Query 042822
Match_columns 775
No_of_seqs 526 out of 4339
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 17:15:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042822.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042822hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.7E-34 5.7E-39 323.6 12.3 240 2-261 206-472 (549)
2 3vq2_A TLR4, TOLL-like recepto 100.0 9E-30 3.1E-34 291.8 34.8 457 264-775 16-552 (606)
3 3rgz_A Protein brassinosteroid 100.0 3.7E-30 1.3E-34 301.7 21.6 444 280-775 199-711 (768)
4 3t6q_A CD180 antigen; protein- 100.0 1.1E-28 3.8E-33 282.7 32.5 461 267-775 20-554 (606)
5 2z63_A TOLL-like receptor 4, v 100.0 1.1E-28 3.7E-33 280.8 32.0 388 266-700 14-480 (570)
6 3vq2_A TLR4, TOLL-like recepto 100.0 3.7E-29 1.3E-33 286.7 27.5 452 284-775 14-528 (606)
7 3rgz_A Protein brassinosteroid 100.0 2.7E-29 9.2E-34 294.4 25.6 420 278-763 220-723 (768)
8 4ecn_A Leucine-rich repeat pro 100.0 8.5E-29 2.9E-33 287.7 23.0 378 281-709 323-824 (876)
9 3t6q_A CD180 antigen; protein- 100.0 6.6E-28 2.2E-32 276.3 28.5 458 284-775 15-530 (606)
10 2z81_A CD282 antigen, TOLL-lik 100.0 5.1E-28 1.8E-32 273.8 21.2 430 280-775 25-504 (549)
11 4eco_A Uncharacterized protein 100.0 5.8E-28 2E-32 276.5 21.0 378 281-709 81-584 (636)
12 1ziw_A TOLL-like receptor 3; i 100.0 2.4E-26 8.1E-31 267.0 32.2 465 266-775 11-567 (680)
13 1o6v_A Internalin A; bacterial 100.0 9.7E-27 3.3E-31 256.9 26.4 348 279-707 44-391 (466)
14 4eco_A Uncharacterized protein 99.9 1.8E-27 6.2E-32 272.4 20.2 354 296-707 198-603 (636)
15 1ziw_A TOLL-like receptor 3; i 99.9 4.2E-26 1.4E-30 264.9 30.4 146 279-428 47-200 (680)
16 4ecn_A Leucine-rich repeat pro 99.9 3.7E-27 1.3E-31 274.0 21.2 357 292-707 436-843 (876)
17 3j0a_A TOLL-like receptor 5; m 99.9 6.3E-26 2.2E-30 268.6 31.3 172 264-440 9-191 (844)
18 2z63_A TOLL-like receptor 4, v 99.9 2.8E-26 9.5E-31 261.0 26.6 447 285-775 11-525 (570)
19 2z7x_B TOLL-like receptor 1, v 99.9 3.1E-26 1.1E-30 257.2 26.2 153 519-701 323-479 (520)
20 2z7x_B TOLL-like receptor 1, v 99.9 1.3E-26 4.5E-31 260.3 21.7 142 284-435 3-150 (520)
21 2z81_A CD282 antigen, TOLL-lik 99.9 4.7E-26 1.6E-30 257.7 24.9 386 278-708 47-468 (549)
22 4fmz_A Internalin; leucine ric 99.9 7.7E-26 2.6E-30 240.0 24.0 148 279-435 42-189 (347)
23 1o6v_A Internalin A; bacterial 99.9 2.9E-25 9.8E-30 245.2 27.9 331 269-662 56-386 (466)
24 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.5E-25 1.5E-29 249.8 28.1 143 283-435 33-181 (562)
25 1vt4_I APAF-1 related killer D 99.9 1.4E-26 4.7E-31 261.5 14.8 197 17-253 228-436 (1221)
26 3sfz_A APAF-1, apoptotic pepti 99.9 4.8E-26 1.6E-30 283.4 21.4 234 3-260 202-452 (1249)
27 3j0a_A TOLL-like receptor 5; m 99.9 8.2E-25 2.8E-29 259.1 30.5 344 284-662 7-392 (844)
28 3o6n_A APL1; leucine-rich repe 99.9 1.4E-25 4.8E-30 241.9 20.4 304 300-700 42-349 (390)
29 4fmz_A Internalin; leucine ric 99.9 8.3E-25 2.8E-29 232.0 23.9 304 300-701 41-344 (347)
30 4g8a_A TOLL-like receptor 4; l 99.9 4E-24 1.4E-28 246.6 31.0 166 267-437 39-215 (635)
31 3v47_A TOLL-like receptor 5B a 99.9 7.8E-25 2.7E-29 241.5 22.1 372 266-661 17-405 (455)
32 3v47_A TOLL-like receptor 5B a 99.9 1.1E-24 3.7E-29 240.4 22.4 361 285-701 14-406 (455)
33 3bz5_A Internalin-J, INLJ; leu 99.9 2.9E-24 9.9E-29 235.0 24.3 310 279-700 40-349 (457)
34 3oja_B Anopheles plasmodium-re 99.9 7.8E-25 2.7E-29 249.2 20.5 304 300-661 48-355 (597)
35 3o6n_A APL1; leucine-rich repe 99.9 6.3E-24 2.2E-28 228.9 22.5 303 278-662 42-350 (390)
36 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.3E-23 1.5E-27 233.5 28.9 148 301-472 29-181 (562)
37 2id5_A Lingo-1, leucine rich r 99.9 1.7E-23 5.9E-28 232.0 23.4 172 286-475 16-191 (477)
38 3bz5_A Internalin-J, INLJ; leu 99.9 2E-23 6.9E-28 228.3 23.2 264 301-668 40-303 (457)
39 3oja_B Anopheles plasmodium-re 99.9 3.8E-23 1.3E-27 235.3 21.9 301 279-636 49-356 (597)
40 1jl5_A Outer protein YOPM; leu 99.9 3.5E-23 1.2E-27 226.3 19.0 336 280-700 10-367 (454)
41 1z6t_A APAF-1, apoptotic prote 99.9 8.3E-23 2.8E-27 232.6 22.3 221 13-257 217-449 (591)
42 2id5_A Lingo-1, leucine rich r 99.9 3E-22 1E-26 222.1 26.1 210 266-493 18-235 (477)
43 1jl5_A Outer protein YOPM; leu 99.9 1.3E-21 4.5E-26 213.7 25.8 177 280-492 90-267 (454)
44 4g8a_A TOLL-like receptor 4; l 99.9 9.3E-22 3.2E-26 226.8 23.7 145 290-440 40-190 (635)
45 2ft3_A Biglycan; proteoglycan, 99.9 9E-22 3.1E-26 207.0 21.0 168 304-493 34-204 (332)
46 1ogq_A PGIP-2, polygalacturona 99.9 2.7E-22 9.1E-27 208.6 14.0 174 281-472 50-233 (313)
47 1xku_A Decorin; proteoglycan, 99.9 4.5E-21 1.5E-25 201.5 22.8 154 304-477 32-188 (330)
48 4fcg_A Uncharacterized protein 99.9 1.5E-21 5.1E-26 204.2 18.5 230 328-659 79-309 (328)
49 4fcg_A Uncharacterized protein 99.9 2E-21 6.9E-26 203.2 18.7 172 281-471 81-264 (328)
50 2ft3_A Biglycan; proteoglycan, 99.9 9E-21 3.1E-25 199.3 19.9 291 282-636 34-331 (332)
51 1ogq_A PGIP-2, polygalacturona 99.9 1.8E-21 6.3E-26 202.3 14.3 223 303-579 50-278 (313)
52 1xku_A Decorin; proteoglycan, 99.9 4.2E-20 1.4E-24 194.1 23.1 291 282-635 32-329 (330)
53 2z80_A TOLL-like receptor 2, v 99.8 2E-20 6.8E-25 198.5 16.6 265 286-580 36-312 (353)
54 3g06_A SSPH2 (leucine-rich rep 99.8 3.3E-19 1.1E-23 200.6 24.0 157 282-476 41-197 (622)
55 3g06_A SSPH2 (leucine-rich rep 99.8 4.4E-19 1.5E-23 199.6 24.3 255 304-662 41-295 (622)
56 2z66_A Variable lymphocyte rec 99.8 6E-20 2E-24 190.7 15.7 173 285-475 11-190 (306)
57 1ozn_A Reticulon 4 receptor; N 99.8 8.5E-20 2.9E-24 187.4 15.6 173 284-474 14-191 (285)
58 3zyj_A Leucine-rich repeat-con 99.8 4.3E-19 1.5E-23 194.1 18.8 241 283-580 45-290 (440)
59 3zyi_A Leucine-rich repeat-con 99.8 4.5E-19 1.6E-23 194.7 18.9 241 283-580 56-301 (452)
60 1z7x_W Ribonuclease inhibitor; 99.8 8.9E-22 3E-26 217.4 -2.9 153 281-436 3-183 (461)
61 3ogk_B Coronatine-insensitive 99.8 4.3E-20 1.5E-24 210.8 9.0 369 301-701 110-524 (592)
62 2z66_A Variable lymphocyte rec 99.8 5.8E-19 2E-23 183.2 16.0 196 266-477 14-216 (306)
63 2z80_A TOLL-like receptor 2, v 99.8 3.6E-19 1.2E-23 188.8 14.4 263 266-556 38-314 (353)
64 3zyj_A Leucine-rich repeat-con 99.8 1.8E-18 6.1E-23 189.2 19.4 233 266-554 50-290 (440)
65 1ozn_A Reticulon 4 receptor; N 99.8 1.6E-18 5.4E-23 177.9 17.2 179 279-474 30-215 (285)
66 3o53_A Protein LRIM1, AGAP0063 99.8 2.8E-20 9.6E-25 193.9 3.9 246 301-614 32-278 (317)
67 3zyi_A Leucine-rich repeat-con 99.8 2E-18 6.9E-23 189.5 18.7 233 266-554 61-301 (452)
68 1z7x_W Ribonuclease inhibitor; 99.8 5.7E-21 2E-25 210.9 -2.7 334 280-662 27-409 (461)
69 3ogk_B Coronatine-insensitive 99.8 4.2E-20 1.4E-24 210.9 4.3 350 301-701 71-474 (592)
70 3o53_A Protein LRIM1, AGAP0063 99.8 7.4E-20 2.5E-24 190.7 5.4 238 280-583 33-276 (317)
71 2p1m_B Transport inhibitor res 99.8 1.7E-19 5.8E-24 206.0 4.8 365 301-702 103-518 (594)
72 1p9a_G Platelet glycoprotein I 99.7 1.3E-17 4.4E-22 170.9 15.8 181 280-479 9-191 (290)
73 2z62_A TOLL-like receptor 4, v 99.7 1.6E-17 5.4E-22 169.5 15.3 140 291-436 17-162 (276)
74 2o6q_A Variable lymphocyte rec 99.7 2.8E-17 9.7E-22 166.9 16.8 178 282-477 17-198 (270)
75 2o6q_A Variable lymphocyte rec 99.7 5.3E-17 1.8E-21 164.9 18.5 190 266-473 23-218 (270)
76 1wwl_A Monocyte differentiatio 99.7 8.2E-18 2.8E-22 174.8 12.7 199 301-554 93-307 (312)
77 1h6u_A Internalin H; cell adhe 99.7 2.8E-17 9.7E-22 170.1 16.5 189 279-492 39-227 (308)
78 3oja_A Leucine-rich immune mol 99.7 4.5E-18 1.5E-22 187.7 11.1 216 301-580 32-248 (487)
79 1p9a_G Platelet glycoprotein I 99.7 1.7E-17 5.7E-22 170.0 14.4 198 301-554 8-206 (290)
80 1h6u_A Internalin H; cell adhe 99.7 2.8E-17 9.5E-22 170.2 16.1 190 301-554 39-228 (308)
81 2z62_A TOLL-like receptor 4, v 99.7 7.1E-17 2.4E-21 164.7 16.7 190 270-478 18-218 (276)
82 2p1m_B Transport inhibitor res 99.7 4.4E-19 1.5E-23 202.5 0.2 326 324-701 99-467 (594)
83 1wwl_A Monocyte differentiatio 99.7 8.5E-19 2.9E-23 182.2 2.1 108 328-436 93-214 (312)
84 2xwt_C Thyrotropin receptor; s 99.7 2.6E-17 9E-22 163.9 12.8 138 293-436 23-169 (239)
85 3rfs_A Internalin B, repeat mo 99.7 4.8E-17 1.6E-21 165.4 14.3 174 279-471 39-216 (272)
86 2xwt_C Thyrotropin receptor; s 99.7 4.3E-17 1.5E-21 162.3 13.2 197 271-488 23-232 (239)
87 3m19_A Variable lymphocyte rec 99.7 1.7E-16 5.9E-21 159.2 16.0 175 282-474 15-193 (251)
88 3rfs_A Internalin B, repeat mo 99.7 1E-16 3.6E-21 162.8 13.6 157 301-477 39-198 (272)
89 3oja_A Leucine-rich immune mol 99.7 1.7E-17 5.9E-22 183.0 8.3 232 280-577 33-270 (487)
90 1h6t_A Internalin B; cell adhe 99.7 5E-16 1.7E-20 159.2 16.6 173 279-476 44-216 (291)
91 4glp_A Monocyte differentiatio 99.7 3.3E-16 1.1E-20 162.6 12.0 184 282-478 65-269 (310)
92 4ay9_X Follicle-stimulating ho 99.6 3.6E-15 1.2E-19 157.5 19.7 102 333-436 12-117 (350)
93 3m19_A Variable lymphocyte rec 99.6 3.4E-15 1.2E-19 149.6 17.0 166 266-436 21-192 (251)
94 2ast_B S-phase kinase-associat 99.6 1.8E-16 6E-21 166.9 7.0 148 304-470 48-205 (336)
95 2ast_B S-phase kinase-associat 99.6 2.9E-16 9.9E-21 165.3 8.1 146 282-434 48-206 (336)
96 1h6t_A Internalin B; cell adhe 99.6 3.4E-15 1.2E-19 153.0 15.4 166 301-491 44-209 (291)
97 4ay9_X Follicle-stimulating ho 99.6 4.4E-15 1.5E-19 156.8 14.9 148 285-436 13-167 (350)
98 1m9s_A Internalin B; cell inva 99.6 3.3E-15 1.1E-19 167.9 14.5 175 278-477 40-214 (605)
99 3e6j_A Variable lymphocyte rec 99.6 6.9E-15 2.4E-19 144.9 15.1 149 283-436 21-172 (229)
100 4ezg_A Putative uncharacterize 99.6 4.2E-15 1.4E-19 142.9 12.9 147 280-435 43-193 (197)
101 2o6s_A Variable lymphocyte rec 99.6 3.4E-15 1.2E-19 145.0 11.5 168 285-477 11-183 (208)
102 2ca6_A RAN GTPase-activating p 99.6 1.8E-16 6.2E-21 170.2 2.4 39 327-365 91-134 (386)
103 4ezg_A Putative uncharacterize 99.6 8.6E-15 2.9E-19 140.7 13.1 151 301-474 42-195 (197)
104 4glp_A Monocyte differentiatio 99.6 6.7E-15 2.3E-19 152.7 12.7 193 281-490 91-302 (310)
105 1xeu_A Internalin C; cellular 99.6 3E-15 1E-19 150.8 9.7 170 281-476 19-188 (263)
106 2v9t_B SLIT homolog 2 protein 99.6 1.1E-14 3.7E-19 142.5 12.9 148 284-436 14-165 (220)
107 2ca6_A RAN GTPase-activating p 99.6 8.1E-16 2.8E-20 165.1 5.1 135 327-472 29-199 (386)
108 2v70_A SLIT-2, SLIT homolog 2 99.6 1.2E-14 4.2E-19 142.1 12.8 149 284-436 14-166 (220)
109 3cvr_A Invasion plasmid antige 99.6 2.8E-14 9.6E-19 158.5 16.4 134 282-436 60-193 (571)
110 3goz_A Leucine-rich repeat-con 99.6 2.7E-15 9.2E-20 159.3 7.1 111 325-436 17-151 (362)
111 1m9s_A Internalin B; cell inva 99.6 9.1E-15 3.1E-19 164.4 11.7 177 292-493 32-208 (605)
112 2o6s_A Variable lymphocyte rec 99.5 2.7E-14 9.2E-19 138.7 12.6 152 278-440 25-182 (208)
113 3cvr_A Invasion plasmid antige 99.5 6.9E-14 2.4E-18 155.3 15.7 171 266-473 66-243 (571)
114 2v9t_B SLIT homolog 2 protein 99.5 4.2E-14 1.5E-18 138.3 12.2 147 306-472 14-164 (220)
115 2xot_A Amphoterin-induced prot 99.5 7E-14 2.4E-18 148.2 13.8 147 285-436 22-176 (361)
116 2v70_A SLIT-2, SLIT homolog 2 99.5 7.4E-14 2.5E-18 136.5 12.7 148 306-473 14-166 (220)
117 1xeu_A Internalin C; cellular 99.5 6.5E-14 2.2E-18 141.0 12.5 148 278-436 38-185 (263)
118 3goz_A Leucine-rich repeat-con 99.5 3E-15 1E-19 158.9 2.8 159 302-474 21-210 (362)
119 3e6j_A Variable lymphocyte rec 99.5 1.2E-13 4.1E-18 136.0 13.4 148 305-473 21-172 (229)
120 2xot_A Amphoterin-induced prot 99.5 3.2E-14 1.1E-18 150.8 9.9 150 281-434 39-200 (361)
121 2ell_A Acidic leucine-rich nuc 99.5 1.3E-13 4.4E-18 128.8 11.9 138 329-477 23-164 (168)
122 4b8c_D Glucose-repressible alc 99.4 1.3E-13 4.4E-18 159.2 10.0 154 281-440 173-333 (727)
123 2je0_A Acidic leucine-rich nuc 99.4 2.5E-13 8.5E-18 124.0 9.4 124 303-430 17-147 (149)
124 2ell_A Acidic leucine-rich nuc 99.4 2.9E-13 9.8E-18 126.4 9.3 130 303-436 24-160 (168)
125 1a9n_A U2A', U2A'; complex (nu 99.4 5.7E-13 1.9E-17 125.3 9.6 129 301-435 17-152 (176)
126 2wfh_A SLIT homolog 2 protein 99.4 1.3E-12 4.6E-17 124.6 12.1 124 306-436 13-139 (193)
127 4b8c_D Glucose-repressible alc 99.4 1.7E-13 5.9E-18 158.1 5.8 139 297-440 217-358 (727)
128 2je0_A Acidic leucine-rich nuc 99.4 8.5E-13 2.9E-17 120.4 9.1 123 280-407 16-149 (149)
129 1w8a_A SLIT protein; signaling 99.4 1.7E-12 5.9E-17 123.8 11.0 105 331-436 30-139 (192)
130 1w8a_A SLIT protein; signaling 99.4 1.7E-12 5.6E-17 124.0 10.7 125 333-473 11-139 (192)
131 1a9n_A U2A', U2A'; complex (nu 99.4 1.4E-12 4.6E-17 122.7 9.3 135 326-472 15-152 (176)
132 2wfh_A SLIT homolog 2 protein 99.3 7E-12 2.4E-16 119.5 11.9 125 332-472 12-138 (193)
133 2o6r_A Variable lymphocyte rec 99.3 2E-11 6.7E-16 114.9 12.8 122 284-409 10-135 (177)
134 2o6r_A Variable lymphocyte rec 99.3 1.6E-11 5.5E-16 115.5 12.1 126 305-437 9-138 (177)
135 1ds9_A Outer arm dynein; leuci 99.3 9.1E-14 3.1E-18 133.6 -3.5 140 320-466 39-180 (198)
136 1dce_A Protein (RAB geranylger 99.3 1.1E-11 3.8E-16 138.4 12.6 123 331-467 442-567 (567)
137 1dce_A Protein (RAB geranylger 99.3 9.2E-12 3.1E-16 139.1 11.7 190 283-488 351-566 (567)
138 1ds9_A Outer arm dynein; leuci 99.2 5.1E-13 1.8E-17 128.3 -3.3 142 283-429 25-180 (198)
139 2r9u_A Variable lymphocyte rec 99.2 8.4E-11 2.9E-15 109.9 10.5 100 333-435 15-117 (174)
140 3g39_A Variable lymphocyte rec 99.2 9.9E-11 3.4E-15 109.0 10.5 102 332-436 11-115 (170)
141 2r9u_A Variable lymphocyte rec 99.1 3.3E-10 1.1E-14 105.8 11.0 97 306-408 15-115 (174)
142 3g39_A Variable lymphocyte rec 99.0 1E-09 3.5E-14 102.0 10.6 98 306-409 12-113 (170)
143 3sb4_A Hypothetical leucine ri 99.0 5.4E-10 1.8E-14 116.5 8.1 57 302-362 100-157 (329)
144 3un9_A NLR family member X1; l 98.9 4.1E-10 1.4E-14 118.8 2.3 13 281-293 72-84 (372)
145 3sb4_A Hypothetical leucine ri 98.9 6.8E-09 2.3E-13 108.2 10.6 64 320-384 83-157 (329)
146 2ifg_A High affinity nerve gro 98.7 1.8E-08 6.2E-13 105.9 9.4 87 320-408 23-113 (347)
147 4fdw_A Leucine rich hypothetic 98.7 2.2E-07 7.7E-12 98.8 15.8 233 282-579 114-355 (401)
148 4fdw_A Leucine rich hypothetic 98.7 1.3E-06 4.4E-11 93.0 20.9 258 302-634 112-379 (401)
149 2ifg_A High affinity nerve gro 98.6 5.1E-08 1.7E-12 102.4 8.9 97 336-435 14-115 (347)
150 3un9_A NLR family member X1; l 98.6 5E-09 1.7E-13 110.5 0.9 162 302-474 71-253 (372)
151 2ra8_A Uncharacterized protein 98.4 4.3E-07 1.5E-11 94.8 7.8 137 324-472 166-319 (362)
152 4fs7_A Uncharacterized protein 98.4 2.3E-05 7.7E-10 83.6 20.7 301 301-659 69-374 (394)
153 2qen_A Walker-type ATPase; unk 98.2 4.5E-05 1.5E-09 79.8 19.8 211 15-253 112-348 (350)
154 4fs7_A Uncharacterized protein 98.2 1.2E-05 4.1E-10 85.8 15.1 285 320-659 61-351 (394)
155 2ra8_A Uncharacterized protein 98.2 1.7E-06 5.7E-11 90.4 6.5 138 519-662 171-318 (362)
156 3e4g_A ATP synthase subunit S, 98.2 1.6E-06 5.6E-11 79.1 5.4 94 320-414 52-155 (176)
157 2fna_A Conserved hypothetical 98.1 4.6E-05 1.6E-09 79.9 16.1 205 22-253 126-356 (357)
158 1io0_A Tropomodulin; LRR prote 98.1 2.7E-06 9.2E-11 79.9 5.5 109 326-436 32-164 (185)
159 3e4g_A ATP synthase subunit S, 98.0 1.6E-06 5.5E-11 79.1 3.0 41 625-666 114-154 (176)
160 1io0_A Tropomodulin; LRR prote 97.9 6E-06 2.1E-10 77.5 4.6 109 301-409 34-162 (185)
161 3rw6_A Nuclear RNA export fact 97.9 1.6E-05 5.4E-10 78.5 6.6 62 327-388 167-233 (267)
162 1w5s_A Origin recognition comp 97.8 0.00013 4.4E-09 78.3 13.9 218 2-237 106-371 (412)
163 4gt6_A Cell surface protein; l 97.8 0.0028 9.6E-08 67.2 23.2 295 304-661 65-367 (394)
164 4gt6_A Cell surface protein; l 97.6 0.0021 7.3E-08 68.1 19.5 294 283-634 66-366 (394)
165 3rw6_A Nuclear RNA export fact 97.6 9.6E-05 3.3E-09 72.9 7.2 79 350-429 167-257 (267)
166 1njg_A DNA polymerase III subu 97.1 0.0011 3.7E-08 64.9 8.4 103 30-133 125-231 (250)
167 2qby_B CDC6 homolog 3, cell di 96.8 0.053 1.8E-06 56.9 18.8 196 16-237 119-339 (384)
168 4h09_A Hypothetical leucine ri 96.6 0.089 3E-06 55.1 18.9 80 567-658 238-317 (379)
169 2v1u_A Cell division control p 96.4 0.038 1.3E-06 58.1 14.3 210 3-236 99-350 (387)
170 2chg_A Replication factor C sm 95.9 0.022 7.7E-07 54.4 9.1 99 30-131 101-205 (226)
171 2qby_A CDC6 homolog 1, cell di 95.9 0.058 2E-06 56.6 12.7 110 15-127 111-242 (386)
172 1fnn_A CDC6P, cell division co 95.3 0.21 7.2E-06 52.3 14.7 124 3-129 94-246 (389)
173 4h09_A Hypothetical leucine ri 95.2 0.048 1.6E-06 57.2 8.9 123 301-431 215-341 (379)
174 1pgv_A TMD-1, tropomodulin TMD 94.9 0.027 9.4E-07 52.2 5.2 107 327-434 38-168 (197)
175 1sxj_B Activator 1 37 kDa subu 94.7 0.081 2.8E-06 53.9 8.8 99 30-131 106-211 (323)
176 3rfe_A Platelet glycoprotein I 94.1 0.088 3E-06 45.4 6.3 50 334-385 12-65 (130)
177 1pgv_A TMD-1, tropomodulin TMD 93.6 0.045 1.5E-06 50.7 3.8 107 302-408 40-167 (197)
178 3rfe_A Platelet glycoprotein I 93.4 0.12 4.3E-06 44.4 6.0 35 331-365 32-67 (130)
179 1hqc_A RUVB; extended AAA-ATPa 92.8 0.23 7.9E-06 50.5 8.2 111 22-133 79-214 (324)
180 1iqp_A RFCS; clamp loader, ext 91.5 0.42 1.4E-05 48.5 8.3 104 30-134 109-216 (327)
181 2chq_A Replication factor C sm 89.6 1.8 6.1E-05 43.6 11.0 101 30-131 101-205 (319)
182 1jr3_A DNA polymerase III subu 88.7 0.77 2.6E-05 47.6 7.6 98 30-130 118-221 (373)
183 1d2n_A N-ethylmaleimide-sensit 84.3 5.8 0.0002 38.7 10.9 123 21-150 114-262 (272)
184 2z4s_A Chromosomal replication 78.8 5 0.00017 42.5 8.6 94 31-127 194-303 (440)
185 3bos_A Putative DNA replicatio 78.7 0.9 3.1E-05 43.5 2.5 96 31-129 104-216 (242)
186 1a5t_A Delta prime, HOLB; zinc 75.2 5.9 0.0002 40.2 7.6 103 20-128 93-203 (334)
187 3h4m_A Proteasome-activating n 74.1 12 0.0004 36.7 9.4 109 17-127 96-228 (285)
188 1sxj_E Activator 1 40 kDa subu 72.7 5.5 0.00019 40.6 6.8 101 31-131 134-238 (354)
189 2qz4_A Paraplegin; AAA+, SPG7, 72.2 23 0.0008 33.8 11.0 105 20-124 87-215 (262)
190 1jr3_D DNA polymerase III, del 69.4 25 0.00085 35.5 10.8 114 15-129 60-184 (343)
191 3eie_A Vacuolar protein sortin 64.3 85 0.0029 31.1 13.5 108 17-127 96-225 (322)
192 1sxj_D Activator 1 41 kDa subu 60.8 17 0.00057 36.8 7.6 96 31-129 133-234 (353)
193 2qp9_X Vacuolar protein sortin 59.0 85 0.0029 31.7 12.5 108 18-128 130-259 (355)
194 3syl_A Protein CBBX; photosynt 58.2 15 0.0005 36.5 6.4 67 31-99 130-217 (309)
195 1xwi_A SKD1 protein; VPS4B, AA 57.1 87 0.003 31.1 12.0 109 17-128 91-221 (322)
196 3d8b_A Fidgetin-like protein 1 56.8 57 0.002 33.0 10.7 112 17-129 162-294 (357)
197 1l8q_A Chromosomal replication 55.8 22 0.00075 35.5 7.3 90 31-125 98-203 (324)
198 3pvs_A Replication-associated 55.6 52 0.0018 34.6 10.3 102 29-131 104-216 (447)
199 3vfd_A Spastin; ATPase, microt 48.8 1.3E+02 0.0043 30.8 12.0 110 18-128 194-324 (389)
200 1sxj_A Activator 1 95 kDa subu 48.3 25 0.00087 37.9 6.7 96 30-130 147-253 (516)
201 3u61_B DNA polymerase accessor 44.7 20 0.00069 35.8 4.9 101 31-133 105-219 (324)
202 3te6_A Regulatory protein SIR3 44.0 72 0.0025 31.7 8.6 96 2-99 100-211 (318)
203 2zan_A Vacuolar protein sortin 43.9 1.8E+02 0.0061 30.4 12.3 103 20-123 216-337 (444)
204 3uk6_A RUVB-like 2; hexameric 41.4 90 0.0031 31.5 9.4 88 33-127 191-300 (368)
205 3pfi_A Holliday junction ATP-d 37.9 61 0.0021 32.4 7.3 100 30-130 105-227 (338)
206 1jbk_A CLPB protein; beta barr 33.0 19 0.00066 32.2 2.3 73 21-95 104-194 (195)
207 3b9p_A CG5977-PA, isoform A; A 30.0 3.7E+02 0.013 25.7 12.8 110 16-128 98-231 (297)
208 1g5t_A COB(I)alamin adenosyltr 29.6 30 0.001 31.6 2.9 50 20-69 109-163 (196)
209 2gno_A DNA polymerase III, gam 28.2 49 0.0017 32.7 4.5 79 20-99 67-152 (305)
210 1sxj_C Activator 1 40 kDa subu 26.3 1E+02 0.0036 30.7 6.7 92 31-125 110-207 (340)
211 2gkw_B Tumor necrosis factor r 22.9 56 0.0019 18.0 1.9 18 52-69 3-20 (26)
212 3t15_A Ribulose bisphosphate c 22.3 2.2E+02 0.0076 27.6 8.0 41 58-100 154-199 (293)
213 4b4t_J 26S protease regulatory 21.5 5.7E+02 0.019 26.1 10.9 106 16-123 226-354 (405)
214 3cf0_A Transitional endoplasmi 20.5 2.9E+02 0.0098 26.8 8.5 103 21-125 98-223 (301)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.7e-34 Score=323.58 Aligned_cols=240 Identities=16% Similarity=0.148 Sum_probs=182.8
Q ss_pred hHHHHhCCCC--------ccccHHHHHHHHHHHHhcCC-cEEEEEEcCCCchhhhhccccCCCCCCCcEEEEEeCChHHH
Q 042822 2 EIAEQIGLTL--------DKETEHARASMLYAQLKKSR-KILVILDNVWTELHLKDVGIPFGDEHKGCKVLLTTRGRDLL 72 (775)
Q Consensus 2 ~i~~~l~~~~--------~~~~~~~~~~~l~~~l~~~k-r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTTR~~~v~ 72 (775)
+|+++++... +..+..+++..+++.|. +| ||||||||||+.+++ .+ + ..+||+||||||++.|+
T Consensus 206 ~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~-~~kr~LlVLDdv~~~~~~-~~----~-~~~gs~ilvTTR~~~v~ 278 (549)
T 2a5y_B 206 DILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALI-DRPNTLFVFDDVVQEETI-RW----A-QELRLRCLVTTRDVEIS 278 (549)
T ss_dssp HHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHT-TSTTEEEEEEEECCHHHH-HH----H-HHTTCEEEEEESBGGGG
T ss_pred HHHHHHhcCcccccccccccccHHHHHHHHHHHHc-CCCcEEEEEECCCCchhh-cc----c-ccCCCEEEEEcCCHHHH
Confidence 5777887642 12345677889999998 65 999999999998865 11 1 12799999999999999
Q ss_pred hhcC-CCceEEcCCCCHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHhCCCchhHHHHHHHHhcCCcHHHHHHHHHH-hc
Q 042822 73 SRMG-SEADVRMDILNEEEAWRLFEVKLGNDGLIRRMKSTATQIVKQCGGLPIALEPIAKALRNKTESECWKNALHE-LR 150 (775)
Q Consensus 73 ~~~~-~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~~w~~~l~~-l~ 150 (775)
..++ ...+|+|++|+.+|||+||.++|+....++++.+++++|+++|+|+||||+++|+.|+.+ .++ |.+.+.. +.
T Consensus 279 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w~-~~~~l~~~l~ 356 (549)
T 2a5y_B 279 NAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TFE-KMAQLNNKLE 356 (549)
T ss_dssp GGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SHH-HHHHHHHHHH
T ss_pred HHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-hHH-HHHHhHHHhh
Confidence 9876 446899999999999999999996544457888999999999999999999999999877 333 3333322 11
Q ss_pred CCCcCcchhhhhhHHHHHHhhHhccCchhHHHHHH-----------hcCCCCCCCChhhHHHHHhhc--ccccccc-HHH
Q 042822 151 MPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQ-----------LCSLMPKSFFASDLFKYCIGL--GIFRGIN-MED 216 (775)
Q Consensus 151 ~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cf~-----------~~~~fp~~~~~~~li~~w~a~--g~i~~~~-~~~ 216 (775)
.. ....+.+++.+||++||++ +|.||+ |||+||+++.++ ++.|+|+ ||+.... ...
T Consensus 357 ~~-------~~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~ 426 (549)
T 2a5y_B 357 SR-------GLVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQL 426 (549)
T ss_dssp HH-------CSSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCC
T ss_pred cc-------cHHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCC
Confidence 10 1125777999999999998 899999 999999999999 8999999 9997653 112
Q ss_pred HHHHHHHHHHHHHHccceeccc--ccceEEehHHHHHHHHHHHhccC
Q 042822 217 ARNTLYTLVHELKDSCLLLEGY--SCREFSMHDVVHDVAILIACGEQ 261 (775)
Q Consensus 217 ~~~~~~~~~~~L~~~sl~~~~~--~~~~~~mHdlv~~l~~~~~~~e~ 261 (775)
.++.+. ++++|+++||++... ...+|+|||++|++|+.++.+++
T Consensus 427 ~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 427 DDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp THHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 233333 799999999998653 34579999999999998876654
No 2
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=9e-30 Score=291.81 Aligned_cols=457 Identities=17% Similarity=0.125 Sum_probs=297.5
Q ss_pred EEeecCCccCCCCcccccceeEEEEEcCCCCCCCC-CC-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCC
Q 042822 264 FLVRNGDVWEWPDKDALKKCYAISWIDSSGGELPE-GL-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQ 341 (775)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~lp~-~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~ 341 (775)
+...+.....+|. ..++++++|++++|.+..++. .+ ++++|++|++++|.+. .+++..|.++++|++|++++|.
T Consensus 16 ~~c~~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 16 YQCMDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE---TIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp EECTTSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC---EECTTTTTTCTTCCEEECTTCC
T ss_pred eEccCCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc---ccCHHHhhchhhcCEeECCCCc
Confidence 3344445555554 456899999999999988876 33 8999999999999887 5666667999999999999999
Q ss_pred CCCC-CcccccccCccEEEcCCCCCCC--ccccccCCcccEEEecCCCCc--ccchhhhccCCCCEecccCCccccccch
Q 042822 342 LFSL-PSSIDLLLNLRTLCLDHGTLGD--ITIIGELKNLEILSLIGSDIV--EFPEELGKLTKLRLLDLTNCFHLKVIAA 416 (775)
Q Consensus 342 ~~~l-p~~i~~l~~L~~L~L~~~~l~~--p~~i~~l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~~p~ 416 (775)
++.+ |..++++++|++|++++|.+.. +..++++++|++|++++|.++ .+|..++++++|++|++++| .+..++.
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~ 170 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITV 170 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECT
T ss_pred ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecCh
Confidence 9977 8899999999999999999987 467999999999999999988 58999999999999999998 4555554
Q ss_pred HHhhcccccc----EEEcCCCcccceecccCC------------------------------------------------
Q 042822 417 NLIASFTRLE----ELYMSNCFVEWKVEDEGS------------------------------------------------ 444 (775)
Q Consensus 417 ~~l~~L~~L~----~L~l~~~~~~~~~~~~~~------------------------------------------------ 444 (775)
..++.+++|+ +|++++|.+....+....
T Consensus 171 ~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~ 250 (606)
T 3vq2_A 171 NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250 (606)
T ss_dssp TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred hhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCccccc
Confidence 4466666654 677777665432221000
Q ss_pred -------------------ccccccccccccCCCCCCCEEEEEeeCCCCCCCccccccccceEEEecCCCCCCccccccc
Q 042822 445 -------------------SSKRSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKD 505 (775)
Q Consensus 445 -------------------~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~~ 505 (775)
...........+..+++|+.|+++++....+|....+++|+.|++..+....+|.+ .
T Consensus 251 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~-~--- 326 (606)
T 3vq2_A 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL-D--- 326 (606)
T ss_dssp CGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCC-C---
T ss_pred ChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccC-C---
Confidence 00000011122455677777777777777776333557777777777665544432 1
Q ss_pred cccccccccccccccccceEEEeccCcccccccccccccceEEeecccCCcccccccccccccccCcEEEeecCCCcccc
Q 042822 506 WFRISRSHFLILDHQSLRMLKLKLNCKTICSRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFI 585 (775)
Q Consensus 506 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i 585 (775)
+++|+.|+++++.... +..+..+++|++|++++|..............+++|+.|++++|. +..+
T Consensus 327 -------------l~~L~~L~l~~n~~~~-~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~ 391 (606)
T 3vq2_A 327 -------------LPFLKSLTLTMNKGSI-SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIM 391 (606)
T ss_dssp -------------CSSCCEEEEESCSSCE-ECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEE
T ss_pred -------------CCccceeeccCCcCcc-chhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccc
Confidence 7777777777763322 224457777888888776532211011123457778888887765 3322
Q ss_pred ccCCCcccCCcccccceeecccccccccccccccCcccccCCCeEEeccCCCCCccccchhhcCCCCccEEEEecccchH
Q 042822 586 VDSREIVDCDAFPLLELLSLQNLINLKTICVDRLSTESFAELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMK 665 (775)
Q Consensus 586 ~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~~L~ 665 (775)
. .....+++|+.|++.++.-....+ ......+++|++|++++|.-....|. .+..+++|++|++.+|.--.
T Consensus 392 ~-----~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~ 462 (606)
T 3vq2_A 392 S-----ANFMGLEELQHLDFQHSTLKRVTE--FSAFLSLEKLLYLDISYTNTKIDFDG--IFLGLTSLNTLKMAGNSFKD 462 (606)
T ss_dssp C-----CCCTTCTTCCEEECTTSEEESTTT--TTTTTTCTTCCEEECTTSCCEECCTT--TTTTCTTCCEEECTTCEEGG
T ss_pred h-----hhccCCCCCCeeECCCCccCCccC--hhhhhccccCCEEECcCCCCCccchh--hhcCCCCCCEEECCCCcCCC
Confidence 1 234567788888888764333221 02345678888888888753333332 56778888888887775322
Q ss_pred HHhhccCCCCcccCCCCCCccccccccCeEecCCCCCccccccCCCCCCCCCCccccccccc-ccCCCcceeecCCCCCc
Q 042822 666 EIFAIGGEEPDVADNSNANEKIEFAQIRYLSLGNLPELKSFFCELRGPSMSPNRRETQEGLT-ASTGDSEIIVEDMPDTW 744 (775)
Q Consensus 666 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~~~~~~~~~ 744 (775)
.++ |.....+++|+.|++++| .+..++.. .... .+.+ ..+. ..+....+.+. .+...
T Consensus 463 ~~~--------------~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~--l~~L---~~L~Ls~N~l~~~~~~-~~~~l 520 (606)
T 3vq2_A 463 NTL--------------SNVFANTTNLTFLDLSKC-QLEQISWG-VFDT--LHRL---QLLNMSHNNLLFLDSS-HYNQL 520 (606)
T ss_dssp GEE--------------CSCCTTCTTCCEEECTTS-CCCEECTT-TTTT--CTTC---CEEECCSSCCSCEEGG-GTTTC
T ss_pred cch--------------HHhhccCCCCCEEECCCC-cCCccChh-hhcc--cccC---CEEECCCCcCCCcCHH-HccCC
Confidence 221 445566788888888887 44444322 0111 1122 1121 12233333322 23445
Q ss_pred cccccceeeeccccchhhhhcccc-eeecccC
Q 042822 745 TSLFNEKRLWSCVKLMPKVFGTIK-LLVAFNV 775 (775)
Q Consensus 745 ~~l~~~~~~~p~l~~~p~~~~~L~-~L~~~~~ 775 (775)
..+...+++.++++.+|.++.+++ .|..+++
T Consensus 521 ~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l 552 (606)
T 3vq2_A 521 YSLSTLDCSFNRIETSKGILQHFPKSLAFFNL 552 (606)
T ss_dssp TTCCEEECTTSCCCCEESCGGGSCTTCCEEEC
T ss_pred CcCCEEECCCCcCcccCHhHhhhcccCcEEEc
Confidence 667777777888888877777775 4666553
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=3.7e-30 Score=301.75 Aligned_cols=444 Identities=17% Similarity=0.079 Sum_probs=241.4
Q ss_pred ccceeEEEEEcCCCCCCCCCC-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCC-CCCcccccccCccE
Q 042822 280 LKKCYAISWIDSSGGELPEGL-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLF-SLPSSIDLLLNLRT 357 (775)
Q Consensus 280 ~~~~~~l~l~~~~~~~lp~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~ 357 (775)
..++++|++.+|.+...++.+ .+++|++|++++|.+.. .+|.. +..+++|++|++++|.+. .+|.. .+++|++
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~ 273 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG--DFSRA-ISTCTELKLLNISSNQFVGPIPPL--PLKSLQY 273 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCS--CHHHH-TTTCSSCCEEECCSSCCEESCCCC--CCTTCCE
T ss_pred CCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCC--cccHH-HhcCCCCCEEECCCCcccCccCcc--ccCCCCE
Confidence 344555555555443322212 45555555555554432 22322 245555555555555544 22322 4455555
Q ss_pred EEcCCCCCCC--ccccccC-CcccEEEecCCCCc-ccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCC
Q 042822 358 LCLDHGTLGD--ITIIGEL-KNLEILSLIGSDIV-EFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNC 433 (775)
Q Consensus 358 L~L~~~~l~~--p~~i~~l-~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~ 433 (775)
|++++|.+.. |..++++ ++|++|++++|.++ .+|..++++++|++|++++|...+.+|...++++++|++|++++|
T Consensus 274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp EECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS
T ss_pred EECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC
Confidence 5555555442 4444432 55555555555444 445555555555555555553333445444555555555555555
Q ss_pred cccceecccCCccccccccccccCCCC-CCCEEEEEeeCCC-CCCCcc-c--cccccceEEEecCCCCCCcccccccccc
Q 042822 434 FVEWKVEDEGSSSKRSKASLDELMPLP-RLTTLEIAVENDN-ALPEGF-F--VRELERFKILIGDRSFEPPVILSKDWFR 508 (775)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~l~~l~~l~-~L~~L~l~~~~~~-~~~~~~-~--~~~L~~L~l~~~~~~~l~~l~~~~~~~~ 508 (775)
.+.+.+| ..+..++ +|+.|+++.|... .+|..+ . .++|+.|++..+....
T Consensus 354 ~l~~~~p-------------~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~------------ 408 (768)
T 3rgz_A 354 EFSGELP-------------ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG------------ 408 (768)
T ss_dssp EEEECCC-------------TTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE------------
T ss_pred ccCcccc-------------HHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccc------------
Confidence 5443333 3344443 5555555544322 122222 1 3445555444333210
Q ss_pred ccccccccccccccceEEEeccCcc-cccccccccccceEEeecccCCcccccccccccccccCcEEEeecCCCcccccc
Q 042822 509 ISRSHFLILDHQSLRMLKLKLNCKT-ICSRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVD 587 (775)
Q Consensus 509 ~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~ 587 (775)
..+..+..+++|+.|+++++... ..|..+..+++|++|++++|.....++.. ...+++|+.|++++|.-...+
T Consensus 409 --~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~-- 482 (768)
T 3rgz_A 409 --KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE--LMYVKTLETLILDFNDLTGEI-- 482 (768)
T ss_dssp --ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG--GGGCTTCCEEECCSSCCCSCC--
T ss_pred --ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH--HcCCCCceEEEecCCcccCcC--
Confidence 11122344788888888876554 55677778888888888888755555443 345788888888887532221
Q ss_pred CCCcccCCcccccceeecccccccccccccccCcccccCCCeEEeccCCCCCccccchhhcCCCCccEEEEecccchHHH
Q 042822 588 SREIVDCDAFPLLELLSLQNLINLKTICVDRLSTESFAELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEI 667 (775)
Q Consensus 588 ~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~~L~~l 667 (775)
......+++|+.|++.++.-...+ |...+.+++|++|++++|.-...+|. .+..+++|+.|++++|+-...+
T Consensus 483 ---p~~l~~l~~L~~L~L~~N~l~~~~---p~~~~~l~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 483 ---PSGLSNCTNLNWISLSNNRLTGEI---PKWIGRLENLAILKLSNNSFSGNIPA--ELGDCRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp ---CGGGGGCTTCCEEECCSSCCCSCC---CGGGGGCTTCCEEECCSSCCEEECCG--GGGGCTTCCEEECCSSEEESBC
T ss_pred ---CHHHhcCCCCCEEEccCCccCCcC---ChHHhcCCCCCEEECCCCcccCcCCH--HHcCCCCCCEEECCCCccCCcC
Confidence 223456788999999887655455 44556788999999998865556655 6788899999999877533222
Q ss_pred hhccCCCCc-------------------------------------------------------ccCCCCCCcccccccc
Q 042822 668 FAIGGEEPD-------------------------------------------------------VADNSNANEKIEFAQI 692 (775)
Q Consensus 668 ~~~~~~~~~-------------------------------------------------------~~~~~~~~~~~~~~~L 692 (775)
+..-..... ......|.....+++|
T Consensus 555 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L 634 (768)
T 3rgz_A 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634 (768)
T ss_dssp CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC
T ss_pred ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc
Confidence 211000000 0000012334456778
Q ss_pred CeEecCCCCCccccccCCCCCCCCCCccccccccc-ccCCCcceeecCCCCCccccccceeeeccccch-hhhhccccee
Q 042822 693 RYLSLGNLPELKSFFCELRGPSMSPNRRETQEGLT-ASTGDSEIIVEDMPDTWTSLFNEKRLWSCVKLM-PKVFGTIKLL 770 (775)
Q Consensus 693 ~~L~l~~c~~L~~l~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~~~~~p~l~~~-p~~~~~L~~L 770 (775)
+.|+++++.--..+|.. ...+. .+ ..+- ..+.+.+.++.. ++....+-..+++.+++++. |.++.+|++|
T Consensus 635 ~~LdLs~N~l~g~ip~~--l~~l~--~L---~~L~Ls~N~l~g~ip~~-l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L 706 (768)
T 3rgz_A 635 MFLDMSYNMLSGYIPKE--IGSMP--YL---FILNLGHNDISGSIPDE-VGDLRGLNILDLSSNKLDGRIPQAMSALTML 706 (768)
T ss_dssp CEEECCSSCCBSCCCGG--GGGCT--TC---CEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCEECCCGGGGGCCCC
T ss_pred cEEECcCCcccccCCHH--Hhccc--cC---CEEeCcCCccCCCCChH-HhCCCCCCEEECCCCcccCcCChHHhCCCCC
Confidence 88888887544455533 11111 11 1111 234455555543 34556677788889999876 8999999999
Q ss_pred ecccC
Q 042822 771 VAFNV 775 (775)
Q Consensus 771 ~~~~~ 775 (775)
..+||
T Consensus 707 ~~L~l 711 (768)
T 3rgz_A 707 TEIDL 711 (768)
T ss_dssp SEEEC
T ss_pred CEEEC
Confidence 88875
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=1.1e-28 Score=282.72 Aligned_cols=461 Identities=16% Similarity=0.112 Sum_probs=284.5
Q ss_pred ecCCccCCCCcccccceeEEEEEcCCCCCCCC-CC-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCC
Q 042822 267 RNGDVWEWPDKDALKKCYAISWIDSSGGELPE-GL-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFS 344 (775)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~l~l~~~~~~~lp~-~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~ 344 (775)
.+......|. ..+..+++|++++|.+..+++ .+ ++++|++|++++|.+. .+++..|.++++|++|++++|.+..
T Consensus 20 ~~~~l~~iP~-~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~Ls~n~l~~ 95 (606)
T 3t6q_A 20 ENLGLNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY---WIHEDTFQSQHRLDTLVLTANPLIF 95 (606)
T ss_dssp TTSCCSSCCT-TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC---EECTTTTTTCTTCCEEECTTCCCSE
T ss_pred CCCCcccCcC-CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccc---eeChhhccCccccCeeeCCCCcccc
Confidence 3344444443 456789999999999988854 44 8999999999999877 4555556999999999999999985
Q ss_pred C-CcccccccCccEEEcCCCCCCC--ccccccCCcccEEEecCCCCcccc-hhhhccCCCCEecccCCccccccchHHhh
Q 042822 345 L-PSSIDLLLNLRTLCLDHGTLGD--ITIIGELKNLEILSLIGSDIVEFP-EELGKLTKLRLLDLTNCFHLKVIAANLIA 420 (775)
Q Consensus 345 l-p~~i~~l~~L~~L~L~~~~l~~--p~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~~p~~~l~ 420 (775)
+ |..++++++|++|++++|.+.. +..++++++|++|++++|.++.++ ..+..+++|++|++++| .+..+++..++
T Consensus 96 ~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 174 (606)
T 3t6q_A 96 MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMS 174 (606)
T ss_dssp ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS-CCCEECHHHHH
T ss_pred cChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccC-cccccChhhhh
Confidence 5 7889999999999999999988 577999999999999999998762 33445999999999998 56666555599
Q ss_pred cccccc--EEEcCCCcccceecccCCcc---------------------------------------cc-----------
Q 042822 421 SFTRLE--ELYMSNCFVEWKVEDEGSSS---------------------------------------KR----------- 448 (775)
Q Consensus 421 ~L~~L~--~L~l~~~~~~~~~~~~~~~~---------------------------------------~~----------- 448 (775)
.+++|+ +|++++|.+....+..-... .-
T Consensus 175 ~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~ 254 (606)
T 3t6q_A 175 SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM 254 (606)
T ss_dssp TTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGS
T ss_pred hhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcC
Confidence 999999 89999998776544211000 00
Q ss_pred ------------ccccccccCCCCCCCEEEEEeeCCCCCCCcc-ccccccceEEEecCCCCCCccccccccccccccccc
Q 042822 449 ------------SKASLDELMPLPRLTTLEIAVENDNALPEGF-FVRELERFKILIGDRSFEPPVILSKDWFRISRSHFL 515 (775)
Q Consensus 449 ------------~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~~~~ 515 (775)
.......++.+++|+.|+++++.+..+|..+ .+++|+.|++..+.....+ +..
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~--------------~~~ 320 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLC--------------QIS 320 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGG--------------GGC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCc--------------hhh
Confidence 0000111444556666666665555555544 3455555555444322211 112
Q ss_pred cccccccceEEEeccCcc-cccc-cccccccceEEeecccCCcccccccccccccccCcEEEeecCCCccccccCCCccc
Q 042822 516 ILDHQSLRMLKLKLNCKT-ICSR-KLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVD 593 (775)
Q Consensus 516 ~~~~~~L~~L~l~~~~~~-~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~ 593 (775)
+..+++|+.|+++++... ..+. .+..+++|++|++++|..............+++|+.|++++|. +..+ ....
T Consensus 321 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~----~~~~ 395 (606)
T 3t6q_A 321 ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSL----KTEA 395 (606)
T ss_dssp GGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEE----CTTT
T ss_pred hhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcC----CHHH
Confidence 233667777777765433 2222 3556777777777766543222111123456777777777664 2221 1113
Q ss_pred CCcccccceeecccccccccccccccCcccccCCCeEEeccCCCCCccccchhhcCCCCccEEEEecccchHHHhhccCC
Q 042822 594 CDAFPLLELLSLQNLINLKTICVDRLSTESFAELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGE 673 (775)
Q Consensus 594 ~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~ 673 (775)
...+++|+.|++.++......+ +.....+++|++|++++|. ++..++ ..+..+++|++|++++|+--...+.
T Consensus 396 ~~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---- 467 (606)
T 3t6q_A 396 FKECPQLELLDLAFTRLKVKDA--QSPFQNLHLLKVLNLSHSL-LDISSE-QLFDGLPALQHLNLQGNHFPKGNIQ---- 467 (606)
T ss_dssp TTTCTTCSEEECTTCCEECCTT--CCTTTTCTTCCEEECTTCC-CBTTCT-TTTTTCTTCCEEECTTCBCGGGEEC----
T ss_pred hcCCccCCeEECCCCcCCCccc--chhhhCcccCCEEECCCCc-cCCcCH-HHHhCCCCCCEEECCCCCCCccccc----
Confidence 3456777777777664322221 1224567778888887764 343333 2566778888888877652211100
Q ss_pred CCcccCCCCCCccccccccCeEecCCCCCccccccCCCCCCCCCCcccccccccccCCCcceeecCCCCCccccccceee
Q 042822 674 EPDVADNSNANEKIEFAQIRYLSLGNLPELKSFFCELRGPSMSPNRRETQEGLTASTGDSEIIVEDMPDTWTSLFNEKRL 753 (775)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 753 (775)
.+.....+++|+.|++++| .+..++.. .... .+.++.+.. ..+...+..+. .+.....+ ..+++
T Consensus 468 --------~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~--l~~L~~L~L--s~N~l~~~~~~-~l~~l~~L-~L~L~ 531 (606)
T 3t6q_A 468 --------KTNSLQTLGRLEILVLSFC-DLSSIDQH-AFTS--LKMMNHVDL--SHNRLTSSSIE-ALSHLKGI-YLNLA 531 (606)
T ss_dssp --------SSCGGGGCTTCCEEECTTS-CCCEECTT-TTTT--CTTCCEEEC--CSSCCCGGGGG-GGTTCCSC-EEECC
T ss_pred --------cchhhccCCCccEEECCCC-ccCccChh-hhcc--ccCCCEEEC--CCCccCcCChh-HhCccccc-EEECc
Confidence 1234566788888888887 44444322 0111 122211111 12223333222 23344555 67777
Q ss_pred eccccch-hhhhcccceeecccC
Q 042822 754 WSCVKLM-PKVFGTIKLLVAFNV 775 (775)
Q Consensus 754 ~p~l~~~-p~~~~~L~~L~~~~~ 775 (775)
.++++.+ |..+++++.|..+++
T Consensus 532 ~N~l~~~~~~~~~~l~~L~~L~l 554 (606)
T 3t6q_A 532 SNHISIILPSLLPILSQQRTINL 554 (606)
T ss_dssp SSCCCCCCGGGHHHHHTSSEEEC
T ss_pred CCcccccCHhhcccCCCCCEEeC
Confidence 8888887 666777777766654
No 5
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.1e-28 Score=280.83 Aligned_cols=388 Identities=16% Similarity=0.126 Sum_probs=255.3
Q ss_pred eecCCccCCCCcccccceeEEEEEcCCCCCCCCC-C-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCC
Q 042822 266 VRNGDVWEWPDKDALKKCYAISWIDSSGGELPEG-L-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLF 343 (775)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~lp~~-~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~ 343 (775)
..+.....+|. ..++++++|++++|.+..++.. + ++++|++|++++|.+. .++...|.++++|++|++++|.++
T Consensus 14 c~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~---~i~~~~~~~l~~L~~L~L~~n~l~ 89 (570)
T 2z63_A 14 CMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLILTGNPIQ 89 (570)
T ss_dssp CCSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC---EECTTTTTTCTTCCEEECTTCCCC
T ss_pred eCCCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC---ccCcccccCchhCCEEeCcCCcCC
Confidence 33344555554 4567899999999999887753 3 8999999999999877 577777799999999999999999
Q ss_pred CCC-cccccccCccEEEcCCCCCCC-cc-ccccCCcccEEEecCCCCcc--cchhhhccCCCCEecccCCccccccchHH
Q 042822 344 SLP-SSIDLLLNLRTLCLDHGTLGD-IT-IIGELKNLEILSLIGSDIVE--FPEELGKLTKLRLLDLTNCFHLKVIAANL 418 (775)
Q Consensus 344 ~lp-~~i~~l~~L~~L~L~~~~l~~-p~-~i~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~l~~~p~~~ 418 (775)
.+| ..++++++|++|++++|.++. ++ .++++++|++|++++|.++. +|..++++++|++|++++| .+..++...
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~ 168 (570)
T 2z63_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTD 168 (570)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGG
T ss_pred ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHH
Confidence 765 789999999999999999988 33 59999999999999998884 7999999999999999998 455665545
Q ss_pred hhccccc----cEEEcCCCcccceecccCCcc------------------------------------------------
Q 042822 419 IASFTRL----EELYMSNCFVEWKVEDEGSSS------------------------------------------------ 446 (775)
Q Consensus 419 l~~L~~L----~~L~l~~~~~~~~~~~~~~~~------------------------------------------------ 446 (775)
++.+++| ++|++++|.+....++.-...
T Consensus 169 ~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~ 248 (570)
T 2z63_A 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248 (570)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCT
T ss_pred ccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcch
Confidence 8888888 889999887665433210000
Q ss_pred --------------------ccccccccccCCCCCCCEEEEEeeCCCCCCCccccccccceEEEecCCCCCCcccccccc
Q 042822 447 --------------------KRSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDW 506 (775)
Q Consensus 447 --------------------~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~~~ 506 (775)
.........+..+++|+.|+++++....+|.++...+|+.|++..+....+|..
T Consensus 249 ~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~------ 322 (570)
T 2z63_A 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL------ 322 (570)
T ss_dssp TTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBC------
T ss_pred hhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcc------
Confidence 001112233455677777777777766777665222777777776665433321
Q ss_pred ccccccccccccccccceEEEeccCcccccccccccccceEEeecccCCcccccccccccccccCcEEEeecCCCccccc
Q 042822 507 FRISRSHFLILDHQSLRMLKLKLNCKTICSRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIV 586 (775)
Q Consensus 507 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 586 (775)
.+++|+.|++.++........ ..+++|++|++++|..............+++|+.|++++|. +..+.
T Consensus 323 -----------~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~ 389 (570)
T 2z63_A 323 -----------KLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMS 389 (570)
T ss_dssp -----------BCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEE
T ss_pred -----------cccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCc-ccccc
Confidence 166777777776544332222 46677777777766432211001112346777777777664 22221
Q ss_pred cCCCcccCCcccccceeecccccccccccccccCcccccCCCeEEeccCCCCCccccchhhcCCCCccEEEEecccchHH
Q 042822 587 DSREIVDCDAFPLLELLSLQNLINLKTICVDRLSTESFAELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKE 666 (775)
Q Consensus 587 ~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~~L~~ 666 (775)
. ....+++|+.|++.++.-....+ ......+++|++|++++|.-....+. .+..+++|++|++.+|.-...
T Consensus 390 ~-----~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~ 460 (570)
T 2z63_A 390 S-----NFLGLEQLEHLDFQHSNLKQMSE--FSVFLSLRNLIYLDISHTHTRVAFNG--IFNGLSSLEVLKMAGNSFQEN 460 (570)
T ss_dssp E-----EEETCTTCCEEECTTSEEESCTT--SCTTTTCTTCCEEECTTSCCEECCTT--TTTTCTTCCEEECTTCEEGGG
T ss_pred c-----cccccCCCCEEEccCCccccccc--hhhhhcCCCCCEEeCcCCcccccchh--hhhcCCcCcEEECcCCcCccc
Confidence 1 13456677777777654222111 12235567777777777643222222 456677777777766652211
Q ss_pred HhhccCCCCcccCCCCCCccccccccCeEecCCC
Q 042822 667 IFAIGGEEPDVADNSNANEKIEFAQIRYLSLGNL 700 (775)
Q Consensus 667 l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 700 (775)
. .|.....+++|+.|++++|
T Consensus 461 ~--------------~p~~~~~l~~L~~L~l~~n 480 (570)
T 2z63_A 461 F--------------LPDIFTELRNLTFLDLSQC 480 (570)
T ss_dssp E--------------ECSCCTTCTTCCEEECTTS
T ss_pred c--------------chhhhhcccCCCEEECCCC
Confidence 1 1444455677777777776
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=3.7e-29 Score=286.68 Aligned_cols=452 Identities=14% Similarity=0.074 Sum_probs=274.6
Q ss_pred eEEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCC-CcccccccCccEEEcCC
Q 042822 284 YAISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSL-PSSIDLLLNLRTLCLDH 362 (775)
Q Consensus 284 ~~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~ 362 (775)
+.++..++++..+|..+. +++++|++++|.+. .++...|.++++|++|++++|.++.+ |..++++++|++|++++
T Consensus 14 ~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPLK---ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89 (606)
T ss_dssp TEEECTTSCCSSCCTTSC-TTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CceEccCCCcccCCCCCC-CCcCEEECCCCCcC---EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCC
Confidence 467777778889998664 88999999999987 56766679999999999999999976 67899999999999999
Q ss_pred CCCCC--ccccccCCcccEEEecCCCCcccc-hhhhccCCCCEecccCCcccc-ccchHHhhccccccEEEcCCCcccce
Q 042822 363 GTLGD--ITIIGELKNLEILSLIGSDIVEFP-EELGKLTKLRLLDLTNCFHLK-VIAANLIASFTRLEELYMSNCFVEWK 438 (775)
Q Consensus 363 ~~l~~--p~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~-~~p~~~l~~L~~L~~L~l~~~~~~~~ 438 (775)
|.+.. |..++++++|++|++++|.++.+| ..++++++|++|++++|...+ .+|.. ++++++|++|++++|.+...
T Consensus 90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEE
T ss_pred CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceec
Confidence 99987 678999999999999999999877 679999999999999985433 46777 99999999999999988754
Q ss_pred ecccCCccccccccccccCCCCC-CCEEEEEeeCCCCCCCcc-ccccccceEEEecCCC---------------------
Q 042822 439 VEDEGSSSKRSKASLDELMPLPR-LTTLEIAVENDNALPEGF-FVRELERFKILIGDRS--------------------- 495 (775)
Q Consensus 439 ~~~~~~~~~~~~~~l~~l~~l~~-L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~--------------------- 495 (775)
.+ ..+..+.+++. +..|+++.|....++... ...+|+.|++..+...
T Consensus 169 ~~----------~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~ 238 (606)
T 3vq2_A 169 TV----------NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL 238 (606)
T ss_dssp CT----------TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEE
T ss_pred Ch----------hhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccc
Confidence 43 11122222222 335555555554444332 2224444444433211
Q ss_pred ----CCCccc---ccc---------------ccccccccccccccccccceEEEeccCcccccccccccccceEEeeccc
Q 042822 496 ----FEPPVI---LSK---------------DWFRISRSHFLILDHQSLRMLKLKLNCKTICSRKLQGIRKVEYLCLDKF 553 (775)
Q Consensus 496 ----~l~~l~---~~~---------------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~ 553 (775)
....+. ..+ ...........+..+++|+.|++.++.....| ++..+++|++|++++|
T Consensus 239 ~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n 317 (606)
T 3vq2_A 239 GEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRC 317 (606)
T ss_dssp ECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESC
T ss_pred cccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccc
Confidence 100000 000 00000000011344778888888887766666 6777888888888888
Q ss_pred CCcccccccccccccccCcEEEeecCCCccccccCCCcccCCcccccceeecccccccccccccccCcccccCCCeEEec
Q 042822 554 QGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKTICVDRLSTESFAELRTMKVE 633 (775)
Q Consensus 554 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~ 633 (775)
.. +.++ .+ .+++|+.|+++++..+..+ ....+++|+.|+++++. +..+...+.....+++|++|+++
T Consensus 318 ~l-~~lp-~~---~l~~L~~L~l~~n~~~~~~-------~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~ 384 (606)
T 3vq2_A 318 QL-KQFP-TL---DLPFLKSLTLTMNKGSISF-------KKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLS 384 (606)
T ss_dssp CC-SSCC-CC---CCSSCCEEEEESCSSCEEC-------CCCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECC
T ss_pred cC-cccc-cC---CCCccceeeccCCcCccch-------hhccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECC
Confidence 65 5554 22 5788888888887544432 33456677777776653 22221112223345556666665
Q ss_pred cCCCCCccccchhhcCCCCccEEEEecccchHHHhhcc-CCC---Cc------ccCCCCCCccccccccCeEecCCCCCc
Q 042822 634 NCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIG-GEE---PD------VADNSNANEKIEFAQIRYLSLGNLPEL 703 (775)
Q Consensus 634 ~C~~L~~l~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~-~~~---~~------~~~~~~~~~~~~~~~L~~L~l~~c~~L 703 (775)
+|. ++.+|. .+..+++|+.|++.+|.-........ ... .. ......+.....+++|++|++++|.--
T Consensus 385 ~n~-l~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 461 (606)
T 3vq2_A 385 FNG-AIIMSA--NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461 (606)
T ss_dssp SCS-EEEECC--CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred CCc-cccchh--hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCC
Confidence 543 444432 44455555555554443111100000 000 00 000001334455677777777766332
Q ss_pred cc-cccCCCCCCCCCCccccccccccc-CCCcceeecCCCCCccccccceeeeccccch-hhhhcccceeecccC
Q 042822 704 KS-FFCELRGPSMSPNRRETQEGLTAS-TGDSEIIVEDMPDTWTSLFNEKRLWSCVKLM-PKVFGTIKLLVAFNV 775 (775)
Q Consensus 704 ~~-l~~~~~~~~~~~~~l~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~~~~~p~l~~~-p~~~~~L~~L~~~~~ 775 (775)
.. ++.. .. ..+.+ ..+... +...++ ....+..+..+....++.++++++ |..+.++++|..+++
T Consensus 462 ~~~~~~~--~~--~l~~L---~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 528 (606)
T 3vq2_A 462 DNTLSNV--FA--NTTNL---TFLDLSKCQLEQI-SWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528 (606)
T ss_dssp GGEECSC--CT--TCTTC---CEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred CcchHHh--hc--cCCCC---CEEECCCCcCCcc-ChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence 21 2211 11 11122 112212 222222 223345567778888888999888 899999988888765
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=2.7e-29 Score=294.41 Aligned_cols=420 Identities=18% Similarity=0.092 Sum_probs=308.7
Q ss_pred ccccceeEEEEEcCCCC-CCCCCC-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCC-CCCcccccc-c
Q 042822 278 DALKKCYAISWIDSSGG-ELPEGL-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLF-SLPSSIDLL-L 353 (775)
Q Consensus 278 ~~~~~~~~l~l~~~~~~-~lp~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l-~ 353 (775)
...+++++|++.+|.+. .+|..+ .+++|++|++++|.... .+|. ..+++|++|++++|.+. .+|..++.+ +
T Consensus 220 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~---~~l~~L~~L~L~~n~l~~~ip~~~~~~~~ 294 (768)
T 3rgz_A 220 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG--PIPP---LPLKSLQYLSLAENKFTGEIPDFLSGACD 294 (768)
T ss_dssp TTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEE--SCCC---CCCTTCCEEECCSSEEEESCCCCSCTTCT
T ss_pred ccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccC--ccCc---cccCCCCEEECcCCccCCccCHHHHhhcC
Confidence 44678999999999886 445544 89999999999998764 4554 27899999999999998 889888775 9
Q ss_pred CccEEEcCCCCCCC--ccccccCCcccEEEecCCCCc-ccchh-hhccCCCCEecccCCccccccchHHhhccc-cccEE
Q 042822 354 NLRTLCLDHGTLGD--ITIIGELKNLEILSLIGSDIV-EFPEE-LGKLTKLRLLDLTNCFHLKVIAANLIASFT-RLEEL 428 (775)
Q Consensus 354 ~L~~L~L~~~~l~~--p~~i~~l~~L~~L~l~~~~l~-~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~-~L~~L 428 (775)
+|++|++++|.+.. |..++++++|++|++++|.++ .+|.. ++++++|++|++++|...+.+|.. +++++ +|++|
T Consensus 295 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~~L~~L 373 (768)
T 3rgz_A 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES-LTNLSASLLTL 373 (768)
T ss_dssp TCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT-HHHHTTTCSEE
T ss_pred cCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH-HHhhhcCCcEE
Confidence 99999999999875 788999999999999999888 88876 899999999999999655678887 88887 99999
Q ss_pred EcCCCcccceecccCCccccccccccccCC--CCCCCEEEEEeeCCC-CCCCcc-ccccccceEEEecCCCCCCcccccc
Q 042822 429 YMSNCFVEWKVEDEGSSSKRSKASLDELMP--LPRLTTLEIAVENDN-ALPEGF-FVRELERFKILIGDRSFEPPVILSK 504 (775)
Q Consensus 429 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~l~~l~~~~ 504 (775)
++++|.+.+..+ ..+.. +++|+.|++++|... .+|..+ .+++|+.|++..+......
T Consensus 374 ~Ls~N~l~~~~~-------------~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~------ 434 (768)
T 3rgz_A 374 DLSSNNFSGPIL-------------PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI------ 434 (768)
T ss_dssp ECCSSEEEEECC-------------TTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCC------
T ss_pred EccCCCcCCCcC-------------hhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcc------
Confidence 999998876555 44444 788999999988765 556655 5688888888766533211
Q ss_pred ccccccccccccccccccceEEEeccCcc-cccccccccccceEEeecccCCcccccccccccccccCcEEEeecCCCcc
Q 042822 505 DWFRISRSHFLILDHQSLRMLKLKLNCKT-ICSRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLL 583 (775)
Q Consensus 505 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 583 (775)
+..+..+++|+.|+++++... ..|..+..+++|++|++++|......+.. ...+++|+.|++++|.-..
T Consensus 435 --------p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~--l~~l~~L~~L~L~~N~l~~ 504 (768)
T 3rgz_A 435 --------PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG--LSNCTNLNWISLSNNRLTG 504 (768)
T ss_dssp --------CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG--GGGCTTCCEEECCSSCCCS
T ss_pred --------cHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH--HhcCCCCCEEEccCCccCC
Confidence 112334889999999987655 56777889999999999998765555544 3558999999999987322
Q ss_pred ccccCCCcccCCcccccceeecccccccccccccccCcccccCCCeEEeccCCCCCccccch------------------
Q 042822 584 FIVDSREIVDCDAFPLLELLSLQNLINLKTICVDRLSTESFAELRTMKVENCDELSNIFVLS------------------ 645 (775)
Q Consensus 584 ~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~------------------ 645 (775)
.+ ....+.+++|+.|+++++.-...+ |.....+++|+.|++++|+-...+|..-
T Consensus 505 ~~-----p~~~~~l~~L~~L~L~~N~l~~~~---p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~ 576 (768)
T 3rgz_A 505 EI-----PKWIGRLENLAILKLSNNSFSGNI---PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 576 (768)
T ss_dssp CC-----CGGGGGCTTCCEEECCSSCCEEEC---CGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEE
T ss_pred cC-----ChHHhcCCCCCEEECCCCcccCcC---CHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccc
Confidence 22 224567899999999998765566 4556789999999999886544444310
Q ss_pred --------------------------------------------------hhcCCCCccEEEEecccchHHHhhccCCCC
Q 042822 646 --------------------------------------------------TTKCLPSLQRIAVIKCNKMKEIFAIGGEEP 675 (775)
Q Consensus 646 --------------------------------------------------~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~ 675 (775)
.+..+++|+.|+++++. ++..
T Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~-l~g~-------- 647 (768)
T 3rgz_A 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM-LSGY-------- 647 (768)
T ss_dssp EEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSC-CBSC--------
T ss_pred ccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCc-cccc--------
Confidence 12335667777776553 2211
Q ss_pred cccCCCCCCccccccccCeEecCCCCCccccccCCCCCCCCCCccccccccc-ccCCCcceeecCCCCCccccccceeee
Q 042822 676 DVADNSNANEKIEFAQIRYLSLGNLPELKSFFCELRGPSMSPNRRETQEGLT-ASTGDSEIIVEDMPDTWTSLFNEKRLW 754 (775)
Q Consensus 676 ~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~~~~~ 754 (775)
.|..+..+++|+.|+|+++.--..+|.. ...+.. + ..+- ..+.+.+.++.. +...+.+...+++.
