Query 042824
Match_columns 94
No_of_seqs 121 out of 1234
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 17:18:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042824.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042824hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ptm_A Hyperpolarization-activ 99.8 1.3E-18 4.6E-23 105.2 10.4 87 3-91 45-131 (198)
2 3bpz_A Potassium/sodium hyperp 99.8 1.4E-18 4.6E-23 105.5 9.9 88 3-92 46-133 (202)
3 3ukn_A Novel protein similar t 99.7 9.9E-18 3.4E-22 102.2 6.3 83 2-85 49-131 (212)
4 4f8a_A Potassium voltage-gated 99.7 6.3E-17 2.2E-21 94.3 7.7 79 7-85 5-83 (160)
5 3ocp_A PRKG1 protein; serine/t 99.5 3.9E-14 1.3E-18 81.0 5.5 73 13-85 7-79 (139)
6 3mdp_A Cyclic nucleotide-bindi 99.5 3.6E-14 1.2E-18 81.0 5.0 66 28-93 5-70 (142)
7 2z69_A DNR protein; beta barre 99.5 2.6E-13 8.9E-18 78.3 8.5 67 27-93 10-76 (154)
8 2pqq_A Putative transcriptiona 99.5 1.6E-13 5.4E-18 78.8 7.0 66 28-93 4-69 (149)
9 3idb_B CAMP-dependent protein 99.5 5E-14 1.7E-18 82.4 4.8 71 22-93 31-101 (161)
10 3gyd_A CNMP-BD protein, cyclic 99.5 2.2E-13 7.6E-18 81.7 7.7 70 24-93 34-103 (187)
11 3dn7_A Cyclic nucleotide bindi 99.5 1.5E-13 5.1E-18 82.4 6.6 66 28-93 6-71 (194)
12 3dv8_A Transcriptional regulat 99.4 1.7E-13 6E-18 83.3 5.9 65 29-93 3-67 (220)
13 1wgp_A Probable cyclic nucleot 99.4 2.2E-13 7.4E-18 77.5 5.8 64 29-93 6-69 (137)
14 4ev0_A Transcription regulator 99.4 3.2E-13 1.1E-17 81.9 6.5 63 31-93 1-63 (216)
15 3fx3_A Cyclic nucleotide-bindi 99.4 2.7E-13 9.1E-18 83.5 5.9 67 27-93 9-75 (237)
16 3e97_A Transcriptional regulat 99.4 3.3E-13 1.1E-17 82.8 5.9 66 28-93 5-70 (231)
17 2d93_A RAP guanine nucleotide 99.4 1E-13 3.5E-18 78.8 3.1 65 26-92 13-78 (134)
18 3dkw_A DNR protein; CRP-FNR, H 99.4 3.7E-13 1.2E-17 82.2 5.7 67 27-93 7-73 (227)
19 3d0s_A Transcriptional regulat 99.4 4.6E-13 1.6E-17 81.9 5.2 66 28-93 5-70 (227)
20 3iwz_A CAP-like, catabolite ac 99.4 9E-13 3.1E-17 80.6 6.3 66 28-93 10-75 (230)
21 1zyb_A Transcription regulator 99.4 1.1E-12 3.9E-17 80.7 6.7 66 28-93 17-84 (232)
22 4ava_A Lysine acetyltransferas 99.4 2.5E-12 8.6E-17 82.7 7.7 66 27-92 11-76 (333)
23 3shr_A CGMP-dependent protein 99.3 1.4E-12 4.6E-17 82.9 5.4 73 13-85 23-95 (299)
24 3pna_A CAMP-dependent protein 99.3 6.8E-12 2.3E-16 72.8 7.8 61 25-85 34-94 (154)
25 1vp6_A CNBD, cyclic-nucleotide 99.3 5.1E-12 1.7E-16 71.8 6.8 60 27-86 9-68 (138)
26 1o7f_A CAMP-dependent RAP1 gua 99.3 4.2E-12 1.4E-16 85.0 6.8 78 14-91 27-104 (469)
27 2gau_A Transcriptional regulat 99.3 4E-12 1.4E-16 78.0 4.9 61 33-93 14-74 (232)
28 3tnp_B CAMP-dependent protein 99.3 5.9E-12 2E-16 83.8 5.7 70 22-92 138-207 (416)
29 3of1_A CAMP-dependent protein 99.2 3.1E-11 1.1E-15 74.2 7.4 59 27-85 5-63 (246)
30 3ryp_A Catabolite gene activat 99.2 2.6E-11 9E-16 73.1 6.0 59 35-93 2-60 (210)
31 2fmy_A COOA, carbon monoxide o 99.2 2.2E-12 7.4E-17 78.7 0.9 64 29-93 4-67 (220)
32 1ft9_A Carbon monoxide oxidati 99.2 1.3E-12 4.4E-17 79.8 -0.7 63 30-93 1-63 (222)
33 3shr_A CGMP-dependent protein 99.2 4.2E-11 1.4E-15 76.0 6.1 68 25-92 153-221 (299)
34 4f7z_A RAP guanine nucleotide 99.2 1.3E-10 4.5E-15 84.0 8.6 71 19-89 32-102 (999)
35 2qcs_B CAMP-dependent protein 99.1 6.6E-11 2.3E-15 74.7 5.5 62 24-85 34-95 (291)
36 4din_B CAMP-dependent protein 99.1 7.7E-11 2.6E-15 77.6 5.4 63 23-85 124-186 (381)
37 2qcs_B CAMP-dependent protein 99.1 6.3E-10 2.2E-14 70.1 9.4 66 25-90 153-218 (291)
38 3of1_A CAMP-dependent protein 99.1 3.5E-10 1.2E-14 69.5 7.9 62 26-87 122-183 (246)
39 2oz6_A Virulence factor regula 99.1 2.3E-10 8E-15 68.8 6.7 54 40-93 1-54 (207)
40 4din_B CAMP-dependent protein 99.1 2E-10 6.9E-15 75.6 6.7 67 25-91 244-310 (381)
41 3kcc_A Catabolite gene activat 99.0 3.9E-10 1.3E-14 70.5 5.6 57 37-93 54-110 (260)
42 3e6c_C CPRK, cyclic nucleotide 99.0 1E-10 3.5E-15 72.6 2.8 63 31-93 11-73 (250)
43 1o5l_A Transcriptional regulat 99.0 1.1E-10 3.8E-15 70.9 2.6 61 33-93 3-63 (213)
44 3tnp_B CAMP-dependent protein 99.0 7.1E-10 2.4E-14 73.8 6.4 63 27-89 265-327 (416)
45 1o7f_A CAMP-dependent RAP1 gua 99.0 7.8E-10 2.7E-14 74.0 6.2 61 26-86 334-395 (469)
46 2bgc_A PRFA; bacterial infecti 99.0 9.8E-10 3.4E-14 67.7 6.1 56 38-93 2-59 (238)
47 3cf6_E RAP guanine nucleotide 99.0 1.5E-09 5E-14 76.5 6.5 72 15-86 18-90 (694)
48 3la7_A Global nitrogen regulat 98.8 7.6E-09 2.6E-13 64.0 5.3 52 42-93 30-84 (243)
49 3beh_A MLL3241 protein; transm 98.8 7.6E-10 2.6E-14 72.1 -0.0 59 28-86 227-285 (355)
50 4f7z_A RAP guanine nucleotide 98.7 6.9E-08 2.4E-12 70.0 7.5 60 26-85 334-394 (999)
51 2zcw_A TTHA1359, transcription 98.7 2.2E-08 7.4E-13 60.2 3.9 45 49-93 2-48 (202)
52 3b02_A Transcriptional regulat 98.5 8.2E-08 2.8E-12 57.3 4.3 39 55-93 2-40 (195)
53 2xp1_A SPT6; transcription, IW 90.5 1.6 5.3E-05 25.9 6.5 52 33-90 13-67 (178)
54 3or8_A Transcription elongatio 80.6 5.9 0.0002 23.9 5.5 47 33-84 7-57 (197)
55 3rns_A Cupin 2 conserved barre 73.4 8.8 0.0003 23.1 5.0 34 52-85 39-72 (227)
56 3tbi_A RNA polymerase-associat 69.0 4 0.00014 22.4 2.4 26 2-27 68-93 (115)
57 3fjs_A Uncharacterized protein 68.3 10 0.00035 20.1 4.1 32 54-85 40-71 (114)
58 1r1p_A GRB2-related adaptor pr 61.5 15 0.00053 19.1 4.3 50 31-85 6-59 (100)
59 1dgw_A Canavalin; duplicated s 61.0 8.8 0.0003 22.3 3.1 37 53-89 44-80 (178)
60 2vqa_A SLL1358 protein, MNCA; 57.4 18 0.00062 23.2 4.3 36 55-90 57-93 (361)
61 1j58_A YVRK protein; cupin, de 57.3 19 0.00064 23.4 4.4 37 55-91 84-120 (385)
62 2ozj_A Cupin 2, conserved barr 57.0 12 0.00043 19.4 3.1 29 57-85 45-73 (114)
63 2phl_A Phaseolin; plant SEED s 56.1 9.8 0.00033 25.4 2.9 40 52-91 54-93 (397)
64 3us4_A Megakaryocyte-associate 55.1 20 0.00069 18.4 3.7 50 31-85 2-55 (98)
65 1yhf_A Hypothetical protein SP 53.6 22 0.00075 18.4 4.1 31 55-85 45-75 (115)
66 3kvp_A Uncharacterized protein 53.5 20 0.00068 17.9 3.3 22 71-92 30-51 (72)
67 4e2g_A Cupin 2 conserved barre 53.1 20 0.00067 18.9 3.5 31 55-85 46-76 (126)
68 3eaz_A Tyrosine-protein kinase 52.7 23 0.0008 18.4 3.8 50 31-85 5-58 (106)
69 2dlz_A Protein VAV-2; RHO fami 50.4 28 0.00096 18.7 4.7 34 31-69 13-47 (118)
70 3h8u_A Uncharacterized conserv 49.2 25 0.00087 18.5 3.5 32 54-85 43-75 (125)
71 2gu9_A Tetracenomycin polyketi 48.8 26 0.00088 17.8 3.8 31 55-85 26-59 (113)
72 2vqa_A SLL1358 protein, MNCA; 48.4 34 0.0012 21.9 4.5 37 55-91 239-276 (361)
73 1mil_A SHC adaptor protein; SH 47.9 14 0.00046 19.4 2.2 49 31-86 4-56 (104)
74 1d4t_A T cell signal transduct 47.8 29 0.00098 18.0 3.9 51 32-86 2-56 (104)
75 3ov1_A Growth factor receptor- 47.0 33 0.0011 18.4 4.1 52 31-86 3-58 (117)
76 3k2m_A Proto-oncogene tyrosine 45.7 32 0.0011 18.1 3.6 51 31-86 2-56 (112)
77 2kwv_A RAD30 homolog B, DNA po 45.6 12 0.0004 17.2 1.4 15 8-22 18-32 (48)
78 1uij_A Beta subunit of beta co 45.5 16 0.00055 24.4 2.7 37 52-88 51-87 (416)
79 2lnw_A VAV-2, guanine nucleoti 45.4 36 0.0012 18.4 5.2 37 31-72 19-56 (122)
80 2ea7_A 7S globulin-1; beta bar 45.2 22 0.00074 24.0 3.3 38 52-89 63-100 (434)
81 3lwc_A Uncharacterized protein 45.0 35 0.0012 18.3 3.9 30 55-85 45-74 (119)
82 2pfw_A Cupin 2, conserved barr 44.6 28 0.00096 17.9 3.2 31 55-85 39-69 (116)
83 2fqp_A Hypothetical protein BP 44.5 11 0.00038 19.1 1.5 31 55-85 23-54 (97)
84 2cav_A Protein (canavalin); vi 44.4 18 0.00061 24.5 2.8 36 54-89 90-125 (445)
85 3lag_A Uncharacterized protein 44.2 6.2 0.00021 20.6 0.5 32 54-85 21-53 (98)
86 3bcw_A Uncharacterized protein 41.6 26 0.00088 19.1 2.8 29 56-85 55-83 (123)
87 3h7j_A Bacilysin biosynthesis 41.4 39 0.0013 20.4 3.8 34 52-85 36-69 (243)
88 1ka6_A SH2 domain protein 1A; 41.2 43 0.0015 18.2 4.1 50 32-85 2-55 (128)
89 2o1q_A Putative acetyl/propion 41.1 21 0.00072 19.9 2.4 32 52-83 46-77 (145)
90 3ibm_A Cupin 2, conserved barr 40.8 36 0.0012 19.4 3.5 31 55-85 61-91 (167)
91 2b8m_A Hypothetical protein MJ 40.7 33 0.0011 17.8 3.1 30 56-85 33-62 (117)
92 2q1z_B Anti-sigma factor CHRR, 40.5 25 0.00087 20.7 2.8 30 53-82 128-157 (195)
93 1v70_A Probable antibiotics sy 40.2 35 0.0012 16.8 3.7 31 55-85 33-64 (105)
94 1vj2_A Novel manganese-contain 40.1 42 0.0015 17.8 3.7 31 55-85 53-83 (126)
95 2lh0_A Histone chaperone RTT10 38.8 19 0.00066 18.0 1.7 14 10-23 8-21 (70)
96 1dgw_X Canavalin; duplicated s 38.7 22 0.00074 18.0 2.0 47 45-91 31-78 (79)
97 1fxz_A Glycinin G1; proglycini 38.7 55 0.0019 22.4 4.5 38 54-91 342-380 (476)
98 1xw3_A Sulfiredoxin; retroredu 38.3 48 0.0017 17.9 3.6 47 34-80 24-72 (110)
99 4b29_A Dimethylsulfoniopropion 38.2 40 0.0014 20.7 3.4 28 58-85 140-167 (217)
100 3es4_A Uncharacterized protein 37.9 24 0.00081 19.3 2.2 33 56-91 48-80 (116)
101 1fxz_A Glycinin G1; proglycini 37.7 47 0.0016 22.7 4.0 40 52-91 50-89 (476)
102 2kk6_A Proto-oncogene tyrosine 37.6 28 0.00096 18.7 2.5 48 31-85 14-65 (116)
103 3c3v_A Arachin ARAH3 isoform; 37.2 63 0.0022 22.4 4.6 41 51-91 373-414 (510)
104 2e9q_A 11S globulin subunit be 37.2 54 0.0019 22.3 4.3 39 52-90 65-103 (459)
105 1sfn_A Conserved hypothetical 35.8 38 0.0013 20.6 3.2 34 52-85 167-201 (246)
106 2d5f_A Glycinin A3B4 subunit; 35.6 70 0.0024 22.0 4.6 46 46-91 363-409 (493)
107 2iug_A Phosphatidylinositol 3- 35.5 53 0.0018 17.6 4.3 50 30-84 7-61 (120)
108 3kgz_A Cupin 2 conserved barre 35.1 32 0.0011 19.5 2.6 30 56-85 50-79 (156)
109 3bb6_A Uncharacterized protein 35.0 61 0.0021 18.1 3.6 20 72-91 41-60 (127)
110 2f4p_A Hypothetical protein TM 34.5 58 0.002 17.9 3.6 31 55-85 53-83 (147)
111 1yzs_A Sulfiredoxin; PARB doma 34.3 61 0.0021 17.9 3.6 47 34-80 35-83 (121)
112 2vif_A Suppressor of cytokine 33.9 62 0.0021 17.9 4.0 50 30-84 20-73 (141)
113 2ecd_A Tyrosine-protein kinase 33.4 58 0.002 17.4 3.4 51 31-86 13-67 (119)
114 3es1_A Cupin 2, conserved barr 32.8 34 0.0012 20.0 2.5 31 55-85 84-114 (172)
115 2c9w_A Suppressor of cytokine 32.1 74 0.0025 18.2 4.7 39 30-73 13-52 (169)
116 1o5u_A Novel thermotoga mariti 32.0 57 0.002 16.9 3.9 31 53-85 34-64 (101)
117 2el8_A Signal-transducing adap 31.8 63 0.0021 17.3 4.1 37 32-72 19-56 (118)
118 1lr5_A Auxin binding protein 1 31.7 37 0.0013 19.0 2.5 33 55-87 46-78 (163)
119 3d0j_A Uncharacterized protein 31.6 38 0.0013 19.3 2.4 23 64-86 44-66 (140)
120 3jzv_A Uncharacterized protein 30.4 34 0.0012 19.6 2.2 30 56-85 59-88 (166)
121 4e2q_A Ureidoglycine aminohydr 30.4 31 0.0011 21.7 2.1 31 55-85 75-105 (266)
122 1sq4_A GLXB, glyoxylate-induce 30.3 57 0.002 20.3 3.3 34 52-85 193-227 (278)
123 1fi2_A Oxalate oxidase, germin 30.2 85 0.0029 18.3 4.7 35 54-88 76-111 (201)
124 3c3v_A Arachin ARAH3 isoform; 29.8 94 0.0032 21.5 4.5 38 53-90 51-88 (510)
125 3s7i_A Allergen ARA H 1, clone 29.5 60 0.0021 21.8 3.5 36 55-90 49-84 (418)
126 2qnk_A 3-hydroxyanthranilate 3 29.2 70 0.0024 20.5 3.5 31 54-85 211-241 (286)
127 3cjx_A Protein of unknown func 28.9 42 0.0014 19.4 2.4 32 52-83 45-76 (165)
128 3tkz_A Tyrosine-protein phosph 28.7 67 0.0023 16.7 5.7 52 31-86 4-59 (109)
129 2hmh_A Suppressor of cytokine 27.8 87 0.003 17.6 4.0 52 29-85 29-84 (152)
130 2d5f_A Glycinin A3B4 subunit; 27.5 1.2E+02 0.004 20.9 4.6 38 52-89 47-84 (493)
131 2bbu_A Suppressor of cytokine 27.5 93 0.0032 17.9 4.7 40 30-74 19-59 (164)
132 3i7d_A Sugar phosphate isomera 27.3 46 0.0016 18.8 2.4 31 55-85 48-80 (163)
133 2ysx_A Signaling inositol poly 27.1 77 0.0026 16.8 3.2 50 32-85 8-61 (119)
134 2kno_A Tensin-like C1 domain-c 27.1 83 0.0028 17.2 4.3 34 34-72 20-54 (131)
135 1wqu_A C-FES, proto-oncogene t 27.1 47 0.0016 17.6 2.2 48 31-85 13-63 (114)
136 2crh_A VAV proto-oncogene; onc 26.9 86 0.0029 17.3 3.8 49 32-85 24-76 (138)
137 3tvk_A DGC, diguanylate cyclas 26.8 88 0.003 18.0 3.6 35 42-79 57-91 (179)
138 3bu7_A Gentisate 1,2-dioxygena 26.5 39 0.0013 22.5 2.2 30 56-85 300-329 (394)
139 4i4a_A Similar to unknown prot 26.1 77 0.0026 16.5 3.1 30 56-85 40-69 (128)
140 3fz3_A Prunin; TREE NUT allerg 25.9 1.4E+02 0.0048 20.9 4.8 47 45-91 389-436 (531)
141 1o4t_A Putative oxalate decarb 25.8 84 0.0029 16.8 3.6 31 55-85 62-93 (133)
142 2oa2_A BH2720 protein; 1017534 25.7 89 0.003 17.0 3.9 31 56-86 49-80 (148)
143 2bnm_A Epoxidase; oxidoreducta 25.6 56 0.0019 18.7 2.6 17 69-85 139-155 (198)
144 1i3z_A EWS/FLI1 activated tran 25.5 76 0.0026 16.2 3.5 48 34-85 3-54 (103)
145 3vi8_A Peroxisome proliferator 25.4 1.3E+02 0.0043 18.7 4.7 26 26-51 91-116 (273)
146 2opk_A Hypothetical protein; p 25.2 64 0.0022 16.8 2.6 18 68-85 51-68 (112)
147 2vpv_A Protein MIF2, MIF2P; nu 25.0 54 0.0018 19.0 2.4 18 68-85 108-125 (166)
148 3ebr_A Uncharacterized RMLC-li 24.8 38 0.0013 19.4 1.7 32 52-83 44-75 (159)
149 2pyt_A Ethanolamine utilizatio 24.6 75 0.0026 17.3 2.9 29 55-85 62-90 (133)
150 1y9q_A Transcriptional regulat 24.6 1E+02 0.0036 17.5 3.8 16 70-85 126-141 (192)
151 3cew_A Uncharacterized cupin p 24.4 74 0.0025 16.6 2.8 31 55-85 31-63 (125)
152 2eo3_A CRK-like protein; phosp 24.2 86 0.003 16.4 3.2 49 33-86 18-70 (111)
153 1lkk_A Human P56 tyrosine kina 24.0 83 0.0028 16.1 3.8 35 32-69 2-37 (105)
154 2gsb_A RAS GTPase-activating p 23.7 93 0.0032 16.6 4.6 36 31-70 13-49 (119)
155 1ju5_A CRK; CRK, SH2, SH3, ada 23.2 90 0.0031 16.2 3.6 44 38-86 5-51 (109)
156 3aqe_A Receptor activity-modif 23.1 56 0.0019 17.2 2.0 25 13-37 62-86 (91)
157 1x82_A Glucose-6-phosphate iso 22.6 1E+02 0.0035 17.9 3.3 20 71-90 97-116 (190)
158 2cia_A Cytoplasmic protein NCK 22.2 92 0.0031 16.0 3.8 34 33-70 4-38 (102)
159 3n00_A REV-ERBA-alpha; reverba 22.1 1.4E+02 0.0048 18.1 4.1 26 27-52 81-106 (245)
160 3fcg_A F1 capsule-anchoring pr 21.5 46 0.0016 17.3 1.4 17 77-93 58-74 (90)
161 2pa7_A DTDP-6-deoxy-3,4-keto-h 21.3 76 0.0026 17.8 2.5 23 68-92 54-76 (141)
162 3gyt_A Nuclear hormone recepto 20.8 1.4E+02 0.0049 18.2 3.8 25 27-51 57-81 (244)
163 2eob_A 1-phosphatidylinositol- 20.7 1.1E+02 0.0038 16.4 4.1 52 31-86 16-70 (124)
164 3i5c_A Fusion of general contr 20.6 1.3E+02 0.0043 17.0 3.7 36 42-79 85-120 (206)
165 1sef_A Conserved hypothetical 20.4 1.1E+02 0.0039 18.7 3.3 31 55-85 187-218 (274)
166 2d0s_A Cytochrome C, cytochrom 20.0 85 0.0029 14.8 2.3 20 34-53 57-76 (79)
No 1
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.79 E-value=1.3e-18 Score=105.16 Aligned_cols=87 Identities=24% Similarity=0.558 Sum_probs=82.4
Q ss_pred cccchhHHHhhCcHHHHHHHHHHHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEE
Q 042824 3 SSYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLE 82 (94)
Q Consensus 3 ~~~~~~~~l~~lp~~l~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~ 82 (94)
++++++++++.+|+.||.++..+.+.++++++|+|.++++..+..++..++...|.+|++|+++|+.++.+|||.+|.|+
T Consensus 45 ~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~ 124 (198)
T 2ptm_A 45 KMFDERHIFREVSESIRQDVANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVD 124 (198)
T ss_dssp CCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEE
T ss_pred cCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchhcCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEE
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCC
Q 042824 83 EVGVGEDGS 91 (94)
