value=3.7e+02 Score=28.06 Aligned_cols=68 Identities=15% Similarity=0.144 Sum_probs=44.2
Q ss_pred CCcEEEEEEcCCCch--hhhhccccCCCCCCCcEEEEEeCCh-HHHhhc-CCCceEEcCCCCHHHHHHHHHH
Q 042822 30 SRKILVILDNVWTEL--HLKDVGIPFGDEHKGCKVLLTTRGR-DLLSRM-GSEADVRMDILNEEEAWRLFEV 97 (775)
Q Consensus 30 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~ 97 (775)
+++=.+|+|++.... ..+.+...+.....++.+|.+|.+. .+...+ .-...+++.+++.++..+.+..
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 444567889987653 3455555555555677777777654 333332 2356899999999998777754
Done!