T Consensus 648 ------ip~~l~~l~~L~~L~Ls~N~l~g~ip~~--l~~L~~--L---~~LdLs~N~l~g~ip~~-l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 648 ------IPKEIGSMPYLFILNLGHNDISGSIPDE--VGDLRG--L---NILDLSSNKLDGRIPQA-MSALTMLTEIDLSN 713 (768)
T ss_dssp ------CCGGGGGCTTCCEEECCSSCCCSCCCGG--GGGCTT--C---CEEECCSSCCEECCCGG-GGGCCCCSEEECCS
T ss_pred ------CCHHHhccccCCEEeCcCCccCCCCChH--HhCCCC--C---CEEECCCCcccCcCChH-HhCCCCCCEEECcC
Confidence 3777888999999999998655566643 111111 1 1111 344555555543 34456677888999
Q ss_pred ccccch-hhh
Q 042822 755 SCVKLM-PKV 763 (775)
Q Consensus 755 p~l~~~-p~~ 763 (775)
++|++. |..
T Consensus 714 N~l~g~iP~~ 723 (768)
T 3rgz_A 714 NNLSGPIPEM 723 (768)
T ss_dssp SEEEEECCSS
T ss_pred CcccccCCCc
Confidence 999886 643
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=8.5e-29 Score=287.68 Aligned_cols=378 Identities=13% Similarity=0.143 Sum_probs=283.7
Q ss_pred cceeEEEEEcCCC-CCCCCCC-CCCCccEEEc-ccCCCCCc---------------------------------------
Q 042822 281 KKCYAISWIDSSG-GELPEGL-ECPQLELLLL-SSKHSSVD--------------------------------------- 318 (775)
Q Consensus 281 ~~~~~l~l~~~~~-~~lp~~~-~~~~Lr~L~l-~~~~~~~~--------------------------------------- 318 (775)
.++..|++.++.+ +.+|+.+ .+++|++|++ ++|...+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 6799999999887 5788777 9999999999 65532110
Q ss_pred -----------------------------------cccChhhhhCCCcccEEEecCCCCCC------------------C
Q 042822 319 -----------------------------------VNIPRSFFTGMRELKVVDLTNMQLFS------------------L 345 (775)
Q Consensus 319 -----------------------------------~~l~~~~~~~l~~L~~L~l~~~~~~~------------------l 345 (775)
..+|.. |.++++|++|+|++|.++. +
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 016665 5899999999999999998 9
Q ss_pred Ccccc--cccCccEEEcCCCCCCC--ccccccCCcccEEEecCCC-Ccc--cchhhhccC-------CCCEecccCCccc
Q 042822 346 PSSID--LLLNLRTLCLDHGTLGD--ITIIGELKNLEILSLIGSD-IVE--FPEELGKLT-------KLRLLDLTNCFHL 411 (775)
Q Consensus 346 p~~i~--~l~~L~~L~L~~~~l~~--p~~i~~l~~L~~L~l~~~~-l~~--lp~~i~~l~-------~L~~L~l~~~~~l 411 (775)
|+.++ ++++|++|++++|.+.. |..++++++|++|++++|+ ++. +|..++++. +|++|++++| .+
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L 560 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NL 560 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cC
Confidence 99988 99999999999998765 8889999999999999997 884 999888877 9999999998 45
Q ss_pred cccch--HHhhccccccEEEcCCCcccceecccCCccccccccccccCCCCCCCEEEEEeeCCCCCCCcc-cccc-ccce
Q 042822 412 KVIAA--NLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPEGF-FVRE-LERF 487 (775)
Q Consensus 412 ~~~p~--~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~-L~~L 487 (775)
..+|. . ++++++|++|++++|.+. .+ ..++.+++|+.|++++|.+..+|..+ .+++ |+.|
T Consensus 561 ~~ip~~~~-l~~L~~L~~L~Ls~N~l~-~l--------------p~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L 624 (876)
T 4ecn_A 561 EEFPASAS-LQKMVKLGLLDCVHNKVR-HL--------------EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGL 624 (876)
T ss_dssp CBCCCHHH-HTTCTTCCEEECTTSCCC-BC--------------CCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEE
T ss_pred CccCChhh-hhcCCCCCEEECCCCCcc-cc--------------hhhcCCCcceEEECcCCccccchHHHhhccccCCEE
Confidence 68998 6 999999999999999876 22 26888999999999999988888766 5677 9999
Q ss_pred EEEecCCCCCCccccccccccccccccccccccccceEEEeccCcccccc----ccc--ccccceEEeecccCCcccccc
Q 042822 488 KILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNCKTICSR----KLQ--GIRKVEYLCLDKFQGVKNILF 561 (775)
Q Consensus 488 ~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~l~--~l~~L~~L~l~~~~~~~~~~~ 561 (775)
++..+.+..+|... .. ...++|+.|+++++.....++ .+. .+++|+.|++++|... .++.
T Consensus 625 ~Ls~N~L~~lp~~~---~~----------~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~ 690 (876)
T 4ecn_A 625 GFSHNKLKYIPNIF---NA----------KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPT 690 (876)
T ss_dssp ECCSSCCCSCCSCC---CT----------TCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCH
T ss_pred ECcCCCCCcCchhh---hc----------cccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCH
Confidence 99887765444211 10 113459999999876544332 222 4568999999988644 4443
Q ss_pred cccccccccCcEEEeecCCCccccccCCCccc---CCcccccceeecccccccccccccccCcc--cccCCCeEEeccCC
Q 042822 562 ELDTQGFSQLKHLLVQNNPDLLFIVDSREIVD---CDAFPLLELLSLQNLINLKTICVDRLSTE--SFAELRTMKVENCD 636 (775)
Q Consensus 562 ~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~---~~~~p~L~~L~l~~~~~l~~~~~~~~~~~--~~~~L~~L~l~~C~ 636 (775)
.. ...+++|+.|+++++. +..+........ ...+++|+.|+++++ .+..+ +.... .+++|+.|++++|
T Consensus 691 ~~-~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~l---p~~l~~~~l~~L~~L~Ls~N- 763 (876)
T 4ecn_A 691 EL-FATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSL---SDDFRATTLPYLSNMDVSYN- 763 (876)
T ss_dssp HH-HHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCC---CGGGSTTTCTTCCEEECCSS-
T ss_pred HH-HccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCC-CCccc---hHHhhhccCCCcCEEEeCCC-
Confidence 22 2357899999999874 444422111111 223459999999987 56666 33343 7899999999996
Q ss_pred CCCccccchhhcCCCCccEEEEecccchHHHhhccCCCCcccCCCCCCccccccccCeEecCCCCCccccccC
Q 042822 637 ELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVADNSNANEKIEFAQIRYLSLGNLPELKSFFCE 709 (775)
Q Consensus 637 ~L~~l~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~ 709 (775)
.++.+|. .+..+++|+.|++++++.+..- .. ....|..+..+++|+.|+|++|.- ..+|..
T Consensus 764 ~L~~lp~--~l~~L~~L~~L~Ls~N~~ls~N-----~l----~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~ 824 (876)
T 4ecn_A 764 CFSSFPT--QPLNSSQLKAFGIRHQRDAEGN-----RI----LRQWPTGITTCPSLIQLQIGSNDI-RKVDEK 824 (876)
T ss_dssp CCSSCCC--GGGGCTTCCEEECCCCBCTTCC-----BC----CCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred CCCccch--hhhcCCCCCEEECCCCCCcccc-----cc----cccChHHHhcCCCCCEEECCCCCC-CccCHh
Confidence 6667766 6778999999999886522110 00 111366778899999999999854 888754
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=6.6e-28 Score=276.32 Aligned_cols=458 Identities=16% Similarity=0.080 Sum_probs=274.5
Q ss_pred eEEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCC-CcccccccCccEEEcCC
Q 042822 284 YAISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSL-PSSIDLLLNLRTLCLDH 362 (775)
Q Consensus 284 ~~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~ 362 (775)
+.++..+.++..+|..+. +++++|++++|.+. .+++..|.++++|++|++++|.+..+ |..|+++++|++|++++
T Consensus 15 ~~~~c~~~~l~~iP~~l~-~~l~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTLP-NSTECLEFSFNVLP---TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90 (606)
T ss_dssp TEEECTTSCCSSCCTTSC-TTCCEEECTTCCCS---EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ceEECCCCCcccCcCCCC-CcCcEEEccCCccC---cCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCC
Confidence 355666667788887662 47999999999987 56666679999999999999999955 78899999999999999
Q ss_pred CCCCC--ccccccCCcccEEEecCCCCccc-chhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCccccee
Q 042822 363 GTLGD--ITIIGELKNLEILSLIGSDIVEF-PEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKV 439 (775)
Q Consensus 363 ~~l~~--p~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~ 439 (775)
|.+.. |..++++++|++|++++|.++.+ |..++++++|++|++++| .+..++...+..+++|++|++++|.+....
T Consensus 91 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 169 (606)
T 3t6q_A 91 NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIHYLS 169 (606)
T ss_dssp CCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCCCEEC
T ss_pred CcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccCcccccC
Confidence 99987 67899999999999999999987 567999999999999998 455543212556999999999999887444
Q ss_pred cccCCccccccccccccCCCCCCC--EEEEEeeCCCCCCCcc-ccccccceEEEecC---------------------CC
Q 042822 440 EDEGSSSKRSKASLDELMPLPRLT--TLEIAVENDNALPEGF-FVRELERFKILIGD---------------------RS 495 (775)
Q Consensus 440 ~~~~~~~~~~~~~l~~l~~l~~L~--~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~---------------------~~ 495 (775)
+ ..++.+++|+ .|++++|....++... ...+|+.+++..+. ..
T Consensus 170 ~-------------~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~ 236 (606)
T 3t6q_A 170 K-------------EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE 236 (606)
T ss_dssp H-------------HHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCT
T ss_pred h-------------hhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhc
Confidence 3 5677778888 6777777666554432 22334433332111 00
Q ss_pred CCC--cccc-cccc-----------cc---ccccccccccccccceEEEeccCcccccccccccccceEEeecccCCccc
Q 042822 496 FEP--PVIL-SKDW-----------FR---ISRSHFLILDHQSLRMLKLKLNCKTICSRKLQGIRKVEYLCLDKFQGVKN 558 (775)
Q Consensus 496 ~l~--~l~~-~~~~-----------~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 558 (775)
... .++. .+.. .. .......+..+++|+.|+++++.....|.++..+++|++|++++|.....
T Consensus 237 ~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~ 316 (606)
T 3t6q_A 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL 316 (606)
T ss_dssp TSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBG
T ss_pred cccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcC
Confidence 000 0000 0000 00 00111123447788888888877777788888888888888888754332
Q ss_pred ccccccccccccCcEEEeecCCCccccccCCCcccCCcccccceeecccccccccccccccCcccccCCCeEEeccCCCC
Q 042822 559 ILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKTICVDRLSTESFAELRTMKVENCDEL 638 (775)
Q Consensus 559 ~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L 638 (775)
.+. ....+++|+.|+++++.....+.. .....+++|+.|+++++. +..+...+.....+++|++|++++|. +
T Consensus 317 ~~~--~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~-l 388 (606)
T 3t6q_A 317 CQI--SASNFPSLTHLSIKGNTKRLELGT----GCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNE-P 388 (606)
T ss_dssp GGG--CGGGCTTCSEEECCSCSSCCBCCS----STTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCS-C
T ss_pred chh--hhhccCcCCEEECCCCCcccccch----hhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCc-C
Confidence 222 234578888888877753222211 123456677777776653 33221112334556666666666652 3
Q ss_pred CccccchhhcCCCCccEEEEecccchHHHhhc--cC--CCCc------ccCCCCCCccccccccCeEecCCCCCccc-cc
Q 042822 639 SNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAI--GG--EEPD------VADNSNANEKIEFAQIRYLSLGNLPELKS-FF 707 (775)
Q Consensus 639 ~~l~~~~~~~~l~~L~~L~l~~C~~L~~l~~~--~~--~~~~------~~~~~~~~~~~~~~~L~~L~l~~c~~L~~-l~ 707 (775)
+.+++ ..+..+++|++|++.+|.--...+.. .. .... ......+.....+++|++|++++|+--.. ++
T Consensus 389 ~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 467 (606)
T 3t6q_A 389 LSLKT-EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467 (606)
T ss_dssp EEECT-TTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEEC
T ss_pred CcCCH-HHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccc
Confidence 33322 24455666666666554321110000 00 0000 00000133344566666666666632110 11
Q ss_pred cCCCCCCCCCCccccccccccc-CCCcceeecCCCCCccccccceeeeccccch-hhhhcccceeecccC
Q 042822 708 CELRGPSMSPNRRETQEGLTAS-TGDSEIIVEDMPDTWTSLFNEKRLWSCVKLM-PKVFGTIKLLVAFNV 775 (775)
Q Consensus 708 ~~~~~~~~~~~~l~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~~~~~p~l~~~-p~~~~~L~~L~~~~~ 775 (775)
...... ..+.+ ..+... +...++ ....+..+..+...+++.+++++. |..+.+++.| .+|+
T Consensus 468 ~~~~~~--~l~~L---~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L 530 (606)
T 3t6q_A 468 KTNSLQ--TLGRL---EILVLSFCDLSSI-DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNL 530 (606)
T ss_dssp SSCGGG--GCTTC---CEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEEC
T ss_pred cchhhc--cCCCc---cEEECCCCccCcc-ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEEC
Confidence 000000 01111 112112 222222 223345566777788888888887 8888888888 6654
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=5.1e-28 Score=273.81 Aligned_cols=430 Identities=15% Similarity=0.135 Sum_probs=217.4
Q ss_pred ccceeEEEEEcCCCCCCCC-CC-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcc-cccccCcc
Q 042822 280 LKKCYAISWIDSSGGELPE-GL-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSS-IDLLLNLR 356 (775)
Q Consensus 280 ~~~~~~l~l~~~~~~~lp~-~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~ 356 (775)
.+++++|++++|.+..+++ .+ .+++|++|++++|.+. .++.+.|..+++|++|++++|.+..+|.. ++++++|+
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 101 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN---TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK 101 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCC
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC---ccChhhccccccCCEEECCCCccCccCHHHhccCCCCc
Confidence 3566777776666665543 22 6667777777766655 34444456667777777777766665544 66677777
Q ss_pred EEEcCCCCCCC---ccccccCCcccEEEecCCC-Ccccc-hhhhccCCCCEecccCCccccccchHHhhccccccEEEcC
Q 042822 357 TLCLDHGTLGD---ITIIGELKNLEILSLIGSD-IVEFP-EELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMS 431 (775)
Q Consensus 357 ~L~L~~~~l~~---p~~i~~l~~L~~L~l~~~~-l~~lp-~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~ 431 (775)
+|++++|.+.. |..++++++|++|++++|. +..+| ..++++++|++|++++|...+..|.. ++++++|++|+++
T Consensus 102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~ 180 (549)
T 2z81_A 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLH 180 (549)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEE
T ss_pred EEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEecc
Confidence 77777766653 3556666777777776665 45555 35666677777777666433334444 6666677777666
Q ss_pred CCcccceecccCCccccccccccccCCCCCCCEEEEEeeCCCCCC---Ccc--ccccccceEEEecCCCCCCcccccccc
Q 042822 432 NCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALP---EGF--FVRELERFKILIGDRSFEPPVILSKDW 506 (775)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~---~~~--~~~~L~~L~l~~~~~~~l~~l~~~~~~ 506 (775)
+|....... ..+..+++|+.|++++|....++ ..+ ...+|+.|++..+.....
T Consensus 181 ~n~~~~~~~-------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--------- 238 (549)
T 2z81_A 181 LSESAFLLE-------------IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE--------- 238 (549)
T ss_dssp CSBSTTHHH-------------HHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHH---------
T ss_pred cCcccccch-------------hhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchh---------
Confidence 655431100 11234666777777766655432 111 345566666554321100
Q ss_pred ccccccccccccccccceEEEeccCccccc-------ccccccccceEEeecccCC------------------------
Q 042822 507 FRISRSHFLILDHQSLRMLKLKLNCKTICS-------RKLQGIRKVEYLCLDKFQG------------------------ 555 (775)
Q Consensus 507 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-------~~l~~l~~L~~L~l~~~~~------------------------ 555 (775)
........+..+++|+.+++.++.....+ ..+..+++|+.|.+.++..
T Consensus 239 -~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l 317 (549)
T 2z81_A 239 -SFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317 (549)
T ss_dssp -HHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEE
T ss_pred -HHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEe
Confidence 00000011123567777777764332211 1112344444444443321
Q ss_pred ----cccccccccccccccCcEEEeecCCCccccccCCCcccCCcccccceeecccccccccccccccCcccccCCCeEE
Q 042822 556 ----VKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKTICVDRLSTESFAELRTMK 631 (775)
Q Consensus 556 ----~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~ 631 (775)
+..++..+ ...+++|+.|+++++.-...+... ....+.+++|+.|+++++ .++.++........+++|++|+
T Consensus 318 ~~n~l~~ip~~~-~~~l~~L~~L~Ls~N~l~~~~~~~--~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~ 393 (549)
T 2z81_A 318 ENSKVFLVPCSF-SQHLKSLEFLDLSENLMVEEYLKN--SACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLD 393 (549)
T ss_dssp ESSCCCCCCHHH-HHHCTTCCEEECCSSCCCHHHHHH--HTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEE
T ss_pred ccCccccCCHHH-HhcCccccEEEccCCccccccccc--hhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEE
Confidence 12222111 123555666666555422111000 001344566666666654 2333311111234456666666
Q ss_pred eccCCCCCccccchhhcCCCCccEEEEecccchHHHhhccCCCCcccCCCCCCccccccccCeEecCCCCCccccccCCC
Q 042822 632 VENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVADNSNANEKIEFAQIRYLSLGNLPELKSFFCELR 711 (775)
Q Consensus 632 l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~ 711 (775)
+++| +++.+|. .+..+++|++|++++|. ++.+ +. ..+++|+.|++++| +++.++.
T Consensus 394 Ls~N-~l~~lp~--~~~~~~~L~~L~Ls~N~-l~~l---------------~~--~~~~~L~~L~Ls~N-~l~~~~~--- 448 (549)
T 2z81_A 394 ISRN-TFHPMPD--SCQWPEKMRFLNLSSTG-IRVV---------------KT--CIPQTLEVLDVSNN-NLDSFSL--- 448 (549)
T ss_dssp CTTC-CCCCCCS--CCCCCTTCCEEECTTSC-CSCC---------------CT--TSCTTCSEEECCSS-CCSCCCC---
T ss_pred CCCC-CCccCCh--hhcccccccEEECCCCC-cccc---------------cc--hhcCCceEEECCCC-Chhhhcc---
Confidence 6665 4555554 44556666666665554 2222 11 11245666666655 3333321
Q ss_pred CCCCCCCccccccccc-ccCCCcceeecCCCCCccccccceeeeccccch-hhhhcccceeecccC
Q 042822 712 GPSMSPNRRETQEGLT-ASTGDSEIIVEDMPDTWTSLFNEKRLWSCVKLM-PKVFGTIKLLVAFNV 775 (775)
Q Consensus 712 ~~~~~~~~l~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~~~~~p~l~~~-p~~~~~L~~L~~~~~ 775 (775)
..+.+ ..+. ..+.+. .++.. .....+...+++.++++++ |..+.++++|..+++
T Consensus 449 ----~l~~L---~~L~Ls~N~l~-~ip~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 504 (549)
T 2z81_A 449 ----FLPRL---QELYISRNKLK-TLPDA--SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWL 504 (549)
T ss_dssp ----CCTTC---CEEECCSSCCS-SCCCG--GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEEC
T ss_pred ----cCChh---cEEECCCCccC-cCCCc--ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEe
Confidence 11122 1111 112222 22221 2345566777888888888 666888888877764
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=5.8e-28 Score=276.48 Aligned_cols=378 Identities=13% Similarity=0.132 Sum_probs=274.8
Q ss_pred cceeEEEEEcCCC-CCCCCCC-CCCCccEEEcccCCC-------------------------------------------
Q 042822 281 KKCYAISWIDSSG-GELPEGL-ECPQLELLLLSSKHS------------------------------------------- 315 (775)
Q Consensus 281 ~~~~~l~l~~~~~-~~lp~~~-~~~~Lr~L~l~~~~~------------------------------------------- 315 (775)
.+++.|++.++.+ +.+|+.+ .+++|++|++++|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 5799999988887 5678766 899999999998843
Q ss_pred ---------------------------------CCccccChhhhhCCCcccEEEecCCCCCC------------------
Q 042822 316 ---------------------------------SVDVNIPRSFFTGMRELKVVDLTNMQLFS------------------ 344 (775)
Q Consensus 316 ---------------------------------~~~~~l~~~~~~~l~~L~~L~l~~~~~~~------------------ 344 (775)
... .+|.. ++++++|++|++++|.++.
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~-~ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEE-EECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCc-cCCHH-HhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 111 26665 5899999999999999997
Q ss_pred CCcccc--cccCccEEEcCCCCCCC--ccccccCCcccEEEecCCC-Cc--ccchhhhcc------CCCCEecccCCccc
Q 042822 345 LPSSID--LLLNLRTLCLDHGTLGD--ITIIGELKNLEILSLIGSD-IV--EFPEELGKL------TKLRLLDLTNCFHL 411 (775)
Q Consensus 345 lp~~i~--~l~~L~~L~L~~~~l~~--p~~i~~l~~L~~L~l~~~~-l~--~lp~~i~~l------~~L~~L~l~~~~~l 411 (775)
+|..++ ++++|++|++++|.+.. |..++++++|++|++++|. ++ .+|..++++ ++|++|++++| .+
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NL 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cC
Confidence 999999 99999999999999766 8889999999999999997 88 499999887 99999999998 55
Q ss_pred cccch--HHhhccccccEEEcCCCcccceecccCCccccccccccccCCCCCCCEEEEEeeCCCCCCCcc-cccc-ccce
Q 042822 412 KVIAA--NLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPEGF-FVRE-LERF 487 (775)
Q Consensus 412 ~~~p~--~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~-L~~L 487 (775)
..+|. . ++++++|++|++++|.+.+.+| .++.+++|+.|++++|.+..+|..+ .+++ |+.|
T Consensus 318 ~~ip~~~~-l~~l~~L~~L~L~~N~l~g~ip--------------~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L 382 (636)
T 4eco_A 318 KTFPVETS-LQKMKKLGMLECLYNQLEGKLP--------------AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENL 382 (636)
T ss_dssp SSCCCHHH-HTTCTTCCEEECCSCCCEEECC--------------CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEE
T ss_pred CccCchhh-hccCCCCCEEeCcCCcCccchh--------------hhCCCCCCCEEECCCCccccccHhhhhhcccCcEE
Confidence 68988 6 9999999999999998874443 5677788889999888877888766 5566 8888
Q ss_pred EEEecCCCCCCccccccccccccccccccccccccceEEEeccCccc-cccccc-------ccccceEEeecccCCcccc
Q 042822 488 KILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNCKTI-CSRKLQ-------GIRKVEYLCLDKFQGVKNI 559 (775)
Q Consensus 488 ~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~l~-------~l~~L~~L~l~~~~~~~~~ 559 (775)
++..+....+|.... . ..+++|+.|+++++.... .|.++. .+++|++|++++|... .+
T Consensus 383 ~Ls~N~l~~lp~~~~---~----------~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~l 448 (636)
T 4eco_A 383 SFAHNKLKYIPNIFD---A----------KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KF 448 (636)
T ss_dssp ECCSSCCSSCCSCCC---T----------TCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SC
T ss_pred EccCCcCcccchhhh---h----------cccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cC
Confidence 887776554442111 0 114478888888865433 445555 6678889998887643 34
Q ss_pred cccccccccccCcEEEeecCCCccccccCCCccc---CCcccccceeecccccccccccccccCcc--cccCCCeEEecc
Q 042822 560 LFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVD---CDAFPLLELLSLQNLINLKTICVDRLSTE--SFAELRTMKVEN 634 (775)
Q Consensus 560 ~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~---~~~~p~L~~L~l~~~~~l~~~~~~~~~~~--~~~~L~~L~l~~ 634 (775)
+.. ....+++|+.|+++++. ++.+........ ...+++|+.|+++++ .+..+ +.... .+++|++|++++
T Consensus 449 p~~-~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l---p~~~~~~~l~~L~~L~Ls~ 522 (636)
T 4eco_A 449 PKE-LFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKL---SDDFRATTLPYLVGIDLSY 522 (636)
T ss_dssp CTH-HHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBC---CGGGSTTTCTTCCEEECCS
T ss_pred CHH-HHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCC-cCCcc---ChhhhhccCCCcCEEECCC
Confidence 332 12347888899888875 333321111000 122348888888876 45566 33333 788899999988
Q ss_pred CCCCCccccchhhcCCCCccEEEEecccchHHHhhccCCCCcccCCCCCCccccccccCeEecCCCCCccccccC
Q 042822 635 CDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVADNSNANEKIEFAQIRYLSLGNLPELKSFFCE 709 (775)
Q Consensus 635 C~~L~~l~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~ 709 (775)
| .++.+|. .+..+++|+.|+++++..+..- .. ....|..+..+++|+.|+|++|.- +.+|..
T Consensus 523 N-~l~~ip~--~~~~l~~L~~L~Ls~N~~ls~N-----~l----~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~ 584 (636)
T 4eco_A 523 N-SFSKFPT--QPLNSSTLKGFGIRNQRDAQGN-----RT----LREWPEGITLCPSLTQLQIGSNDI-RKVNEK 584 (636)
T ss_dssp S-CCSSCCC--GGGGCSSCCEEECCSCBCTTCC-----BC----CCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred C-CCCCcCh--hhhcCCCCCEEECCCCcccccC-----cc----cccChHHHhcCCCCCEEECCCCcC-CccCHh
Confidence 6 5666765 5677888999988765522110 00 011266677788888998888854 777644
No 12
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=2.4e-26 Score=267.05 Aligned_cols=465 Identities=15% Similarity=0.112 Sum_probs=270.6
Q ss_pred eecCCccCCCCcccccceeEEEEEcCCCCCCCCC-C-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCC
Q 042822 266 VRNGDVWEWPDKDALKKCYAISWIDSSGGELPEG-L-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLF 343 (775)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~lp~~-~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~ 343 (775)
..+.....+|. ..+.++++|++++|.+..++.. + ++++|++|++++|.+. .+++..|.++++|++|++++|.++
T Consensus 11 cs~~~L~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~ 86 (680)
T 1ziw_A 11 CSHLKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS---KLEPELCQKLPMLKVLNLQHNELS 86 (680)
T ss_dssp CCSSCCSSCCS-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC---CCCTTHHHHCTTCCEEECCSSCCC
T ss_pred CCCCCcccccc-ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC---ccCHHHHhcccCcCEEECCCCccC
Confidence 33444455554 4557899999999999888864 3 8999999999999877 465566799999999999999999
Q ss_pred CCCc-ccccccCccEEEcCCCCCCC--ccccccCCcccEEEecCCCCccc-chhhhccCCCCEecccCCccccccchHHh
Q 042822 344 SLPS-SIDLLLNLRTLCLDHGTLGD--ITIIGELKNLEILSLIGSDIVEF-PEELGKLTKLRLLDLTNCFHLKVIAANLI 419 (775)
Q Consensus 344 ~lp~-~i~~l~~L~~L~L~~~~l~~--p~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~p~~~l 419 (775)
.+|. .++++++|++|++++|.+.. +..++++++|++|++++|.++.+ |..++++++|++|++++| .+..++...+
T Consensus 87 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 165 (680)
T 1ziw_A 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEEL 165 (680)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHH
T ss_pred ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC-cccccCHHHh
Confidence 9987 59999999999999999988 35799999999999999988854 566889999999999998 4566655445
Q ss_pred h--ccccccEEEcCCCcccceecccCCccccccccccccC---------------------CCCCCCEEEEEeeCCCCCC
Q 042822 420 A--SFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELM---------------------PLPRLTTLEIAVENDNALP 476 (775)
Q Consensus 420 ~--~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~---------------------~l~~L~~L~l~~~~~~~~~ 476 (775)
+ .+++|++|++++|.+....+..- ..+..+. ..++|+.|+++++.....+
T Consensus 166 ~~~~~~~L~~L~L~~n~l~~~~~~~~-------~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~ 238 (680)
T 1ziw_A 166 DIFANSSLKKLELSSNQIKEFSPGCF-------HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238 (680)
T ss_dssp GGGTTCEESEEECTTCCCCCBCTTGG-------GGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEEC
T ss_pred hccccccccEEECCCCcccccChhhh-------hhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccC
Confidence 4 45899999999998764443100 0000000 1256677777666555433
Q ss_pred Cc-c-cc--ccccceEEEecCCCCCCccccccccccccccccccccccccceEEEeccCccc-ccccccccccceEEeec
Q 042822 477 EG-F-FV--RELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNCKTI-CSRKLQGIRKVEYLCLD 551 (775)
Q Consensus 477 ~~-~-~~--~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~l~~l~~L~~L~l~ 551 (775)
.. + .+ ++|+.|++..+.....++ ..+..+++|+.|+++++.... .|..+..+++|++|+++
T Consensus 239 ~~~~~~l~~~~L~~L~Ls~n~l~~~~~--------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 304 (680)
T 1ziw_A 239 NTTFLGLKWTNLTMLDLSYNNLNVVGN--------------DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304 (680)
T ss_dssp TTTTGGGGGSCCCEEECTTSCCCEECT--------------TTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECT
T ss_pred hhHhhccCcCCCCEEECCCCCcCccCc--------------ccccCcccccEeeCCCCccCccChhhhcCCCCccEEecc
Confidence 22 2 22 236666665544322211 011225566666666543332 23344455556666555
Q ss_pred ccCCccc-----ccc--cccccccccCcEEEeecCCCccccccCCCcccCCcccc-------------------------
Q 042822 552 KFQGVKN-----ILF--ELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPL------------------------- 599 (775)
Q Consensus 552 ~~~~~~~-----~~~--~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~------------------------- 599 (775)
++..... ++. ......+++|+.|+++++. +..+ .......+++
T Consensus 305 ~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~ 379 (680)
T 1ziw_A 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGI----KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379 (680)
T ss_dssp TCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCC----CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGT
T ss_pred chhhhcccccccccccChhhcccCCCCCEEECCCCc-cCCC----ChhHhccccCCcEEECCCCchhhhhcchhhhcccc
Confidence 4321110 000 0012234555555555443 1111 0011223444
Q ss_pred ---cceeecccccccccccccccCcccccCCCeEEeccCCCCCccccchhhcCCCCccEEEEecccchHHHh--------
Q 042822 600 ---LELLSLQNLINLKTICVDRLSTESFAELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIF-------- 668 (775)
Q Consensus 600 ---L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~~L~~l~-------- 668 (775)
|+.|++.++. +..+. +.....+++|+.|++++|.--..+++ ..+..+++|++|++++|. +..+.
T Consensus 380 ~~~L~~L~L~~n~-l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~ 454 (680)
T 1ziw_A 380 HSPLHILNLTKNK-ISKIE--SDAFSWLGHLEVLDLGLNEIGQELTG-QEWRGLENIFEIYLSYNK-YLQLTRNSFALVP 454 (680)
T ss_dssp TSCCCEEECTTSC-CCEEC--TTTTTTCTTCCEEECCSSCCEEECCS-GGGTTCTTCCEEECCSCS-EEECCTTTTTTCT
T ss_pred cCcCceEECCCCC-CCeEC--hhhhhCCCCCCEEeCCCCcCccccCc-ccccCcccccEEecCCCC-cceeChhhhhcCc
Confidence 4445444432 22221 22345677788888877643333433 356778888888887765 22111
Q ss_pred ------hccCCCCcccCCCCCCccccccccCeEecCCCCCccccccCCCCCCCCCCccccccccc-ccCCCcceeec---
Q 042822 669 ------AIGGEEPDVADNSNANEKIEFAQIRYLSLGNLPELKSFFCELRGPSMSPNRRETQEGLT-ASTGDSEIIVE--- 738 (775)
Q Consensus 669 ------~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~~~--- 738 (775)
...+... .....|.....+++|+.|+++++ +++.++... .. ..+.+ ..+. ..+.+..+...
T Consensus 455 ~L~~L~l~~n~l~--~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~~~-~~--~l~~L---~~L~Ls~N~l~~~~~~~~~ 525 (680)
T 1ziw_A 455 SLQRLMLRRVALK--NVDSSPSPFQPLRNLTILDLSNN-NIANINDDM-LE--GLEKL---EILDLQHNNLARLWKHANP 525 (680)
T ss_dssp TCCEEECTTSCCB--CTTCSSCTTTTCTTCCEEECCSS-CCCCCCTTT-TT--TCTTC---CEEECCSSCCGGGGSTTST
T ss_pred ccccchhcccccc--ccccCCcccccCCCCCEEECCCC-CCCcCChhh-hc--ccccc---CEEeCCCCCccccchhhcc
Confidence 0000000 00112334455566666666665 344444220 00 11112 1111 11222222111
Q ss_pred ----CCCCCccccccceeeeccccchh-hhhcccceeecccC
Q 042822 739 ----DMPDTWTSLFNEKRLWSCVKLMP-KVFGTIKLLVAFNV 775 (775)
Q Consensus 739 ----~~~~~~~~l~~~~~~~p~l~~~p-~~~~~L~~L~~~~~ 775 (775)
..+..+..+....++.++++.+| ..+.+++.|..+++
T Consensus 526 ~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 567 (680)
T 1ziw_A 526 GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL 567 (680)
T ss_dssp TSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeEC
Confidence 11345566777788888998885 46888888887764
No 13
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=9.7e-27 Score=256.93 Aligned_cols=348 Identities=20% Similarity=0.189 Sum_probs=279.0
Q ss_pred cccceeEEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEE
Q 042822 279 ALKKCYAISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTL 358 (775)
Q Consensus 279 ~~~~~~~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 358 (775)
...+++.|++.++.+..+|....+++|++|++++|.+. .++. +..+++|++|++++|.+..++. ++++++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~---~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT---DITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC---CCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred HhccccEEecCCCCCccCcchhhhcCCCEEECCCCccC---Cchh--hhccccCCEEECCCCccccChh-hcCCCCCCEE
Confidence 35689999999999988887668999999999999877 4555 6899999999999999998887 9999999999
Q ss_pred EcCCCCCCCccccccCCcccEEEecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccce
Q 042822 359 CLDHGTLGDITIIGELKNLEILSLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWK 438 (775)
Q Consensus 359 ~L~~~~l~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~ 438 (775)
++++|.+...+.++++++|++|++++|.+..+|. ++.+++|++|++.+ .+..++. ++++++|++|++++|.+..
T Consensus 118 ~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~--~~~~~~~--~~~l~~L~~L~l~~n~l~~- 191 (466)
T 1o6v_A 118 TLFNNQITDIDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGN--QVTDLKP--LANLTTLERLDISSNKVSD- 191 (466)
T ss_dssp ECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEE--SCCCCGG--GTTCTTCCEEECCSSCCCC-
T ss_pred ECCCCCCCCChHHcCCCCCCEEECCCCccCCChh-hccCCcccEeecCC--cccCchh--hccCCCCCEEECcCCcCCC-
Confidence 9999999985559999999999999999998874 89999999999974 3445554 8899999999999998651
Q ss_pred ecccCCccccccccccccCCCCCCCEEEEEeeCCCCCCCccccccccceEEEecCCCCCCcccccccccccccccccccc
Q 042822 439 VEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILD 518 (775)
Q Consensus 439 ~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 518 (775)
+..+..+++|+.|+++++....++....+++|+.|++..+....++.+ ..
T Consensus 192 --------------~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l----------------~~ 241 (466)
T 1o6v_A 192 --------------ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL----------------AS 241 (466)
T ss_dssp --------------CGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGG----------------GG
T ss_pred --------------ChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhh----------------hc
Confidence 245788999999999999888776644678899998887765544322 23
Q ss_pred ccccceEEEeccCcccccccccccccceEEeecccCCcccccccccccccccCcEEEeecCCCccccccCCCcccCCccc
Q 042822 519 HQSLRMLKLKLNCKTICSRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFP 598 (775)
Q Consensus 519 ~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p 598 (775)
+++|+.|+++++.....+. +..+++|++|++++|.. ...+. ...+++|+.|++++|. ++.+. ....++
T Consensus 242 l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l-~~~~~---~~~l~~L~~L~L~~n~-l~~~~------~~~~l~ 309 (466)
T 1o6v_A 242 LTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQI-SNISP---LAGLTALTNLELNENQ-LEDIS------PISNLK 309 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCC-CCCGG---GTTCTTCSEEECCSSC-CSCCG------GGGGCT
T ss_pred CCCCCEEECCCCccccchh-hhcCCCCCEEECCCCcc-Ccccc---ccCCCccCeEEcCCCc-ccCch------hhcCCC
Confidence 8999999999977666554 77899999999998864 33333 4568999999999975 33321 356789
Q ss_pred ccceeecccccccccccccccCcccccCCCeEEeccCCCCCccccchhhcCCCCccEEEEecccchHHHhhccCCCCccc
Q 042822 599 LLELLSLQNLINLKTICVDRLSTESFAELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVA 678 (775)
Q Consensus 599 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~~~~ 678 (775)
+|+.|+++++. +..+. ....+++|++|++++| .++.++ .+..+++|+.|++++|+ +..++
T Consensus 310 ~L~~L~L~~n~-l~~~~----~~~~l~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~l~~n~-l~~~~---------- 369 (466)
T 1o6v_A 310 NLTYLTLYFNN-ISDIS----PVSSLTKLQRLFFYNN-KVSDVS---SLANLTNINWLSAGHNQ-ISDLT---------- 369 (466)
T ss_dssp TCSEEECCSSC-CSCCG----GGGGCTTCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSSC-CCBCG----------
T ss_pred CCCEEECcCCc-CCCch----hhccCccCCEeECCCC-ccCCch---hhccCCCCCEEeCCCCc-cCccc----------
Confidence 99999999984 44441 2568999999999998 667663 57889999999998885 33332
Q ss_pred CCCCCCccccccccCeEecCCCCCccccc
Q 042822 679 DNSNANEKIEFAQIRYLSLGNLPELKSFF 707 (775)
Q Consensus 679 ~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 707 (775)
| ...+++|+.|++++|+ +..+|
T Consensus 370 ----~--~~~l~~L~~L~l~~n~-~~~~p 391 (466)
T 1o6v_A 370 ----P--LANLTRITQLGLNDQA-WTNAP 391 (466)
T ss_dssp ----G--GTTCTTCCEEECCCEE-EECCC
T ss_pred ----h--hhcCCCCCEEeccCCc-ccCCc
Confidence 2 4668999999999984 44444
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=1.8e-27 Score=272.37 Aligned_cols=354 Identities=13% Similarity=0.128 Sum_probs=273.0
Q ss_pred CCCCC-CCCCccEEEcccCCCCCccc-----------------cChhhhh--CCCcccEEEecCCCCC-CCCcccccccC
Q 042822 296 LPEGL-ECPQLELLLLSSKHSSVDVN-----------------IPRSFFT--GMRELKVVDLTNMQLF-SLPSSIDLLLN 354 (775)
Q Consensus 296 lp~~~-~~~~Lr~L~l~~~~~~~~~~-----------------l~~~~~~--~l~~L~~L~l~~~~~~-~lp~~i~~l~~ 354 (775)
+|..+ ++++|++|++++|.+.. . +|.++ . ++++|++|++++|.+. .+|..++++++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 274 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVA--ENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPE 274 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCG--GGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSS
T ss_pred CCHHHhcccCCCEEECcCCcccc--ccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCC
Confidence 66655 89999999999999774 3 78775 6 8999999999999977 78999999999
Q ss_pred ccEEEcCCCC-CCC---ccccccC------CcccEEEecCCCCcccch--hhhccCCCCEecccCCccccccchHHhhcc
Q 042822 355 LRTLCLDHGT-LGD---ITIIGEL------KNLEILSLIGSDIVEFPE--ELGKLTKLRLLDLTNCFHLKVIAANLIASF 422 (775)
Q Consensus 355 L~~L~L~~~~-l~~---p~~i~~l------~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L 422 (775)
|++|++++|. ++. |..++++ ++|++|++++|.++.+|. .++++++|++|++++|...+.+| . ++++
T Consensus 275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l 352 (636)
T 4eco_A 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSE 352 (636)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEE
T ss_pred CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCC
Confidence 9999999998 873 7778776 999999999999999999 99999999999999996555899 5 9999
Q ss_pred ccccEEEcCCCcccceecccCCccccccccccccCCCCC-CCEEEEEeeCCCCCCCcccc---ccccceEEEecCCCCCC
Q 042822 423 TRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLPR-LTTLEIAVENDNALPEGFFV---RELERFKILIGDRSFEP 498 (775)
Q Consensus 423 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~-L~~L~l~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~l~ 498 (775)
++|++|++++|.+. .+| ..+..+++ |+.|++++|.+..+|..+.. ++|+.|++..+.+....
T Consensus 353 ~~L~~L~L~~N~l~-~lp-------------~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~ 418 (636)
T 4eco_A 353 IKLASLNLAYNQIT-EIP-------------ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVD 418 (636)
T ss_dssp EEESEEECCSSEEE-ECC-------------TTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTT
T ss_pred CCCCEEECCCCccc-ccc-------------HhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcc
Confidence 99999999999887 444 66888888 99999999999999986632 47888888877654432
Q ss_pred ccccccccccccccccccccccccceEEEeccCccccccccc-ccccceEEeecccCCccccccccccc------ccccC
Q 042822 499 PVILSKDWFRISRSHFLILDHQSLRMLKLKLNCKTICSRKLQ-GIRKVEYLCLDKFQGVKNILFELDTQ------GFSQL 571 (775)
Q Consensus 499 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~------~l~~L 571 (775)
+-.. . ........+++|+.|+++++.....|..+. .+++|++|++++|... .++...... .+++|
T Consensus 419 p~~l--~-----~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L 490 (636)
T 4eco_A 419 GKNF--D-----PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLL 490 (636)
T ss_dssp TCSS--C-----TTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGC
T ss_pred hhhh--c-----ccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCc
Confidence 1100 0 000001126799999999988878787765 5899999999998654 554432221 13399
Q ss_pred cEEEeecCCCccccccCCCcccC--CcccccceeecccccccccccccccCcccccCCCeEEeccC------CCCCcccc
Q 042822 572 KHLLVQNNPDLLFIVDSREIVDC--DAFPLLELLSLQNLINLKTICVDRLSTESFAELRTMKVENC------DELSNIFV 643 (775)
Q Consensus 572 ~~L~l~~~~~l~~i~~~~~~~~~--~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C------~~L~~l~~ 643 (775)
+.|+++++. ++.+. ... ..+++|+.|+++++. +..+ |.....+++|++|++++| .-...+|.
T Consensus 491 ~~L~Ls~N~-l~~lp-----~~~~~~~l~~L~~L~Ls~N~-l~~i---p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~ 560 (636)
T 4eco_A 491 TSIDLRFNK-LTKLS-----DDFRATTLPYLVGIDLSYNS-FSKF---PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560 (636)
T ss_dssp CEEECCSSC-CCBCC-----GGGSTTTCTTCCEEECCSSC-CSSC---CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT
T ss_pred cEEECcCCc-CCccC-----hhhhhccCCCcCEEECCCCC-CCCc---ChhhhcCCCCCEEECCCCcccccCcccccChH
Confidence 999999975 44332 122 378999999999964 5556 455678999999999653 33445555
Q ss_pred chhhcCCCCccEEEEecccchHHHhhccCCCCcccCCCCCCccccccccCeEecCCCCCccccc
Q 042822 644 LSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVADNSNANEKIEFAQIRYLSLGNLPELKSFF 707 (775)
Q Consensus 644 ~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 707 (775)
.+..+++|++|++++|.- +.+ |... .++|+.|+|++|+- .++.
T Consensus 561 --~l~~l~~L~~L~Ls~N~l-~~i---------------p~~~--~~~L~~L~Ls~N~l-~~~~ 603 (636)
T 4eco_A 561 --GITLCPSLTQLQIGSNDI-RKV---------------NEKI--TPNISVLDIKDNPN-ISID 603 (636)
T ss_dssp --TGGGCSSCCEEECCSSCC-CBC---------------CSCC--CTTCCEEECCSCTT-CEEE
T ss_pred --HHhcCCCCCEEECCCCcC-Ccc---------------CHhH--hCcCCEEECcCCCC-cccc
Confidence 678899999999988863 444 3333 38999999999963 4444
No 15
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=4.2e-26 Score=264.92 Aligned_cols=146 Identities=22% Similarity=0.224 Sum_probs=108.0
Q ss_pred cccceeEEEEEcCCCCCCCCCC--CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCC-cccccccCc
Q 042822 279 ALKKCYAISWIDSSGGELPEGL--ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLP-SSIDLLLNL 355 (775)
Q Consensus 279 ~~~~~~~l~l~~~~~~~lp~~~--~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L 355 (775)
..+++++|++.+|.+..+++.. ++++|++|++++|.+. .+|...|.++++|++|++++|.+..+| ..++++++|
T Consensus 47 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 123 (680)
T 1ziw_A 47 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS---QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123 (680)
T ss_dssp GGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC---CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred CCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC---ccChhhhccCCCCCEEECCCCccCccChhHccccCCC
Confidence 3567888888888887765533 7888888888888776 677766788888888888888888775 568888888
Q ss_pred cEEEcCCCCCCC--ccccccCCcccEEEecCCCCcccchh-h--hccCCCCEecccCCccccccchHHhhccccccEE
Q 042822 356 RTLCLDHGTLGD--ITIIGELKNLEILSLIGSDIVEFPEE-L--GKLTKLRLLDLTNCFHLKVIAANLIASFTRLEEL 428 (775)
Q Consensus 356 ~~L~L~~~~l~~--p~~i~~l~~L~~L~l~~~~l~~lp~~-i--~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L 428 (775)
++|++++|.+.. |..++++++|++|++++|.++.++.. + ..+++|++|++++| .+..+++..++.+++|+.|
T Consensus 124 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 200 (680)
T 1ziw_A 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFSPGCFHAIGRLFGL 200 (680)
T ss_dssp CEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC-CCCCBCTTGGGGSSEECEE
T ss_pred CEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC-cccccChhhhhhhhhhhhh
Confidence 888888888776 56678888888888888888866553 3 34578888888887 4444444335554443333
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=3.7e-27 Score=273.99 Aligned_cols=357 Identities=14% Similarity=0.159 Sum_probs=272.8
Q ss_pred CCCCCCCCC-CCCCccEEEcccCCCCCc---------------cccChhh-hhCCCcccEEEecCCCCC-CCCccccccc
Q 042822 292 SGGELPEGL-ECPQLELLLLSSKHSSVD---------------VNIPRSF-FTGMRELKVVDLTNMQLF-SLPSSIDLLL 353 (775)
Q Consensus 292 ~~~~lp~~~-~~~~Lr~L~l~~~~~~~~---------------~~l~~~~-~~~l~~L~~L~l~~~~~~-~lp~~i~~l~ 353 (775)
.+..+|..+ ++++|++|++++|.+... +.+|.++ |.++++|++|++++|.+. .+|..+++++
T Consensus 436 ~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~ 515 (876)
T 4ecn_A 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP 515 (876)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCS
T ss_pred cccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCC
Confidence 333478766 899999999999987741 0177776 349999999999999876 8899999999
Q ss_pred CccEEEcCCCC-CCC---ccccccCC-------cccEEEecCCCCcccch--hhhccCCCCEecccCCccccccchHHhh
Q 042822 354 NLRTLCLDHGT-LGD---ITIIGELK-------NLEILSLIGSDIVEFPE--ELGKLTKLRLLDLTNCFHLKVIAANLIA 420 (775)
Q Consensus 354 ~L~~L~L~~~~-l~~---p~~i~~l~-------~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~~p~~~l~ 420 (775)
+|++|++++|. ++. |..++++. +|++|++++|.++.+|. .++++++|++|++++|. +..+| . ++
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~-~~ 592 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-A-FG 592 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-C-CC
T ss_pred CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-h-hc
Confidence 99999999998 763 66677666 99999999999999999 89999999999999984 56888 4 99
Q ss_pred ccccccEEEcCCCcccceecccCCccccccccccccCCCCC-CCEEEEEeeCCCCCCCcccc---ccccceEEEecCCCC
Q 042822 421 SFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLPR-LTTLEIAVENDNALPEGFFV---RELERFKILIGDRSF 496 (775)
Q Consensus 421 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~-L~~L~l~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~ 496 (775)
++++|++|++++|.+. .+| ..+..+++ |+.|++++|.+..+|..+.. ++|+.|++..+.+..
T Consensus 593 ~L~~L~~L~Ls~N~l~-~lp-------------~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIE-EIP-------------EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp TTSEESEEECCSSCCS-CCC-------------TTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred CCCcceEEECcCCccc-cch-------------HHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCC
Confidence 9999999999999887 444 66888888 99999999999888876532 348888887776543
Q ss_pred C-CccccccccccccccccccccccccceEEEeccCccccccccc-ccccceEEeecccCCcccccccccc------ccc
Q 042822 497 E-PPVILSKDWFRISRSHFLILDHQSLRMLKLKLNCKTICSRKLQ-GIRKVEYLCLDKFQGVKNILFELDT------QGF 568 (775)
Q Consensus 497 l-~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~------~~l 568 (775)
. |.++... ....+++|+.|+++++.....|.++. .+++|+.|++++|.. ..++..... ..+
T Consensus 659 ~ip~l~~~l----------~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L-~~ip~~~~~~~~~~l~nl 727 (876)
T 4ecn_A 659 EGRNISCSM----------DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM-TSIPENSLKPKDGNYKNT 727 (876)
T ss_dssp TSSSCSSCT----------TTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCC-SCCCTTSSSCTTSCCTTG
T ss_pred ccccchhhh----------ccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcC-CccChHHhcccccccccc
Confidence 2 2222100 01125689999999988888887776 789999999999854 355443322 124
Q ss_pred ccCcEEEeecCCCccccccCCCcccC--CcccccceeecccccccccccccccCcccccCCCeEEeccCC------CCCc
Q 042822 569 SQLKHLLVQNNPDLLFIVDSREIVDC--DAFPLLELLSLQNLINLKTICVDRLSTESFAELRTMKVENCD------ELSN 640 (775)
Q Consensus 569 ~~L~~L~l~~~~~l~~i~~~~~~~~~--~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~------~L~~ 640 (775)
++|+.|++++|. ++.+. ... ..+++|+.|+++++ .+..+ |.....+++|+.|++++|+ -...
T Consensus 728 ~~L~~L~Ls~N~-L~~lp-----~~l~~~~l~~L~~L~Ls~N-~L~~l---p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ 797 (876)
T 4ecn_A 728 YLLTTIDLRFNK-LTSLS-----DDFRATTLPYLSNMDVSYN-CFSSF---PTQPLNSSQLKAFGIRHQRDAEGNRILRQ 797 (876)
T ss_dssp GGCCEEECCSSC-CCCCC-----GGGSTTTCTTCCEEECCSS-CCSSC---CCGGGGCTTCCEEECCCCBCTTCCBCCCC
T ss_pred CCccEEECCCCC-Cccch-----HHhhhccCCCcCEEEeCCC-CCCcc---chhhhcCCCCCEEECCCCCCccccccccc
Confidence 499999999984 44432 122 37899999999986 45556 4556789999999998733 3445
Q ss_pred cccchhhcCCCCccEEEEecccchHHHhhccCCCCcccCCCCCCccccccccCeEecCCCCCccccc
Q 042822 641 IFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVADNSNANEKIEFAQIRYLSLGNLPELKSFF 707 (775)
Q Consensus 641 l~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 707 (775)
+|. .+..+++|+.|++++|.- ..+ |... .++|+.|+|++|+ +..+.
T Consensus 798 ip~--~l~~L~~L~~L~Ls~N~L-~~I---------------p~~l--~~~L~~LdLs~N~-l~~i~ 843 (876)
T 4ecn_A 798 WPT--GITTCPSLIQLQIGSNDI-RKV---------------DEKL--TPQLYILDIADNP-NISID 843 (876)
T ss_dssp CCT--TGGGCSSCCEEECCSSCC-CBC---------------CSCC--CSSSCEEECCSCT-TCEEE
T ss_pred ChH--HHhcCCCCCEEECCCCCC-Ccc---------------CHhh--cCCCCEEECCCCC-CCccC
Confidence 554 678899999999988863 444 4332 3799999999997 44443
No 17
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=6.3e-26 Score=268.64 Aligned_cols=172 Identities=21% Similarity=0.268 Sum_probs=140.4
Q ss_pred EEeecCCccCCCCcccccceeEEEEEcCCCCCCCC-CC-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCC
Q 042822 264 FLVRNGDVWEWPDKDALKKCYAISWIDSSGGELPE-GL-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQ 341 (775)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~lp~-~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~ 341 (775)
..........+|. .++++++|++++|.+..+++ .+ .+++|++|++++|.... .+++..|.++++|++|+|++|.
T Consensus 9 ~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~--~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 9 AFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL--TIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCC--EECTTTTSSCTTCCEEECTTCC
T ss_pred EEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCcc--ccCHHHhcCCCCCCEEECCCCc
Confidence 3344445566665 77899999999999987754 44 99999999999996554 6766667999999999999999
Q ss_pred CCCC-CcccccccCccEEEcCCCCCCC--ccc--cccCCcccEEEecCCCCccc--chhhhccCCCCEecccCCcccccc
Q 042822 342 LFSL-PSSIDLLLNLRTLCLDHGTLGD--ITI--IGELKNLEILSLIGSDIVEF--PEELGKLTKLRLLDLTNCFHLKVI 414 (775)
Q Consensus 342 ~~~l-p~~i~~l~~L~~L~L~~~~l~~--p~~--i~~l~~L~~L~l~~~~l~~l--p~~i~~l~~L~~L~l~~~~~l~~~ 414 (775)
+..+ |..++++++|++|++++|.+.. |.. ++++++|++|++++|.++.+ +..++++++|++|++++|...+..
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~ 164 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC 164 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC
Confidence 9965 8899999999999999999886 554 99999999999999998865 357999999999999998544444
Q ss_pred chHHhhcc--ccccEEEcCCCcccceec
Q 042822 415 AANLIASF--TRLEELYMSNCFVEWKVE 440 (775)
Q Consensus 415 p~~~l~~L--~~L~~L~l~~~~~~~~~~ 440 (775)
+.. ++.+ ++|+.|++++|.+....+
T Consensus 165 ~~~-l~~l~~~~L~~L~L~~n~l~~~~~ 191 (844)
T 3j0a_A 165 EHE-LEPLQGKTLSFFSLAANSLYSRVS 191 (844)
T ss_dssp SGG-GHHHHHCSSCCCEECCSBSCCCCC
T ss_pred HHH-cccccCCccceEECCCCccccccc
Confidence 544 7777 788889988887764433
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=2.8e-26 Score=260.95 Aligned_cols=447 Identities=15% Similarity=0.075 Sum_probs=268.1
Q ss_pred EEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCC-cccccccCccEEEcCCC
Q 042822 285 AISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLP-SSIDLLLNLRTLCLDHG 363 (775)
Q Consensus 285 ~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~ 363 (775)
.+...+.++..+|..+ .+++++|++++|.+. .++...|.++++|++|++++|.+..++ ..++++++|++|++++|
T Consensus 11 ~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 11 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLR---HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp EEECCSSCCSSCCSSS-CSSCCEEECCSCCCC---EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred EEEeCCCCccccCCCc-cccccEEEccCCccC---ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 4455555677888755 357999999999887 566666799999999999999999774 67899999999999999
Q ss_pred CCCC--ccccccCCcccEEEecCCCCcccch-hhhccCCCCEecccCCcccc-ccchHHhhccccccEEEcCCCccccee
Q 042822 364 TLGD--ITIIGELKNLEILSLIGSDIVEFPE-ELGKLTKLRLLDLTNCFHLK-VIAANLIASFTRLEELYMSNCFVEWKV 439 (775)
Q Consensus 364 ~l~~--p~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~-~~p~~~l~~L~~L~~L~l~~~~~~~~~ 439 (775)
.+.. |..++++++|++|++++|.++.+|. .++++++|++|++++|.... .+|.. ++++++|++|++++|.+....
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCEEC
T ss_pred cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccceec
Confidence 9987 4679999999999999999998876 69999999999999984333 36777 999999999999999877443
Q ss_pred cccCCccccccccccccCCCCCC----CEEEEEeeCCCCCCCcc-ccccccceEEEecCCC-------------------
Q 042822 440 EDEGSSSKRSKASLDELMPLPRL----TTLEIAVENDNALPEGF-FVRELERFKILIGDRS------------------- 495 (775)
Q Consensus 440 ~~~~~~~~~~~~~l~~l~~l~~L----~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~------------------- 495 (775)
+ ..++.+++| +.|+++.+....++... ...+|+.+++..+...
T Consensus 166 ~-------------~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l 232 (570)
T 2z63_A 166 C-------------TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232 (570)
T ss_dssp G-------------GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEE
T ss_pred H-------------HHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeee
Confidence 3 333444444 56666666555444322 2224555544332100
Q ss_pred ------CC---Cccccc--------------ccc--ccccccccccccccccceEEEeccCcccccccccccccceEEee
Q 042822 496 ------FE---PPVILS--------------KDW--FRISRSHFLILDHQSLRMLKLKLNCKTICSRKLQGIRKVEYLCL 550 (775)
Q Consensus 496 ------~l---~~l~~~--------------~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l 550 (775)
.. ..++.. +.. .........+..+++|+.|++.++.....|.++..+ +|++|++
T Consensus 233 ~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l 311 (570)
T 2z63_A 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLEL 311 (570)
T ss_dssp EEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEE
T ss_pred ccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEee
Confidence 00 000000 000 000011122344788999999887777778887777 8888888
Q ss_pred cccCCcccccccccccccccCcEEEeecCCCccccccCCCcccCCcccccceeecccccccccccccccCcccccCCCeE
Q 042822 551 DKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKTICVDRLSTESFAELRTM 630 (775)
Q Consensus 551 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L 630 (775)
++|... .++. ..+++|+.|++.++.....+ ....+|+|+.|+++++. +..+...+.....+++|++|
T Consensus 312 ~~n~~~-~l~~----~~l~~L~~L~l~~n~~~~~~-------~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L 378 (570)
T 2z63_A 312 VNCKFG-QFPT----LKLKSLKRLTFTSNKGGNAF-------SEVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYL 378 (570)
T ss_dssp ESCBCS-SCCB----CBCSSCCEEEEESCBSCCBC-------CCCBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEE
T ss_pred ccCccc-ccCc----ccccccCEEeCcCCcccccc-------ccccCCCCCEEeCcCCc-cCccccccccccccCccCEE
Confidence 887643 3322 45778888888776532211 22566777777776653 22221111223345566666
Q ss_pred EeccCCCCCccccchhhcCCCCccEEEEecccchHHHhhccC--C---CCc------ccCCCCCCccccccccCeEecCC
Q 042822 631 KVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGG--E---EPD------VADNSNANEKIEFAQIRYLSLGN 699 (775)
Q Consensus 631 ~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~--~---~~~------~~~~~~~~~~~~~~~L~~L~l~~ 699 (775)
++++| .++.+++ .+..+++|++|++.+|.- ........ . ... ......+.....+++|+.|++++
T Consensus 379 ~l~~n-~l~~~~~--~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 454 (570)
T 2z63_A 379 DLSFN-GVITMSS--NFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454 (570)
T ss_dssp ECCSC-SEEEEEE--EEETCTTCCEEECTTSEE-ESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTT
T ss_pred ECCCC-ccccccc--cccccCCCCEEEccCCcc-ccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcC
Confidence 66554 2333433 244555555555544331 11100000 0 000 00000133444566777777777
Q ss_pred CCCc-cccccCCCCCCCCCCccccccccccc-CCCcceeecCCCCCccccccceeeeccccch-hhhhcccceeecccC
Q 042822 700 LPEL-KSFFCELRGPSMSPNRRETQEGLTAS-TGDSEIIVEDMPDTWTSLFNEKRLWSCVKLM-PKVFGTIKLLVAFNV 775 (775)
Q Consensus 700 c~~L-~~l~~~~~~~~~~~~~l~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~~~~~p~l~~~-p~~~~~L~~L~~~~~ 775 (775)
|.-. ..++.. .. ..+.+ ..+... +...++.+ ..+..+..+....++.++++++ |..+.++++|..+++
T Consensus 455 n~l~~~~~p~~--~~--~l~~L---~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 525 (570)
T 2z63_A 455 NSFQENFLPDI--FT--ELRNL---TFLDLSQCQLEQLSP-TAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525 (570)
T ss_dssp CEEGGGEECSC--CT--TCTTC---CEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CcCccccchhh--hh--cccCC---CEEECCCCccccCCh-hhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEe
Confidence 6432 123321 11 11122 112112 22222222 2344556677778888888888 566788888877664
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=3.1e-26 Score=257.19 Aligned_cols=153 Identities=18% Similarity=0.123 Sum_probs=83.8
Q ss_pred ccccceEEEeccCccc-ccccccccccceEEeecccCCcc--cccccccccccccCcEEEeecCCCccccccCCCcccCC
Q 042822 519 HQSLRMLKLKLNCKTI-CSRKLQGIRKVEYLCLDKFQGVK--NILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCD 595 (775)
Q Consensus 519 ~~~L~~L~l~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 595 (775)
+++|+.|+++++.... .|.++..+++|++|++++|.... .++.. ...+++|+.|+++++.--..+.. ....
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~--~~~l~~L~~L~Ls~N~l~~~l~~----~~~~ 396 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEM--TTQMKSLQQLDISQNSVSYDEKK----GDCS 396 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHH--HTTCTTCCEEECCSSCCBCCGGG----CSCC
T ss_pred CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHH--HhhCCCCCEEECCCCcCCccccc----chhc
Confidence 6667777777654433 45566667777777777665322 11111 23467777777776542111211 0123
Q ss_pred cccccceeecccccccccccccccCcccccCCCeEEeccCCCCCccccchhhcCCCCccEEEEecccchHHHhhccCCCC
Q 042822 596 AFPLLELLSLQNLINLKTICVDRLSTESFAELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEP 675 (775)
Q Consensus 596 ~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~ 675 (775)
.+++|+.|+++++.-...++ .. ..++|+.|++++| +++.+|. .+..+++|++|++++| +++.+
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~---~~--l~~~L~~L~Ls~N-~l~~ip~--~~~~l~~L~~L~L~~N-~l~~l-------- 459 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIF---RC--LPPRIKVLDLHSN-KIKSIPK--QVVKLEALQELNVASN-QLKSV-------- 459 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGG---GS--CCTTCCEEECCSS-CCCCCCG--GGGGCTTCCEEECCSS-CCCCC--------
T ss_pred cCccCCEEECcCCCCCcchh---hh--hcccCCEEECCCC-cccccch--hhhcCCCCCEEECCCC-cCCcc--------
Confidence 45677777777664323221 11 1157777777775 5566655 3446777777777665 34433
Q ss_pred cccCCCCCCc-cccccccCeEecCCCC
Q 042822 676 DVADNSNANE-KIEFAQIRYLSLGNLP 701 (775)
Q Consensus 676 ~~~~~~~~~~-~~~~~~L~~L~l~~c~ 701 (775)
|.. ...+++|+.|+++++|
T Consensus 460 -------~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 460 -------PDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp -------CTTTTTTCTTCCEEECCSSC
T ss_pred -------CHHHhccCCcccEEECcCCC
Confidence 222 4456677777777664
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=1.3e-26 Score=260.25 Aligned_cols=142 Identities=18% Similarity=0.216 Sum_probs=115.1
Q ss_pred eEEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCC-CcccccccCccEEEcCC
Q 042822 284 YAISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSL-PSSIDLLLNLRTLCLDH 362 (775)
Q Consensus 284 ~~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~ 362 (775)
++++++++.+..+|..+. ++|++|++++|.+. .++...|.++++|++|++++|.++.+ |..++++++|++|++++
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYIS---ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCC---CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCccc---ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 567888888888887665 88999999998877 56656668899999999999998866 67888999999999999
Q ss_pred CCCCC-ccccccCCcccEEEecCCCCcc--cchhhhccCCCCEecccCCccccccchHHhhccccc--cEEEcCCCcc
Q 042822 363 GTLGD-ITIIGELKNLEILSLIGSDIVE--FPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRL--EELYMSNCFV 435 (775)
Q Consensus 363 ~~l~~-p~~i~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L--~~L~l~~~~~ 435 (775)
|.++. |.. .+++|++|++++|.++. +|..++++++|++|++++|. +.. . .++.+++| ++|++++|.+
T Consensus 79 N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~-~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 79 NKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK--S-SVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp SCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--G-GGGGGTTSCEEEEEEEECTT
T ss_pred CceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch--h-hccccccceeeEEEeecccc
Confidence 98887 444 78899999999998875 57889999999999998874 333 2 26777887 9999888877
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=4.7e-26 Score=257.68 Aligned_cols=386 Identities=14% Similarity=0.101 Sum_probs=248.4
Q ss_pred ccccceeEEEEEcCCCCCCCC-CC-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCC--CCccccccc
Q 042822 278 DALKKCYAISWIDSSGGELPE-GL-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFS--LPSSIDLLL 353 (775)
Q Consensus 278 ~~~~~~~~l~l~~~~~~~lp~-~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~--lp~~i~~l~ 353 (775)
....++++|++.+|.+..+++ .+ .+++|++|++++|.+. .++...|.++++|++|++++|.++. .|..+++++
T Consensus 47 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 47 RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS---SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123 (549)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC---SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT
T ss_pred hcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC---ccCHHHhccCCCCcEEECCCCcccccchhhhhhccC
Confidence 346789999999999988775 34 8999999999999887 6777777999999999999999984 578899999
Q ss_pred CccEEEcCCCC-CCC-c-cccccCCcccEEEecCCCCc-ccchhhhccCCCCEecccCCccccccchHHhhccccccEEE
Q 042822 354 NLRTLCLDHGT-LGD-I-TIIGELKNLEILSLIGSDIV-EFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELY 429 (775)
Q Consensus 354 ~L~~L~L~~~~-l~~-p-~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~ 429 (775)
+|++|++++|. +.. | ..++++++|++|++++|.++ ..|..++++++|++|++++| ....+|...++.+++|++|+
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~ 202 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS-ESAFLLEIFADILSSVRYLE 202 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS-BSTTHHHHHHHSTTTBSEEE
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC-cccccchhhHhhcccccEEE
Confidence 99999999998 555 4 57999999999999999998 57889999999999999998 56777777567899999999
Q ss_pred cCCCcccceecccCCcc------------------ccccccccccCCCCCCCEEEEEeeCCCCCCCc--------ccccc
Q 042822 430 MSNCFVEWKVEDEGSSS------------------KRSKASLDELMPLPRLTTLEIAVENDNALPEG--------FFVRE 483 (775)
Q Consensus 430 l~~~~~~~~~~~~~~~~------------------~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~--------~~~~~ 483 (775)
+++|.+.+......... .........+..+++|+.++++++....++.. ..+.+
T Consensus 203 L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~ 282 (549)
T 2z81_A 203 LRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK 282 (549)
T ss_dssp EESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTT
T ss_pred ccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcc
Confidence 99998764210000000 00000011122334444444443322111100 02234
Q ss_pred ccceEEEecCCCCCCccccccccccccccccccccccccceEEEeccCccccccccc-ccccceEEeecccCCccccccc
Q 042822 484 LERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNCKTICSRKLQ-GIRKVEYLCLDKFQGVKNILFE 562 (775)
Q Consensus 484 L~~L~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~ 562 (775)
++.+.+......... .+. .........++|+.|+++++.....|.++. .+++|++|++++|......+..
T Consensus 283 L~~L~l~~~~i~~~~------~~~---~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 353 (549)
T 2z81_A 283 VETVTIRRLHIPQFY------LFY---DLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353 (549)
T ss_dssp CCEEEEESCBCSCGG------GSC---CCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHH
T ss_pred cccccccccccchhh------hcc---cchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccc
Confidence 444444332211100 000 000001124678888888877767776663 6888888888888654433211
Q ss_pred -ccccccccCcEEEeecCCCccccccCCCcccCCcccccceeecccccccccccccccCcccccCCCeEEeccCCCCCcc
Q 042822 563 -LDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKTICVDRLSTESFAELRTMKVENCDELSNI 641 (775)
Q Consensus 563 -~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l 641 (775)
...+.+++|+.|++++|. ++.+... ......+++|+.|+++++ .++.+ +.....+++|++|++++| +++.+
T Consensus 354 ~~~~~~l~~L~~L~Ls~N~-l~~~~~~--~~~~~~l~~L~~L~Ls~N-~l~~l---p~~~~~~~~L~~L~Ls~N-~l~~l 425 (549)
T 2z81_A 354 SACKGAWPSLQTLVLSQNH-LRSMQKT--GEILLTLKNLTSLDISRN-TFHPM---PDSCQWPEKMRFLNLSST-GIRVV 425 (549)
T ss_dssp HTCTTSSTTCCEEECTTSC-CCCHHHH--HHHGGGCTTCCEEECTTC-CCCCC---CSCCCCCTTCCEEECTTS-CCSCC
T ss_pred hhhhhccccCcEEEccCCc-ccccccc--hhhhhcCCCCCEEECCCC-CCccC---ChhhcccccccEEECCCC-Ccccc
Confidence 123457888888888874 3322100 012456788888888876 45555 344456778888888886 36655
Q ss_pred ccchhhcCCCCccEEEEecccchHHHhhccCCCCcccCCCCCCccccccccCeEecCCCCCcccccc
Q 042822 642 FVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVADNSNANEKIEFAQIRYLSLGNLPELKSFFC 708 (775)
Q Consensus 642 ~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~ 708 (775)
+. . ..++|++|++++|. ++.+ ...+++|++|+++++ +++.++.
T Consensus 426 ~~--~--~~~~L~~L~Ls~N~-l~~~------------------~~~l~~L~~L~Ls~N-~l~~ip~ 468 (549)
T 2z81_A 426 KT--C--IPQTLEVLDVSNNN-LDSF------------------SLFLPRLQELYISRN-KLKTLPD 468 (549)
T ss_dssp CT--T--SCTTCSEEECCSSC-CSCC------------------CCCCTTCCEEECCSS-CCSSCCC
T ss_pred cc--h--hcCCceEEECCCCC-hhhh------------------cccCChhcEEECCCC-ccCcCCC
Confidence 43 1 13567777776663 2221 124566666666666 4555553
No 22
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=7.7e-26 Score=239.95 Aligned_cols=148 Identities=20% Similarity=0.256 Sum_probs=82.2
Q ss_pred cccceeEEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEE
Q 042822 279 ALKKCYAISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTL 358 (775)
Q Consensus 279 ~~~~~~~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 358 (775)
.++++++|++.++.+..++....+++|++|++++|.+. .++. +..+++|++|++++|.++.+| .++.+++|++|
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~---~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQIT---DISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLREL 115 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC---CCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEE
T ss_pred hcccccEEEEeCCccccchhhhhcCCccEEEccCCccc---cchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEE
Confidence 34556666666666655554335666666666666544 3333 455666666666666655553 35566666666
Q ss_pred EcCCCCCCCccccccCCcccEEEecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcc
Q 042822 359 CLDHGTLGDITIIGELKNLEILSLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFV 435 (775)
Q Consensus 359 ~L~~~~l~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 435 (775)
++++|.+...+.+..+++|++|++++|.....+..+..+++|++|++++| .+..++. ++.+++|++|++++|.+
T Consensus 116 ~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l 189 (347)
T 4fmz_A 116 YLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQI 189 (347)
T ss_dssp ECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCC
T ss_pred ECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCcc
Confidence 66666655533355666666666666533322233556666666666655 3444443 55566666666655544
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=2.9e-25 Score=245.16 Aligned_cols=331 Identities=19% Similarity=0.210 Sum_probs=267.9
Q ss_pred CCccCCCCcccccceeEEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcc
Q 042822 269 GDVWEWPDKDALKKCYAISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSS 348 (775)
Q Consensus 269 ~~~~~~~~~~~~~~~~~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~ 348 (775)
.....++....+.++++|++++|.+..++....+++|++|++++|... .++. +.++++|++|++++|.+..+|.