Q Consensus 83 v~~~~~~g~ 91 (94)
++. ++|+
T Consensus 125 ~~~--~~g~ 131 (198)
T 2ptm_A 125 IIM--SDGV 131 (198)
T ss_dssp EEC--TTSC
T ss_pred EEe--cCCe
Confidence 996 4553
No 2
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.79 E-value=1.4e-18 Score=105.48 Aligned_cols=88 Identities=26% Similarity=0.550 Sum_probs=82.8
Q ss_pred cccchhHHHhhCcHHHHHHHHHHHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEE
Q 042824 3 SSYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLE 82 (94)
Q Consensus 3 ~~~~~~~~l~~lp~~l~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~ 82 (94)
++++++++++.+|+.||.++..+.+.+++.++|+|.++++..+..++..++...|.+|++|+++|+.++.+|||.+|.|+
T Consensus 46 ~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~ 125 (202)
T 3bpz_A 46 KMFDEDSILGELNGPLREKIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVS 125 (202)
T ss_dssp CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEE
T ss_pred cCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCchhcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCc
Q 042824 83 EVGVGEDGSE 92 (94)
Q Consensus 83 v~~~~~~g~e 92 (94)
++. ++|++
T Consensus 126 v~~--~~g~~ 133 (202)
T 3bpz_A 126 VLT--KGNKE 133 (202)
T ss_dssp EEC--TTSCC
T ss_pred EEE--CCCeE
Confidence 985 45553
No 3
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.72 E-value=9.9e-18 Score=102.24 Aligned_cols=83 Identities=27% Similarity=0.577 Sum_probs=78.4
Q ss_pred CcccchhHHHhhCcHHHHHHHHHHHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEE
Q 042824 2 ESSYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVL 81 (94)
Q Consensus 2 ~~~~~~~~~l~~lp~~l~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v 81 (94)
.++++++++++.+|+.||.++..+++..++ ++|+|.++++..+..++..++...|.+|++|+++|+.++.+|||.+|.|
T Consensus 49 ~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v 127 (212)
T 3ukn_A 49 NNGIDVSELLKDFPDELRADIAMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSM 127 (212)
T ss_dssp GGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-GSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCE
T ss_pred cCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-hcHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEE
Confidence 367889999999999999999999887766 7999999999999999999999999999999999999999999999999
Q ss_pred EEEe
Q 042824 82 EEVG 85 (94)
Q Consensus 82 ~v~~ 85 (94)
+++.
T Consensus 128 ~v~~ 131 (212)
T 3ukn_A 128 EVLK 131 (212)
T ss_dssp EEES
T ss_pred EEEE
Confidence 9986
No 4
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.70 E-value=6.3e-17 Score=94.31 Aligned_cols=79 Identities=27% Similarity=0.417 Sum_probs=67.7
Q ss_pred hhHHHhhCcHHHHHHHHHHHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824 7 EASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 7 ~~~~l~~lp~~l~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~ 85 (94)
.+++++.+|+.+|.++.++.+.++++++|+|.++++..+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++.
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~ 83 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ 83 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEE
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999999999986
No 5
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.49 E-value=3.9e-14 Score=81.00 Aligned_cols=73 Identities=19% Similarity=0.235 Sum_probs=67.8
Q ss_pred hCcHHHHHHHHHHHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824 13 DIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 13 ~lp~~l~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~ 85 (94)
.+|..+|..........+|+++|+|.++++..+..++..++.+.|.+|++|+++|+.++.+|+|.+|.++++.
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~ 79 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK 79 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE
Confidence 5677777777777788999999999999999999999999999999999999999999999999999999965
No 6
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.49 E-value=3.6e-14 Score=80.98 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=56.6
Q ss_pred HHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824 28 MPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE 93 (94)
Q Consensus 28 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~ 93 (94)
.++|+++|+|.++++..+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++..+++|++.
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~ 70 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSA 70 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC-------
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCce
Confidence 457889999999999999999999999999999999999999999999999999999888888664
No 7
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.48 E-value=2.6e-13 Score=78.33 Aligned_cols=67 Identities=15% Similarity=0.292 Sum_probs=58.7
Q ss_pred hHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824 27 YMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE 93 (94)
Q Consensus 27 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~ 93 (94)
..++++.+|+|..+++..+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++..+++|++.
T Consensus 10 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~ 76 (154)
T 2z69_A 10 HQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEK 76 (154)
T ss_dssp HHHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----
T ss_pred HHHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEE
Confidence 3467889999999999999999999999999999999999999999999999999999887788764
No 8
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.47 E-value=1.6e-13 Score=78.77 Aligned_cols=66 Identities=21% Similarity=0.366 Sum_probs=61.7
Q ss_pred HHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824 28 MPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE 93 (94)
Q Consensus 28 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~ 93 (94)
.++++.+|+|..+++..+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++..+++|++.
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~ 69 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGREN 69 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEE
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEE
Confidence 457889999999999999999999999999999999999999999999999999999988888764
No 9
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.47 E-value=5e-14 Score=82.39 Aligned_cols=71 Identities=21% Similarity=0.349 Sum_probs=63.7
Q ss_pred HHHHHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824 22 ISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE 93 (94)
Q Consensus 22 ~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~ 93 (94)
..+....++|+++|+|.++++..+..++..++.+.|.+|++|+++|+.++.+|+|.+|.++++. +.+|++.
T Consensus 31 ~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~~~g~~~ 101 (161)
T 3idb_B 31 DQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGR 101 (161)
T ss_dssp HHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEE-EETTEEE
T ss_pred HHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEE-cCCCCeE
Confidence 3445567789999999999999999999999999999999999999999999999999999998 6677653
No 10
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.47 E-value=2.2e-13 Score=81.71 Aligned_cols=70 Identities=13% Similarity=0.142 Sum_probs=64.4
Q ss_pred HHHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824 24 QTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE 93 (94)
Q Consensus 24 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~ 93 (94)
.....++++++|+|.++++..+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++..+++|++.
T Consensus 34 ~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~v~~~~~~g~~~ 103 (187)
T 3gyd_A 34 FEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQ 103 (187)
T ss_dssp HHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEEETTTEEE
T ss_pred HHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCeE
Confidence 3445678999999999999999999999999999999999999999999999999999999988888763
No 11
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.46 E-value=1.5e-13 Score=82.37 Aligned_cols=66 Identities=20% Similarity=0.273 Sum_probs=62.1
Q ss_pred HHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824 28 MPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE 93 (94)
Q Consensus 28 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~ 93 (94)
..+++.+|+|.++++..+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++..+++|++.
T Consensus 6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~ 71 (194)
T 3dn7_A 6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQ 71 (194)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEE
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEE
Confidence 456788999999999999999999999999999999999999999999999999999988899875
No 12
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.44 E-value=1.7e-13 Score=83.31 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=60.5
Q ss_pred HHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824 29 PYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE 93 (94)
Q Consensus 29 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~ 93 (94)
++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++..+++|++.
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~ 67 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREI 67 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEE
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEE
Confidence 46889999999999999999999999999999999999999999999999999999988888864
No 13
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.44 E-value=2.2e-13 Score=77.52 Aligned_cols=64 Identities=23% Similarity=0.508 Sum_probs=58.6
Q ss_pred HHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824 29 PYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE 93 (94)
Q Consensus 29 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~ 93 (94)
++|+++|+|..+++..+..++..++.+.|++|++|+++|+.++.+|+|.+|.+++. .+++|+++
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~-~~~~g~~~ 69 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESV-TTDGGRSG 69 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEE-CCSSCSSS
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-EcCCCcce
Confidence 46788999999999999999999999999999999999999999999999999966 56677764
No 14
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.43 E-value=3.2e-13 Score=81.94 Aligned_cols=63 Identities=22% Similarity=0.425 Sum_probs=57.7
Q ss_pred hhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824 31 IEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE 93 (94)
Q Consensus 31 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~ 93 (94)
|+++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++..+++|++.
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~ 63 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQER 63 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEE
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEE
Confidence 467999999999999999999999999999999999999999999999999999988888764
No 15
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.42 E-value=2.7e-13 Score=83.46 Aligned_cols=67 Identities=13% Similarity=0.193 Sum_probs=63.3
Q ss_pred hHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824 27 YMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE 93 (94)
Q Consensus 27 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~ 93 (94)
..++|+++|+|.++++..+..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++..+++|++.
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~ 75 (237)
T 3fx3_A 9 QKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEA 75 (237)
T ss_dssp HHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEE
T ss_pred HHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEE
Confidence 4578899999999999999999999999999999999999999999999999999999988888864
No 16
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.41 E-value=3.3e-13 Score=82.80 Aligned_cols=66 Identities=23% Similarity=0.396 Sum_probs=60.6
Q ss_pred HHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824 28 MPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE 93 (94)
Q Consensus 28 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~ 93 (94)
.++|+++|+|.++++..+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++..+++|++.
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~ 70 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRER 70 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEE
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceE
Confidence 467889999999999999999999999999999999999999999999999999999988888764
No 17
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.41 E-value=1e-13 Score=78.85 Aligned_cols=65 Identities=18% Similarity=0.394 Sum_probs=58.9
Q ss_pred HhHHHhhcCcCCCCCCHHHHHHHHhhcccceec-cCCeEEecCCccCeEEEEeccEEEEEeeCCCCCc
Q 042824 26 LYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFL-PGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSE 92 (94)
Q Consensus 26 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~-~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e 92 (94)
....+|+++++|..+++..+..++..++.+.|. +|++|+++|+.++.+|||.+|.++++. .+|++
T Consensus 13 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~~g~~ 78 (134)
T 2d93_A 13 QLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH--PDGKV 78 (134)
T ss_dssp HHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC--SSSCE
T ss_pred HHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc--CCCcE
Confidence 345678899999999999999999999999999 999999999999999999999999996 45543
No 18
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.41 E-value=3.7e-13 Score=82.22 Aligned_cols=67 Identities=15% Similarity=0.292 Sum_probs=62.7
Q ss_pred hHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824 27 YMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE 93 (94)
Q Consensus 27 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~ 93 (94)
..++|+++|+|.++++..+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++..+++|++.
T Consensus 7 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~ 73 (227)
T 3dkw_A 7 HQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEK 73 (227)
T ss_dssp SHHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCB
T ss_pred HHHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEE
Confidence 3567899999999999999999999999999999999999999999999999999999988888765
No 19
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.39 E-value=4.6e-13 Score=81.94 Aligned_cols=66 Identities=21% Similarity=0.402 Sum_probs=62.0
Q ss_pred HHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824 28 MPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE 93 (94)
Q Consensus 28 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~ 93 (94)
.++++++|+|.++++..+..++..++.+.|++|++|+++|+.++.+|||.+|.++++..+++|++.