T Consensus 56 ~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~---~~~~--~~~l~~L~~L~L~~n~l~~~~~- 129 (466)
T 1o6v_A 56 LGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIA---DITP--LANLTNLTGLTLFNNQITDIDP- 129 (466)
T ss_dssp SCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC---CCGG--GTTCTTCCEEECCSSCCCCCGG-
T ss_pred CCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccc---cChh--hcCCCCCCEEECCCCCCCCChH-
Confidence 334445555667899999999999998887559999999999999887 4554 6899999999999999998876
Q ss_pred cccccCccEEEcCCCCCCCccccccCCcccEEEecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEE
Q 042822 349 IDLLLNLRTLCLDHGTLGDITIIGELKNLEILSLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEEL 428 (775)
Q Consensus 349 i~~l~~L~~L~L~~~~l~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L 428 (775)
++++++|++|++++|.+...+.++++++|++|+++ +.+..++. +.++++|++|++++| .+..++. ++++++|++|
T Consensus 130 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L 204 (466)
T 1o6v_A 130 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSN-KVSDISV--LAKLTNLESL 204 (466)
T ss_dssp GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEE
T ss_pred HcCCCCCCEEECCCCccCCChhhccCCcccEeecC-CcccCchh-hccCCCCCEEECcCC-cCCCChh--hccCCCCCEE
Confidence 99999999999999999887779999999999997 45555554 899999999999998 4666664 8899999999
Q ss_pred EcCCCcccceecccCCccccccccccccCCCCCCCEEEEEeeCCCCCCCccccccccceEEEecCCCCCCcccccccccc
Q 042822 429 YMSNCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFR 508 (775)
Q Consensus 429 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~~~~~ 508 (775)
++++|.+... ..++.+++|+.|+++++....++....+++|+.|++..+.....+++
T Consensus 205 ~l~~n~l~~~---------------~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~-------- 261 (466)
T 1o6v_A 205 IATNNQISDI---------------TPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPL-------- 261 (466)
T ss_dssp ECCSSCCCCC---------------GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGG--------
T ss_pred EecCCccccc---------------ccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhh--------
Confidence 9999987622 22677899999999999888876555778999999887776554432
Q ss_pred ccccccccccccccceEEEeccCcccccccccccccceEEeecccCCcccccccccccccccCcEEEeecCCCccccccC
Q 042822 509 ISRSHFLILDHQSLRMLKLKLNCKTICSRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDS 588 (775)
Q Consensus 509 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~ 588 (775)
..+++|+.|+++++.....+. +..+++|+.|++++|.. +.++. ...+++|+.|++++|. +..+.
T Consensus 262 --------~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l-~~~~~---~~~l~~L~~L~L~~n~-l~~~~-- 325 (466)
T 1o6v_A 262 --------SGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQL-EDISP---ISNLKNLTYLTLYFNN-ISDIS-- 325 (466)
T ss_dssp --------TTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCC-SCCGG---GGGCTTCSEEECCSSC-CSCCG--
T ss_pred --------hcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcc-cCchh---hcCCCCCCEEECcCCc-CCCch--
Confidence 238999999999987766665 77899999999999864 33333 4568999999999985 33321
Q ss_pred CCcccCCcccccceeecccccccccccccccCcccccCCCeEEeccCCCCCccccchhhcCCCCccEEEEeccc
Q 042822 589 REIVDCDAFPLLELLSLQNLINLKTICVDRLSTESFAELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCN 662 (775)
Q Consensus 589 ~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~ 662 (775)
....+++|+.|++.+| .+..+ .....+++|+.|++++| .++.+++ +..+++|+.|++.+|+
T Consensus 326 ----~~~~l~~L~~L~l~~n-~l~~~----~~l~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 326 ----PVSSLTKLQRLFFYNN-KVSDV----SSLANLTNINWLSAGHN-QISDLTP---LANLTRITQLGLNDQA 386 (466)
T ss_dssp ----GGGGCTTCCEEECCSS-CCCCC----GGGTTCTTCCEEECCSS-CCCBCGG---GTTCTTCCEEECCCEE
T ss_pred ----hhccCccCCEeECCCC-ccCCc----hhhccCCCCCEEeCCCC-ccCccch---hhcCCCCCEEeccCCc
Confidence 3567899999999997 45555 24567999999999997 4666654 6889999999998876
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=4.5e-25 Score=249.81 Aligned_cols=143 Identities=22% Similarity=0.292 Sum_probs=100.4
Q ss_pred eeEEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCC-CcccccccCccEEEcC
Q 042822 283 CYAISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSL-PSSIDLLLNLRTLCLD 361 (775)
Q Consensus 283 ~~~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~ 361 (775)
.++++++++.+..+|..+. ++|++|++++|.+. .++...|.++++|++|++++|.++.+ |..++++++|++|+++
T Consensus 33 ~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSIS---ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCCC---CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred CcEEEcCCCCCccCCCCCC-CCcCEEECCCCCcc---ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 3677777777777776543 67788888877766 45555567778888888888877755 5667778888888888
Q ss_pred CCCCCC-ccccccCCcccEEEecCCCCcccc--hhhhccCCCCEecccCCccccccchHHhhccccc--cEEEcCCCcc
Q 042822 362 HGTLGD-ITIIGELKNLEILSLIGSDIVEFP--EELGKLTKLRLLDLTNCFHLKVIAANLIASFTRL--EELYMSNCFV 435 (775)
Q Consensus 362 ~~~l~~-p~~i~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L--~~L~l~~~~~ 435 (775)
+|.++. |.. .+++|++|++++|.++.+| ..++++++|++|++++|. +... . ++.+++| ++|++++|.+
T Consensus 109 ~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~--~-~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 109 HNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQL--D-LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp TSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTT--T-TGGGTTSCEEEEEEEESSC
T ss_pred CCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccC--c-hhhhhhceeeEEEeecccc
Confidence 887777 444 6778888888888777543 677788888888887763 3332 1 4455555 7777777765
No 25
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.94 E-value=1.4e-26 Score=261.53 Aligned_cols=197 Identities=21% Similarity=0.249 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHh--cCCcEEEEEEcCCCchhhhhccccCCCCCCCcEEEEEeCChHHHhhcCCCceEEcC------CCCH
Q 042822 17 HARASMLYAQLK--KSRKILVILDNVWTELHLKDVGIPFGDEHKGCKVLLTTRGRDLLSRMGSEADVRMD------ILNE 88 (775)
Q Consensus 17 ~~~~~~l~~~l~--~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTTR~~~v~~~~~~~~~~~l~------~L~~ 88 (775)
++....+++.|. .+|||||||||||+.++|+.+ + .|||||||||++.++..+.....|+++ +|+.
T Consensus 228 eeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f----~---pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~ 300 (1221)
T 1vt4_I 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF----N---LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300 (1221)
T ss_dssp HHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH----H---SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCH
T ss_pred HHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh----C---CCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCH
Confidence 445666777662 379999999999999999854 2 689999999999998754433457777 9999
Q ss_pred HHHHHHHHHHhCCCCCcchhhHHHHHHHHHhCCCchhHHHHHHHHhcCC-cHHHHHHHHHHhcCCCcCcchhhhhhHHHH
Q 042822 89 EEAWRLFEVKLGNDGLIRRMKSTATQIVKQCGGLPIALEPIAKALRNKT-ESECWKNALHELRMPTENNFHRELGKAYTA 167 (775)
Q Consensus 89 ~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~ 167 (775)
+|||+||+++.+.. ..+++.+| |+|+||||+++|++|+.+. ..++|+.. . ...+..+
T Consensus 301 eEA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~----------~----~~~I~aa 358 (1221)
T 1vt4_I 301 DEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV----------N----CDKLTTI 358 (1221)
T ss_dssp HHHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC----------S----CHHHHHH
T ss_pred HHHHHHHHHHcCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC----------C----hhHHHHH
Confidence 99999999986432 23344444 9999999999999999883 56668653 1 1278899
Q ss_pred HHhhHhccCchhH-HHHHHhcCCCCCCCChh--hHHHHHhhccccccccHHHHHHHHHHHHHHHHHccceecccccceEE
Q 042822 168 IKLSYDALKGEQL-KKIFQLCSLMPKSFFAS--DLFKYCIGLGIFRGINMEDARNTLYTLVHELKDSCLLLEGYSCREFS 244 (775)
Q Consensus 168 l~~sy~~L~~~~l-k~cf~~~~~fp~~~~~~--~li~~w~a~g~i~~~~~~~~~~~~~~~~~~L~~~sl~~~~~~~~~~~ 244 (775)
+..||+.||++ . |+||+|||+||+++.|. .++.+|+++|. + .+.+++++|+++||++......+|+
T Consensus 359 LelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe------e----dAe~~L~eLvdRSLLq~d~~~~rYr 427 (1221)
T 1vt4_I 359 IESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK------S----DVMVVVNKLHKYSLVEKQPKESTIS 427 (1221)
T ss_dssp HHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS------H----HHHHHHHHHHTSSSSSBCSSSSEEB
T ss_pred HHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH------H----HHHHHHHHHHhhCCEEEeCCCCEEE
Confidence 99999999998 7 99999999999999886 68999998871 1 2455799999999998765567899
Q ss_pred ehHHHHHHH
Q 042822 245 MHDVVHDVA 253 (775)
Q Consensus 245 mHdlv~~l~ 253 (775)
|||++++++
T Consensus 428 MHDLllELr 436 (1221)
T 1vt4_I 428 IPSIYLELK 436 (1221)
T ss_dssp CCCHHHHHH
T ss_pred ehHHHHHHh
Confidence 999999865
No 26
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.94 E-value=4.8e-26 Score=283.43 Aligned_cols=234 Identities=19% Similarity=0.297 Sum_probs=185.9
Q ss_pred HHHHhCCCC-----ccccHHHHHHHHHHHHhcCC--cEEEEEEcCCCchhhhhccccCCCCCCCcEEEEEeCChHHHhh-
Q 042822 3 IAEQIGLTL-----DKETEHARASMLYAQLKKSR--KILVILDNVWTELHLKDVGIPFGDEHKGCKVLLTTRGRDLLSR- 74 (775)
Q Consensus 3 i~~~l~~~~-----~~~~~~~~~~~l~~~l~~~k--r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTTR~~~v~~~- 74 (775)
++..++... ...+.++....++..+. +| ||||||||||+.++|..+ ++|||||||||++.|+..
T Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~ 273 (1249)
T 3sfz_A 202 LCMRLDQEESFSQRLPLNIEEAKDRLRVLML-RKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSV 273 (1249)
T ss_dssp HHHHHTTTCTTCSSCCSSHHHHHHHHHHHTS-SSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTC
T ss_pred HHHHhhhhcccccCCCCCHHHHHHHHHHHHh-ccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhh
Confidence 455555432 13456777888888886 55 999999999999888753 578999999999999865
Q ss_pred cCCCceEEcCC-CCHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHhCCCchhHHHHHHHHhcCCcHHHHHHHHHHhcCCC
Q 042822 75 MGSEADVRMDI-LNEEEAWRLFEVKLGNDGLIRRMKSTATQIVKQCGGLPIALEPIAKALRNKTESECWKNALHELRMPT 153 (775)
Q Consensus 75 ~~~~~~~~l~~-L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~~w~~~l~~l~~~~ 153 (775)
++....+.+++ |+.+||++||...++.. .++..+++++|+++|+|+||||+++|++|+.+.. .|+++++.+....
T Consensus 274 ~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~--~~~~~l~~l~~~~ 349 (1249)
T 3sfz_A 274 MGPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPN--RWAYYLRQLQNKQ 349 (1249)
T ss_dssp CSCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSS--CHHHHHHHHHSCC
T ss_pred cCCceEEEecCCCCHHHHHHHHHHhhCCC--hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChh--HHHHHHHHHhhhh
Confidence 56677899996 99999999999998432 2445678999999999999999999999998863 3999998885543
Q ss_pred cCcc----hhhhhhHHHHHHhhHhccCchhHHHHHHhcCCCCCCCChh--hHHHHHhhccccccccHHHHHHHHHHHHHH
Q 042822 154 ENNF----HRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMPKSFFAS--DLFKYCIGLGIFRGINMEDARNTLYTLVHE 227 (775)
Q Consensus 154 ~~~~----~~~~~~~~~~l~~sy~~L~~~~lk~cf~~~~~fp~~~~~~--~li~~w~a~g~i~~~~~~~~~~~~~~~~~~ 227 (775)
.... ......+..++.+||+.||++ .|+||+|||+||+++.++ .++..|.+++ ..+.+++++
T Consensus 350 ~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~-----------~~~~~~l~~ 417 (1249)
T 3sfz_A 350 FKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLET-----------EEVEDILQE 417 (1249)
T ss_dssp CCCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCH-----------HHHHHHHHH
T ss_pred hhhcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCCH-----------HHHHHHHHH
Confidence 2221 112247999999999999998 699999999999999887 8899996642 344567999
Q ss_pred HHHccceeccccc--ceEEehHHHHHHHHHHHhcc
Q 042822 228 LKDSCLLLEGYSC--REFSMHDVVHDVAILIACGE 260 (775)
Q Consensus 228 L~~~sl~~~~~~~--~~~~mHdlv~~l~~~~~~~e 260 (775)
|+++||++..... .+|+||+++|++++..+.++
T Consensus 418 L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 418 FVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 9999999865333 35999999999999886654
No 27
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=8.2e-25 Score=259.12 Aligned_cols=344 Identities=18% Similarity=0.144 Sum_probs=233.4
Q ss_pred eEEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCC-CC-CcccccccCccEEEcC
Q 042822 284 YAISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLF-SL-PSSIDLLLNLRTLCLD 361 (775)
Q Consensus 284 ~~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~-~l-p~~i~~l~~L~~L~L~ 361 (775)
+..+.+++++..+|. -.+++++|++++|.+. .++...|.++++|++|++++|... .+ |..++++++|++|+|+
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~---~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIR---TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCC---EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCC---ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 455666778889998 5689999999999887 454455699999999999999554 66 7889999999999999
Q ss_pred CCCCCC--ccccccCCcccEEEecCCCCcc-cchh--hhccCCCCEecccCCccccccchHHhhccccccEEEcCCCccc
Q 042822 362 HGTLGD--ITIIGELKNLEILSLIGSDIVE-FPEE--LGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVE 436 (775)
Q Consensus 362 ~~~l~~--p~~i~~l~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 436 (775)
+|.+.. |..++++++|++|++++|.++. +|.. ++++++|++|++++|...+..+...++++++|++|++++|.+.
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 999987 7789999999999999999984 6665 8999999999999985444334334899999999999999876
Q ss_pred ceecccCCccccccccccccCCC--CCCCEEEEEeeCCCCC-CCcc-cc------ccccceEEEecCCCCCCc--cccc-
Q 042822 437 WKVEDEGSSSKRSKASLDELMPL--PRLTTLEIAVENDNAL-PEGF-FV------RELERFKILIGDRSFEPP--VILS- 503 (775)
Q Consensus 437 ~~~~~~~~~~~~~~~~l~~l~~l--~~L~~L~l~~~~~~~~-~~~~-~~------~~L~~L~l~~~~~~~l~~--l~~~- 503 (775)
...+ ..+..+ ++|+.|+++.|..... |..+ .+ ..|+.|++..+......+ +...
T Consensus 162 ~~~~-------------~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l 228 (844)
T 3j0a_A 162 LVCE-------------HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI 228 (844)
T ss_dssp CCCS-------------GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTS
T ss_pred eeCH-------------HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhc
Confidence 4433 344444 6777777776654332 1111 11 136666665443221100 0000
Q ss_pred ------------------ccccc-ccccccccc--cccccceEEEeccCcccc-cccccccccceEEeecccCCcccccc
Q 042822 504 ------------------KDWFR-ISRSHFLIL--DHQSLRMLKLKLNCKTIC-SRKLQGIRKVEYLCLDKFQGVKNILF 561 (775)
Q Consensus 504 ------------------~~~~~-~~~~~~~~~--~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~ 561 (775)
+.... .......+. ..++|+.|+++++..... +..+..+++|+.|++++|......+.
T Consensus 229 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 308 (844)
T 3j0a_A 229 SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE 308 (844)
T ss_dssp CSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT
T ss_pred CcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH
Confidence 00000 000000111 146888999888655443 45566889999999988764332222
Q ss_pred cccccccccCcEEEeecCCCccccccCCCcccCCcccccceeecccccccccccccccCcccccCCCeEEeccCCCCCcc
Q 042822 562 ELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKTICVDRLSTESFAELRTMKVENCDELSNI 641 (775)
Q Consensus 562 ~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l 641 (775)
. ..++++|+.|+++++. ++.+ .......+++|+.|+++++ .+..+. +.....+++|+.|++++| .++.+
T Consensus 309 ~--~~~l~~L~~L~Ls~N~-l~~~----~~~~~~~l~~L~~L~L~~N-~i~~~~--~~~~~~l~~L~~L~Ls~N-~l~~i 377 (844)
T 3j0a_A 309 A--FYGLDNLQVLNLSYNL-LGEL----YSSNFYGLPKVAYIDLQKN-HIAIIQ--DQTFKFLEKLQTLDLRDN-ALTTI 377 (844)
T ss_dssp T--TTTCSSCCEEEEESCC-CSCC----CSCSCSSCTTCCEEECCSC-CCCCCC--SSCSCSCCCCCEEEEETC-CSCCC
T ss_pred H--hcCCCCCCEEECCCCC-CCcc----CHHHhcCCCCCCEEECCCC-CCCccC--hhhhcCCCCCCEEECCCC-CCCcc
Confidence 2 3558899999998875 2222 1224457888999999886 455552 223466888999999886 45554
Q ss_pred ccchhhcCCCCccEEEEeccc
Q 042822 642 FVLSTTKCLPSLQRIAVIKCN 662 (775)
Q Consensus 642 ~~~~~~~~l~~L~~L~l~~C~ 662 (775)
+ .+++|+.|.+.+++
T Consensus 378 ~------~~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 378 H------FIPSIPDIFLSGNK 392 (844)
T ss_dssp S------SCCSCSEEEEESCC
T ss_pred c------CCCCcchhccCCCC
Confidence 3 27788888886653
No 28
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=1.4e-25 Score=241.87 Aligned_cols=304 Identities=14% Similarity=0.199 Sum_probs=195.5
Q ss_pred CCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCC-cccccccCccEEEcCCCCCCC--ccccccCCc
Q 042822 300 LECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLP-SSIDLLLNLRTLCLDHGTLGD--ITIIGELKN 376 (775)
Q Consensus 300 ~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~l~~--p~~i~~l~~ 376 (775)
..+++++.|+++++... .+|..+|..+++|++|++++|.+..+| ..++.+++|++|++++|.+.. |..++++++
T Consensus 42 ~~l~~l~~l~l~~~~l~---~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMR---KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp GGGCCCSEEEEESCEES---EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cccCCceEEEecCCchh---hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 36788888888888766 688887888888899998888888665 478888888999988888877 345788888
Q ss_pred ccEEEecCCCCcccchhh-hccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccceecccCCccccccccccc
Q 042822 377 LEILSLIGSDIVEFPEEL-GKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDE 455 (775)
Q Consensus 377 L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~ 455 (775)
|++|++++|.++.+|..+ +++++|++|++++| .+..+++..++++++|++|++++|.+.. ..
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------~~ 181 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTH----------------VD 181 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSB----------------CC
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCc----------------cc
Confidence 899998888888888764 78888889888887 4556655558888888888888887651 13
Q ss_pred cCCCCCCCEEEEEeeCCCCCCCccccccccceEEEecCCCCCCccccccccccccccccccccccccceEEEeccCcccc
Q 042822 456 LMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNCKTIC 535 (775)
Q Consensus 456 l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 535 (775)
+..+++|+.|+++++....++. +++|+.|+++++.....
T Consensus 182 ~~~l~~L~~L~l~~n~l~~~~~-----------------------------------------~~~L~~L~l~~n~l~~~ 220 (390)
T 3o6n_A 182 LSLIPSLFHANVSYNLLSTLAI-----------------------------------------PIAVEELDASHNSINVV 220 (390)
T ss_dssp GGGCTTCSEEECCSSCCSEEEC-----------------------------------------CSSCSEEECCSSCCCEE
T ss_pred cccccccceeecccccccccCC-----------------------------------------CCcceEEECCCCeeeec
Confidence 5567788888887765543221 33444555544433333
Q ss_pred cccccccccceEEeecccCCcccccccccccccccCcEEEeecCCCccccccCCCcccCCcccccceeeccccccccccc
Q 042822 536 SRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKTIC 615 (775)
Q Consensus 536 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~ 615 (775)
+.. .+++|+.|++++|... ..+ ....+++|+.|+++++. ++.+. ......+++|+.|++.++ .++.+
T Consensus 221 ~~~--~~~~L~~L~l~~n~l~-~~~---~l~~l~~L~~L~Ls~n~-l~~~~----~~~~~~l~~L~~L~L~~n-~l~~~- 287 (390)
T 3o6n_A 221 RGP--VNVELTILKLQHNNLT-DTA---WLLNYPGLVEVDLSYNE-LEKIM----YHPFVKMQRLERLYISNN-RLVAL- 287 (390)
T ss_dssp ECC--CCSSCCEEECCSSCCC-CCG---GGGGCTTCSEEECCSSC-CCEEE----SGGGTTCSSCCEEECCSS-CCCEE-
T ss_pred ccc--ccccccEEECCCCCCc-ccH---HHcCCCCccEEECCCCc-CCCcC----hhHccccccCCEEECCCC-cCccc-
Confidence 322 2355666666655422 211 12345666666666553 22111 112344566666666654 34444
Q ss_pred ccccCcccccCCCeEEeccCCCCCccccchhhcCCCCccEEEEecccchHHHhhccCCCCcccCCCCCCccccccccCeE
Q 042822 616 VDRLSTESFAELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVADNSNANEKIEFAQIRYL 695 (775)
Q Consensus 616 ~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L 695 (775)
+.....+++|++|++++| .++.+|+ .+..+++|++|++++|+ ++.+ ....+++|+.|
T Consensus 288 --~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~N~-i~~~-----------------~~~~~~~L~~L 344 (390)
T 3o6n_A 288 --NLYGQPIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHNS-IVTL-----------------KLSTHHTLKNL 344 (390)
T ss_dssp --ECSSSCCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSSC-CCCC-----------------CCCTTCCCSEE
T ss_pred --CcccCCCCCCCEEECCCC-cceecCc--cccccCcCCEEECCCCc-ccee-----------------CchhhccCCEE
Confidence 223345667777777765 4555554 34556677777776654 2221 12345667777
Q ss_pred ecCCC
Q 042822 696 SLGNL 700 (775)
Q Consensus 696 ~l~~c 700 (775)
+++++
T Consensus 345 ~l~~N 349 (390)
T 3o6n_A 345 TLSHN 349 (390)
T ss_dssp ECCSS
T ss_pred EcCCC
Confidence 77665
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=8.3e-25 Score=231.99 Aligned_cols=304 Identities=17% Similarity=0.231 Sum_probs=226.5
Q ss_pred CCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEEEcCCCCCCCccccccCCcccE
Q 042822 300 LECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGDITIIGELKNLEI 379 (775)
Q Consensus 300 ~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~p~~i~~l~~L~~ 379 (775)
..+++|++|+++++... .++. +..+++|++|++++|.++.+|. ++.+++|++|++++|.++.++.++++++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~---~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~ 114 (347)
T 4fmz_A 41 EELESITKLVVAGEKVA---SIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRE 114 (347)
T ss_dssp HHHTTCSEEECCSSCCC---CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSE
T ss_pred hhcccccEEEEeCCccc---cchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCE
Confidence 37889999999999876 5554 5889999999999999998887 9999999999999999988778999999999
Q ss_pred EEecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccceecccCCccccccccccccCCC
Q 042822 380 LSLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPL 459 (775)
Q Consensus 380 L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l 459 (775)
|++++|.++.+|. +..+++|++|++++|.....++. ++.+++|++|++++|.+.. ...+..+
T Consensus 115 L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~---------------~~~~~~l 176 (347)
T 4fmz_A 115 LYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKD---------------VTPIANL 176 (347)
T ss_dssp EECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCC---------------CGGGGGC
T ss_pred EECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCC---------------chhhccC
Confidence 9999999998887 89999999999999977766665 8999999999999987651 1227788
Q ss_pred CCCCEEEEEeeCCCCCCCccccccccceEEEecCCCCCCccccccccccccccccccccccccceEEEeccCcccccccc
Q 042822 460 PRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNCKTICSRKL 539 (775)
Q Consensus 460 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l 539 (775)
++|+.|+++++....++.... +++|+.|+++++.....+. +
T Consensus 177 ~~L~~L~l~~n~l~~~~~~~~--------------------------------------l~~L~~L~l~~n~l~~~~~-~ 217 (347)
T 4fmz_A 177 TDLYSLSLNYNQIEDISPLAS--------------------------------------LTSLHYFTAYVNQITDITP-V 217 (347)
T ss_dssp TTCSEEECTTSCCCCCGGGGG--------------------------------------CTTCCEEECCSSCCCCCGG-G
T ss_pred CCCCEEEccCCcccccccccC--------------------------------------CCccceeecccCCCCCCch-h
Confidence 999999998887665543212 5566666666554444333 5
Q ss_pred cccccceEEeecccCCcccccccccccccccCcEEEeecCCCccccccCCCcccCCcccccceeeccccccccccccccc
Q 042822 540 QGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKTICVDRL 619 (775)
Q Consensus 540 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~ 619 (775)
..+++|++|++++|.. +..+. ...+++|+.|++++|. ++.+ .....+++|+.|++++| .+..+ .
T Consensus 218 ~~~~~L~~L~l~~n~l-~~~~~---~~~l~~L~~L~l~~n~-l~~~------~~~~~l~~L~~L~l~~n-~l~~~----~ 281 (347)
T 4fmz_A 218 ANMTRLNSLKIGNNKI-TDLSP---LANLSQLTWLEIGTNQ-ISDI------NAVKDLTKLKMLNVGSN-QISDI----S 281 (347)
T ss_dssp GGCTTCCEEECCSSCC-CCCGG---GTTCTTCCEEECCSSC-CCCC------GGGTTCTTCCEEECCSS-CCCCC----G
T ss_pred hcCCcCCEEEccCCcc-CCCcc---hhcCCCCCEEECCCCc-cCCC------hhHhcCCCcCEEEccCC-ccCCC----h
Confidence 5677777777777653 23322 3457788888887763 3322 13456778888888876 44444 1
Q ss_pred CcccccCCCeEEeccCCCCCccccchhhcCCCCccEEEEecccchHHHhhccCCCCcccCCCCCCccccccccCeEecCC
Q 042822 620 STESFAELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVADNSNANEKIEFAQIRYLSLGN 699 (775)
Q Consensus 620 ~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 699 (775)
....+++|++|++++| .++..++ ..+..+++|++|++++|+ ++.+. | ...+++|++|++++
T Consensus 282 ~~~~l~~L~~L~L~~n-~l~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~--------------~--~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 282 VLNNLSQLNSLFLNNN-QLGNEDM-EVIGGLTNLTTLFLSQNH-ITDIR--------------P--LASLSKMDSADFAN 342 (347)
T ss_dssp GGGGCTTCSEEECCSS-CCCGGGH-HHHHTCTTCSEEECCSSS-CCCCG--------------G--GGGCTTCSEESSSC
T ss_pred hhcCCCCCCEEECcCC-cCCCcCh-hHhhccccCCEEEccCCc-ccccc--------------C--hhhhhccceeehhh
Confidence 2456788888888887 4454433 356778888888888876 44332 2 45678888888888
Q ss_pred CC
Q 042822 700 LP 701 (775)
Q Consensus 700 c~ 701 (775)
|+
T Consensus 343 N~ 344 (347)
T 4fmz_A 343 QV 344 (347)
T ss_dssp C-
T ss_pred hc
Confidence 74
No 30
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=4e-24 Score=246.57 Aligned_cols=166 Identities=22% Similarity=0.240 Sum_probs=135.5
Q ss_pred ecCCccCCCCcccccceeEEEEEcCCCCCCCCC-C-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCC
Q 042822 267 RNGDVWEWPDKDALKKCYAISWIDSSGGELPEG-L-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFS 344 (775)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~l~l~~~~~~~lp~~-~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~ 344 (775)
.+..+..+|. ..+..+++|++++|.+..+|+. + ++++|++|++++|.+. .++++.|.++++|++|+|++|+++.
T Consensus 39 ~~~~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~---~i~~~~f~~L~~L~~L~Ls~N~l~~ 114 (635)
T 4g8a_A 39 MELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLILTGNPIQS 114 (635)
T ss_dssp TTSCCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC---EECTTTTTTCTTCCEEECTTCCCCE
T ss_pred CCCCcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC---CcChhHhcCCCCCCEEEccCCcCCC
Confidence 3444555554 4567899999999999999863 3 8999999999999887 6888888999999999999999998
Q ss_pred CCc-ccccccCccEEEcCCCCCCC-c-cccccCCcccEEEecCCCCc--ccchhhhccCCCCEecccCCccccccchHHh
Q 042822 345 LPS-SIDLLLNLRTLCLDHGTLGD-I-TIIGELKNLEILSLIGSDIV--EFPEELGKLTKLRLLDLTNCFHLKVIAANLI 419 (775)
Q Consensus 345 lp~-~i~~l~~L~~L~L~~~~l~~-p-~~i~~l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l 419 (775)
+|. .|+++++|++|++++|.++. + ..++++++|++|++++|.++ .+|..++.+++|++|++++| .+..++...+
T Consensus 115 l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l 193 (635)
T 4g8a_A 115 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDL 193 (635)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGG
T ss_pred CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc-cccccccccc
Confidence 875 58999999999999999988 4 45899999999999999887 46788999999999999998 5556555447
Q ss_pred hcccccc----EEEcCCCcccc
Q 042822 420 ASFTRLE----ELYMSNCFVEW 437 (775)
Q Consensus 420 ~~L~~L~----~L~l~~~~~~~ 437 (775)
+.+.+++ .++++.+.+..
T Consensus 194 ~~L~~l~~~~~~~~ls~n~l~~ 215 (635)
T 4g8a_A 194 RVLHQMPLLNLSLDLSLNPMNF 215 (635)
T ss_dssp HHHHTCTTCCCEEECTTCCCCE
T ss_pred cchhhhhhhhhhhhcccCcccc
Confidence 7666554 56676665543
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=7.8e-25 Score=241.49 Aligned_cols=372 Identities=18% Similarity=0.159 Sum_probs=231.0
Q ss_pred eecCCccCCCCcccccceeEEEEEcCCCCCCC-CCC-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCC
Q 042822 266 VRNGDVWEWPDKDALKKCYAISWIDSSGGELP-EGL-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLF 343 (775)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~lp-~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~ 343 (775)
..+.....+|. .++++++|++++|.+..++ ..+ ++++|++|++++|.... .++...|.++++|++|++++|.+.
T Consensus 17 c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~--~i~~~~~~~l~~L~~L~Ls~n~l~ 92 (455)
T 3v47_A 17 CINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGL--VIRNNTFRGLSSLIILKLDYNQFL 92 (455)
T ss_dssp CCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTC--EECTTTTTTCTTCCEEECTTCTTC
T ss_pred cCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccc--eECcccccccccCCEEeCCCCccC
Confidence 34445555555 5688999999999998774 444 89999999999998764 676677799999999999999999
Q ss_pred CC-CcccccccCccEEEcCCCCCCC--ccc--cccCCcccEEEecCCCCccc-chh-hhccCCCCEecccCCccccccch
Q 042822 344 SL-PSSIDLLLNLRTLCLDHGTLGD--ITI--IGELKNLEILSLIGSDIVEF-PEE-LGKLTKLRLLDLTNCFHLKVIAA 416 (775)
Q Consensus 344 ~l-p~~i~~l~~L~~L~L~~~~l~~--p~~--i~~l~~L~~L~l~~~~l~~l-p~~-i~~l~~L~~L~l~~~~~l~~~p~ 416 (775)
.+ |..++++++|++|++++|.+.. |.. ++++++|++|++++|.++.+ |.. ++++++|++|++++|. +..++.
T Consensus 93 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~ 171 (455)
T 3v47_A 93 QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICE 171 (455)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCT
T ss_pred ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccCh
Confidence 65 7889999999999999999987 554 89999999999999999966 555 8999999999999985 444444
Q ss_pred HHhhcc--ccccEEEcCCCcccceecccCCccccccccccccCCCCCCCEEEEEeeCCCCC-CCcc----ccccccceEE
Q 042822 417 NLIASF--TRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNAL-PEGF----FVRELERFKI 489 (775)
Q Consensus 417 ~~l~~L--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~-~~~~----~~~~L~~L~l 489 (775)
..++.+ .+|+.|++++|.+....+. .........+..+++|+.|++++|..... |..+ ...+++.+.+
T Consensus 172 ~~l~~l~~~~L~~L~l~~n~l~~~~~~-----~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 172 EDLLNFQGKHFTLLRLSSITLQDMNEY-----WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp TTSGGGTTCEEEEEECTTCBCTTCSTT-----CTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred hhhhccccccccccccccCcccccchh-----hccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 337776 7899999999887632220 00011122345678899999998876532 2111 1256666665
Q ss_pred EecCCCCCCccccccccccccccccccccccccceEEEeccCccc-ccccccccccceEEeecccCCccccccccccccc
Q 042822 490 LIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNCKTI-CSRKLQGIRKVEYLCLDKFQGVKNILFELDTQGF 568 (775)
Q Consensus 490 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l 568 (775)
..+........ ...+.........-...++|+.|+++++.... .|.++..+++|++|++++|......+.. ...+
T Consensus 247 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l 322 (455)
T 3v47_A 247 SNSYNMGSSFG--HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA--FWGL 322 (455)
T ss_dssp TTCTTTSCCTT--CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT--TTTC
T ss_pred ccccccccccc--hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhH--hcCc
Confidence 54321110000 00000000000001113567777776644433 2444556667777777666533221211 2345
Q ss_pred ccCcEEEeecCCCccccccCCCcccCCcccccceeecccccccccccccccCcccccCCCeEEeccCCCCCccccchhhc
Q 042822 569 SQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKTICVDRLSTESFAELRTMKVENCDELSNIFVLSTTK 648 (775)
Q Consensus 569 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~ 648 (775)
++|+.|++++|. ++.+. ......+++|+.|+++++. +..+. +.....+++|++|++++| +++.+++ ..+.
T Consensus 323 ~~L~~L~Ls~N~-l~~~~----~~~~~~l~~L~~L~Ls~N~-l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~ 392 (455)
T 3v47_A 323 THLLKLNLSQNF-LGSID----SRMFENLDKLEVLDLSYNH-IRALG--DQSFLGLPNLKELALDTN-QLKSVPD-GIFD 392 (455)
T ss_dssp TTCCEEECCSSC-CCEEC----GGGGTTCTTCCEEECCSSC-CCEEC--TTTTTTCTTCCEEECCSS-CCSCCCT-TTTT
T ss_pred ccCCEEECCCCc-cCCcC----hhHhcCcccCCEEECCCCc-ccccC--hhhccccccccEEECCCC-ccccCCH-hHhc
Confidence 666666666653 22221 1123445666666666653 33321 223345566666666663 4555544 2345
Q ss_pred CCCCccEEEEecc
Q 042822 649 CLPSLQRIAVIKC 661 (775)
Q Consensus 649 ~l~~L~~L~l~~C 661 (775)
.+++|++|+++++
T Consensus 393 ~l~~L~~L~l~~N 405 (455)
T 3v47_A 393 RLTSLQKIWLHTN 405 (455)
T ss_dssp TCTTCCEEECCSS
T ss_pred cCCcccEEEccCC
Confidence 5666666666543
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=1.1e-24 Score=240.38 Aligned_cols=361 Identities=16% Similarity=0.127 Sum_probs=248.8
Q ss_pred EEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCC-CC-CcccccccCccEEEcCC
Q 042822 285 AISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLF-SL-PSSIDLLLNLRTLCLDH 362 (775)
Q Consensus 285 ~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~-~l-p~~i~~l~~L~~L~L~~ 362 (775)
.+...++++..+|. -.++|++|++++|.+. .++...|.++++|++|++++|.+. .+ |..++++++|++|++++
T Consensus 14 ~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 14 NAICINRGLHQVPE--LPAHVNYVDLSLNSIA---ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp EEECCSSCCSSCCC--CCTTCCEEECCSSCCC---EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccCcCCCCcccCCC--CCCccCEEEecCCccC---cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 45666677888887 3488999999999887 455555699999999999999987 55 56799999999999999
Q ss_pred CCCCC--ccccccCCcccEEEecCCCCcc-cchh--hhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccc
Q 042822 363 GTLGD--ITIIGELKNLEILSLIGSDIVE-FPEE--LGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEW 437 (775)
Q Consensus 363 ~~l~~--p~~i~~l~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~ 437 (775)
|.+.. |..++++++|++|++++|.++. +|.. ++++++|++|++++|...+..|...++++++|++|++++|.+..
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 99887 6789999999999999999984 5555 89999999999999854433465557899999999999998875
Q ss_pred eecccCCccccccccccccCCC--CCCCEEEEEeeCCCCCCCcc----------ccccccceEEEecCCCCCCccccccc
Q 042822 438 KVEDEGSSSKRSKASLDELMPL--PRLTTLEIAVENDNALPEGF----------FVRELERFKILIGDRSFEPPVILSKD 505 (775)
Q Consensus 438 ~~~~~~~~~~~~~~~l~~l~~l--~~L~~L~l~~~~~~~~~~~~----------~~~~L~~L~l~~~~~~~l~~l~~~~~ 505 (775)
..+ ..+..+ .+|+.|+++.+....++... ..++|+.|++..+.+... .+..+.
T Consensus 169 ~~~-------------~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~ 233 (455)
T 3v47_A 169 ICE-------------EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES--MAKRFF 233 (455)
T ss_dssp CCT-------------TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHH--HHHHHH
T ss_pred cCh-------------hhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCccccc--chhhhh
Confidence 444 344443 57888999888877665432 225667776654432110 000000
Q ss_pred cccccccccccccccccceEEEeccCccccc-----------cccc--ccccceEEeecccCCcccccccccccccccCc
Q 042822 506 WFRISRSHFLILDHQSLRMLKLKLNCKTICS-----------RKLQ--GIRKVEYLCLDKFQGVKNILFELDTQGFSQLK 572 (775)
Q Consensus 506 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-----------~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~ 572 (775)
.....++|+.|+++++...... ..+. ..++|++|++++|......+.. ...+++|+
T Consensus 234 ---------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~l~~L~ 302 (455)
T 3v47_A 234 ---------DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV--FSHFTDLE 302 (455)
T ss_dssp ---------HHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTT--TTTCTTCC
T ss_pred ---------ccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhh--cccCCCCC
Confidence 0011367777777764222110 1111 2367888888887654333322 34578889
Q ss_pred EEEeecCCCccccccCCCcccCCcccccceeecccccccccccccccCcccccCCCeEEeccCCCCCccccchhhcCCCC
Q 042822 573 HLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKTICVDRLSTESFAELRTMKVENCDELSNIFVLSTTKCLPS 652 (775)
Q Consensus 573 ~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~ 652 (775)
.|+++++. ++.+. ......+++|+.|+++++. +..+. +.....+++|++|++++| .++.+++ ..+..+++
T Consensus 303 ~L~Ls~n~-l~~~~----~~~~~~l~~L~~L~Ls~N~-l~~~~--~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~ 372 (455)
T 3v47_A 303 QLTLAQNE-INKID----DNAFWGLTHLLKLNLSQNF-LGSID--SRMFENLDKLEVLDLSYN-HIRALGD-QSFLGLPN 372 (455)
T ss_dssp EEECTTSC-CCEEC----TTTTTTCTTCCEEECCSSC-CCEEC--GGGGTTCTTCCEEECCSS-CCCEECT-TTTTTCTT
T ss_pred EEECCCCc-ccccC----hhHhcCcccCCEEECCCCc-cCCcC--hhHhcCcccCCEEECCCC-cccccCh-hhcccccc
Confidence 99888875 22221 1134567888899988863 44442 233456888999999886 5566644 35677888
Q ss_pred ccEEEEecccchHHHhhccCCCCcccCCCCCCccccccccCeEecCCCC
Q 042822 653 LQRIAVIKCNKMKEIFAIGGEEPDVADNSNANEKIEFAQIRYLSLGNLP 701 (775)
Q Consensus 653 L~~L~l~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 701 (775)
|++|++++| +++.++ +.....+++|+.|+|++++
T Consensus 373 L~~L~L~~N-~l~~~~--------------~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 373 LKELALDTN-QLKSVP--------------DGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CCEEECCSS-CCSCCC--------------TTTTTTCTTCCEEECCSSC
T ss_pred ccEEECCCC-ccccCC--------------HhHhccCCcccEEEccCCC
Confidence 999998775 344432 2334567888888888764
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=2.9e-24 Score=235.02 Aligned_cols=310 Identities=16% Similarity=0.130 Sum_probs=211.0
Q ss_pred cccceeEEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEE
Q 042822 279 ALKKCYAISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTL 358 (775)
Q Consensus 279 ~~~~~~~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 358 (775)
..+++++|++.++.+..+|....+++|++|++++|.+. .+| +..+++|++|++++|.++.+| ++++++|++|
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~---~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNIT---TLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp HHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCS---CCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred HcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCC---eEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence 35678888888888877775447888888888888776 344 477888888888888888775 7788888888
Q ss_pred EcCCCCCCCccccccCCcccEEEecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccce
Q 042822 359 CLDHGTLGDITIIGELKNLEILSLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWK 438 (775)
Q Consensus 359 ~L~~~~l~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~ 438 (775)
++++|.++..+ ++++++|++|++++|.++.+| ++++++|++|++++|..++.++ ++.+++|++|++++|.+..
T Consensus 112 ~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~- 184 (457)
T 3bz5_A 112 NCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE- 184 (457)
T ss_dssp ECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC-
T ss_pred ECCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce-
Confidence 88888877743 788888888888888888775 7788888888888886666662 6678888888888887651
Q ss_pred ecccCCccccccccccccCCCCCCCEEEEEeeCCCCCCCccccccccceEEEecCCCCCCcccccccccccccccccccc
Q 042822 439 VEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILD 518 (775)
Q Consensus 439 ~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 518 (775)
+ .+..+++|+.|++++|.+..++ +..
T Consensus 185 --------------l-~l~~l~~L~~L~l~~N~l~~~~---------------------------------------l~~ 210 (457)
T 3bz5_A 185 --------------L-DVSQNKLLNRLNCDTNNITKLD---------------------------------------LNQ 210 (457)
T ss_dssp --------------C-CCTTCTTCCEEECCSSCCSCCC---------------------------------------CTT
T ss_pred --------------e-ccccCCCCCEEECcCCcCCeec---------------------------------------ccc
Confidence 1 1667778888888777655431 011
Q ss_pred ccccceEEEeccCcccccccccccccceEEeecccCCcccccccccccccccCcEEEeecCCCccccccCCCcccCCccc
Q 042822 519 HQSLRMLKLKLNCKTICSRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFP 598 (775)
Q Consensus 519 ~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p 598 (775)
+++|+.|+++++.....| +..+++|++|++++|... ..+ ...+++|+.|++.+ .
T Consensus 211 l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~-~~~----~~~l~~L~~L~l~~-------------------n 264 (457)
T 3bz5_A 211 NIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLT-ELD----VSTLSKLTTLHCIQ-------------------T 264 (457)
T ss_dssp CTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCS-CCC----CTTCTTCCEEECTT-------------------C
T ss_pred CCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCC-CcC----HHHCCCCCEEeccC-------------------C
Confidence 677777888776666555 667888888888887533 222 34577777777643 2
Q ss_pred ccceeecccccccccccccccCcccccCCCeEEeccCCCCCccccchhhcCCCCccEEEEecccchHHHhhccCCCCccc
Q 042822 599 LLELLSLQNLINLKTICVDRLSTESFAELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVA 678 (775)
Q Consensus 599 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~~~~ 678 (775)
+|+.|++.+|..+..++ .+.+++|+.|++++|+.++.+|. ..++|+.|++++|++|+.+....+...+
T Consensus 265 ~L~~L~l~~n~~~~~~~-----~~~l~~L~~L~Ls~n~~l~~l~~-----~~~~L~~L~l~~~~~L~~L~L~~N~l~~-- 332 (457)
T 3bz5_A 265 DLLEIDLTHNTQLIYFQ-----AEGCRKIKELDVTHNTQLYLLDC-----QAAGITELDLSQNPKLVYLYLNNTELTE-- 332 (457)
T ss_dssp CCSCCCCTTCTTCCEEE-----CTTCTTCCCCCCTTCTTCCEEEC-----TTCCCSCCCCTTCTTCCEEECTTCCCSC--
T ss_pred CCCEEECCCCccCCccc-----ccccccCCEEECCCCcccceecc-----CCCcceEechhhcccCCEEECCCCcccc--
Confidence 45666777776555552 24567777777777777666653 3455666666666666555322222111
Q ss_pred CCCCCCccccccccCeEecCCC
Q 042822 679 DNSNANEKIEFAQIRYLSLGNL 700 (775)
Q Consensus 679 ~~~~~~~~~~~~~L~~L~l~~c 700 (775)
..+..+++|+.|+++++
T Consensus 333 -----l~l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 333 -----LDVSHNTKLKSLSCVNA 349 (457)
T ss_dssp -----CCCTTCTTCSEEECCSS
T ss_pred -----cccccCCcCcEEECCCC
Confidence 01344566666666554
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=7.8e-25 Score=249.17 Aligned_cols=304 Identities=15% Similarity=0.218 Sum_probs=190.2
Q ss_pred CCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCC-cccccccCccEEEcCCCCCCC-c-cccccCCc
Q 042822 300 LECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLP-SSIDLLLNLRTLCLDHGTLGD-I-TIIGELKN 376 (775)
Q Consensus 300 ~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~l~~-p-~~i~~l~~ 376 (775)
+.+++++.|++++|.+. .+|..+|..+++|++|++++|.+..+| ..++.+++|++|++++|.+.. | ..++++++
T Consensus 48 l~l~~l~~l~l~~~~l~---~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMR---KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124 (597)
T ss_dssp GGGCCCSEEEESSCEES---EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ccCCCceEEEeeCCCCC---CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence 36778888888888766 688888888899999999999888665 478888999999999988887 3 45788899
Q ss_pred ccEEEecCCCCcccchh-hhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccceecccCCccccccccccc
Q 042822 377 LEILSLIGSDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDE 455 (775)
Q Consensus 377 L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~ 455 (775)
|++|++++|.++.+|.. ++++++|++|++++| .+..+++..++++++|++|++++|.+.. ..
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~----------------~~ 187 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTH----------------VD 187 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSB----------------CC
T ss_pred CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCC----------------cC
Confidence 99999999988888876 488899999999888 4555555458888999999998887652 13
Q ss_pred cCCCCCCCEEEEEeeCCCCCCCccccccccceEEEecCCCCCCccccccccccccccccccccccccceEEEeccCcccc
Q 042822 456 LMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNCKTIC 535 (775)
Q Consensus 456 l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 535 (775)
++.+++|+.|++++|....++. ..+|+.|++..+....++.. ..++|+.|+++++....
T Consensus 188 ~~~l~~L~~L~l~~n~l~~l~~---~~~L~~L~ls~n~l~~~~~~-----------------~~~~L~~L~L~~n~l~~- 246 (597)
T 3oja_B 188 LSLIPSLFHANVSYNLLSTLAI---PIAVEELDASHNSINVVRGP-----------------VNVELTILKLQHNNLTD- 246 (597)
T ss_dssp GGGCTTCSEEECCSSCCSEEEC---CTTCSEEECCSSCCCEEECS-----------------CCSCCCEEECCSSCCCC-
T ss_pred hhhhhhhhhhhcccCccccccC---CchhheeeccCCcccccccc-----------------cCCCCCEEECCCCCCCC-
Confidence 5567788888888776554322 23445554443332111100 03456666666544333
Q ss_pred cccccccccceEEeecccCCcccccccccccccccCcEEEeecCCCccccccCCCcccCCcccccceeeccccccccccc
Q 042822 536 SRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKTIC 615 (775)
Q Consensus 536 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~ 615 (775)
+.++..+++|+.|++++|......+.. ...+++|+.|+++++. +..+. .....+|+|+.|+++++. +..+
T Consensus 247 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~Ls~N~-l~~l~-----~~~~~l~~L~~L~Ls~N~-l~~i- 316 (597)
T 3oja_B 247 TAWLLNYPGLVEVDLSYNELEKIMYHP--FVKMQRLERLYISNNR-LVALN-----LYGQPIPTLKVLDLSHNH-LLHV- 316 (597)
T ss_dssp CGGGGGCTTCSEEECCSSCCCEEESGG--GTTCSSCCEEECTTSC-CCEEE-----CSSSCCTTCCEEECCSSC-CCCC-
T ss_pred ChhhccCCCCCEEECCCCccCCCCHHH--hcCccCCCEEECCCCC-CCCCC-----cccccCCCCcEEECCCCC-CCcc-
Confidence 344556666666666665433222222 2335666666665543 22221 122345556666665542 3333
Q ss_pred ccccCcccccCCCeEEeccCCCCCccccchhhcCCCCccEEEEecc
Q 042822 616 VDRLSTESFAELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKC 661 (775)
Q Consensus 616 ~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C 661 (775)
+.....+++|+.|++++| .++.++ +..+++|+.|+++++
T Consensus 317 --~~~~~~l~~L~~L~L~~N-~l~~~~----~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 317 --ERNQPQFDRLENLYLDHN-SIVTLK----LSTHHTLKNLTLSHN 355 (597)
T ss_dssp --GGGHHHHTTCSEEECCSS-CCCCCC----CCTTCCCSEEECCSS
T ss_pred --CcccccCCCCCEEECCCC-CCCCcC----hhhcCCCCEEEeeCC
Confidence 222344555666666554 234332 244555555555543
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=6.3e-24 Score=228.92 Aligned_cols=303 Identities=17% Similarity=0.194 Sum_probs=235.4
Q ss_pred ccccceeEEEEEcCCCCCCCCCC--CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCC-cccccccC
Q 042822 278 DALKKCYAISWIDSSGGELPEGL--ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLP-SSIDLLLN 354 (775)
Q Consensus 278 ~~~~~~~~l~l~~~~~~~lp~~~--~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~ 354 (775)
....+++++++.++.+..+|... .+++|++|++++|.+. .++...|..+++|++|++++|.+..+| ..++++++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE---EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc---ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 34678999999999999999864 8999999999999877 567666799999999999999999775 56899999
Q ss_pred ccEEEcCCCCCCC-ccc-cccCCcccEEEecCCCCcccch-hhhccCCCCEecccCCccccccchHHhhccccccEEEcC
Q 042822 355 LRTLCLDHGTLGD-ITI-IGELKNLEILSLIGSDIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMS 431 (775)
Q Consensus 355 L~~L~L~~~~l~~-p~~-i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~ 431 (775)
|++|++++|.++. |+. ++++++|++|++++|.++.++. .++.+++|++|++++| .++.++ ++.+++|++|+++
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~---~~~l~~L~~L~l~ 194 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVS 194 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCC---GGGCTTCSEEECC
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccc---cccccccceeecc
Confidence 9999999999998 555 6899999999999999997754 5899999999999998 566664 5678999999999
Q ss_pred CCcccceecccCCccccccccccccCCCCCCCEEEEEeeCCCCCCCccccccccceEEEecCCCCCCccccccccccccc
Q 042822 432 NCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISR 511 (775)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~ 511 (775)
+|.+. .+...++|+.|+++++....+|.. .
T Consensus 195 ~n~l~------------------~~~~~~~L~~L~l~~n~l~~~~~~-~------------------------------- 224 (390)
T 3o6n_A 195 YNLLS------------------TLAIPIAVEELDASHNSINVVRGP-V------------------------------- 224 (390)
T ss_dssp SSCCS------------------EEECCSSCSEEECCSSCCCEEECC-C-------------------------------
T ss_pred ccccc------------------ccCCCCcceEEECCCCeeeecccc-c-------------------------------
Confidence 98764 234456899999998876654331 0
Q ss_pred cccccccccccceEEEeccCcccccccccccccceEEeecccCCcccccccccccccccCcEEEeecCCCccccccCCCc
Q 042822 512 SHFLILDHQSLRMLKLKLNCKTICSRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREI 591 (775)
Q Consensus 512 ~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~ 591 (775)
+++|+.|+++++..... .++..+++|++|++++|......+.. ...+++|+.|+++++. ++.+.
T Consensus 225 -------~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n~-l~~~~----- 288 (390)
T 3o6n_A 225 -------NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHP--FVKMQRLERLYISNNR-LVALN----- 288 (390)
T ss_dssp -------CSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGG--GTTCSSCCEEECCSSC-CCEEE-----
T ss_pred -------cccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhH--ccccccCCEEECCCCc-CcccC-----
Confidence 45677777776554443 56678888888888887543322222 3457889999988864 44332
Q ss_pred ccCCcccccceeecccccccccccccccCcccccCCCeEEeccCCCCCccccchhhcCCCCccEEEEeccc
Q 042822 592 VDCDAFPLLELLSLQNLINLKTICVDRLSTESFAELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCN 662 (775)
Q Consensus 592 ~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~ 662 (775)
.....+|+|+.|+++++ .+..+ +.....+++|++|++++| .++.++ +..+++|+.|++++++
T Consensus 289 ~~~~~l~~L~~L~L~~n-~l~~~---~~~~~~l~~L~~L~L~~N-~i~~~~----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 289 LYGQPIPTLKVLDLSHN-HLLHV---ERNQPQFDRLENLYLDHN-SIVTLK----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CSSSCCTTCCEEECCSS-CCCCC---GGGHHHHTTCSEEECCSS-CCCCCC----CCTTCCCSEEECCSSC
T ss_pred cccCCCCCCCEEECCCC-cceec---CccccccCcCCEEECCCC-ccceeC----chhhccCCEEEcCCCC
Confidence 12356889999999987 46666 344567899999999996 466664 4678999999998754
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=4.3e-23 Score=233.54 Aligned_cols=148 Identities=19% Similarity=0.253 Sum_probs=121.9
Q ss_pred CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCC-cccccccCccEEEcCCCCCCC--ccccccCCcc
Q 042822 301 ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLP-SSIDLLLNLRTLCLDHGTLGD--ITIIGELKNL 377 (775)
Q Consensus 301 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~l~~--p~~i~~l~~L 377 (775)
.+...++++++++... .+|..++ ++|++|++++|.+..+| ..++++++|++|++++|.++. |..++++++|
T Consensus 29 ~~~~~~~l~ls~~~L~---~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 102 (562)
T 3a79_B 29 SNELESMVDYSNRNLT---HVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDL 102 (562)
T ss_dssp ----CCEEECTTSCCC---SCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred ccCCCcEEEcCCCCCc---cCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCC
Confidence 4556689999999887 6887653 79999999999999886 689999999999999999988 5679999999
Q ss_pred cEEEecCCCCcccchhhhccCCCCEecccCCccccccc--hHHhhccccccEEEcCCCcccceecccCCccccccccccc
Q 042822 378 EILSLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIA--ANLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDE 455 (775)
Q Consensus 378 ~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p--~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~ 455 (775)
++|++++|.++.+|.. .+++|++|++++| .+..++ .. ++++++|++|++++|.+.. ..+..
T Consensus 103 ~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~-~~~l~~L~~L~L~~n~l~~-------------~~~~~ 165 (562)
T 3a79_B 103 EYLDVSHNRLQNISCC--PMASLRHLDLSFN-DFDVLPVCKE-FGNLTKLTFLGLSAAKFRQ-------------LDLLP 165 (562)
T ss_dssp CEEECTTSCCCEECSC--CCTTCSEEECCSS-CCSBCCCCGG-GGGCTTCCEEEEECSBCCT-------------TTTGG
T ss_pred CEEECCCCcCCccCcc--ccccCCEEECCCC-CccccCchHh-hcccCcccEEecCCCcccc-------------Cchhh
Confidence 9999999999999987 8999999999998 466654 45 9999999999999988752 12233
Q ss_pred cCCCCCCCEEEEEeeCC
Q 042822 456 LMPLPRLTTLEIAVEND 472 (775)
Q Consensus 456 l~~l~~L~~L~l~~~~~ 472 (775)
+.++ +|+.|++++|..
T Consensus 166 l~~L-~L~~L~L~~n~l 181 (562)
T 3a79_B 166 VAHL-HLSCILLDLVSY 181 (562)
T ss_dssp GTTS-CEEEEEEEESSC
T ss_pred hhhc-eeeEEEeecccc
Confidence 3344 449999998876
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=1.7e-23 Score=232.02 Aligned_cols=172 Identities=23% Similarity=0.298 Sum_probs=92.0
Q ss_pred EEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCC-CcccccccCccEEEcCCCC
Q 042822 286 ISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSL-PSSIDLLLNLRTLCLDHGT 364 (775)
Q Consensus 286 l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~ 364 (775)
+...++.+..+|..+ .+++++|++++|.+. .++...|.++++|++|++++|.++.+ |..++++++|++|++++|.
T Consensus 16 v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 16 VLCHRKRFVAVPEGI-PTETRLLDLGKNRIK---TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp EECCSCCCSSCCSCC-CTTCSEEECCSSCCC---EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEeCCCCcCcCCCCC-CCCCcEEECCCCccc---eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 333344445555433 245566666666554 34434445666666666666666543 4556666666666666666
Q ss_pred CCC-cc-ccccCCcccEEEecCCCCccc-chhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccceecc
Q 042822 365 LGD-IT-IIGELKNLEILSLIGSDIVEF-PEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKVED 441 (775)
Q Consensus 365 l~~-p~-~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~ 441 (775)
++. |. .++++++|++|++++|.++.+ |..+.++++|++|++++| .+..++...++++++|++|++++|.+....+
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~- 169 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLTSIPT- 169 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCCCSSCCH-
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCcCcccCh-
Confidence 555 32 355566666666666655533 344556666666666665 3333333335566666666666655442111
Q ss_pred cCCccccccccccccCCCCCCCEEEEEeeCCCCC
Q 042822 442 EGSSSKRSKASLDELMPLPRLTTLEIAVENDNAL 475 (775)
Q Consensus 442 ~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~ 475 (775)
..+..+++|+.|+++.+....+
T Consensus 170 ------------~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 170 ------------EALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp ------------HHHTTCTTCCEEEEESCCCCEE
T ss_pred ------------hHhcccCCCcEEeCCCCcCcEe
Confidence 3355556666666665554433
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=2e-23 Score=228.34 Aligned_cols=264 Identities=17% Similarity=0.170 Sum_probs=207.4
Q ss_pred CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEEEcCCCCCCCccccccCCcccEE
Q 042822 301 ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGDITIIGELKNLEIL 380 (775)
Q Consensus 301 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~p~~i~~l~~L~~L 380 (775)
.+++|++|++++|.+. .+| + +..+++|++|++++|.++.+| ++.+++|++|++++|.++..+ ++++++|++|
T Consensus 40 ~l~~L~~L~Ls~n~l~---~~~-~-l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L 111 (457)
T 3bz5_A 40 QLATLTSLDCHNSSIT---DMT-G-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYL 111 (457)
T ss_dssp HHTTCCEEECCSSCCC---CCT-T-GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEE
T ss_pred HcCCCCEEEccCCCcc---cCh-h-hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEE
Confidence 6788999999999877 455 3 588999999999999999886 889999999999999988853 8899999999
Q ss_pred EecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccceecccCCccccccccccccCCCC
Q 042822 381 SLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLP 460 (775)
Q Consensus 381 ~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~ 460 (775)
++++|.++.+| ++++++|++|++++| .++.++ ++++++|++|++++|...+.+ .++.++
T Consensus 112 ~L~~N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~---l~~l~~L~~L~l~~n~~~~~~---------------~~~~l~ 170 (457)
T 3bz5_A 112 NCDTNKLTKLD--VSQNPLLTYLNCARN-TLTEID---VSHNTQLTELDCHLNKKITKL---------------DVTPQT 170 (457)
T ss_dssp ECCSSCCSCCC--CTTCTTCCEEECTTS-CCSCCC---CTTCTTCCEEECTTCSCCCCC---------------CCTTCT
T ss_pred ECCCCcCCeec--CCCCCcCCEEECCCC-ccceec---cccCCcCCEEECCCCCccccc---------------ccccCC
Confidence 99999999886 889999999999998 566663 778999999999988544211 467788
Q ss_pred CCCEEEEEeeCCCCCCCccccccccceEEEecCCCCCCccccccccccccccccccccccccceEEEeccCccccccccc
Q 042822 461 RLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNCKTICSRKLQ 540 (775)
Q Consensus 461 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 540 (775)
+|+.|++++|.+..+|- ..+++|+.|+++++..... .+.
T Consensus 171 ~L~~L~ls~n~l~~l~l---------------------------------------~~l~~L~~L~l~~N~l~~~--~l~ 209 (457)
T 3bz5_A 171 QLTTLDCSFNKITELDV---------------------------------------SQNKLLNRLNCDTNNITKL--DLN 209 (457)
T ss_dssp TCCEEECCSSCCCCCCC---------------------------------------TTCTTCCEEECCSSCCSCC--CCT
T ss_pred cCCEEECCCCccceecc---------------------------------------ccCCCCCEEECcCCcCCee--ccc
Confidence 99999998877665431 1167778888877655554 366
Q ss_pred ccccceEEeecccCCcccccccccccccccCcEEEeecCCCccccccCCCcccCCcccccceeecccccccccccccccC
Q 042822 541 GIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKTICVDRLS 620 (775)
Q Consensus 541 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~ 620 (775)
.+++|++|++++|... .++ ...+++|+.|+++++. ++.+ ..+.+++|+.|.+.+
T Consensus 210 ~l~~L~~L~Ls~N~l~-~ip----~~~l~~L~~L~l~~N~-l~~~-------~~~~l~~L~~L~l~~------------- 263 (457)
T 3bz5_A 210 QNIQLTFLDCSSNKLT-EID----VTPLTQLTYFDCSVNP-LTEL-------DVSTLSKLTTLHCIQ------------- 263 (457)
T ss_dssp TCTTCSEEECCSSCCS-CCC----CTTCTTCSEEECCSSC-CSCC-------CCTTCTTCCEEECTT-------------
T ss_pred cCCCCCEEECcCCccc-ccC----ccccCCCCEEEeeCCc-CCCc-------CHHHCCCCCEEeccC-------------
Confidence 8899999999988643 343 4568999999999874 3322 345677888777653
Q ss_pred cccccCCCeEEeccCCCCCccccchhhcCCCCccEEEEecccchHHHh
Q 042822 621 TESFAELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIF 668 (775)
Q Consensus 621 ~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~~L~~l~ 668 (775)
.+|+.|++++|+.+..+|. ..+++|+.|++++|+.+..++
T Consensus 264 ----n~L~~L~l~~n~~~~~~~~----~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 264 ----TDLLEIDLTHNTQLIYFQA----EGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp ----CCCSCCCCTTCTTCCEEEC----TTCTTCCCCCCTTCTTCCEEE
T ss_pred ----CCCCEEECCCCccCCcccc----cccccCCEEECCCCcccceec
Confidence 3678888999988887753 678999999999999777664
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=3.8e-23 Score=235.25 Aligned_cols=301 Identities=18% Similarity=0.189 Sum_probs=241.7
Q ss_pred cccceeEEEEEcCCCCCCCCCC--CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCc-ccccccCc
Q 042822 279 ALKKCYAISWIDSSGGELPEGL--ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPS-SIDLLLNL 355 (775)
Q Consensus 279 ~~~~~~~l~l~~~~~~~lp~~~--~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L 355 (775)
...+++.+++.++.++.+|... .+++|++|++++|.+. .++...|..+++|++|++++|.++.+|. .++++++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE---EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC---CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 4567899999999999999865 7999999999999887 5666567999999999999999997765 57999999
Q ss_pred cEEEcCCCCCCC-ccc-cccCCcccEEEecCCCCcccch-hhhccCCCCEecccCCccccccchHHhhccccccEEEcCC
Q 042822 356 RTLCLDHGTLGD-ITI-IGELKNLEILSLIGSDIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSN 432 (775)
Q Consensus 356 ~~L~L~~~~l~~-p~~-i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~ 432 (775)
++|++++|.+.. |+. ++++++|++|++++|.++.+|. .++++++|++|++++| .+..++ ++.+++|++|++++
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~---~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVSY 201 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC---GGGCTTCSEEECCS
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcC---hhhhhhhhhhhccc
Confidence 999999999998 555 6999999999999999997655 6999999999999998 566665 56789999999999
Q ss_pred CcccceecccCCccccccccccccCCCCCCCEEEEEeeCCCCCCCccccccccceEEEecCCCCCCcccccccccccccc
Q 042822 433 CFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRS 512 (775)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~ 512 (775)
|.+. .+...++|+.|++++|.+..++... .++|+.|++..+.+...+.
T Consensus 202 n~l~------------------~l~~~~~L~~L~ls~n~l~~~~~~~-~~~L~~L~L~~n~l~~~~~------------- 249 (597)
T 3oja_B 202 NLLS------------------TLAIPIAVEELDASHNSINVVRGPV-NVELTILKLQHNNLTDTAW------------- 249 (597)
T ss_dssp SCCS------------------EEECCTTCSEEECCSSCCCEEECSC-CSCCCEEECCSSCCCCCGG-------------
T ss_pred Cccc------------------cccCCchhheeeccCCccccccccc-CCCCCEEECCCCCCCCChh-------------
Confidence 8765 3345568999999999887776543 3688999888776544322
Q ss_pred ccccccccccceEEEeccCcccc-cccccccccceEEeecccCCcccccccccccccccCcEEEeecCCCccccccCCCc
Q 042822 513 HFLILDHQSLRMLKLKLNCKTIC-SRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREI 591 (775)
Q Consensus 513 ~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~ 591 (775)
+..+++|+.|+++++..... |..+..+++|++|++++|.. ..++.. ...+++|+.|++++|. +..+.
T Consensus 250 ---l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~--~~~l~~L~~L~Ls~N~-l~~i~----- 317 (597)
T 3oja_B 250 ---LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VALNLY--GQPIPTLKVLDLSHNH-LLHVE----- 317 (597)
T ss_dssp ---GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC-CEEECS--SSCCTTCCEEECCSSC-CCCCG-----
T ss_pred ---hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC-CCCCcc--cccCCCCcEEECCCCC-CCccC-----
Confidence 22389999999999766554 66778999999999999864 444433 3558999999999985 33332
Q ss_pred ccCCcccccceeecccccccccccccccCcccccCCCeEEeccCC
Q 042822 592 VDCDAFPLLELLSLQNLINLKTICVDRLSTESFAELRTMKVENCD 636 (775)
Q Consensus 592 ~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~ 636 (775)
.....+++|+.|+++++. +..+ ....+++|+.|++++++
T Consensus 318 ~~~~~l~~L~~L~L~~N~-l~~~-----~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 318 RNQPQFDRLENLYLDHNS-IVTL-----KLSTHHTLKNLTLSHND 356 (597)
T ss_dssp GGHHHHTTCSEEECCSSC-CCCC-----CCCTTCCCSEEECCSSC
T ss_pred cccccCCCCCEEECCCCC-CCCc-----ChhhcCCCCEEEeeCCC
Confidence 133568999999999975 4444 35678999999999975
No 40
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=3.5e-23 Score=226.28 Aligned_cols=336 Identities=18% Similarity=0.134 Sum_probs=161.7
Q ss_pred ccceeEEEEEcCCCCCCCCCC-CCCCccEEEcccCCCCCccccChhhhhCCCcc-------------cEEEecCCCCCCC
Q 042822 280 LKKCYAISWIDSSGGELPEGL-ECPQLELLLLSSKHSSVDVNIPRSFFTGMREL-------------KVVDLTNMQLFSL 345 (775)
Q Consensus 280 ~~~~~~l~l~~~~~~~lp~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L-------------~~L~l~~~~~~~l 345 (775)
...++.+.++++.++.+|..+ ++++|++|++++|...+ .+|.++ +++++| ++|++++|.++.+
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~--~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l 86 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWER--NAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSL 86 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHH--TSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccc--cCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccC
Confidence 456788888888888888766 78888888888876554 566554 555553 7778887777777
Q ss_pred CcccccccCccEEEcCCCCCCC-ccccccCCcccEEEecCCCCcccchhhhccCCCCEecccCCccccccchHHhhcccc
Q 042822 346 PSSIDLLLNLRTLCLDHGTLGD-ITIIGELKNLEILSLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTR 424 (775)
Q Consensus 346 p~~i~~l~~L~~L~L~~~~l~~-p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~ 424 (775)
|.. .++|++|++++|.++. |.. +.+|++|++++|.++.+|.. .++|++|++++| .++.+| . ++++++
T Consensus 87 p~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n-~l~~lp-~-~~~l~~ 154 (454)
T 1jl5_A 87 PEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNN-QLEKLP-E-LQNSSF 154 (454)
T ss_dssp CSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSS-CCSSCC-C-CTTCTT
T ss_pred CCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCC-CCCCCc-c-cCCCCC
Confidence 663 3567777777777766 332 35666777766666655532 156667777666 444566 3 666667
Q ss_pred ccEEEcCCCcccceecccCCc------cccccccccccCCCCCCCEEEEEeeCCCCCCCccccccccceEEEecCCCCCC
Q 042822 425 LEELYMSNCFVEWKVEDEGSS------SKRSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEP 498 (775)
Q Consensus 425 L~~L~l~~~~~~~~~~~~~~~------~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~ 498 (775)
|++|++++|.+.. +|..... .......+.+++.+++|+.|++++|....+|.. ..+|+.|++..+....+|
T Consensus 155 L~~L~l~~N~l~~-lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~n~l~~lp 231 (454)
T 1jl5_A 155 LKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDL--PLSLESIVAGNNILEELP 231 (454)
T ss_dssp CCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSSCC
T ss_pred CCEEECCCCcCcc-cCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCC--cCcccEEECcCCcCCccc
Confidence 7777766666542 2200000 000000011234444444444444444443332 134444444433333222
Q ss_pred ccccccccccccccccccccccccceEEEeccCcccccccccccccceEEeecccCCcccccccccccccccCcEEEeec
Q 042822 499 PVILSKDWFRISRSHFLILDHQSLRMLKLKLNCKTICSRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQN 578 (775)
Q Consensus 499 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 578 (775)
.+ ..+++|+.|+++++.....|. .+++|++|++++|.. +.++. .+++|+.|++++
T Consensus 232 ~~----------------~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~N~l-~~l~~-----~~~~L~~L~ls~ 286 (454)
T 1jl5_A 232 EL----------------QNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYL-TDLPE-----LPQSLTFLDVSE 286 (454)
T ss_dssp CC----------------TTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCC-SCCCC-----CCTTCCEEECCS
T ss_pred cc----------------CCCCCCCEEECCCCcCCcccc---cccccCEEECCCCcc-cccCc-----ccCcCCEEECcC
Confidence 11 115555555555544433332 134555555555432 22211 134555555555
Q ss_pred CCCccccccCCCcccCCcccccceeecccccccccccccccCcccc-cCCCeEEeccCCCCCccccchhhcCCCCccEEE
Q 042822 579 NPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKTICVDRLSTESF-AELRTMKVENCDELSNIFVLSTTKCLPSLQRIA 657 (775)
Q Consensus 579 ~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~-~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~ 657 (775)
|. ++.+. ...++|+.|+++++ .+..++ .+ ++|++|++++| +++.+|. .+++|++|+
T Consensus 287 N~-l~~l~--------~~~~~L~~L~l~~N-~l~~i~-------~~~~~L~~L~Ls~N-~l~~lp~-----~~~~L~~L~ 343 (454)
T 1jl5_A 287 NI-FSGLS--------ELPPNLYYLNASSN-EIRSLC-------DLPPSLEELNVSNN-KLIELPA-----LPPRLERLI 343 (454)
T ss_dssp SC-CSEES--------CCCTTCCEEECCSS-CCSEEC-------CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEE
T ss_pred Cc-cCccc--------CcCCcCCEEECcCC-cCCccc-------CCcCcCCEEECCCC-ccccccc-----cCCcCCEEE
Confidence 43 22110 11245666666654 233331 12 46777777764 4555544 256777777
Q ss_pred EecccchHHHhhccCCCCcccCCCCCCccccccccCeEecCCC
Q 042822 658 VIKCNKMKEIFAIGGEEPDVADNSNANEKIEFAQIRYLSLGNL 700 (775)
Q Consensus 658 l~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 700 (775)
+++| +++.+ |. .+++|++|+++++
T Consensus 344 L~~N-~l~~l---------------p~---~l~~L~~L~L~~N 367 (454)
T 1jl5_A 344 ASFN-HLAEV---------------PE---LPQNLKQLHVEYN 367 (454)
T ss_dssp CCSS-CCSCC---------------CC---CCTTCCEEECCSS
T ss_pred CCCC-ccccc---------------cc---hhhhccEEECCCC
Confidence 7665 34333 22 3677888888776
No 41
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.90 E-value=8.3e-23 Score=232.56 Aligned_cols=221 Identities=19% Similarity=0.297 Sum_probs=171.2
Q ss_pred cccHHHHHHHHHHHHhcC-CcEEEEEEcCCCchhhhhccccCCCCCCCcEEEEEeCChHHHhhcCCCceEEc---CCCCH
Q 042822 13 KETEHARASMLYAQLKKS-RKILVILDNVWTELHLKDVGIPFGDEHKGCKVLLTTRGRDLLSRMGSEADVRM---DILNE 88 (775)
Q Consensus 13 ~~~~~~~~~~l~~~l~~~-kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTTR~~~v~~~~~~~~~~~l---~~L~~ 88 (775)
..+.......+++.+... +|+||||||||+..+++.+ +.|++||||||+..++..++ ...+++ ++|+.
T Consensus 217 ~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~L~~ 288 (591)
T 1z6t_A 217 PLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVM-GPKYVVPVESSLGK 288 (591)
T ss_dssp CCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTCC-SCEEEEECCSSCCH
T ss_pred CCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhcC-CCceEeecCCCCCH
Confidence 345667777888888632 7999999999998776632 46899999999999887654 345555 58999
Q ss_pred HHHHHHHHHHhCCCCCcchhhHHHHHHHHHhCCCchhHHHHHHHHhcCCcHHHHHHHHHHhcCCCcCcc----hhhhhhH
Q 042822 89 EEAWRLFEVKLGNDGLIRRMKSTATQIVKQCGGLPIALEPIAKALRNKTESECWKNALHELRMPTENNF----HRELGKA 164 (775)
Q Consensus 89 ~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~~w~~~l~~l~~~~~~~~----~~~~~~~ 164 (775)
+||++||...++.. .....+.+.+|+++|+|+||||+.+|++++.+.. +|+.+++.+........ ......+
T Consensus 289 ~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~--~w~~~l~~l~~~~~~~~~~~~~~~~~~l 364 (591)
T 1z6t_A 289 EKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFPN--RWEYYLKQLQNKQFKRIRKSSSYDYEAL 364 (591)
T ss_dssp HHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTT--CHHHHHHHHHSCCCCCSSCCCSSCCHHH
T ss_pred HHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCch--hHHHHHHHHHHhHHHHhhhccccchHHH
Confidence 99999999998642 2334567899999999999999999999998753 49988888764332111 1122378
Q ss_pred HHHHHhhHhccCchhHHHHHHhcCCCCCCCChh--hHHHHHhhccccccccHHHHHHHHHHHHHHHHHccceeccc--cc
Q 042822 165 YTAIKLSYDALKGEQLKKIFQLCSLMPKSFFAS--DLFKYCIGLGIFRGINMEDARNTLYTLVHELKDSCLLLEGY--SC 240 (775)
Q Consensus 165 ~~~l~~sy~~L~~~~lk~cf~~~~~fp~~~~~~--~li~~w~a~g~i~~~~~~~~~~~~~~~~~~L~~~sl~~~~~--~~ 240 (775)
..++..||+.||++ .|.||++||+||+++.++ .+...|.++ . ..+.+++++|+++||+.... ..
T Consensus 365 ~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------~----~~~~~~l~~L~~~~Ll~~~~~~~~ 432 (591)
T 1z6t_A 365 DEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDME-------T----EEVEDILQEFVNKSLLFCDRNGKS 432 (591)
T ss_dssp HHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCC-------H----HHHHHHHHHHHHTTSSEEEEETTE
T ss_pred HHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccC-------H----HHHHHHHHHHHhCcCeEEecCCCc
Confidence 89999999999998 699999999999998887 677778543 1 23456799999999997542 33
Q ss_pred ceEEehHHHHHHHHHHH
Q 042822 241 REFSMHDVVHDVAILIA 257 (775)
Q Consensus 241 ~~~~mHdlv~~l~~~~~ 257 (775)
.+|+||+++++++....
T Consensus 433 ~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 433 FRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp EEEECCHHHHHHHHHHT
T ss_pred cEEEEcHHHHHHHHhhh
Confidence 47999999999998773
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=3e-22 Score=222.05 Aligned_cols=210 Identities=19% Similarity=0.215 Sum_probs=166.9
Q ss_pred eecCCccCCCCcccccceeEEEEEcCCCCCCCC-CC-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCC
Q 042822 266 VRNGDVWEWPDKDALKKCYAISWIDSSGGELPE-GL-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLF 343 (775)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~lp~-~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~ 343 (775)
..+..+..+|. ..+..++.|++.+|.+..++. .+ .+++|++|++++|.+. .++...|.++++|++|++++|.++
T Consensus 18 c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~ 93 (477)
T 2id5_A 18 CHRKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS---AVEPGAFNNLFNLRTLGLRSNRLK 93 (477)
T ss_dssp CCSCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCC
T ss_pred eCCCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC---EeChhhhhCCccCCEEECCCCcCC
Confidence 33444555554 456789999999999988864 34 8999999999999877 455555799999999999999999
Q ss_pred CCCcc-cccccCccEEEcCCCCCCC--ccccccCCcccEEEecCCCCccc-chhhhccCCCCEecccCCccccccchHHh
Q 042822 344 SLPSS-IDLLLNLRTLCLDHGTLGD--ITIIGELKNLEILSLIGSDIVEF-PEELGKLTKLRLLDLTNCFHLKVIAANLI 419 (775)
Q Consensus 344 ~lp~~-i~~l~~L~~L~L~~~~l~~--p~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~p~~~l 419 (775)
.+|.. ++++++|++|++++|.+.. +..++++++|++|++++|.++.+ |..+..+++|++|++++| .++.++...+
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l 172 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEAL 172 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHH
T ss_pred ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHh
Confidence 88864 7899999999999999987 56799999999999999999865 457899999999999998 6778887779
Q ss_pred hccccccEEEcCCCcccceecccCCccccccccccccCCCCCCCEEEEEeeC-CCCCCCcc-ccccccceEEEecC
Q 042822 420 ASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVEN-DNALPEGF-FVRELERFKILIGD 493 (775)
Q Consensus 420 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~-~~~~~~~~-~~~~L~~L~l~~~~ 493 (775)
+++++|+.|++++|.+....+ ..+..+++|+.|+++++. ...++... ...+|+.|++..+.
T Consensus 173 ~~l~~L~~L~l~~n~i~~~~~-------------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 235 (477)
T 2id5_A 173 SHLHGLIVLRLRHLNINAIRD-------------YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235 (477)
T ss_dssp TTCTTCCEEEEESCCCCEECT-------------TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC
T ss_pred cccCCCcEEeCCCCcCcEeCh-------------hhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc
Confidence 999999999999998774333 567889999999999764 33333322 22344444444443
No 43
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=1.3e-21 Score=213.75 Aligned_cols=177 Identities=24% Similarity=0.233 Sum_probs=86.8
Q ss_pred ccceeEEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEEE
Q 042822 280 LKKCYAISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTLC 359 (775)
Q Consensus 280 ~~~~~~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 359 (775)
+++++.|++.+|.+..+|.. .++|++|++++|.+. .++. ..++|++|++++|.++.+| .++++++|++|+
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~---~l~~----~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~ 159 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLK---ALSD----LPPLLEYLGVSNNQLEKLP-ELQNSSFLKIID 159 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCS---CCCS----CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEE
T ss_pred cCCCCEEEccCCcCCccccc--cCCCcEEECCCCccC---cccC----CCCCCCEEECcCCCCCCCc-ccCCCCCCCEEE
Confidence 34555555555555555432 245555555555444 2221 1145555555555555555 355555555555
Q ss_pred cCCCCCCC-ccccccCCcccEEEecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccce
Q 042822 360 LDHGTLGD-ITIIGELKNLEILSLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWK 438 (775)
Q Consensus 360 L~~~~l~~-p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~ 438 (775)
+++|.++. |..+ .+|++|++++|.++.+| .++++++|++|++++| .+..+|.. .++|++|++++|.+. .
T Consensus 160 l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~~----~~~L~~L~l~~n~l~-~ 229 (454)
T 1jl5_A 160 VDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN-SLKKLPDL----PLSLESIVAGNNILE-E 229 (454)
T ss_dssp CCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS-CCSSCCCC----CTTCCEEECCSSCCS-S
T ss_pred CCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCC-cCCcCCCC----cCcccEEECcCCcCC-c
Confidence 55555554 2222 35555555555555555 3555555555555555 33334432 135555555555443 1
Q ss_pred ecccCCccccccccccccCCCCCCCEEEEEeeCCCCCCCccccccccceEEEec
Q 042822 439 VEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIG 492 (775)
Q Consensus 439 ~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 492 (775)
+ ..++.+++|+.|++++|....+|.. .++|+.|++..+
T Consensus 230 l--------------p~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N 267 (454)
T 1jl5_A 230 L--------------PELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDN 267 (454)
T ss_dssp C--------------CCCTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSS
T ss_pred c--------------cccCCCCCCCEEECCCCcCCccccc--ccccCEEECCCC
Confidence 1 1244555555555555555544431 234444444433
No 44
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=9.3e-22 Score=226.76 Aligned_cols=145 Identities=19% Similarity=0.279 Sum_probs=124.1
Q ss_pred cCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCc-ccccccCccEEEcCCCCCCC-
Q 042822 290 DSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPS-SIDLLLNLRTLCLDHGTLGD- 367 (775)
Q Consensus 290 ~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~l~~- 367 (775)
+.++..+|..+- +++++|++++|.+. .++...|.++++|++|+|++|.++.+|+ .|+++++|++|+|++|.++.
T Consensus 40 ~~~l~~vP~~lp-~~~~~LdLs~N~i~---~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 40 ELNFYKIPDNLP-FSTKNLDLSFNPLR---HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 115 (635)
T ss_dssp TSCCSSCCSSSC-TTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCCcCccCCCCC-cCCCEEEeeCCCCC---CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC
Confidence 345678887552 47999999999988 7887778999999999999999998865 68999999999999999988
Q ss_pred c-cccccCCcccEEEecCCCCcccch-hhhccCCCCEecccCCccccc--cchHHhhccccccEEEcCCCcccceec
Q 042822 368 I-TIIGELKNLEILSLIGSDIVEFPE-ELGKLTKLRLLDLTNCFHLKV--IAANLIASFTRLEELYMSNCFVEWKVE 440 (775)
Q Consensus 368 p-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~--~p~~~l~~L~~L~~L~l~~~~~~~~~~ 440 (775)
| ..++++++|++|++++|+++.+|. .++++++|++|++++|. +.. +|.. ++.+++|++|++++|.+....+
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCEECG
T ss_pred CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchh-hccchhhhhhcccCcccccccc
Confidence 4 458999999999999999999886 48999999999999984 443 4555 8999999999999998875443
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=9e-22 Score=206.95 Aligned_cols=168 Identities=17% Similarity=0.258 Sum_probs=118.7
Q ss_pred CccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCC-CcccccccCccEEEcCCCCCCC--ccccccCCcccEE
Q 042822 304 QLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSL-PSSIDLLLNLRTLCLDHGTLGD--ITIIGELKNLEIL 380 (775)
Q Consensus 304 ~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~l~~--p~~i~~l~~L~~L 380 (775)
+++.++++++... .+|..+ .++|++|++++|.+..+ |..++++++|++|++++|.++. |..++++++|++|
T Consensus 34 ~l~~l~~~~~~l~---~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 34 HLRVVQCSDLGLK---AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp ETTEEECCSSCCS---SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred cCCEEECCCCCcc---ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence 6788888877665 566654 35788888888888866 4568888888888888888776 5668888888888
Q ss_pred EecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccceecccCCccccccccccccCCCC
Q 042822 381 SLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLP 460 (775)
Q Consensus 381 ~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~ 460 (775)
++++|.++.+|..+. ++|++|++++| .++.+|...++++++|++|++++|.+... ......+..+
T Consensus 108 ~L~~n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~~~~~~~~l- 172 (332)
T 2ft3_A 108 YISKNHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENS-----------GFEPGAFDGL- 172 (332)
T ss_dssp ECCSSCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGG-----------GSCTTSSCSC-
T ss_pred ECCCCcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccC-----------CCCcccccCC-
Confidence 888888888887665 78888888887 56677766678888888888888776410 0112445555
Q ss_pred CCCEEEEEeeCCCCCCCccccccccceEEEecC
Q 042822 461 RLTTLEIAVENDNALPEGFFVRELERFKILIGD 493 (775)
Q Consensus 461 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 493 (775)
+|+.|+++++....+|..+. ++|+.|++..+.
T Consensus 173 ~L~~L~l~~n~l~~l~~~~~-~~L~~L~l~~n~ 204 (332)
T 2ft3_A 173 KLNYLRISEAKLTGIPKDLP-ETLNELHLDHNK 204 (332)
T ss_dssp CCSCCBCCSSBCSSCCSSSC-SSCSCCBCCSSC
T ss_pred ccCEEECcCCCCCccCcccc-CCCCEEECCCCc
Confidence 78888888777777666432 455555554443
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=2.7e-22 Score=208.64 Aligned_cols=174 Identities=16% Similarity=0.219 Sum_probs=123.5
Q ss_pred cceeEEEEEcCCCC---CCCCCC-CCCCccEEEccc-CCCCCccccChhhhhCCCcccEEEecCCCCC-CCCcccccccC
Q 042822 281 KKCYAISWIDSSGG---ELPEGL-ECPQLELLLLSS-KHSSVDVNIPRSFFTGMRELKVVDLTNMQLF-SLPSSIDLLLN 354 (775)
Q Consensus 281 ~~~~~l~l~~~~~~---~lp~~~-~~~~Lr~L~l~~-~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~ 354 (775)
.++++|++.++.+. .+|..+ .+++|++|++++ |.... .+|..+ .++++|++|++++|.++ .+|..++++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~--~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG--PIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES--CCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccc--cCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 46778888777775 466555 777788888874 65543 455553 77778888888887777 67777777788
Q ss_pred ccEEEcCCCCCCC--ccccccCCcccEEEecCCCCc-ccchhhhccC-CCCEecccCCccccccchHHhhccccccEEEc
Q 042822 355 LRTLCLDHGTLGD--ITIIGELKNLEILSLIGSDIV-EFPEELGKLT-KLRLLDLTNCFHLKVIAANLIASFTRLEELYM 430 (775)
Q Consensus 355 L~~L~L~~~~l~~--p~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~-~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l 430 (775)
|++|++++|.+.. |..++++++|++|++++|.++ .+|..++.+. +|++|++++|...+.+|.. ++.++ |++|++
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~L 204 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDL 204 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEEC
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEEC
Confidence 8888888777763 666777778888888777777 7777777776 7788888777544456665 67776 777887
Q ss_pred CCCcccceecccCCccccccccccccCCCCCCCEEEEEeeCC
Q 042822 431 SNCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVEND 472 (775)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~ 472 (775)
++|.+....+ ..+..+++|+.|++++|..
T Consensus 205 s~N~l~~~~~-------------~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 205 SRNMLEGDAS-------------VLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp CSSEEEECCG-------------GGCCTTSCCSEEECCSSEE
T ss_pred cCCcccCcCC-------------HHHhcCCCCCEEECCCCce
Confidence 7777664433 5566777777777766544
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=4.5e-21 Score=201.51 Aligned_cols=154 Identities=18% Similarity=0.270 Sum_probs=88.1
Q ss_pred CccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCc-ccccccCccEEEcCCCCCCC--ccccccCCcccEE
Q 042822 304 QLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPS-SIDLLLNLRTLCLDHGTLGD--ITIIGELKNLEIL 380 (775)
Q Consensus 304 ~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~l~~--p~~i~~l~~L~~L 380 (775)
+++.++++++... .+|..+ .+.|++|++++|.++.+|. .++++++|++|++++|.+.. |..++++++|++|
T Consensus 32 ~l~~l~~~~~~l~---~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 32 HLRVVQCSDLGLE---KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp ETTEEECTTSCCC---SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCeEEEecCCCcc---ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 4555665555544 444432 2456666666666665543 46666666666666666655 4456666666666
Q ss_pred EecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccceecccCCccccccccccccCCCC
Q 042822 381 SLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLP 460 (775)
Q Consensus 381 ~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~ 460 (775)
++++|.++.+|..+. ++|++|++++| .+..++...++++++|++|++++|.+... ......+..++
T Consensus 106 ~Ls~n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~~~~~~~~l~ 171 (330)
T 1xku_A 106 YLSKNQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSS-----------GIENGAFQGMK 171 (330)
T ss_dssp ECCSSCCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGG-----------GBCTTGGGGCT
T ss_pred ECCCCcCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCcc-----------CcChhhccCCC
Confidence 666666666665443 56666666665 34455554466666666666666654310 01124455666
Q ss_pred CCCEEEEEeeCCCCCCC
Q 042822 461 RLTTLEIAVENDNALPE 477 (775)
Q Consensus 461 ~L~~L~l~~~~~~~~~~ 477 (775)
+|+.|+++++....+|.
T Consensus 172 ~L~~L~l~~n~l~~l~~ 188 (330)
T 1xku_A 172 KLSYIRIADTNITTIPQ 188 (330)
T ss_dssp TCCEEECCSSCCCSCCS
T ss_pred CcCEEECCCCccccCCc
Confidence 66666666666555544
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=1.5e-21 Score=204.17 Aligned_cols=230 Identities=22% Similarity=0.272 Sum_probs=159.0
Q ss_pred CCCcccEEEecCCCCCCCCcccccccCccEEEcCCCCCCC-ccccccCCcccEEEecCCCCcccchhhhccCCCCEeccc
Q 042822 328 GMRELKVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGD-ITIIGELKNLEILSLIGSDIVEFPEELGKLTKLRLLDLT 406 (775)
Q Consensus 328 ~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~-p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 406 (775)
....+++|++++|.+..+|..++++++|++|++++|.+.. |..++++++|++|++++|.++.+|..++++++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 4578899999999999999999999999999999999888 778999999999999999999999999999999999999
Q ss_pred CCccccccchHHhhccccccEEEcCCCcccceecccCCccccccccccccCCCCCCCEEEEEeeCCCCCCCccccccccc
Q 042822 407 NCFHLKVIAANLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELER 486 (775)
Q Consensus 407 ~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~ 486 (775)
+|..++.+|.. ++.. .+ ...++.+++|+.|++++|.+..+|..+
T Consensus 159 ~n~~~~~~p~~-~~~~------~~----------------------~~~~~~l~~L~~L~L~~n~l~~lp~~l------- 202 (328)
T 4fcg_A 159 ACPELTELPEP-LAST------DA----------------------SGEHQGLVNLQSLRLEWTGIRSLPASI------- 202 (328)
T ss_dssp EETTCCCCCSC-SEEE------C-----------------------CCCEEESTTCCEEEEEEECCCCCCGGG-------
T ss_pred CCCCccccChh-Hhhc------cc----------------------hhhhccCCCCCEEECcCCCcCcchHhh-------
Confidence 98778888775 4431 10 133456667777777776665544321
Q ss_pred eEEEecCCCCCCccccccccccccccccccccccccceEEEeccCcccccccccccccceEEeecccCCccccccccccc
Q 042822 487 FKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNCKTICSRKLQGIRKVEYLCLDKFQGVKNILFELDTQ 566 (775)
Q Consensus 487 L~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 566 (775)
..+++|+.|+++++.....|..+..+++|++|++++|.....++..
T Consensus 203 ------------------------------~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~---- 248 (328)
T 4fcg_A 203 ------------------------------ANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI---- 248 (328)
T ss_dssp ------------------------------GGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCC----
T ss_pred ------------------------------cCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHH----
Confidence 0144555555555444444445555666666666665544433222
Q ss_pred ccccCcEEEeecCCCccccccCCCcccCCcccccceeecccccccccccccccCcccccCCCeEEeccCCCCCccccchh
Q 042822 567 GFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKTICVDRLSTESFAELRTMKVENCDELSNIFVLST 646 (775)
Q Consensus 567 ~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~ 646 (775)
...+++|+.|++.+|...+.+ +.....+++|++|++++|+.++.+|. .
T Consensus 249 ---------------------------~~~l~~L~~L~L~~n~~~~~~---p~~~~~l~~L~~L~L~~n~~~~~iP~--~ 296 (328)
T 4fcg_A 249 ---------------------------FGGRAPLKRLILKDCSNLLTL---PLDIHRLTQLEKLDLRGCVNLSRLPS--L 296 (328)
T ss_dssp ---------------------------TTCCCCCCEEECTTCTTCCBC---CTTGGGCTTCCEEECTTCTTCCCCCG--G
T ss_pred ---------------------------hcCCCCCCEEECCCCCchhhc---chhhhcCCCCCEEeCCCCCchhhccH--H
Confidence 233455555555555555555 33345677777777777777777766 6
Q ss_pred hcCCCCccEEEEe
Q 042822 647 TKCLPSLQRIAVI 659 (775)
Q Consensus 647 ~~~l~~L~~L~l~ 659 (775)
+..+++|+.+.+.
T Consensus 297 l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 297 IAQLPANCIILVP 309 (328)
T ss_dssp GGGSCTTCEEECC
T ss_pred HhhccCceEEeCC
Confidence 7777777777764
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=2e-21 Score=203.22 Aligned_cols=172 Identities=20% Similarity=0.254 Sum_probs=145.9
Q ss_pred cceeEEEEEcCCCCCCCCCC-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEEE
Q 042822 281 KKCYAISWIDSSGGELPEGL-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTLC 359 (775)
Q Consensus 281 ~~~~~l~l~~~~~~~lp~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 359 (775)
.+++.|++.++.+..+|..+ .+++|++|++++|.+. .+|..+ ..+++|++|++++|.+..+|..++++++|++|+
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~---~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM---ELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC---CCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc---chhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence 56889999999999999876 8999999999999877 677665 889999999999999999999999999999999
Q ss_pred cCCCCCCC--cccccc---------CCcccEEEecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEE
Q 042822 360 LDHGTLGD--ITIIGE---------LKNLEILSLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEEL 428 (775)
Q Consensus 360 L~~~~l~~--p~~i~~---------l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L 428 (775)
+++|.+.. |..++. +++|++|++++|.++.+|..++++++|++|++++| .+..+|.. ++++++|++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N-~l~~l~~~-l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPA-IHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESS-CCCCCCGG-GGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCC-CCCcCchh-hccCCCCCEE
Confidence 99977544 665554 99999999999999999999999999999999998 56678877 8999999999
Q ss_pred EcCCCcccceecccCCccccccccccccCCCCCCCEEEEEeeC
Q 042822 429 YMSNCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVEN 471 (775)
Q Consensus 429 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~ 471 (775)
++++|.+.+.+| ..++.+++|+.|++++|.
T Consensus 235 ~Ls~n~~~~~~p-------------~~~~~l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 235 DLRGCTALRNYP-------------PIFGGRAPLKRLILKDCS 264 (328)
T ss_dssp ECTTCTTCCBCC-------------CCTTCCCCCCEEECTTCT
T ss_pred ECcCCcchhhhH-------------HHhcCCCCCCEEECCCCC
Confidence 999988775555 567777888888877643
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=9e-21 Score=199.30 Aligned_cols=291 Identities=15% Similarity=0.138 Sum_probs=193.6
Q ss_pred ceeEEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCC-CcccccccCccEEEc
Q 042822 282 KCYAISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSL-PSSIDLLLNLRTLCL 360 (775)
Q Consensus 282 ~~~~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L 360 (775)
+++.+.+.++.+..+|..+ .+++++|++++|.+. .++...|.++++|++|++++|.++.+ |..++++++|++|++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDIS---ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCC---ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 5778888888888888765 478999999999876 56665668999999999999999966 778999999999999
Q ss_pred CCCCCCC-ccccccCCcccEEEecCCCCcccchh-hhccCCCCEecccCCcccc-ccchHHhhccccccEEEcCCCcccc
Q 042822 361 DHGTLGD-ITIIGELKNLEILSLIGSDIVEFPEE-LGKLTKLRLLDLTNCFHLK-VIAANLIASFTRLEELYMSNCFVEW 437 (775)
Q Consensus 361 ~~~~l~~-p~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~-~~p~~~l~~L~~L~~L~l~~~~~~~ 437 (775)
++|.++. |..+. ++|++|++++|.++.+|.. +.++++|++|++++|.... .++...++.+ +|++|++++|.+..
T Consensus 110 ~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 110 SKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp CSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 9999888 66555 7999999999999988764 7899999999999984321 1333337777 89999999988762
Q ss_pred eecccCCccccccccccccCCCCCCCEEEEEeeCCCCCCCccccccccceEEEecCCCCCCccccccccccccccccccc
Q 042822 438 KVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLIL 517 (775)
Q Consensus 438 ~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 517 (775)
+| ..+. ++|+.|++++|.+..++.... .
T Consensus 187 -l~-------------~~~~--~~L~~L~l~~n~i~~~~~~~l------------------------------------~ 214 (332)
T 2ft3_A 187 -IP-------------KDLP--ETLNELHLDHNKIQAIELEDL------------------------------------L 214 (332)
T ss_dssp -CC-------------SSSC--SSCSCCBCCSSCCCCCCTTSS------------------------------------T
T ss_pred -cC-------------cccc--CCCCEEECCCCcCCccCHHHh------------------------------------c
Confidence 22 2222 688899999888776653210 0
Q ss_pred cccccceEEEeccCcccccc-cccccccceEEeecccCCcccccccccccccccCcEEEeecCCCccccccCCCcc--cC
Q 042822 518 DHQSLRMLKLKLNCKTICSR-KLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIV--DC 594 (775)
Q Consensus 518 ~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~--~~ 594 (775)
.+++|+.|+++++.....+. ++..+++|++|++++|.. +.++.. ...+++|+.|+++++. ++.+....... ..
T Consensus 215 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~lp~~--l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~ 290 (332)
T 2ft3_A 215 RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAG--LPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFG 290 (332)
T ss_dssp TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC-CBCCTT--GGGCTTCCEEECCSSC-CCBCCTTSSSCSSCC
T ss_pred CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC-eecChh--hhcCccCCEEECCCCC-CCccChhHccccccc
Confidence 14455555555544333332 455666677777766643 334332 2346677777776653 33331111100 11
Q ss_pred CcccccceeecccccccccccccccCcccccCCCeEEeccCC
Q 042822 595 DAFPLLELLSLQNLINLKTICVDRLSTESFAELRTMKVENCD 636 (775)
Q Consensus 595 ~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~ 636 (775)
..+++|+.|++.+++ +..+...+.....+++|+.+++++|.
T Consensus 291 ~~~~~l~~L~l~~N~-~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 291 VKRAYYNGISLFNNP-VPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSSCCBSEEECCSSS-SCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccceEeecCc-ccccccCcccccccchhhhhhccccc
Confidence 235778888888765 33222223445667888888888764
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=1.8e-21 Score=202.31 Aligned_cols=223 Identities=17% Similarity=0.162 Sum_probs=160.0
Q ss_pred CCccEEEcccCCCCCccccChhhhhCCCcccEEEecC-CCCC-CCCcccccccCccEEEcCCCCCCC--ccccccCCccc
Q 042822 303 PQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTN-MQLF-SLPSSIDLLLNLRTLCLDHGTLGD--ITIIGELKNLE 378 (775)
Q Consensus 303 ~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~-~~~~-~lp~~i~~l~~L~~L~L~~~~l~~--p~~i~~l~~L~ 378 (775)
.+++.|++++|.+.....+|.. +.++++|++|++++ |.+. .+|..++++++|++|++++|.+.. |..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 5799999999987632246655 48899999999995 7777 789999999999999999999874 77899999999
Q ss_pred EEEecCCCCc-ccchhhhccCCCCEecccCCccccccchHHhhccc-cccEEEcCCCcccceecccCCcccccccccccc
Q 042822 379 ILSLIGSDIV-EFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFT-RLEELYMSNCFVEWKVEDEGSSSKRSKASLDEL 456 (775)
Q Consensus 379 ~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l 456 (775)
+|++++|.++ .+|..++.+++|++|++++|...+.+|.. +++++ +|++|++++|.+.+..+ ..+
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~~-------------~~~ 194 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIP-------------PTF 194 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECC-------------GGG
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeeccCC-------------hHH
Confidence 9999999888 78999999999999999998655578877 88888 99999999998876555 556
Q ss_pred CCCCCCCEEEEEeeCCCCCCCccccccccceEEEecCCCCCCccccccccccccccccccccccccceEEEeccCccccc
Q 042822 457 MPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNCKTICS 536 (775)
Q Consensus 457 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 536 (775)
..++ |+.|++++|.+...+.. .+..+++|+.|+++++.....+
T Consensus 195 ~~l~-L~~L~Ls~N~l~~~~~~------------------------------------~~~~l~~L~~L~L~~N~l~~~~ 237 (313)
T 1ogq_A 195 ANLN-LAFVDLSRNMLEGDASV------------------------------------LFGSDKNTQKIHLAKNSLAFDL 237 (313)
T ss_dssp GGCC-CSEEECCSSEEEECCGG------------------------------------GCCTTSCCSEEECCSSEECCBG
T ss_pred hCCc-ccEEECcCCcccCcCCH------------------------------------HHhcCCCCCEEECCCCceeeec
Confidence 6665 88888887654322110 0111556666666655444334
Q ss_pred ccccccccceEEeecccCCcccccccccccccccCcEEEeecC
Q 042822 537 RKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNN 579 (775)
Q Consensus 537 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 579 (775)
+.+..+++|++|++++|.....++.. ...+++|+.|+++++
T Consensus 238 ~~~~~l~~L~~L~Ls~N~l~~~~p~~--l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 238 GKVGLSKNLNGLDLRNNRIYGTLPQG--LTQLKFLHSLNVSFN 278 (313)
T ss_dssp GGCCCCTTCCEEECCSSCCEECCCGG--GGGCTTCCEEECCSS
T ss_pred CcccccCCCCEEECcCCcccCcCChH--HhcCcCCCEEECcCC
Confidence 44455566666666655433233222 223555555555554
No 52
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=4.2e-20 Score=194.06 Aligned_cols=291 Identities=15% Similarity=0.158 Sum_probs=200.4
Q ss_pred ceeEEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCC-CcccccccCccEEEc
Q 042822 282 KCYAISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSL-PSSIDLLLNLRTLCL 360 (775)
Q Consensus 282 ~~~~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L 360 (775)
+++.+++.++.+..+|..+ .+++++|++++|.+. .++...|.++++|++|++++|.++.+ |..++++++|++|++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKIT---EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCC---CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCcCC---EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 5677888778888888755 368999999999877 56666678999999999999999976 788999999999999
Q ss_pred CCCCCCC-ccccccCCcccEEEecCCCCcccch-hhhccCCCCEecccCCcccc-ccchHHhhccccccEEEcCCCcccc
Q 042822 361 DHGTLGD-ITIIGELKNLEILSLIGSDIVEFPE-ELGKLTKLRLLDLTNCFHLK-VIAANLIASFTRLEELYMSNCFVEW 437 (775)
Q Consensus 361 ~~~~l~~-p~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~-~~p~~~l~~L~~L~~L~l~~~~~~~ 437 (775)
++|.++. |..+. ++|++|++++|.++.+|. .+.++++|++|++++|.... .+....++++++|++|++++|.+..
T Consensus 108 s~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 108 SKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp CSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 9999887 65554 789999999999987765 57899999999999984321 1333338899999999999988762
Q ss_pred eecccCCccccccccccccCCCCCCCEEEEEeeCCCCCCCccccccccceEEEecCCCCCCccccccccccccccccccc
Q 042822 438 KVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLIL 517 (775)
Q Consensus 438 ~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 517 (775)
++ ..+ .++|+.|++++|.+..++... +.
T Consensus 186 -l~-------------~~~--~~~L~~L~l~~n~l~~~~~~~------------------------------------~~ 213 (330)
T 1xku_A 186 -IP-------------QGL--PPSLTELHLDGNKITKVDAAS------------------------------------LK 213 (330)
T ss_dssp -CC-------------SSC--CTTCSEEECTTSCCCEECTGG------------------------------------GT
T ss_pred -CC-------------ccc--cccCCEEECCCCcCCccCHHH------------------------------------hc
Confidence 22 122 268899998887765443210 11
Q ss_pred cccccceEEEeccCccccc-ccccccccceEEeecccCCcccccccccccccccCcEEEeecCCCccccccCCCcc--cC
Q 042822 518 DHQSLRMLKLKLNCKTICS-RKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIV--DC 594 (775)
Q Consensus 518 ~~~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~--~~ 594 (775)
.+++|+.|+++++.....+ .++..+++|++|++++|.. +.++.. ...+++|+.|+++++. ++.+....... ..
T Consensus 214 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~lp~~--l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~ 289 (330)
T 1xku_A 214 GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGG--LADHKYIQVVYLHNNN-ISAIGSNDFCPPGYN 289 (330)
T ss_dssp TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC-SSCCTT--TTTCSSCCEEECCSSC-CCCCCTTSSSCSSCC
T ss_pred CCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC-ccCChh--hccCCCcCEEECCCCc-CCccChhhcCCcccc
Confidence 1566777777765544443 3556777888888877743 344333 3447778888887764 44332111100 11
Q ss_pred CcccccceeecccccccccccccccCcccccCCCeEEeccC
Q 042822 595 DAFPLLELLSLQNLINLKTICVDRLSTESFAELRTMKVENC 635 (775)
Q Consensus 595 ~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C 635 (775)
..++.|+.|++.+.+ +..+...+.....+++|+.++++++
T Consensus 290 ~~~~~l~~l~l~~N~-~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 290 TKKASYSGVSLFSNP-VQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TTSCCCSEEECCSSS-SCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cccccccceEeecCc-ccccccCccccccccceeEEEeccc
Confidence 235778888888765 3333223344566788888888775
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=2e-20 Score=198.52 Aligned_cols=265 Identities=20% Similarity=0.180 Sum_probs=188.4
Q ss_pred EEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCC-CcccccccCccEEEcCCCC
Q 042822 286 ISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSL-PSSIDLLLNLRTLCLDHGT 364 (775)
Q Consensus 286 l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~ 364 (775)
.+..++.+..+|..+. ++|++|++++|.+. .++...|.++++|++|++++|.++.+ |..++++++|++|++++|.
T Consensus 36 c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT-EAVKSLDLSNNRIT---YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EECCSTTCSSCCTTCC-TTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred eeCCCCCccccccccc-ccCcEEECCCCcCc---ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 5666777888887553 58999999999877 57766678999999999999999866 5678999999999999999
Q ss_pred CCC-ccc-cccCCcccEEEecCCCCcccch--hhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccceec
Q 042822 365 LGD-ITI-IGELKNLEILSLIGSDIVEFPE--ELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKVE 440 (775)
Q Consensus 365 l~~-p~~-i~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~ 440 (775)
++. ++. ++++++|++|++++|.++.+|. .+.++++|++|++++|..++.++...++++++|++|++++|.+....+
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence 888 544 8899999999999999998887 688999999999999866777766558899999999999988774444
Q ss_pred ccCCccccccccccccCCCCCCCEEEEEeeCCCCCCCcc--ccccccceEEEecCCCCCCcccccccccccccccccccc
Q 042822 441 DEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPEGF--FVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILD 518 (775)
Q Consensus 441 ~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 518 (775)
..++.+++|++|++++|....++... .+++|+.|++..+.....+..... . ...
T Consensus 192 -------------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~--~---------~~~ 247 (353)
T 2z80_A 192 -------------KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS--T---------GET 247 (353)
T ss_dssp -------------TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----------------C
T ss_pred -------------HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc--c---------ccc
Confidence 67788889999999988877666543 357777777776664443211100 0 001
Q ss_pred ccccceEEEeccCc-----ccccccccccccceEEeecccCCcccccccccccccccCcEEEeecCC
Q 042822 519 HQSLRMLKLKLNCK-----TICSRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNP 580 (775)
Q Consensus 519 ~~~L~~L~l~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 580 (775)
...++.+++..... ...|.++..+++|++|++++|.. +.++... ...+++|+.|++++++
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l-~~i~~~~-~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL-KSVPDGI-FDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC-CCCCTTT-TTTCTTCCEEECCSSC
T ss_pred cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCC-CccCHHH-HhcCCCCCEEEeeCCC
Confidence 34455555544221 22445555666777777766643 2333221 2345666666666654
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=3.3e-19 Score=200.62 Aligned_cols=157 Identities=21% Similarity=0.255 Sum_probs=110.1
Q ss_pred ceeEEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEEEcC
Q 042822 282 KCYAISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTLCLD 361 (775)
Q Consensus 282 ~~~~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~ 361 (775)
.++.|++.++.+..+|..+. ++|++|++++|.+. .+|. .+++|++|++++|.++.+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~---~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT---SLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCS---CCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCC---CCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECc
Confidence 47788888888888887654 78888888888766 5664 46788888888888887776 66778888888
Q ss_pred CCCCCCccccccCCcccEEEecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccceecc
Q 042822 362 HGTLGDITIIGELKNLEILSLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKVED 441 (775)
Q Consensus 362 ~~~l~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~ 441 (775)
+|.++..+. .+.+|++|++++|+++.+|.. +++|++|++++| .++.+|.. +.+|+.|++++|.+.. +
T Consensus 110 ~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~----~~~L~~L~L~~N~l~~-l-- 176 (622)
T 3g06_A 110 SNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL----PSELCKLWAYNNQLTS-L-- 176 (622)
T ss_dssp SCCCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCCSC-C--
T ss_pred CCcCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCCc----cCCCCEEECCCCCCCC-C--
Confidence 888777332 567788888888888777763 477888888877 55566542 4567777777776541 0
Q ss_pred cCCccccccccccccCCCCCCCEEEEEeeCCCCCC
Q 042822 442 EGSSSKRSKASLDELMPLPRLTTLEIAVENDNALP 476 (775)
Q Consensus 442 ~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~ 476 (775)
. ..+++|+.|++++|.+..+|
T Consensus 177 ------------~--~~~~~L~~L~Ls~N~l~~l~ 197 (622)
T 3g06_A 177 ------------P--MLPSGLQELSVSDNQLASLP 197 (622)
T ss_dssp ------------C--CCCTTCCEEECCSSCCSCCC
T ss_pred ------------c--ccCCCCcEEECCCCCCCCCC
Confidence 1 33456666666666555443
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=4.4e-19 Score=199.58 Aligned_cols=255 Identities=18% Similarity=0.117 Sum_probs=151.5
Q ss_pred CccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEEEcCCCCCCCccccccCCcccEEEec
Q 042822 304 QLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGDITIIGELKNLEILSLI 383 (775)
Q Consensus 304 ~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~p~~i~~l~~L~~L~l~ 383 (775)
++++|++++|.+. .+|..++ ++|++|++++|.++.+|. .+++|++|++++|.++..+. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~---~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT---TLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS---CCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC---ccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECc
Confidence 4677777777665 5665442 677777777777777766 45677777777777766322 56777777777
Q ss_pred CCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccceecccCCccccccccccccCCCCCCC
Q 042822 384 GSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLPRLT 463 (775)
Q Consensus 384 ~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~ 463 (775)
+|.++.+|. .+++|++|++++| .+..+|.. +++|++|++++|.+.. ++ ..+.+|+
T Consensus 110 ~N~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~----l~~L~~L~Ls~N~l~~-l~----------------~~~~~L~ 164 (622)
T 3g06_A 110 SNPLTHLPA---LPSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLAS-LP----------------ALPSELC 164 (622)
T ss_dssp SCCCCCCCC---CCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCCSC-CC----------------CCCTTCC
T ss_pred CCcCCCCCC---CCCCcCEEECCCC-CCCcCCCC----CCCCCEEECcCCcCCC-cC----------------CccCCCC
Confidence 777777766 5667777777776 45666653 3677777777776541 11 1235667
Q ss_pred EEEEEeeCCCCCCCccccccccceEEEecCCCCCCccccccccccccccccccccccccceEEEeccCcccccccccccc
Q 042822 464 TLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNCKTICSRKLQGIR 543 (775)
Q Consensus 464 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~ 543 (775)
.|++++|.+..+|. . +++|+.|+++++.....|. .++
T Consensus 165 ~L~L~~N~l~~l~~--~--------------------------------------~~~L~~L~Ls~N~l~~l~~---~~~ 201 (622)
T 3g06_A 165 KLWAYNNQLTSLPM--L--------------------------------------PSGLQELSVSDNQLASLPT---LPS 201 (622)
T ss_dssp EEECCSSCCSCCCC--C--------------------------------------CTTCCEEECCSSCCSCCCC---CCT
T ss_pred EEECCCCCCCCCcc--c--------------------------------------CCCCcEEECCCCCCCCCCC---ccc
Confidence 77777666655542 1 3444444444443333332 235
Q ss_pred cceEEeecccCCcccccccccccccccCcEEEeecCCCccccccCCCcccCCcccccceeecccccccccccccccCccc
Q 042822 544 KVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKTICVDRLSTES 623 (775)
Q Consensus 544 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~ 623 (775)
+|+.|++++|.. +.++. .+++|+.|++++|. ++.+ + ..+++|+.|+++++ .++.++ . .
T Consensus 202 ~L~~L~L~~N~l-~~l~~-----~~~~L~~L~Ls~N~-L~~l-------p-~~l~~L~~L~Ls~N-~L~~lp---~---~ 259 (622)
T 3g06_A 202 ELYKLWAYNNRL-TSLPA-----LPSGLKELIVSGNR-LTSL-------P-VLPSELKELMVSGN-RLTSLP---M---L 259 (622)
T ss_dssp TCCEEECCSSCC-SSCCC-----CCTTCCEEECCSSC-CSCC-------C-CCCTTCCEEECCSS-CCSCCC---C---C
T ss_pred hhhEEECcCCcc-cccCC-----CCCCCCEEEccCCc-cCcC-------C-CCCCcCcEEECCCC-CCCcCC---c---c
Confidence 566666655532 22221 23566666666552 3322 1 34566666666664 444442 1 4
Q ss_pred ccCCCeEEeccCCCCCccccchhhcCCCCccEEEEeccc
Q 042822 624 FAELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCN 662 (775)
Q Consensus 624 ~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~ 662 (775)
+++|+.|++++| +++.+|. .+..+++|+.|++++++
T Consensus 260 ~~~L~~L~Ls~N-~L~~lp~--~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 260 PSGLLSLSVYRN-QLTRLPE--SLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CTTCCEEECCSS-CCCSCCG--GGGGSCTTCEEECCSCC
T ss_pred cccCcEEeCCCC-CCCcCCH--HHhhccccCEEEecCCC
Confidence 566777777765 5666654 46667777777776665
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.82 E-value=6e-20 Score=190.70 Aligned_cols=173 Identities=21% Similarity=0.203 Sum_probs=120.6
Q ss_pred EEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCC---CcccccccCccEEEcC
Q 042822 285 AISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSL---PSSIDLLLNLRTLCLD 361 (775)
Q Consensus 285 ~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l---p~~i~~l~~L~~L~L~ 361 (775)
.++..++.+..+|..+ .++|++|++++|.+. .+|..+|.++++|++|++++|.++.+ |..+..+++|++|+++
T Consensus 11 ~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~---~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI-PSSATRLELESNKLQ---SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp EEECCSSCCSSCCSCC-CTTCCEEECCSSCCC---CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred EEEcCCCCcccCCCCC-CCCCCEEECCCCccC---ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 4555556666776644 257788888877766 57776677788888888888877744 5566677788888888
Q ss_pred CCCCCC-ccccccCCcccEEEecCCCCcccch--hhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccc-
Q 042822 362 HGTLGD-ITIIGELKNLEILSLIGSDIVEFPE--ELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEW- 437 (775)
Q Consensus 362 ~~~l~~-p~~i~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~- 437 (775)
+|.+.. |..+..+++|++|++++|.++.+|. .+..+++|++|++++|. +...+...++++++|++|++++|.+..
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCccccc
Confidence 887776 6667778888888888887776654 57777888888888774 444443347777888888888777653
Q ss_pred eecccCCccccccccccccCCCCCCCEEEEEeeCCCCC
Q 042822 438 KVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNAL 475 (775)
Q Consensus 438 ~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~ 475 (775)
..+ ..+..+++|+.|++++|.+..+
T Consensus 166 ~~~-------------~~~~~l~~L~~L~Ls~n~l~~~ 190 (306)
T 2z66_A 166 FLP-------------DIFTELRNLTFLDLSQCQLEQL 190 (306)
T ss_dssp EEC-------------SCCTTCTTCCEEECTTSCCCEE
T ss_pred cch-------------hHHhhCcCCCEEECCCCCcCCc
Confidence 222 5566777777777776655443
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.82 E-value=8.5e-20 Score=187.41 Aligned_cols=173 Identities=19% Similarity=0.229 Sum_probs=104.0
Q ss_pred eEEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCC-CcccccccCccEEEcCC
Q 042822 284 YAISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSL-PSSIDLLLNLRTLCLDH 362 (775)
Q Consensus 284 ~~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~ 362 (775)
+.++..++.+..+|..+ .++|++|++++|.+. .++...|..+++|++|++++|.++.+ |..++.+++|++|++++
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~---~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRIS---HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCC---ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 34445555555555433 356666666666655 45544456666677777766666644 55666666677777766
Q ss_pred CC-CCC--ccccccCCcccEEEecCCCCccc-chhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccce
Q 042822 363 GT-LGD--ITIIGELKNLEILSLIGSDIVEF-PEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWK 438 (775)
Q Consensus 363 ~~-l~~--p~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~ 438 (775)
|. +.. +..++.+++|++|++++|.++.+ |..+.++++|++|++++| .++.++...++++++|++|++++|.+...
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCccccc
Confidence 65 554 34566666677777766666654 344666666777776666 44555554466666677777666655422
Q ss_pred ecccCCccccccccccccCCCCCCCEEEEEeeCCCC
Q 042822 439 VEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNA 474 (775)
Q Consensus 439 ~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~ 474 (775)
.+ ..+..+++|+.|++++|.+..
T Consensus 169 ~~-------------~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 169 PE-------------RAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CT-------------TTTTTCTTCCEEECCSSCCCE
T ss_pred CH-------------HHhcCccccCEEECCCCcccc
Confidence 21 335566666666666665443
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=4.3e-19 Score=194.11 Aligned_cols=241 Identities=20% Similarity=0.274 Sum_probs=178.0
Q ss_pred eeEEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCC-cccccccCccEEEcC
Q 042822 283 CYAISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLP-SSIDLLLNLRTLCLD 361 (775)
Q Consensus 283 ~~~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~L~ 361 (775)
.+.+...+..+..+|..+. ++++.|++++|.+. .++...|.++++|++|++++|.+..++ ..+.++++|++|+++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~---~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQ---IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCC---EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCC---eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3466666677788887653 67899999998877 566666789999999999999998665 678889999999999
Q ss_pred CCCCCC-c-cccccCCcccEEEecCCCCcccch-hhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccce
Q 042822 362 HGTLGD-I-TIIGELKNLEILSLIGSDIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWK 438 (775)
Q Consensus 362 ~~~l~~-p-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~ 438 (775)
+|.++. + ..+..+++|++|++++|.++.+|. .+.++++|++|++++|..++.++...+.++++|++|++++|.+.
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-- 198 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-- 198 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS--
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc--
Confidence 999888 4 358889999999999999887776 67889999999999887888888877889999999999988765
Q ss_pred ecccCCccccccccccccCCCCCCCEEEEEeeCCCCCCCccccccccceEEEecCCCCCCcccccccccccccccccccc
Q 042822 439 VEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILD 518 (775)
Q Consensus 439 ~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 518 (775)
.+..+..+++|+.|++++|.+..++... +..
T Consensus 199 -------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~------------------------------------~~~ 229 (440)
T 3zyj_A 199 -------------EIPNLTPLIKLDELDLSGNHLSAIRPGS------------------------------------FQG 229 (440)
T ss_dssp -------------SCCCCTTCSSCCEEECTTSCCCEECTTT------------------------------------TTT
T ss_pred -------------cccccCCCcccCEEECCCCccCccChhh------------------------------------hcc
Confidence 1234778888899888887766543210 111
Q ss_pred ccccceEEEeccCcccc-cccccccccceEEeecccCCcccccccccccccccCcEEEeecCC
Q 042822 519 HQSLRMLKLKLNCKTIC-SRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNP 580 (775)
Q Consensus 519 ~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 580 (775)
+++|+.|++.++..... +..+..+++|+.|++++|.. +.++.. ....+++|+.|++++++
T Consensus 230 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~-~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 230 LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL-TLLPHD-LFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC-CCCCTT-TTSSCTTCCEEECCSSC
T ss_pred CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC-CccChh-HhccccCCCEEEcCCCC
Confidence 56666666666544433 33455677788888877743 333322 12446777777777765
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=4.5e-19 Score=194.66 Aligned_cols=241 Identities=20% Similarity=0.227 Sum_probs=178.7
Q ss_pred eeEEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCC-cccccccCccEEEcC
Q 042822 283 CYAISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLP-SSIDLLLNLRTLCLD 361 (775)
Q Consensus 283 ~~~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~L~ 361 (775)
.+.+...+.++..+|..+. +++++|++++|.+. .++...|.++++|++|++++|.+..++ ..++++++|++|+++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~---~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQ---MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC-TTCSEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcCccCCCCC-CCccEEECcCCcCc---eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3456666677778886553 68999999999877 565566789999999999999998664 678899999999999
Q ss_pred CCCCCC-c-cccccCCcccEEEecCCCCcccch-hhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccce
Q 042822 362 HGTLGD-I-TIIGELKNLEILSLIGSDIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWK 438 (775)
Q Consensus 362 ~~~l~~-p-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~ 438 (775)
+|.++. + ..++.+++|++|++++|.++.+|. .+.++++|++|++++|..++.++...++++++|++|++++|.+..
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 210 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD- 210 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-
Confidence 999887 4 448889999999999999998876 578899999999999888888888778899999999999987651
Q ss_pred ecccCCccccccccccccCCCCCCCEEEEEeeCCCCCCCccccccccceEEEecCCCCCCcccccccccccccccccccc
Q 042822 439 VEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILD 518 (775)
Q Consensus 439 ~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 518 (775)
+..+..+++|+.|++++|.+..++... +..
T Consensus 211 --------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~------------------------------------~~~ 240 (452)
T 3zyi_A 211 --------------MPNLTPLVGLEELEMSGNHFPEIRPGS------------------------------------FHG 240 (452)
T ss_dssp --------------CCCCTTCTTCCEEECTTSCCSEECGGG------------------------------------GTT
T ss_pred --------------cccccccccccEEECcCCcCcccCccc------------------------------------ccC
Confidence 234778888899988887766543210 112
Q ss_pred ccccceEEEeccCcccc-cccccccccceEEeecccCCcccccccccccccccCcEEEeecCC
Q 042822 519 HQSLRMLKLKLNCKTIC-SRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNP 580 (775)
Q Consensus 519 ~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 580 (775)
+++|+.|+++++..... +..+..+++|+.|++++|.. +.++.. ....+++|+.|++++++
T Consensus 241 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~-~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 241 LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL-SSLPHD-LFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-SCCCTT-SSTTCTTCCEEECCSSC
T ss_pred ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC-CccChH-HhccccCCCEEEccCCC
Confidence 56666677666544333 34455677777777777743 333322 12446777777777764
No 60
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.80 E-value=8.9e-22 Score=217.42 Aligned_cols=153 Identities=18% Similarity=0.124 Sum_probs=77.6
Q ss_pred cceeEEEEEcCCCCCCCCC--C-CCCCccEEEcccCCCCCcc--ccChhhhhCCCcccEEEecCCCCCC-CCccc-cccc
Q 042822 281 KKCYAISWIDSSGGELPEG--L-ECPQLELLLLSSKHSSVDV--NIPRSFFTGMRELKVVDLTNMQLFS-LPSSI-DLLL 353 (775)
Q Consensus 281 ~~~~~l~l~~~~~~~lp~~--~-~~~~Lr~L~l~~~~~~~~~--~l~~~~~~~l~~L~~L~l~~~~~~~-lp~~i-~~l~ 353 (775)
.++++|++.++.+...+.. + .+++|++|++++|.+...+ .++ ..+..+++|++|++++|.+.. .+..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHH-HHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 3566666666655433211 1 4566666666666544210 112 233556666666666666542 11112 2233
Q ss_pred ----CccEEEcCCCCCCC------ccccccCCcccEEEecCCCCcc-cchhhh-----ccCCCCEecccCCccccc----
Q 042822 354 ----NLRTLCLDHGTLGD------ITIIGELKNLEILSLIGSDIVE-FPEELG-----KLTKLRLLDLTNCFHLKV---- 413 (775)
Q Consensus 354 ----~L~~L~L~~~~l~~------p~~i~~l~~L~~L~l~~~~l~~-lp~~i~-----~l~~L~~L~l~~~~~l~~---- 413 (775)
+|++|++++|.+.. +..+.++++|++|++++|.++. .+..+. ..++|++|++++|. ++.
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~ 160 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCE 160 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHH
Confidence 46666666666552 3445666666666666665542 122222 23456666666663 322
Q ss_pred -cchHHhhccccccEEEcCCCccc
Q 042822 414 -IAANLIASFTRLEELYMSNCFVE 436 (775)
Q Consensus 414 -~p~~~l~~L~~L~~L~l~~~~~~ 436 (775)
++.. ++.+++|++|++++|.+.
T Consensus 161 ~l~~~-l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 161 PLASV-LRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HHHHH-HHHCTTCCEEECCSSBCH
T ss_pred HHHHH-HhhCCCCCEEECcCCCcc
Confidence 2222 455566666666666543
No 61
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.80 E-value=4.3e-20 Score=210.80 Aligned_cols=369 Identities=13% Similarity=0.120 Sum_probs=195.8
Q ss_pred CCCCccEEEcccCCCCCccccChhhhhCCCc-ccEEEecCCC-CC--CCCcccccccCccEEEcCCCCCCCc------cc
Q 042822 301 ECPQLELLLLSSKHSSVDVNIPRSFFTGMRE-LKVVDLTNMQ-LF--SLPSSIDLLLNLRTLCLDHGTLGDI------TI 370 (775)
Q Consensus 301 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~-L~~L~l~~~~-~~--~lp~~i~~l~~L~~L~L~~~~l~~p------~~ 370 (775)
.+++|++|++++|.... ..+..+...++. |++|++++|. +. .++..+..+++|++|++++|.+.+. ..
T Consensus 110 ~~~~L~~L~L~~~~i~~--~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~ 187 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSD--LDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187 (592)
T ss_dssp HCTTCCEEEEESCBCCH--HHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH
T ss_pred hCCCCCeEEeeccEecH--HHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH
Confidence 47888999998885542 223333222344 8889988876 22 2333345788899999988876541 23
Q ss_pred cccCCcccEEEecCCCCc-----ccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccceecccCCc
Q 042822 371 IGELKNLEILSLIGSDIV-----EFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKVEDEGSS 445 (775)
Q Consensus 371 i~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~ 445 (775)
+..+++|++|++++|.++ .++..+.++++|++|++++| .+..+|.. ++++++|++|+++.+.....
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~-~~~~~~L~~L~l~~~~~~~~------- 258 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGF-FKAAANLEEFCGGSLNEDIG------- 258 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHH-HHHCTTCCEEEECBCCCCTT-------
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHH-HhhhhHHHhhcccccccccc-------
Confidence 456788889999888765 45556678888999999887 45567755 88888899888875322111
Q ss_pred cccccccccccCCCCCCCEEEEEeeCCCCCCCcc-ccccccceEEEecCCCC---------CCccc---ccccccccccc
Q 042822 446 SKRSKASLDELMPLPRLTTLEIAVENDNALPEGF-FVRELERFKILIGDRSF---------EPPVI---LSKDWFRISRS 512 (775)
Q Consensus 446 ~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~---------l~~l~---~~~~~~~~~~~ 512 (775)
.......+..+++|+.|.++......+|... .+++|+.|++..+.... ++.+. .. ........
T Consensus 259 ---~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l 334 (592)
T 3ogk_B 259 ---MPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGL 334 (592)
T ss_dssp ---CTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHH
T ss_pred ---hHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHH
Confidence 1123355666677777777655444455443 45667777665443110 00000 00 00000000
Q ss_pred ccccccccccceEEEec----------cCccc---ccccccccccceEEeecccCCcccccccccccccccCcEEEeec-
Q 042822 513 HFLILDHQSLRMLKLKL----------NCKTI---CSRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQN- 578 (775)
Q Consensus 513 ~~~~~~~~~L~~L~l~~----------~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~- 578 (775)
......+++|+.|++.. +.... .+.....+++|++|++. |..+++.........+++|+.|++.+
T Consensus 335 ~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~~ 413 (592)
T 3ogk_B 335 EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLL 413 (592)
T ss_dssp HHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHHHHCCSCCEEEEEEC
T ss_pred HHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee-cCCccHHHHHHHHhhCCCCcEEEEeec
Confidence 00011245555555552 11111 01111235555555552 22232222211122355666666653
Q ss_pred --CCCccccccCC-CcccCCcccccceeecccccc-cccccccccCcccccCCCeEEeccCCCCCccccchhhcCCCCcc
Q 042822 579 --NPDLLFIVDSR-EIVDCDAFPLLELLSLQNLIN-LKTICVDRLSTESFAELRTMKVENCDELSNIFVLSTTKCLPSLQ 654 (775)
Q Consensus 579 --~~~l~~i~~~~-~~~~~~~~p~L~~L~l~~~~~-l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~ 654 (775)
|..++...... .......+++|+.|++..|.+ +..-.. ..-...+++|++|++++|. ++.......+..+++|+
T Consensus 414 ~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~-~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~ 491 (592)
T 3ogk_B 414 DREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL-SYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQ 491 (592)
T ss_dssp SCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH-HHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCC
T ss_pred CCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH-HHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccC
Confidence 22332210000 000123367777777766553 111100 0011236778888888764 54422223557788888
Q ss_pred EEEEecccchHHHhhccCCCCcccCCCCCCccccccccCeEecCCCC
Q 042822 655 RIAVIKCNKMKEIFAIGGEEPDVADNSNANEKIEFAQIRYLSLGNLP 701 (775)
Q Consensus 655 ~L~l~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 701 (775)
+|+|++|+ ++.... +.....+++|++|+|++|.
T Consensus 492 ~L~l~~n~-l~~~~~-------------~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 492 KLEMRGCC-FSERAI-------------AAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp EEEEESCC-CBHHHH-------------HHHHHHCSSCCEEEEESCB
T ss_pred eeeccCCC-CcHHHH-------------HHHHHhcCccCeeECcCCc
Confidence 88888887 332100 1122357889999999986
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=5.8e-19 Score=183.24 Aligned_cols=196 Identities=21% Similarity=0.224 Sum_probs=160.2
Q ss_pred eecCCccCCCCcccccceeEEEEEcCCCCCCCCCC--CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCC
Q 042822 266 VRNGDVWEWPDKDALKKCYAISWIDSSGGELPEGL--ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLF 343 (775)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~lp~~~--~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~ 343 (775)
..+.....+|. ...+++++|++.+|.+..+|... .+++|++|++++|.+...+..+..+ ..+++|++|++++|.+.
T Consensus 14 c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~ 91 (306)
T 2z66_A 14 CNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLSFNGVI 91 (306)
T ss_dssp CCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECCSCSEE
T ss_pred cCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECCCCccc
Confidence 33444555554 45578999999999999999753 8999999999999876432335554 67999999999999999
Q ss_pred CCCcccccccCccEEEcCCCCCCC-c--cccccCCcccEEEecCCCCc-ccchhhhccCCCCEecccCCcccc-ccchHH
Q 042822 344 SLPSSIDLLLNLRTLCLDHGTLGD-I--TIIGELKNLEILSLIGSDIV-EFPEELGKLTKLRLLDLTNCFHLK-VIAANL 418 (775)
Q Consensus 344 ~lp~~i~~l~~L~~L~L~~~~l~~-p--~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~-~~p~~~ 418 (775)
.+|..+..+++|++|++++|.+.. + ..+.++++|++|++++|.+. ..|..+..+++|++|++++|...+ .+|..
T Consensus 92 ~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~- 170 (306)
T 2z66_A 92 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI- 170 (306)
T ss_dssp EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC-
T ss_pred cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH-
Confidence 999999999999999999999887 3 46899999999999999988 455678999999999999985444 35665
Q ss_pred hhccccccEEEcCCCcccceecccCCccccccccccccCCCCCCCEEEEEeeCCCCCCC
Q 042822 419 IASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPE 477 (775)
Q Consensus 419 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~ 477 (775)
++.+++|++|++++|.+....+ ..+..+++|+.|++++|.+..++.
T Consensus 171 ~~~l~~L~~L~Ls~n~l~~~~~-------------~~~~~l~~L~~L~L~~N~l~~~~~ 216 (306)
T 2z66_A 171 FTELRNLTFLDLSQCQLEQLSP-------------TAFNSLSSLQVLNMSHNNFFSLDT 216 (306)
T ss_dssp CTTCTTCCEEECTTSCCCEECT-------------TTTTTCTTCCEEECTTSCCSBCCS
T ss_pred HhhCcCCCEEECCCCCcCCcCH-------------HHhcCCCCCCEEECCCCccCccCh
Confidence 8999999999999998874433 667888999999998887665543
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=3.6e-19 Score=188.77 Aligned_cols=263 Identities=15% Similarity=0.116 Sum_probs=200.4
Q ss_pred eecCCccCCCCcccccceeEEEEEcCCCCCCCC-CC-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCC
Q 042822 266 VRNGDVWEWPDKDALKKCYAISWIDSSGGELPE-GL-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLF 343 (775)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~lp~-~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~ 343 (775)
..+.....+|. ...+++++|++.+|.+..++. .+ .+++|++|++++|.+. .++...|.++++|++|++++|.++
T Consensus 38 ~~~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 38 GSSGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN---TIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp CCSTTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC---ccCHhhcCCCCCCCEEECCCCcCC
Confidence 33445555554 445689999999999998887 33 8999999999999877 566666799999999999999999
Q ss_pred CCCcc-cccccCccEEEcCCCCCCC-cc--ccccCCcccEEEecCC-CCccc-chhhhccCCCCEecccCCccccccchH
Q 042822 344 SLPSS-IDLLLNLRTLCLDHGTLGD-IT--IIGELKNLEILSLIGS-DIVEF-PEELGKLTKLRLLDLTNCFHLKVIAAN 417 (775)
Q Consensus 344 ~lp~~-i~~l~~L~~L~L~~~~l~~-p~--~i~~l~~L~~L~l~~~-~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~p~~ 417 (775)
.+|.. ++++++|++|++++|.++. |. .++++++|++|++++| .+..+ |..++++++|++|++++|...+..|..
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 193 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS 193 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHH
Confidence 99876 8999999999999999988 44 6899999999999999 57766 457899999999999998544334555
Q ss_pred HhhccccccEEEcCCCcccceecccCCccccccccccccCCCCCCCEEEEEeeCCCCCCCcc-----ccccccceEEEec
Q 042822 418 LIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPEGF-----FVRELERFKILIG 492 (775)
Q Consensus 418 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~L~~L~l~~~ 492 (775)
++++++|++|++++|.+.. ++ ...+..+++|+.|++++|....++... ....++.+.+...
T Consensus 194 -l~~l~~L~~L~l~~n~l~~-~~------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~ 259 (353)
T 2z80_A 194 -LKSIQNVSHLILHMKQHIL-LL------------EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259 (353)
T ss_dssp -TTTCSEEEEEEEECSCSTT-HH------------HHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC
T ss_pred -HhccccCCeecCCCCcccc-ch------------hhhhhhcccccEEECCCCccccccccccccccccchhhccccccc
Confidence 9999999999999998642 11 123445889999999999877654321 2344555555533
Q ss_pred CCCCCCccccccccccccccccccccccccceEEEeccCcccccccc-cccccceEEeecccCCc
Q 042822 493 DRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNCKTICSRKL-QGIRKVEYLCLDKFQGV 556 (775)
Q Consensus 493 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~ 556 (775)
..... .....+..+..+++|+.|+++++.....|.++ ..+++|++|++++|+..
T Consensus 260 ~l~~~----------~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 260 KITDE----------SLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp BCCHH----------HHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cccCc----------chhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 31100 00001112334889999999998888888876 68999999999998644
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=1.8e-18 Score=189.20 Aligned_cols=233 Identities=20% Similarity=0.273 Sum_probs=189.3
Q ss_pred eecCCccCCCCcccccceeEEEEEcCCCCCCCCC-C-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCC
Q 042822 266 VRNGDVWEWPDKDALKKCYAISWIDSSGGELPEG-L-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLF 343 (775)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~lp~~-~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~ 343 (775)
..+..+...|. ....+++.|++.+|.+..++.. + ++++|++|++++|.+. .++...|.++++|++|++++|.++
T Consensus 50 c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~---~i~~~~~~~l~~L~~L~L~~n~l~ 125 (440)
T 3zyj_A 50 CVRKNLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR---TIEIGAFNGLANLNTLELFDNRLT 125 (440)
T ss_dssp CCSCCCSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC---EECGGGGTTCSSCCEEECCSSCCS
T ss_pred eCCCCcCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC---ccChhhccCCccCCEEECCCCcCC
Confidence 34445555554 4567899999999999888743 3 8999999999999887 677777899999999999999999
Q ss_pred CCCc-ccccccCccEEEcCCCCCCC-c-cccccCCcccEEEecCC-CCcccch-hhhccCCCCEecccCCccccccchHH
Q 042822 344 SLPS-SIDLLLNLRTLCLDHGTLGD-I-TIIGELKNLEILSLIGS-DIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAANL 418 (775)
Q Consensus 344 ~lp~-~i~~l~~L~~L~L~~~~l~~-p-~~i~~l~~L~~L~l~~~-~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~ 418 (775)
.+|. .+..+++|++|++++|.+.. + ..+.++++|++|++++| .+..+|. .+.++++|++|++++| .++.+|.
T Consensus 126 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~-- 202 (440)
T 3zyj_A 126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN-- 202 (440)
T ss_dssp SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCC--
T ss_pred eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccc--
Confidence 8876 68999999999999999988 3 46899999999999996 6777776 5889999999999998 6788886
Q ss_pred hhccccccEEEcCCCcccceecccCCccccccccccccCCCCCCCEEEEEeeCCCCCCCccccccccceEEEecCCCCCC
Q 042822 419 IASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEP 498 (775)
Q Consensus 419 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~ 498 (775)
+..+++|++|++++|.+....+ ..+..+++|+.|++++|.+..++...
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~~~-------------~~~~~l~~L~~L~L~~n~l~~~~~~~------------------- 250 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAIRP-------------GSFQGLMHLQKLWMIQSQIQVIERNA------------------- 250 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEECT-------------TTTTTCTTCCEEECTTCCCCEECTTS-------------------
T ss_pred cCCCcccCEEECCCCccCccCh-------------hhhccCccCCEEECCCCceeEEChhh-------------------
Confidence 8999999999999998875444 67889999999999988776554321
Q ss_pred ccccccccccccccccccccccccceEEEeccCccccccc-ccccccceEEeecccC
Q 042822 499 PVILSKDWFRISRSHFLILDHQSLRMLKLKLNCKTICSRK-LQGIRKVEYLCLDKFQ 554 (775)
Q Consensus 499 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~ 554 (775)
+..+++|+.|+++++.....+.. +..+++|+.|++++|+
T Consensus 251 -----------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 251 -----------------FDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp -----------------STTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred -----------------hcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 11267788888887666555543 3478888888888875
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=1.6e-18 Score=177.91 Aligned_cols=179 Identities=24% Similarity=0.306 Sum_probs=108.4
Q ss_pred cccceeEEEEEcCCCCCCCCC-C-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCC-CCCC-CcccccccC
Q 042822 279 ALKKCYAISWIDSSGGELPEG-L-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQ-LFSL-PSSIDLLLN 354 (775)
Q Consensus 279 ~~~~~~~l~l~~~~~~~lp~~-~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~-~~~l-p~~i~~l~~ 354 (775)
.+.++++|++.++.+..++.. + .+++|++|++++|.+. .++...|..+++|++|++++|. +..+ |..+..+++
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~ 106 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA---RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTT
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc---eeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcC
Confidence 345666666666666665542 2 5666666666666554 3433344666666666666665 5555 455666666
Q ss_pred ccEEEcCCCCCCC--ccccccCCcccEEEecCCCCcccchh-hhccCCCCEecccCCccccccchHHhhccccccEEEcC
Q 042822 355 LRTLCLDHGTLGD--ITIIGELKNLEILSLIGSDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMS 431 (775)
Q Consensus 355 L~~L~L~~~~l~~--p~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~ 431 (775)
|++|++++|.+.. +..++++++|++|++++|.++.+|.. ++.+++|++|++++| .++.+|...++++++|++|+++
T Consensus 107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLH 185 (285)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC-cccccCHHHhcCccccCEEECC
Confidence 6666666666655 34466666666666666666655543 566666666666665 4555555446666666666666
Q ss_pred CCcccceecccCCccccccccccccCCCCCCCEEEEEeeCCCC
Q 042822 432 NCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNA 474 (775)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~ 474 (775)
+|.+....+ ..+..+++|+.|++++|.+..
T Consensus 186 ~n~l~~~~~-------------~~~~~l~~L~~L~l~~n~l~~ 215 (285)
T 1ozn_A 186 QNRVAHVHP-------------HAFRDLGRLMTLYLFANNLSA 215 (285)
T ss_dssp SSCCCEECT-------------TTTTTCTTCCEEECCSSCCSC
T ss_pred CCcccccCH-------------hHccCcccccEeeCCCCcCCc
Confidence 666553322 445556666666666554443
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=2.8e-20 Score=193.92 Aligned_cols=246 Identities=15% Similarity=0.082 Sum_probs=161.9
Q ss_pred CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEEEcCCCCCCCccccccCCcccEE
Q 042822 301 ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGDITIIGELKNLEIL 380 (775)
Q Consensus 301 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~p~~i~~l~~L~~L 380 (775)
.+++|++|++++|.+. .++...|..+++|++|++++|.+..+++ ++.+++|++|++++|.++. +...++|++|
T Consensus 32 ~~~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~---l~~~~~L~~L 104 (317)
T 3o53_A 32 SAWNVKELDLSGNPLS---QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE---LLVGPSIETL 104 (317)
T ss_dssp TGGGCSEEECTTSCCC---CCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEE---EEECTTCCEE
T ss_pred cCCCCCEEECcCCccC---cCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccc---ccCCCCcCEE
Confidence 4567888888888776 4555556888888888888888876554 7788888888888887665 2234788888
Q ss_pred EecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccceecccCCcccccccccccc-CCC
Q 042822 381 SLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDEL-MPL 459 (775)
Q Consensus 381 ~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~l 459 (775)
++++|.++.+|.. .+++|++|++++| .+..++...++.+++|++|++++|.+....+ ..+ ..+
T Consensus 105 ~l~~n~l~~~~~~--~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------------~~~~~~l 168 (317)
T 3o53_A 105 HAANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-------------AELAASS 168 (317)
T ss_dssp ECCSSCCSEEEEC--CCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCEEEG-------------GGGGGGT
T ss_pred ECCCCccCCcCcc--ccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCcccH-------------HHHhhcc
Confidence 8888888776643 4677888888887 4555655447778888888888887764333 333 356
Q ss_pred CCCCEEEEEeeCCCCCCCccccccccceEEEecCCCCCCccccccccccccccccccccccccceEEEeccCcccccccc
Q 042822 460 PRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNCKTICSRKL 539 (775)
Q Consensus 460 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l 539 (775)
++|+.|++++|.+..++.... +++|+.|+++++.....|..+
T Consensus 169 ~~L~~L~L~~N~l~~~~~~~~--------------------------------------l~~L~~L~Ls~N~l~~l~~~~ 210 (317)
T 3o53_A 169 DTLEHLNLQYNFIYDVKGQVV--------------------------------------FAKLKTLDLSSNKLAFMGPEF 210 (317)
T ss_dssp TTCCEEECTTSCCCEEECCCC--------------------------------------CTTCCEEECCSSCCCEECGGG
T ss_pred CcCCEEECCCCcCcccccccc--------------------------------------cccCCEEECCCCcCCcchhhh
Confidence 778888887776554432111 566777777776666666666
Q ss_pred cccccceEEeecccCCcccccccccccccccCcEEEeecCCCccccccCCCcccCCcccccceeecccccccccc
Q 042822 540 QGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKTI 614 (775)
Q Consensus 540 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~ 614 (775)
..+++|++|++++|.. +.++.. ...+++|+.|++++++-.... .......+++|+.|.+.++..++..