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~ 70 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGREN 70 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEE
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEE
Confidence 456889999999999999999999999999999999999999999999999999999988888764
No 20
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.38 E-value=9e-13 Score=80.62 Aligned_cols=66 Identities=14% Similarity=0.245 Sum_probs=52.0
Q ss_pred HHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824 28 MPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE 93 (94)
Q Consensus 28 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~ 93 (94)
...+++.++|.+++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++..+++|+++
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~ 75 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDREL 75 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEE
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEE
Confidence 456788999999999999999999999999999999999999999999999999999988888874
No 21
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.38 E-value=1.1e-12 Score=80.69 Aligned_cols=66 Identities=26% Similarity=0.374 Sum_probs=61.5
Q ss_pred HHHhhcCcCCCCCCHHHHHHHHhh--cccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824 28 MPYIEKVSLFKGCSSEFINQIVTR--LHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE 93 (94)
Q Consensus 28 ~~~l~~~~~f~~l~~~~~~~l~~~--~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~ 93 (94)
..++.++|+|..++++.+..++.. ++.+.|++|++|+++|+.++.+|+|.+|.++++..+++|++.
T Consensus 17 ~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~ 84 (232)
T 1zyb_A 17 FDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYT 84 (232)
T ss_dssp HTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCE
T ss_pred HHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEE
Confidence 456889999999999999999998 999999999999999999999999999999999888888764
No 22
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.36 E-value=2.5e-12 Score=82.74 Aligned_cols=66 Identities=21% Similarity=0.421 Sum_probs=61.9
Q ss_pred hHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCc
Q 042824 27 YMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSE 92 (94)
Q Consensus 27 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e 92 (94)
..++|+++|+|..+++..+..++..++.+.|++|++|+++|+.++.+|||.+|.++++..+.+|++
T Consensus 11 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~ 76 (333)
T 4ava_A 11 RVEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA 76 (333)
T ss_dssp CHHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE
T ss_pred hHHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE
Confidence 456789999999999999999999999999999999999999999999999999999998888764
No 23
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.34 E-value=1.4e-12 Score=82.85 Aligned_cols=73 Identities=18% Similarity=0.190 Sum_probs=68.6
Q ss_pred hCcHHHHHHHHHHHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824 13 DIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 13 ~lp~~l~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~ 85 (94)
.+|...|.+........+++++++|..+++..+..++..++...|++|++|+++|+.++.+|+|.+|.++++.
T Consensus 23 ~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~ 95 (299)
T 3shr_A 23 AFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK 95 (299)
T ss_dssp CCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE
T ss_pred CCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE
Confidence 5788888888888888999999999999999999999999999999999999999999999999999999975
No 24
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.33 E-value=6.8e-12 Score=72.79 Aligned_cols=61 Identities=23% Similarity=0.353 Sum_probs=57.4
Q ss_pred HHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824 25 TLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 25 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~ 85 (94)
....++|+++|+|.++++..+..++..++.+.|.+|++|+++|+.++.+|||.+|.++++.
T Consensus 34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~ 94 (154)
T 3pna_A 34 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV 94 (154)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE
T ss_pred HHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE
Confidence 3456788999999999999999999999999999999999999999999999999999986
No 25
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.33 E-value=5.1e-12 Score=71.78 Aligned_cols=60 Identities=23% Similarity=0.370 Sum_probs=56.5
Q ss_pred hHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEee
Q 042824 27 YMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGV 86 (94)
Q Consensus 27 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~ 86 (94)
..++++++|+|.++++..+..++..++.+.|++|++|+++|+..+.+|+|.+|.++++..
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~ 68 (138)
T 1vp6_A 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP 68 (138)
T ss_dssp HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSS
T ss_pred HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeC
Confidence 456789999999999999999999999999999999999999999999999999999863
No 26
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.31 E-value=4.2e-12 Score=84.95 Aligned_cols=78 Identities=17% Similarity=0.156 Sum_probs=70.8
Q ss_pred CcHHHHHHHHHHHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCC
Q 042824 14 IPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGS 91 (94)
Q Consensus 14 lp~~l~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~ 91 (94)
.|+..|...........|+++++|.++++..+..++..++...|++|++|+++|+.++.+|+|.+|.++++..+.+|+
T Consensus 27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~ 104 (469)
T 1o7f_A 27 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSH 104 (469)
T ss_dssp SCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCG
T ss_pred CChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCC
Confidence 456667766677778899999999999999999999999999999999999999999999999999999999888875
No 27
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.28 E-value=4e-12 Score=77.96 Aligned_cols=61 Identities=10% Similarity=0.180 Sum_probs=53.6
Q ss_pred cCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824 33 KVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE 93 (94)
Q Consensus 33 ~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~ 93 (94)
.+|+|..++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++..+++|++.
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~ 74 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFH 74 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCC
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEE
Confidence 5799999999999999999999999999999999999999999999999999988888765
No 28
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.27 E-value=5.9e-12 Score=83.82 Aligned_cols=70 Identities=21% Similarity=0.352 Sum_probs=63.0
Q ss_pred HHHHHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCc
Q 042824 22 ISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSE 92 (94)
Q Consensus 22 ~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e 92 (94)
-......++|+++++|.++++..+..++..++...|.+|++|+++|+.++.+|+|.+|.++++. +.+|++
T Consensus 138 ~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~-~~~G~~ 207 (416)
T 3tnp_B 138 DQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVG 207 (416)
T ss_dssp HHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEE-ECSSCE
T ss_pred HHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEE-ecCCCE
Confidence 3344567789999999999999999999999999999999999999999999999999999998 566665
No 29
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.24 E-value=3.1e-11 Score=74.25 Aligned_cols=59 Identities=24% Similarity=0.283 Sum_probs=56.2
Q ss_pred hHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824 27 YMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 27 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~ 85 (94)
..++|+++|+|.++++..+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++.
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~ 63 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV 63 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999986
No 30
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.21 E-value=2.6e-11 Score=73.13 Aligned_cols=59 Identities=19% Similarity=0.322 Sum_probs=51.7
Q ss_pred cCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824 35 SLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE 93 (94)
Q Consensus 35 ~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~ 93 (94)
++++.++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++..+++|++.
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~ 60 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEM 60 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEE
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEE
Confidence 56778999999999999999999999999999999999999999999999988888864
No 31
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.20 E-value=2.2e-12 Score=78.66 Aligned_cols=64 Identities=11% Similarity=0.179 Sum_probs=59.0
Q ss_pred HHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824 29 PYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE 93 (94)
Q Consensus 29 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~ 93 (94)
.+|+++|+|..+++..+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++ .+++|++.
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~ 67 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVY-LAYEDKEF 67 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEE-EECSSCEE
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEE
Confidence 46788999999999999999999999999999999999999999999999999996 66788764
No 32
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.19 E-value=1.3e-12 Score=79.83 Aligned_cols=63 Identities=10% Similarity=0.077 Sum_probs=57.5
Q ss_pred HhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824 30 YIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE 93 (94)
Q Consensus 30 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~ 93 (94)
+|+++|+|..+++..+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++ .+++|++.
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~ 63 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVY-LVGEEREI 63 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEE-EEETTEEE
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEE
Confidence 3678999999999999999999999999999999999999999999999999997 66778764
No 33
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.18 E-value=4.2e-11 Score=75.97 Aligned_cols=68 Identities=22% Similarity=0.447 Sum_probs=61.7
Q ss_pred HHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeC-CCCCc
Q 042824 25 TLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVG-EDGSE 92 (94)
Q Consensus 25 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~-~~g~e 92 (94)
.....++..+|+|..+++..+..++..++...|.+|++|+++|+.++.+|+|.+|.++++..+ .+|++
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~ 221 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDP 221 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCC
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcc
Confidence 345678889999999999999999999999999999999999999999999999999999876 46654
No 34
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.16 E-value=1.3e-10 Score=84.03 Aligned_cols=71 Identities=18% Similarity=0.215 Sum_probs=62.0
Q ss_pred HHHHHHHHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCC
Q 042824 19 RAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGED 89 (94)
Q Consensus 19 ~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~ 89 (94)
|..--.+.....|+++++|.++++..+..|+..+....|++|++||++||.++.+|+|.+|.|.|+..+++
T Consensus 32 Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~ 102 (999)
T 4f7z_A 32 RSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETS 102 (999)
T ss_dssp CCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSS
T ss_pred CCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCC
Confidence 33333445567789999999999999999999999999999999999999999999999999999975444
No 35
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.14 E-value=6.6e-11 Score=74.66 Aligned_cols=62 Identities=23% Similarity=0.342 Sum_probs=58.1
Q ss_pred HHHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824 24 QTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 24 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~ 85 (94)
.....++|+++|+|..+++..+..++..++...|++|++|+++|+.++.+|+|.+|.++++.
T Consensus 34 ~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~ 95 (291)
T 2qcs_B 34 MAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV 95 (291)
T ss_dssp HHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE
T ss_pred HHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE
Confidence 44567789999999999999999999999999999999999999999999999999999987
No 36
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.12 E-value=7.7e-11 Score=77.58 Aligned_cols=63 Identities=24% Similarity=0.304 Sum_probs=58.7
Q ss_pred HHHHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824 23 SQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 23 ~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~ 85 (94)
.+....++|+++++|.++++..+..++..++.+.|.+|++|+++|+.++.+|+|.+|.++++.
T Consensus 124 ~~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~ 186 (381)
T 4din_B 124 TMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV 186 (381)
T ss_dssp HHHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE
T ss_pred HHHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE
Confidence 344567789999999999999999999999999999999999999999999999999999996
No 37
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.12 E-value=6.3e-10 Score=70.15 Aligned_cols=66 Identities=18% Similarity=0.295 Sum_probs=59.9
Q ss_pred HHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCC
Q 042824 25 TLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDG 90 (94)
Q Consensus 25 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g 90 (94)
.....++..+++|..++...+..++..++...|.+|++|+++|+.++.+|+|.+|.++++....+|
T Consensus 153 ~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~ 218 (291)
T 2qcs_B 153 KMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSEN 218 (291)
T ss_dssp HHHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTT
T ss_pred HHHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCC
Confidence 344567888999999999999999999999999999999999999999999999999999866555
No 38
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.12 E-value=3.5e-10 Score=69.52 Aligned_cols=62 Identities=18% Similarity=0.439 Sum_probs=57.3
Q ss_pred HhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeC
Q 042824 26 LYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVG 87 (94)
Q Consensus 26 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~ 87 (94)
....+++.+|+|..+++..+..++..++.+.|.+|++|+++|+.++.+|+|.+|.++++..+
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~ 183 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKG 183 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETT
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcC
Confidence 34567889999999999999999999999999999999999999999999999999998743
No 39
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.11 E-value=2.3e-10 Score=68.79 Aligned_cols=54 Identities=17% Similarity=0.391 Sum_probs=50.5
Q ss_pred CCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824 40 CSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE 93 (94)
Q Consensus 40 l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~ 93 (94)
++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.++++..+++|++.
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~ 54 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREM 54 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEE
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEE
Confidence 578899999999999999999999999999999999999999999988888764
No 40
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.10 E-value=2e-10 Score=75.58 Aligned_cols=67 Identities=21% Similarity=0.303 Sum_probs=60.9
Q ss_pred HHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCC
Q 042824 25 TLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGS 91 (94)
Q Consensus 25 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~ 91 (94)
..+..++.++++|..+++..+..++..++...|.+|++|+++|+.++.+|||.+|.++++..+.+|+
T Consensus 244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~ 310 (381)
T 4din_B 244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNE 310 (381)
T ss_dssp HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSS
T ss_pred HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCC
Confidence 3455678899999999999999999999999999999999999999999999999999998766554
No 41
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.03 E-value=3.9e-10 Score=70.54 Aligned_cols=57 Identities=18% Similarity=0.316 Sum_probs=49.7
Q ss_pred CCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824 37 FKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE 93 (94)
Q Consensus 37 f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~ 93 (94)
...+++..+..++..++.+.|++|++|+++|+.++.+|||.+|.++++..+++|++.
T Consensus 54 ~~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~ 110 (260)
T 3kcc_A 54 GKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEM 110 (260)
T ss_dssp -----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEE
T ss_pred cCCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEE
Confidence 356899999999999999999999999999999999999999999999988888864
No 42
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.03 E-value=1e-10 Score=72.57 Aligned_cols=63 Identities=17% Similarity=0.152 Sum_probs=56.9
Q ss_pred hhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824 31 IEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE 93 (94)
Q Consensus 31 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~ 93 (94)
+.....+..+++..+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++..+++|++.
T Consensus 11 ~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~ 73 (250)
T 3e6c_C 11 CGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEK 73 (250)
T ss_dssp CCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEE
T ss_pred hhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEE
Confidence 444444588999999999999999999999999999999999999999999999988898874
No 43
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.02 E-value=1.1e-10 Score=70.93 Aligned_cols=61 Identities=15% Similarity=0.248 Sum_probs=48.6
Q ss_pred cCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824 33 KVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE 93 (94)
Q Consensus 33 ~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~ 93 (94)
+-|.|...++..+..+...++.+.|++|++|+++|+.++.+|+|.+|.++++..+++|++.
T Consensus 3 ~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~ 63 (213)
T 1o5l_A 3 SDKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTL 63 (213)
T ss_dssp ----------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEE
T ss_pred ccccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEE
Confidence 4578888899999999999999999999999999999999999999999999988888864
No 44
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.01 E-value=7.1e-10 Score=73.82 Aligned_cols=63 Identities=21% Similarity=0.368 Sum_probs=56.5
Q ss_pred hHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCC
Q 042824 27 YMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGED 89 (94)
Q Consensus 27 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~ 89 (94)
+..++..+++|..++...+..++..++...|.+|++|+++|+.++.+|||.+|.++++..+.+
T Consensus 265 ~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~ 327 (416)
T 3tnp_B 265 YESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKG 327 (416)
T ss_dssp SSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC---
T ss_pred HHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCC
Confidence 345788899999999999999999999999999999999999999999999999999986554
No 45
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=98.99 E-value=7.8e-10 Score=73.95 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=55.7
Q ss_pred HhHHHhhcCcCCCCCCHHHHHHHHhhccc-ceeccCCeEEecCCccCeEEEEeccEEEEEee
Q 042824 26 LYMPYIEKVSLFKGCSSEFINQIVTRLHE-EFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGV 86 (94)
Q Consensus 26 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~-~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~ 86 (94)
...+++..+|+|..+++..+..++..+.. ..|++|++|+++|+.++.+|||.+|.++++..
T Consensus 334 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~ 395 (469)
T 1o7f_A 334 IIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY 395 (469)
T ss_dssp HHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEET
T ss_pred HHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEc
Confidence 34577889999999999999999999985 48999999999999999999999999999873
No 46
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=98.99 E-value=9.8e-10 Score=67.71 Aligned_cols=56 Identities=16% Similarity=0.282 Sum_probs=49.2
Q ss_pred CCCCHHHHHHHHh--hcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824 38 KGCSSEFINQIVT--RLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE 93 (94)
Q Consensus 38 ~~l~~~~~~~l~~--~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~ 93 (94)
++++++.+..++. .++.+.|++|++|+++|+.++.+|||.+|.|+++..+++|++.
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~ 59 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIM 59 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEE
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEE
Confidence 3577888888874 5889999999999999999999999999999999988898875
No 47
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=98.95 E-value=1.5e-09 Score=76.45 Aligned_cols=72 Identities=17% Similarity=0.192 Sum_probs=62.0
Q ss_pred cHHHHHHHHHHHhHHHhhcCcCCCCCCHHHHHHHHhhcc-cceeccCCeEEecCCccCeEEEEeccEEEEEee
Q 042824 15 PVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLH-EEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGV 86 (94)
Q Consensus 15 p~~l~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~-~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~ 86 (94)
|+..|....+....+++..+++|.++++..+..++..+. .+.|++|++|+++|+.++.+|+|.+|.|+++..
T Consensus 18 ~p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~ 90 (694)
T 3cf6_E 18 PPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY 90 (694)
T ss_dssp CGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred ChhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe
Confidence 334455444455567889999999999999999999997 689999999999999999999999999999974
No 48
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=98.81 E-value=7.6e-09 Score=63.95 Aligned_cols=52 Identities=25% Similarity=0.379 Sum_probs=47.5
Q ss_pred HHHHHHHHhhcc---cceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824 42 SEFINQIVTRLH---EEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE 93 (94)
Q Consensus 42 ~~~~~~l~~~~~---~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~ 93 (94)
++.++.++.... .+.|++|++|+++|+.++.+|+|.+|.++++..+++|++.
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~ 84 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEI 84 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEE
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEE
Confidence 667888888888 8999999999999999999999999999999988888864
No 49
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=98.77 E-value=7.6e-10 Score=72.11 Aligned_cols=59 Identities=24% Similarity=0.384 Sum_probs=1.0
Q ss_pred HHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEee
Q 042824 28 MPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGV 86 (94)
Q Consensus 28 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~ 86 (94)
.+.++++|+|.+++++.++.++..++.+.+++|+.|+++|+.++.+|+|.+|.++++..
T Consensus 227 ~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~ 285 (355)
T 3beh_A 227 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP 285 (355)
T ss_dssp HC---------------------------------------------------------
T ss_pred chhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEEC
Confidence 45788999999999999999999999999999999999999999999999999999864
No 50
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=98.67 E-value=6.9e-08 Score=70.03 Aligned_cols=60 Identities=17% Similarity=0.197 Sum_probs=54.0
Q ss_pred HhHHHhhcCcCCCCCCHHHHHHHHhhcccc-eeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824 26 LYMPYIEKVSLFKGCSSEFINQIVTRLHEE-FFLPGEVIMEQGNVVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 26 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~-~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~ 85 (94)
...+++..+|.|..++......++..+... ++.+|++|+++||.++.+|||.+|.|.|+.
T Consensus 334 ~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~ 394 (999)
T 4f7z_A 334 IIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI 394 (999)
T ss_dssp HHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEE
T ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEE
Confidence 345678899999999999999999998864 567899999999999999999999999986
No 51
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=98.65 E-value=2.2e-08 Score=60.16 Aligned_cols=45 Identities=27% Similarity=0.337 Sum_probs=38.5
Q ss_pred HhhcccceeccCCeEEecCCcc--CeEEEEeccEEEEEeeCCCCCcC
Q 042824 49 VTRLHEEFFLPGEVIMEQGNVV--DQLYFVCHGVLEEVGVGEDGSEE 93 (94)
Q Consensus 49 ~~~~~~~~~~~ge~i~~~g~~~--~~~y~i~~G~v~v~~~~~~g~e~ 93 (94)
.+.++.+.|++|++|+++|+.+ +.+|+|.+|.++++..+++|++.
T Consensus 2 ~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~ 48 (202)
T 2zcw_A 2 TQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNAL 48 (202)
T ss_dssp ----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEE
T ss_pred CccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEE
Confidence 4567889999999999999999 99999999999999988888864
No 52
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=98.55 E-value=8.2e-08 Score=57.35 Aligned_cols=39 Identities=26% Similarity=0.300 Sum_probs=36.0
Q ss_pred ceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824 55 EFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE 93 (94)
Q Consensus 55 ~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~ 93 (94)
+.|++|++|+++|+.++.+|+|.+|.++++..+++|++.
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~ 40 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLI 40 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEE
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEE
Confidence 578999999999999999999999999999988888764
No 53
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}
Probab=90.51 E-value=1.6 Score=25.95 Aligned_cols=52 Identities=15% Similarity=0.223 Sum_probs=36.8
Q ss_pred cCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEe---ccEEEEEeeCCCC
Q 042824 33 KVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVC---HGVLEEVGVGEDG 90 (94)
Q Consensus 33 ~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~---~G~v~v~~~~~~g 90 (94)
..|+|.+++..+.+.++.. ..|++|+|+...++++-+.. .|.+.-....+.|
T Consensus 13 ~HP~F~n~s~~qAe~~L~~------~~G~~liRPSsk~~~ltit~Kv~d~~~~Hi~I~E~~ 67 (178)
T 2xp1_A 13 KHPLFKNFNVTESENYLRS------STDDFLIRKGSRHGYCVLVIKFASDVFVHMKIEEHS 67 (178)
T ss_dssp GSTTEECCCHHHHHHHHHH------SSCCEEEEECSSTTEEEEEEEEETTEEEEEEEEECS
T ss_pred cCCCcCCCCHHHHHHHHhc------CCCCEEEeecCCCCcEEEEEEECCCcEEEEEEEECC
Confidence 5899999999888887776 24999999999877654443 4554444333333
No 54
>3or8_A Transcription elongation factor SPT6; SH2, CTD binding; HET: MES; 1.60A {Candida glabrata} PDB: 3pjp_A* 3psj_A* 3psk_A 2l3t_A 3gxw_A 3gxx_A
Probab=80.58 E-value=5.9 Score=23.91 Aligned_cols=47 Identities=11% Similarity=0.199 Sum_probs=33.9
Q ss_pred cCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccC-eE---EEEeccEEEEE
Q 042824 33 KVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVD-QL---YFVCHGVLEEV 84 (94)
Q Consensus 33 ~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~-~~---y~i~~G~v~v~ 84 (94)
..|.|.+++-......++.. ..||+|+|+...+. ++ +=+..|...-+
T Consensus 7 ~HP~F~n~~~~qAe~~L~~~-----~~Ge~iIRPSSkg~dhLtvTwKv~d~v~qHi 57 (197)
T 3or8_A 7 NHPYYFPFNGKQAEDYLRSK-----ERGDFVIRQSSRGDDHLAITWKLDKDLFQHV 57 (197)
T ss_dssp CCTTEECCCHHHHHHHHTTS-----CTTCEEEEECSSCTTEEEEEEEEETTEEEEE
T ss_pred CCCCcCCCCHHHHHHHHhcC-----CCCCEEEeeCCCCCCcEEEEEEECCCcEEEE
Confidence 58999999998888877652 68999999999864 32 33445654433
No 55
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=73.45 E-value=8.8 Score=23.12 Aligned_cols=34 Identities=15% Similarity=0.105 Sum_probs=29.1
Q ss_pred cccceeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824 52 LHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 52 ~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~ 85 (94)
+....+.+|+.+=..-.+.+.+++|++|.+.+..
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i 72 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFI 72 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEE
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEE
Confidence 3456789999988887888999999999999986
No 56
>3tbi_A RNA polymerase-associated protein GP33; transcription accessory protein, transcription; 3.00A {Enterobacteria phage T4}
Probab=68.97 E-value=4 Score=22.39 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=22.5
Q ss_pred CcccchhHHHhhCcHHHHHHHHHHHh
Q 042824 2 ESSYTEASVLHDIPVSIRAKISQTLY 27 (94)
Q Consensus 2 ~~~~~~~~~l~~lp~~l~~~~~~~~~ 27 (94)
+++++++.+-+.+|++|+.++..+..
T Consensus 68 EnsIe~~~~~K~Ip~~IiEKIk~EAI 93 (115)
T 3tbi_A 68 ENSIPETQFAKFIPSGIIEKIQSEAI 93 (115)
T ss_dssp HHTCCGGGHHHHSCHHHHHHHHHHHH
T ss_pred HcCCCHHHhhHhcCHHHHHHHHHHHH
Confidence 47899999999999999999887653
No 57
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=68.34 E-value=10 Score=20.11 Aligned_cols=32 Identities=9% Similarity=-0.045 Sum_probs=24.4
Q ss_pred cceeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824 54 EEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 54 ~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~ 85 (94)
...+++|..+-..-.....++++++|.+.+..
T Consensus 40 ~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i 71 (114)
T 3fjs_A 40 RMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV 71 (114)
T ss_dssp EEEECTTCEEEEECCSSCEEEEEEESCEEEEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEECEEEEEE
Confidence 34567777766655566789999999999876
No 58
>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide binding protein; HET: PTR; 1.80A {Mus musculus} SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A*
Probab=61.54 E-value=15 Score=19.06 Aligned_cols=50 Identities=14% Similarity=0.100 Sum_probs=33.2
Q ss_pred hhcCcCCC-CCCHHHHHHHHhhcccceeccCCeEEecCCccCe---EEEEeccEEEEEe
Q 042824 31 IEKVSLFK-GCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQ---LYFVCHGVLEEVG 85 (94)
Q Consensus 31 l~~~~~f~-~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~---~y~i~~G~v~v~~ 85 (94)
|...|+|- .++....+.++... +.|.+++|..+...+ +-+...|.+.=+.
T Consensus 6 l~~~~Wyhg~isR~~Ae~lL~~~-----~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~ 59 (100)
T 1r1p_A 6 IEFPEWFHEGLSRHQAENLLMGK-----DIGFFIIRASQSSPGDFSISVRHEDDVQHFK 59 (100)
T ss_dssp CTTTTTSCTTCCHHHHHHHHHTS-----CTTBEEEEECSSSTTCEEEEEECSSSEEEEE
T ss_pred eccCCccccCCCHHHHHHHhcCC-----CCCEEEEEecCCCCCCEEEEEEECCEEEEEE
Confidence 56678777 68888888877642 689999998865332 3333455555543
No 59
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=60.97 E-value=8.8 Score=22.28 Aligned_cols=37 Identities=24% Similarity=0.187 Sum_probs=25.7
Q ss_pred ccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCC
Q 042824 53 HEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGED 89 (94)
Q Consensus 53 ~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~ 89 (94)
....+.||.........++.+++|++|++.+...+++
T Consensus 44 ~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~ 80 (178)
T 1dgw_A 44 LEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPD 80 (178)
T ss_dssp EEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETT
T ss_pred EEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCC
Confidence 3456788876544433457899999999988765444
No 60
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=57.37 E-value=18 Score=23.16 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=25.6
Q ss_pred ceeccCCeEEecCCc-cCeEEEEeccEEEEEeeCCCC
Q 042824 55 EFFLPGEVIMEQGNV-VDQLYFVCHGVLEEVGVGEDG 90 (94)
Q Consensus 55 ~~~~~ge~i~~~g~~-~~~~y~i~~G~v~v~~~~~~g 90 (94)
..+.+|...-..-.. ...+++|++|++.+...+++|
T Consensus 57 ~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g 93 (361)
T 2vqa_A 57 MSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEG 93 (361)
T ss_dssp EEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTS
T ss_pred EEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCC
Confidence 456677754333233 789999999999999876666
No 61
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=57.28 E-value=19 Score=23.39 Aligned_cols=37 Identities=16% Similarity=0.127 Sum_probs=26.4
Q ss_pred ceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCC
Q 042824 55 EFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGS 91 (94)
Q Consensus 55 ~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~ 91 (94)
..+.+|..+-..-.....+.+|++|++.+...+.+|+
T Consensus 84 ~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~ 120 (385)
T 1j58_A 84 MRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGR 120 (385)
T ss_dssp EEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSC
T ss_pred EEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCc
Confidence 4567777554333336789999999999988766665
No 62
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=56.99 E-value=12 Score=19.44 Aligned_cols=29 Identities=28% Similarity=0.356 Sum_probs=20.0
Q ss_pred eccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824 57 FLPGEVIMEQGNVVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 57 ~~~ge~i~~~g~~~~~~y~i~~G~v~v~~ 85 (94)
+.+|..+-........+++|++|.+.+..
T Consensus 45 ~~~g~~~~~H~h~~~e~~~vl~G~~~~~i 73 (114)
T 2ozj_A 45 FADGESVSEEEYFGDTLYLILQGEAVITF 73 (114)
T ss_dssp EETTSSCCCBCCSSCEEEEEEEEEEEEEE
T ss_pred ECCCCccccEECCCCeEEEEEeCEEEEEE
Confidence 45555443344456779999999998875
No 63
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*
Probab=56.08 E-value=9.8 Score=25.39 Aligned_cols=40 Identities=25% Similarity=0.138 Sum_probs=30.3
Q ss_pred cccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCC
Q 042824 52 LHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGS 91 (94)
Q Consensus 52 ~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~ 91 (94)
+....+.||.++...-..++.+++|++|++.+...+++++
T Consensus 54 ~~~~~l~pgg~~~ph~~~a~ei~yVl~G~~~v~~v~~~~~ 93 (397)
T 2phl_A 54 LVEFRSKPETLLLPQQADAELLLVVRSGSAILVLVKPDDR 93 (397)
T ss_dssp EEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEEETTTE
T ss_pred EEEEEECCCcCccCEecCCCeEEEEEeeeEEEEEEeCCCc
Confidence 3446778888766555567889999999999988766654
No 64
>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain, signaling protein, structural genomics, joint CE structural genomics, JCSG; 1.50A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jwo_A
Probab=55.12 E-value=20 Score=18.37 Aligned_cols=50 Identities=10% Similarity=-0.010 Sum_probs=31.8
Q ss_pred hhcCcCCC-CCCHHHHHHHHhhcccceeccCCeEEecCCccCe---EEEEeccEEEEEe
Q 042824 31 IEKVSLFK-GCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQ---LYFVCHGVLEEVG 85 (94)
Q Consensus 31 l~~~~~f~-~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~---~y~i~~G~v~v~~ 85 (94)
|...|+|- .++....+.++.. -..|.+++|..+...+ +-+...|.+.=+.
T Consensus 2 L~~~~Wyhg~isr~~Ae~lL~~-----~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~ 55 (98)
T 3us4_A 2 LSLMPWFHGKISGQEAVQQLQP-----PEDGLFLVRESARHPGDYVLCVSFGRDVIHYR 55 (98)
T ss_dssp CTTCTTBCCSCCHHHHHHHTCS-----CCTTCEEEEECSSSTTCEEEEEEETTEEEEEE
T ss_pred CccCcccCCCCCHHHHHHHccC-----CCCcEEEEEeCCCCCCcEEEEEEECCceEEEE
Confidence 34567776 5788887777753 2689999998765443 3344456555443
No 65
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=53.58 E-value=22 Score=18.35 Aligned_cols=31 Identities=16% Similarity=0.050 Sum_probs=21.8
Q ss_pred ceeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824 55 EFFLPGEVIMEQGNVVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 55 ~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~ 85 (94)
..+.+|..+-..-.....+++|++|.+.+..
T Consensus 45 ~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~ 75 (115)
T 1yhf_A 45 FSLDKGQEIGRHSSPGDAMVTILSGLAEITI 75 (115)
T ss_dssp EEECTTCEEEEECCSSEEEEEEEESEEEEEE
T ss_pred EEECCCCccCCEECCCcEEEEEEeCEEEEEE
Confidence 4566776654433445689999999998875
No 66
>3kvp_A Uncharacterized protein YMZC; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus subtilis}
Probab=53.54 E-value=20 Score=17.86 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=18.1
Q ss_pred CeEEEEeccEEEEEeeCCCCCc
Q 042824 71 DQLYFVCHGVLEEVGVGEDGSE 92 (94)
Q Consensus 71 ~~~y~i~~G~v~v~~~~~~g~e 92 (94)
..|.++..|.+++++.+++-.+
T Consensus 30 nhFgv~e~g~iKIykyde~tNe 51 (72)
T 3kvp_A 30 NHFGVMEDGYIKIYEYNESRNE 51 (72)
T ss_dssp TEEEEEETTEEEEEEEETTTTE
T ss_pred CEEEEEeCCEEEEEEeCCCCCe
Confidence 5789999999999998876443
No 67
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=53.07 E-value=20 Score=18.93 Aligned_cols=31 Identities=16% Similarity=0.053 Sum_probs=22.4
Q ss_pred ceeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824 55 EFFLPGEVIMEQGNVVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 55 ~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~ 85 (94)
..+.+|..+-..-.....+++|++|.+.+..
T Consensus 46 ~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~ 76 (126)
T 4e2g_A 46 VRIEPNTEMPAHEHPHEQAGVMLEGTLELTI 76 (126)
T ss_dssp EEECTTCEEEEECCSSEEEEEEEEECEEEEE
T ss_pred EEECCCCcCCCccCCCceEEEEEEeEEEEEE
Confidence 4567777655444445779999999998876
No 68
>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced, ATP-binding, cell membrane, cytoplasm, membrane, nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens} PDB: 3eac_A
Probab=52.68 E-value=23 Score=18.43 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=32.4
Q ss_pred hhcCcCCC-CCCHHHHHHHHhhcccceeccCCeEEecCCccCe---EEEEeccEEEEEe
Q 042824 31 IEKVSLFK-GCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQ---LYFVCHGVLEEVG 85 (94)
Q Consensus 31 l~~~~~f~-~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~---~y~i~~G~v~v~~ 85 (94)
|...|||- .++....+.++.. -..|.+++|..+...+ +-+...|.+.=+.
T Consensus 5 L~~~~Wyhg~isr~~Ae~lL~~-----~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~ 58 (106)
T 3eaz_A 5 LSLMPWFHGKITREQAERLLYP-----PETGLFLVRESTNYPGDYTLCVSSDGKVEHYR 58 (106)
T ss_dssp GGGCTTBCCSCCHHHHHHHTCS-----CCTTEEEEEECTTSTTCEEEEEEETTEEEEEE
T ss_pred cccCCCcCCCCCHHHHHHHhCC-----CCCCEEEEEECCCCCCcEEEEEEeCCceEEEE
Confidence 56678776 5888888877753 2689999998864333 3344456555443
No 69
>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.40 E-value=28 Score=18.66 Aligned_cols=34 Identities=6% Similarity=0.176 Sum_probs=25.7
Q ss_pred hhcCcCCC-CCCHHHHHHHHhhcccceeccCCeEEecCCc
Q 042824 31 IEKVSLFK-GCSSEFINQIVTRLHEEFFLPGEVIMEQGNV 69 (94)
Q Consensus 31 l~~~~~f~-~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~ 69 (94)
+...+||- .++....+.++... ..|.+++|..+.