T Consensus 211 ~~l~~L~~L~L~~N~l-~~l~~~--~~~l~~L~~L~l~~N~~~~~~----~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 211 QSAAGVTWISLRNNKL-VLIEKA--LRFSQNLEHFDLRGNGFHCGT----LRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp GGGTTCSEEECTTSCC-CEECTT--CCCCTTCCEEECTTCCCBHHH----HHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred cccCcccEEECcCCcc-cchhhH--hhcCCCCCEEEccCCCccCcC----HHHHHhccccceEEECCCchhccCC
Confidence 6777788888877743 344433 244677777777776532000 0012234566666666666555443
No 67
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=2e-18 Score=189.50 Aligned_cols=233 Identities=20% Similarity=0.222 Sum_probs=187.4
Q ss_pred eecCCccCCCCcccccceeEEEEEcCCCCCCCCC-C-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCC
Q 042822 266 VRNGDVWEWPDKDALKKCYAISWIDSSGGELPEG-L-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLF 343 (775)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~lp~~-~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~ 343 (775)
..+..+...|. ....+++.|++.+|.+..++.. + .+++|++|++++|.+. .++...|.++++|++|++++|.++
T Consensus 61 c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~ 136 (452)
T 3zyi_A 61 CTRRGLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR---QIEVGAFNGLASLNTLELFDNWLT 136 (452)
T ss_dssp CCSSCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC---CcChhhccCcccCCEEECCCCcCC
Confidence 34444555553 4567899999999999887543 3 8999999999999887 566667799999999999999999
Q ss_pred CCCcc-cccccCccEEEcCCCCCCC-c-cccccCCcccEEEecCC-CCcccch-hhhccCCCCEecccCCccccccchHH
Q 042822 344 SLPSS-IDLLLNLRTLCLDHGTLGD-I-TIIGELKNLEILSLIGS-DIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAANL 418 (775)
Q Consensus 344 ~lp~~-i~~l~~L~~L~L~~~~l~~-p-~~i~~l~~L~~L~l~~~-~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~ 418 (775)
.+|.. ++.+++|++|++++|.+.. + ..+.++++|++|++++| .+..+|. .+..+++|++|++++| .+..+|.
T Consensus 137 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~-- 213 (452)
T 3zyi_A 137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPN-- 213 (452)
T ss_dssp BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCC--
T ss_pred ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-ccccccc--
Confidence 88754 8899999999999999988 3 46899999999999996 7777776 4889999999999998 6777875
Q ss_pred hhccccccEEEcCCCcccceecccCCccccccccccccCCCCCCCEEEEEeeCCCCCCCccccccccceEEEecCCCCCC
Q 042822 419 IASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEP 498 (775)
Q Consensus 419 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~ 498 (775)
+..+++|++|++++|.+....+ ..+..+++|+.|++++|.+..++...
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~-------------~~~~~l~~L~~L~L~~n~l~~~~~~~------------------- 261 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRP-------------GSFHGLSSLKKLWVMNSQVSLIERNA------------------- 261 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECG-------------GGGTTCTTCCEEECTTSCCCEECTTT-------------------
T ss_pred ccccccccEEECcCCcCcccCc-------------ccccCccCCCEEEeCCCcCceECHHH-------------------
Confidence 8899999999999999875544 67889999999999988776543321
Q ss_pred ccccccccccccccccccccccccceEEEeccCccccccc-ccccccceEEeecccC
Q 042822 499 PVILSKDWFRISRSHFLILDHQSLRMLKLKLNCKTICSRK-LQGIRKVEYLCLDKFQ 554 (775)
Q Consensus 499 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~ 554 (775)
+..+++|+.|+++++.....+.. +..+++|+.|++++|+
T Consensus 262 -----------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 262 -----------------FDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp -----------------TTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred -----------------hcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 11167777777777666555543 3478888888888775
No 68
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.78 E-value=5.7e-21 Score=210.94 Aligned_cols=334 Identities=20% Similarity=0.177 Sum_probs=218.6
Q ss_pred ccceeEEEEEcCCCC-----CCCCCC-CCCCccEEEcccCCCCCccccChhhhhCCC----cccEEEecCCCCC-----C
Q 042822 280 LKKCYAISWIDSSGG-----ELPEGL-ECPQLELLLLSSKHSSVDVNIPRSFFTGMR----ELKVVDLTNMQLF-----S 344 (775)
Q Consensus 280 ~~~~~~l~l~~~~~~-----~lp~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~----~L~~L~l~~~~~~-----~ 344 (775)
.++++.|++.+|.+. .++..+ .+++|++|++++|.+.. ..+..++..++ +|++|++++|.++ .
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~--~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 104 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD--VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH--HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh--HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence 457899999999876 334444 78999999999997653 23445556666 7999999999998 4
Q ss_pred CCcccccccCccEEEcCCCCCCC--ccccc-----cCCcccEEEecCCCCcc-----cchhhhccCCCCEecccCCcccc
Q 042822 345 LPSSIDLLLNLRTLCLDHGTLGD--ITIIG-----ELKNLEILSLIGSDIVE-----FPEELGKLTKLRLLDLTNCFHLK 412 (775)
Q Consensus 345 lp~~i~~l~~L~~L~L~~~~l~~--p~~i~-----~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~l~ 412 (775)
+|..+..+++|++|++++|.+.. +..+. ...+|++|++++|.++. ++..+..+++|++|++++|. ++
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~ 183 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-IN 183 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CH
T ss_pred HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cc
Confidence 58889999999999999999865 33333 35689999999998884 46678889999999999985 44
Q ss_pred ccchHHhh-----ccccccEEEcCCCcccceecccCCccccccccccccCCCCCCCEEEEEeeCCCCCCCccccccccce
Q 042822 413 VIAANLIA-----SFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERF 487 (775)
Q Consensus 413 ~~p~~~l~-----~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L 487 (775)
......+. ..++|++|++++|.+.... .......+..+++|++|++++|.+..... .. +
T Consensus 184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~---------~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~----~~---l 247 (461)
T 1z7x_W 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDN---------CRDLCGIVASKASLRELALGSNKLGDVGM----AE---L 247 (461)
T ss_dssp HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH---------HHHHHHHHHHCTTCCEEECCSSBCHHHHH----HH---H
T ss_pred hHHHHHHHHHHhcCCCCceEEEccCCCCcHHH---------HHHHHHHHHhCCCccEEeccCCcCChHHH----HH---H
Confidence 43222233 3569999999999876211 11233566788999999998775432100 00 0
Q ss_pred EEEecCCCCCCccccccccccccccccccccccccceEEEeccCccc-----ccccccccccceEEeecccCCccccccc
Q 042822 488 KILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNCKTI-----CSRKLQGIRKVEYLCLDKFQGVKNILFE 562 (775)
Q Consensus 488 ~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 562 (775)
.......+++|+.|+++++.... .+..+..+++|++|++++|.. ++....
T Consensus 248 ------------------------~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i-~~~~~~ 302 (461)
T 1z7x_W 248 ------------------------CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL-GDEGAR 302 (461)
T ss_dssp ------------------------HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC-HHHHHH
T ss_pred ------------------------HHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC-chHHHH
Confidence 00000116778888888765444 355555688899999988753 222111
Q ss_pred cc----ccccccCcEEEeecCCCccccccCCCcccCCcccccceeeccccccccccccccc--C-cccccCCCeEEeccC
Q 042822 563 LD----TQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKTICVDRL--S-TESFAELRTMKVENC 635 (775)
Q Consensus 563 ~~----~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~--~-~~~~~~L~~L~l~~C 635 (775)
.. ....++|+.|++++|. ++.............+++|+.|+++++. +........ . ....++|++|++++|
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCC
Confidence 11 1123688999998885 2211000000122345788888888873 333210000 0 012578999999987
Q ss_pred CCCC-----ccccchhhcCCCCccEEEEeccc
Q 042822 636 DELS-----NIFVLSTTKCLPSLQRIAVIKCN 662 (775)
Q Consensus 636 ~~L~-----~l~~~~~~~~l~~L~~L~l~~C~ 662 (775)
.++ .++. .+..+++|++|++++|+
T Consensus 381 -~i~~~~~~~l~~--~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 381 -DVSDSSCSSLAA--TLLANHSLRELDLSNNC 409 (461)
T ss_dssp -CCCHHHHHHHHH--HHHHCCCCCEEECCSSS
T ss_pred -CCChhhHHHHHH--HHHhCCCccEEECCCCC
Confidence 455 3443 56678899999998775
No 69
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=4.2e-20 Score=210.88 Aligned_cols=350 Identities=17% Similarity=0.121 Sum_probs=223.0
Q ss_pred CCCCccEEEcccCCCCC-ccccC-----------hhhhhCCCcccEEEecCCCCC-CCCcccccc--cCccEEEcCCCC-
Q 042822 301 ECPQLELLLLSSKHSSV-DVNIP-----------RSFFTGMRELKVVDLTNMQLF-SLPSSIDLL--LNLRTLCLDHGT- 364 (775)
Q Consensus 301 ~~~~Lr~L~l~~~~~~~-~~~l~-----------~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l--~~L~~L~L~~~~- 364 (775)
.+++|++|+++++.... .+.+| ..++..+++|++|++++|.++ ..+..++.+ .+|++|++++|.
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~ 150 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG 150 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC
Confidence 68889999998764311 00111 223347899999999999877 334556553 459999999987
Q ss_pred CCC---ccccccCCcccEEEecCCCCcc-----cchhhhccCCCCEecccCCccc----cccchHHhhccccccEEEcCC
Q 042822 365 LGD---ITIIGELKNLEILSLIGSDIVE-----FPEELGKLTKLRLLDLTNCFHL----KVIAANLIASFTRLEELYMSN 432 (775)
Q Consensus 365 l~~---p~~i~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~l----~~~p~~~l~~L~~L~~L~l~~ 432 (775)
+.. +..+.++++|++|++++|.++. ++.....+++|++|++++|... ..++.. +.++++|++|++++
T Consensus 151 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~-~~~~~~L~~L~L~~ 229 (592)
T 3ogk_B 151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETI-ARNCRSLVSVKVGD 229 (592)
T ss_dssp EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHH-HHHCTTCCEEECSS
T ss_pred cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHH-HhhCCCCcEEeccC
Confidence 322 2234588999999999997652 4556678999999999988532 234443 67899999999999
Q ss_pred CcccceecccCCccccccccccccCCCCCCCEEEEEeeCCC----CCCCcc-ccccccceEEEecCCCCCCccccccccc
Q 042822 433 CFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDN----ALPEGF-FVRELERFKILIGDRSFEPPVILSKDWF 507 (775)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~----~~~~~~-~~~~L~~L~l~~~~~~~l~~l~~~~~~~ 507 (775)
|.+.. ....+..+++|+.|.++.+... ..+..+ .+++|+.+.+.......++
T Consensus 230 ~~~~~--------------l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~--------- 286 (592)
T 3ogk_B 230 FEILE--------------LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMP--------- 286 (592)
T ss_dssp CBGGG--------------GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGG---------
T ss_pred ccHHH--------------HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHH---------
Confidence 87652 2256778899999999854322 111111 3466776665432211111
Q ss_pred cccccccccccccccceEEEeccCccc--ccccccccccceEEeecccCCcccccccccccccccCcEEEeec-------
Q 042822 508 RISRSHFLILDHQSLRMLKLKLNCKTI--CSRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQN------- 578 (775)
Q Consensus 508 ~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~------- 578 (775)
..+..+++|+.|+++++.... ....+..+++|++|+++++. .+.........+++|++|++.+
T Consensus 287 ------~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~--~~~~l~~~~~~~~~L~~L~L~~g~~~~~~ 358 (592)
T 3ogk_B 287 ------ILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVI--GDRGLEVLAQYCKQLKRLRIERGADEQGM 358 (592)
T ss_dssp ------GGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGG--HHHHHHHHHHHCTTCCEEEEECCCCSSTT
T ss_pred ------HHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCcc--CHHHHHHHHHhCCCCCEEEeecCcccccc
Confidence 122337899999998865221 11224588999999998442 2222222234578999999995
Q ss_pred ---CCCccccccCCCcccCCcccccceeecccccccccccccccCc-ccccCCCeEEecc---CCCCCccccc----hhh
Q 042822 579 ---NPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKTICVDRLST-ESFAELRTMKVEN---CDELSNIFVL----STT 647 (775)
Q Consensus 579 ---~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~-~~~~~L~~L~l~~---C~~L~~l~~~----~~~ 647 (775)
|..++... .......+|+|+.|.+ .|..+..-. .... ..+++|++|++.+ |+.++..|.. ..+
T Consensus 359 ~~~~~~~~~~~---~~~l~~~~~~L~~L~l-~~~~l~~~~--~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~ 432 (592)
T 3ogk_B 359 EDEEGLVSQRG---LIALAQGCQELEYMAV-YVSDITNES--LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLL 432 (592)
T ss_dssp SSTTCCCCHHH---HHHHHHHCTTCSEEEE-EESCCCHHH--HHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHH
T ss_pred ccccCccCHHH---HHHHHhhCccCeEEEe-ecCCccHHH--HHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHH
Confidence 66554220 0001234789999999 455554321 1112 2378999999984 6688765321 235
Q ss_pred cCCCCccEEEEecccc-hHHHhhccCCCCcccCCCCCCccccccccCeEecCCCC
Q 042822 648 KCLPSLQRIAVIKCNK-MKEIFAIGGEEPDVADNSNANEKIEFAQIRYLSLGNLP 701 (775)
Q Consensus 648 ~~l~~L~~L~l~~C~~-L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 701 (775)
..+++|++|++++|.. +..... ......+++|++|+|++|.
T Consensus 433 ~~~~~L~~L~L~~~~~~l~~~~~-------------~~~~~~~~~L~~L~L~~n~ 474 (592)
T 3ogk_B 433 IGCKKLRRFAFYLRQGGLTDLGL-------------SYIGQYSPNVRWMLLGYVG 474 (592)
T ss_dssp HHCTTCCEEEEECCGGGCCHHHH-------------HHHHHSCTTCCEEEECSCC
T ss_pred HhCCCCCEEEEecCCCCccHHHH-------------HHHHHhCccceEeeccCCC
Confidence 6799999999988775 222110 0111237889999999875
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=7.4e-20 Score=190.72 Aligned_cols=238 Identities=17% Similarity=0.139 Sum_probs=184.1
Q ss_pred ccceeEEEEEcCCCCCCCC-CC-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccE
Q 042822 280 LKKCYAISWIDSSGGELPE-GL-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRT 357 (775)
Q Consensus 280 ~~~~~~l~l~~~~~~~lp~-~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~ 357 (775)
..++++|++++|.+..+++ .+ .+++|++|++++|.+.. +++ +..+++|++|++++|.++.+| ..++|++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~~--~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~ 103 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE---TLD--LESLSTLRTLDLNNNYVQELL----VGPSIET 103 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE---EEE--ETTCTTCCEEECCSSEEEEEE----ECTTCCE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc---chh--hhhcCCCCEEECcCCcccccc----CCCCcCE
Confidence 4589999999999988874 33 89999999999998863 343 689999999999999988665 3489999
Q ss_pred EEcCCCCCCC-ccccccCCcccEEEecCCCCcccch-hhhccCCCCEecccCCcccccc-chHHhhccccccEEEcCCCc
Q 042822 358 LCLDHGTLGD-ITIIGELKNLEILSLIGSDIVEFPE-ELGKLTKLRLLDLTNCFHLKVI-AANLIASFTRLEELYMSNCF 434 (775)
Q Consensus 358 L~L~~~~l~~-p~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~-p~~~l~~L~~L~~L~l~~~~ 434 (775)
|++++|.+.. +.. .+++|++|++++|.++.++. .++.+++|++|++++|. +..+ +....+.+++|++|++++|.
T Consensus 104 L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 104 LHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp EECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCc
Confidence 9999999987 332 37889999999999997755 78899999999999984 5554 44423579999999999998
Q ss_pred ccceecccCCccccccccccccCCCCCCCEEEEEeeCCCCCCCccccccccceEEEecCCCCCCcccccccccccccccc
Q 042822 435 VEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHF 514 (775)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~~~ 514 (775)
+... .....+++|+.|++++|.+..+|..+
T Consensus 181 l~~~---------------~~~~~l~~L~~L~Ls~N~l~~l~~~~----------------------------------- 210 (317)
T 3o53_A 181 IYDV---------------KGQVVFAKLKTLDLSSNKLAFMGPEF----------------------------------- 210 (317)
T ss_dssp CCEE---------------ECCCCCTTCCEEECCSSCCCEECGGG-----------------------------------
T ss_pred Cccc---------------ccccccccCCEEECCCCcCCcchhhh-----------------------------------
Confidence 7632 22345889999999998877655421
Q ss_pred ccccccccceEEEeccCcccccccccccccceEEeecccCCc-ccccccccccccccCcEEEeecCCCcc
Q 042822 515 LILDHQSLRMLKLKLNCKTICSRKLQGIRKVEYLCLDKFQGV-KNILFELDTQGFSQLKHLLVQNNPDLL 583 (775)
Q Consensus 515 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~l~ 583 (775)
..+++|+.|+++++.....|..+..+++|+.|++++|... ...+.. ...+++|+.|++.++..++
T Consensus 211 --~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~--~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 211 --QSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF--FSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp --GGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHH--HHTCHHHHHHHHHHHHHHH
T ss_pred --cccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHH--HhccccceEEECCCchhcc
Confidence 1167788888888777777777778889999999888755 222222 3457788888887665443
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.76 E-value=1.7e-19 Score=205.99 Aligned_cols=365 Identities=15% Similarity=0.077 Sum_probs=185.8
Q ss_pred CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCC-CCCC--CCcccccccCccEEEcCCCCCCC--cccc----
Q 042822 301 ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNM-QLFS--LPSSIDLLLNLRTLCLDHGTLGD--ITII---- 371 (775)
Q Consensus 301 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~-~~~~--lp~~i~~l~~L~~L~L~~~~l~~--p~~i---- 371 (775)
.+++|++|++++|.... ..+..+...+++|++|++++| .++. ++..+.++++|++|++++|.+.. +..+
T Consensus 103 ~~~~L~~L~L~~~~~~~--~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTD--DCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HCTTCCEEEEESCBCCH--HHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred hCCCCCeEEeeCcEEcH--HHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 46677777777765442 233333335677777777776 3432 44444567777777777776544 2222
Q ss_pred ccCCcccEEEecCCC--Cc--ccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccc------eec-
Q 042822 372 GELKNLEILSLIGSD--IV--EFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEW------KVE- 440 (775)
Q Consensus 372 ~~l~~L~~L~l~~~~--l~--~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~------~~~- 440 (775)
..+++|++|++++|. +. .++..+.++++|++|++++|..++.++.. ++++++|++|++..+...- .++
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 259 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGYTAEVRPDVYSGLSV 259 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccccCccchhhHHHHHH
Confidence 255677777777764 22 23333445677777777777555555554 6677777777765442100 000
Q ss_pred ------cc----CCccccccccccccCCCCCCCEEEEEeeCCCCC--CCcc-ccccccceEEEecCCCCCCccccccccc
Q 042822 441 ------DE----GSSSKRSKASLDELMPLPRLTTLEIAVENDNAL--PEGF-FVRELERFKILIGDRSFEPPVILSKDWF 507 (775)
Q Consensus 441 ------~~----~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~--~~~~-~~~~L~~L~l~~~~~~~l~~l~~~~~~~ 507 (775)
.. +............+..+++|++|+++++..... ...+ .+++|+.|.+..+. .
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~-~------------ 326 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI-E------------ 326 (594)
T ss_dssp HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGG-H------------
T ss_pred HHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCcc-C------------
Confidence 00 000000011111222456666666665542210 0000 23556666555321 0
Q ss_pred cccccccccccccccceEEEecc--------Cccc--cccccc-ccccceEEeecccCCcccccccccccccccCcEEEe
Q 042822 508 RISRSHFLILDHQSLRMLKLKLN--------CKTI--CSRKLQ-GIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLV 576 (775)
Q Consensus 508 ~~~~~~~~~~~~~~L~~L~l~~~--------~~~~--~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l 576 (775)
..........+++|+.|++.++ .... ....+. .+++|++|.+. |..+++.........+++|+.|++
T Consensus 327 -~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L 404 (594)
T 2p1m_B 327 -DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF-CRQMTNAALITIARNRPNMTRFRL 404 (594)
T ss_dssp -HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEE
T ss_pred -HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEe
Confidence 0000000112667777777431 1100 011111 36777777543 434443322222234778888888
Q ss_pred e-----cCCCccccccC-CCcccCCcccccceeecccccccccccccccCcc-cccCCCeEEeccCCCCCccccchhhcC
Q 042822 577 Q-----NNPDLLFIVDS-REIVDCDAFPLLELLSLQNLINLKTICVDRLSTE-SFAELRTMKVENCDELSNIFVLSTTKC 649 (775)
Q Consensus 577 ~-----~~~~l~~i~~~-~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~-~~~~L~~L~l~~C~~L~~l~~~~~~~~ 649 (775)
. +|..++..... ........+++|+.|++.+ .+.... ..... .+++|+.|++++|. +++.........
T Consensus 405 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~--~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~ 479 (594)
T 2p1m_B 405 CIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKV--FEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSG 479 (594)
T ss_dssp EESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHH--HHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHH
T ss_pred ecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHH--HHHHHHhchhccEeeccCCC-CcHHHHHHHHhc
Confidence 8 45555422100 0000124567888888865 333221 01111 37889999998875 444322223366
Q ss_pred CCCccEEEEecccchHHHhhccCCCCcccCCCCCCccccccccCeEecCCCCC
Q 042822 650 LPSLQRIAVIKCNKMKEIFAIGGEEPDVADNSNANEKIEFAQIRYLSLGNLPE 702 (775)
Q Consensus 650 l~~L~~L~l~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 702 (775)
+++|++|++++|+- ..... ......+++|+.|++++|+.
T Consensus 480 ~~~L~~L~L~~n~~-~~~~~-------------~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 480 CDSLRKLEIRDCPF-GDKAL-------------LANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCSC-CHHHH-------------HHTGGGGGGSSEEEEESSCC
T ss_pred CCCcCEEECcCCCC-cHHHH-------------HHHHHhCCCCCEEeeeCCCC
Confidence 89999999999885 22210 11223578999999999975
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.74 E-value=1.3e-17 Score=170.86 Aligned_cols=181 Identities=23% Similarity=0.252 Sum_probs=152.4
Q ss_pred ccceeEEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEEE
Q 042822 280 LKKCYAISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTLC 359 (775)
Q Consensus 280 ~~~~~~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 359 (775)
..+++.+++.++.+..+|..+. ++++.|++++|.+. .++...|..+++|++|++++|.++.+|.. +.+++|++|+
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLY---TFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCS---EEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred cCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCC---ccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence 4568888998888888887663 78999999999887 56656678999999999999999987664 7899999999
Q ss_pred cCCCCCCC-ccccccCCcccEEEecCCCCcccc-hhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccc
Q 042822 360 LDHGTLGD-ITIIGELKNLEILSLIGSDIVEFP-EELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEW 437 (775)
Q Consensus 360 L~~~~l~~-p~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~ 437 (775)
+++|.++. |..+..+++|++|++++|.++.+| ..+..+++|++|++++| .+..+|.+.+..+++|++|++++|.+..
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcCCc
Confidence 99999988 777889999999999999999887 45889999999999998 6778888778899999999999998763
Q ss_pred eecccCCccccccccccccCCCCCCCEEEEEeeCCCCCCCcc
Q 042822 438 KVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPEGF 479 (775)
Q Consensus 438 ~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~ 479 (775)
..+ ..+..+++|+.|++++|.+..+|..+
T Consensus 163 l~~-------------~~~~~l~~L~~L~L~~N~l~~ip~~~ 191 (290)
T 1p9a_G 163 LPA-------------GLLNGLENLDTLLLQENSLYTIPKGF 191 (290)
T ss_dssp CCT-------------TTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCH-------------HHhcCcCCCCEEECCCCcCCccChhh
Confidence 222 44677899999999999888887753
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.74 E-value=1.6e-17 Score=169.52 Aligned_cols=140 Identities=20% Similarity=0.313 Sum_probs=92.0
Q ss_pred CCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCC-cccccccCccEEEcCCCCCCC--
Q 042822 291 SSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLP-SSIDLLLNLRTLCLDHGTLGD-- 367 (775)
Q Consensus 291 ~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~l~~-- 367 (775)
..+..+|..+. ++|++|++++|.+. .++...|.++++|++|++++|.+..++ ..++++++|++|++++|.+..
T Consensus 17 ~~l~~ip~~l~-~~l~~L~ls~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (276)
T 2z62_A 17 LNFYKIPDNLP-FSTKNLDLSFNPLR---HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92 (276)
T ss_dssp SCCSSCCSSSC-TTCCEEECTTCCCC---EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCccccCCCCC-CCccEEECCCCccc---ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC
Confidence 34445555432 45777777777665 455544567777777777777777554 356777777777777777766
Q ss_pred ccccccCCcccEEEecCCCCcccch-hhhccCCCCEecccCCccccc--cchHHhhccccccEEEcCCCccc
Q 042822 368 ITIIGELKNLEILSLIGSDIVEFPE-ELGKLTKLRLLDLTNCFHLKV--IAANLIASFTRLEELYMSNCFVE 436 (775)
Q Consensus 368 p~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~--~p~~~l~~L~~L~~L~l~~~~~~ 436 (775)
+..++++++|++|++++|.++.++. .++++++|++|++++|. +.. +|.. ++++++|++|++++|.+.
T Consensus 93 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~-~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchh-hccCCCCCEEECCCCCCC
Confidence 3457777777777777777776654 46777777777777763 433 4554 677777777777777655
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=2.8e-17 Score=166.91 Aligned_cols=178 Identities=24% Similarity=0.335 Sum_probs=135.9
Q ss_pred ceeEEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcc-cccccCccEEEc
Q 042822 282 KCYAISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSS-IDLLLNLRTLCL 360 (775)
Q Consensus 282 ~~~~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~L 360 (775)
..+.+++.++.+..+|..+. ++++.|++++|.+. .++...|.++++|++|++++|.++.+|.. +.++++|++|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLS---SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCS---CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCC---eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 35677777777777776553 67888888888776 56665668888888888888888877765 477888888888
Q ss_pred CCCCCCC-c-cccccCCcccEEEecCCCCcccch-hhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccc
Q 042822 361 DHGTLGD-I-TIIGELKNLEILSLIGSDIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEW 437 (775)
Q Consensus 361 ~~~~l~~-p-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~ 437 (775)
++|.+.. + ..++++++|++|++++|.++.+|. .++.+++|++|++++| .+..+|...++.+++|++|++++|.+..
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCcE
Confidence 8888877 3 456788888888888888887765 4678888888888887 5677777667888888888888887663
Q ss_pred eecccCCccccccccccccCCCCCCCEEEEEeeCCCCCCC
Q 042822 438 KVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPE 477 (775)
Q Consensus 438 ~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~ 477 (775)
..+ ..+..+++|+.|++++|.+..++.
T Consensus 172 ~~~-------------~~~~~l~~L~~L~L~~N~l~~~~~ 198 (270)
T 2o6q_A 172 VPE-------------GAFDKLTELKTLKLDNNQLKRVPE 198 (270)
T ss_dssp CCT-------------TTTTTCTTCCEEECCSSCCSCCCT
T ss_pred eCh-------------hHhccCCCcCEEECCCCcCCcCCH
Confidence 222 446778888888888887776655
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.73 E-value=5.3e-17 Score=164.89 Aligned_cols=190 Identities=24% Similarity=0.341 Sum_probs=159.9
Q ss_pred eecCCccCCCCcccccceeEEEEEcCCCCCCCCC-C-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCC
Q 042822 266 VRNGDVWEWPDKDALKKCYAISWIDSSGGELPEG-L-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLF 343 (775)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~lp~~-~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~ 343 (775)
..+..+..+|. ..+..+++|++.+|.+..++.. + .+++|++|++++|.+. .++..+|..+++|++|++++|.+.
T Consensus 23 ~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~i~~~~~~~l~~L~~L~l~~n~l~ 98 (270)
T 2o6q_A 23 CSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ---TLPAGIFKELKNLETLWVTDNKLQ 98 (270)
T ss_dssp CTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS---CCCTTTTSSCTTCCEEECCSSCCC
T ss_pred ccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC---eeChhhhcCCCCCCEEECCCCcCC
Confidence 33344444443 4557899999999999988863 3 8999999999999887 688888899999999999999999
Q ss_pred CCCc-ccccccCccEEEcCCCCCCC--ccccccCCcccEEEecCCCCcccchh-hhccCCCCEecccCCccccccchHHh
Q 042822 344 SLPS-SIDLLLNLRTLCLDHGTLGD--ITIIGELKNLEILSLIGSDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAANLI 419 (775)
Q Consensus 344 ~lp~-~i~~l~~L~~L~L~~~~l~~--p~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~l 419 (775)
.+|. .+..+++|++|++++|.++. +..++++++|++|++++|.++.+|.. +..+++|++|++++| .+..++...+
T Consensus 99 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 177 (270)
T 2o6q_A 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAF 177 (270)
T ss_dssp CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTT
T ss_pred cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC-cCcEeChhHh
Confidence 8875 56899999999999999988 35589999999999999999988876 789999999999998 6777887668
Q ss_pred hccccccEEEcCCCcccceecccCCccccccccccccCCCCCCCEEEEEeeCCC
Q 042822 420 ASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDN 473 (775)
Q Consensus 420 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~ 473 (775)
+++++|++|++++|.+....+ ..+..+++|+.|++++|...
T Consensus 178 ~~l~~L~~L~L~~N~l~~~~~-------------~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 178 DKLTELKTLKLDNNQLKRVPE-------------GAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTCTTCCEEECCSSCCSCCCT-------------TTTTTCTTCCEEECCSSCBC
T ss_pred ccCCCcCEEECCCCcCCcCCH-------------HHhccccCCCEEEecCCCee
Confidence 999999999999998763222 45778899999999988643
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.73 E-value=8.2e-18 Score=174.79 Aligned_cols=199 Identities=18% Similarity=0.197 Sum_probs=137.4
Q ss_pred CCCCccEEEcccCCCCCccccChhhh-hCCCcccEEEecCCCCCCCCcccccc-----cCccEEEcCCCCCCC--ccccc
Q 042822 301 ECPQLELLLLSSKHSSVDVNIPRSFF-TGMRELKVVDLTNMQLFSLPSSIDLL-----LNLRTLCLDHGTLGD--ITIIG 372 (775)
Q Consensus 301 ~~~~Lr~L~l~~~~~~~~~~l~~~~~-~~l~~L~~L~l~~~~~~~lp~~i~~l-----~~L~~L~L~~~~l~~--p~~i~ 372 (775)
.+++|++|++++|.+.. .+|..+| ..+++|++|++++|.++.+|..++.+ ++|++|++++|.+.. +..++
T Consensus 93 ~l~~L~~L~L~~n~l~~--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTG--TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBS--CCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred CcCCccEEEccCCcccc--hhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 46777888888777664 5565543 67778888888888887777777776 778888888888776 35677
Q ss_pred cCCcccEEEecCCCCcc---cchhh--hccCCCCEecccCCcccc---ccchHHhhccccccEEEcCCCcccceecccCC
Q 042822 373 ELKNLEILSLIGSDIVE---FPEEL--GKLTKLRLLDLTNCFHLK---VIAANLIASFTRLEELYMSNCFVEWKVEDEGS 444 (775)
Q Consensus 373 ~l~~L~~L~l~~~~l~~---lp~~i--~~l~~L~~L~l~~~~~l~---~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~ 444 (775)
++++|++|++++|.+.. +|..+ +.+++|++|++++| .++ .++...+.++++|++|++++|.+....+
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---- 245 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG---- 245 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC----
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc----
Confidence 88888888888887552 34455 77788888888877 444 3344435567788888888877663322
Q ss_pred ccccccccccccCCCCCCCEEEEEeeCCCCCCCccccccccceEEEecCCCCCCccccccccccccccccccccccccce
Q 042822 445 SSKRSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRM 524 (775)
Q Consensus 445 ~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~ 524 (775)
...+..+++|+.|++++|.+..+|..+ .++|+.
T Consensus 246 --------~~~~~~l~~L~~L~Ls~N~l~~ip~~~---------------------------------------~~~L~~ 278 (312)
T 1wwl_A 246 --------APSCDWPSQLNSLNLSFTGLKQVPKGL---------------------------------------PAKLSV 278 (312)
T ss_dssp --------CSCCCCCTTCCEEECTTSCCSSCCSSC---------------------------------------CSEEEE
T ss_pred --------hhhhhhcCCCCEEECCCCccChhhhhc---------------------------------------cCCceE
Confidence 133455677888888777776666532 245666
Q ss_pred EEEeccCcccccccccccccceEEeecccC
Q 042822 525 LKLKLNCKTICSRKLQGIRKVEYLCLDKFQ 554 (775)
Q Consensus 525 L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 554 (775)
|+++++.....|. +..+++|++|+++++.
T Consensus 279 L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 279 LDLSYNRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp EECCSSCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred EECCCCCCCCChh-HhhCCCCCEEeccCCC
Confidence 6776666555555 6678888888888775
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=2.8e-17 Score=170.12 Aligned_cols=189 Identities=18% Similarity=0.221 Sum_probs=142.2
Q ss_pred cccceeEEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEE
Q 042822 279 ALKKCYAISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTL 358 (775)
Q Consensus 279 ~~~~~~~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 358 (775)
.++++++|++.++.+..++....+++|++|++++|.+. .++. +..+++|++|++++|.+..+| .++.+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~---~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQIT---DLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC---CCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCC---CChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEE
Confidence 35678888888888887775557888888888888776 4554 578888888888888888775 58888888888
Q ss_pred EcCCCCCCCccccccCCcccEEEecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccce
Q 042822 359 CLDHGTLGDITIIGELKNLEILSLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWK 438 (775)
Q Consensus 359 ~L~~~~l~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~ 438 (775)
++++|.++..+.++.+++|++|++++|.++.+|. ++.+++|++|++++| .+..++. ++.+++|++|++++|.+..
T Consensus 113 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~- 187 (308)
T 1h6u_A 113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLKADDNKISD- 187 (308)
T ss_dssp ECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCC-
T ss_pred ECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChh--hcCCCCCCEEECCCCccCc-
Confidence 8888888875568888888888888888887776 888888888888887 5666665 7788888888888887651
Q ss_pred ecccCCccccccccccccCCCCCCCEEEEEeeCCCCCCCccccccccceEEEec
Q 042822 439 VEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIG 492 (775)
Q Consensus 439 ~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 492 (775)
+..+..+++|+.|++++|.+..++....+++|+.|++..+
T Consensus 188 --------------~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 188 --------------ISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQ 227 (308)
T ss_dssp --------------CGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEE
T ss_pred --------------ChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCC
Confidence 1226778888888888877766553223344444444433
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=4.5e-18 Score=187.66 Aligned_cols=216 Identities=17% Similarity=0.138 Sum_probs=146.4
Q ss_pred CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEEEcCCCCCCCccccccCCcccEE
Q 042822 301 ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGDITIIGELKNLEIL 380 (775)
Q Consensus 301 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~p~~i~~l~~L~~L 380 (775)
.+++|++|++++|.+. .+++..|..+++|++|++++|.++..++ ++.+++|++|++++|.++..+ ..++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLS---QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCC---CCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---ECTTCCEE
T ss_pred cCCCccEEEeeCCcCC---CCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---CCCCcCEE
Confidence 3457888888888776 4555556788888888888888875554 788888888888888776522 23778888
Q ss_pred EecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccceecccCCccccccccccccC-CC
Q 042822 381 SLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELM-PL 459 (775)
Q Consensus 381 ~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~-~l 459 (775)
++++|.++.+|.. .+++|++|++++|. +..+++..++.+++|++|++++|.+.+..+ ..+. .+
T Consensus 105 ~L~~N~l~~~~~~--~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------------~~l~~~l 168 (487)
T 3oja_A 105 HAANNNISRVSCS--RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-------------AELAASS 168 (487)
T ss_dssp ECCSSCCCCEEEC--CCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCEEEG-------------GGGGGGT
T ss_pred ECcCCcCCCCCcc--ccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCCcCh-------------HHHhhhC
Confidence 8888888876653 46788888888874 444443337788888888888887775444 4443 67
Q ss_pred CCCCEEEEEeeCCCCCCCccccccccceEEEecCCCCCCccccccccccccccccccccccccceEEEeccCcccccccc
Q 042822 460 PRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNCKTICSRKL 539 (775)
Q Consensus 460 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l 539 (775)
++|+.|++++|.+..++.... +++|+.|+++++.....|+.+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~--------------------------------------l~~L~~L~Ls~N~l~~~~~~~ 210 (487)
T 3oja_A 169 DTLEHLNLQYNFIYDVKGQVV--------------------------------------FAKLKTLDLSSNKLAFMGPEF 210 (487)
T ss_dssp TTCCEEECTTSCCCEEECCCC--------------------------------------CTTCCEEECCSSCCCEECGGG
T ss_pred CcccEEecCCCcccccccccc--------------------------------------CCCCCEEECCCCCCCCCCHhH
Confidence 788888888776655433211 556666666666555555666
Q ss_pred cccccceEEeecccCCcccccccccccccccCcEEEeecCC
Q 042822 540 QGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNP 580 (775)
Q Consensus 540 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 580 (775)
..+++|+.|++++|... .++.. ...+++|+.|++++++
T Consensus 211 ~~l~~L~~L~Ls~N~l~-~lp~~--l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 211 QSAAGVTWISLRNNKLV-LIEKA--LRFSQNLEHFDLRGNG 248 (487)
T ss_dssp GGGTTCSEEECTTSCCC-EECTT--CCCCTTCCEEECTTCC
T ss_pred cCCCCccEEEecCCcCc-ccchh--hccCCCCCEEEcCCCC
Confidence 66777777777776533 33333 2346777777777765
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.73 E-value=1.7e-17 Score=170.05 Aligned_cols=198 Identities=20% Similarity=0.285 Sum_probs=155.0
Q ss_pred CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCC-CcccccccCccEEEcCCCCCCCccccccCCcccE
Q 042822 301 ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSL-PSSIDLLLNLRTLCLDHGTLGDITIIGELKNLEI 379 (775)
Q Consensus 301 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~l~~p~~i~~l~~L~~ 379 (775)
++++++.++++++.+. .+|..+ .+.+++|++++|.++.+ |..+..+++|++|++++|.++..+..+.+++|++
T Consensus 8 ~l~~l~~l~~~~~~l~---~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~ 81 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT---ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT 81 (290)
T ss_dssp CSTTCCEEECTTSCCS---SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCE
T ss_pred ccCCccEEECCCCCCC---cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCE
Confidence 5778999999988877 677655 36889999999999866 5678999999999999999888444588999999
Q ss_pred EEecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccceecccCCccccccccccccCCC
Q 042822 380 LSLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPL 459 (775)
Q Consensus 380 L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l 459 (775)
|++++|.++.+|..+..+++|++|++++| .++.+|.+.++++++|++|++++|.+....+ ..+..+
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~-------------~~~~~l 147 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLPP-------------GLLTPT 147 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCCT-------------TTTTTC
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCccCh-------------hhcccc
Confidence 99999999999998999999999999998 6777776668999999999999998763322 456778
Q ss_pred CCCCEEEEEeeCCCCCCCccccccccceEEEecCCCCCCccccccccccccccccccccccccceEEEeccCcccccccc
Q 042822 460 PRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNCKTICSRKL 539 (775)
Q Consensus 460 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l 539 (775)
++|+.|++++|.+..+|.... ..+++|+.|+++++.....|.++
T Consensus 148 ~~L~~L~L~~N~l~~l~~~~~------------------------------------~~l~~L~~L~L~~N~l~~ip~~~ 191 (290)
T 1p9a_G 148 PKLEKLSLANNNLTELPAGLL------------------------------------NGLENLDTLLLQENSLYTIPKGF 191 (290)
T ss_dssp TTCCEEECTTSCCSCCCTTTT------------------------------------TTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCCCEEECCCCcCCccCHHHh------------------------------------cCcCCCCEEECCCCcCCccChhh
Confidence 899999998887776665310 11566666677666666666666
Q ss_pred cccccceEEeecccC
Q 042822 540 QGIRKVEYLCLDKFQ 554 (775)
Q Consensus 540 ~~l~~L~~L~l~~~~ 554 (775)
..+++|+.|++++++
T Consensus 192 ~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 192 FGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTTCCCSEEECCSCC
T ss_pred cccccCCeEEeCCCC
Confidence 666677777776664
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=2.8e-17 Score=170.18 Aligned_cols=190 Identities=22% Similarity=0.240 Sum_probs=157.1
Q ss_pred CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEEEcCCCCCCCccccccCCcccEE
Q 042822 301 ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGDITIIGELKNLEIL 380 (775)
Q Consensus 301 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~p~~i~~l~~L~~L 380 (775)
.+++|++|++++|.+. .++ . +..+++|++|++++|.+..++. ++.+++|++|++++|.++.++.++++++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~---~l~-~-~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVT---TIE-G-VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCC---CCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCcc---Cch-h-hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEE
Confidence 6788999999999876 455 3 5889999999999999998887 99999999999999999987789999999999
Q ss_pred EecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccceecccCCccccccccccccCCCC
Q 042822 381 SLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLP 460 (775)
Q Consensus 381 ~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~ 460 (775)
++++|.++.+|. +..+++|++|++++| .+..++. ++.+++|++|++++|.+.. +..+..++
T Consensus 113 ~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~---------------~~~l~~l~ 173 (308)
T 1h6u_A 113 DLTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNAQVSD---------------LTPLANLS 173 (308)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCC---------------CGGGTTCT
T ss_pred ECCCCCCCCchh-hcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCCcCCC---------------ChhhcCCC
Confidence 999999998876 899999999999998 5677776 8899999999999997751 12378899
Q ss_pred CCCEEEEEeeCCCCCCCccccccccceEEEecCCCCCCccccccccccccccccccccccccceEEEeccCccccccccc
Q 042822 461 RLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNCKTICSRKLQ 540 (775)
Q Consensus 461 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 540 (775)
+|+.|++++|.+..++.... +++|+.|+++++.....+ .+.
T Consensus 174 ~L~~L~l~~n~l~~~~~l~~--------------------------------------l~~L~~L~L~~N~l~~~~-~l~ 214 (308)
T 1h6u_A 174 KLTTLKADDNKISDISPLAS--------------------------------------LPNLIEVHLKNNQISDVS-PLA 214 (308)
T ss_dssp TCCEEECCSSCCCCCGGGGG--------------------------------------CTTCCEEECTTSCCCBCG-GGT
T ss_pred CCCEEECCCCccCcChhhcC--------------------------------------CCCCCEEEccCCccCccc-ccc
Confidence 99999999887765543111 667777777776665555 367
Q ss_pred ccccceEEeecccC
Q 042822 541 GIRKVEYLCLDKFQ 554 (775)
Q Consensus 541 ~l~~L~~L~l~~~~ 554 (775)
.+++|+.|++++|.
T Consensus 215 ~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 215 NTSNLFIVTLTNQT 228 (308)
T ss_dssp TCTTCCEEEEEEEE
T ss_pred CCCCCCEEEccCCe
Confidence 78888888888775
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=7.1e-17 Score=164.68 Aligned_cols=190 Identities=22% Similarity=0.269 Sum_probs=155.7
Q ss_pred CccCCCCcccccceeEEEEEcCCCCCCCC-CC-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCC-
Q 042822 270 DVWEWPDKDALKKCYAISWIDSSGGELPE-GL-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLP- 346 (775)
Q Consensus 270 ~~~~~~~~~~~~~~~~l~l~~~~~~~lp~-~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp- 346 (775)
.....|. ..+.++++|++.+|.+..++. .+ .+++|++|++++|.+. .++...|..+++|++|++++|.++.++
T Consensus 18 ~l~~ip~-~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (276)
T 2z62_A 18 NFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLILTGNPIQSLAL 93 (276)
T ss_dssp CCSSCCS-SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC---EECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred CccccCC-CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC---ccCHHHccCCcCCCEEECCCCccCccCh
Confidence 3333443 345689999999999988876 33 8999999999999877 577666799999999999999999665
Q ss_pred cccccccCccEEEcCCCCCCC-c-cccccCCcccEEEecCCCCcc--cchhhhccCCCCEecccCCccccccchHHhhcc
Q 042822 347 SSIDLLLNLRTLCLDHGTLGD-I-TIIGELKNLEILSLIGSDIVE--FPEELGKLTKLRLLDLTNCFHLKVIAANLIASF 422 (775)
Q Consensus 347 ~~i~~l~~L~~L~L~~~~l~~-p-~~i~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L 422 (775)
..++++++|++|++++|.+.. + ..++++++|++|++++|.++. +|..++++++|++|++++| .++.++...++.+
T Consensus 94 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l 172 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVL 172 (276)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHH
T ss_pred hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhh
Confidence 679999999999999999988 3 469999999999999999985 7899999999999999998 5666665558888
Q ss_pred cccc----EEEcCCCcccceecccCCccccccccccccCCCCCCCEEEEEeeCCCCCCCc
Q 042822 423 TRLE----ELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPEG 478 (775)
Q Consensus 423 ~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~ 478 (775)
++|+ +|++++|.+....+ ......+|+.|++++|.+..+|..
T Consensus 173 ~~L~~l~l~L~ls~n~l~~~~~--------------~~~~~~~L~~L~L~~n~l~~~~~~ 218 (276)
T 2z62_A 173 HQMPLLNLSLDLSLNPMNFIQP--------------GAFKEIRLKELALDTNQLKSVPDG 218 (276)
T ss_dssp HTCTTCCEEEECCSSCCCEECT--------------TSSCSCCEEEEECCSSCCSCCCTT
T ss_pred hhccccceeeecCCCcccccCc--------------cccCCCcccEEECCCCceeecCHh
Confidence 8887 89999998763322 233344799999999888877764
No 82
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.72 E-value=4.4e-19 Score=202.54 Aligned_cols=326 Identities=14% Similarity=0.081 Sum_probs=195.0
Q ss_pred hhhhCCCcccEEEecCCCCC-CCCcccc-cccCccEEEcCCC-CCCC--ccc-cccCCcccEEEecCCCCcc-----cch
Q 042822 324 SFFTGMRELKVVDLTNMQLF-SLPSSID-LLLNLRTLCLDHG-TLGD--ITI-IGELKNLEILSLIGSDIVE-----FPE 392 (775)
Q Consensus 324 ~~~~~l~~L~~L~l~~~~~~-~lp~~i~-~l~~L~~L~L~~~-~l~~--p~~-i~~l~~L~~L~l~~~~l~~-----lp~ 392 (775)
.++..+++|++|++++|.++ ..+..+. .+++|++|++++| .++. ++. +.++++|++|++++|.++. ++.
T Consensus 99 ~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~ 178 (594)
T 2p1m_B 99 AMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH 178 (594)
T ss_dssp HHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGG
T ss_pred HHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHH
Confidence 34567899999999999887 3344554 6899999999999 4544 333 4589999999999997653 333
Q ss_pred hhhccCCCCEecccCCccccccch----HHhhccccccEEEcCCCcccceecccCCccccccccccccCCCCCCCEEEEE
Q 042822 393 ELGKLTKLRLLDLTNCFHLKVIAA----NLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIA 468 (775)
Q Consensus 393 ~i~~l~~L~~L~l~~~~~l~~~p~----~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~ 468 (775)
....+++|++|++++|. ..+.. ..+.++++|++|++++|.....+ ...+..+++|+.|.+.
T Consensus 179 ~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l-------------~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 179 FPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKL-------------ATLLQRAPQLEELGTG 243 (594)
T ss_dssp SCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHH-------------HHHHHHCTTCSEEECS
T ss_pred HhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHH-------------HHHHhcCCcceEcccc
Confidence 33477899999999985 22222 22456799999999988433222 2556778899999876
Q ss_pred eeCCC-------CCCCcc-ccccccceEEEecCCCCCCccccccccccccccccccccccccceEEEeccCccc--cccc
Q 042822 469 VENDN-------ALPEGF-FVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNCKTI--CSRK 538 (775)
Q Consensus 469 ~~~~~-------~~~~~~-~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~ 538 (775)
.+... .++..+ .+++|+.+. ...... ..........+++|+.|+++++.... ....
T Consensus 244 ~~~~~~~~~~~~~l~~~l~~~~~L~~Ls----~~~~~~----------~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~ 309 (594)
T 2p1m_B 244 GYTAEVRPDVYSGLSVALSGCKELRCLS----GFWDAV----------PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKL 309 (594)
T ss_dssp BCCCCCCHHHHHHHHHHHHTCTTCCEEE----CCBTCC----------GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHH
T ss_pred cccCccchhhHHHHHHHHhcCCCccccc----CCcccc----------hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHH
Confidence 54321 111111 223344331 000000 00001111237889999998765221 1222
Q ss_pred ccccccceEEeecccCCcccccccccccccccCcEEEeecC--------CCccccccCCCcccCCcccccceeecccccc
Q 042822 539 LQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNN--------PDLLFIVDSREIVDCDAFPLLELLSLQNLIN 610 (775)
Q Consensus 539 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~--------~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~ 610 (775)
+..+++|++|++++| ..+.........+++|+.|++.+| ..+... ........+|+|+.|.+ +|..
T Consensus 310 ~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~---~l~~l~~~~~~L~~L~~-~~~~ 383 (594)
T 2p1m_B 310 LCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ---GLVSVSMGCPKLESVLY-FCRQ 383 (594)
T ss_dssp HTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH---HHHHHHHHCTTCCEEEE-EESC
T ss_pred HhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH---HHHHHHHhchhHHHHHH-hcCC
Confidence 347889999999887 222211112234788999998654 222211 00001124788888854 4555
Q ss_pred cccccccccCcccccCCCeEEec-----cCCCCCccccch----hhcCCCCccEEEEecccchHHHhhccCCCCcccCCC
Q 042822 611 LKTICVDRLSTESFAELRTMKVE-----NCDELSNIFVLS----TTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVADNS 681 (775)
Q Consensus 611 l~~~~~~~~~~~~~~~L~~L~l~-----~C~~L~~l~~~~----~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~~~~~~~ 681 (775)
+...... .-...+|+|++|++. +|..++..|... .+..+++|++|++.+ .+....
T Consensus 384 l~~~~~~-~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~------------- 447 (594)
T 2p1m_B 384 MTNAALI-TIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKV------------- 447 (594)
T ss_dssp CCHHHHH-HHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHH-------------
T ss_pred cCHHHHH-HHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHH-------------
Confidence 5433111 111247899999998 678888554321 356788999999965 333221
Q ss_pred CCCccc-cccccCeEecCCCC
Q 042822 682 NANEKI-EFAQIRYLSLGNLP 701 (775)
Q Consensus 682 ~~~~~~-~~~~L~~L~l~~c~ 701 (775)
...+. .+++|+.|+|++|.
T Consensus 448 -~~~l~~~~~~L~~L~L~~~~ 467 (594)
T 2p1m_B 448 -FEYIGTYAKKMEMLSVAFAG 467 (594)
T ss_dssp -HHHHHHHCTTCCEEEEESCC
T ss_pred -HHHHHHhchhccEeeccCCC
Confidence 11112 37889999998875
No 83
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=8.5e-19 Score=182.21 Aligned_cols=108 Identities=23% Similarity=0.357 Sum_probs=58.1
Q ss_pred CCCcccEEEecCCCCC-CCCccc--ccccCccEEEcCCCCCCC-ccccccC-----CcccEEEecCCCCcccc-hhhhcc
Q 042822 328 GMRELKVVDLTNMQLF-SLPSSI--DLLLNLRTLCLDHGTLGD-ITIIGEL-----KNLEILSLIGSDIVEFP-EELGKL 397 (775)
Q Consensus 328 ~l~~L~~L~l~~~~~~-~lp~~i--~~l~~L~~L~L~~~~l~~-p~~i~~l-----~~L~~L~l~~~~l~~lp-~~i~~l 397 (775)
++++|++|++++|.++ .+|..+ +.+++|++|++++|.+.. |..++.+ ++|++|++++|.++.+| ..++++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 4555666666666555 455544 555666666666665555 4444444 55666666666555444 455556
Q ss_pred CCCCEecccCCccccc--cchHHh--hccccccEEEcCCCccc
Q 042822 398 TKLRLLDLTNCFHLKV--IAANLI--ASFTRLEELYMSNCFVE 436 (775)
Q Consensus 398 ~~L~~L~l~~~~~l~~--~p~~~l--~~L~~L~~L~l~~~~~~ 436 (775)
++|++|++++|...+. +|.. + +++++|++|++++|.+.
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~-~~~~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISA-LCPLKFPTLQVLALRNAGME 214 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHH-SCTTSCTTCCEEECTTSCCC
T ss_pred CCCCEEECCCCCcCcchHHHHH-HHhccCCCCCEEECCCCcCc
Confidence 6666666655533322 1222 2 55556666666555543
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=2.6e-17 Score=163.89 Aligned_cols=138 Identities=20% Similarity=0.245 Sum_probs=93.2
Q ss_pred CCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCC-CCCCCc-ccccccCccEEEcCC-CCCCC-c
Q 042822 293 GGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQ-LFSLPS-SIDLLLNLRTLCLDH-GTLGD-I 368 (775)
Q Consensus 293 ~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~-~~~lp~-~i~~l~~L~~L~L~~-~~l~~-p 368 (775)
+..+|. -.++|++|++++|.+. .++...|.++++|++|++++|. ++.+|. .++++++|++|++++ |.++. +
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~---~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLR---TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCS---EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred ccccCC--CCCcccEEEEeCCcce---EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 556665 2336777777777665 5565556777777777777775 666654 567777777777776 66666 3
Q ss_pred -cccccCCcccEEEecCCCCcccchhhhccCCCC---EecccCCccccccchHHhhcccccc-EEEcCCCccc
Q 042822 369 -TIIGELKNLEILSLIGSDIVEFPEELGKLTKLR---LLDLTNCFHLKVIAANLIASFTRLE-ELYMSNCFVE 436 (775)
Q Consensus 369 -~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~---~L~l~~~~~l~~~p~~~l~~L~~L~-~L~l~~~~~~ 436 (775)
..++++++|++|++++|.++.+|. +..+++|+ +|++++|..++.+|...++++++|+ +|++++|.+.
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred HHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 456677777777777777777776 66666666 7777776456666665566777777 7777766654
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=4.8e-17 Score=165.36 Aligned_cols=174 Identities=24% Similarity=0.280 Sum_probs=121.3
Q ss_pred cccceeEEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcc-cccccCccE
Q 042822 279 ALKKCYAISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSS-IDLLLNLRT 357 (775)
Q Consensus 279 ~~~~~~~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~ 357 (775)
...+++.|.+.++.+..++....+++|++|++++|.+. .++ .+..+++|++|++++|.++.+|.. ++++++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~---~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLH---DIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCC---CCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCC---Cch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 45567777777777777666557778888888877765 332 246777888888888877766543 577778888
Q ss_pred EEcCCCCCCC-c-cccccCCcccEEEecCCCCcccchh-hhccCCCCEecccCCccccccchHHhhccccccEEEcCCCc
Q 042822 358 LCLDHGTLGD-I-TIIGELKNLEILSLIGSDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCF 434 (775)
Q Consensus 358 L~L~~~~l~~-p-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~ 434 (775)
|++++|.+.. + ..++++++|++|++++|.++.+|.. ++.+++|++|++++| .++.++...++.+++|++|++++|.
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCc
Confidence 8888887776 3 3367777888888888777766654 467778888888777 4556666556777778888877777
Q ss_pred ccceecccCCccccccccccccCCCCCCCEEEEEeeC
Q 042822 435 VEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVEN 471 (775)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~ 471 (775)
+....+ ..+..+++|+.|++++|.
T Consensus 193 l~~~~~-------------~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 193 LKSVPD-------------GVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CSCCCT-------------TTTTTCTTCCEEECCSSC
T ss_pred CCccCH-------------HHHhCCcCCCEEEccCCC
Confidence 663222 445667777777776654
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=4.3e-17 Score=162.34 Aligned_cols=197 Identities=14% Similarity=0.215 Sum_probs=162.3
Q ss_pred ccCCCCcccccceeEEEEEcCCCCCCCCC-C-CCCCccEEEcccCC-CCCccccChhhhhCCCcccEEEecC-CCCCCCC
Q 042822 271 VWEWPDKDALKKCYAISWIDSSGGELPEG-L-ECPQLELLLLSSKH-SSVDVNIPRSFFTGMRELKVVDLTN-MQLFSLP 346 (775)
Q Consensus 271 ~~~~~~~~~~~~~~~l~l~~~~~~~lp~~-~-~~~~Lr~L~l~~~~-~~~~~~l~~~~~~~l~~L~~L~l~~-~~~~~lp 346 (775)
...+|. ...+++.|++.+|.+..+|.. + .+++|++|++++|. .. .++...|.++++|++|++++ |.++.+|
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~---~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ---QLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC---EECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc---eeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 445555 667899999999999998873 3 89999999999996 65 67777789999999999999 9999876
Q ss_pred -cccccccCccEEEcCCCCCCCccccccCCccc---EEEecCC-CCcccchh-hhccCCCC-EecccCCccccccchHHh
Q 042822 347 -SSIDLLLNLRTLCLDHGTLGDITIIGELKNLE---ILSLIGS-DIVEFPEE-LGKLTKLR-LLDLTNCFHLKVIAANLI 419 (775)
Q Consensus 347 -~~i~~l~~L~~L~L~~~~l~~p~~i~~l~~L~---~L~l~~~-~l~~lp~~-i~~l~~L~-~L~l~~~~~l~~~p~~~l 419 (775)
..+.++++|++|++++|.++..+.++.+.+|+ +|++++| .++.+|.. +..+++|+ +|++++| .++.+|...+
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~ 176 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAF 176 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTT
T ss_pred HHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhc
Confidence 56899999999999999998844488888888 9999999 99988865 88999999 9999998 5678888755
Q ss_pred hccccccEEEcCCCc-ccceecccCCccccccccccccCCC-CCCCEEEEEeeCCCCCCCccccccccceE
Q 042822 420 ASFTRLEELYMSNCF-VEWKVEDEGSSSKRSKASLDELMPL-PRLTTLEIAVENDNALPEGFFVRELERFK 488 (775)
Q Consensus 420 ~~L~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~l~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~ 488 (775)
.. ++|++|++++|. +....+ ..+..+ ++|+.|++++|.+..+|.. .+++|+.|.
T Consensus 177 ~~-~~L~~L~L~~n~~l~~i~~-------------~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~ 232 (239)
T 2xwt_C 177 NG-TKLDAVYLNKNKYLTVIDK-------------DAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELI 232 (239)
T ss_dssp TT-CEEEEEECTTCTTCCEECT-------------TTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEE
T ss_pred CC-CCCCEEEcCCCCCcccCCH-------------HHhhccccCCcEEECCCCccccCChh-HhccCceee
Confidence 55 899999999995 652222 557778 8999999999988887764 344444443
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.70 E-value=1.7e-16 Score=159.16 Aligned_cols=175 Identities=25% Similarity=0.313 Sum_probs=147.1
Q ss_pred ceeEEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCC-cccccccCccEEEc
Q 042822 282 KCYAISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLP-SSIDLLLNLRTLCL 360 (775)
Q Consensus 282 ~~~~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~L 360 (775)
..+++++.++.+..+|..+. ++++.|++++|.+. .++...|.++++|++|++++|.+..++ ..+..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLA---TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCC---CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcC---ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45678888888888887664 68999999999887 566666789999999999999999765 45899999999999
Q ss_pred CCCCCCC-c-cccccCCcccEEEecCCCCcccchh-hhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccc
Q 042822 361 DHGTLGD-I-TIIGELKNLEILSLIGSDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEW 437 (775)
Q Consensus 361 ~~~~l~~-p-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~ 437 (775)
++|.++. + ..++.+++|++|++++|.++.+|.. +..+++|++|++++| .++.+|...++++++|++|++++|.+..
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 9999988 4 5678999999999999999988876 588999999999998 6778887668999999999999998873
Q ss_pred eecccCCccccccccccccCCCCCCCEEEEEeeCCCC
Q 042822 438 KVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNA 474 (775)
Q Consensus 438 ~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~ 474 (775)
..+ ..+..+++|+.|++++|....
T Consensus 170 ~~~-------------~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 170 VPH-------------GAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCT-------------TTTTTCTTCCEEECCSCCBCT
T ss_pred cCH-------------HHHhCCCCCCEEEeeCCceeC
Confidence 332 567888999999999887654
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=1e-16 Score=162.83 Aligned_cols=157 Identities=20% Similarity=0.332 Sum_probs=119.1
Q ss_pred CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEEEcCCCCCCC-c-cccccCCccc
Q 042822 301 ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGD-I-TIIGELKNLE 378 (775)
Q Consensus 301 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~-p-~~i~~l~~L~ 378 (775)
.+++|+.|++.+|... .++. +..+++|++|++++|.+..++ .++.+++|++|++++|.++. + ..++++++|+
T Consensus 39 ~l~~L~~L~l~~~~i~---~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIK---SVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHTTCCEEECTTSCCC---CCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccceeeeeeCCCCcc---cccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 6778888888888765 3432 477888888888888888764 67888888888888888877 3 3478888888
Q ss_pred EEEecCCCCcccchh-hhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccceecccCCccccccccccccC
Q 042822 379 ILSLIGSDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELM 457 (775)
Q Consensus 379 ~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 457 (775)
+|++++|.++.+|.. ++.+++|++|++++| .++.++...++++++|++|++++|.+....+ ..++
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------~~~~ 178 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLPE-------------GVFD 178 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------------TTTT
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCccCH-------------HHhc
Confidence 888888888877654 678888888888887 5667776657888888888888887763222 4467
Q ss_pred CCCCCCEEEEEeeCCCCCCC
Q 042822 458 PLPRLTTLEIAVENDNALPE 477 (775)
Q Consensus 458 ~l~~L~~L~l~~~~~~~~~~ 477 (775)
.+++|+.|++++|.+..++.
T Consensus 179 ~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 179 KLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp TCTTCCEEECCSSCCSCCCT
T ss_pred CCccCCEEECCCCcCCccCH
Confidence 77888888888776665544
No 89
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=1.7e-17 Score=183.02 Aligned_cols=232 Identities=17% Similarity=0.116 Sum_probs=179.8
Q ss_pred ccceeEEEEEcCCCCCCCC-CC-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccE
Q 042822 280 LKKCYAISWIDSSGGELPE-GL-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRT 357 (775)
Q Consensus 280 ~~~~~~l~l~~~~~~~lp~-~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~ 357 (775)
+++++.|++++|.+..+++ .+ .+++|++|++++|.+.. +++ +..+++|++|++++|.++.+|. .++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~ 103 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE---TLD--LESLSTLRTLDLNNNYVQELLV----GPSIET 103 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEE---EEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCC---Ccc--cccCCCCCEEEecCCcCCCCCC----CCCcCE
Confidence 4589999999999988874 34 89999999999998873 333 6899999999999999987664 389999
Q ss_pred EEcCCCCCCC-ccccccCCcccEEEecCCCCccc-chhhhccCCCCEecccCCccccccchHHhh-ccccccEEEcCCCc
Q 042822 358 LCLDHGTLGD-ITIIGELKNLEILSLIGSDIVEF-PEELGKLTKLRLLDLTNCFHLKVIAANLIA-SFTRLEELYMSNCF 434 (775)
Q Consensus 358 L~L~~~~l~~-p~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~p~~~l~-~L~~L~~L~l~~~~ 434 (775)
|++++|.+.. +. ..+++|++|++++|.++.+ |..++++++|++|++++|...+..|.. +. .+++|++|++++|.
T Consensus 104 L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 104 LHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE-LAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGG-GGGGTTTCCEEECTTSC
T ss_pred EECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHH-HhhhCCcccEEecCCCc
Confidence 9999999988 43 2468999999999999966 557899999999999999554445655 54 89999999999998
Q ss_pred ccceecccCCccccccccccccCCCCCCCEEEEEeeCCCCCCCccccccccceEEEecCCCCCCcccccccccccccccc
Q 042822 435 VEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHF 514 (775)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~~~ 514 (775)
+... .....+++|+.|++++|.+..+|..+
T Consensus 181 l~~~---------------~~~~~l~~L~~L~Ls~N~l~~~~~~~----------------------------------- 210 (487)
T 3oja_A 181 IYDV---------------KGQVVFAKLKTLDLSSNKLAFMGPEF----------------------------------- 210 (487)
T ss_dssp CCEE---------------ECCCCCTTCCEEECCSSCCCEECGGG-----------------------------------
T ss_pred cccc---------------cccccCCCCCEEECCCCCCCCCCHhH-----------------------------------
Confidence 8733 23446899999999998877665521
Q ss_pred ccccccccceEEEeccCcccccccccccccceEEeecccCCc-ccccccccccccccCcEEEee
Q 042822 515 LILDHQSLRMLKLKLNCKTICSRKLQGIRKVEYLCLDKFQGV-KNILFELDTQGFSQLKHLLVQ 577 (775)
Q Consensus 515 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~l~~L~~L~l~ 577 (775)
..+++|+.|+++++.....|.++..+++|+.|++++|... ..++.. ...++.|+.+.+.
T Consensus 211 --~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~--~~~l~~L~~l~~~ 270 (487)
T 3oja_A 211 --QSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF--FSKNQRVQTVAKQ 270 (487)
T ss_dssp --GGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHH--HTTCHHHHHHHHH
T ss_pred --cCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHH--HHhCCCCcEEecc
Confidence 1167777778877776667777778888888888887654 222221 2346666666664
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.68 E-value=5e-16 Score=159.22 Aligned_cols=173 Identities=26% Similarity=0.329 Sum_probs=148.9
Q ss_pred cccceeEEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEE
Q 042822 279 ALKKCYAISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTL 358 (775)
Q Consensus 279 ~~~~~~~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 358 (775)
.+.+++.|++.++.+..++....+++|++|++++|.+. .++. +..+++|++|++++|.++.+|. ++.+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~---~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT---DIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC---CCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccC---CCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence 45678999999999988877558999999999999887 4554 6899999999999999998765 8999999999
Q ss_pred EcCCCCCCCccccccCCcccEEEecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccce
Q 042822 359 CLDHGTLGDITIIGELKNLEILSLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWK 438 (775)
Q Consensus 359 ~L~~~~l~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~ 438 (775)
++++|.+..++.++.+++|++|++++|.++.+ ..++.+++|++|++++| .+..++. ++.+++|++|++++|.+..
T Consensus 118 ~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~L~~N~i~~- 192 (291)
T 1h6t_A 118 SLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHISD- 192 (291)
T ss_dssp ECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCB-
T ss_pred ECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCC-ccccchh--hcCCCccCEEECCCCcCCC-
Confidence 99999998888899999999999999999988 57899999999999998 5677766 8899999999999998761
Q ss_pred ecccCCccccccccccccCCCCCCCEEEEEeeCCCCCC
Q 042822 439 VEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALP 476 (775)
Q Consensus 439 ~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~ 476 (775)
+..+..+++|+.|++++|.....|
T Consensus 193 --------------l~~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 193 --------------LRALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp --------------CGGGTTCTTCSEEEEEEEEEECCC
T ss_pred --------------ChhhccCCCCCEEECcCCcccCCc
Confidence 245888999999999998765544
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.65 E-value=3.3e-16 Score=162.56 Aligned_cols=184 Identities=16% Similarity=0.106 Sum_probs=119.5
Q ss_pred ceeEEEEEcCCCCC-----CCCCCCCCCccEEEcccCCCCCccccChhhh-hCCCcccEEEecCCCCCCC-C----cccc
Q 042822 282 KCYAISWIDSSGGE-----LPEGLECPQLELLLLSSKHSSVDVNIPRSFF-TGMRELKVVDLTNMQLFSL-P----SSID 350 (775)
Q Consensus 282 ~~~~l~l~~~~~~~-----lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~-~~l~~L~~L~l~~~~~~~l-p----~~i~ 350 (775)
+++++.+.+..+.. +.....+++|+.|++++|.+.. ..|..++ ..+++|++|++++|.+... | ..+.
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITG--TMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBS--CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEecc--chhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 35666665544421 1112245568888888887664 4454443 6788888888888887742 2 2345
Q ss_pred cccCccEEEcCCCCCCC--ccccccCCcccEEEecCCCCcc---cchh--hhccCCCCEecccCCccccccchH---Hhh
Q 042822 351 LLLNLRTLCLDHGTLGD--ITIIGELKNLEILSLIGSDIVE---FPEE--LGKLTKLRLLDLTNCFHLKVIAAN---LIA 420 (775)
Q Consensus 351 ~l~~L~~L~L~~~~l~~--p~~i~~l~~L~~L~l~~~~l~~---lp~~--i~~l~~L~~L~l~~~~~l~~~p~~---~l~ 420 (775)
.+++|++|++++|.+.. +..++++++|++|++++|.+.. +|.. ++.+++|++|++++| .++.++.. .++
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHh
Confidence 67888888888888776 4567788888888888887653 3322 367888888888887 45544432 356
Q ss_pred ccccccEEEcCCCcccceecccCCccccccccccccCCCCCCCEEEEEeeCCCCCCCc
Q 042822 421 SFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPEG 478 (775)
Q Consensus 421 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~ 478 (775)
.+++|++|++++|.+....| ..+..+..+++|++|++++|.+..+|..
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p----------~~~~~~~~~~~L~~L~Ls~N~l~~lp~~ 269 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVN----------PSAPRCMWSSALNSLNLSFAGLEQVPKG 269 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCC----------SCCSSCCCCTTCCCEECCSSCCCSCCSC
T ss_pred cCCCCCEEECCCCCCCccch----------hhHHhccCcCcCCEEECCCCCCCchhhh
Confidence 77888888888887764433 1112222336888888888877776664
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.65 E-value=3.6e-15 Score=157.50 Aligned_cols=102 Identities=18% Similarity=0.222 Sum_probs=65.9
Q ss_pred cEEEecCCCCCCCCcccccccCccEEEcCCCCCCC-cc-ccccCCcccEEEecCCCCc-ccch-hhhccCCCCEecccCC
Q 042822 333 KVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGD-IT-IIGELKNLEILSLIGSDIV-EFPE-ELGKLTKLRLLDLTNC 408 (775)
Q Consensus 333 ~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~-p~-~i~~l~~L~~L~l~~~~l~-~lp~-~i~~l~~L~~L~l~~~ 408 (775)
++++.++++++++|..+ ..++++|+|++|.|+. |+ .++++++|++|+|++|.+. .+|. .+.++++|+++...++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 56778888888888766 3567777777777776 33 4677777777777777654 4554 3566666665444443
Q ss_pred ccccccchHHhhccccccEEEcCCCccc
Q 042822 409 FHLKVIAANLIASFTRLEELYMSNCFVE 436 (775)
Q Consensus 409 ~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 436 (775)
..+..+++++++.+++|++|++++|.+.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~ 117 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIK 117 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCS
T ss_pred CcccccCchhhhhccccccccccccccc
Confidence 4566665555666666666666666554
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.64 E-value=3.4e-15 Score=149.64 Aligned_cols=166 Identities=20% Similarity=0.298 Sum_probs=141.7
Q ss_pred eecCCccCCCCcccccceeEEEEEcCCCCCCCCC-C-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCC
Q 042822 266 VRNGDVWEWPDKDALKKCYAISWIDSSGGELPEG-L-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLF 343 (775)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~lp~~-~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~ 343 (775)
..+..+..+|. .....++.|++.+|.+..++.. + .+++|++|++++|.+. .++...|..+++|++|++++|.++
T Consensus 21 ~~~~~l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~ 96 (251)
T 3m19_A 21 CQGKSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ---TLSAGVFDDLTELGTLGLANNQLA 96 (251)
T ss_dssp CTTCCCSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC---CCCTTTTTTCTTCCEEECTTSCCC
T ss_pred cCCCCccccCC-CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC---ccCHhHhccCCcCCEEECCCCccc
Confidence 34444555554 3457899999999999887764 3 8999999999999887 566677799999999999999999
Q ss_pred CCC-cccccccCccEEEcCCCCCCC-cc-ccccCCcccEEEecCCCCcccch-hhhccCCCCEecccCCccccccchHHh
Q 042822 344 SLP-SSIDLLLNLRTLCLDHGTLGD-IT-IIGELKNLEILSLIGSDIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAANLI 419 (775)
Q Consensus 344 ~lp-~~i~~l~~L~~L~L~~~~l~~-p~-~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~l 419 (775)
.+| ..++.+++|++|++++|.++. ++ .++++.+|++|++++|.++.+|. .++.+++|++|++++| .+..++...+
T Consensus 97 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~ 175 (251)
T 3m19_A 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAF 175 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTT
T ss_pred ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHH
Confidence 876 457899999999999999998 44 47899999999999999998887 5899999999999998 6777877669
Q ss_pred hccccccEEEcCCCccc
Q 042822 420 ASFTRLEELYMSNCFVE 436 (775)
Q Consensus 420 ~~L~~L~~L~l~~~~~~ 436 (775)
..+++|++|++++|.+.
T Consensus 176 ~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 176 DRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTCTTCCEEECCSCCBC
T ss_pred hCCCCCCEEEeeCCcee
Confidence 99999999999999876
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.63 E-value=1.8e-16 Score=166.94 Aligned_cols=148 Identities=18% Similarity=0.175 Sum_probs=107.5
Q ss_pred CccEEEcccCCCCCccccChhhhhCC--CcccEEEecCCCCCCCCcccccccCccEEEcCCCCCCC---ccccccCCccc
Q 042822 304 QLELLLLSSKHSSVDVNIPRSFFTGM--RELKVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGD---ITIIGELKNLE 378 (775)
Q Consensus 304 ~Lr~L~l~~~~~~~~~~l~~~~~~~l--~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~---p~~i~~l~~L~ 378 (775)
.++.++++++... +..+..+ +.+++|++++|.+...+..+..+++|++|++++|.+.. +..++++++|+
T Consensus 48 ~~~~l~l~~~~~~------~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 48 LWQTLDLTGKNLH------PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TSSEEECTTCBCC------HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hheeeccccccCC------HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 4778888877443 3445666 78899999999888777677788889999999888764 45678888888
Q ss_pred EEEecCCCCc-ccchhhhccCCCCEecccCCccccc--cchHHhhccccccEEEcCCC-cccceecccCCcccccccccc
Q 042822 379 ILSLIGSDIV-EFPEELGKLTKLRLLDLTNCFHLKV--IAANLIASFTRLEELYMSNC-FVEWKVEDEGSSSKRSKASLD 454 (775)
Q Consensus 379 ~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~--~p~~~l~~L~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~l~ 454 (775)
+|++++|.++ ..|..++++++|++|++++|..++. ++.. ++++++|++|++++| .+... ....
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~------------~~~~ 188 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTEK------------HVQV 188 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCHH------------HHHH
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcChH------------HHHH
Confidence 8888888877 6777888888888888888854543 4544 778888888888888 55421 0123
Q ss_pred ccCCCC-CCCEEEEEee
Q 042822 455 ELMPLP-RLTTLEIAVE 470 (775)
Q Consensus 455 ~l~~l~-~L~~L~l~~~ 470 (775)
.+..++ +|++|+++++
T Consensus 189 ~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 189 AVAHVSETITQLNLSGY 205 (336)
T ss_dssp HHHHSCTTCCEEECCSC
T ss_pred HHHhcccCCCEEEeCCC
Confidence 455566 6666666544
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=2.9e-16 Score=165.27 Aligned_cols=146 Identities=16% Similarity=0.195 Sum_probs=105.1
Q ss_pred ceeEEEEEcCCCCCCCCCC-CC--CCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCC--CCcccccccCcc
Q 042822 282 KCYAISWIDSSGGELPEGL-EC--PQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFS--LPSSIDLLLNLR 356 (775)
Q Consensus 282 ~~~~l~l~~~~~~~lp~~~-~~--~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~--lp~~i~~l~~L~ 356 (775)
..+++++.++.+. +..+ .+ ++++.|++.+|.... .+..+ ..+++|++|++++|.+.. +|..++.+++|+
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~---~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQ---PLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECS---CCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccc---cchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 3566777655443 2111 33 778888888877653 33333 468888888888888772 677788888888
Q ss_pred EEEcCCCCCCC--ccccccCCcccEEEecCC-CCc--ccchhhhccCCCCEecccCCccccc--cchHHhhccc-cccEE
Q 042822 357 TLCLDHGTLGD--ITIIGELKNLEILSLIGS-DIV--EFPEELGKLTKLRLLDLTNCFHLKV--IAANLIASFT-RLEEL 428 (775)
Q Consensus 357 ~L~L~~~~l~~--p~~i~~l~~L~~L~l~~~-~l~--~lp~~i~~l~~L~~L~l~~~~~l~~--~p~~~l~~L~-~L~~L 428 (775)
+|++++|.+.. +..++++++|++|++++| .++ .+|..+.++++|++|++++|..++. ++.. ++.++ +|++|
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~L 200 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSETITQL 200 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-HHHSCTTCCEE
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-HHhcccCCCEE
Confidence 88888888775 667888888888888888 677 4777788888888888888844443 4444 77888 88888
Q ss_pred EcCCCc
Q 042822 429 YMSNCF 434 (775)
Q Consensus 429 ~l~~~~ 434 (775)
++++|.
T Consensus 201 ~l~~~~ 206 (336)
T 2ast_B 201 NLSGYR 206 (336)
T ss_dssp ECCSCG
T ss_pred EeCCCc
Confidence 888874
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.62 E-value=3.4e-15 Score=152.98 Aligned_cols=166 Identities=20% Similarity=0.266 Sum_probs=137.4
Q ss_pred CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEEEcCCCCCCCccccccCCcccEE
Q 042822 301 ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGDITIIGELKNLEIL 380 (775)
Q Consensus 301 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~p~~i~~l~~L~~L 380 (775)
.+++|+.|++++|.+. .++. +..+++|++|++++|.++.++. ++++++|++|++++|.++.++.++.+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~---~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIK---SVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCC---CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcc---cChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEE
Confidence 6788999999999876 4543 5889999999999999998887 99999999999999999997789999999999
Q ss_pred EecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccceecccCCccccccccccccCCCC
Q 042822 381 SLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLP 460 (775)
Q Consensus 381 ~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~ 460 (775)
++++|.++.++ .+..+++|++|++++| .++.++ . ++++++|++|++++|.+.. +..+..++
T Consensus 118 ~L~~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~-~-l~~l~~L~~L~L~~N~l~~---------------~~~l~~l~ 178 (291)
T 1h6t_A 118 SLEHNGISDIN-GLVHLPQLESLYLGNN-KITDIT-V-LSRLTKLDTLSLEDNQISD---------------IVPLAGLT 178 (291)
T ss_dssp ECTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCCG-G-GGGCTTCSEEECCSSCCCC---------------CGGGTTCT
T ss_pred ECCCCcCCCCh-hhcCCCCCCEEEccCC-cCCcch-h-hccCCCCCEEEccCCcccc---------------chhhcCCC
Confidence 99999999885 6899999999999998 566674 3 8999999999999998762 12278899
Q ss_pred CCCEEEEEeeCCCCCCCccccccccceEEEe
Q 042822 461 RLTTLEIAVENDNALPEGFFVRELERFKILI 491 (775)
Q Consensus 461 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~ 491 (775)
+|+.|++++|.+..++....+++|+.|++..
T Consensus 179 ~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 179 KLQNLYLSKNHISDLRALAGLKNLDVLELFS 209 (291)
T ss_dssp TCCEEECCSSCCCBCGGGTTCTTCSEEEEEE
T ss_pred ccCEEECCCCcCCCChhhccCCCCCEEECcC
Confidence 9999999998877665422334444444443
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.61 E-value=4.4e-15 Score=156.78 Aligned_cols=148 Identities=16% Similarity=0.212 Sum_probs=95.5
Q ss_pred EEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCC-CCCc-ccccccCccE-EEcC
Q 042822 285 AISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLF-SLPS-SIDLLLNLRT-LCLD 361 (775)
Q Consensus 285 ~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~-~lp~-~i~~l~~L~~-L~L~ 361 (775)
.+...++++..+|..+ .+++++|++++|.+. .+|.+.|.++++|++|+|++|.+. .+|. .+.++++|+. +.+.
T Consensus 13 ~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~---~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL-PRNAIELRFVLTKLR---VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EEEEESTTCCSCCTTC-CTTCSEEEEESCCCS---EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred EEEecCCCCCccCcCc-CCCCCEEEccCCcCC---CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 4555666677777655 356777777777766 577666677777777777777765 3443 4566766654 4455
Q ss_pred CCCCCC--ccccccCCcccEEEecCCCCcccch-hhhccCCCCEecccCCccccccchHHhhccc-cccEEEcCCCccc
Q 042822 362 HGTLGD--ITIIGELKNLEILSLIGSDIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAANLIASFT-RLEELYMSNCFVE 436 (775)
Q Consensus 362 ~~~l~~--p~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~-~L~~L~l~~~~~~ 436 (775)
+|.+.. |..++.+++|++|++++|.++.+|. .+....++..|++.++..+..++...+..+. .+++|++++|.+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 566665 3456777777777777777776654 3445556667777666566666665455543 4666777666554
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.60 E-value=3.3e-15 Score=167.90 Aligned_cols=175 Identities=26% Similarity=0.329 Sum_probs=150.8
Q ss_pred ccccceeEEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccE
Q 042822 278 DALKKCYAISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRT 357 (775)
Q Consensus 278 ~~~~~~~~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~ 357 (775)
..+.+++.|++.++.+..++....+++|+.|++++|.+. .++. +..+++|+.|+|++|.+..+| .++.+++|++
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~---~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT---DIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCC---CCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCC---CChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCE
Confidence 345678889998899888886568999999999999887 4554 689999999999999999877 6899999999
Q ss_pred EEcCCCCCCCccccccCCcccEEEecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccc
Q 042822 358 LCLDHGTLGDITIIGELKNLEILSLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEW 437 (775)
Q Consensus 358 L~L~~~~l~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~ 437 (775)
|+|++|.+..++.++.+++|+.|+|++|.++.+ ..++.+++|++|++++| .+..+++ ++.+++|++|++++|.+..
T Consensus 114 L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 114 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp EECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred EEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCC-cCCCchh--hccCCCCCEEECcCCCCCC
Confidence 999999999988899999999999999999988 57899999999999998 5666665 8899999999999998761
Q ss_pred eecccCCccccccccccccCCCCCCCEEEEEeeCCCCCCC
Q 042822 438 KVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPE 477 (775)
Q Consensus 438 ~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~ 477 (775)
+..+..+++|+.|++++|.+...|.
T Consensus 190 ---------------l~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 190 ---------------LRALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp ---------------CGGGTTCTTCSEEECCSEEEECCCC
T ss_pred ---------------ChHHccCCCCCEEEccCCcCcCCcc
Confidence 2468889999999999887655443
No 99
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.60 E-value=6.9e-15 Score=144.95 Aligned_cols=149 Identities=22% Similarity=0.322 Sum_probs=125.1
Q ss_pred eeEEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcc-cccccCccEEEcC
Q 042822 283 CYAISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSS-IDLLLNLRTLCLD 361 (775)
Q Consensus 283 ~~~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~L~ 361 (775)
.+.++..++.+..+|..+. ++|++|++++|.+. .++...|..+++|++|++++|.+..+|.. ++.+++|++|+++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQIT---KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcCccCCCCC-CCCCEEEcCCCccC---ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 3457777777888887653 88999999999887 45555668999999999999999988754 6889999999999
Q ss_pred CCCCCC-cc-ccccCCcccEEEecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCccc
Q 042822 362 HGTLGD-IT-IIGELKNLEILSLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVE 436 (775)
Q Consensus 362 ~~~l~~-p~-~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 436 (775)
+|.++. ++ .++.+.+|++|++++|.++.+|..+..+++|++|++++| .+..++...+..+++|++|++++|.+.
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 999888 43 478899999999999999999999999999999999998 677787766888999999999988765
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.60 E-value=4.2e-15 Score=142.94 Aligned_cols=147 Identities=18% Similarity=0.241 Sum_probs=78.6
Q ss_pred ccceeEEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCC-CCcccccccCccEE
Q 042822 280 LKKCYAISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFS-LPSSIDLLLNLRTL 358 (775)
Q Consensus 280 ~~~~~~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L 358 (775)
+.++++|++.++.+..+|....+++|++|++++|... .++ .+..+++|++|++++|.++. .|..++.+++|++|
T Consensus 43 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~---~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT---NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCS---CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCC---cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 4456666666666665553335556666666655332 221 23555566666666665552 45555555556666
Q ss_pred EcCCCCCCC--ccccccCCcccEEEecCCC-CcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcc
Q 042822 359 CLDHGTLGD--ITIIGELKNLEILSLIGSD-IVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFV 435 (775)
Q Consensus 359 ~L~~~~l~~--p~~i~~l~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 435 (775)
++++|.+.. |..++++++|++|++++|. ++.+| .+..+++|++|++++| .+..++ . +..+++|++|++++|.+
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~-~-l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYR-G-IEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCT-T-GGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChH-H-hccCCCCCEEEeeCccc
Confidence 665555554 4455555555555555554 55554 4555555555555555 344444 2 55555555555555543
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.59 E-value=3.4e-15 Score=145.04 Aligned_cols=168 Identities=21% Similarity=0.340 Sum_probs=128.1
Q ss_pred EEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcc-cccccCccEEEcCCC
Q 042822 285 AISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSS-IDLLLNLRTLCLDHG 363 (775)
Q Consensus 285 ~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~L~~~ 363 (775)
.+...++.+..+|..+ .++|++|++++|.+. .++...|..+++|++|++++|.++.+|.. ++.+++|++|++++|
T Consensus 11 ~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI-PAQTTYLDLETNSLK---SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp EEECCSSCCSSCCSCC-CTTCSEEECCSSCCC---CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEecCCCccCCCCCC-CCCCcEEEcCCCccC---cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 4555566667777544 458899999988876 56777778889999999999998877654 578899999999999
Q ss_pred CCCC-cc-ccccCCcccEEEecCCCCcccchh-hhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccceec
Q 042822 364 TLGD-IT-IIGELKNLEILSLIGSDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKVE 440 (775)
Q Consensus 364 ~l~~-p~-~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~ 440 (775)
.++. ++ .++++++|++|++++|.++.+|.. +.++++|++|++++| .++.++...++++++|++|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~---- 161 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWD---- 161 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCee----
Confidence 8887 43 468889999999999988887765 688899999999887 566777766788899999999888654
Q ss_pred ccCCccccccccccccCCCCCCCEEEEEeeCCC-CCCC
Q 042822 441 DEGSSSKRSKASLDELMPLPRLTTLEIAVENDN-ALPE 477 (775)
Q Consensus 441 ~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~-~~~~ 477 (775)
+.+++|+.|.+..+... .+|.
T Consensus 162 ----------------~~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 162 ----------------CTCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp ----------------CCTTTTHHHHHHHHHCTTTBBC
T ss_pred ----------------cCCCCHHHHHHHHHhCCceeec
Confidence 34456777766655433 3443
No 102
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.59 E-value=1.8e-16 Score=170.17 Aligned_cols=39 Identities=21% Similarity=0.172 Sum_probs=18.0
Q ss_pred hCCCcccEEEecCCCCCC-----CCcccccccCccEEEcCCCCC
Q 042822 327 TGMRELKVVDLTNMQLFS-----LPSSIDLLLNLRTLCLDHGTL 365 (775)
Q Consensus 327 ~~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~L~~~~l 365 (775)
..+++|++|++++|.+.. +|..+..+++|++|++++|.+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 344444444444444443 334444444444444444444
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=8.6e-15 Score=140.73 Aligned_cols=151 Identities=17% Similarity=0.196 Sum_probs=130.4
Q ss_pred CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEEEcCCCCCCC--ccccccCCccc
Q 042822 301 ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGD--ITIIGELKNLE 378 (775)
Q Consensus 301 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~--p~~i~~l~~L~ 378 (775)
.+++|+.|++++|.+. .+| . +..+++|++|++++|.+..++ .++.+++|++|++++|.+.. +..++++++|+
T Consensus 42 ~l~~L~~L~l~~n~i~---~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 42 QMNSLTYITLANINVT---DLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHTCCEEEEESSCCS---CCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hcCCccEEeccCCCcc---ChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 6788999999999887 566 3 589999999999999877664 78999999999999999986 88899999999
Q ss_pred EEEecCCCCc-ccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccceecccCCccccccccccccC
Q 042822 379 ILSLIGSDIV-EFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELM 457 (775)
Q Consensus 379 ~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 457 (775)
+|++++|.++ ..|..++.+++|++|++++|..++.+|. ++.+++|++|++++|.+.. +..+.
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~---------------~~~l~ 178 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD---------------YRGIE 178 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC---------------CTTGG
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC---------------hHHhc
Confidence 9999999998 5788899999999999999965888874 8999999999999998761 23688
Q ss_pred CCCCCCEEEEEeeCCCC
Q 042822 458 PLPRLTTLEIAVENDNA 474 (775)
Q Consensus 458 ~l~~L~~L~l~~~~~~~ 474 (775)
.+++|+.|++++|.++.
T Consensus 179 ~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 179 DFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp GCSSCCEEEECBC----
T ss_pred cCCCCCEEEeeCcccCC
Confidence 89999999999987654
No 104
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=6.7e-15 Score=152.65 Aligned_cols=193 Identities=14% Similarity=0.089 Sum_probs=146.2
Q ss_pred cceeEEEEEcCCCCC-CCCC---CCCCCccEEEcccCCCCCccc-cChhhhhCCCcccEEEecCCCCCCCC-cccccccC
Q 042822 281 KKCYAISWIDSSGGE-LPEG---LECPQLELLLLSSKHSSVDVN-IPRSFFTGMRELKVVDLTNMQLFSLP-SSIDLLLN 354 (775)
Q Consensus 281 ~~~~~l~l~~~~~~~-lp~~---~~~~~Lr~L~l~~~~~~~~~~-l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~ 354 (775)
.++++|++.+|.+.. .|.. ..+++|++|++++|.+..... ++...+..+++|++|++++|.+..+| ..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 458999999998754 4444 468999999999998774111 12233357999999999999999665 68899999
Q ss_pred ccEEEcCCCCCCC----c--cccccCCcccEEEecCCCCcccchh----hhccCCCCEecccCCccccccchHHhhcc--
Q 042822 355 LRTLCLDHGTLGD----I--TIIGELKNLEILSLIGSDIVEFPEE----LGKLTKLRLLDLTNCFHLKVIAANLIASF-- 422 (775)
Q Consensus 355 L~~L~L~~~~l~~----p--~~i~~l~~L~~L~l~~~~l~~lp~~----i~~l~~L~~L~l~~~~~l~~~p~~~l~~L-- 422 (775)
|++|++++|.+.. + ..++++++|++|++++|.++.+|.. ++.+++|++|++++|......|.. ++.+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-APRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HHhccC
Confidence 9999999998653 1 2347899999999999999877763 578899999999999544444765 6666
Q ss_pred -ccccEEEcCCCcccceecccCCccccccccccccCCCCCCCEEEEEeeCCCCCCCccccccccceEEE
Q 042822 423 -TRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKIL 490 (775)
Q Consensus 423 -~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 490 (775)
++|++|++++|.+. .+| ..+. ++|+.|++++|.+..+|....+++|+.|++.
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp-------------~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~ 302 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVP-------------KGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLD 302 (310)
T ss_dssp CTTCCCEECCSSCCC-SCC-------------SCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECS
T ss_pred cCcCCEEECCCCCCC-chh-------------hhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECc
Confidence 69999999999887 344 3332 7999999999988876553233444444443
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.58 E-value=3e-15 Score=150.82 Aligned_cols=170 Identities=18% Similarity=0.192 Sum_probs=134.6
Q ss_pred cceeEEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEEEc
Q 042822 281 KKCYAISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTLCL 360 (775)
Q Consensus 281 ~~~~~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L 360 (775)
.++..+.+..+.+..++....+++|++|++++|.+. .++ . +..+++|++|++++|.++.+|. ++.+++|++|++
T Consensus 19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~---~l~-~-l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ---SLA-G-MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCC---CCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcc---cch-H-HhhCCCCCEEECCCCccCCChh-hccCCCCCEEEC
Confidence 334444555566666664447888999999998776 565 3 5789999999999999998887 889999999999
Q ss_pred CCCCCCCccccccCCcccEEEecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccceec
Q 042822 361 DHGTLGDITIIGELKNLEILSLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKVE 440 (775)
Q Consensus 361 ~~~~l~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~ 440 (775)
++|.++..+.+.. .+|++|++++|.++.+| .+.++++|++|++++| .++.++. ++.+++|++|++++|.+..
T Consensus 93 ~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~L~~L~L~~N~i~~--- 164 (263)
T 1xeu_A 93 NRNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIVM--LGFLSKLEVLDLHGNEITN--- 164 (263)
T ss_dssp CSSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCGG--GGGCTTCCEEECTTSCCCB---
T ss_pred CCCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCChH--HccCCCCCEEECCCCcCcc---
Confidence 9999888444545 89999999999998886 5889999999999998 5777763 8899999999999988761
Q ss_pred ccCCccccccccccccCCCCCCCEEEEEeeCCCCCC
Q 042822 441 DEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALP 476 (775)
Q Consensus 441 ~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~ 476 (775)
+..+..+++|+.|++++|.....|
T Consensus 165 ------------~~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 165 ------------TGGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp ------------CTTSTTCCCCCEEEEEEEEEECCC
T ss_pred ------------hHHhccCCCCCEEeCCCCcccCCc
Confidence 156788899999999988765544
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.57 E-value=1.1e-14 Score=142.52 Aligned_cols=148 Identities=21% Similarity=0.297 Sum_probs=114.6
Q ss_pred eEEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCC-CcccccccCccEEEcCC
Q 042822 284 YAISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSL-PSSIDLLLNLRTLCLDH 362 (775)
Q Consensus 284 ~~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~ 362 (775)
+.++..++.+..+|..+. ++++.|++++|.+. .++...|..+++|++|++++|.++.+ |..+.++++|++|++++
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~---~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIK---VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCC---EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCC---CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 356666677777776553 67888888888776 56666668888888888888888865 67788888888888888
Q ss_pred CCCCC-ccc-cccCCcccEEEecCCCCccc-chhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCccc
Q 042822 363 GTLGD-ITI-IGELKNLEILSLIGSDIVEF-PEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVE 436 (775)
Q Consensus 363 ~~l~~-p~~-i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 436 (775)
|.++. |+. +..+++|++|++++|.++.+ |..+..+++|++|++++| .+..++...++.+++|++|++++|.+.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 88887 443 67888888888888888866 456788888888888887 566676665788888888888887654
No 107
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.57 E-value=8.1e-16 Score=165.05 Aligned_cols=135 Identities=16% Similarity=0.069 Sum_probs=74.6
Q ss_pred hCCCcccEEEecCCCCCC-----CCcccccccCccEEEcCCCCCCC-----cccc-------ccCCcccEEEecCCCCcc
Q 042822 327 TGMRELKVVDLTNMQLFS-----LPSSIDLLLNLRTLCLDHGTLGD-----ITII-------GELKNLEILSLIGSDIVE 389 (775)
Q Consensus 327 ~~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~L~~~~l~~-----p~~i-------~~l~~L~~L~l~~~~l~~ 389 (775)
..+++|++|++++|.+.. ++..+..+++|++|++++|.+.. |..+ .++++|++|++++|.++.
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 556666666666666652 33345566666666666654332 2222 566677777777776664
Q ss_pred -----cchhhhccCCCCEecccCCccccccchHH----hhcc---------ccccEEEcCCCcccc-eecccCCcccccc
Q 042822 390 -----FPEELGKLTKLRLLDLTNCFHLKVIAANL----IASF---------TRLEELYMSNCFVEW-KVEDEGSSSKRSK 450 (775)
Q Consensus 390 -----lp~~i~~l~~L~~L~l~~~~~l~~~p~~~----l~~L---------~~L~~L~l~~~~~~~-~~~~~~~~~~~~~ 450 (775)
+|..+.++++|++|++++|. ++..+... +..+ ++|++|++++|.+.. .++
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~---------- 177 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK---------- 177 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH----------
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH----------
Confidence 56666777777777777763 33221111 2333 677777777666541 111
Q ss_pred ccccccCCCCCCCEEEEEeeCC
Q 042822 451 ASLDELMPLPRLTTLEIAVEND 472 (775)
Q Consensus 451 ~~l~~l~~l~~L~~L~l~~~~~ 472 (775)
.....+..+++|+.|++++|.+
T Consensus 178 ~l~~~l~~~~~L~~L~L~~n~l 199 (386)
T 2ca6_A 178 EWAKTFQSHRLLHTVKMVQNGI 199 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSCC
T ss_pred HHHHHHHhCCCcCEEECcCCCC
Confidence 1113445566666666665543
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.57 E-value=1.2e-14 Score=142.10 Aligned_cols=149 Identities=15% Similarity=0.239 Sum_probs=112.3
Q ss_pred eEEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCc-ccccccCccEEEcCC
Q 042822 284 YAISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPS-SIDLLLNLRTLCLDH 362 (775)
Q Consensus 284 ~~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~ 362 (775)
+.++++++.+..+|..+ .+.++.|++++|.+.. ..+.+.|..+++|++|++++|.++.++. .++.+++|++|++++
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~--~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTV--LEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCE--ECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCc--cCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 46777778888887654 3456788888887763 2244556788888888888888886654 688888888888888
Q ss_pred CCCCC-c-cccccCCcccEEEecCCCCccc-chhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCccc
Q 042822 363 GTLGD-I-TIIGELKNLEILSLIGSDIVEF-PEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVE 436 (775)
Q Consensus 363 ~~l~~-p-~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 436 (775)
|.+.. + ..++.+++|++|++++|.++.+ |..+..+++|++|++++| .++.+++..++.+++|++|++++|.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 88877 3 4478888888888888888866 566788888888888887 455664444888888888888888765
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.56 E-value=2.8e-14 Score=158.47 Aligned_cols=134 Identities=22% Similarity=0.318 Sum_probs=78.7
Q ss_pred ceeEEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEEEcC
Q 042822 282 KCYAISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTLCLD 361 (775)
Q Consensus 282 ~~~~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~ 361 (775)
+++.|++.++.+..+|..+ +++|++|++++|.+. .+| ..+++|++|++++|.++.+|. +++ +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~---~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALI---SLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCS---CCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCc---ccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence 5666777666666666544 356666666666555 455 235566666666666666665 444 66666666
Q ss_pred CCCCCCccccccCCcccEEEecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCccc
Q 042822 362 HGTLGDITIIGELKNLEILSLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVE 436 (775)
Q Consensus 362 ~~~l~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 436 (775)
+|.++..+. .+++|++|++++|.++.+|. .+++|++|++++| .++.+|. ++ ++|++|++++|.+.
T Consensus 129 ~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~L~~lp~--l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 129 NNQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNN-QLTFLPE--LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp SSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC--CC--TTCCEEECCSSCCS
T ss_pred CCcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCC-CCCCcch--hh--CCCCEEECcCCCCC
Confidence 666655222 45666666666666666655 4556666666665 3444554 33 55666666655544
No 110
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.55 E-value=2.7e-15 Score=159.28 Aligned_cols=111 Identities=17% Similarity=0.185 Sum_probs=59.2
Q ss_pred hhhCCCcccEEEecCCCCCCCC-----ccccccc-CccEEEcCCCCCCC--ccccccC-----CcccEEEecCCCCcccc
Q 042822 325 FFTGMRELKVVDLTNMQLFSLP-----SSIDLLL-NLRTLCLDHGTLGD--ITIIGEL-----KNLEILSLIGSDIVEFP 391 (775)
Q Consensus 325 ~~~~l~~L~~L~l~~~~~~~lp-----~~i~~l~-~L~~L~L~~~~l~~--p~~i~~l-----~~L~~L~l~~~~l~~lp 391 (775)
++...++|++|++++|.++..+ ..+..++ +|++|++++|.+.. +..++.+ ++|++|++++|.++..+
T Consensus 17 ~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 96 (362)
T 3goz_A 17 FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKS 96 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHH
Confidence 3344445666666666666444 3445555 56666666666554 3344443 66666666666665332
Q ss_pred -hh----hhcc-CCCCEecccCCccccccchHHhhc-----cccccEEEcCCCccc
Q 042822 392 -EE----LGKL-TKLRLLDLTNCFHLKVIAANLIAS-----FTRLEELYMSNCFVE 436 (775)
Q Consensus 392 -~~----i~~l-~~L~~L~l~~~~~l~~~p~~~l~~-----L~~L~~L~l~~~~~~ 436 (775)
.. +..+ ++|++|++++|. ++..+...++. .++|++|++++|.+.
T Consensus 97 ~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 97 SDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred HHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 22 2333 566666666663 44443322322 246666666666554
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.55 E-value=9.1e-15 Score=164.36 Aligned_cols=177 Identities=19% Similarity=0.234 Sum_probs=145.9
Q ss_pred CCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEEEcCCCCCCCcccc
Q 042822 292 SGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGDITII 371 (775)
Q Consensus 292 ~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~p~~i 371 (775)
.+..+.....+++|+.|++++|.+. .++. +..+++|+.|+|++|.+..+|. ++.+++|++|+|++|.+..++.+
T Consensus 32 ~i~~~~~~~~L~~L~~L~l~~n~i~---~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l 105 (605)
T 1m9s_A 32 SVTDAVTQNELNSIDQIIANNSDIK---SVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSL 105 (605)
T ss_dssp CTTSEECHHHHTTCCCCBCTTCCCC---CCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTS
T ss_pred CcccccchhcCCCCCEEECcCCCCC---CChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCChhh
Confidence 3333333346888999999999876 4553 5889999999999999998877 99999999999999999998899
Q ss_pred ccCCcccEEEecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccceecccCCccccccc
Q 042822 372 GELKNLEILSLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKA 451 (775)
Q Consensus 372 ~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 451 (775)
+.+++|++|++++|.+..+| .+..+++|+.|++++| .+..++ . ++.+++|++|++++|.+...
T Consensus 106 ~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~-~-l~~l~~L~~L~Ls~N~l~~~------------- 168 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDIT-V-LSRLTKLDTLSLEDNQISDI------------- 168 (605)
T ss_dssp TTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCCG-G-GGSCTTCSEEECCSSCCCCC-------------
T ss_pred ccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCC-ccCCch-h-hcccCCCCEEECcCCcCCCc-------------
Confidence 99999999999999999875 5899999999999998 566674 3 89999999999999987621
Q ss_pred cccccCCCCCCCEEEEEeeCCCCCCCccccccccceEEEecC
Q 042822 452 SLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGD 493 (775)
Q Consensus 452 ~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 493 (775)
..+..+++|+.|+|++|.+..++....+++|+.|++..+.
T Consensus 169 --~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 169 --VPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp --GGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEE
T ss_pred --hhhccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCc
Confidence 2278899999999999988877654356677777666544
No 112
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.54 E-value=2.7e-14 Score=138.68 Aligned_cols=152 Identities=22% Similarity=0.283 Sum_probs=132.0
Q ss_pred ccccceeEEEEEcCCCCCCCCCC--CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcc-cccccC
Q 042822 278 DALKKCYAISWIDSSGGELPEGL--ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSS-IDLLLN 354 (775)
Q Consensus 278 ~~~~~~~~l~l~~~~~~~lp~~~--~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~ 354 (775)
...+++++|++.+|.+..++... .+++|++|++++|.+. .++...|..+++|++|++++|.++.+|.. ++++++
T Consensus 25 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 101 (208)
T 2o6s_A 25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ---SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQ 101 (208)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC---ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccC
Confidence 34568999999999998888753 8999999999999887 67777789999999999999999988765 689999
Q ss_pred ccEEEcCCCCCCC-cc-ccccCCcccEEEecCCCCcccchh-hhccCCCCEecccCCccccccchHHhhccccccEEEcC
Q 042822 355 LRTLCLDHGTLGD-IT-IIGELKNLEILSLIGSDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMS 431 (775)
Q Consensus 355 L~~L~L~~~~l~~-p~-~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~ 431 (775)
|++|++++|.++. ++ .++++++|++|++++|.++.+|.. +..+++|++|++++|.. .+.+++|++|+++
T Consensus 102 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~~~~~l~~L~~~ 173 (208)
T 2o6s_A 102 LKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DCTCPGIRYLSEW 173 (208)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------CCCTTTTHHHHHH
T ss_pred CCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe--------ecCCCCHHHHHHH
Confidence 9999999999988 44 479999999999999999988875 78999999999999843 3456788889998
Q ss_pred CCcccceec
Q 042822 432 NCFVEWKVE 440 (775)
Q Consensus 432 ~~~~~~~~~ 440 (775)
.|.+.+.+|
T Consensus 174 ~n~~~g~ip 182 (208)
T 2o6s_A 174 INKHSGVVR 182 (208)
T ss_dssp HHHCTTTBB
T ss_pred HHhCCceee
Confidence 888887776
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.53 E-value=6.9e-14 Score=155.34 Aligned_cols=171 Identities=21% Similarity=0.242 Sum_probs=113.0
Q ss_pred eecCCccCCCCcccccceeEEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCC
Q 042822 266 VRNGDVWEWPDKDALKKCYAISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSL 345 (775)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l 345 (775)
..+..+..+|. ...++++.|++++|.+..+| ..+++|++|++++|.+. .+|. + .+ +|++|++++|.++.+
T Consensus 66 Ls~n~L~~lp~-~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~---~ip~-l-~~--~L~~L~Ls~N~l~~l 135 (571)
T 3cvr_A 66 LNRLNLSSLPD-NLPPQITVLEITQNALISLP--ELPASLEYLDACDNRLS---TLPE-L-PA--SLKHLDVDNNQLTML 135 (571)
T ss_dssp CCSSCCSCCCS-CCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCS---CCCC-C-CT--TCCEEECCSSCCSCC
T ss_pred eCCCCCCccCH-hHcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCC---Ccch-h-hc--CCCEEECCCCcCCCC
Confidence 33334444443 23466777777777777777 34677778888777766 4555 3 33 777788888777777
Q ss_pred CcccccccCccEEEcCCCCCCCccccccCCcccEEEecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccc
Q 042822 346 PSSIDLLLNLRTLCLDHGTLGDITIIGELKNLEILSLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRL 425 (775)
Q Consensus 346 p~~i~~l~~L~~L~L~~~~l~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L 425 (775)
|. .+++|++|++++|.++..+. .+++|++|++++|.++.+|. +. ++|++|++++| .++.+|. +.. +|
T Consensus 136 p~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N-~L~~lp~--~~~--~L 202 (571)
T 3cvr_A 136 PE---LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTN-LLESLPA--VPV--RN 202 (571)
T ss_dssp CC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSS-CCSSCCC--CC-----
T ss_pred CC---cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCC-CCCchhh--HHH--hh
Confidence 76 56777788888777776322 56777788887777777777 55 77788888776 5566666 333 55
Q ss_pred -------cEEEcCCCcccceecccCCccccccccccccCCCCCCCEEEEEeeCCC
Q 042822 426 -------EELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDN 473 (775)
Q Consensus 426 -------~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~ 473 (775)
++|++++|.+. .+| ..+..+++|+.|++++|.+.
T Consensus 203 ~~~~~~L~~L~Ls~N~l~-~lp-------------~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 203 HHSEETEIFFRCRENRIT-HIP-------------ENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp -----CCEEEECCSSCCC-CCC-------------GGGGGSCTTEEEECCSSSCC
T ss_pred hcccccceEEecCCCcce-ecC-------------HHHhcCCCCCEEEeeCCcCC
Confidence 77777777665 222 45566777777777776654
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.52 E-value=4.2e-14 Score=138.26 Aligned_cols=147 Identities=18% Similarity=0.303 Sum_probs=121.1
Q ss_pred cEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCc-ccccccCccEEEcCCCCCCC--ccccccCCcccEEEe
Q 042822 306 ELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPS-SIDLLLNLRTLCLDHGTLGD--ITIIGELKNLEILSL 382 (775)
Q Consensus 306 r~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~l~~--p~~i~~l~~L~~L~l 382 (775)
+.++++++... .+|..+ .+.|+.|++++|.++.+|. .+..+++|++|++++|.+.. |..+.++++|++|++
T Consensus 14 ~~v~c~~~~l~---~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L 87 (220)
T 2v9t_B 14 NIVDCRGKGLT---EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL 87 (220)
T ss_dssp TEEECTTSCCS---SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEEC
T ss_pred CEEEcCCCCcC---cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEEC
Confidence 57788887766 677654 2689999999999997765 78899999999999999887 577999999999999
Q ss_pred cCCCCcccchh-hhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccceecccCCccccccccccccCCCCC
Q 042822 383 IGSDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLPR 461 (775)
Q Consensus 383 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~ 461 (775)
++|.++.+|.. +..+++|++|++++| .+..++...++.+++|++|++++|.+....+ ..+..+++
T Consensus 88 s~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------------~~~~~l~~ 153 (220)
T 2v9t_B 88 YGNKITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTIAK-------------GTFSPLRA 153 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-------------TTTTTCTT
T ss_pred CCCcCCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEECH-------------HHHhCCCC
Confidence 99999988876 578999999999998 5667765558999999999999998773332 45777889
Q ss_pred CCEEEEEeeCC
Q 042822 462 LTTLEIAVEND 472 (775)
Q Consensus 462 L~~L~l~~~~~ 472 (775)
|+.|++++|..
T Consensus 154 L~~L~L~~N~~ 164 (220)
T 2v9t_B 154 IQTMHLAQNPF 164 (220)
T ss_dssp CCEEECCSSCE
T ss_pred CCEEEeCCCCc
Confidence 99999987754
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.51 E-value=7e-14 Score=148.17 Aligned_cols=147 Identities=22% Similarity=0.261 Sum_probs=79.0
Q ss_pred EEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhh-CCCcccEEEecCCCCCCCC-cccccccCccEEEcCC
Q 042822 285 AISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFT-GMRELKVVDLTNMQLFSLP-SSIDLLLNLRTLCLDH 362 (775)
Q Consensus 285 ~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~-~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~ 362 (775)
.+++.++.+..+|..+ .+.++.|++++|.+. .++...|. .+++|++|+|++|.++.++ ..+.++++|++|+|++
T Consensus 22 ~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~---~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSL-PSYTALLDLSHNNLS---RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp EEECCSSCCSSCCSSC-CTTCSEEECCSSCCC---EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEEeCCCCcCccCccC-CCCCCEEECCCCCCC---ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 4455555555555433 233555666665554 34444444 5566666666666665443 3455566666666666
Q ss_pred CCCCC-c-cccccCCcccEEEecCCCCccc-chhhhccCCCCEecccCCccccccchHHh---hccccccEEEcCCCccc
Q 042822 363 GTLGD-I-TIIGELKNLEILSLIGSDIVEF-PEELGKLTKLRLLDLTNCFHLKVIAANLI---ASFTRLEELYMSNCFVE 436 (775)
Q Consensus 363 ~~l~~-p-~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~p~~~l---~~L~~L~~L~l~~~~~~ 436 (775)
|.++. + ..+..+.+|++|++++|.++.+ |..+..+++|++|++++| .+..+|...+ +.+++|++|++++|.+.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 66555 2 2355566666666666655544 344555666666666655 4555555433 44556666666665554
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.51 E-value=7.4e-14 Score=136.54 Aligned_cols=148 Identities=14% Similarity=0.176 Sum_probs=123.0
Q ss_pred cEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCC--cccccccCccEEEcCCCCCCC--ccccccCCcccEEE
Q 042822 306 ELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLP--SSIDLLLNLRTLCLDHGTLGD--ITIIGELKNLEILS 381 (775)
Q Consensus 306 r~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp--~~i~~l~~L~~L~L~~~~l~~--p~~i~~l~~L~~L~ 381 (775)
++++++++.+. .+|..+ ...+++|++++|.++.++ ..++.+++|++|++++|.++. +..++++.+|++|+
T Consensus 14 ~~l~~s~n~l~---~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 14 TTVDCSNQKLN---KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87 (220)
T ss_dssp TEEECCSSCCS---SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CEeEeCCCCcc---cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence 58899988876 677654 346789999999999773 348899999999999999988 34799999999999
Q ss_pred ecCCCCcccchh-hhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccceecccCCccccccccccccCCCC
Q 042822 382 LIGSDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLP 460 (775)
Q Consensus 382 l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~ 460 (775)
+++|.++.+|.. +..+++|++|++++| .+..+++..++.+++|++|++++|.+....+ ..+..++
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------------~~~~~l~ 153 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTVAP-------------GAFDTLH 153 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCBCT-------------TTTTTCT
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCEECH-------------HHhcCCC
Confidence 999999987764 889999999999998 5666655558999999999999998875444 6778899
Q ss_pred CCCEEEEEeeCCC
Q 042822 461 RLTTLEIAVENDN 473 (775)
Q Consensus 461 ~L~~L~l~~~~~~ 473 (775)
+|+.|++++|...
T Consensus 154 ~L~~L~L~~N~l~ 166 (220)
T 2v70_A 154 SLSTLNLLANPFN 166 (220)
T ss_dssp TCCEEECCSCCEE
T ss_pred CCCEEEecCcCCc
Confidence 9999999887643
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.51 E-value=6.5e-14 Score=141.03 Aligned_cols=148 Identities=22% Similarity=0.245 Sum_probs=131.0
Q ss_pred ccccceeEEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccE
Q 042822 278 DALKKCYAISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRT 357 (775)
Q Consensus 278 ~~~~~~~~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~ 357 (775)
....+++.|++.+|.+..++....+++|++|++++|.+. .++. +..+++|++|++++|.++.+|.... .+|++
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~---~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~ 110 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQIS---DLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSR 110 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC---CCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCE
T ss_pred hhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccC---CChh--hccCCCCCEEECCCCccCCcCcccc--CcccE
Confidence 346789999999999999985558999999999999887 5665 6899999999999999999886544 99999
Q ss_pred EEcCCCCCCCccccccCCcccEEEecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCccc
Q 042822 358 LCLDHGTLGDITIIGELKNLEILSLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVE 436 (775)
Q Consensus 358 L~L~~~~l~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 436 (775)
|++++|.++.++.++++++|++|++++|.++.+| .++.+++|++|++++| .+..+ .. ++.+++|++|++++|.+.
T Consensus 111 L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N-~i~~~-~~-l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 111 LFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGN-EITNT-GG-LTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp EECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTS-CCCBC-TT-STTCCCCCEEEEEEEEEE
T ss_pred EEccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCC-cCcch-HH-hccCCCCCEEeCCCCccc
Confidence 9999999999778999999999999999999987 6999999999999998 56666 33 899999999999999876
No 118
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.51 E-value=3e-15 Score=158.90 Aligned_cols=159 Identities=15% Similarity=0.120 Sum_probs=99.9
Q ss_pred CCCccEEEcccCCCCCccccCh----hhhhCCC-cccEEEecCCCCCCC-Ccccccc-----cCccEEEcCCCCCCC--c
Q 042822 302 CPQLELLLLSSKHSSVDVNIPR----SFFTGMR-ELKVVDLTNMQLFSL-PSSIDLL-----LNLRTLCLDHGTLGD--I 368 (775)
Q Consensus 302 ~~~Lr~L~l~~~~~~~~~~l~~----~~~~~l~-~L~~L~l~~~~~~~l-p~~i~~l-----~~L~~L~L~~~~l~~--p 368 (775)
.++|++|++++|.+. ..+. ..|..++ +|++|++++|.++.. +..+..+ ++|++|++++|.++. +
T Consensus 21 ~~~L~~L~Ls~n~l~---~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 21 PHGVTSLDLSLNNLY---SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp CTTCCEEECTTSCGG---GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred CCCceEEEccCCCCC---hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 344888888887765 3443 4456777 788888888887743 4555554 788888888888765 3
Q ss_pred cc----cccC-CcccEEEecCCCCcccch-hh----hc-cCCCCEecccCCcccc-----ccchHHhhccc-cccEEEcC
Q 042822 369 TI----IGEL-KNLEILSLIGSDIVEFPE-EL----GK-LTKLRLLDLTNCFHLK-----VIAANLIASFT-RLEELYMS 431 (775)
Q Consensus 369 ~~----i~~l-~~L~~L~l~~~~l~~lp~-~i----~~-l~~L~~L~l~~~~~l~-----~~p~~~l~~L~-~L~~L~l~ 431 (775)
.. +..+ ++|++|++++|.++..+. .+ .. .++|++|++++|. ++ .++.. +..++ +|++|+++
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~-l~~~~~~L~~L~Ls 175 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQI-LAAIPANVNSLNLR 175 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHH-HHTSCTTCCEEECT
T ss_pred HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHH-HhcCCccccEeeec
Confidence 33 3334 788888888887775543 22 23 2578888888873 44 23333 45554 78888888
Q ss_pred CCcccceecccCCccccccccccccCCC-CCCCEEEEEeeCCCC
Q 042822 432 NCFVEWKVEDEGSSSKRSKASLDELMPL-PRLTTLEIAVENDNA 474 (775)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l-~~L~~L~l~~~~~~~ 474 (775)
+|.+....+ ......+..+ ++|+.|++++|.+..
T Consensus 176 ~n~l~~~~~---------~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 176 GNNLASKNC---------AELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp TSCGGGSCH---------HHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred CCCCchhhH---------HHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 887653222 1122234445 478888887776543
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.50 E-value=1.2e-13 Score=136.02 Aligned_cols=148 Identities=21% Similarity=0.277 Sum_probs=125.3
Q ss_pred ccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCC-CcccccccCccEEEcCCCCCCC-c-cccccCCcccEEE
Q 042822 305 LELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSL-PSSIDLLLNLRTLCLDHGTLGD-I-TIIGELKNLEILS 381 (775)
Q Consensus 305 Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~l~~-p-~~i~~l~~L~~L~ 381 (775)
-+.++.+++... .+|..+ .++|++|++++|.+..+ |..++.+++|++|++++|.+.. + ..++.+++|++|+
T Consensus 21 ~~~v~c~~~~l~---~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 21 GTTVDCRSKRHA---SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp TTEEECTTSCCS---SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEeEccCCCcC---ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence 457888877766 677654 48899999999999976 6778999999999999999988 4 4478999999999
Q ss_pred ecCCCCcccchh-hhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccceecccCCccccccccccccCCCC
Q 042822 382 LIGSDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLP 460 (775)
Q Consensus 382 l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~ 460 (775)
+++|.++.+|.. +..+++|++|++++| .+..+|.. ++.+++|++|++++|.+....+ ..+..++
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~~-------------~~~~~l~ 159 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLKSIPH-------------GAFDRLS 159 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSCCCCCCT-------------TTTTTCT
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCCcCCccCH-------------HHHhCCC
Confidence 999999988765 689999999999998 67799988 8999999999999998773222 5578889
Q ss_pred CCCEEEEEeeCCC
Q 042822 461 RLTTLEIAVENDN 473 (775)
Q Consensus 461 ~L~~L~l~~~~~~ 473 (775)
+|+.|++++|...
T Consensus 160 ~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 160 SLTHAYLFGNPWD 172 (229)
T ss_dssp TCCEEECTTSCBC
T ss_pred CCCEEEeeCCCcc
Confidence 9999999887654
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.50 E-value=3.2e-14 Score=150.78 Aligned_cols=150 Identities=26% Similarity=0.308 Sum_probs=73.1
Q ss_pred cceeEEEEEcCCCCCCCCCC---CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCc-ccccccCcc
Q 042822 281 KKCYAISWIDSSGGELPEGL---ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPS-SIDLLLNLR 356 (775)
Q Consensus 281 ~~~~~l~l~~~~~~~lp~~~---~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~ 356 (775)
..++.|++++|.+..++... .+++|++|++++|.+. .++...|..+++|++|+|++|.++.+|. .+..+.+|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~---~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN---FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE 115 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC---ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCC
Confidence 34455555555554444322 4555555555555444 3443334555555555555555554432 345555555
Q ss_pred EEEcCCCCCCC--ccccccCCcccEEEecCCCCcccchhh----hccCCCCEecccCCccccccchHHhhcccc--ccEE
Q 042822 357 TLCLDHGTLGD--ITIIGELKNLEILSLIGSDIVEFPEEL----GKLTKLRLLDLTNCFHLKVIAANLIASFTR--LEEL 428 (775)
Q Consensus 357 ~L~L~~~~l~~--p~~i~~l~~L~~L~l~~~~l~~lp~~i----~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~--L~~L 428 (775)
+|+|++|.+.. +..+..+.+|++|++++|.++.+|..+ ..+++|++|++++| .+..+|...+..+++ |+.|
T Consensus 116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l 194 (361)
T 2xot_A 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGL 194 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTE
T ss_pred EEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceE
Confidence 55555555544 334555555555555555555555443 34555555555554 344444433444444 2445
Q ss_pred EcCCCc
Q 042822 429 YMSNCF 434 (775)
Q Consensus 429 ~l~~~~ 434 (775)
++.+|.
T Consensus 195 ~l~~N~ 200 (361)
T 2xot_A 195 YLHNNP 200 (361)
T ss_dssp ECCSSC
T ss_pred EecCCC
Confidence 555444
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.49 E-value=1.3e-13 Score=128.81 Aligned_cols=138 Identities=23% Similarity=0.232 Sum_probs=84.2
Q ss_pred CCcccEEEecCCCCC--CCCcccccccCccEEEcCCCCCCCccccccCCcccEEEecCCCCcc-cchhhhccCCCCEecc
Q 042822 329 MRELKVVDLTNMQLF--SLPSSIDLLLNLRTLCLDHGTLGDITIIGELKNLEILSLIGSDIVE-FPEELGKLTKLRLLDL 405 (775)
Q Consensus 329 l~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~L~~~~l~~p~~i~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l 405 (775)
.++|++|++++|.+. .+|..++.+++|++|++++|.++....++.+++|++|++++|.++. +|..+.++++|++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 356666666666666 6666666666677777766666655556666677777777766665 5655666677777777
Q ss_pred cCCccccccch-HHhhccccccEEEcCCCcccceecccCCccccccccccccCCCCCCCEEEEEeeCCCCCCC
Q 042822 406 TNCFHLKVIAA-NLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPE 477 (775)
Q Consensus 406 ~~~~~l~~~p~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~ 477 (775)
++| .++.+|. ..++.+++|++|++++|.+....+ .....+..+++|+.|+++.+....+|.
T Consensus 103 s~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~----------~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 103 SGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLND----------YRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp BSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT----------HHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred cCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHH----------HHHHHHHhCccCcEecCCCCChhhccc
Confidence 666 4555442 226666777777776666541110 000245566667777766666655554
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.44 E-value=1.3e-13 Score=159.15 Aligned_cols=154 Identities=19% Similarity=0.244 Sum_probs=91.8
Q ss_pred cceeEEEEEcCCCCCCCCCC-CCCCccEEEccc-----CCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccC
Q 042822 281 KKCYAISWIDSSGGELPEGL-ECPQLELLLLSS-----KHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLN 354 (775)
Q Consensus 281 ~~~~~l~l~~~~~~~lp~~~-~~~~Lr~L~l~~-----~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~ 354 (775)
.+++++++.++.....+... ....|+.+.+.. |.. .++.+.|..++.|++|+|++|.+..+|..++++++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~----~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRM----VMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDF 248 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCS
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccce----ecChhhhccCCCCcEEECCCCCCCCCChhhcCCCC
Confidence 45777777777766655433 333333333322 222 24455567888888888888888888888888888
Q ss_pred ccEEEcCCCCCCC-ccccccCCcccEEEecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCC
Q 042822 355 LRTLCLDHGTLGD-ITIIGELKNLEILSLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNC 433 (775)
Q Consensus 355 L~~L~L~~~~l~~-p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~ 433 (775)
|++|+|++|.++. |..+++|++|++|+|++|.++.+|..+++|++|++|++++| .++.+|.. |+++++|++|++++|
T Consensus 249 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN-MVTTLPWE-FGNLCNLQFLGVEGN 326 (727)
T ss_dssp CSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSS-CCCCCCSS-TTSCTTCCCEECTTS
T ss_pred CCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCC-CCCccChh-hhcCCCccEEeCCCC
Confidence 8888888888877 77788888888888888888888888888888888888887 56788877 888888888888888
Q ss_pred cccceec
Q 042822 434 FVEWKVE 440 (775)
Q Consensus 434 ~~~~~~~ 440 (775)
.+.+.++
T Consensus 327 ~l~~~~p 333 (727)
T 4b8c_D 327 PLEKQFL 333 (727)
T ss_dssp CCCSHHH
T ss_pred ccCCCCh
Confidence 7775544
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.43 E-value=2.5e-13 Score=123.98 Aligned_cols=124 Identities=25% Similarity=0.358 Sum_probs=61.3
Q ss_pred CCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEEEcCCCCCCC--ccccccCCcccEE
Q 042822 303 PQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGD--ITIIGELKNLEIL 380 (775)
Q Consensus 303 ~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~--p~~i~~l~~L~~L 380 (775)
++|+.|++++|.+.. +.+|. .+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. |..++++++|++|
T Consensus 17 ~~l~~L~l~~n~l~~-~~~~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNE-GKLEG-LTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBT-TBCCS-CCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCCh-hHHHH-HHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 344455555544330 02333 224555555555555555544 445555555555555555544 2233445555555
Q ss_pred EecCCCCcccc--hhhhccCCCCEecccCCccccccch---HHhhccccccEEEc
Q 042822 381 SLIGSDIVEFP--EELGKLTKLRLLDLTNCFHLKVIAA---NLIASFTRLEELYM 430 (775)
Q Consensus 381 ~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~l~~~p~---~~l~~L~~L~~L~l 430 (775)
++++|.++.+| ..++.+++|++|++++| .+..+|. ..++.+++|++|++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETT
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccC
Confidence 55555555443 44555555555555555 3344433 23555555555554
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.42 E-value=2.9e-13 Score=126.39 Aligned_cols=130 Identities=25% Similarity=0.306 Sum_probs=81.0
Q ss_pred CCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEEEcCCCCCCC-c-cccccCCcccEE
Q 042822 303 PQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGD-I-TIIGELKNLEIL 380 (775)
Q Consensus 303 ~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~-p-~~i~~l~~L~~L 380 (775)
++|+.|++++|.+.. +.+|.. +..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. + ..++++++|++|
T Consensus 24 ~~L~~L~l~~n~l~~-~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSND-GKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBT-TBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCCh-hhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 456666666665431 134443 35666777777777766665 566667777777777776665 3 334456777777
Q ss_pred EecCCCCcccc--hhhhccCCCCEecccCCccccccch---HHhhccccccEEEcCCCccc
Q 042822 381 SLIGSDIVEFP--EELGKLTKLRLLDLTNCFHLKVIAA---NLIASFTRLEELYMSNCFVE 436 (775)
Q Consensus 381 ~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~l~~~p~---~~l~~L~~L~~L~l~~~~~~ 436 (775)
++++|.++.+| ..+..+++|++|++++| .+..+|. ..+..+++|++|++++|...
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 77777666655 56667777777777776 4555554 33666777777777666543
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.40 E-value=5.7e-13 Score=125.34 Aligned_cols=129 Identities=17% Similarity=0.201 Sum_probs=82.7
Q ss_pred CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEEEcCCCCCCC-cccc-ccCCccc
Q 042822 301 ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGD-ITII-GELKNLE 378 (775)
Q Consensus 301 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~-p~~i-~~l~~L~ 378 (775)
.+++|+.|++++|.+. .++. +....++|++|++++|.++.+ ..++.+++|++|++++|.++. |+.+ +.+++|+
T Consensus 17 ~~~~L~~L~l~~n~l~---~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP---VIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp CTTSCEEEECTTSCCC---SCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CcCCceEEEeeCCCCc---hhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 5566677777776655 3432 322233777777777777665 456677777777777777666 4343 6677777
Q ss_pred EEEecCCCCcccch--hhhccCCCCEecccCCccccccchH---HhhccccccEEEcCCCcc
Q 042822 379 ILSLIGSDIVEFPE--ELGKLTKLRLLDLTNCFHLKVIAAN---LIASFTRLEELYMSNCFV 435 (775)
Q Consensus 379 ~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~~p~~---~l~~L~~L~~L~l~~~~~ 435 (775)
+|++++|.++.+|. .++.+++|++|++++| .+..+|.. .++.+++|++|++++|..
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 77777777776665 6667777777777776 34555543 366677777777666644
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.40 E-value=1.3e-12 Score=124.55 Aligned_cols=124 Identities=18% Similarity=0.247 Sum_probs=86.2
Q ss_pred cEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEEEcCCCCCCC--ccccccCCcccEEEec
Q 042822 306 ELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGD--ITIIGELKNLEILSLI 383 (775)
Q Consensus 306 r~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~--p~~i~~l~~L~~L~l~ 383 (775)
++++++++.+. .+|..+ .++|++|++++|.++.+|..++++++|++|++++|.++. +..+.++.+|++|+++
T Consensus 13 ~~l~~~~~~l~---~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLK---VLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCS---SCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCCC---cCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 35556555554 455443 246777777777777777777777777777777777776 3457777777777777
Q ss_pred CCCCcccch-hhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCccc
Q 042822 384 GSDIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVE 436 (775)
Q Consensus 384 ~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 436 (775)
+|.++.+|. .+..+++|++|++++| .+..+|.+.+..+++|++|++++|.+.
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCee
Confidence 777776654 4777777777777776 566676665777777777777777654
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.38 E-value=1.7e-13 Score=158.06 Aligned_cols=139 Identities=22% Similarity=0.224 Sum_probs=115.6
Q ss_pred CCCC-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEEEcCCCCCCC-ccccccC
Q 042822 297 PEGL-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGD-ITIIGEL 374 (775)
Q Consensus 297 p~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~-p~~i~~l 374 (775)
+..+ .++.|+.|++++|.+. .+|..++ .+++|++|+|++|.++.+|..|++|++|++|+|++|.++. |..+++|
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~---~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l 292 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF---NISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSC 292 (727)
T ss_dssp -----CCCCCCEEECTTSCCS---CCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGG
T ss_pred hhhhccCCCCcEEECCCCCCC---CCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCC
Confidence 3334 8899999999999987 7888875 8999999999999999999999999999999999999998 8889999
Q ss_pred CcccEEEecCCCCcccchhhhccCCCCEecccCCccccccchHHhhcccc-ccEEEcCCCcccceec
Q 042822 375 KNLEILSLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTR-LEELYMSNCFVEWKVE 440 (775)
Q Consensus 375 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~-L~~L~l~~~~~~~~~~ 440 (775)
.+|++|+|++|.++.+|..|++|++|++|++++|...+.+|.. ++.+.. +..|++++|.+.+.+|
T Consensus 293 ~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI-LTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp TTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHH-HHHHHHHHHHHHHHHCCCCCCCC
T ss_pred CCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHH-HhhcchhhhHHhhccCcccCcCc
Confidence 9999999999999999999999999999999999554455544 554422 2236677777765554
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.38 E-value=8.5e-13 Score=120.38 Aligned_cols=123 Identities=20% Similarity=0.238 Sum_probs=109.2
Q ss_pred ccceeEEEEEcCCCC--CCCCCC-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCC-CCcccccccCc
Q 042822 280 LKKCYAISWIDSSGG--ELPEGL-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFS-LPSSIDLLLNL 355 (775)
Q Consensus 280 ~~~~~~l~l~~~~~~--~lp~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L 355 (775)
..++++|++.+|.+. .+|..+ .+++|++|++++|.+.. + ..+..+++|++|++++|.++. +|..++.+++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~---~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS---I--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC---C--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC---c--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 467999999999887 788765 89999999999998873 4 346899999999999999997 78888889999
Q ss_pred cEEEcCCCCCCC-c--cccccCCcccEEEecCCCCcccch----hhhccCCCCEecccC
Q 042822 356 RTLCLDHGTLGD-I--TIIGELKNLEILSLIGSDIVEFPE----ELGKLTKLRLLDLTN 407 (775)
Q Consensus 356 ~~L~L~~~~l~~-p--~~i~~l~~L~~L~l~~~~l~~lp~----~i~~l~~L~~L~l~~ 407 (775)
++|++++|.++. + ..++.+++|++|++++|.++.+|. .++.+++|++|++++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999999988 4 789999999999999999998876 689999999999863
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.37 E-value=1.7e-12 Score=123.82 Aligned_cols=105 Identities=17% Similarity=0.187 Sum_probs=51.2
Q ss_pred cccEEEecCCCCCCCCcc--cccccCccEEEcCCCCCCC--ccccccCCcccEEEecCCCCcccchh-hhccCCCCEecc
Q 042822 331 ELKVVDLTNMQLFSLPSS--IDLLLNLRTLCLDHGTLGD--ITIIGELKNLEILSLIGSDIVEFPEE-LGKLTKLRLLDL 405 (775)
Q Consensus 331 ~L~~L~l~~~~~~~lp~~--i~~l~~L~~L~L~~~~l~~--p~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 405 (775)
+|++|++++|.++.++.. ++.+++|++|++++|.++. |..++++.+|++|++++|.++.+|.. +..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 445555555555544432 4555555555555555544 33455555555555555555544332 445555555555
Q ss_pred cCCccccccchHHhhccccccEEEcCCCccc
Q 042822 406 TNCFHLKVIAANLIASFTRLEELYMSNCFVE 436 (775)
Q Consensus 406 ~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 436 (775)
++|. +..+++..++.+++|++|++++|.+.
T Consensus 110 ~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 110 YDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCc-CCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 5542 33332222555555555555555443
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.37 E-value=1.7e-12 Score=123.96 Aligned_cols=125 Identities=23% Similarity=0.351 Sum_probs=109.5
Q ss_pred cEEEecCCCCCCCCcccccccCccEEEcCCCCCCC-cc--ccccCCcccEEEecCCCCccc-chhhhccCCCCEecccCC
Q 042822 333 KVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGD-IT--IIGELKNLEILSLIGSDIVEF-PEELGKLTKLRLLDLTNC 408 (775)
Q Consensus 333 ~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~-p~--~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~ 408 (775)
++++++++.++.+|..+.. +|++|++++|.++. ++ .++++++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 7899999999999987765 89999999999988 44 389999999999999999977 678999999999999998
Q ss_pred ccccccchHHhhccccccEEEcCCCcccceecccCCccccccccccccCCCCCCCEEEEEeeCCC
Q 042822 409 FHLKVIAANLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDN 473 (775)
Q Consensus 409 ~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~ 473 (775)
.+..++...++++++|++|++++|.+....+ ..+..+++|+.|++++|...
T Consensus 89 -~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------------~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 -KIKEISNKMFLGLHQLKTLNLYDNQISCVMP-------------GSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp -CCCEECSSSSTTCTTCCEEECCSSCCCEECT-------------TSSTTCTTCCEEECTTCCBC
T ss_pred -cCCccCHHHhcCCCCCCEEECCCCcCCeeCH-------------HHhhcCCCCCEEEeCCCCcc
Confidence 5667766668999999999999999886555 67888999999999987654
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.36 E-value=1.4e-12 Score=122.74 Aligned_cols=135 Identities=19% Similarity=0.210 Sum_probs=111.7
Q ss_pred hhCCCcccEEEecCCCCCCCCccccccc-CccEEEcCCCCCCCccccccCCcccEEEecCCCCcccchhh-hccCCCCEe
Q 042822 326 FTGMRELKVVDLTNMQLFSLPSSIDLLL-NLRTLCLDHGTLGDITIIGELKNLEILSLIGSDIVEFPEEL-GKLTKLRLL 403 (775)
Q Consensus 326 ~~~l~~L~~L~l~~~~~~~lp~~i~~l~-~L~~L~L~~~~l~~p~~i~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L 403 (775)
+.++.+|++|++++|.++.+|. +..+. +|++|++++|.++..+.++.+++|++|++++|.++.+|..+ +.+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 3678899999999999998865 55555 99999999999988888999999999999999999998765 999999999
Q ss_pred cccCCccccccch-HHhhccccccEEEcCCCcccceecccCCccccccccccccCCCCCCCEEEEEeeCC
Q 042822 404 DLTNCFHLKVIAA-NLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVEND 472 (775)
Q Consensus 404 ~l~~~~~l~~~p~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~ 472 (775)
++++| .++.+|. ..++.+++|++|++++|.+.. .+ ......+..+++|+.|+++.+..
T Consensus 94 ~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~---------~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 94 ILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTN-KK---------HYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp ECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGG-ST---------THHHHHHHHCTTCSEETTEECCH
T ss_pred ECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCC-cH---------hHHHHHHHHCCccceeCCCcCCH
Confidence 99998 5778876 238999999999999998762 22 00112377889999999887653
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.32 E-value=7e-12 Score=119.52 Aligned_cols=125 Identities=22% Similarity=0.248 Sum_probs=108.0
Q ss_pred ccEEEecCCCCCCCCcccccccCccEEEcCCCCCCC-ccccccCCcccEEEecCCCCcccch-hhhccCCCCEecccCCc
Q 042822 332 LKVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGD-ITIIGELKNLEILSLIGSDIVEFPE-ELGKLTKLRLLDLTNCF 409 (775)
Q Consensus 332 L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~-p~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~ 409 (775)
-++++++++.++.+|..+. .+|++|++++|.++. |..++++.+|++|++++|.++.++. .+.++++|++|++++|
T Consensus 12 ~~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N- 88 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN- 88 (193)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred CCEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-
Confidence 3689999999999998765 689999999999988 7889999999999999999998875 5899999999999998
Q ss_pred cccccchHHhhccccccEEEcCCCcccceecccCCccccccccccccCCCCCCCEEEEEeeCC
Q 042822 410 HLKVIAANLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVEND 472 (775)
Q Consensus 410 ~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~ 472 (775)
.+..++...++.+++|++|++++|.+....+ ..+..+++|+.|++++|..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~-------------~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPE-------------GAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCT-------------TTTTTCTTCCEEECCSSCE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeCh-------------hhhhcCccccEEEeCCCCe
Confidence 6777877669999999999999998873222 4577889999999987754
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.29 E-value=2e-11 Score=114.90 Aligned_cols=122 Identities=24% Similarity=0.339 Sum_probs=74.0
Q ss_pred eEEEEEcCCCCCCCCCCCCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcc-cccccCccEEEcCC
Q 042822 284 YAISWIDSSGGELPEGLECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSS-IDLLLNLRTLCLDH 362 (775)
Q Consensus 284 ~~l~l~~~~~~~lp~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~L~~ 362 (775)
+.+.+.++++..+|..+ .++|++|++++|.+. .++...|..+++|++|++++|.++.+|.. ++.+++|++|++++
T Consensus 10 ~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQ---SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCSSCCTTC-CTTCSEEECCSSCCC---CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCccCCCCC-CCCCcEEEeCCCccc---EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 34555556666666433 256666777666655 45555556666677777766666665543 46666666666666
Q ss_pred CCCCC-cc-ccccCCcccEEEecCCCCcccchh-hhccCCCCEecccCCc
Q 042822 363 GTLGD-IT-IIGELKNLEILSLIGSDIVEFPEE-LGKLTKLRLLDLTNCF 409 (775)
Q Consensus 363 ~~l~~-p~-~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 409 (775)
|.++. ++ .++++++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 66665 32 356666666666666666666554 3556666666666653
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.29 E-value=1.6e-11 Score=115.49 Aligned_cols=126 Identities=23% Similarity=0.354 Sum_probs=96.9
Q ss_pred ccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCc-ccccccCccEEEcCCCCCCC-cc-ccccCCcccEEE
Q 042822 305 LELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPS-SIDLLLNLRTLCLDHGTLGD-IT-IIGELKNLEILS 381 (775)
Q Consensus 305 Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~l~~-p~-~i~~l~~L~~L~ 381 (775)
.+.++++++... .+|..+ .++|++|++++|.+..+|. .++.+++|++|++++|.++. ++ .++.+++|++|+
T Consensus 9 ~~~l~~~~~~l~---~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (177)
T 2o6r_A 9 GTEIRCNSKGLT---SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY 82 (177)
T ss_dssp TTEEECCSSCCS---SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEecCCCCc---cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEE
Confidence 467777777765 566543 3678888888888887765 45788888888888888877 43 368888888888
Q ss_pred ecCCCCcccchh-hhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccc
Q 042822 382 LIGSDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEW 437 (775)
Q Consensus 382 l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~ 437 (775)
+++|.++.+|.. +..+++|++|++++| .++.+|...+..+++|++|++++|.+..
T Consensus 83 l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 83 LHENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCeec
Confidence 888888877765 578888888888887 5667777656778888888888887663
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.28 E-value=9.1e-14 Score=133.64 Aligned_cols=140 Identities=19% Similarity=0.302 Sum_probs=94.2
Q ss_pred ccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEEEcCCCCCCC-ccccccCCcccEEEecCCCCcccchhhhccC
Q 042822 320 NIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGD-ITIIGELKNLEILSLIGSDIVEFPEELGKLT 398 (775)
Q Consensus 320 ~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~-p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~ 398 (775)
.+|.. +..+++|++|++++|.++.+| .++.+++|++|++++|.++. |..++.+++|++|++++|.++.+| .++.++
T Consensus 39 ~l~~~-~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~ 115 (198)
T 1ds9_A 39 KMDAT-LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLV 115 (198)
T ss_dssp CCHHH-HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHH
T ss_pred hhhHH-HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCC
Confidence 34443 477888888888888887777 77788888888888888777 556666778888888888777776 577788
Q ss_pred CCCEecccCCccccccch-HHhhccccccEEEcCCCcccceecccCCccccccccccccCCCCCCCEEE
Q 042822 399 KLRLLDLTNCFHLKVIAA-NLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLE 466 (775)
Q Consensus 399 ~L~~L~l~~~~~l~~~p~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~ 466 (775)
+|++|++++| .+..++. ..++.+++|++|++++|.+....+... .........+..+++|+.|+
T Consensus 116 ~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~---~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 116 NLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENN---ATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTT---THHHHHHHHHHHCSSCSEEC
T ss_pred CCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCcccccccccc---chHHHHHHHHHhCCCcEEEC
Confidence 8888888877 4555543 337778888888888887654333000 00001112356677777665
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.28 E-value=1.1e-11 Score=138.43 Aligned_cols=123 Identities=21% Similarity=0.242 Sum_probs=105.4
Q ss_pred cccEEEecCCCCCCCCcccccccCccEEEcCCCCCCC-ccccccCCcccEEEecCCCCcccchhhhccCCCCEecccCCc
Q 042822 331 ELKVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGD-ITIIGELKNLEILSLIGSDIVEFPEELGKLTKLRLLDLTNCF 409 (775)
Q Consensus 331 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~-p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 409 (775)
.|++|++++|.++.+|. ++.+++|++|++++|.++. |..++++++|++|++++|.++.+| .++++++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N- 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN- 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS-
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC-
Confidence 58999999999999997 9999999999999999998 889999999999999999999999 8999999999999998
Q ss_pred ccccc--chHHhhccccccEEEcCCCcccceecccCCccccccccccccCCCCCCCEEEE
Q 042822 410 HLKVI--AANLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEI 467 (775)
Q Consensus 410 ~l~~~--p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l 467 (775)
.++.+ |.. ++++++|++|++++|.+....+ ....-+..+++|+.|++
T Consensus 519 ~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~----------~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 519 RLQQSAAIQP-LVSCPRLVLLNLQGNSLCQEEG----------IQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCSSSTTGG-GGGCTTCCEEECTTSGGGGSSS----------CTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCcHH-HhcCCCCCEEEecCCcCCCCcc----------HHHHHHHHCcccCccCC
Confidence 56666 666 9999999999999999874433 11122344788888753
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.28 E-value=9.2e-12 Score=139.09 Aligned_cols=190 Identities=21% Similarity=0.238 Sum_probs=140.6
Q ss_pred eeEEEEEcCCCCCCCCCC-CCCCccEEEcccCCC-----------CCccccChhhhhCCCcccEEE-ecCCCCCCCCc--
Q 042822 283 CYAISWIDSSGGELPEGL-ECPQLELLLLSSKHS-----------SVDVNIPRSFFTGMRELKVVD-LTNMQLFSLPS-- 347 (775)
Q Consensus 283 ~~~l~l~~~~~~~lp~~~-~~~~Lr~L~l~~~~~-----------~~~~~l~~~~~~~l~~L~~L~-l~~~~~~~lp~-- 347 (775)
+++|++++|.+..+|..+ .+++|+.|++++|.. ... ..++..++.+++|+.|+ ++.+.+..++.