T Consensus 13 l~~~~WyhG~isR~~Ae~lL~~~-----~~G~FLVR~S~~ 47 (118)
T 2dlz_A 13 YTAYPWFAGNMERQQTDNLLKSH-----ASGTYLIRERPA 47 (118)
T ss_dssp GGGSTTEEESCCHHHHHHHHHHS-----CTTBEEEECCSC
T ss_pred cccCCceecCCCHHHHHHHhcCC-----CCCEEEEEeCCC
Confidence 45667775 68888888877652 789999998864
No 70
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=49.20 E-value=25 Score=18.49 Aligned_cols=32 Identities=19% Similarity=0.088 Sum_probs=21.5
Q ss_pred cceeccCCeEEecCCcc-CeEEEEeccEEEEEe
Q 042824 54 EEFFLPGEVIMEQGNVV-DQLYFVCHGVLEEVG 85 (94)
Q Consensus 54 ~~~~~~ge~i~~~g~~~-~~~y~i~~G~v~v~~ 85 (94)
...+.+|..+-..-... ..+++|++|.+.+..
T Consensus 43 ~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~ 75 (125)
T 3h8u_A 43 VWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQ 75 (125)
T ss_dssp EEEECTTCEECCC-CTTCEEEEEEEECEEEEEC
T ss_pred EEEECCCCcCCcccCCCCeEEEEEEEeEEEEEE
Confidence 34567776655444443 578889999998865
No 71
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=48.78 E-value=26 Score=17.79 Aligned_cols=31 Identities=26% Similarity=0.293 Sum_probs=21.8
Q ss_pred ceeccCCeEEec--CCc-cCeEEEEeccEEEEEe
Q 042824 55 EFFLPGEVIMEQ--GNV-VDQLYFVCHGVLEEVG 85 (94)
Q Consensus 55 ~~~~~ge~i~~~--g~~-~~~~y~i~~G~v~v~~ 85 (94)
..+.+|..+-.. -.. ...+++|++|.+.+..
T Consensus 26 ~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~ 59 (113)
T 2gu9_A 26 MVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV 59 (113)
T ss_dssp EEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE
T ss_pred EEECCCCccCCcccccCCCcEEEEEEeCEEEEEE
Confidence 456777765443 333 5679999999998875
No 72
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=48.39 E-value=34 Score=21.86 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=24.5
Q ss_pred ceeccCCeEEecCCcc-CeEEEEeccEEEEEeeCCCCC
Q 042824 55 EFFLPGEVIMEQGNVV-DQLYFVCHGVLEEVGVGEDGS 91 (94)
Q Consensus 55 ~~~~~ge~i~~~g~~~-~~~y~i~~G~v~v~~~~~~g~ 91 (94)
..+.+|..+-..-... ..+++|++|.+.+...+.+|+
T Consensus 239 ~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~ 276 (361)
T 2vqa_A 239 IHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGK 276 (361)
T ss_dssp EEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTC
T ss_pred EEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCc
Confidence 4556666543332333 789999999999887555554
No 73
>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth regulation, transforming protein, alternative initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB: 1tce_A*
Probab=47.89 E-value=14 Score=19.41 Aligned_cols=49 Identities=12% Similarity=0.177 Sum_probs=31.8
Q ss_pred hhcCcCCC-CCCHHHHHHHHhhcccceeccCCeEEecCCccCe---EEEEeccEEEEEee
Q 042824 31 IEKVSLFK-GCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQ---LYFVCHGVLEEVGV 86 (94)
Q Consensus 31 l~~~~~f~-~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~---~y~i~~G~v~v~~~ 86 (94)
|...++|- .++....+.++. ..|.+++|..+...+ +.+...|.+.=+..
T Consensus 4 l~~~~Wyhg~isR~~Ae~lL~-------~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I 56 (104)
T 1mil_A 4 LRGEPWFHGKLSRREAEALLQ-------LNGDFLVRESTTTPGQYVLTGLQSGQPKHLLL 56 (104)
T ss_dssp TTTCTTBCSSCCHHHHHTTCC-------STTEEEEEECCSSCSSEEEEEEETTEEEEEEE
T ss_pred cccCCcCCCCCCHHHHHHHhc-------cCCcEEEEeCCCCCCCEEEEEEECCEEEEEEE
Confidence 45667776 577777776664 589999998864332 44445666665544
No 74
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A*
Probab=47.85 E-value=29 Score=18.01 Aligned_cols=51 Identities=20% Similarity=0.322 Sum_probs=31.5
Q ss_pred hcCcCCC-CCCHHHHHHHHhhcccceeccCCeEEecCCccCe---EEEEeccEEEEEee
Q 042824 32 EKVSLFK-GCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQ---LYFVCHGVLEEVGV 86 (94)
Q Consensus 32 ~~~~~f~-~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~---~y~i~~G~v~v~~~ 86 (94)
...++|- .++....+.++..-. ..|.+++|..+...+ +-+...|.+.=+..
T Consensus 2 ~~~~Wyhg~isR~~Ae~lL~~~~----~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I 56 (104)
T 1d4t_A 2 DAVAVYHGKISRETGEKLLLATG----LDGSYLLRDSESVPGVYCLCVLYHGYIYTYRV 56 (104)
T ss_dssp TTCTTBCCSCCHHHHHHHHHHHC----CTTEEEEEECSSSTTCEEEEEEETTEEEEEEE
T ss_pred CCCceEccCCCHHHHHHHHHhcC----CCCEEEEeeCCCCCCCEEEEEEECCeEEEEEE
Confidence 3456665 688888887775421 679999998753332 33344566655544
No 75
>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain, phosphotyrosine binding, signaling protein, signaling protein-antagonist complex; HET: PTR; 1.60A {Homo sapiens} SCOP: d.93.1.1 PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A* 3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A* 2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A* 1fyr_A* ...
Probab=46.97 E-value=33 Score=18.41 Aligned_cols=52 Identities=8% Similarity=0.105 Sum_probs=33.7
Q ss_pred hhcCcCCC-CCCHHHHHHHHhhcccceeccCCeEEecCCccCe---EEEEeccEEEEEee
Q 042824 31 IEKVSLFK-GCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQ---LYFVCHGVLEEVGV 86 (94)
Q Consensus 31 l~~~~~f~-~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~---~y~i~~G~v~v~~~ 86 (94)
|...+||- .++....+.++.. .-..|.+++|..+...+ +-+...|.+.=+..
T Consensus 3 L~~~~WyhG~isR~eAe~lL~~----~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I 58 (117)
T 3ov1_A 3 MKPHPWFFGKIPRAKAEEMLSK----QRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 58 (117)
T ss_dssp CCCCTTBCCSCCHHHHHHHHHT----CCSTTBEEEEECSSSTTCEEEEEEETTEEEEEEC
T ss_pred cccCCcccCCCCHHHHHHHHhC----CCCCCcEEEEeCCCCCCCEEEEEecCCceEEEEE
Confidence 34567766 5888888887765 23569999998864432 34445666665543
No 76
>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_A 3t04_A 1ab2_A
Probab=45.70 E-value=32 Score=18.09 Aligned_cols=51 Identities=12% Similarity=0.209 Sum_probs=33.0
Q ss_pred hhcCcCCC-CCCHHHHHHHHhhcccceeccCCeEEecCCccCe---EEEEeccEEEEEee
Q 042824 31 IEKVSLFK-GCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQ---LYFVCHGVLEEVGV 86 (94)
Q Consensus 31 l~~~~~f~-~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~---~y~i~~G~v~v~~~ 86 (94)
|...+||- .++....+.++.. -..|.+++|..+...+ +-+...|.+.=+..
T Consensus 2 L~~~~Wyhg~isR~~Ae~lL~~-----~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I 56 (112)
T 3k2m_A 2 LEKHSWYHGPVSRNAAEYLLSS-----GINGSFLVRESESSPGQRSISLRYEGRVYHYRI 56 (112)
T ss_dssp GGGSTTEEESCCHHHHHHHTTT-----CCTTEEEEEECSSSTTCEEEEEEETTEEEEEEE
T ss_pred CccCcceeeCCCHHHHHHHhcc-----CCCceEEEEeCCCCCCCEEEEEEeCCcEEEEEE
Confidence 45667776 6888887777653 2589999998854333 34445666655544
No 77
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=45.59 E-value=12 Score=17.15 Aligned_cols=15 Identities=27% Similarity=0.636 Sum_probs=8.6
Q ss_pred hHHHhhCcHHHHHHH
Q 042824 8 ASVLHDIPVSIRAKI 22 (94)
Q Consensus 8 ~~~l~~lp~~l~~~~ 22 (94)
.++++.||.-++.++
T Consensus 18 ~eVF~~LP~dIQ~El 32 (48)
T 2kwv_A 18 QEVFKQLPADIQEEI 32 (48)
T ss_dssp GGGTTTSCHHHHHHH
T ss_pred HHHHHHCcHHHHHHH
Confidence 345566666665554
No 78
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=45.46 E-value=16 Score=24.43 Aligned_cols=37 Identities=19% Similarity=0.154 Sum_probs=27.4
Q ss_pred cccceeccCCeEEecCCccCeEEEEeccEEEEEeeCC
Q 042824 52 LHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGE 88 (94)
Q Consensus 52 ~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~ 88 (94)
+....+.||..+...-...+.+++|++|++.+...++
T Consensus 51 ~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~ 87 (416)
T 1uij_A 51 IVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNN 87 (416)
T ss_dssp EEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECS
T ss_pred EEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEEC
Confidence 3446778888666555567789999999999876554
No 79
>2lnw_A VAV-2, guanine nucleotide exchange factor VAV2; signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2lnx_A
Probab=45.38 E-value=36 Score=18.43 Aligned_cols=37 Identities=5% Similarity=0.157 Sum_probs=27.1
Q ss_pred hhcCcCCC-CCCHHHHHHHHhhcccceeccCCeEEecCCccCe
Q 042824 31 IEKVSLFK-GCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQ 72 (94)
Q Consensus 31 l~~~~~f~-~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~ 72 (94)
|...+||- .++....+.++..- ..|.+++|..+...+
T Consensus 19 l~~~~WyhG~isR~eAe~lL~~~-----~~G~FLVR~S~~~~g 56 (122)
T 2lnw_A 19 YTAYPWFAGNMERQQTDNLLKSH-----ASGTYLIRERPAEAE 56 (122)
T ss_dssp STTSTTBCCSCCHHHHHHHHHHS-----CTTBEEEEECCCSSE
T ss_pred cccCcCCCcCCCHHHHHHHhcCC-----CCCeEEEEeCCCCCC
Confidence 45667776 68888888877652 589999999875444
No 80
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=45.19 E-value=22 Score=23.98 Aligned_cols=38 Identities=21% Similarity=0.146 Sum_probs=28.4
Q ss_pred cccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCC
Q 042824 52 LHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGED 89 (94)
Q Consensus 52 ~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~ 89 (94)
+....+.||..+...-...+.+++|++|++.+...+++
T Consensus 63 ~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~ 100 (434)
T 2ea7_A 63 VVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPD 100 (434)
T ss_dssp EEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSS
T ss_pred EEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCC
Confidence 34467788887766655677899999999998776543
No 81
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=44.97 E-value=35 Score=18.27 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=21.5
Q ss_pred ceeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824 55 EFFLPGEVIMEQGNVVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 55 ~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~ 85 (94)
..+.+|..+-..- ..+.+++|++|.+.+..
T Consensus 45 ~~~~pG~~~~~H~-~~~E~~~Vl~G~~~~~~ 74 (119)
T 3lwc_A 45 GRYAPGQSLTETM-AVDDVMIVLEGRLSVST 74 (119)
T ss_dssp EEECTTCEEEEEC-SSEEEEEEEEEEEEEEE
T ss_pred EEECCCCCcCccC-CCCEEEEEEeCEEEEEE
Confidence 3456676544332 56789999999999876
No 82
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=44.60 E-value=28 Score=17.95 Aligned_cols=31 Identities=16% Similarity=0.131 Sum_probs=21.2
Q ss_pred ceeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824 55 EFFLPGEVIMEQGNVVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 55 ~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~ 85 (94)
..+.+|..+-..-.....+++|++|.+.+..
T Consensus 39 ~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~ 69 (116)
T 2pfw_A 39 IWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV 69 (116)
T ss_dssp EEECTTEEEEEECCSSEEEEEEEEECEEEEE
T ss_pred EEECCCCcCCcEECCcceEEEEEeeEEEEEE
Confidence 4567776543333346679999999998775
No 83
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=44.55 E-value=11 Score=19.15 Aligned_cols=31 Identities=19% Similarity=0.039 Sum_probs=19.0
Q ss_pred ceeccCCeEEecCCccC-eEEEEeccEEEEEe
Q 042824 55 EFFLPGEVIMEQGNVVD-QLYFVCHGVLEEVG 85 (94)
Q Consensus 55 ~~~~~ge~i~~~g~~~~-~~y~i~~G~v~v~~ 85 (94)
..+.||...-..-.... .+++|++|.+.+..
T Consensus 23 ~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~ 54 (97)
T 2fqp_A 23 WRFPPGGETGWHRHSMDYVVVPMTTGPLLLET 54 (97)
T ss_dssp EEECTTCBCCSEECCSCEEEEESSCEEEEEEE
T ss_pred EEECCCCCCCCEECCCCcEEEEEeecEEEEEe
Confidence 45566654422222333 48889999988876
No 84
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=44.39 E-value=18 Score=24.50 Aligned_cols=36 Identities=25% Similarity=0.210 Sum_probs=26.3
Q ss_pred cceeccCCeEEecCCccCeEEEEeccEEEEEeeCCC
Q 042824 54 EEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGED 89 (94)
Q Consensus 54 ~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~ 89 (94)
...+.||..+...-..++.+++|++|++.+...+++
T Consensus 90 ~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~ 125 (445)
T 2cav_A 90 EYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPD 125 (445)
T ss_dssp EEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETT
T ss_pred EEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCC
Confidence 356788876655555577899999999988765444
No 85
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=44.24 E-value=6.2 Score=20.57 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=20.1
Q ss_pred cceeccCCeEEecCCccC-eEEEEeccEEEEEe
Q 042824 54 EEFFLPGEVIMEQGNVVD-QLYFVCHGVLEEVG 85 (94)
Q Consensus 54 ~~~~~~ge~i~~~g~~~~-~~y~i~~G~v~v~~ 85 (94)
...++||.-+=..-...+ ..|+|.+|.+.+..
T Consensus 21 r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~ 53 (98)
T 3lag_A 21 EWRLPPGSATGHHTHGMDYVVVPMADGEMTIVA 53 (98)
T ss_dssp EEEECTTEECCSEECCSCEEEEESSCBC-CEEC
T ss_pred EEEECCCCccCcEECCCcEEEEEEeccEEEEEe
Confidence 356677776655544444 46777788888765
No 86
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=41.57 E-value=26 Score=19.09 Aligned_cols=29 Identities=10% Similarity=-0.004 Sum_probs=19.8
Q ss_pred eeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824 56 FFLPGEVIMEQGNVVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 56 ~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~ 85 (94)
...+|..-....+ .+.+++|++|.+.+..
T Consensus 55 ~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~ 83 (123)
T 3bcw_A 55 ESTSGSFQSNTTG-YIEYCHIIEGEARLVD 83 (123)
T ss_dssp EEEEEEEECCCTT-EEEEEEEEEEEEEEEC
T ss_pred EECCCceeeEcCC-CcEEEEEEEEEEEEEE
Confidence 4456655544332 3789999999999886
No 87
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=41.37 E-value=39 Score=20.43 Aligned_cols=34 Identities=15% Similarity=0.082 Sum_probs=25.4
Q ss_pred cccceeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824 52 LHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 52 ~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~ 85 (94)
+....+.+|..+-..-.....+++|++|.+.+..
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~ 69 (243)
T 3h7j_A 36 VLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV 69 (243)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE
Confidence 3444578887766555567789999999999876
No 88
>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1ka7_A
Probab=41.25 E-value=43 Score=18.18 Aligned_cols=50 Identities=18% Similarity=0.306 Sum_probs=29.9
Q ss_pred hcCcCCC-CCCHHHHHHHHhhcccceeccCCeEEecCCccCe---EEEEeccEEEEEe
Q 042824 32 EKVSLFK-GCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQ---LYFVCHGVLEEVG 85 (94)
Q Consensus 32 ~~~~~f~-~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~---~y~i~~G~v~v~~ 85 (94)
...+||- .++....+.++..-. ..|.+++|..+...+ +-+...|.+.=+.
T Consensus 2 ~~~~WyhG~isR~eAe~lL~~~~----~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~ 55 (128)
T 1ka6_A 2 DAVAVYHGKISRETGEKLLLATG----LDGSYLLRDSESVPGVYCLCVLYHGYIYTYR 55 (128)
T ss_dssp CCCSSBCCSCCHHHHHHHHHHHC----CTTCEEEEECSSSTTCEEEEEESSSCEEEEE
T ss_pred CCCcccCCCCCHHHHHHHHhcCC----CCCEEEEeecCCCCCCEEEEEEeCCEEEEEE
Confidence 3456665 688888887775321 679999998753332 2233345554443
No 89
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=41.11 E-value=21 Score=19.91 Aligned_cols=32 Identities=16% Similarity=0.106 Sum_probs=25.2
Q ss_pred cccceeccCCeEEecCCccCeEEEEeccEEEE
Q 042824 52 LHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEE 83 (94)
Q Consensus 52 ~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v 83 (94)
+....+++|..+-.........++|++|....
T Consensus 46 ~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~ 77 (145)
T 2o1q_A 46 TAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDV 77 (145)
T ss_dssp EEEEEECTTEEECCEEESSCEEEEEEEEEEEE
T ss_pred EEEEEECCCCCCCccCCCCCEEEEEEEeEEEE
Confidence 34567888888877777777889999999874
No 90
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=40.83 E-value=36 Score=19.39 Aligned_cols=31 Identities=19% Similarity=0.082 Sum_probs=20.6
Q ss_pred ceeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824 55 EFFLPGEVIMEQGNVVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 55 ~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~ 85 (94)
..+.+|..+-..-.....+++|++|.+.+..
T Consensus 61 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i 91 (167)
T 3ibm_A 61 FEVEPGGYTTLERHEHTHVVMVVRGHAEVVL 91 (167)
T ss_dssp EEECTTCBCCCBBCSSCEEEEEEESEEEEEE
T ss_pred EEECCCCCCCCccCCCcEEEEEEeCEEEEEE
Confidence 3455665443333346779999999998875
No 91
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=40.72 E-value=33 Score=17.79 Aligned_cols=30 Identities=10% Similarity=0.018 Sum_probs=18.2
Q ss_pred eeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824 56 FFLPGEVIMEQGNVVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 56 ~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~ 85 (94)
.+.+|..+-..-.....+++|++|.+.+..
T Consensus 33 ~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i 62 (117)
T 2b8m_A 33 VLPRGEQMPKHYSNSYVHLIIIKGEMTLTL 62 (117)
T ss_dssp EEETTCBCCCEECSSCEEEEEEESEEEEEE
T ss_pred EECCCCcCCCEeCCCcEEEEEEeCEEEEEE
Confidence 344554432222234568889999988876
No 92
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=40.50 E-value=25 Score=20.74 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=24.2
Q ss_pred ccceeccCCeEEecCCccCeEEEEeccEEE
Q 042824 53 HEEFFLPGEVIMEQGNVVDQLYFVCHGVLE 82 (94)
Q Consensus 53 ~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~ 82 (94)
....+.+|..+-.....+..+.+|++|...
T Consensus 128 ~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~ 157 (195)
T 2q1z_B 128 RLLWIPGGQAVPDHGHRGLELTLVLQGAFR 157 (195)
T ss_dssp EEEEECTTCBCCCCCCSSCEEEEEEESEEE
T ss_pred EEEEECCCCCCCCcCCCCeEEEEEEEEEEE
Confidence 446778888888887788889999999854
No 93
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=40.17 E-value=35 Score=16.85 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=20.7
Q ss_pred ceeccCCeEEecCCcc-CeEEEEeccEEEEEe
Q 042824 55 EFFLPGEVIMEQGNVV-DQLYFVCHGVLEEVG 85 (94)
Q Consensus 55 ~~~~~ge~i~~~g~~~-~~~y~i~~G~v~v~~ 85 (94)
..+.+|..+-..-... ..+++|++|.+.+..
T Consensus 33 ~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~ 64 (105)
T 1v70_A 33 YALLPGQAQKVHVHEGSDKVYYALEGEVVVRV 64 (105)
T ss_dssp EEECTTCEEEEECCSSCEEEEEEEESCEEEEE
T ss_pred EEECCCCcCCccCCCCCcEEEEEEeCEEEEEE
Confidence 4567776654333333 468999999998765
No 94
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=40.10 E-value=42 Score=17.79 Aligned_cols=31 Identities=23% Similarity=0.256 Sum_probs=20.3
Q ss_pred ceeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824 55 EFFLPGEVIMEQGNVVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 55 ~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~ 85 (94)
..+.+|..+-.--.....+++|++|.+.+..
T Consensus 53 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i 83 (126)
T 1vj2_A 53 FTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK 83 (126)
T ss_dssp EEEEEEEEEEEECCSSCEEEEEEESEEEEEC
T ss_pred EEECCCCcCCceeCCCcEEEEEEEeEEEEEE
Confidence 3455555443333346788999999998875
No 95
>2lh0_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; NMR {Saccharomyces cerevisiae}
Probab=38.82 E-value=19 Score=17.97 Aligned_cols=14 Identities=36% Similarity=0.655 Sum_probs=12.1
Q ss_pred HHhhCcHHHHHHHH
Q 042824 10 VLHDIPVSIRAKIS 23 (94)
Q Consensus 10 ~l~~lp~~l~~~~~ 23 (94)
.|+.||+.||.++.
T Consensus 8 wL~~LP~~Lq~kV~ 21 (70)
T 2lh0_A 8 FLDELPESLSRKIG 21 (70)
T ss_dssp GGGGSCHHHHHHHH
T ss_pred HHHhCCHHHHHHHH
Confidence 68999999999864
No 96
>1dgw_X Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_X
Probab=38.69 E-value=22 Score=17.95 Aligned_cols=47 Identities=13% Similarity=0.095 Sum_probs=30.2
Q ss_pred HHHHHhhcccceeccCCeEE-ecCCccCeEEEEeccEEEEEeeCCCCC
Q 042824 45 INQIVTRLHEEFFLPGEVIM-EQGNVVDQLYFVCHGVLEEVGVGEDGS 91 (94)
Q Consensus 45 ~~~l~~~~~~~~~~~ge~i~-~~g~~~~~~y~i~~G~v~v~~~~~~g~ 91 (94)
+..+--.+....+.+|-+.. .-.-.+..+.+|.+|.+.+-..+++|+
T Consensus 31 Ln~lgls~~r~~l~~gg~~~PH~hprA~ei~~V~~G~~~v~~V~~~g~ 78 (79)
T 1dgw_X 31 LRDLDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVELVGLEQQ 78 (79)
T ss_dssp HHTTTEEEEEEEECTTCEEEEEEESSCEEEEEEEESCEEEEEEEEC--
T ss_pred cCcCCcceEEEEEcCCcCcCCccCCCCcEEEEEEeceEEEEEecCCCC
Confidence 44444445566777876644 233346789999999988887777664
No 97
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=38.67 E-value=55 Score=22.37 Aligned_cols=38 Identities=11% Similarity=0.099 Sum_probs=25.7
Q ss_pred cceeccCCeEEecCCc-cCeEEEEeccEEEEEeeCCCCC
Q 042824 54 EEFFLPGEVIMEQGNV-VDQLYFVCHGVLEEVGVGEDGS 91 (94)
Q Consensus 54 ~~~~~~ge~i~~~g~~-~~~~y~i~~G~v~v~~~~~~g~ 91 (94)
...+.+|-.+-.--.+ +..+++|++|.+.+...+++|.
T Consensus 342 ~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~ 380 (476)
T 1fxz_A 342 FGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGE 380 (476)
T ss_dssp EEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSC
T ss_pred EEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCC
Confidence 3456666654332223 5789999999999988776653
No 98
>1xw3_A Sulfiredoxin; retroreduction, sulfinic acid, peroxiredoxin, ATP, oxidoreductase; 1.65A {Homo sapiens} SCOP: d.268.1.4 PDB: 1xw4_X* 3cyi_A* 2rii_X 3hy2_X*
Probab=38.35 E-value=48 Score=17.93 Aligned_cols=47 Identities=15% Similarity=0.190 Sum_probs=32.8
Q ss_pred CcCCCCCCHHHHHHHHhhccccee--ccCCeEEecCCccCeEEEEeccE
Q 042824 34 VSLFKGCSSEFINQIVTRLHEEFF--LPGEVIMEQGNVVDQLYFVCHGV 80 (94)
Q Consensus 34 ~~~f~~l~~~~~~~l~~~~~~~~~--~~ge~i~~~g~~~~~~y~i~~G~ 80 (94)
.|+-+.+++..++.|+..++..-. +|=++.-..|..+...|++..|.
T Consensus 24 ~p~~~~~d~~kv~eL~~SI~~~Gl~l~PI~Vr~~~g~~~~~~Y~li~G~ 72 (110)
T 1xw3_A 24 RPLPSVLDPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGC 72 (110)
T ss_dssp CCSCCCCCHHHHHHHHHHHHHCGGGSCCEEEEEEECTTSCEEEECCSCH
T ss_pred CCCCCccCHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcEEEEcch
Confidence 466668999999999998877543 45333333455567889988884
No 99
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=38.22 E-value=40 Score=20.65 Aligned_cols=28 Identities=21% Similarity=0.051 Sum_probs=19.1
Q ss_pred ccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824 58 LPGEVIMEQGNVVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 58 ~~ge~i~~~g~~~~~~y~i~~G~v~v~~ 85 (94)
.+|...=.-....+.+|+|++|.+.+..
T Consensus 140 ~PG~~yP~HsHp~EEiy~VLsG~~e~~v 167 (217)
T 4b29_A 140 GPGLDYGWHEHLPEELYSVVSGRALFHL 167 (217)
T ss_dssp CSSCEEEEEECSSEEEEEEEEECEEEEE
T ss_pred CCCCcCCCCCCCCceEEEEEeCCEEEEE
Confidence 3443333333557789999999988876
No 100
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=37.93 E-value=24 Score=19.32 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=22.0
Q ss_pred eeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCC
Q 042824 56 FFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGS 91 (94)
Q Consensus 56 ~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~ 91 (94)
...+|..-.... ..+.++.|++|.+.+.. .+|.
T Consensus 48 e~tPG~~~~~~~-~~~E~~~iLeG~~~lt~--ddG~ 80 (116)
T 3es4_A 48 MAEPGIYNYAGR-DLEETFVVVEGEALYSQ--ADAD 80 (116)
T ss_dssp EECSEEEEECCC-SEEEEEEEEECCEEEEE--TTCC
T ss_pred ecCCceeECeeC-CCcEEEEEEEeEEEEEe--CCCe
Confidence 446665544443 23479999999999986 3454
No 101
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=37.67 E-value=47 Score=22.73 Aligned_cols=40 Identities=8% Similarity=-0.200 Sum_probs=30.1
Q ss_pred cccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCC
Q 042824 52 LHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGS 91 (94)
Q Consensus 52 ~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~ 91 (94)
+....+.||-++.-.-..+..+++|+.|+..+-...+++.
T Consensus 50 ~~r~~l~Pggl~~Ph~~~a~ei~yV~~G~g~~g~v~pg~~ 89 (476)
T 1fxz_A 50 LSRCTLNRNALRRPSYTNGPQEIYIQQGKGIFGMIYPGCP 89 (476)
T ss_dssp EEEEEECTTEEEEEEEESSCEEEEEEECCEEEEEECTTCC
T ss_pred EEEEEEcCCCEecceecCCceEEEEEecEEEEEEEcCCCc
Confidence 3446788888876555557899999999998888776554
No 102
>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development, SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=37.61 E-value=28 Score=18.72 Aligned_cols=48 Identities=6% Similarity=0.118 Sum_probs=30.4
Q ss_pred hhcCcCCC-CCCHHHHHHHHhhcccceeccCCeEEecCCccCe---EEEEeccEEEEEe
Q 042824 31 IEKVSLFK-GCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQ---LYFVCHGVLEEVG 85 (94)
Q Consensus 31 l~~~~~f~-~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~---~y~i~~G~v~v~~ 85 (94)
+...++|- .++....+.++. +.|.+++|..+...+ +.+...|.+.=+.
T Consensus 14 ~~~~~WyhG~isR~eAe~lL~-------~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~ 65 (116)
T 2kk6_A 14 LAEQDWYHGAIPRIEAQELLK-------KQGDFLVRESHGKPGEYVLSVYSDGQRRHFI 65 (116)
T ss_dssp TTTCTTEEESCCHHHHHHTCC-------STTCEEEEECTTCTTCEEEEEEETTEEEEEE
T ss_pred cccCCCccCCCCHHHHHHHhc-------cCCcEEEEECCCCCCcEEEEEEECCeEEEEE
Confidence 34556665 688777777664 479999999875432 3344456655443
No 103
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=37.25 E-value=63 Score=22.39 Aligned_cols=41 Identities=7% Similarity=0.091 Sum_probs=28.5
Q ss_pred hcccceeccCCeEEecC-CccCeEEEEeccEEEEEeeCCCCC
Q 042824 51 RLHEEFFLPGEVIMEQG-NVVDQLYFVCHGVLEEVGVGEDGS 91 (94)
Q Consensus 51 ~~~~~~~~~ge~i~~~g-~~~~~~y~i~~G~v~v~~~~~~g~ 91 (94)
.+....+.+|-.+-.-- ..+..+++|++|.+.+...+++|.
T Consensus 373 s~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~ 414 (510)
T 3c3v_A 373 SAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGN 414 (510)
T ss_dssp EEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSC
T ss_pred EEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCC
Confidence 34446778887644332 236789999999999988776654
No 104
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=37.22 E-value=54 Score=22.30 Aligned_cols=39 Identities=13% Similarity=0.043 Sum_probs=29.1
Q ss_pred cccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCC
Q 042824 52 LHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDG 90 (94)
Q Consensus 52 ~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g 90 (94)
+....+.||.++.-.-..+..+++|++|+..+-...+++
T Consensus 65 ~~r~~i~pggl~~Ph~h~a~ei~yVl~G~g~vg~v~p~~ 103 (459)
T 2e9q_A 65 MIRHTIRPKGLLLPGFSNAPKLIFVAQGFGIRGIAIPGC 103 (459)
T ss_dssp EEEEEECTTEEEEEEEESSCEEEEEEECEEEEEECCTTC
T ss_pred EEEEEEcCCCEecceecCCceEEEEEeeEEEEEEEeCCC
Confidence 344678888877554455789999999999988765554
No 105
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=35.82 E-value=38 Score=20.59 Aligned_cols=34 Identities=12% Similarity=0.044 Sum_probs=23.9
Q ss_pred cccceeccCCeEEe-cCCccCeEEEEeccEEEEEe
Q 042824 52 LHEEFFLPGEVIME-QGNVVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 52 ~~~~~~~~ge~i~~-~g~~~~~~y~i~~G~v~v~~ 85 (94)
+....++||..+=. .-......++|++|++.+..
T Consensus 167 ~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~ 201 (246)
T 1sfn_A 167 VSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL 201 (246)
T ss_dssp EEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE
T ss_pred EEEEEECCCCccCcccCCCceEEEEEEECEEEEEE
Confidence 34456778776543 34456789999999998875
No 106
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=35.57 E-value=70 Score=22.01 Aligned_cols=46 Identities=11% Similarity=0.046 Sum_probs=30.3
Q ss_pred HHHHhhcccceeccCCeEEecC-CccCeEEEEeccEEEEEeeCCCCC
Q 042824 46 NQIVTRLHEEFFLPGEVIMEQG-NVVDQLYFVCHGVLEEVGVGEDGS 91 (94)
Q Consensus 46 ~~l~~~~~~~~~~~ge~i~~~g-~~~~~~y~i~~G~v~v~~~~~~g~ 91 (94)
..+--.+....+.+|-.+-.-- ..++.+++|++|.+.+...+++|.
T Consensus 363 ~~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~ 409 (493)
T 2d5f_A 363 RQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGN 409 (493)
T ss_dssp HHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSC
T ss_pred cccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCC
Confidence 3333344556777877644332 336789999999999987766554
No 107
>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit; transferase, polymorphism, UBL conjugation, phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A 1oo4_A* 2pna_A 2pnb_A
Probab=35.50 E-value=53 Score=17.55 Aligned_cols=50 Identities=12% Similarity=0.143 Sum_probs=32.8
Q ss_pred HhhcCcCCC-CCCHHHHHHHHhhcccceeccCCeEEecCCcc-Ce---EEEEeccEEEEE
Q 042824 30 YIEKVSLFK-GCSSEFINQIVTRLHEEFFLPGEVIMEQGNVV-DQ---LYFVCHGVLEEV 84 (94)
Q Consensus 30 ~l~~~~~f~-~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~-~~---~y~i~~G~v~v~ 84 (94)
-+...+||- .++....+.++.. -+.|.+++|..+.. .+ +-+...|.+.=+
T Consensus 7 ~l~~~~WyhG~isR~eAe~lL~~-----~~~G~FLVR~S~~~~~g~y~LSv~~~~~v~H~ 61 (120)
T 2iug_A 7 SLQNAEWYWGDISREEVNEKLRD-----TADGTFLVRDASTKMHGDYTLTLRKGGNNKLI 61 (120)
T ss_dssp HHHTCTTBCCSCCHHHHHHHHTT-----CCTTEEEEEECSSGGGCSEEEEEEETTEEEEE
T ss_pred ccccCCccccCCCHHHHHHHhcC-----CCCcEEEEECCCCCCCCcEEEEEEECCEEEEE
Confidence 356678776 6888888888764 36799999987753 22 334445555443
No 108
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=35.13 E-value=32 Score=19.46 Aligned_cols=30 Identities=7% Similarity=-0.124 Sum_probs=19.6
Q ss_pred eeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824 56 FFLPGEVIMEQGNVVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 56 ~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~ 85 (94)
.+.+|..+-..-.....+++|++|.+.+..