T Consensus 351 L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~-~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~ 429 (567)
T 1dce_A 351 LFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPL-LYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 429 (567)
T ss_dssp SSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTG-GGHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred ceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccc-cCCHHHHHHHHhcccCcchhhcccchhhhhh
Confidence 344555555555666555 667777777655420 011 23334557888899988 56554433322
Q ss_pred ----cccc--ccCccEEEcCCCCCCCccccccCCcccEEEecCCCCcccchhhhccCCCCEecccCCccccccchHHhhc
Q 042822 348 ----SIDL--LLNLRTLCLDHGTLGDITIIGELKNLEILSLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIAS 421 (775)
Q Consensus 348 ----~i~~--l~~L~~L~L~~~~l~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~ 421 (775)
.+.. ...|++|++++|.++..+.++++++|++|++++|.++.+|..++++++|++|++++| .++.+| . +++
T Consensus 430 l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~-l~~ 506 (567)
T 1dce_A 430 LLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-G-VAN 506 (567)
T ss_dssp HHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-G-GTT
T ss_pred hhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-c-cCC
Confidence 1111 126999999999999944599999999999999999999999999999999999998 677788 5 999
Q ss_pred cccccEEEcCCCcccceecccCCccccccccccccCCCCCCCEEEEEeeCCCCCCCcc-----ccccccceE
Q 042822 422 FTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNALPEGF-----FVRELERFK 488 (775)
Q Consensus 422 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~L~~L~ 488 (775)
+++|++|++++|.+.... .+..++.+++|+.|++++|.+...|... .+++|+.|+
T Consensus 507 l~~L~~L~Ls~N~l~~~~------------~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 507 LPRLQELLLCNNRLQQSA------------AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CSSCCEEECCSSCCCSSS------------TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCcEEECCCCCCCCCC------------CcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 999999999999887433 0378899999999999999988887644 246676653
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.20 E-value=5.1e-13 Score=128.35 Aligned_cols=142 Identities=18% Similarity=0.224 Sum_probs=116.9
Q ss_pred eeEEEEEcC--CCCCCCCCC-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCcccccccCccEEE
Q 042822 283 CYAISWIDS--SGGELPEGL-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTLC 359 (775)
Q Consensus 283 ~~~l~l~~~--~~~~lp~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 359 (775)
++...+.+. .+..+|..+ .+++|++|++++|.+. .+| .+..+++|++|++++|.++.+|..++.+++|++|+
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~---~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~ 99 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE---KIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELW 99 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES---CCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc---ccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEE
Confidence 444455433 345555444 7899999999999876 566 35889999999999999999999999999999999
Q ss_pred cCCCCCCCccccccCCcccEEEecCCCCcccch--hhhccCCCCEecccCCccccccc---------hHHhhccccccEE
Q 042822 360 LDHGTLGDITIIGELKNLEILSLIGSDIVEFPE--ELGKLTKLRLLDLTNCFHLKVIA---------ANLIASFTRLEEL 428 (775)
Q Consensus 360 L~~~~l~~p~~i~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~~p---------~~~l~~L~~L~~L 428 (775)
+++|.+..++.++++++|++|++++|.++.+|. .+..+++|++|++++|......| ...+..+++|++|
T Consensus 100 L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 100 ISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp EEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred CcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEE
Confidence 999999996689999999999999999998775 78999999999999985433323 2347889999999
Q ss_pred E
Q 042822 429 Y 429 (775)
Q Consensus 429 ~ 429 (775)
+
T Consensus 180 d 180 (198)
T 1ds9_A 180 D 180 (198)
T ss_dssp C
T ss_pred C
Confidence 7
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.17 E-value=8.4e-11 Score=109.86 Aligned_cols=100 Identities=27% Similarity=0.429 Sum_probs=53.2
Q ss_pred cEEEecCCCCCCCCcccccccCccEEEcCCCCCCC--ccccccCCcccEEEecCCCCcccchh-hhccCCCCEecccCCc
Q 042822 333 KVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGD--ITIIGELKNLEILSLIGSDIVEFPEE-LGKLTKLRLLDLTNCF 409 (775)
Q Consensus 333 ~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~--p~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 409 (775)
+.++++++.+..+|..+. .+|++|++++|.+.. |..++++++|++|++++|+++.+|.. +.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N- 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN- 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-
Confidence 455555555555555443 455555555555554 23455555555555555555555543 345555555555554
Q ss_pred cccccchHHhhccccccEEEcCCCcc
Q 042822 410 HLKVIAANLIASFTRLEELYMSNCFV 435 (775)
Q Consensus 410 ~l~~~p~~~l~~L~~L~~L~l~~~~~ 435 (775)
.+..+|...++.+++|++|++++|.+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCc
Confidence 34445544455555555555555544
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.16 E-value=9.9e-11 Score=108.99 Aligned_cols=102 Identities=24% Similarity=0.332 Sum_probs=60.9
Q ss_pred ccEEEecCCCCCCCCcccccccCccEEEcCCCCCCC--ccccccCCcccEEEecCCCCcccchh-hhccCCCCEecccCC
Q 042822 332 LKVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGD--ITIIGELKNLEILSLIGSDIVEFPEE-LGKLTKLRLLDLTNC 408 (775)
Q Consensus 332 L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~--p~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~ 408 (775)
.++++++++.++.+|..+. .+|++|++++|.++. |..++++++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 3556666666666665543 556666666666655 34466666666666666666665554 356666666666665
Q ss_pred ccccccchHHhhccccccEEEcCCCccc
Q 042822 409 FHLKVIAANLIASFTRLEELYMSNCFVE 436 (775)
Q Consensus 409 ~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 436 (775)
.+..+|.+.++++++|++|++++|.+.
T Consensus 89 -~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 -QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred -ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 455555544566666666666666543
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.10 E-value=3.3e-10 Score=105.77 Aligned_cols=97 Identities=24% Similarity=0.312 Sum_probs=58.8
Q ss_pred cEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCC-CcccccccCccEEEcCCCCCCC-ccc-cccCCcccEEEe
Q 042822 306 ELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSL-PSSIDLLLNLRTLCLDHGTLGD-ITI-IGELKNLEILSL 382 (775)
Q Consensus 306 r~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~l~~-p~~-i~~l~~L~~L~l 382 (775)
+.++++++.+. .+|..+ .++|++|++++|.+..+ |..++++++|++|+|++|.++. |+. ++++++|++|++
T Consensus 15 ~~l~~~~n~l~---~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 15 TLVNCQNIRLA---SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SEEECCSSCCS---SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cEEEeCCCCCC---ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence 34555555543 455433 25566666666666655 4456666666666666666666 333 466666666666
Q ss_pred cCCCCcccchh-hhccCCCCEecccCC
Q 042822 383 IGSDIVEFPEE-LGKLTKLRLLDLTNC 408 (775)
Q Consensus 383 ~~~~l~~lp~~-i~~l~~L~~L~l~~~ 408 (775)
++|.++.+|.. +..+++|++|++++|
T Consensus 89 ~~N~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 89 NDNHLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred CCCccceeCHHHhccccCCCEEEeCCC
Confidence 66666666654 666667777777666
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.02 E-value=1e-09 Score=102.04 Aligned_cols=98 Identities=26% Similarity=0.297 Sum_probs=63.8
Q ss_pred cEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCC-CcccccccCccEEEcCCCCCCC-cc-ccccCCcccEEEe
Q 042822 306 ELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSL-PSSIDLLLNLRTLCLDHGTLGD-IT-IIGELKNLEILSL 382 (775)
Q Consensus 306 r~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~l~~-p~-~i~~l~~L~~L~l 382 (775)
++++++++.+. .+|..+ .++|++|++++|.++.+ |..++.+++|++|++++|.++. |+ .+.++++|++|++
T Consensus 12 ~~l~~s~n~l~---~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 12 TTVDCSGKSLA---SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TEEECTTSCCS---SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcC---ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 45666666554 455443 25667777777777765 4556677777777777777666 33 3567777777777
Q ss_pred cCCCCcccchh-hhccCCCCEecccCCc
Q 042822 383 IGSDIVEFPEE-LGKLTKLRLLDLTNCF 409 (775)
Q Consensus 383 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 409 (775)
++|.++.+|.. +.++++|++|++++|.
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 77777766653 6677777777777763
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.98 E-value=5.4e-10 Score=116.55 Aligned_cols=57 Identities=21% Similarity=0.237 Sum_probs=38.2
Q ss_pred CCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCC-cccccccCccEEEcCC
Q 042822 302 CPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLP-SSIDLLLNLRTLCLDH 362 (775)
Q Consensus 302 ~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~ 362 (775)
|++|+.|.+.. ... .++...|.+|++|+.+++++|.+..++ ..|..+.++.++....
T Consensus 100 ~~~L~~l~L~~-~i~---~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 100 KQTLEKVILSE-KIK---NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp CTTCCC-CBCT-TCC---EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred cCCCcEEECCc-ccc---chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 77888888777 444 567777788888888888888776553 4455666666665544
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.87 E-value=4.1e-10 Score=118.83 Aligned_cols=13 Identities=0% Similarity=-0.143 Sum_probs=6.8
Q ss_pred cceeEEEEEcCCC
Q 042822 281 KKCYAISWIDSSG 293 (775)
Q Consensus 281 ~~~~~l~l~~~~~ 293 (775)
+.++.|++.+|.+
T Consensus 72 ~~L~~L~Ls~n~l 84 (372)
T 3un9_A 72 SSLRQLNLAGVRM 84 (372)
T ss_dssp TTCCEEECTTSCC
T ss_pred hhCCEEEecCCCC
Confidence 3455555555544
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.85 E-value=6.8e-09 Score=108.18 Aligned_cols=64 Identities=14% Similarity=0.147 Sum_probs=48.8
Q ss_pred ccChhhhhC--------CCcccEEEecCCCCCCCCc-ccccccCccEEEcCCCCCCC--ccccccCCcccEEEecC
Q 042822 320 NIPRSFFTG--------MRELKVVDLTNMQLFSLPS-SIDLLLNLRTLCLDHGTLGD--ITIIGELKNLEILSLIG 384 (775)
Q Consensus 320 ~l~~~~~~~--------l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~l~~--p~~i~~l~~L~~L~l~~ 384 (775)
.+|...|.+ +++|+.|++.+ .++.+++ .|.++.+|+.|++.++.+.. +..+..+.++.++....
T Consensus 83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 83 FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 567777888 99999999998 8887754 58889999999999988766 45567777777666544
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.74 E-value=1.8e-08 Score=105.85 Aligned_cols=87 Identities=18% Similarity=0.116 Sum_probs=43.5
Q ss_pred ccChhhhhCCCcccEEEecC-CCCCCCC-cccccccCccEEEcCCCCCCC--ccccccCCcccEEEecCCCCcccchhhh
Q 042822 320 NIPRSFFTGMRELKVVDLTN-MQLFSLP-SSIDLLLNLRTLCLDHGTLGD--ITIIGELKNLEILSLIGSDIVEFPEELG 395 (775)
Q Consensus 320 ~l~~~~~~~l~~L~~L~l~~-~~~~~lp-~~i~~l~~L~~L~L~~~~l~~--p~~i~~l~~L~~L~l~~~~l~~lp~~i~ 395 (775)
.+|. +..+.+|++|+|++ |.+..+| ..|++|.+|++|+|++|.+.. |..|++|++|++|+|++|.++.+|..+.
T Consensus 23 ~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 100 (347)
T 2ifg_A 23 SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV 100 (347)
T ss_dssp TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT
T ss_pred ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHc
Confidence 3444 34555555555553 5555444 345555555555555555554 2334555555555555555555554433
Q ss_pred ccCCCCEecccCC
Q 042822 396 KLTKLRLLDLTNC 408 (775)
Q Consensus 396 ~l~~L~~L~l~~~ 408 (775)
....|++|++.+|
T Consensus 101 ~~~~L~~l~l~~N 113 (347)
T 2ifg_A 101 QGLSLQELVLSGN 113 (347)
T ss_dssp CSCCCCEEECCSS
T ss_pred ccCCceEEEeeCC
Confidence 2223555555554
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.68 E-value=2.2e-07 Score=98.84 Aligned_cols=233 Identities=15% Similarity=0.151 Sum_probs=147.2
Q ss_pred ceeEEEEEcCCCCCCCCCC-CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCC-cccccccCccEEE
Q 042822 282 KCYAISWIDSSGGELPEGL-ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLP-SSIDLLLNLRTLC 359 (775)
Q Consensus 282 ~~~~l~l~~~~~~~lp~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~ 359 (775)
.+..+.+ .+.+..++... .-.+|+.+.+..+ .. .+....|.++ .|+.+.+.. .+..++ ..|.++.+|+.++
T Consensus 114 ~l~~i~i-p~~i~~I~~~aF~~~~L~~i~l~~~-i~---~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 114 GYNEIIL-PNSVKSIPKDAFRNSQIAKVVLNEG-LK---SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SCSEEEC-CTTCCEECTTTTTTCCCSEEECCTT-CC---EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CccEEEE-CCccCEehHhhcccCCccEEEeCCC-cc---EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 3444444 23444555432 2237888888765 33 5677777775 689998886 566664 5678889999999
Q ss_pred cCCCCCCC-ccccccCCcccEEEecCCCCcccch-hhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccc
Q 042822 360 LDHGTLGD-ITIIGELKNLEILSLIGSDIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEW 437 (775)
Q Consensus 360 L~~~~l~~-p~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~ 437 (775)
+.++.++. +...-.+.+|+.+.+.. .++.++. .+.++.+|+.+.+..+ +..++..+|.+ .+|+.+.+..+ +.
T Consensus 187 l~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~-i~- 260 (401)
T 4fdw_A 187 LSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG-VT- 260 (401)
T ss_dssp CTTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT-CC-
T ss_pred cCCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC-cc-
Confidence 99888877 44333368899999874 4776665 4778889999998863 67788877777 78999888433 22
Q ss_pred eecccCCccccccccccccCCCCCCCEEEEEeeCCC-----CCCCccccccccceEEEecCCCCCCcccccccccccccc
Q 042822 438 KVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDN-----ALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRS 512 (775)
Q Consensus 438 ~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~ 512 (775)
.++ ...+.++++|+.+.+..+... .++...
T Consensus 261 ~I~------------~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a--------------------------------- 295 (401)
T 4fdw_A 261 NIA------------SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC--------------------------------- 295 (401)
T ss_dssp EEC------------TTTTTTCTTCCEEEEESSCCCCCTTCEECTTT---------------------------------
T ss_pred EEC------------hhHhhCCCCCCEEEeCCccccCCcccEECHHH---------------------------------
Confidence 111 256778889999998765443 122111
Q ss_pred ccccccccccceEEEeccCcccccccccccccceEEeecccCCcccccccccccccccCcEEEeecC
Q 042822 513 HFLILDHQSLRMLKLKLNCKTICSRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNN 579 (775)
Q Consensus 513 ~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 579 (775)
+.++++|+.+.+...........+..+++|+.+.+.++ ++.+.... ..++ +|+.+.+.++
T Consensus 296 ---F~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~a-F~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 296 ---LEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPAN--VTQINFSA-FNNT-GIKEVKVEGT 355 (401)
T ss_dssp ---TTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTT--CCEECTTS-SSSS-CCCEEEECCS
T ss_pred ---hhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECcc--ccEEcHHh-CCCC-CCCEEEEcCC
Confidence 11255666666653322222333446777777777543 44443322 2345 7888888765
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.66 E-value=1.3e-06 Score=92.95 Aligned_cols=258 Identities=13% Similarity=0.129 Sum_probs=170.9
Q ss_pred CCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCCc-ccccccCccEEEcCCCCCCC--ccccccCCccc
Q 042822 302 CPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLPS-SIDLLLNLRTLCLDHGTLGD--ITIIGELKNLE 378 (775)
Q Consensus 302 ~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~l~~--p~~i~~l~~L~ 378 (775)
+..++.+.+..+- . .++...|.++ +|+.+.+..+ ++.++. .|.+ .+|+.+.+.. .++. ...+.+|.+|+
T Consensus 112 ~~~l~~i~ip~~i-~---~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 112 LKGYNEIILPNSV-K---SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp CSSCSEEECCTTC-C---EECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred cCCccEEEECCcc-C---EehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCC
Confidence 4566777766542 2 5677777876 7999999876 666654 4555 4799999986 5655 46688999999
Q ss_pred EEEecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccceecccCCccccccccccccCC
Q 042822 379 ILSLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMP 458 (775)
Q Consensus 379 ~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 458 (775)
.+++.+++++.+|...-...+|+.+.+.. .+..++..+|.++++|+.+.+..+- . .++ ...+.+
T Consensus 184 ~l~l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~l-~-~I~------------~~aF~~ 247 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPENV-S-TIG------------QEAFRE 247 (401)
T ss_dssp EEECTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTTC-C-EEC------------TTTTTT
T ss_pred eeecCCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCCCc-c-Ccc------------cccccc
Confidence 99999999999988765579999999985 4788888889999999999997642 1 121 123334
Q ss_pred CCCCCEEEEEeeCCCCCCCccccccccceEEEecCCCCCCccccccccccccccccccccccccceEEEeccCcc-----
Q 042822 459 LPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNCKT----- 533 (775)
Q Consensus 459 l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----- 533 (775)
.+|+.+.+. +....++... +.++++|+.+.+.++...
T Consensus 248 -~~L~~i~lp-~~i~~I~~~a------------------------------------F~~c~~L~~l~l~~~~~~~~~~~ 289 (401)
T 4fdw_A 248 -SGITTVKLP-NGVTNIASRA------------------------------------FYYCPELAEVTTYGSTFNDDPEA 289 (401)
T ss_dssp -CCCSEEEEE-TTCCEECTTT------------------------------------TTTCTTCCEEEEESSCCCCCTTC
T ss_pred -CCccEEEeC-CCccEEChhH------------------------------------hhCCCCCCEEEeCCccccCCccc
Confidence 578888873 2333332211 122777888877664432
Q ss_pred -cccccccccccceEEeecccCCcccccccccccccccCcEEEeecCCCccccccCCCcccCCcccccceeecccccccc
Q 042822 534 -ICSRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLK 612 (775)
Q Consensus 534 -~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~ 612 (775)
..+..+..+++|+.+.+.+ .++.++.. ...++++|+.+.+.. +++.+... ....+ +|+.+.+.+. .+.
T Consensus 290 ~I~~~aF~~c~~L~~l~l~~--~i~~I~~~-aF~~c~~L~~l~lp~--~l~~I~~~----aF~~~-~L~~l~l~~n-~~~ 358 (401)
T 4fdw_A 290 MIHPYCLEGCPKLARFEIPE--SIRILGQG-LLGGNRKVTQLTIPA--NVTQINFS----AFNNT-GIKEVKVEGT-TPP 358 (401)
T ss_dssp EECTTTTTTCTTCCEECCCT--TCCEECTT-TTTTCCSCCEEEECT--TCCEECTT----SSSSS-CCCEEEECCS-SCC
T ss_pred EECHHHhhCCccCCeEEeCC--ceEEEhhh-hhcCCCCccEEEECc--cccEEcHH----hCCCC-CCCEEEEcCC-CCc
Confidence 2234455899999999984 35555433 345688999999954 35555211 22345 8999999875 334
Q ss_pred cccccccCcccc-cCCCeEEecc
Q 042822 613 TICVDRLSTESF-AELRTMKVEN 634 (775)
Q Consensus 613 ~~~~~~~~~~~~-~~L~~L~l~~ 634 (775)
.+.. .....+ .+++.|.+-.
T Consensus 359 ~l~~--~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 359 QVFE--KVWYGFPDDITVIRVPA 379 (401)
T ss_dssp BCCC--SSCCCSCTTCCEEEECG
T ss_pred cccc--ccccCCCCCccEEEeCH
Confidence 3422 122334 3677777754
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.63 E-value=5.1e-08 Score=102.43 Aligned_cols=97 Identities=21% Similarity=0.194 Sum_probs=48.3
Q ss_pred EecCC-CCCCCCcccccccCccEEEcCC-CCCCC-c-cccccCCcccEEEecCCCCcccch-hhhccCCCCEecccCCcc
Q 042822 336 DLTNM-QLFSLPSSIDLLLNLRTLCLDH-GTLGD-I-TIIGELKNLEILSLIGSDIVEFPE-ELGKLTKLRLLDLTNCFH 410 (775)
Q Consensus 336 ~l~~~-~~~~lp~~i~~l~~L~~L~L~~-~~l~~-p-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~ 410 (775)
+++++ .++.+|. ++.+.+|++|+|++ |.+.. + ..+++|.+|++|+|++|.++.+|. .|++|++|++|+|++| .
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~ 91 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-A 91 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-C
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-c
Confidence 44444 4555555 55555555555553 55544 2 335555555555555555554433 3455555555555554 3
Q ss_pred ccccchHHhhccccccEEEcCCCcc
Q 042822 411 LKVIAANLIASFTRLEELYMSNCFV 435 (775)
Q Consensus 411 l~~~p~~~l~~L~~L~~L~l~~~~~ 435 (775)
+..+|...+..++ |++|++.+|.+
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred cceeCHHHcccCC-ceEEEeeCCCc
Confidence 4445444333333 55555555543
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.62 E-value=5e-09 Score=110.54 Aligned_cols=162 Identities=20% Similarity=0.163 Sum_probs=100.4
Q ss_pred CCCccEEEcccCCCCCcc--ccChhhhhCCCcccEEEecCCCCCC--CCcccccccCccEEEcCCCCCCC--cccc----
Q 042822 302 CPQLELLLLSSKHSSVDV--NIPRSFFTGMRELKVVDLTNMQLFS--LPSSIDLLLNLRTLCLDHGTLGD--ITII---- 371 (775)
Q Consensus 302 ~~~Lr~L~l~~~~~~~~~--~l~~~~~~~l~~L~~L~l~~~~~~~--lp~~i~~l~~L~~L~L~~~~l~~--p~~i---- 371 (775)
+++|+.|++++|.+.... .+...+....++|++|+|++|.++. +..-...+.+|++|+|++|.++. ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 456778888887765210 0111111123678888888887762 22223346678888888887765 2333
Q ss_pred -ccCCcccEEEecCCCCcc-----cchhhhccCCCCEecccCCcccccc-----chHHhhccccccEEEcCCCcccceec
Q 042822 372 -GELKNLEILSLIGSDIVE-----FPEELGKLTKLRLLDLTNCFHLKVI-----AANLIASFTRLEELYMSNCFVEWKVE 440 (775)
Q Consensus 372 -~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~l~~~-----p~~~l~~L~~L~~L~l~~~~~~~~~~ 440 (775)
...++|++|++++|.++. ++..+..+++|++|++++|. ++.. +.. +...++|++|++++|.+...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~i~~~-- 226 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQ-LDRNRQLQELNVAYNGAGDT-- 226 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHH-GGGCSCCCEEECCSSCCCHH--
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHH-HhcCCCcCeEECCCCCCCHH--
Confidence 245678888888887763 45556777888888888874 4432 222 56677888888888876521
Q ss_pred ccCCccccccccccccCCCCCCCEEEEEeeCCCC
Q 042822 441 DEGSSSKRSKASLDELMPLPRLTTLEIAVENDNA 474 (775)
Q Consensus 441 ~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~ 474 (775)
........+...++|++|++++|.+..
T Consensus 227 -------g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 227 -------AALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp -------HHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred -------HHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 112344566677778888888777654
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.38 E-value=4.3e-07 Score=94.81 Aligned_cols=137 Identities=20% Similarity=0.238 Sum_probs=77.2
Q ss_pred hhhhCCCcccEEEecCCCCCCCCcccccccCccEEEcCCCCCCC--ccccc--cCCcccEEEecCC--------CCcccc
Q 042822 324 SFFTGMRELKVVDLTNMQLFSLPSSIDLLLNLRTLCLDHGTLGD--ITIIG--ELKNLEILSLIGS--------DIVEFP 391 (775)
Q Consensus 324 ~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~--p~~i~--~l~~L~~L~l~~~--------~l~~lp 391 (775)
.++..+++|+.|+++++.-..++. +. +.+|++|++..|.+.. ...++ .+++|++|+|+.+ .+..+.
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 445667777777777763234444 32 6777777777776644 33333 5777777777421 121222
Q ss_pred hhh--hccCCCCEecccCCccccccchHHhh---ccccccEEEcCCCcccceecccCCccccccccccccCCCCCCCEEE
Q 042822 392 EEL--GKLTKLRLLDLTNCFHLKVIAANLIA---SFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLE 466 (775)
Q Consensus 392 ~~i--~~l~~L~~L~l~~~~~l~~~p~~~l~---~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~ 466 (775)
..+ ..+++|++|++.+|......+.. +. .+++|++|+++.|.+...- .......+.++++|+.|+
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~-la~a~~~~~L~~LdLs~n~L~d~G---------~~~L~~~L~~l~~L~~L~ 313 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEM-FLESDILPQLETMDISAGVLTDEG---------ARLLLDHVDKIKHLKFIN 313 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHH-HHHCSSGGGCSEEECCSSCCBHHH---------HHHHHTTHHHHTTCSEEE
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHH-HHhCccCCCCCEEECCCCCCChHH---------HHHHHhhcccCCcceEEE
Confidence 222 24677888888776433222222 22 4677888888777654211 112233445667778887
Q ss_pred EEeeCC
Q 042822 467 IAVEND 472 (775)
Q Consensus 467 l~~~~~ 472 (775)
++.|.+
T Consensus 314 L~~n~i 319 (362)
T 2ra8_A 314 MKYNYL 319 (362)
T ss_dssp CCSBBC
T ss_pred CCCCcC
Confidence 776643
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.35 E-value=2.3e-05 Score=83.59 Aligned_cols=301 Identities=12% Similarity=0.131 Sum_probs=139.0
Q ss_pred CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCC-cccccccCccEEEcCCCCCCC--ccccccCCcc
Q 042822 301 ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLP-SSIDLLLNLRTLCLDHGTLGD--ITIIGELKNL 377 (775)
Q Consensus 301 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~l~~--p~~i~~l~~L 377 (775)
+|.+|+.+.+..+ .. .+....|.+|.+|+.+++..+ ++.++ ..+.++.+|+.+.+..+ +.. ...+.++..+
T Consensus 69 ~c~~L~~i~lp~~-i~---~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 69 GCRKVTEIKIPST-VR---EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK 142 (394)
T ss_dssp TCTTEEEEECCTT-CC---EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred CCCCceEEEeCCC-cc---CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence 6778888887643 22 566677788888888887644 44443 34556666666555432 111 1223333222
Q ss_pred cEEEecCCCCcccc-hhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccceecccCCcccccccccccc
Q 042822 378 EILSLIGSDIVEFP-EELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDEL 456 (775)
Q Consensus 378 ~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l 456 (775)
...... .+..+. ..+.++.+|+.+.+.++ +..++..++.++.+|+.+.+..+- . .++ -..+
T Consensus 143 ~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~~-~-~I~------------~~~F 204 (394)
T 4fs7_A 143 EITIPE--GVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRNL-K-IIR------------DYCF 204 (394)
T ss_dssp EEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTTC-C-EEC------------TTTT
T ss_pred ccccCc--cccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCCc-e-EeC------------chhh
Confidence 211111 111111 23455555555555432 334554445555555555554321 0 010 0222
Q ss_pred CCCCCCCEEEEEeeCCCCCCC-ccccccccceEEEecCCCCCCccccccccccccccccccccccccceEEEeccCcccc
Q 042822 457 MPLPRLTTLEIAVENDNALPE-GFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNCKTIC 535 (775)
Q Consensus 457 ~~l~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 535 (775)
.++..|+.+.+..+. ..+.. .....+|+.+.+.... ..+ ....+..+.+++.+.+........
T Consensus 205 ~~~~~L~~i~~~~~~-~~i~~~~~~~~~l~~i~ip~~~----~~i-----------~~~~f~~~~~l~~~~~~~~~~~i~ 268 (394)
T 4fs7_A 205 AECILLENMEFPNSL-YYLGDFALSKTGVKNIIIPDSF----TEL-----------GKSVFYGCTDLESISIQNNKLRIG 268 (394)
T ss_dssp TTCTTCCBCCCCTTC-CEECTTTTTTCCCCEEEECTTC----CEE-----------CSSTTTTCSSCCEEEECCTTCEEC
T ss_pred ccccccceeecCCCc-eEeehhhcccCCCceEEECCCc----eec-----------ccccccccccceeEEcCCCcceee
Confidence 333333333221110 00000 0011223332221000 000 000111255666666654333222
Q ss_pred cccccccccceEEeecccCCcccccccccccccccCcEEEeecCCCccccccCCCcccCCcccccceeeccccccccccc
Q 042822 536 SRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKTIC 615 (775)
Q Consensus 536 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~ 615 (775)
......++.++.+...... + .......+.+|+.+.+.+ +++.|.+. ....+.+|+.+.+.+ .++.+.
T Consensus 269 ~~~F~~~~~l~~~~~~~~~----i-~~~~F~~~~~L~~i~l~~--~i~~I~~~----aF~~c~~L~~i~lp~--~v~~I~ 335 (394)
T 4fs7_A 269 GSLFYNCSGLKKVIYGSVI----V-PEKTFYGCSSLTEVKLLD--SVKFIGEE----AFESCTSLVSIDLPY--LVEEIG 335 (394)
T ss_dssp SCTTTTCTTCCEEEECSSE----E-CTTTTTTCTTCCEEEECT--TCCEECTT----TTTTCTTCCEECCCT--TCCEEC
T ss_pred ccccccccccceeccCcee----e-cccccccccccccccccc--ccceechh----hhcCCCCCCEEEeCC--cccEEh
Confidence 3333356666666554321 1 111234467788877753 34444211 223456777777753 355553
Q ss_pred ccccCcccccCCCeEEeccCCCCCccccchhhcCCCCccEEEEe
Q 042822 616 VDRLSTESFAELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVI 659 (775)
Q Consensus 616 ~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~ 659 (775)
. ..+..+.+|+.+.+.. +++.+.. ..+.++++|+.+.+.
T Consensus 336 ~--~aF~~c~~L~~i~lp~--~l~~I~~-~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 336 K--RSFRGCTSLSNINFPL--SLRKIGA-NAFQGCINLKKVELP 374 (394)
T ss_dssp T--TTTTTCTTCCEECCCT--TCCEECT-TTBTTCTTCCEEEEE
T ss_pred H--HhccCCCCCCEEEECc--cccEehH-HHhhCCCCCCEEEEC
Confidence 2 2334567888887754 3666654 356778888888874
No 153
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.25 E-value=4.5e-05 Score=79.78 Aligned_cols=211 Identities=17% Similarity=0.132 Sum_probs=118.7
Q ss_pred cHHHHHHHHHHHHhcCCcEEEEEEcCCCchh---------hhhccccCCCCCCCcEEEEEeCChHHHhh-----------
Q 042822 15 TEHARASMLYAQLKKSRKILVILDNVWTELH---------LKDVGIPFGDEHKGCKVLLTTRGRDLLSR----------- 74 (775)
Q Consensus 15 ~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~---------~~~l~~~~~~~~~gs~iivTTR~~~v~~~----------- 74 (775)
+..+....+.+...+.++++||+||++.... +..+.... +...+.++|+|++...+...
T Consensus 112 ~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l 190 (350)
T 2qen_A 112 SLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY-DSLPNLKIILTGSEVGLLHDFLKITDYESPL 190 (350)
T ss_dssp CHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH-HHCTTEEEEEEESSHHHHHHHHCTTCTTSTT
T ss_pred hHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH-HhcCCeEEEEECCcHHHHHHHHhhcCCCCcc
Confidence 3445555665555422499999999987542 22222211 11246789999988654221
Q ss_pred cCC-CceEEcCCCCHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHhCCCchhHHHHHHHHhcC-CcHHHHHHHHHHhcCC
Q 042822 75 MGS-EADVRMDILNEEEAWRLFEVKLGNDGLIRRMKSTATQIVKQCGGLPIALEPIAKALRNK-TESECWKNALHELRMP 152 (775)
Q Consensus 75 ~~~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~-~~~~~w~~~l~~l~~~ 152 (775)
.+. ...+++.+|+.+|+.+++........... -.+.+..|.+.++|.|+++..++..+... .......++.+
T Consensus 191 ~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~-~~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~----- 264 (350)
T 2qen_A 191 YGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV-PENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLE----- 264 (350)
T ss_dssp TTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHH-----
T ss_pred ccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHH-----
Confidence 111 24799999999999999987652211111 13467899999999999999998765432 21111111111
Q ss_pred CcCcchhhhhhHHHHHHhhHhcc---CchhHHHHHHhcCCCCCCCChhhHHHHHhhccccccccHHHHHHHHHHHHHHHH
Q 042822 153 TENNFHRELGKAYTAIKLSYDAL---KGEQLKKIFQLCSLMPKSFFASDLFKYCIGLGIFRGINMEDARNTLYTLVHELK 229 (775)
Q Consensus 153 ~~~~~~~~~~~~~~~l~~sy~~L---~~~~lk~cf~~~~~fp~~~~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~L~ 229 (775)
.+...+.-.+..+ ++. .+..+..+|. .......+.....+. . .+.+. .....+++.|.
T Consensus 265 ----------~~~~~~~~~l~~l~~~~~~-~~~~l~~la~--g~~~~~~l~~~~~~~-~-~~~~~----~~~~~~l~~L~ 325 (350)
T 2qen_A 265 ----------VAKGLIMGELEELRRRSPR-YVDILRAIAL--GYNRWSLIRDYLAVK-G-TKIPE----PRLYALLENLK 325 (350)
T ss_dssp ----------HHHHHHHHHHHHHHHHCHH-HHHHHHHHHT--TCCSHHHHHHHHHHT-T-CCCCH----HHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHhCChh-HHHHHHHHHh--CCCCHHHHHHHHHHH-h-CCCCH----HHHHHHHHHHH
Confidence 1111111122222 565 5888888887 222333443332211 0 01121 22345688899
Q ss_pred HccceecccccceEEe-hHHHHHHH
Q 042822 230 DSCLLLEGYSCREFSM-HDVVHDVA 253 (775)
Q Consensus 230 ~~sl~~~~~~~~~~~m-Hdlv~~l~ 253 (775)
+.+++... .+.|.+ |.+++++.
T Consensus 326 ~~gli~~~--~~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 326 KMNWIVEE--DNTYKIADPVVATVL 348 (350)
T ss_dssp HTTSEEEE--TTEEEESSHHHHHHH
T ss_pred hCCCEEec--CCEEEEecHHHHHHH
Confidence 99999764 245654 77887764
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.23 E-value=1.2e-05 Score=85.76 Aligned_cols=285 Identities=12% Similarity=0.058 Sum_probs=151.0
Q ss_pred ccChhhhhCCCcccEEEecCCCCCCCC-cccccccCccEEEcCCCCCCC--ccccccCCcccEEEecCCCCcccch-hhh
Q 042822 320 NIPRSFFTGMRELKVVDLTNMQLFSLP-SSIDLLLNLRTLCLDHGTLGD--ITIIGELKNLEILSLIGSDIVEFPE-ELG 395 (775)
Q Consensus 320 ~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~l~~--p~~i~~l~~L~~L~l~~~~l~~lp~-~i~ 395 (775)
.+....|.++.+|+.+.+.. .++.++ ..|.++.+|+.+++..+ ++. ...+.++.+|+.+.+..+ +..+.. .+.
T Consensus 61 sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~ 137 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFK 137 (394)
T ss_dssp EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeee
Confidence 46667789999999999974 466664 45788999999999754 444 345777788887666543 443332 344
Q ss_pred ccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccceecccCCccccccccccccCCCCCCCEEEEEeeCCCCC
Q 042822 396 KLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDELMPLPRLTTLEIAVENDNAL 475 (775)
Q Consensus 396 ~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~ 475 (775)
++..+...... ....+...++.++++|+.+.+..+... ++ -..+..+.+|+.+.+..+ ...+
T Consensus 138 ~~~~~~~~~~~---~~~~i~~~aF~~c~~L~~i~l~~~~~~--I~------------~~~F~~c~~L~~i~l~~~-~~~I 199 (394)
T 4fs7_A 138 GCDFKEITIPE---GVTVIGDEAFATCESLEYVSLPDSMET--LH------------NGLFSGCGKLKSIKLPRN-LKII 199 (394)
T ss_dssp TCCCSEEECCT---TCCEECTTTTTTCTTCCEEECCTTCCE--EC------------TTTTTTCTTCCBCCCCTT-CCEE
T ss_pred cccccccccCc---cccccchhhhcccCCCcEEecCCccce--ec------------cccccCCCCceEEEcCCC-ceEe
Confidence 44333333222 334555666888999999988654211 11 134556677777665422 2222
Q ss_pred CCcc--ccccccceEEEecCCCCCCccccccccccccccccccccccccceEEEeccCcccccccccccccceEEeeccc
Q 042822 476 PEGF--FVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNCKTICSRKLQGIRKVEYLCLDKF 553 (775)
Q Consensus 476 ~~~~--~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~ 553 (775)
+... ....|+.+.+.... ..+ ........+|+.+.+..............+..|+.+.+...
T Consensus 200 ~~~~F~~~~~L~~i~~~~~~----~~i------------~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 200 RDYCFAECILLENMEFPNSL----YYL------------GDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNN 263 (394)
T ss_dssp CTTTTTTCTTCCBCCCCTTC----CEE------------CTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCT
T ss_pred CchhhccccccceeecCCCc----eEe------------ehhhcccCCCceEEECCCceecccccccccccceeEEcCCC
Confidence 2221 12333333221100 000 00011145666666654322222233335667777776543
Q ss_pred CCcccccccccccccccCcEEEeecCCCccccccCCCcccCCcccccceeecccccccccccccccCcccccCCCeEEec
Q 042822 554 QGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKTICVDRLSTESFAELRTMKVE 633 (775)
Q Consensus 554 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~ 633 (775)
. ..+... ....++.++.+...... +. . .....+.+|+.+.+.+ +++.+.. .....+++|+.++|.
T Consensus 264 ~--~~i~~~-~F~~~~~l~~~~~~~~~----i~-~---~~F~~~~~L~~i~l~~--~i~~I~~--~aF~~c~~L~~i~lp 328 (394)
T 4fs7_A 264 K--LRIGGS-LFYNCSGLKKVIYGSVI----VP-E---KTFYGCSSLTEVKLLD--SVKFIGE--EAFESCTSLVSIDLP 328 (394)
T ss_dssp T--CEECSC-TTTTCTTCCEEEECSSE----EC-T---TTTTTCTTCCEEEECT--TCCEECT--TTTTTCTTCCEECCC
T ss_pred c--ceeecc-ccccccccceeccCcee----ec-c---cccccccccccccccc--ccceech--hhhcCCCCCCEEEeC
Confidence 2 222111 12335556655543321 10 0 1223456777777753 4555532 233456788888875
Q ss_pred cCCCCCccccchhhcCCCCccEEEEe
Q 042822 634 NCDELSNIFVLSTTKCLPSLQRIAVI 659 (775)
Q Consensus 634 ~C~~L~~l~~~~~~~~l~~L~~L~l~ 659 (775)
+ .++.+.. ..+.++.+|+.+.+.
T Consensus 329 ~--~v~~I~~-~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 329 Y--LVEEIGK-RSFRGCTSLSNINFP 351 (394)
T ss_dssp T--TCCEECT-TTTTTCTTCCEECCC
T ss_pred C--cccEEhH-HhccCCCCCCEEEEC
Confidence 3 4666644 355677778887763
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.17 E-value=1.7e-06 Score=90.36 Aligned_cols=138 Identities=14% Similarity=0.126 Sum_probs=74.0
Q ss_pred ccccceEEEeccCcccccccccccccceEEeecccCCcccccccccccccccCcEEEeecCCC-------ccccccCCCc
Q 042822 519 HQSLRMLKLKLNCKTICSRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPD-------LLFIVDSREI 591 (775)
Q Consensus 519 ~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-------l~~i~~~~~~ 591 (775)
+++|+.|.+.++.....+. + .+++|++|++..|..............+|+|+.|+++.+.+ ++.+. ..
T Consensus 171 ~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~---~~ 245 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR---PL 245 (362)
T ss_dssp CTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG---GG
T ss_pred CCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH---HH
Confidence 6777777777653333333 2 37788888887664322221121223578888888763221 11100 01
Q ss_pred ccCCcccccceeecccccccccccccccCcccccCCCeEEeccCCCCCcccc---chhhcCCCCccEEEEeccc
Q 042822 592 VDCDAFPLLELLSLQNLINLKTICVDRLSTESFAELRTMKVENCDELSNIFV---LSTTKCLPSLQRIAVIKCN 662 (775)
Q Consensus 592 ~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~---~~~~~~l~~L~~L~l~~C~ 662 (775)
.....||+|+.|.+.+|...............+|+|++|+++. +.+++... ...+.++++|+.|++++|.
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 1224578888888877654322211111123578888888865 35554211 0133557788888887664
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.16 E-value=1.6e-06 Score=79.09 Aligned_cols=94 Identities=16% Similarity=0.203 Sum_probs=62.6
Q ss_pred ccChhhhhCCCcccEEEecCCCCCC-CCcccccccCccEEEcCCCC-CCC--ccccccC----CcccEEEecCC-CCc-c
Q 042822 320 NIPRSFFTGMRELKVVDLTNMQLFS-LPSSIDLLLNLRTLCLDHGT-LGD--ITIIGEL----KNLEILSLIGS-DIV-E 389 (775)
Q Consensus 320 ~l~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~L~~~~-l~~--p~~i~~l----~~L~~L~l~~~-~l~-~ 389 (775)
.+|... ..-..|+.||+++|.++. --..+..+++|++|+|++|. +++ ...++.+ ++|++|++++| +++ .
T Consensus 52 ~LP~~~-~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 52 HLPTGP-LDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp GSCCCS-TTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred cCCccc-CCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 455432 233478889999888772 23446778888888888885 655 5556654 36888888887 566 2
Q ss_pred cchhhhccCCCCEecccCCcccccc
Q 042822 390 FPEELGKLTKLRLLDLTNCFHLKVI 414 (775)
Q Consensus 390 lp~~i~~l~~L~~L~l~~~~~l~~~ 414 (775)
--..+.++++|++|++++|..++..
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred HHHHHhcCCCCCEEECCCCCCCCch
Confidence 2234667788888888888766653
No 157
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.10 E-value=4.6e-05 Score=79.89 Aligned_cols=205 Identities=15% Similarity=0.164 Sum_probs=114.3
Q ss_pred HHHHHHhc-C-CcEEEEEEcCCCch-----hhhhccccCCCCCCCcEEEEEeCChHHHh-h----------cCC-CceEE
Q 042822 22 MLYAQLKK-S-RKILVILDNVWTEL-----HLKDVGIPFGDEHKGCKVLLTTRGRDLLS-R----------MGS-EADVR 82 (775)
Q Consensus 22 ~l~~~l~~-~-kr~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~iivTTR~~~v~~-~----------~~~-~~~~~ 82 (775)
.+.+.+.+ . ++++||+||++... +|..+...+.+...+.++|+|+|...... . .+. ...+.
T Consensus 126 ~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~ 205 (357)
T 2fna_A 126 NLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVE 205 (357)
T ss_dssp HHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEE
T ss_pred HHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceee
Confidence 34444442 1 49999999997642 22221112212224678999999875422 1 111 25799
Q ss_pred cCCCCHHHHHHHHHHHhCC-CCCcchhhHHHHHHHHHhCCCchhHHHHHHHHhcCCcHHHHHH-HHHHhcCCCcCcchhh
Q 042822 83 MDILNEEEAWRLFEVKLGN-DGLIRRMKSTATQIVKQCGGLPIALEPIAKALRNKTESECWKN-ALHELRMPTENNFHRE 160 (775)
Q Consensus 83 l~~L~~~~~~~Lf~~~a~~-~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~~w~~-~l~~l~~~~~~~~~~~ 160 (775)
+.+|+.+|+.+++...++. ....++ ...|++.|+|.|+++..++..+........|-. +.+. ...
T Consensus 206 l~~l~~~e~~~~l~~~~~~~~~~~~~----~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~- 272 (357)
T 2fna_A 206 LKPFSREEAIEFLRRGFQEADIDFKD----YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEY--------AKK- 272 (357)
T ss_dssp ECCCCHHHHHHHHHHHHHHHTCCCCC----HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHH--------HHH-
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCc----HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHH--------HHH-
Confidence 9999999999999886521 111111 178999999999999999887654322222211 1111 000
Q ss_pred hhhHHHHHH-hhH--hccCchhHHHHHHhcCCCCCCCChhhHHHHHh-hccccccccHHHHHHHHHHHHHHHHHccceec
Q 042822 161 LGKAYTAIK-LSY--DALKGEQLKKIFQLCSLMPKSFFASDLFKYCI-GLGIFRGINMEDARNTLYTLVHELKDSCLLLE 236 (775)
Q Consensus 161 ~~~~~~~l~-~sy--~~L~~~~lk~cf~~~~~fp~~~~~~~li~~w~-a~g~i~~~~~~~~~~~~~~~~~~L~~~sl~~~ 236 (775)
.+...+. +.+ ..+++. .+..+..+|.-+ ....+..... ..|. ..+. .....+++.|++.+++..
T Consensus 273 --~~~~~l~~~~~~~~~l~~~-~~~~l~~la~g~---~~~~l~~~~~~~~g~--~~~~----~~~~~~L~~L~~~gli~~ 340 (357)
T 2fna_A 273 --LILKEFENFLHGREIARKR-YLNIMRTLSKCG---KWSDVKRALELEEGI--EISD----SEIYNYLTQLTKHSWIIK 340 (357)
T ss_dssp --HHHHHHHHHHTTCGGGHHH-HHHHHHHHTTCB---CHHHHHHHHHHHHCS--CCCH----HHHHHHHHHHHHTTSEEE
T ss_pred --HHHHHHHHHhhccccccHH-HHHHHHHHHcCC---CHHHHHHHHHHhcCC--CCCH----HHHHHHHHHHHhCCCEEe
Confidence 1111111 111 157776 588888888722 3333322110 1120 0111 234456888999999976
Q ss_pred ccccceEE-ehHHHHHHH
Q 042822 237 GYSCREFS-MHDVVHDVA 253 (775)
Q Consensus 237 ~~~~~~~~-mHdlv~~l~ 253 (775)
.. +.|+ .|++++++.
T Consensus 341 ~~--~~y~f~~~~~~~~l 356 (357)
T 2fna_A 341 EG--EKYCPSEPLISLAF 356 (357)
T ss_dssp SS--SCEEESSHHHHHHT
T ss_pred cC--CEEEecCHHHHHhh
Confidence 53 4566 478888753
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.08 E-value=2.7e-06 Score=79.87 Aligned_cols=109 Identities=17% Similarity=0.107 Sum_probs=62.1
Q ss_pred hhCCCcccEEEecCC-CCC-----CCCcccccccCccEEEcCCCCCCC--c----cccccCCcccEEEecCCCCcc----
Q 042822 326 FTGMRELKVVDLTNM-QLF-----SLPSSIDLLLNLRTLCLDHGTLGD--I----TIIGELKNLEILSLIGSDIVE---- 389 (775)
Q Consensus 326 ~~~l~~L~~L~l~~~-~~~-----~lp~~i~~l~~L~~L~L~~~~l~~--p----~~i~~l~~L~~L~l~~~~l~~---- 389 (775)
+...+.|++|+|++| .+. .+...+...++|++|+|++|.+.. . ..+...++|++|+|++|.+..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 455666666666666 554 133444555666777777666654 1 223444667777777766652
Q ss_pred -cchhhhccCCCCEecc--cCCccccc-----cchHHhhccccccEEEcCCCccc
Q 042822 390 -FPEELGKLTKLRLLDL--TNCFHLKV-----IAANLIASFTRLEELYMSNCFVE 436 (775)
Q Consensus 390 -lp~~i~~l~~L~~L~l--~~~~~l~~-----~p~~~l~~L~~L~~L~l~~~~~~ 436 (775)
+...+...++|++|++ ++| .++. +... +...++|++|++++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~-L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANM-LEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHH-HHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHH-HHhCCCcCEEeccCCCCC
Confidence 3445556667777777 555 3332 1222 445567777777776543
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.05 E-value=1.6e-06 Score=79.12 Aligned_cols=41 Identities=12% Similarity=0.240 Sum_probs=24.0
Q ss_pred cCCCeEEeccCCCCCccccchhhcCCCCccEEEEecccchHH
Q 042822 625 AELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKE 666 (775)
Q Consensus 625 ~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~~L~~ 666 (775)
++|++|+|++|+++++-.. ..+..+++|++|+|++|+.++.
T Consensus 114 ~~L~~L~Ls~C~~ITD~Gl-~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 114 KSMLEMEIISCGNVTDKGI-IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHCCEEEEESCTTCCHHHH-HHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCCEEEcCCCCcCCHHHH-HHHhcCCCCCEEECCCCCCCCc
Confidence 4566666666666665322 2334566666666666665553
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.92 E-value=6e-06 Score=77.47 Aligned_cols=109 Identities=14% Similarity=0.111 Sum_probs=82.3
Q ss_pred CCCCccEEEcccC-CCCCcc-ccChhhhhCCCcccEEEecCCCCCC-----CCcccccccCccEEEcCCCCCCC------
Q 042822 301 ECPQLELLLLSSK-HSSVDV-NIPRSFFTGMRELKVVDLTNMQLFS-----LPSSIDLLLNLRTLCLDHGTLGD------ 367 (775)
Q Consensus 301 ~~~~Lr~L~l~~~-~~~~~~-~l~~~~~~~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~L~~~~l~~------ 367 (775)
..+.|++|++++| .+...+ ......+...+.|++|+|++|.+.. +...+...++|++|+|++|.+..
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 5678999999988 665321 1112234677899999999999872 44556667889999999999876
Q ss_pred ccccccCCcccEEEe--cCCCCcc-----cchhhhccCCCCEecccCCc
Q 042822 368 ITIIGELKNLEILSL--IGSDIVE-----FPEELGKLTKLRLLDLTNCF 409 (775)
Q Consensus 368 p~~i~~l~~L~~L~l--~~~~l~~-----lp~~i~~l~~L~~L~l~~~~ 409 (775)
...+...++|++|++ ++|.+.. +...+...++|++|++++|.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 245677789999999 8888873 45566777999999999983
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.86 E-value=1.6e-05 Score=78.47 Aligned_cols=62 Identities=29% Similarity=0.388 Sum_probs=37.2
Q ss_pred hCCCcccEEEecCCCCCCC---CcccccccCccEEEcCCCCCCCccccccCC--cccEEEecCCCCc
Q 042822 327 TGMRELKVVDLTNMQLFSL---PSSIDLLLNLRTLCLDHGTLGDITIIGELK--NLEILSLIGSDIV 388 (775)
Q Consensus 327 ~~l~~L~~L~l~~~~~~~l---p~~i~~l~~L~~L~L~~~~l~~p~~i~~l~--~L~~L~l~~~~l~ 388 (775)
.++++|++|+|++|.++.+ |..++.+++|++|+|++|.++....+..+. +|++|++++|.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCc
Confidence 4566777777777776644 344556666666666666666544444444 5666666666554
No 162
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.84 E-value=0.00013 Score=78.27 Aligned_cols=218 Identities=16% Similarity=0.080 Sum_probs=117.2
Q ss_pred hHHHHhCCCCc--cccHHHHHHHHHHHHhc-CCcEEEEEEcCCCch--------hhhhccccCCCC---C--CCcEEEEE
Q 042822 2 EIAEQIGLTLD--KETEHARASMLYAQLKK-SRKILVILDNVWTEL--------HLKDVGIPFGDE---H--KGCKVLLT 65 (775)
Q Consensus 2 ~i~~~l~~~~~--~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~--------~~~~l~~~~~~~---~--~gs~iivT 65 (775)
+|++++|.... ..+..+....+.+.+.+ +++++||+||+|... .+..+...+... + ....||+|
T Consensus 106 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~ 185 (412)
T 1w5s_A 106 LIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLV 185 (412)
T ss_dssp HHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEE
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEE
Confidence 45666766432 23455666677777652 689999999998742 233222222111 2 34558888
Q ss_pred eCChHHHhhc--------C-CCceEEcCCCCHHHHHHHHHHHh---CCCCCcchhhHHHHHHHHHhC------CCchhHH
Q 042822 66 TRGRDLLSRM--------G-SEADVRMDILNEEEAWRLFEVKL---GNDGLIRRMKSTATQIVKQCG------GLPIALE 127 (775)
Q Consensus 66 TR~~~v~~~~--------~-~~~~~~l~~L~~~~~~~Lf~~~a---~~~~~~~~~~~~~~~i~~~c~------glPLai~ 127 (775)
||...+...+ . ....+++++++.++++++|..++ +.... --.+....|++.|+ |.|..+.
T Consensus 186 ~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~G~p~~~~ 263 (412)
T 1w5s_A 186 ASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTV--WEPRHLELISDVYGEDKGGDGSARRAI 263 (412)
T ss_dssp EEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTS--CCHHHHHHHHHHHCGGGTSCCCHHHHH
T ss_pred eccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCC--CChHHHHHHHHHHHHhccCCCcHHHHH
Confidence 8765533111 1 12239999999999999998765 22211 11356788999999 9997655
Q ss_pred HHHHHH---h---cC--CcHHHHHHHHHHhcCCCcCcchhhhhhHHHHHHhhHhccCchhHHHHHHhcCCCC--C--CCC
Q 042822 128 PIAKAL---R---NK--TESECWKNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMP--K--SFF 195 (775)
Q Consensus 128 ~~g~~L---~---~~--~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cf~~~~~fp--~--~~~ 195 (775)
.+.... + .. -+.+.+..+...... ...+.-.+..||++ .+.++..++.+. . ...
T Consensus 264 ~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-------------~~~~~~~l~~l~~~-~~~~l~aia~l~~~~~~~~~ 329 (412)
T 1w5s_A 264 VALKMACEMAEAMGRDSLSEDLVRKAVSENEA-------------ASIQTHELEALSIH-ELIILRLIAEATLGGMEWIN 329 (412)
T ss_dssp HHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-------------------CCSSSSSCHH-HHHHHHHHHHHHHTTCSSBC
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-------------cchHHHHHHcCCHH-HHHHHHHHHHHHhcCCCCcc
Confidence 544321 1 11 112223333322110 12344567789887 488877777543 1 222
Q ss_pred hhhHHHHHhhc--cccccccHHHHHHHHHHHHHHHHHccceecc
Q 042822 196 ASDLFKYCIGL--GIFRGINMEDARNTLYTLVHELKDSCLLLEG 237 (775)
Q Consensus 196 ~~~li~~w~a~--g~i~~~~~~~~~~~~~~~~~~L~~~sl~~~~ 237 (775)
..++...+... ........ ....+..++++|.+.+++...
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 330 AGLLRQRYEDASLTMYNVKPR--GYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp HHHHHHHHHHHHHHHSCCCCC--CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHhCCCEEee
Confidence 33444333211 11111100 122344568899999999653
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.79 E-value=0.0028 Score=67.20 Aligned_cols=295 Identities=10% Similarity=0.105 Sum_probs=142.6
Q ss_pred CccEEEcccCCCCCccccChhhhhCCCcccEEEecCCC---CCCCC-cccccccCccEEEcCCCCCCC--ccccccCCcc
Q 042822 304 QLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQ---LFSLP-SSIDLLLNLRTLCLDHGTLGD--ITIIGELKNL 377 (775)
Q Consensus 304 ~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~---~~~lp-~~i~~l~~L~~L~L~~~~l~~--p~~i~~l~~L 377 (775)
.|+++.+..+ .. .+....|.+|.+|+.+.+..+. ++.+. ..|..+.+|+.+.+..+ ++. ...+..+.+|
T Consensus 65 ~L~sI~iP~s-vt---~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L 139 (394)
T 4gt6_A 65 VLTSVQIPDT-VT---EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEEL 139 (394)
T ss_dssp CCCEEEECTT-CC---EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTC
T ss_pred cCEEEEECCC-ee---EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccc
Confidence 4777777543 22 4566667778888888776653 33332 33555666665555432 222 2345566677
Q ss_pred cEEEecCCCCcccch-hhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccceecccCCcccccccccccc
Q 042822 378 EILSLIGSDIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEWKVEDEGSSSKRSKASLDEL 456 (775)
Q Consensus 378 ~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l 456 (775)
+.+.+..+ +..++. .+..+.+|+.+.+.. .+..+...++.. .+|+.+.+...-.. .....+
T Consensus 140 ~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~~-~~l~~i~ip~~~~~--------------i~~~af 201 (394)
T 4gt6_A 140 DTVTIPEG-VTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFTG-TALTQIHIPAKVTR--------------IGTNAF 201 (394)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTT-CCCSEEEECTTCCE--------------ECTTTT
T ss_pred ccccccce-eeeecccceecccccccccccc--eeeEeccccccc-cceeEEEECCcccc--------------cccchh
Confidence 77766532 333332 355666777776654 245555554433 45666665432211 011334
Q ss_pred CCCCCCCEEEEEeeCCCCCCCcccc-ccccceEEEecCCCCCCccccccccccccccccccccccccceEEEeccCcccc
Q 042822 457 MPLPRLTTLEIAVENDNALPEGFFV-RELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNCKTIC 535 (775)
Q Consensus 457 ~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 535 (775)
..+.++................... .......+... .....+..+.+........
T Consensus 202 ~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~ip~~v~~i~ 257 (394)
T 4gt6_A 202 SECFALSTITSDSESYPAIDNVLYEKSANGDYALIRY------------------------PSQREDPAFKIPNGVARIE 257 (394)
T ss_dssp TTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEEC------------------------CTTCCCSEEECCTTEEEEC
T ss_pred hhccccceecccccccccccceeeccccccccccccc------------------------ccccccceEEcCCcceEcc
Confidence 4455555544433322222111100 00000000000 0011122222211111111
Q ss_pred cccccccccceEEeecccCCcccccccccccccccCcEEEeecCCCccccccCCCcccCCcccccceeeccccccccccc
Q 042822 536 SRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKTIC 615 (775)
Q Consensus 536 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~ 615 (775)
...+..+.+|+.+.+.+.. ..+... ...++++|+.+.+. ..++.+.+. ....+.+|+.+.|.+ +++.+.
T Consensus 258 ~~aF~~c~~L~~i~lp~~~--~~I~~~-aF~~c~~L~~i~l~--~~i~~I~~~----aF~~c~~L~~i~lp~--~v~~I~ 326 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSV--VSIGTG-AFMNCPALQDIEFS--SRITELPES----VFAGCISLKSIDIPE--GITQIL 326 (394)
T ss_dssp TTTTTTCSSCCEEECCTTC--CEECTT-TTTTCTTCCEEECC--TTCCEECTT----TTTTCTTCCEEECCT--TCCEEC
T ss_pred cceeeecccccEEeccccc--ceecCc-ccccccccccccCC--CcccccCce----eecCCCCcCEEEeCC--cccEeh
Confidence 2223356667777664332 222211 22346777777774 234444211 223456777777753 455553
Q ss_pred ccccCcccccCCCeEEeccCCCCCccccchhhcCCCCccEEEEecc
Q 042822 616 VDRLSTESFAELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKC 661 (775)
Q Consensus 616 ~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C 661 (775)
. ..+..+.+|+++.|-. +++.+.. ..+.++++|+.+.+.+.
T Consensus 327 ~--~aF~~C~~L~~i~ip~--sv~~I~~-~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 327 D--DAFAGCEQLERIAIPS--SVTKIPE-SAFSNCTALNNIEYSGS 367 (394)
T ss_dssp T--TTTTTCTTCCEEEECT--TCCBCCG-GGGTTCTTCCEEEESSC
T ss_pred H--hHhhCCCCCCEEEECc--ccCEEhH-hHhhCCCCCCEEEECCc
Confidence 2 2344677888888853 4666654 35678888888888653
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.65 E-value=0.0021 Score=68.14 Aligned_cols=294 Identities=13% Similarity=0.128 Sum_probs=163.5
Q ss_pred eeEEEEEcCCCCCCCCCC--CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCC-cccccccCccEEE
Q 042822 283 CYAISWIDSSGGELPEGL--ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLP-SSIDLLLNLRTLC 359 (775)
Q Consensus 283 ~~~l~l~~~~~~~lp~~~--~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~ 359 (775)
++.+.+- ..+..+.... +|++|+.+.+..+....-..+....|..+..|+.+.+..+ ++.++ ..+..+.+|+.+.
T Consensus 66 L~sI~iP-~svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIP-DTVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEEC-TTCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEEC-CCeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 5666663 3455555433 8999999999876432222677778899999998877654 44443 4567889999999
Q ss_pred cCCCCCCC--ccccccCCcccEEEecCCCCcccchhhhccCCCCEecccCCccccccchHHhhccccccEEEcCCCcccc
Q 042822 360 LDHGTLGD--ITIIGELKNLEILSLIGSDIVEFPEELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMSNCFVEW 437 (775)
Q Consensus 360 L~~~~l~~--p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~ 437 (775)
+.... .. ...+..+.+|+.+.+..+ ++.+....-...+|+.+.+... +..+...++..+.+|............
T Consensus 144 lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~--~~~i~~~af~~c~~l~~~~~~~~~~~~ 219 (394)
T 4gt6_A 144 IPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAK--VTRIGTNAFSECFALSTITSDSESYPA 219 (394)
T ss_dssp CCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTT--CCEECTTTTTTCTTCCEEEECCSSSCB
T ss_pred cccee-eeecccceecccccccccccce-eeEeccccccccceeEEEECCc--ccccccchhhhccccceeccccccccc
Confidence 97543 33 345778899999998754 5555554334467888888753 455666667888888887654432210
Q ss_pred eecccCCccc--cccccccccCCCCCCCEEEEEeeCCCCCCCccccccccceEEEecCCCCCCccccccccccccccccc
Q 042822 438 KVEDEGSSSK--RSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFL 515 (775)
Q Consensus 438 ~~~~~~~~~~--~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~~~~~~~~~~~~ 515 (775)
... ..... ..............+..+. +|.. ++. .+ ...
T Consensus 220 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--------ip~~-----v~~----i~--------------------~~a 260 (394)
T 4gt6_A 220 IDN--VLYEKSANGDYALIRYPSQREDPAFK--------IPNG-----VAR----IE--------------------THA 260 (394)
T ss_dssp SSS--CEEEECTTSCEEEEECCTTCCCSEEE--------CCTT-----EEE----EC--------------------TTT
T ss_pred ccc--eeecccccccccccccccccccceEE--------cCCc-----ceE----cc--------------------cce
Confidence 000 00000 0000000000011111111 1110 000 00 011
Q ss_pred cccccccceEEEeccCcccccccccccccceEEeecccCCcccccccccccccccCcEEEeecCCCccccccCCCcccCC
Q 042822 516 ILDHQSLRMLKLKLNCKTICSRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCD 595 (775)
Q Consensus 516 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 595 (775)
+.++.+|+.+.+..............+++|+.+.+.. .++.++.. ...++.+|+.+.|.. +++.|.+. ...
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~-aF~~c~~L~~i~lp~--~v~~I~~~----aF~ 331 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS--RITELPES-VFAGCISLKSIDIPE--GITQILDD----AFA 331 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTT-TTTTCTTCCEEECCT--TCCEECTT----TTT
T ss_pred eeecccccEEecccccceecCcccccccccccccCCC--cccccCce-eecCCCCcCEEEeCC--cccEehHh----Hhh
Confidence 2236677777665433322233344678888888853 33444332 245578888888864 35554211 234
Q ss_pred cccccceeecccccccccccccccCcccccCCCeEEecc
Q 042822 596 AFPLLELLSLQNLINLKTICVDRLSTESFAELRTMKVEN 634 (775)
Q Consensus 596 ~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 634 (775)
.+.+|+.+.|-. +++.+.. ..+..+++|+.+++.+
T Consensus 332 ~C~~L~~i~ip~--sv~~I~~--~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 332 GCEQLERIAIPS--SVTKIPE--SAFSNCTALNNIEYSG 366 (394)
T ss_dssp TCTTCCEEEECT--TCCBCCG--GGGTTCTTCCEEEESS
T ss_pred CCCCCCEEEECc--ccCEEhH--hHhhCCCCCCEEEECC
Confidence 467788888753 4566632 2345678888888876
No 165
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.59 E-value=9.6e-05 Score=72.87 Aligned_cols=79 Identities=27% Similarity=0.332 Sum_probs=55.7
Q ss_pred ccccCccEEEcCCCCCCCc----cccccCCcccEEEecCCCCcccchhhhccC--CCCEecccCCccccccc------hH
Q 042822 350 DLLLNLRTLCLDHGTLGDI----TIIGELKNLEILSLIGSDIVEFPEELGKLT--KLRLLDLTNCFHLKVIA------AN 417 (775)
Q Consensus 350 ~~l~~L~~L~L~~~~l~~p----~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~--~L~~L~l~~~~~l~~~p------~~ 417 (775)
.++++|++|+|++|.+... ..++.+++|++|+|++|.++.+ ..+..+. +|++|++++|...+.+| ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 4577888888888888763 3345788888888888888766 3355555 88888888876544444 22
Q ss_pred HhhccccccEEE
Q 042822 418 LIASFTRLEELY 429 (775)
Q Consensus 418 ~l~~L~~L~~L~ 429 (775)
++..+++|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 467778888776
No 166
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.08 E-value=0.0011 Score=64.91 Aligned_cols=103 Identities=13% Similarity=0.138 Sum_probs=71.4
Q ss_pred CCcEEEEEEcCCCc--hhhhhccccCCCCCCCcEEEEEeCChHHH-hh-cCCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTE--LHLKDVGIPFGDEHKGCKVLLTTRGRDLL-SR-MGSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~~v~-~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
+++.+||+||++.. +.++.+...+.....+.++|+||+..... .. ......+++++++.++..+++...+......
T Consensus 125 ~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~ 204 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 204 (250)
T ss_dssp SSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC
T ss_pred CCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC
Confidence 46899999999764 44565555554445678899998765321 11 2234689999999999999999887321111
Q ss_pred chhhHHHHHHHHHhCCCchhHHHHHHHH
Q 042822 106 RRMKSTATQIVKQCGGLPIALEPIAKAL 133 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glPLai~~~g~~L 133 (775)
- -.+..+.|++.|+|.|..+..+...+
T Consensus 205 ~-~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 205 H-EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp B-CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 13557889999999999988766544
No 167
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.78 E-value=0.053 Score=56.95 Aligned_cols=196 Identities=12% Similarity=0.062 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEEcCCCchh--hhhc-cccCCCCCCCcEEEEEeCChHH--------HhhcCCCceEEcC
Q 042822 16 EHARASMLYAQLKKSRKILVILDNVWTELH--LKDV-GIPFGDEHKGCKVLLTTRGRDL--------LSRMGSEADVRMD 84 (775)
Q Consensus 16 ~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~--~~~l-~~~~~~~~~gs~iivTTR~~~v--------~~~~~~~~~~~l~ 84 (775)
..+....+.+.+. .++.+|||||++.... +... ...+.....+.+||+||+.... ...++ ..+.++
T Consensus 119 ~~~~~~~l~~~l~-~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~~l~~~l~sr~~--~~i~l~ 195 (384)
T 2qby_B 119 LGEYIDKIKNGTR-NIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDYMEPRVLSSLG--PSVIFK 195 (384)
T ss_dssp THHHHHHHHHHHS-SSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTTTSCHHHHHTCC--CEEEEC
T ss_pred HHHHHHHHHHHhc-cCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHhhhCHHHHhcCC--CeEEEC
Confidence 3556677777776 4555999999987532 1222 1122211167889999987532 12222 389999
Q ss_pred CCCHHHHHHHHHHHhC---C-CCCcchhhHHHHHHHHHhC---CCch-hHHHHHHHH--h---cCCcHHHHHHHHHHhcC
Q 042822 85 ILNEEEAWRLFEVKLG---N-DGLIRRMKSTATQIVKQCG---GLPI-ALEPIAKAL--R---NKTESECWKNALHELRM 151 (775)
Q Consensus 85 ~L~~~~~~~Lf~~~a~---~-~~~~~~~~~~~~~i~~~c~---glPL-ai~~~g~~L--~---~~~~~~~w~~~l~~l~~ 151 (775)
+++.++..+++..++. . .... .+..+.+++.++ |.|. |+..+-.+. + ..-+.+.+..++....
T Consensus 196 ~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~- 271 (384)
T 2qby_B 196 PYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYE- 271 (384)
T ss_dssp CCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh-
Confidence 9999999999999862 1 2222 345677788887 8877 444333322 2 1223344555555421
Q ss_pred CCcCcchhhhhhHHHHHHhhHhccCchhHHHHHHhcCCCCCCCChh-hHHHHHhhccccccccHHHHHHHHHHHHHHHHH
Q 042822 152 PTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMPKSFFAS-DLFKYCIGLGIFRGINMEDARNTLYTLVHELKD 230 (775)
Q Consensus 152 ~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cf~~~~~fp~~~~~~-~li~~w~a~g~i~~~~~~~~~~~~~~~~~~L~~ 230 (775)
...+..+++.|++++ +..+..++....+..+. .....--..| +... ....+.++++.|..
T Consensus 272 -------------~~~~~~~~~~l~~~~-~~~l~al~~~~~~~~~~~~~~~~~~~~g-~~~~----~~~~~~~~l~~L~~ 332 (384)
T 2qby_B 272 -------------QERLIEAVKALPFHY-KLALRSLIESEDVMSAHKMYTDLCNKFK-QKPL----SYRRFSDIISELDM 332 (384)
T ss_dssp -------------HHHHHHHHHSSCHHH-HHHHHHHHTCCBHHHHHHHHHHHHHHTT-CCCC----CHHHHHHHHHHHHH
T ss_pred -------------cchHHHHHHcCCHHH-HHHHHHHHHhcccChHHHHHHHHHHHcC-CCCC----CHHHHHHHHHHHHh
Confidence 124566778888763 55444454411101111 1111111112 1111 22345567889999
Q ss_pred ccceecc
Q 042822 231 SCLLLEG 237 (775)
Q Consensus 231 ~sl~~~~ 237 (775)
.+++...
T Consensus 333 ~gli~~~ 339 (384)
T 2qby_B 333 FGIVKIR 339 (384)
T ss_dssp TTSEEEE
T ss_pred CCCEEEE
Confidence 9999753
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.59 E-value=0.089 Score=55.10 Aligned_cols=80 Identities=15% Similarity=0.193 Sum_probs=39.7
Q ss_pred ccccCcEEEeecCCCccccccCCCcccCCcccccceeecccccccccccccccCcccccCCCeEEeccCCCCCccccchh
Q 042822 567 GFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKTICVDRLSTESFAELRTMKVENCDELSNIFVLST 646 (775)
Q Consensus 567 ~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~ 646 (775)
++..|+.+.+... ++.+.. .....+.+|+.+.+.. +++.+.. .....+++|+.+.+.+ ..++.++. ..