T Consensus 50 ~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v 79 (156)
T 3kgz_A 50 EVDEGGYSTLERHAHVHAVMIHRGHGQCLV 79 (156)
T ss_dssp EEEEEEECCCBBCSSCEEEEEEEEEEEEEE
T ss_pred EECCCCccCceeCCCcEEEEEEeCEEEEEE
Confidence 345555443333345678899999998875
No 109
>3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Escherichia coli} SCOP: b.82.2.13
Probab=35.03 E-value=61 Score=18.10 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=16.7
Q ss_pred eEEEEeccEEEEEeeCCCCC
Q 042824 72 QLYFVCHGVLEEVGVGEDGS 91 (94)
Q Consensus 72 ~~y~i~~G~v~v~~~~~~g~ 91 (94)
..+.|++|.++.+..+++|.
T Consensus 41 g~l~VL~G~L~f~~~~e~g~ 60 (127)
T 3bb6_A 41 PRLSVMHGAVKYLGYADEHS 60 (127)
T ss_dssp EEEEEEESEEEEEEESSTTC
T ss_pred EEEEEEEeEEEEEEECCCCC
Confidence 57899999999997777665
No 110
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=34.49 E-value=58 Score=17.94 Aligned_cols=31 Identities=19% Similarity=0.086 Sum_probs=20.6
Q ss_pred ceeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824 55 EFFLPGEVIMEQGNVVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 55 ~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~ 85 (94)
..+.+|..+-..-.....+++|++|.+.+..
T Consensus 53 ~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~ 83 (147)
T 2f4p_A 53 VVFEPGARTHWHSHPGGQILIVTRGKGFYQE 83 (147)
T ss_dssp EEECTTCEECSEECTTCEEEEEEEEEEEEEE
T ss_pred EEECCCCccCceECCCceEEEEEeCEEEEEE
Confidence 4456666543333334679999999998876
No 111
>1yzs_A Sulfiredoxin; PARB domain fold, oxidoreductase; NMR {Homo sapiens} SCOP: d.268.1.4 PDB: 2b6f_A*
Probab=34.31 E-value=61 Score=17.90 Aligned_cols=47 Identities=15% Similarity=0.190 Sum_probs=32.4
Q ss_pred CcCCCCCCHHHHHHHHhhccccee--ccCCeEEecCCccCeEEEEeccE
Q 042824 34 VSLFKGCSSEFINQIVTRLHEEFF--LPGEVIMEQGNVVDQLYFVCHGV 80 (94)
Q Consensus 34 ~~~f~~l~~~~~~~l~~~~~~~~~--~~ge~i~~~g~~~~~~y~i~~G~ 80 (94)
.|..+.+++..+..|...++..-. +|=++.-..|..+...|++..|.
T Consensus 35 ~p~~r~~d~~kv~eL~eSI~~~Gl~~~PI~V~~~~g~~gg~~Y~l~~G~ 83 (121)
T 1yzs_A 35 RPLPSVLDPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGC 83 (121)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCGGGSCCEEEEEEECTTSCEEEECCSCH
T ss_pred CCCCCcCCHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCceEEEEecc
Confidence 466778999999999888876544 35344434555556678888884
No 112
>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal transduction inhibitor, KIT regula phosphotyrosine, signaling protein; HET: PTR; 1.45A {Homo sapiens}
Probab=33.87 E-value=62 Score=17.86 Aligned_cols=50 Identities=12% Similarity=0.091 Sum_probs=32.6
Q ss_pred HhhcCcCCC-CCCHHHHHHHHhhcccceeccCCeEEecCCccCeEE---EEeccEEEEE
Q 042824 30 YIEKVSLFK-GCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLY---FVCHGVLEEV 84 (94)
Q Consensus 30 ~l~~~~~f~-~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y---~i~~G~v~v~ 84 (94)
.+...+||- .++....+.++.. -..|.+++|..+...+.| +...|.+.=+
T Consensus 20 ~l~~~~WyhG~isR~eAe~lL~~-----~~~G~FLVR~S~~~~~~~~LSv~~~~~v~H~ 73 (141)
T 2vif_A 20 KLAKQGWYWGPITRWEAEGKLAN-----VPDGSFLVRDSSDDRYLLSLSFRSHGKTLHT 73 (141)
T ss_dssp HHHHHTCBCCSCCHHHHHHHTTT-----SCTTCEEEEECSSTTCSEEEEEEETTEEEEE
T ss_pred hhccCCCcccCCCHHHHHHHhcC-----CCCceEEEEecCCCCCCEEEEEEECCEEEEE
Confidence 356677776 6888888888754 267999999887644322 2334554443
No 113
>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.37 E-value=58 Score=17.39 Aligned_cols=51 Identities=12% Similarity=0.251 Sum_probs=33.0
Q ss_pred hhcCcCCC-CCCHHHHHHHHhhcccceeccCCeEEecCCccCe---EEEEeccEEEEEee
Q 042824 31 IEKVSLFK-GCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQ---LYFVCHGVLEEVGV 86 (94)
Q Consensus 31 l~~~~~f~-~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~---~y~i~~G~v~v~~~ 86 (94)
+...+||- .++....+.++.. -..|.+++|..+...+ +-+...|.+.=+..
T Consensus 13 l~~~~WyhG~isR~~Ae~lL~~-----~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I 67 (119)
T 2ecd_A 13 LEKHSWYHGPVSRSAAEYLLSS-----LINGSFLVRESESSPGQLSISLRYEGRVYHYRI 67 (119)
T ss_dssp CCCSSSEEEECCHHHHHHHHHT-----SCTTBEEEEEESSSTTEEEEEEECSSCEEEECC
T ss_pred cccCccccCCCCHHHHHHHhcC-----CCCCeEEEEeCCCCCCCEEEEEEECCeEEEEEE
Confidence 44567776 5888888877753 3579999998864433 33344566665544
No 114
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=32.81 E-value=34 Score=19.96 Aligned_cols=31 Identities=19% Similarity=0.028 Sum_probs=19.2
Q ss_pred ceeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824 55 EFFLPGEVIMEQGNVVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 55 ~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~ 85 (94)
..+.+|...-........+++|++|++.+..
T Consensus 84 v~l~PG~~~~~H~H~~eE~~~VLeGel~l~l 114 (172)
T 3es1_A 84 VDMLPGKESPMHRTNSIDYGIVLEGEIELEL 114 (172)
T ss_dssp EEECTTCBCCCBCCSEEEEEEEEESCEEEEC
T ss_pred EEECCCCCCCCeecCceEEEEEEeCEEEEEE
Confidence 3455555433223334567899999999875
No 115
>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain, signal transduction inhibitor nuclear protein; 1.9A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1
Probab=32.12 E-value=74 Score=18.19 Aligned_cols=39 Identities=8% Similarity=0.125 Sum_probs=28.5
Q ss_pred HhhcCcCCC-CCCHHHHHHHHhhcccceeccCCeEEecCCccCeE
Q 042824 30 YIEKVSLFK-GCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQL 73 (94)
Q Consensus 30 ~l~~~~~f~-~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~ 73 (94)
-+...+||- .++....+.++.. -..|.+++|..+...+.
T Consensus 13 ~l~~~~WyhG~isR~eAe~lL~~-----~~~G~FLVR~S~~~~~~ 52 (169)
T 2c9w_A 13 ELGQTGWYWGSMTVNEAKEKLKE-----APEGTFLIRDSSHSDYL 52 (169)
T ss_dssp HHHHTSCBCTTCCHHHHHHHHTT-----SCTTCEEEEECCSTTCS
T ss_pred hcccCCccccCCCHHHHHHHcCC-----CCCcEEEEecCCCCCCe
Confidence 456778776 6888888887753 56899999988765443
No 116
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=31.99 E-value=57 Score=16.90 Aligned_cols=31 Identities=10% Similarity=-0.116 Sum_probs=23.0
Q ss_pred ccceeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824 53 HEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 53 ~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~ 85 (94)
....+.+|..-.. .....+++|++|.+.+..
T Consensus 34 ~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i 64 (101)
T 1o5u_A 34 PIWEKEVSEFDWY--YDTNETCYILEGKVEVTT 64 (101)
T ss_dssp CEEEECSEEEEEE--CSSCEEEEEEEEEEEEEE
T ss_pred EEEEeCCCccccc--CCceEEEEEEeCEEEEEE
Confidence 3456777776544 346789999999999886
No 117
>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics; NMR {Homo sapiens}
Probab=31.79 E-value=63 Score=17.27 Aligned_cols=37 Identities=8% Similarity=-0.019 Sum_probs=26.0
Q ss_pred hcCcCCC-CCCHHHHHHHHhhcccceeccCCeEEecCCccCe
Q 042824 32 EKVSLFK-GCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQ 72 (94)
Q Consensus 32 ~~~~~f~-~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~ 72 (94)
...|||- .++....+.++..-. ..|.+++|..+...+
T Consensus 19 ~~~~WyhG~isR~eAe~lL~~~~----~~G~FLVR~S~~~~g 56 (118)
T 2el8_A 19 LETPSCFLKVSRLEAQLLLERYP----ECGNLLLRPSGDGAD 56 (118)
T ss_dssp SSSCTTCCCCCHHHHHHHHHHSS----TTCSBEEEECCSSSS
T ss_pred cCCCceecCCCHHHHHHHHhhCC----CCcEEEEeeCCCCCC
Confidence 3456665 688888888775431 789999998876443
No 118
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=31.65 E-value=37 Score=18.96 Aligned_cols=33 Identities=12% Similarity=0.119 Sum_probs=20.5
Q ss_pred ceeccCCeEEecCCccCeEEEEeccEEEEEeeC
Q 042824 55 EFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVG 87 (94)
Q Consensus 55 ~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~ 87 (94)
..+.+|..+-..-.....+++|++|.+.+...+
T Consensus 46 ~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~ 78 (163)
T 1lr5_A 46 QTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGS 78 (163)
T ss_dssp EEECTTCBCCEEEESSCEEEEEEECCEEEEECC
T ss_pred EEECCCCcCCCeECCCCeEEEEEeCEEEEEECC
Confidence 345666543222223456999999999988743
No 119
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=31.56 E-value=38 Score=19.27 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=17.9
Q ss_pred EecCCccCeEEEEeccEEEEEee
Q 042824 64 MEQGNVVDQLYFVCHGVLEEVGV 86 (94)
Q Consensus 64 ~~~g~~~~~~y~i~~G~v~v~~~ 86 (94)
+...+..+.+|+|++|.+.+...
T Consensus 44 ~h~H~~tDE~Fivl~G~l~i~~r 66 (140)
T 3d0j_A 44 LEIHHSTDEQFILSAGKAILITA 66 (140)
T ss_dssp EEEESSCCEEEEEEESCEEEEEE
T ss_pred hccCCCCCeEEEEEecEEEEEEe
Confidence 44555678999999999988764
No 120
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=30.42 E-value=34 Score=19.62 Aligned_cols=30 Identities=10% Similarity=-0.058 Sum_probs=19.4
Q ss_pred eeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824 56 FFLPGEVIMEQGNVVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 56 ~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~ 85 (94)
.+.+|..+-..-.....+++|++|.+.+..
T Consensus 59 ~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v 88 (166)
T 3jzv_A 59 EVGPGGHSTLERHQHAHGVMILKGRGHAMV 88 (166)
T ss_dssp EEEEEEECCCBBCSSCEEEEEEEECEEEEE
T ss_pred EECCCCccCceeCCCcEEEEEEeCEEEEEE
Confidence 445555443333345678889999998875
No 121
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=30.41 E-value=31 Score=21.69 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=21.1
Q ss_pred ceeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824 55 EFFLPGEVIMEQGNVVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 55 ~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~ 85 (94)
..+.||..--.....++.+.+|++|++.+..
T Consensus 75 v~l~PGg~s~~~~h~~EEfiyVleG~l~l~l 105 (266)
T 4e2q_A 75 AKMKEMSSSGLPPQDIERLIFVVEGAVTLTN 105 (266)
T ss_dssp EEECSSEECCCCCTTEEEEEEEEEECEEEEC
T ss_pred EEECcCCcCCCCCCCCeEEEEEEEEEEEEEE
Confidence 3456655432233446789999999999986
No 122
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=30.34 E-value=57 Score=20.31 Aligned_cols=34 Identities=24% Similarity=0.202 Sum_probs=24.6
Q ss_pred cccceeccCCeEEe-cCCccCeEEEEeccEEEEEe
Q 042824 52 LHEEFFLPGEVIME-QGNVVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 52 ~~~~~~~~ge~i~~-~g~~~~~~y~i~~G~v~v~~ 85 (94)
+....+.+|..+-. .-......++|++|...+..
T Consensus 193 ~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~ 227 (278)
T 1sq4_A 193 VNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL 227 (278)
T ss_dssp EEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE
T ss_pred EEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEE
Confidence 34466788887764 44445578999999998875
No 123
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=30.16 E-value=85 Score=18.30 Aligned_cols=35 Identities=20% Similarity=0.132 Sum_probs=23.5
Q ss_pred cceeccCCeEEecCCc-cCeEEEEeccEEEEEeeCC
Q 042824 54 EEFFLPGEVIMEQGNV-VDQLYFVCHGVLEEVGVGE 88 (94)
Q Consensus 54 ~~~~~~ge~i~~~g~~-~~~~y~i~~G~v~v~~~~~ 88 (94)
...+.+|...-..-.. ...+++|++|.+.+...+.
T Consensus 76 ~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~ 111 (201)
T 1fi2_A 76 RVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGS 111 (201)
T ss_dssp EEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECC
T ss_pred EEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcC
Confidence 3466777654433333 5789999999999876543
No 124
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=29.76 E-value=94 Score=21.55 Aligned_cols=38 Identities=8% Similarity=-0.216 Sum_probs=29.3
Q ss_pred ccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCC
Q 042824 53 HEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDG 90 (94)
Q Consensus 53 ~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g 90 (94)
....+.||-++.-.-.....+++|+.|+..+-...+++
T Consensus 51 ~r~~i~p~gl~lPh~~~a~~~~yV~~G~g~~g~v~pg~ 88 (510)
T 3c3v_A 51 SRLVLRRNALRRPFYSNAPQEIFIQQGRGYFGLIFPGC 88 (510)
T ss_dssp EEEEECTTEEEEEEECSSCEEEEEEECCEEEEEECTTC
T ss_pred EEEEECCCCCccceecCCCeEEEEEeCEEEEEEEeCCC
Confidence 44678888886655566789999999998888876654
No 125
>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A
Probab=29.54 E-value=60 Score=21.79 Aligned_cols=36 Identities=8% Similarity=0.115 Sum_probs=26.8
Q ss_pred ceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCC
Q 042824 55 EFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDG 90 (94)
Q Consensus 55 ~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g 90 (94)
..+.|+.++.-.--.++.+++|+.|++.+-..++++
T Consensus 49 ~~l~p~gl~~Phh~~A~ei~yV~~G~g~~g~V~~~~ 84 (418)
T 3s7i_A 49 IEAKPNTLVLPKHADADNILVIQQGQATVTVANGNN 84 (418)
T ss_dssp EEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSC
T ss_pred EEecCCceeeeeeCCCCeEEEEEEeeEEEEEEecCC
Confidence 456777776655555778999999999888776654
No 126
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=29.23 E-value=70 Score=20.50 Aligned_cols=31 Identities=16% Similarity=-0.021 Sum_probs=24.9
Q ss_pred cceeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824 54 EEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 54 ~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~ 85 (94)
...|.+|+.+..+... +.++++++|+..|..
T Consensus 211 V~l~G~Ges~~~~~~~-d~wiWqLEGss~Vt~ 241 (286)
T 2qnk_A 211 VIAYGQGSSEGLRQNV-DVWLWQLEGSSVVTM 241 (286)
T ss_dssp EEEECSEEEEECCCSS-CEEEEEEESCEEEEE
T ss_pred EEEEcCCccccccCcC-cEEEEEEcCceEEEE
Confidence 3457888888888776 999999999987665
No 127
>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}
Probab=28.90 E-value=42 Score=19.37 Aligned_cols=32 Identities=13% Similarity=0.080 Sum_probs=25.4
Q ss_pred cccceeccCCeEEecCCccCeEEEEeccEEEE
Q 042824 52 LHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEE 83 (94)
Q Consensus 52 ~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v 83 (94)
+....+++|..+-.....+....+|++|....