T Consensus 238 ~~~~L~~i~lp~~--v~~I~~----~aF~~~~~l~~i~l~~--~i~~i~~--~aF~~c~~L~~i~l~~-~~i~~I~~-~a 305 (379)
T 4h09_A 238 GMKALDEIAIPKN--VTSIGS----FLLQNCTALKTLNFYA--KVKTVPY--LLCSGCSNLTKVVMDN-SAIETLEP-RV 305 (379)
T ss_dssp TCSSCCEEEECTT--CCEECT----TTTTTCTTCCEEEECC--CCSEECT--TTTTTCTTCCEEEECC-TTCCEECT-TT
T ss_pred CCccceEEEcCCC--ccEeCc----cccceeehhccccccc--cceeccc--cccccccccccccccc-cccceehh-hh
Confidence 3556666665432 333311 0122344566655542 3444421 2234566777777754 24555544 24
Q ss_pred hcCCCCccEEEE
Q 042822 647 TKCLPSLQRIAV 658 (775)
Q Consensus 647 ~~~l~~L~~L~l 658 (775)
+.++++|+.+.+
T Consensus 306 F~~c~~L~~i~l 317 (379)
T 4h09_A 306 FMDCVKLSSVTL 317 (379)
T ss_dssp TTTCTTCCEEEC
T ss_pred hcCCCCCCEEEc
Confidence 566677777766
No 169
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.36 E-value=0.038 Score=58.07 Aligned_cols=210 Identities=14% Similarity=0.099 Sum_probs=111.5
Q ss_pred HHHHhCCCCc--cccHHHHHHHHHHHHhc-CCcEEEEEEcCCCchhh----hhc---cccCCCC--CCCcEEEEEeCChH
Q 042822 3 IAEQIGLTLD--KETEHARASMLYAQLKK-SRKILVILDNVWTELHL----KDV---GIPFGDE--HKGCKVLLTTRGRD 70 (775)
Q Consensus 3 i~~~l~~~~~--~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~~~----~~l---~~~~~~~--~~gs~iivTTR~~~ 70 (775)
|++++|.... ..+..+....+.+.+.. +++.+|||||++..... +.+ ....... ..+..+|+||+...
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 5566665332 33455667777777753 46899999999875321 212 1111111 34567888887652
Q ss_pred H--------HhhcCCCceEEcCCCCHHHHHHHHHHHhC---C-CCCcchhhHHHHHHHHHhC---CCch-hHHHHHHHH-
Q 042822 71 L--------LSRMGSEADVRMDILNEEEAWRLFEVKLG---N-DGLIRRMKSTATQIVKQCG---GLPI-ALEPIAKAL- 133 (775)
Q Consensus 71 v--------~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~---~-~~~~~~~~~~~~~i~~~c~---glPL-ai~~~g~~L- 133 (775)
. ...++ ...+.+++++.++..+++...+. . .... .+..+.++++++ |.|- |+.++..+.
T Consensus 179 ~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~ 254 (387)
T 2v1u_A 179 FVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLRVAGE 254 (387)
T ss_dssp TSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred hHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 2 22222 14789999999999999998862 1 2222 245677888887 9994 333332222
Q ss_pred -h---c--CCcHHHHHHHHHHhcCCCcCcchhhhhhHHHHHHhhHhccCchhHHHHHHhcC-CCCC-C-CChhhHHHHHh
Q 042822 134 -R---N--KTESECWKNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCS-LMPK-S-FFASDLFKYCI 204 (775)
Q Consensus 134 -~---~--~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cf~~~~-~fp~-~-~~~~~li~~w~ 204 (775)
. + .-+.+.++.++... ....+.-++..++++. +..+...+ ++.. + ....++.+...
T Consensus 255 ~a~~~~~~~i~~~~v~~a~~~~--------------~~~~~~~~~~~l~~~~-~~~l~a~~~~~~~~~~~~~~~~~~~~~ 319 (387)
T 2v1u_A 255 IAERRREERVRREHVYSARAEI--------------ERDRVSEVVRTLPLHA-KLVLLSIMMLEDGGRPASTGEIYERYK 319 (387)
T ss_dssp HHHHTTCSCBCHHHHHHHHHHH--------------HHHHHHHHHHSSCHHH-HHHHHHHHHHSSSSCCEEHHHHHHHHH
T ss_pred HHHHcCCCCcCHHHHHHHHHHH--------------hhchHHHHHHcCCHHH-HHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 1 1 11233355544432 1123555678888873 44443333 2321 1 12223333221
Q ss_pred h----ccccccccHHHHHHHHHHHHHHHHHccceec
Q 042822 205 G----LGIFRGINMEDARNTLYTLVHELKDSCLLLE 236 (775)
Q Consensus 205 a----~g~i~~~~~~~~~~~~~~~~~~L~~~sl~~~ 236 (775)
. .| +... +...+..+++.|...+++..
T Consensus 320 ~~~~~~~-~~~~----~~~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 320 ELTSTLG-LEHV----TLRRVSGIISELDMLGIVKS 350 (387)
T ss_dssp HHHHHTT-CCCC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHhcC-CCCC----CHHHHHHHHHHHHhCCCeEE
Confidence 1 11 1111 23445567888999999875
No 170
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.94 E-value=0.022 Score=54.36 Aligned_cols=99 Identities=10% Similarity=0.015 Sum_probs=66.7
Q ss_pred CCcEEEEEEcCCCch--hhhhccccCCCCCCCcEEEEEeCChHHH-h-hcCCCceEEcCCCCHHHHHHHHHHHhC--CCC
Q 042822 30 SRKILVILDNVWTEL--HLKDVGIPFGDEHKGCKVLLTTRGRDLL-S-RMGSEADVRMDILNEEEAWRLFEVKLG--NDG 103 (775)
Q Consensus 30 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~~v~-~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~--~~~ 103 (775)
+++.+||+||++... .++.+...+.....+.++|+||+..... . .......+.+++++.++..+++...+. ...
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 180 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK 180 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 578999999998763 3444444443445677899998865321 1 112234899999999999999998872 212
Q ss_pred CcchhhHHHHHHHHHhCCCchhHHHHHH
Q 042822 104 LIRRMKSTATQIVKQCGGLPIALEPIAK 131 (775)
Q Consensus 104 ~~~~~~~~~~~i~~~c~glPLai~~~g~ 131 (775)
.. .+..+.+++.++|.|..+..+..
T Consensus 181 ~~---~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 181 IT---EDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp BC---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 22 34577888999999996654443
No 171
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.86 E-value=0.058 Score=56.59 Aligned_cols=110 Identities=11% Similarity=0.085 Sum_probs=67.4
Q ss_pred cHHHHHHHHHHHHhc-CCcEEEEEEcCCCch------hhhhccccCCC-CCCCcEEEEEeCChHHHhhcC-------CCc
Q 042822 15 TEHARASMLYAQLKK-SRKILVILDNVWTEL------HLKDVGIPFGD-EHKGCKVLLTTRGRDLLSRMG-------SEA 79 (775)
Q Consensus 15 ~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~------~~~~l~~~~~~-~~~gs~iivTTR~~~v~~~~~-------~~~ 79 (775)
+..+....+.+.+.. +++.+||+|+++... .+..+...+.. ...+..+|+||+.......+. ...
T Consensus 111 ~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~ 190 (386)
T 2qby_A 111 SIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEE 190 (386)
T ss_dssp CHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTE
T ss_pred CHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCe
Confidence 355666777777764 358999999997643 22222222211 233556788888764332211 124
Q ss_pred eEEcCCCCHHHHHHHHHHHhC---C-CCCcchhhHHHHHHHHHhC---CCchhHH
Q 042822 80 DVRMDILNEEEAWRLFEVKLG---N-DGLIRRMKSTATQIVKQCG---GLPIALE 127 (775)
Q Consensus 80 ~~~l~~L~~~~~~~Lf~~~a~---~-~~~~~~~~~~~~~i~~~c~---glPLai~ 127 (775)
.+.+++++.++.++++...+. . .... .+..+.+++.++ |.|..+.
T Consensus 191 ~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~ 242 (386)
T 2qby_A 191 EIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRAL 242 (386)
T ss_dssp EEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHH
T ss_pred eEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHH
Confidence 799999999999999998762 1 2222 345666777777 9988443
No 172
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.34 E-value=0.21 Score=52.31 Aligned_cols=124 Identities=10% Similarity=0.128 Sum_probs=76.2
Q ss_pred HHHHhCCCCc--cccHHHHHHHHHHHHhc-CCcEEEEEEcCCCc--hhhhhccccCCCC-C---CCcEEEEEeCChHHHh
Q 042822 3 IAEQIGLTLD--KETEHARASMLYAQLKK-SRKILVILDNVWTE--LHLKDVGIPFGDE-H---KGCKVLLTTRGRDLLS 73 (775)
Q Consensus 3 i~~~l~~~~~--~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~--~~~~~l~~~~~~~-~---~gs~iivTTR~~~v~~ 73 (775)
+++.+|.... ..+..+....+.+.+.+ +++.+||+|+++.. +....+...+... . .+..||+||+......
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 4555655322 23455566666666653 46889999999875 2333333333221 1 4667888888765433
Q ss_pred hcC-------CCceEEcCCCCHHHHHHHHHHHhC---C-CCCcchhhHHHHHHHHHh---------CCCchhHHHH
Q 042822 74 RMG-------SEADVRMDILNEEEAWRLFEVKLG---N-DGLIRRMKSTATQIVKQC---------GGLPIALEPI 129 (775)
Q Consensus 74 ~~~-------~~~~~~l~~L~~~~~~~Lf~~~a~---~-~~~~~~~~~~~~~i~~~c---------~glPLai~~~ 129 (775)
.+. ....+.+++++.++..+++...+. . .... .+..+.+++.+ +|.|..+..+
T Consensus 174 ~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~ 246 (389)
T 1fnn_A 174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYS---EDILQMIADITGAQTPLDTNRGDARLAIDI 246 (389)
T ss_dssp TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSC---HHHHHHHHHHHSBSSTTCTTSCCHHHHHHH
T ss_pred HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHhhcccCCCCCCcHHHHHHH
Confidence 321 123699999999999999998862 1 1222 35677888999 7887544433
No 173
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.16 E-value=0.048 Score=57.18 Aligned_cols=123 Identities=17% Similarity=0.175 Sum_probs=69.4
Q ss_pred CCCCccEEEcccCCCCCccccChhhhhCCCcccEEEecCCCCCCCC-cccccccCccEEEcCCCCCCC--ccccccCCcc
Q 042822 301 ECPQLELLLLSSKHSSVDVNIPRSFFTGMRELKVVDLTNMQLFSLP-SSIDLLLNLRTLCLDHGTLGD--ITIIGELKNL 377 (775)
Q Consensus 301 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~l~~--p~~i~~l~~L 377 (775)
.+.+|+.+.+..+-. .+....|.++..|+.+.+..+ ++.+. ..+.++.+|+.+.+..+ +.. ...+..+.+|
T Consensus 215 ~~~~l~~i~~~~~~~----~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 215 YGKNLKKITITSGVT----TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TCSSCSEEECCTTCC----EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred cccccceeeecccee----EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 455566666544321 344445566667777666544 33332 33455666666666432 333 2345566667
Q ss_pred cEEEecCCCCcccch-hhhccCCCCEecccCCccccccchHHhhccccccEEEcC
Q 042822 378 EILSLIGSDIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAANLIASFTRLEELYMS 431 (775)
Q Consensus 378 ~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~ 431 (775)
+.+.+.++.++.++. .+.++.+|+.+.+.. .++.+...+|.++++|+.+.+.
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence 777666666665543 356666677666654 2556666556666666666553
No 174
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.88 E-value=0.027 Score=52.18 Aligned_cols=107 Identities=16% Similarity=0.117 Sum_probs=55.4
Q ss_pred hCCCcccEEEecCC-CCC-----CCCcccccccCccEEEcCCCCCCC--c----cccccCCcccEEEecCCCCc-----c
Q 042822 327 TGMRELKVVDLTNM-QLF-----SLPSSIDLLLNLRTLCLDHGTLGD--I----TIIGELKNLEILSLIGSDIV-----E 389 (775)
Q Consensus 327 ~~l~~L~~L~l~~~-~~~-----~lp~~i~~l~~L~~L~L~~~~l~~--p----~~i~~l~~L~~L~l~~~~l~-----~ 389 (775)
.+-+.|+.|+|+++ .+. .+-..+..-+.|+.|+|++|.+.+ - ..+..-+.|++|+|++|.|. .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 44456666666654 444 123334444566777777766654 1 12334456777777766655 1
Q ss_pred cchhhhccCCCCEecccCCc--cccc-----cchHHhhccccccEEEcCCCc
Q 042822 390 FPEELGKLTKLRLLDLTNCF--HLKV-----IAANLIASFTRLEELYMSNCF 434 (775)
Q Consensus 390 lp~~i~~l~~L~~L~l~~~~--~l~~-----~p~~~l~~L~~L~~L~l~~~~ 434 (775)
+-+.+..-+.|++|++++|. .++. +.. ++..-+.|..|+++.+.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCC
Confidence 22233444567777776542 1221 122 24445667777766543
No 175
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.66 E-value=0.081 Score=53.92 Aligned_cols=99 Identities=10% Similarity=0.060 Sum_probs=65.9
Q ss_pred CCcEEEEEEcCCCc--hhhhhccccCCCCCCCcEEEEEeCChHH-Hhh-cCCCceEEcCCCCHHHHHHHHHHHhCC--CC
Q 042822 30 SRKILVILDNVWTE--LHLKDVGIPFGDEHKGCKVLLTTRGRDL-LSR-MGSEADVRMDILNEEEAWRLFEVKLGN--DG 103 (775)
Q Consensus 30 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~~v-~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~--~~ 103 (775)
+++.+||+||++.. +.++.+...+.....++++|+||+...- ... ......+++.+++.++..+++...+.. ..
T Consensus 106 ~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 185 (323)
T 1sxj_B 106 GKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVK 185 (323)
T ss_dssp TCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC
T ss_pred CCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCC
Confidence 46899999999874 3344444444344467788888876421 111 223358999999999999999987721 11
Q ss_pred CcchhhHHHHHHHHHhCCCchh-HHHHHH
Q 042822 104 LIRRMKSTATQIVKQCGGLPIA-LEPIAK 131 (775)
Q Consensus 104 ~~~~~~~~~~~i~~~c~glPLa-i~~~g~ 131 (775)
.. .+....+++.|+|.|.. +..+..
T Consensus 186 ~~---~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 186 YT---NDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp BC---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 11 34578899999999954 444443
No 176
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.07 E-value=0.088 Score=45.35 Aligned_cols=50 Identities=24% Similarity=0.297 Sum_probs=20.9
Q ss_pred EEEecCCCCC--CCCcccccccCccEEEcCCCCCCC-c-cccccCCcccEEEecCC
Q 042822 334 VVDLTNMQLF--SLPSSIDLLLNLRTLCLDHGTLGD-I-TIIGELKNLEILSLIGS 385 (775)
Q Consensus 334 ~L~l~~~~~~--~lp~~i~~l~~L~~L~L~~~~l~~-p-~~i~~l~~L~~L~l~~~ 385 (775)
+++.+++.++ .+|..+. .+|++|+|++|.|+. + ..+..+.+|++|+|++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 4444555444 4443321 234444444444443 1 22334444444444444
No 177
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.62 E-value=0.045 Score=50.73 Aligned_cols=107 Identities=10% Similarity=0.035 Sum_probs=70.2
Q ss_pred CCCccEEEcccC-CCCCcc-ccChhhhhCCCcccEEEecCCCCC-----CCCcccccccCccEEEcCCCCCCC--c----
Q 042822 302 CPQLELLLLSSK-HSSVDV-NIPRSFFTGMRELKVVDLTNMQLF-----SLPSSIDLLLNLRTLCLDHGTLGD--I---- 368 (775)
Q Consensus 302 ~~~Lr~L~l~~~-~~~~~~-~l~~~~~~~l~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~L~~~~l~~--p---- 368 (775)
-+.|+.|+++++ .+...+ ......+..-..|+.|+|++|.+. .+...+..=+.|++|+|++|.|.. .
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 456788888765 433211 011223356678999999999887 334445556789999999999875 2
Q ss_pred cccccCCcccEEEecCCCC---c-----ccchhhhccCCCCEecccCC
Q 042822 369 TIIGELKNLEILSLIGSDI---V-----EFPEELGKLTKLRLLDLTNC 408 (775)
Q Consensus 369 ~~i~~l~~L~~L~l~~~~l---~-----~lp~~i~~l~~L~~L~l~~~ 408 (775)
..+..-+.|++|+|+++.. . .+-..+..-+.|+.|+++.+
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 3345556799999986533 3 13344556688999999765
No 178
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.37 E-value=0.12 Score=44.37 Aligned_cols=35 Identities=31% Similarity=0.370 Sum_probs=22.1
Q ss_pred cccEEEecCCCCCCCCcc-cccccCccEEEcCCCCC
Q 042822 331 ELKVVDLTNMQLFSLPSS-IDLLLNLRTLCLDHGTL 365 (775)
Q Consensus 331 ~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~L~~~~l 365 (775)
+|++|+|++|.++.+|.. +..+.+|++|+|.+|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 466666666666666543 45666677777766654
No 179
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=92.83 E-value=0.23 Score=50.54 Aligned_cols=111 Identities=12% Similarity=0.045 Sum_probs=65.4
Q ss_pred HHHHHHhc--CCcEEEEEEcCCCch--hhhhccccCCC------------------CCCCcEEEEEeCChH-HHhhc-C-
Q 042822 22 MLYAQLKK--SRKILVILDNVWTEL--HLKDVGIPFGD------------------EHKGCKVLLTTRGRD-LLSRM-G- 76 (775)
Q Consensus 22 ~l~~~l~~--~kr~LlVlDdv~~~~--~~~~l~~~~~~------------------~~~gs~iivTTR~~~-v~~~~-~- 76 (775)
.+...+.+ .+..+|++||+.... ..+.+...+.. ...+.++|.||.... +.... .
T Consensus 79 ~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R 158 (324)
T 1hqc_A 79 DLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSR 158 (324)
T ss_dssp HHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTT
T ss_pred HHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhc
Confidence 34444442 467799999998753 22222111100 012356777776432 11111 1
Q ss_pred CCceEEcCCCCHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHhCCCchhHHHHHHHH
Q 042822 77 SEADVRMDILNEEEAWRLFEVKLGNDGLIRRMKSTATQIVKQCGGLPIALEPIAKAL 133 (775)
Q Consensus 77 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L 133 (775)
....+.+.+++.+|..+++...+...... --.+....+++.++|.|-.+..+...+
T Consensus 159 ~~~~i~l~~~~~~e~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 159 FGIVEHLEYYTPEELAQGVMRDARLLGVR-ITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp CSCEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred ccEEEecCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 12579999999999999998887322111 113567889999999998877665554
No 180
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=91.48 E-value=0.42 Score=48.51 Aligned_cols=104 Identities=13% Similarity=0.046 Sum_probs=67.9
Q ss_pred CCcEEEEEEcCCCc--hhhhhccccCCCCCCCcEEEEEeCChHH-Hhh-cCCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTE--LHLKDVGIPFGDEHKGCKVLLTTRGRDL-LSR-MGSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~~v-~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
+++.+||+||++.. +.++.+...+.....+.++|+||....- ... ......+.+.+++.++..+++...+......
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 188 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE 188 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCE
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence 56889999999875 3345454444344567889988876431 111 1112378999999999999999887322211
Q ss_pred chhhHHHHHHHHHhCCCchhHHHHHHHHh
Q 042822 106 RRMKSTATQIVKQCGGLPIALEPIAKALR 134 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glPLai~~~g~~L~ 134 (775)
- -.+....|++.++|.|..+..+.....
T Consensus 189 ~-~~~~~~~l~~~~~g~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 189 L-TEEGLQAILYIAEGDMRRAINILQAAA 216 (327)
T ss_dssp E-CHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 1 135577889999999987665544443
No 181
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=89.64 E-value=1.8 Score=43.57 Aligned_cols=101 Identities=11% Similarity=0.056 Sum_probs=66.8
Q ss_pred CCcEEEEEEcCCCc--hhhhhccccCCCCCCCcEEEEEeCChH-HHhh-cCCCceEEcCCCCHHHHHHHHHHHhCCCCCc
Q 042822 30 SRKILVILDNVWTE--LHLKDVGIPFGDEHKGCKVLLTTRGRD-LLSR-MGSEADVRMDILNEEEAWRLFEVKLGNDGLI 105 (775)
Q Consensus 30 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 105 (775)
+++-+||+|+++.. +..+.+...+.....+.++|+||.... +... ......+++.+++.++..+.+...+......
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 180 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK 180 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCC
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 56889999999765 334555555555556778888886643 1111 1223589999999999999998887322111
Q ss_pred chhhHHHHHHHHHhCCCchhHHHHHH
Q 042822 106 RRMKSTATQIVKQCGGLPIALEPIAK 131 (775)
Q Consensus 106 ~~~~~~~~~i~~~c~glPLai~~~g~ 131 (775)
-+ .+....+++.++|.+..+..+..
T Consensus 181 i~-~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 181 IT-EDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp BC-HHHHHHHHHTTTTCHHHHHHHHH
T ss_pred CC-HHHHHHHHHHcCCCHHHHHHHHH
Confidence 11 34567888999999886654433
No 182
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=88.73 E-value=0.77 Score=47.60 Aligned_cols=98 Identities=13% Similarity=0.115 Sum_probs=64.8
Q ss_pred CCcEEEEEEcCCCc--hhhhhccccCCCCCCCcEEEEEeCChH-HHhh-cCCCceEEcCCCCHHHHHHHHHHHhC--CCC
Q 042822 30 SRKILVILDNVWTE--LHLKDVGIPFGDEHKGCKVLLTTRGRD-LLSR-MGSEADVRMDILNEEEAWRLFEVKLG--NDG 103 (775)
Q Consensus 30 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~--~~~ 103 (775)
+++.+||+||++.. +.++.+...+.....+..+|+||.... +... ......+++.+++.++..+++...+. +..
T Consensus 118 ~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~ 197 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 (373)
T ss_dssp SSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC
T ss_pred CCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 46789999999764 334444444433445677777776442 1111 22346899999999999999988762 111
Q ss_pred CcchhhHHHHHHHHHhCCCchhHHHHH
Q 042822 104 LIRRMKSTATQIVKQCGGLPIALEPIA 130 (775)
Q Consensus 104 ~~~~~~~~~~~i~~~c~glPLai~~~g 130 (775)
.. .+....|++.++|.|..+..+.
T Consensus 198 ~~---~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 198 HE---PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp BC---HHHHHHHHHHSSSCHHHHHHHH
T ss_pred CC---HHHHHHHHHHCCCCHHHHHHHH
Confidence 11 3457789999999999876554
No 183
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=84.33 E-value=5.8 Score=38.75 Aligned_cols=123 Identities=18% Similarity=0.199 Sum_probs=65.4
Q ss_pred HHHHHHHhcCCcEEEEEEcCCCc-----------hh-hhhccccC---CCCCCCcEEEEEeCChHHHhh---cCC-CceE
Q 042822 21 SMLYAQLKKSRKILVILDNVWTE-----------LH-LKDVGIPF---GDEHKGCKVLLTTRGRDLLSR---MGS-EADV 81 (775)
Q Consensus 21 ~~l~~~l~~~kr~LlVlDdv~~~-----------~~-~~~l~~~~---~~~~~gs~iivTTR~~~v~~~---~~~-~~~~ 81 (775)
..+.+.....+..+|++||+... .. .+.+...+ ...+....||.||........ .+. ...+
T Consensus 114 ~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i 193 (272)
T 1d2n_A 114 KKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTI 193 (272)
T ss_dssp HHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEE
T ss_pred HHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEE
Confidence 33444443357889999998653 11 12222222 123344567888887755432 121 3578
Q ss_pred EcCCCCH-HHHHHHHHHHhCCCCCcchhhHHHHHHHHHhCCC------chhHHHHHHHHhcCCcHHHHHHHHHHhc
Q 042822 82 RMDILNE-EEAWRLFEVKLGNDGLIRRMKSTATQIVKQCGGL------PIALEPIAKALRNKTESECWKNALHELR 150 (775)
Q Consensus 82 ~l~~L~~-~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~gl------PLai~~~g~~L~~~~~~~~w~~~l~~l~ 150 (775)
++++++. ++-.+++... .. .. .+....|++.+.|. +-++.++-.+ ........|++++..+.
T Consensus 194 ~~p~l~~r~~i~~i~~~~-~~--~~---~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a-~~~~~~~~~~~~~~~l~ 262 (272)
T 1d2n_A 194 HVPNIATGEQLLEALELL-GN--FK---DKERTTIAQQVKGKKVWIGIKKLLMLIEMS-LQMDPEYRVRKFLALLR 262 (272)
T ss_dssp ECCCEEEHHHHHHHHHHH-TC--SC---HHHHHHHHHHHTTSEEEECHHHHHHHHHHH-TTSCGGGHHHHHHHHHH
T ss_pred cCCCccHHHHHHHHHHhc-CC--CC---HHHHHHHHHHhcCCCccccHHHHHHHHHHH-hhhchHHHHHHHHHHHH
Confidence 9999987 6655555443 21 11 34467788888873 3333333322 22333344677666553
No 184
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=78.84 E-value=5 Score=42.51 Aligned_cols=94 Identities=13% Similarity=0.187 Sum_probs=59.8
Q ss_pred CcEEEEEEcCCCch---hh-hhccccCCC-CCCCcEEEEEeCCh---------HHHhhcCCCceEEcCCCCHHHHHHHHH
Q 042822 31 RKILVILDNVWTEL---HL-KDVGIPFGD-EHKGCKVLLTTRGR---------DLLSRMGSEADVRMDILNEEEAWRLFE 96 (775)
Q Consensus 31 kr~LlVlDdv~~~~---~~-~~l~~~~~~-~~~gs~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~ 96 (775)
+.-+||+||++... .+ +.+...+.. ...|..||+||... .+...+.....+.+++++.++-.+++.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~ 273 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIAR 273 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHH
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHH
Confidence 56789999997543 12 222222211 13467788888762 333334444678999999999999999
Q ss_pred HHhC--CCCCcchhhHHHHHHHHHhCCCchhHH
Q 042822 97 VKLG--NDGLIRRMKSTATQIVKQCGGLPIALE 127 (775)
Q Consensus 97 ~~a~--~~~~~~~~~~~~~~i~~~c~glPLai~ 127 (775)
+.+. +...+ .+....|++.++|.+-.+.
T Consensus 274 ~~~~~~~~~i~---~e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 274 KMLEIEHGELP---EEVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHHHTCCCC---TTHHHHHHHHCCSCHHHHH
T ss_pred HHHHHcCCCCC---HHHHHHHHHhcCCCHHHHH
Confidence 8872 22222 2446778889999886554
No 185
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=78.75 E-value=0.9 Score=43.51 Aligned_cols=96 Identities=14% Similarity=0.128 Sum_probs=57.2
Q ss_pred CcEEEEEEcCCCchh----hhhccccCCC--CCCCcEEEEEeCCh---------HHHhhcCCCceEEcCCCCHHHHHHHH
Q 042822 31 RKILVILDNVWTELH----LKDVGIPFGD--EHKGCKVLLTTRGR---------DLLSRMGSEADVRMDILNEEEAWRLF 95 (775)
Q Consensus 31 kr~LlVlDdv~~~~~----~~~l~~~~~~--~~~gs~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf 95 (775)
++-+||+||++.... .+.+...+.. .....+||+||+.. .+...+.....+++++++.++..+++
T Consensus 104 ~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l 183 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAAL 183 (242)
T ss_dssp GSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHH
T ss_pred CCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHH
Confidence 456889999976521 1222221110 11122578877643 22222222368999999999999999
Q ss_pred HHHhC--CCCCcchhhHHHHHHHHHhCCCchhHHHH
Q 042822 96 EVKLG--NDGLIRRMKSTATQIVKQCGGLPIALEPI 129 (775)
Q Consensus 96 ~~~a~--~~~~~~~~~~~~~~i~~~c~glPLai~~~ 129 (775)
...+. ..... .+....+++.++|.+-.+..+
T Consensus 184 ~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 184 QRRAAMRGLQLP---EDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHHHHHTTCCCC---HHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHcCCCCC---HHHHHHHHHHccCCHHHHHHH
Confidence 98872 21222 355778889999988766544
No 186
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=75.16 E-value=5.9 Score=40.17 Aligned_cols=103 Identities=12% Similarity=0.033 Sum_probs=66.1
Q ss_pred HHHHHHHHh----cCCcEEEEEEcCCCch--hhhhccccCCCCCCCcEEEEEeCChH-HHhh-cCCCceEEcCCCCHHHH
Q 042822 20 ASMLYAQLK----KSRKILVILDNVWTEL--HLKDVGIPFGDEHKGCKVLLTTRGRD-LLSR-MGSEADVRMDILNEEEA 91 (775)
Q Consensus 20 ~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~~-v~~~-~~~~~~~~l~~L~~~~~ 91 (775)
+..+.+.+. .+++-++|+|+++... ..+.+...+.....+..+|++|...+ +... ..-...+.+.+++.++.
T Consensus 93 ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~ 172 (334)
T 1a5t_A 93 VREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYA 172 (334)
T ss_dssp HHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHH
T ss_pred HHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHH
Confidence 344555543 2467889999998753 33444444444445677777776642 3222 22345899999999999
Q ss_pred HHHHHHHhCCCCCcchhhHHHHHHHHHhCCCchhHHH
Q 042822 92 WRLFEVKLGNDGLIRRMKSTATQIVKQCGGLPIALEP 128 (775)
Q Consensus 92 ~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~ 128 (775)
.+.+...+ ... .+....+++.++|.|..+..
T Consensus 173 ~~~L~~~~---~~~---~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 173 VTWLSREV---TMS---QDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp HHHHHHHC---CCC---HHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHhc---CCC---HHHHHHHHHHcCCCHHHHHH
Confidence 99888775 111 24457889999999976644
No 187
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=74.09 E-value=12 Score=36.69 Aligned_cols=109 Identities=13% Similarity=0.183 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhcCCcEEEEEEcCCCc------------hh----hhhccccCC--CCCCCcEEEEEeCChHHHhh--c-
Q 042822 17 HARASMLYAQLKKSRKILVILDNVWTE------------LH----LKDVGIPFG--DEHKGCKVLLTTRGRDLLSR--M- 75 (775)
Q Consensus 17 ~~~~~~l~~~l~~~kr~LlVlDdv~~~------------~~----~~~l~~~~~--~~~~gs~iivTTR~~~v~~~--~- 75 (775)
......+.......+..+|++||+... .. ...+...+. ....+..||.||........ .
T Consensus 96 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~ 175 (285)
T 3h4m_A 96 ASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILR 175 (285)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHS
T ss_pred HHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcC
Confidence 344555555555567789999999653 11 111111111 22346778888875432211 1
Q ss_pred --CCCceEEcCCCCHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHhCCC-chhHH
Q 042822 76 --GSEADVRMDILNEEEAWRLFEVKLGNDGLIRRMKSTATQIVKQCGGL-PIALE 127 (775)
Q Consensus 76 --~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~gl-PLai~ 127 (775)
.....+.+++.+.++..+++..++.......+ .....+++...|. |-.+.
T Consensus 176 ~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 176 PGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED--VNLEEIAKMTEGCVGAELK 228 (285)
T ss_dssp TTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHHCTTCCHHHHH
T ss_pred CCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc--CCHHHHHHHcCCCCHHHHH
Confidence 12247899999999999999988843222111 1145667777663 43433
No 188
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=72.69 E-value=5.5 Score=40.63 Aligned_cols=101 Identities=10% Similarity=0.074 Sum_probs=61.1
Q ss_pred CcEEEEEEcCCCch--hhhhccccCCCCCCCcEEEEEeCCh-HHHhh-cCCCceEEcCCCCHHHHHHHHHHHhCCCCCcc
Q 042822 31 RKILVILDNVWTEL--HLKDVGIPFGDEHKGCKVLLTTRGR-DLLSR-MGSEADVRMDILNEEEAWRLFEVKLGNDGLIR 106 (775)
Q Consensus 31 kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~ 106 (775)
++-++|+|++...+ ..+.+...+.....+.++|+||... .+... ......+++++++.++..+.+...+......-
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQL 213 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEE
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCC
Confidence 45589999998753 2233333222223456777777653 22221 12236899999999999999998872211100
Q ss_pred hhhHHHHHHHHHhCCCchhHHHHHH
Q 042822 107 RMKSTATQIVKQCGGLPIALEPIAK 131 (775)
Q Consensus 107 ~~~~~~~~i~~~c~glPLai~~~g~ 131 (775)
+-.+....|++.++|.+-.+..+..
T Consensus 214 ~~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 214 ETKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp CCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 0024577889999998876654443
No 189
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=72.18 E-value=23 Score=33.85 Aligned_cols=105 Identities=17% Similarity=0.220 Sum_probs=57.8
Q ss_pred HHHHHHHHhcCCcEEEEEEcCCCch-------------h----hhhccccCCC--CCCCcEEEEEeCChHHHh-h-c---
Q 042822 20 ASMLYAQLKKSRKILVILDNVWTEL-------------H----LKDVGIPFGD--EHKGCKVLLTTRGRDLLS-R-M--- 75 (775)
Q Consensus 20 ~~~l~~~l~~~kr~LlVlDdv~~~~-------------~----~~~l~~~~~~--~~~gs~iivTTR~~~v~~-~-~--- 75 (775)
...+.+........+|++||++... . ...+...+.. ...+..||.||....... . .
T Consensus 87 ~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~ 166 (262)
T 2qz4_A 87 VRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPG 166 (262)
T ss_dssp HHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTT
T ss_pred HHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCC
Confidence 3444555544567899999998641 1 1112111111 234567777776553221 1 1
Q ss_pred CCCceEEcCCCCHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHhCCCch
Q 042822 76 GSEADVRMDILNEEEAWRLFEVKLGNDGLIRRMKSTATQIVKQCGGLPI 124 (775)
Q Consensus 76 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPL 124 (775)
.....+.++..+.++-.+++..++...............+++.+.|.+-
T Consensus 167 R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 167 RLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp SCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCH
T ss_pred cCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCH
Confidence 1235788999999999999998873221111212234678888888754
No 190
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=69.41 E-value=25 Score=35.51 Aligned_cols=114 Identities=11% Similarity=-0.018 Sum_probs=70.1
Q ss_pred cHHHHHHHHHHHHhcCCcEEEEEEcCCC---chhhhhccccCCCCCCCcEEEEEeCC-------hHHHhhc-CCCceEEc
Q 042822 15 TEHARASMLYAQLKKSRKILVILDNVWT---ELHLKDVGIPFGDEHKGCKVLLTTRG-------RDLLSRM-GSEADVRM 83 (775)
Q Consensus 15 ~~~~~~~~l~~~l~~~kr~LlVlDdv~~---~~~~~~l~~~~~~~~~gs~iivTTR~-------~~v~~~~-~~~~~~~l 83 (775)
+..+..+.+...=.-+++=++|+|++.. .+.++.+...+.....++.+|++|-. ..+.+.+ .....++.
T Consensus 60 ~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~ 139 (343)
T 1jr3_D 60 DWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTC 139 (343)
T ss_dssp CHHHHHHHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEE
T ss_pred CHHHHHHHhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEe
Confidence 3444444433321226677888899865 34566665555544567777776643 2344443 34568999
Q ss_pred CCCCHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHhCCCchhHHHH
Q 042822 84 DILNEEEAWRLFEVKLGNDGLIRRMKSTATQIVKQCGGLPIALEPI 129 (775)
Q Consensus 84 ~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 129 (775)
.+++.++-.+.....+......-+ .+.+..+++.++|-..++...
T Consensus 140 ~~l~~~~l~~~l~~~~~~~g~~i~-~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 140 QTPEQAQLPRWVAARAKQLNLELD-DAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp CCCCTTHHHHHHHHHHHHTTCEEC-HHHHHHHHHSSTTCHHHHHHH
T ss_pred eCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhchHHHHHHHH
Confidence 999999988888887722111111 355778889999988777543
No 191
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=64.30 E-value=85 Score=31.11 Aligned_cols=108 Identities=15% Similarity=0.190 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhcCCcEEEEEEcCCCchh-------------hhhccc---cCCCCCCCcEEEEEeCChHH-----Hhhc
Q 042822 17 HARASMLYAQLKKSRKILVILDNVWTELH-------------LKDVGI---PFGDEHKGCKVLLTTRGRDL-----LSRM 75 (775)
Q Consensus 17 ~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~~---~~~~~~~gs~iivTTR~~~v-----~~~~ 75 (775)
......+.+...+.+..+|++|++..... ...+.. .+.....+..||.||..... ...
T Consensus 96 ~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~R- 174 (322)
T 3eie_A 96 EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRR- 174 (322)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHH-
T ss_pred HHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcc-
Confidence 44455666666656778999999975311 111211 11123456677778876422 222
Q ss_pred CCCceEEcCCCCHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHhCCC-chhHH
Q 042822 76 GSEADVRMDILNEEEAWRLFEVKLGNDGLIRRMKSTATQIVKQCGGL-PIALE 127 (775)
Q Consensus 76 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~gl-PLai~ 127 (775)
-...+.++..+.++-.+++..++......-. ......+++.+.|. +-.|.
T Consensus 175 -f~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~l~~la~~t~g~sg~di~ 225 (322)
T 3eie_A 175 -FERRIYIPLPDLAARTTMFEINVGDTPCVLT-KEDYRTLGAMTEGYSGSDIA 225 (322)
T ss_dssp -CCEEEECCCCCHHHHHHHHHHHHTTCCCCCC-HHHHHHHHHTTTTCCHHHHH
T ss_pred -cCeEEEeCCCCHHHHHHHHHHHhccCCCCCC-HHHHHHHHHHcCCCCHHHHH
Confidence 2356788999999999999998844321111 23456788888774 43343
No 192
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=60.84 E-value=17 Score=36.83 Aligned_cols=96 Identities=9% Similarity=0.016 Sum_probs=60.3
Q ss_pred CcEEEEEEcCCCch--hhhhccccCCCCCCCcEEEEEeCChH-HHhh-cCCCceEEcCCCCHHHHHHHHHHHhCCC--CC
Q 042822 31 RKILVILDNVWTEL--HLKDVGIPFGDEHKGCKVLLTTRGRD-LLSR-MGSEADVRMDILNEEEAWRLFEVKLGND--GL 104 (775)
Q Consensus 31 kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~--~~ 104 (775)
++-+|++|++.... ..+.+...+.......++|++|.... +... ......+.+.+++.++..+.+...+... ..
T Consensus 133 ~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i 212 (353)
T 1sxj_D 133 PYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKC 212 (353)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCC
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCCC
Confidence 45699999987652 23333333333334567777775432 1111 1112478999999999999998877322 22
Q ss_pred cchhhHHHHHHHHHhCCCchhHHHH
Q 042822 105 IRRMKSTATQIVKQCGGLPIALEPI 129 (775)
Q Consensus 105 ~~~~~~~~~~i~~~c~glPLai~~~ 129 (775)
+ .+..+.|++.++|.|-.+..+
T Consensus 213 ~---~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 213 D---DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp C---HHHHHHHHHHTSSCHHHHHHH
T ss_pred C---HHHHHHHHHHcCCCHHHHHHH
Confidence 2 356788999999999875544
No 193
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=59.00 E-value=85 Score=31.69 Aligned_cols=108 Identities=14% Similarity=0.186 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhcCCcEEEEEEcCCCchh-------------hhhccccC---CCCCCCcEEEEEeCChH-----HHhhcC
Q 042822 18 ARASMLYAQLKKSRKILVILDNVWTELH-------------LKDVGIPF---GDEHKGCKVLLTTRGRD-----LLSRMG 76 (775)
Q Consensus 18 ~~~~~l~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~~~~---~~~~~gs~iivTTR~~~-----v~~~~~ 76 (775)
.....+.......+..+|++|++..... ...+...+ .....+..||.||.... +.. .
T Consensus 130 ~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--R 207 (355)
T 2qp9_X 130 KLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--R 207 (355)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH--T
T ss_pred HHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc--c
Confidence 3445555555546889999999985420 11111111 12234566776776442 222 2
Q ss_pred CCceEEcCCCCHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHhCCC-chhHHH
Q 042822 77 SEADVRMDILNEEEAWRLFEVKLGNDGLIRRMKSTATQIVKQCGGL-PIALEP 128 (775)
Q Consensus 77 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~gl-PLai~~ 128 (775)
....+.+...+.++-.+++..++......-. ......|++.+.|. +-.|..
T Consensus 208 f~~~i~i~~P~~~~r~~il~~~l~~~~~~~~-~~~l~~la~~t~G~sg~dl~~ 259 (355)
T 2qp9_X 208 FERRIYIPLPDLAARTTMFEINVGDTPSVLT-KEDYRTLGAMTEGYSGSDIAV 259 (355)
T ss_dssp CCEEEECCCCCHHHHHHHHHHHHTTSCBCCC-HHHHHHHHHHTTTCCHHHHHH
T ss_pred cCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHcCCCCHHHHHH
Confidence 3357889999999999999988843321111 23456788888884 433433
No 194
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=58.24 E-value=15 Score=36.50 Aligned_cols=67 Identities=12% Similarity=0.148 Sum_probs=44.0
Q ss_pred CcEEEEEEcCCCc-----------hhhhhccccCCCCCCCcEEEEEeCChHH----------HhhcCCCceEEcCCCCHH
Q 042822 31 RKILVILDNVWTE-----------LHLKDVGIPFGDEHKGCKVLLTTRGRDL----------LSRMGSEADVRMDILNEE 89 (775)
Q Consensus 31 kr~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~iivTTR~~~v----------~~~~~~~~~~~l~~L~~~ 89 (775)
+.-+|++|+++.. +....+...+.....+.+||+||..... ...+ ...+.+++++.+
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~ 207 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDE 207 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHH
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHH
Confidence 3458999999833 2233444344344456688888865322 2222 257899999999
Q ss_pred HHHHHHHHHh
Q 042822 90 EAWRLFEVKL 99 (775)
Q Consensus 90 ~~~~Lf~~~a 99 (775)
+-.+++...+
T Consensus 208 ~~~~il~~~l 217 (309)
T 3syl_A 208 ELFEIAGHML 217 (309)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998887
No 195
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=57.07 E-value=87 Score=31.09 Aligned_cols=109 Identities=11% Similarity=0.141 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhcCCcEEEEEEcCCCchh-------------hhhcccc---CCCCCCCcEEEEEeCChH-----HHhhc
Q 042822 17 HARASMLYAQLKKSRKILVILDNVWTELH-------------LKDVGIP---FGDEHKGCKVLLTTRGRD-----LLSRM 75 (775)
Q Consensus 17 ~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~~~---~~~~~~gs~iivTTR~~~-----v~~~~ 75 (775)
+.....+.+.....+..+|++|++..... ...+... +.....+-.||.||.... +..
T Consensus 91 ~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~r-- 168 (322)
T 1xwi_A 91 EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR-- 168 (322)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHH--
T ss_pred HHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHh--
Confidence 44556666666556889999999976410 0111111 111234556666775432 222
Q ss_pred CCCceEEcCCCCHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHhCCCch-hHHH
Q 042822 76 GSEADVRMDILNEEEAWRLFEVKLGNDGLIRRMKSTATQIVKQCGGLPI-ALEP 128 (775)
Q Consensus 76 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPL-ai~~ 128 (775)
.....+.++..+.++-.+++..++......-. ......|++.+.|..- .|..
T Consensus 169 Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~-~~~l~~la~~t~G~sgadl~~ 221 (322)
T 1xwi_A 169 RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT-EADFRELGRKTDGYSGADISI 221 (322)
T ss_dssp TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC-HHHHHHHHHTCTTCCHHHHHH
T ss_pred hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHcCCCCHHHHHH
Confidence 23357889999999999999988743221111 2346778888888643 3443
No 196
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=56.78 E-value=57 Score=33.04 Aligned_cols=112 Identities=8% Similarity=0.056 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhcCCcEEEEEEcCCCc-------------hhhhhccccCC----CCCCCcEEEEEeCChH-HHhh--cC
Q 042822 17 HARASMLYAQLKKSRKILVILDNVWTE-------------LHLKDVGIPFG----DEHKGCKVLLTTRGRD-LLSR--MG 76 (775)
Q Consensus 17 ~~~~~~l~~~l~~~kr~LlVlDdv~~~-------------~~~~~l~~~~~----~~~~gs~iivTTR~~~-v~~~--~~ 76 (775)
......+.......+..+|+||++... .....+...+. ....+..||.||.... +... -.
T Consensus 162 ~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R 241 (357)
T 3d8b_A 162 EKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRR 241 (357)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTT
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhh
Confidence 344455555555467899999999532 01122211111 1233556676776532 1111 12
Q ss_pred CCceEEcCCCCHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHhCC-CchhHHHH
Q 042822 77 SEADVRMDILNEEEAWRLFEVKLGNDGLIRRMKSTATQIVKQCGG-LPIALEPI 129 (775)
Q Consensus 77 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~ 129 (775)
....+.+...+.++..+++...+......- -.+....|++.+.| .+-+|..+
T Consensus 242 f~~~i~i~~p~~~~r~~il~~~~~~~~~~l-~~~~l~~la~~t~G~s~~dl~~l 294 (357)
T 3d8b_A 242 LVKRLYIPLPEASARKQIVINLMSKEQCCL-SEEEIEQIVQQSDAFSGADMTQL 294 (357)
T ss_dssp CCEEEECCCCCHHHHHHHHHHHHHTSCBCC-CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CceEEEeCCcCHHHHHHHHHHHHhhcCCCc-cHHHHHHHHHHcCCCCHHHHHHH
Confidence 234788999999999999988873221110 12456778888888 44455544
No 197
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=55.81 E-value=22 Score=35.55 Aligned_cols=90 Identities=17% Similarity=0.170 Sum_probs=53.8
Q ss_pred CcEEEEEEcCCCch---hh-hhccccCCC-CCCCcEEEEEeCCh---------HHHhhcCCCceEEcCCCCHHHHHHHHH
Q 042822 31 RKILVILDNVWTEL---HL-KDVGIPFGD-EHKGCKVLLTTRGR---------DLLSRMGSEADVRMDILNEEEAWRLFE 96 (775)
Q Consensus 31 kr~LlVlDdv~~~~---~~-~~l~~~~~~-~~~gs~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~ 96 (775)
+.-+|++||+.... .+ +.+...+.. ...|.+||+||... .+...+.....+++++ +.++-.+++.
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~ 176 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIK 176 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHH
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHH
Confidence 35688999997653 22 222222210 12355788887632 2233344446799999 9999999999
Q ss_pred HHhC--CCCCcchhhHHHHHHHHHhCCCchh
Q 042822 97 VKLG--NDGLIRRMKSTATQIVKQCGGLPIA 125 (775)
Q Consensus 97 ~~a~--~~~~~~~~~~~~~~i~~~c~glPLa 125 (775)
..+. ....+ .+....|++.+ |..-.
T Consensus 177 ~~~~~~~~~l~---~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 177 EKLKEFNLELR---KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHTTCCCC---HHHHHHHHHHC-SSHHH
T ss_pred HHHHhcCCCCC---HHHHHHHHHhC-CCHHH
Confidence 8872 22222 34566778888 66543
No 198
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=55.64 E-value=52 Score=34.62 Aligned_cols=102 Identities=13% Similarity=0.034 Sum_probs=58.8
Q ss_pred cCCcEEEEEEcCCCch--hhhhccccCCCCCCCcEEEEEeCChH--HH-hhcCCCceEEcCCCCHHHHHHHHHHHhCC-C
Q 042822 29 KSRKILVILDNVWTEL--HLKDVGIPFGDEHKGCKVLLTTRGRD--LL-SRMGSEADVRMDILNEEEAWRLFEVKLGN-D 102 (775)
Q Consensus 29 ~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~~--v~-~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~-~ 102 (775)
.+++.+|++|+|.... +.+.+...+.. +.-.-|..||.+.. +. ....-...+.+++++.++-.+++...+.. .
T Consensus 104 ~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~ 182 (447)
T 3pvs_A 104 AGRRTILFVDEVHRFNKSQQDAFLPHIED-GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKT 182 (447)
T ss_dssp TTCCEEEEEETTTCC------CCHHHHHT-TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTT
T ss_pred cCCCcEEEEeChhhhCHHHHHHHHHHHhc-CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHh
Confidence 3688999999998753 33333333322 22222334555542 11 11223357899999999999999988722 1
Q ss_pred -----CCcchhhHHHHHHHHHhCCCchhHHHHHH
Q 042822 103 -----GLIRRMKSTATQIVKQCGGLPIALEPIAK 131 (775)
Q Consensus 103 -----~~~~~~~~~~~~i~~~c~glPLai~~~g~ 131 (775)
....--.+....+++.++|.+-.+..+-.
T Consensus 183 ~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le 216 (447)
T 3pvs_A 183 RGYGGQDIVLPDETRRAIAELVNGDARRALNTLE 216 (447)
T ss_dssp TSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred hhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 11111235677888889998876654433
No 199
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=48.78 E-value=1.3e+02 Score=30.83 Aligned_cols=110 Identities=18% Similarity=0.170 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhcCCcEEEEEEcCCCch-------------hhhhccccC---C-CCCCCcEEEEEeCChHHHh-h-c-CC
Q 042822 18 ARASMLYAQLKKSRKILVILDNVWTEL-------------HLKDVGIPF---G-DEHKGCKVLLTTRGRDLLS-R-M-GS 77 (775)
Q Consensus 18 ~~~~~l~~~l~~~kr~LlVlDdv~~~~-------------~~~~l~~~~---~-~~~~gs~iivTTR~~~v~~-~-~-~~ 77 (775)
.....+.+.....+..+|+||+|.... ....+...+ . .....-+||.||....... . . ..
T Consensus 194 ~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~ 273 (389)
T 3vfd_A 194 KLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRF 273 (389)
T ss_dssp HHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTC
T ss_pred HHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCc
Confidence 344555555554566899999996440 011111111 1 1123456666776532211 1 1 12
Q ss_pred CceEEcCCCCHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHhCCCch-hHHH
Q 042822 78 EADVRMDILNEEEAWRLFEVKLGNDGLIRRMKSTATQIVKQCGGLPI-ALEP 128 (775)
Q Consensus 78 ~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPL-ai~~ 128 (775)
...+.++..+.++-.+++...+......- -.+....+++.+.|..- +|..
T Consensus 274 ~~~i~i~~p~~~~r~~il~~~~~~~~~~l-~~~~~~~la~~~~g~~~~~l~~ 324 (389)
T 3vfd_A 274 IKRVYVSLPNEETRLLLLKNLLCKQGSPL-TQKELAQLARMTDGYSGSDLTA 324 (389)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHTTSCCCS-CHHHHHHHHHHTTTCCHHHHHH
T ss_pred ceEEEcCCcCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHcCCCCHHHHHH
Confidence 34688999999999999998884322111 12356788888888654 4433
No 200
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=48.31 E-value=25 Score=37.90 Aligned_cols=96 Identities=8% Similarity=0.053 Sum_probs=56.7
Q ss_pred CCcEEEEEEcCCCchh-----hhhccccCCCCCCCcEEEEEeCChH---HHhhcCCCceEEcCCCCHHHHHHHHHHHhC-
Q 042822 30 SRKILVILDNVWTELH-----LKDVGIPFGDEHKGCKVLLTTRGRD---LLSRMGSEADVRMDILNEEEAWRLFEVKLG- 100 (775)
Q Consensus 30 ~kr~LlVlDdv~~~~~-----~~~l~~~~~~~~~gs~iivTTR~~~---v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~- 100 (775)
+++.+||+|+|..... +..+...+.. .+..||++|.... +.........+.+++++.++..+.+...+.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~ 224 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIR 224 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 5778999999976421 2222222211 2234666655432 222222345799999999999999988772
Q ss_pred -CCCCcchhhHHHHHHHHHhCCC-chhHHHHH
Q 042822 101 -NDGLIRRMKSTATQIVKQCGGL-PIALEPIA 130 (775)
Q Consensus 101 -~~~~~~~~~~~~~~i~~~c~gl-PLai~~~g 130 (775)
..... .+....|++.++|- +-|+..+.
T Consensus 225 ~~~~i~---~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 225 EKFKLD---PNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp HTCCCC---TTHHHHHHHHTTTCHHHHHHHHT
T ss_pred cCCCCC---HHHHHHHHHHcCCcHHHHHHHHH
Confidence 21222 24477889999994 45555543
No 201
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=44.73 E-value=20 Score=35.80 Aligned_cols=101 Identities=8% Similarity=0.039 Sum_probs=56.4
Q ss_pred CcEEEEEEcCCCch---hhhhccccCCCCCCCcEEEEEeCChHH-Hhh-cCCCceEEcCCCCHHHHHHHHH-------HH
Q 042822 31 RKILVILDNVWTEL---HLKDVGIPFGDEHKGCKVLLTTRGRDL-LSR-MGSEADVRMDILNEEEAWRLFE-------VK 98 (775)
Q Consensus 31 kr~LlVlDdv~~~~---~~~~l~~~~~~~~~gs~iivTTR~~~v-~~~-~~~~~~~~l~~L~~~~~~~Lf~-------~~ 98 (775)
++-+||+||+.... ..+.+...+.....+.++|+||....- ... ..-...+++++++.++-.+++. ..
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~ 184 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEI 184 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 67899999998764 233333332222345678888876431 110 0112479999999888544332 22
Q ss_pred hC--CCCCcchhhHHHHHHHHHhCCCchhHHHHHHHH
Q 042822 99 LG--NDGLIRRMKSTATQIVKQCGGLPIALEPIAKAL 133 (775)
Q Consensus 99 a~--~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L 133 (775)
+. ....++ .+....+++.++|.+-.+...-...
T Consensus 185 ~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~~~L~~~ 219 (324)
T 3u61_B 185 CKHEGIAIAD--MKVVAALVKKNFPDFRKTIGELDSY 219 (324)
T ss_dssp HHHHTCCBSC--HHHHHHHHHHTCSCTTHHHHHHHHH
T ss_pred HHHcCCCCCc--HHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 21 111111 2567788899988776544433333
No 202
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=43.99 E-value=72 Score=31.69 Aligned_cols=96 Identities=13% Similarity=0.072 Sum_probs=49.7
Q ss_pred hHHHHhCCCC-ccccHHHHHHHHHHHH--hcCCcEEEEEEcCCCchhhhhccccC--C--CCCCCcEEEEEeCChHH---
Q 042822 2 EIAEQIGLTL-DKETEHARASMLYAQL--KKSRKILVILDNVWTELHLKDVGIPF--G--DEHKGCKVLLTTRGRDL--- 71 (775)
Q Consensus 2 ~i~~~l~~~~-~~~~~~~~~~~l~~~l--~~~kr~LlVlDdv~~~~~~~~l~~~~--~--~~~~gs~iivTTR~~~v--- 71 (775)
+|++++.... ......+....+.+.+ ..+++++||||+++...+-+.+...+ + ..++. .||.++...+.
T Consensus 100 ~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~-~vI~i~n~~d~~~~ 178 (318)
T 3te6_A 100 KIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKL-SIICVGGHNVTIRE 178 (318)
T ss_dssp HHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCE-EEEEECCSSCCCHH
T ss_pred HHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcE-EEEEEecCcccchh
Confidence 3566663321 1112223334444443 22578999999998753211111111 1 11222 24444543211
Q ss_pred ------HhhcCCCceEEcCCCCHHHHHHHHHHHh
Q 042822 72 ------LSRMGSEADVRMDILNEEEAWRLFEVKL 99 (775)
Q Consensus 72 ------~~~~~~~~~~~l~~L~~~~~~~Lf~~~a 99 (775)
...++ ...+..+|.+.++-.+++..++
T Consensus 179 ~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 179 QINIMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred hcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 11222 2468999999999999999887
No 203
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=43.86 E-value=1.8e+02 Score=30.36 Aligned_cols=103 Identities=12% Similarity=0.171 Sum_probs=59.6
Q ss_pred HHHHHHHHhcCCcEEEEEEcCCCch-------------hhhhccccCCC---CCCCcEEEEEeCChHHHh-h-c-CCCce
Q 042822 20 ASMLYAQLKKSRKILVILDNVWTEL-------------HLKDVGIPFGD---EHKGCKVLLTTRGRDLLS-R-M-GSEAD 80 (775)
Q Consensus 20 ~~~l~~~l~~~kr~LlVlDdv~~~~-------------~~~~l~~~~~~---~~~gs~iivTTR~~~v~~-~-~-~~~~~ 80 (775)
...+.+.....+..+|++|++.... ....+...+.. ...+..||.||....... . . .....
T Consensus 216 ~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~ 295 (444)
T 2zan_A 216 VKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKR 295 (444)
T ss_dssp HHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEE
T ss_pred HHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceE
Confidence 3445555554678899999998541 01122222211 235667777876542211 1 1 22357
Q ss_pred EEcCCCCHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHhCCCc
Q 042822 81 VRMDILNEEEAWRLFEVKLGNDGLIRRMKSTATQIVKQCGGLP 123 (775)
Q Consensus 81 ~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glP 123 (775)
+.+...+.++-..+|..++......-. ......|++.+.|..
T Consensus 296 i~i~~P~~~~r~~il~~~l~~~~~~l~-~~~l~~la~~t~G~s 337 (444)
T 2zan_A 296 IYIPLPEAHARAAMFRLHLGSTQNSLT-EADFQELGRKTDGYS 337 (444)
T ss_dssp EECCCCCHHHHHHHHHHHHTTSCEECC-HHHHHHHHHHTTTCC
T ss_pred EEeCCcCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHcCCCC
Confidence 888889999999999988743221101 234567888888843
No 204
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=41.38 E-value=90 Score=31.50 Aligned_cols=88 Identities=11% Similarity=0.085 Sum_probs=52.2
Q ss_pred EEEEEEcCCCch--hhhhccccCCCCCCCcEEEEEeCC-----------------hHHHhhcCCCceEEcCCCCHHHHHH
Q 042822 33 ILVILDNVWTEL--HLKDVGIPFGDEHKGCKVLLTTRG-----------------RDLLSRMGSEADVRMDILNEEEAWR 93 (775)
Q Consensus 33 ~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~-----------------~~v~~~~~~~~~~~l~~L~~~~~~~ 93 (775)
.+|++|++.... ..+.+...+...... .++++|.. ..+...+ ..+.+++++.++..+
T Consensus 191 ~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~---~~i~~~~~~~~e~~~ 266 (368)
T 3uk6_A 191 GVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRL---LIVSTTPYSEKDTKQ 266 (368)
T ss_dssp CEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTE---EEEEECCCCHHHHHH
T ss_pred ceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhc---cEEEecCCCHHHHHH
Confidence 499999998752 233333333322222 34444431 2222222 358999999999999
Q ss_pred HHHHHhCC--CCCcchhhHHHHHHHHHhC-CCchhHH
Q 042822 94 LFEVKLGN--DGLIRRMKSTATQIVKQCG-GLPIALE 127 (775)
Q Consensus 94 Lf~~~a~~--~~~~~~~~~~~~~i~~~c~-glPLai~ 127 (775)
++..++.. ...+ .+....|++.+. |.|-.+.
T Consensus 267 il~~~~~~~~~~~~---~~~l~~l~~~~~~G~~r~~~ 300 (368)
T 3uk6_A 267 ILRIRCEEEDVEMS---EDAYTVLTRIGLETSLRYAI 300 (368)
T ss_dssp HHHHHHHHTTCCBC---HHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHcCCCCC---HHHHHHHHHHhcCCCHHHHH
Confidence 99988732 2222 345677888887 7765543
No 205
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=37.92 E-value=61 Score=32.38 Aligned_cols=100 Identities=11% Similarity=0.060 Sum_probs=58.5
Q ss_pred CCcEEEEEEcCCCch--hhhhccccCCC------------------CCCCcEEEEEeCChHHH-hh-c-CCCceEEcCCC
Q 042822 30 SRKILVILDNVWTEL--HLKDVGIPFGD------------------EHKGCKVLLTTRGRDLL-SR-M-GSEADVRMDIL 86 (775)
Q Consensus 30 ~kr~LlVlDdv~~~~--~~~~l~~~~~~------------------~~~gs~iivTTR~~~v~-~~-~-~~~~~~~l~~L 86 (775)
.+...|++|++.... ....+...+.. ..++.++|.||...... .. . .....+.++++
T Consensus 105 ~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~ 184 (338)
T 3pfi_A 105 SEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFY 184 (338)
T ss_dssp CTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCC
T ss_pred cCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCc
Confidence 467899999998752 11222111111 01134667666653221 11 1 12368999999
Q ss_pred CHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHhCCCchhHHHHH
Q 042822 87 NEEEAWRLFEVKLGNDGLIRRMKSTATQIVKQCGGLPIALEPIA 130 (775)
Q Consensus 87 ~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 130 (775)
+.++..+++...+...... --.+....+++.+.|.|-.+..+.
T Consensus 185 ~~~e~~~il~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 185 KDSELALILQKAALKLNKT-CEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp CHHHHHHHHHHHHHHTTCE-ECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHCcCHHHHHHHH
Confidence 9999999999887322111 113557788889999986554443
No 206
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=33.01 E-value=19 Score=32.18 Aligned_cols=73 Identities=10% Similarity=0.058 Sum_probs=39.5
Q ss_pred HHHHHHH-hcCCcEEEEEEcCCCch---------h-hhhccccCCCCCCCcEEEEEeCChHHHhh-------cCCCceEE
Q 042822 21 SMLYAQL-KKSRKILVILDNVWTEL---------H-LKDVGIPFGDEHKGCKVLLTTRGRDLLSR-------MGSEADVR 82 (775)
Q Consensus 21 ~~l~~~l-~~~kr~LlVlDdv~~~~---------~-~~~l~~~~~~~~~gs~iivTTR~~~v~~~-------~~~~~~~~ 82 (775)
..+.+.+ ..+++.+||+||++... . .+.+...+ .. .+..+|+||........ ..-...+.
T Consensus 104 ~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~-~~-~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~ 181 (195)
T 1jbk_A 104 KGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL-AR-GELHCVGATTLDEYRQYIEKDAALERRFQKVF 181 (195)
T ss_dssp HHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHH-HT-TSCCEEEEECHHHHHHHTTTCHHHHTTEEEEE
T ss_pred HHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhh-cc-CCeEEEEeCCHHHHHHHHhcCHHHHHHhceee
Confidence 3344433 23578899999997642 1 11122111 22 23457777765542211 12223688
Q ss_pred cCCCCHHHHHHHH
Q 042822 83 MDILNEEEAWRLF 95 (775)
Q Consensus 83 l~~L~~~~~~~Lf 95 (775)
+++++.++..+++
T Consensus 182 ~~~p~~~~~~~il 194 (195)
T 1jbk_A 182 VAEPSVEDTIAIL 194 (195)
T ss_dssp CCCCCHHHHHTTC
T ss_pred cCCCCHHHHHHHh
Confidence 9999988876653
No 207
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=30.01 E-value=3.7e+02 Score=25.67 Aligned_cols=110 Identities=16% Similarity=0.156 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEEcCCCchh-------------hhhcc---ccCCC--CCCCcEEEEEeCChH-----HH
Q 042822 16 EHARASMLYAQLKKSRKILVILDNVWTELH-------------LKDVG---IPFGD--EHKGCKVLLTTRGRD-----LL 72 (775)
Q Consensus 16 ~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~---~~~~~--~~~gs~iivTTR~~~-----v~ 72 (775)
.......+.......+..+|++|++..... ...+. ..++. .+.+..||.||.... +.
T Consensus 98 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~ 177 (297)
T 3b9p_A 98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAAL 177 (297)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHH
Confidence 344455555555546788999999965310 00111 11111 123456777777542 22
Q ss_pred hhcCCCceEEcCCCCHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHhCCCch-hHHH
Q 042822 73 SRMGSEADVRMDILNEEEAWRLFEVKLGNDGLIRRMKSTATQIVKQCGGLPI-ALEP 128 (775)
Q Consensus 73 ~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPL-ai~~ 128 (775)
..+ ...+.+...+.++...++...+......-. .+....+++.+.|.+- ++..
T Consensus 178 ~R~--~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~~la~~~~g~~~~~l~~ 231 (297)
T 3b9p_A 178 RRF--TKRVYVSLPDEQTRELLLNRLLQKQGSPLD-TEALRRLAKITDGYSGSDLTA 231 (297)
T ss_dssp HHC--CEEEECCCCCHHHHHHHHHHHHGGGSCCSC-HHHHHHHHHHTTTCCHHHHHH
T ss_pred hhC--CeEEEeCCcCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHcCCCCHHHHHH
Confidence 222 256788888888888888887732111101 2346778888988875 4433
No 208
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=29.59 E-value=30 Score=31.58 Aligned_cols=50 Identities=20% Similarity=0.129 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCcEEEEEEcCCCch-----hhhhccccCCCCCCCcEEEEEeCCh
Q 042822 20 ASMLYAQLKKSRKILVILDNVWTEL-----HLKDVGIPFGDEHKGCKVLLTTRGR 69 (775)
Q Consensus 20 ~~~l~~~l~~~kr~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~iivTTR~~ 69 (775)
...+++.+..++-=|||||++-... ..+.+...+........||+|+|..
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 4445555553445599999994321 1222322333333456799999986
No 209
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=28.17 E-value=49 Score=32.68 Aligned_cols=79 Identities=16% Similarity=0.100 Sum_probs=52.0
Q ss_pred HHHHHHHHhc----CCcEEEEEEcCCCc--hhhhhccccCCCCCCCcEEEEEeCCh-HHHhhcCCCceEEcCCCCHHHHH
Q 042822 20 ASMLYAQLKK----SRKILVILDNVWTE--LHLKDVGIPFGDEHKGCKVLLTTRGR-DLLSRMGSEADVRMDILNEEEAW 92 (775)
Q Consensus 20 ~~~l~~~l~~----~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~-~v~~~~~~~~~~~l~~L~~~~~~ 92 (775)
++.+.+.... +++-++|+|+++.- +..+.+...+-.....+++|++|.+. .+.+.+... .+++.+++.++..
T Consensus 67 ir~li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~ 145 (305)
T 2gno_A 67 IRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFR 145 (305)
T ss_dssp HHHHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHH
T ss_pred HHHHHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHH
Confidence 3445555532 45678889999865 34455554444445667777776543 344444444 8999999999999
Q ss_pred HHHHHHh
Q 042822 93 RLFEVKL 99 (775)
Q Consensus 93 ~Lf~~~a 99 (775)
+.+.+.+
T Consensus 146 ~~L~~~~ 152 (305)
T 2gno_A 146 DLVKEKI 152 (305)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9888776
No 210
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=26.34 E-value=1e+02 Score=30.70 Aligned_cols=92 Identities=14% Similarity=0.050 Sum_probs=55.1
Q ss_pred CcEEEEEEcCCCc--hhhhhccccCCCCCCCcEEEEEeCChH-HHhh-cCCCceEEcCCCCHHHHHHHHHHHhC--CCCC
Q 042822 31 RKILVILDNVWTE--LHLKDVGIPFGDEHKGCKVLLTTRGRD-LLSR-MGSEADVRMDILNEEEAWRLFEVKLG--NDGL 104 (775)
Q Consensus 31 kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~--~~~~ 104 (775)
.+-++|+|++... +..+.+...+.......++|++|.... +... ..-...+.+.+++.++..+.+...+. ....
T Consensus 110 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i 189 (340)
T 1sxj_C 110 GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKL 189 (340)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCB
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCC
Confidence 4678899998654 223333333322234567777775432 1111 12234789999999999888887762 2122
Q ss_pred cchhhHHHHHHHHHhCCCchh
Q 042822 105 IRRMKSTATQIVKQCGGLPIA 125 (775)
Q Consensus 105 ~~~~~~~~~~i~~~c~glPLa 125 (775)
. .+..+.|++.++|-+--
T Consensus 190 ~---~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 190 S---PNAEKALIELSNGDMRR 207 (340)
T ss_dssp C---HHHHHHHHHHHTTCHHH
T ss_pred C---HHHHHHHHHHcCCCHHH
Confidence 2 24567788888887764
No 211
>2gkw_B Tumor necrosis factor receptor superfamily member; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens}
Probab=22.92 E-value=56 Score=18.01 Aligned_cols=18 Identities=28% Similarity=0.385 Sum_probs=14.1
Q ss_pred cCCCCCCCcEEEEEeCCh
Q 042822 52 PFGDEHKGCKVLLTTRGR 69 (775)
Q Consensus 52 ~~~~~~~gs~iivTTR~~ 69 (775)
++|.-..|+-|+|||...
T Consensus 3 PlPa~eeGaT~lVtTKT~ 20 (26)
T 2gkw_B 3 PVPATELGSTELVTTKTA 20 (26)
T ss_pred cccccccCceEEEEeccC
Confidence 566667899999999754
No 212
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=22.26 E-value=2.2e+02 Score=27.56 Aligned_cols=41 Identities=10% Similarity=-0.015 Sum_probs=23.0
Q ss_pred CCcEEEEEeCChHHHh-h-c---CCCceEEcCCCCHHHHHHHHHHHhC
Q 042822 58 KGCKVLLTTRGRDLLS-R-M---GSEADVRMDILNEEEAWRLFEVKLG 100 (775)
Q Consensus 58 ~gs~iivTTR~~~v~~-~-~---~~~~~~~l~~L~~~~~~~Lf~~~a~ 100 (775)
.+..||.||...+... . . .-...+.+ | +.++-.+++.....
T Consensus 154 ~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~-P-~~~~r~~Il~~~~~ 199 (293)
T 3t15_A 154 ARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-P-TREDRIGVCTGIFR 199 (293)
T ss_dssp CCCCEEEECSSCCC--CHHHHHHHEEEEEEC-C-CHHHHHHHHHHHHG
T ss_pred CCcEEEEecCCcccCCHHHhCCCCCceeEeC-c-CHHHHHHHHHHhcc
Confidence 3556888887542111 1 0 11123444 3 88888899887763
No 213
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.54 E-value=5.7e+02 Score=26.14 Aligned_cols=106 Identities=10% Similarity=0.195 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEEcCCCch----------h------hhhccccCC--CCCCCcEEEEEeCChHHHh----
Q 042822 16 EHARASMLYAQLKKSRKILVILDNVWTEL----------H------LKDVGIPFG--DEHKGCKVLLTTRGRDLLS---- 73 (775)
Q Consensus 16 ~~~~~~~l~~~l~~~kr~LlVlDdv~~~~----------~------~~~l~~~~~--~~~~gs~iivTTR~~~v~~---- 73 (775)
.+..+..+++..++...+.|++|+++... + ...+...+. ....+-.||.||...+...
T Consensus 226 se~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAll 305 (405)
T 4b4t_J 226 GSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALL 305 (405)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHH
T ss_pred HHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHc
Confidence 45667777777776789999999997531 0 111111111 2334556777886553321
Q ss_pred hc-CCCceEEcCCCCHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHhCCCc
Q 042822 74 RM-GSEADVRMDILNEEEAWRLFEVKLGNDGLIRRMKSTATQIVKQCGGLP 123 (775)
Q Consensus 74 ~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glP 123 (775)
.. .-...+.++..+.++-.++|+.+.......++. + ...+++.+.|.-
T Consensus 306 RpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dv-d-l~~lA~~t~G~S 354 (405)
T 4b4t_J 306 RPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGI-N-LRKVAEKMNGCS 354 (405)
T ss_dssp STTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSC-C-HHHHHHHCCSCC
T ss_pred CCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccC-C-HHHHHHHCCCCC
Confidence 11 235689999999999999998887432221111 1 356677777754
No 214
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=20.53 E-value=2.9e+02 Score=26.79 Aligned_cols=103 Identities=9% Similarity=0.203 Sum_probs=56.8
Q ss_pred HHHHHHHhcCCcEEEEEEcCCCchh----------------hhhccccCC--CCCCCcEEEEEeCChHHH-hh-cC---C
Q 042822 21 SMLYAQLKKSRKILVILDNVWTELH----------------LKDVGIPFG--DEHKGCKVLLTTRGRDLL-SR-MG---S 77 (775)
Q Consensus 21 ~~l~~~l~~~kr~LlVlDdv~~~~~----------------~~~l~~~~~--~~~~gs~iivTTR~~~v~-~~-~~---~ 77 (775)
..+.+........+|++|++..... ...+...+. ....+..||.||...... .. .. -
T Consensus 98 ~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf 177 (301)
T 3cf0_A 98 REIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRL 177 (301)
T ss_dssp HHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSS
T ss_pred HHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCcc
Confidence 3444444435679999999974210 111211111 123456788888765322 11 11 2
Q ss_pred CceEEcCCCCHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHhCCCchh
Q 042822 78 EADVRMDILNEEEAWRLFEVKLGNDGLIRRMKSTATQIVKQCGGLPIA 125 (775)
Q Consensus 78 ~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLa 125 (775)
...+.++..+.++-.+++..+........+. + ...+++.+.|.|-+
T Consensus 178 ~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~-~-~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 178 DQLIYIPLPDEKSRVAILKANLRKSPVAKDV-D-LEFLAKMTNGFSGA 223 (301)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHTTSCBCSSC-C-HHHHHHTCSSCCHH
T ss_pred ceEEecCCcCHHHHHHHHHHHHccCCCCccc-h-HHHHHHHcCCCCHH
Confidence 3578999999999999998887432211111 1 23556667776643
Done!