T Consensus 45 v~lvr~~pG~~~p~H~H~g~ee~~VL~G~f~~ 76 (165)
T 3cjx_A 45 VMRASFAPGLTLPLHFHTGTVHMYTISGCWYY 76 (165)
T ss_dssp EEEEEECTTCBCCEEEESSCEEEEEEESEEEE
T ss_pred EEEEEECCCCcCCcccCCCCEEEEEEEEEEEE
Confidence 34567888888877777788889999999875
No 128
>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain, protein protein interactions, PTR residues, HYDR peptide complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A* 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A
Probab=28.66 E-value=67 Score=16.66 Aligned_cols=52 Identities=8% Similarity=0.147 Sum_probs=32.1
Q ss_pred hhcCcCCC-CCCHHHHHHHHhhcccceeccCCeEEecCCccCe---EEEEeccEEEEEee
Q 042824 31 IEKVSLFK-GCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQ---LYFVCHGVLEEVGV 86 (94)
Q Consensus 31 l~~~~~f~-~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~---~y~i~~G~v~v~~~ 86 (94)
+.+.|||- .++....+.++..-. ..|.+++|..+...+ +-+...|.+.=+..
T Consensus 4 l~~~~Wyhg~isr~~Ae~lL~~~~----~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I 59 (109)
T 3tkz_A 4 MTSRRWFHPNITGVEAENLLLTRG----VDGSFLARPSKSNPGDFTLSVRRNGAVTHIKI 59 (109)
T ss_dssp ---CCSBCTTCCHHHHHHHHHHHC----CTTEEEEEECSSSTTCEEEEEEETTEEEEEEE
T ss_pred cccCCceecCCCHHHHHHHHhcCC----CCCEEEEEecCCCCCCEEEEEEECCEEEEEEE
Confidence 45677776 588888777765421 689999998864333 33445666665544
No 129
>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide complex, cytokine regulator; HET: PTR; 2.00A {Mus musculus}
Probab=27.77 E-value=87 Score=17.62 Aligned_cols=52 Identities=4% Similarity=0.132 Sum_probs=34.1
Q ss_pred HHhhcCcCCC-CCCHHHHHHHHhhcccceeccCCeEEecCCccCeEE---EEeccEEEEEe
Q 042824 29 PYIEKVSLFK-GCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLY---FVCHGVLEEVG 85 (94)
Q Consensus 29 ~~l~~~~~f~-~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y---~i~~G~v~v~~ 85 (94)
..|...+||- .++....+.++.. -..|.+++|..+...+.| +...|.+.=+.
T Consensus 29 ~~l~~~~WyhG~isR~eAe~lL~~-----~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~r 84 (152)
T 2hmh_A 29 RKLQESGFYWSAVTGGEANLLLSA-----EPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLR 84 (152)
T ss_dssp HHHHHTSSEETTCCHHHHHHHHHT-----SCTTEEEEEECCSTTCSEEEEEEETTEEEEEE
T ss_pred hhhccCCCcCCCCCHHHHHHHhcC-----CCCCcEEEEeCCCCCCcEEEEEEcCCceEEEE
Confidence 3456778776 6888888887753 367999999887543333 33455555443
No 130
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=27.52 E-value=1.2e+02 Score=20.93 Aligned_cols=38 Identities=8% Similarity=-0.100 Sum_probs=28.3
Q ss_pred cccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCC
Q 042824 52 LHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGED 89 (94)
Q Consensus 52 ~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~ 89 (94)
+....+.+|-++.-.-.....+++|+.|+..+-...++
T Consensus 47 ~~r~~i~pggl~~Ph~~~~~~i~yV~~G~g~vg~v~pg 84 (493)
T 2d5f_A 47 VSKRTLNRNGLHLPSYSPYPQMIIVVQGKGAIGFAFPG 84 (493)
T ss_dssp EEEEEECTTEEEEEEECSSCEEEEEEECEEEEEECCTT
T ss_pred EEEEEeCCCcEeCceecCCCeEEEEEeCEEEEEEEeCC
Confidence 44567889888755444567899999999988876554
No 131
>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2 subdomain, PEST motif, protein complex, cytokine regulator; HET: PTR; NMR {Mus musculus}
Probab=27.51 E-value=93 Score=17.87 Aligned_cols=40 Identities=5% Similarity=0.197 Sum_probs=28.2
Q ss_pred HhhcCcCCC-CCCHHHHHHHHhhcccceeccCCeEEecCCccCeEE
Q 042824 30 YIEKVSLFK-GCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLY 74 (94)
Q Consensus 30 ~l~~~~~f~-~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y 74 (94)
.+...+||- .++....+.++.. -..|.+++|..+...+.|
T Consensus 19 ~L~~~~WyhG~IsR~eAe~lL~~-----~~~GtFLVR~S~s~~g~y 59 (164)
T 2bbu_A 19 KLQESGFYWSAVTGGEANLLLSA-----EPAGTFLIRDSSDQRHFF 59 (164)
T ss_dssp HHHHTSCCCTTSCHHHHHHHHHH-----SSTTCCEEEECSTTSCCE
T ss_pred hhccCCccCCCCCHHHHHHHhcC-----CCCCCEEEEECCCCCCCE
Confidence 456778776 6888888887654 467999998876544433
No 132
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=27.33 E-value=46 Score=18.79 Aligned_cols=31 Identities=23% Similarity=0.179 Sum_probs=19.6
Q ss_pred ceeccCCeE--EecCCccCeEEEEeccEEEEEe
Q 042824 55 EFFLPGEVI--MEQGNVVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 55 ~~~~~ge~i--~~~g~~~~~~y~i~~G~v~v~~ 85 (94)
..+.+|... .......+.+++|++|.+.+..
T Consensus 48 ~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~ 80 (163)
T 3i7d_A 48 VRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVD 80 (163)
T ss_dssp EEECTTCBSSSSEEESSCCEEEEEEESCEEEEE
T ss_pred EEECCCCcCCCCccCCCCcEEEEEEECEEEEEE
Confidence 445566533 2222223689999999998876
No 133
>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}
Probab=27.14 E-value=77 Score=16.82 Aligned_cols=50 Identities=6% Similarity=0.082 Sum_probs=30.1
Q ss_pred hcCcCCC-CCCHHHHHHHHhhcccceeccCCeEEecCCccCe---EEEEeccEEEEEe
Q 042824 32 EKVSLFK-GCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQ---LYFVCHGVLEEVG 85 (94)
Q Consensus 32 ~~~~~f~-~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~---~y~i~~G~v~v~~ 85 (94)
...+||- .++....+.++... -..|.+++|..+...+ +-+...|.+.=+.
T Consensus 8 ~~~~WyhG~isR~eAe~lL~~~----~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~ 61 (119)
T 2ysx_A 8 MVPCWNHGNITRSKAEELLSRT----GKDGSFLVRASESISRAYALCVLYRNCVYTYR 61 (119)
T ss_dssp CCCSSEEESCCHHHHHHHHHHH----CCTTEEEEEECSSCTTSEEEEEECSSCEEEEE
T ss_pred CCCccccCCCCHHHHHHHHhhc----CCCCEEEEEeCCCCCCCEEEEEEECCEEEEEE
Confidence 4456665 68888888777542 1679999988765332 3333345554443
No 134
>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1, solution structure, cell junctio membrane, hydrolase, membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A
Probab=27.07 E-value=83 Score=17.16 Aligned_cols=34 Identities=12% Similarity=0.170 Sum_probs=24.0
Q ss_pred CcCCC-CCCHHHHHHHHhhcccceeccCCeEEecCCccCe
Q 042824 34 VSLFK-GCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQ 72 (94)
Q Consensus 34 ~~~f~-~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~ 72 (94)
.+||- .++....+.++.. -..|.+++|..+...+
T Consensus 20 ~~Wyhg~isR~eAe~lL~~-----~~~G~FLVR~S~s~~g 54 (131)
T 2kno_A 20 KFWYKPHLSRDQAIALLKD-----KDPGAFLIRDSHSFQG 54 (131)
T ss_dssp HHHBCTTCCHHHHHHHHTT-----SCTTBEEEEECSSSTT
T ss_pred CCceecCCCHHHHHHHhcC-----CCCCeEEEecCCCCCC
Confidence 35554 6888888887753 2689999998865443
No 135
>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain, feline sarcoma oncogene, structural genomics; NMR {Homo sapiens} PDB: 2dcr_A
Probab=27.05 E-value=47 Score=17.65 Aligned_cols=48 Identities=6% Similarity=0.207 Sum_probs=31.1
Q ss_pred hhcCcCCC-CCCHHHHHHHHhhcccceeccCCeEEecCCccCe--EEEEeccEEEEEe
Q 042824 31 IEKVSLFK-GCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQ--LYFVCHGVLEEVG 85 (94)
Q Consensus 31 l~~~~~f~-~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~--~y~i~~G~v~v~~ 85 (94)
+...+||- .++....+.++. ..|.+++|..+.... +-+...|.+.=+.
T Consensus 13 l~~~~WyhG~isR~eAe~lL~-------~~G~FLVR~S~~~~~y~LSv~~~~~v~H~~ 63 (114)
T 1wqu_A 13 LHEQLWYHGAIPRAEVAELLV-------HSGDFLVRESQGKQEYVLSVLWDGLPRHFI 63 (114)
T ss_dssp GGGCTTEEESCCHHHHHTTCC-------STTEEEEEECSSSCCEEEEEEETTEEEEEE
T ss_pred cccCCcEeeCCCHHHHHHHhc-------cCCeEEEEEcCCCCCEEEEEEECCEEEEEE
Confidence 55677776 688777777664 379999999876542 2233456655544
No 136
>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A*
Probab=26.89 E-value=86 Score=17.27 Aligned_cols=49 Identities=6% Similarity=-0.007 Sum_probs=32.5
Q ss_pred hcCcCCC-CCCHHHHHHHHhhcccceeccCCeEEecCCccCe---EEEEeccEEEEEe
Q 042824 32 EKVSLFK-GCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQ---LYFVCHGVLEEVG 85 (94)
Q Consensus 32 ~~~~~f~-~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~---~y~i~~G~v~v~~ 85 (94)
...++|- .++....+.++.. -..|.+++|..+...+ +-+...|.+.=+.
T Consensus 24 ~~~~WyhG~isR~eAe~lL~~-----~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~ 76 (138)
T 2crh_A 24 SVHLWYAGPMERAGAESILAN-----RSDGTFLVRQRVKDAAEFAISIKYNVEVKHIK 76 (138)
T ss_dssp GGSSSBCCSCCHHHHHHHTTT-----SCTTEEEEECCSSTTCCCEEEEEETTEEEEEE
T ss_pred CcCCcccCCCCHHHHHHHhcC-----CCCCEEEEEECCCCCCCEEEEEEECCeEEEEE
Confidence 5567666 6888888887764 2679999998865322 4444566665543
No 137
>3tvk_A DGC, diguanylate cyclase YDEH; putative zinc sensor, C-DI-GMP, transfe; HET: C2E; 1.80A {Escherichia coli}
Probab=26.82 E-value=88 Score=18.01 Aligned_cols=35 Identities=11% Similarity=0.218 Sum_probs=25.8
Q ss_pred HHHHHHHHhhcccceeccCCeEEecCCccCeEEEEecc
Q 042824 42 SEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHG 79 (94)
Q Consensus 42 ~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G 79 (94)
+..+..++..++. .+.+++++.|-| ++.|.+++.+
T Consensus 57 D~vL~~va~~L~~-~~~~~~~v~R~g--GDEF~ill~~ 91 (179)
T 3tvk_A 57 DVVLRTLATYLAS-WTRDYETVYRYG--GEEFIIIVKA 91 (179)
T ss_dssp HHHHHHHHHHHHH-TSCTTSCEEECS--SSEEEEEEEE
T ss_pred HHHHHHHHHHhHh-cCCcccEEEEcc--CCEEEEEcCC
Confidence 4567778877764 567888999987 5778777654
No 138
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=26.50 E-value=39 Score=22.51 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=19.7
Q ss_pred eeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824 56 FFLPGEVIMEQGNVVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 56 ~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~ 85 (94)
.+.+|...-..-.....+|+|++|...+..
T Consensus 300 ~l~PG~~~~~HrH~~~~v~~VleG~G~~~V 329 (394)
T 3bu7_A 300 MLRPGEHTKAHRHTGNVIYNVAKGQGYSIV 329 (394)
T ss_dssp EECTTCBCCCEEESSCEEEEEEECCEEEEE
T ss_pred EECCCCcCCCcccCCcEEEEEEeCeEEEEE
Confidence 445555544444446679999999986554
No 139
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=26.08 E-value=77 Score=16.53 Aligned_cols=30 Identities=13% Similarity=0.076 Sum_probs=18.0
Q ss_pred eeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824 56 FFLPGEVIMEQGNVVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 56 ~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~ 85 (94)
.+.+|...-..-.....+++|++|.+.+..
T Consensus 40 ~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i 69 (128)
T 4i4a_A 40 IVRPETKSFRHSHNEYELFIVIQGNAIIRI 69 (128)
T ss_dssp EECTTEECCCBCCSSEEEEEEEESEEEEEE
T ss_pred EECCCCccCCEecCCeEEEEEEeCEEEEEE
Confidence 344544332222345568889999988776
No 140
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=25.87 E-value=1.4e+02 Score=20.92 Aligned_cols=47 Identities=15% Similarity=0.229 Sum_probs=32.1
Q ss_pred HHHHHhhcccceeccCCeEEec-CCccCeEEEEeccEEEEEeeCCCCC
Q 042824 45 INQIVTRLHEEFFLPGEVIMEQ-GNVVDQLYFVCHGVLEEVGVGEDGS 91 (94)
Q Consensus 45 ~~~l~~~~~~~~~~~ge~i~~~-g~~~~~~y~i~~G~v~v~~~~~~g~ 91 (94)
+..+--.+....+.+|-++--. ...++.+.+|++|.+.+...+++|.
T Consensus 389 L~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~ 436 (531)
T 3fz3_A 389 LRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGD 436 (531)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSC
T ss_pred cccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCc
Confidence 4444334455678888765432 2336789999999999998887764
No 141
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=25.80 E-value=84 Score=16.81 Aligned_cols=31 Identities=13% Similarity=0.081 Sum_probs=20.6
Q ss_pred ceeccCCeEEecCCc-cCeEEEEeccEEEEEe
Q 042824 55 EFFLPGEVIMEQGNV-VDQLYFVCHGVLEEVG 85 (94)
Q Consensus 55 ~~~~~ge~i~~~g~~-~~~~y~i~~G~v~v~~ 85 (94)
..+.+|..+-..-.. ...+++|++|.+.+..
T Consensus 62 ~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i 93 (133)
T 1o4t_A 62 MKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD 93 (133)
T ss_dssp EEECTTCEEEEEECCSEEEEEEEEESEEEEEE
T ss_pred EEECCCCccCceECCCccEEEEEEeCEEEEEE
Confidence 456777654332222 3579999999998875
No 142
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=25.68 E-value=89 Score=17.04 Aligned_cols=31 Identities=23% Similarity=-0.070 Sum_probs=19.6
Q ss_pred eeccCCeEEec-CCccCeEEEEeccEEEEEee
Q 042824 56 FFLPGEVIMEQ-GNVVDQLYFVCHGVLEEVGV 86 (94)
Q Consensus 56 ~~~~ge~i~~~-g~~~~~~y~i~~G~v~v~~~ 86 (94)
.+.+|..+-.. -.....+++|++|.+.+...
T Consensus 49 ~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~ 80 (148)
T 2oa2_A 49 SIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMG 80 (148)
T ss_dssp EECTTCBCCCBCCTTCEEEEEEEESEEEEEEE
T ss_pred EECCCCccCceECCCCcEEEEEEeCEEEEEEC
Confidence 45565543222 22244789999999998864
No 143
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=25.56 E-value=56 Score=18.73 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=14.1
Q ss_pred ccCeEEEEeccEEEEEe
Q 042824 69 VVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 69 ~~~~~y~i~~G~v~v~~ 85 (94)
.+..+++|++|.+.+..
T Consensus 139 ~~~E~~~Vl~G~~~~~~ 155 (198)
T 2bnm_A 139 AGNEFLFVLEGEIHMKW 155 (198)
T ss_dssp SSCEEEEEEESCEEEEE
T ss_pred CCeEEEEEEeeeEEEEE
Confidence 34678999999999886
No 144
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1
Probab=25.50 E-value=76 Score=16.22 Aligned_cols=48 Identities=6% Similarity=0.114 Sum_probs=28.3
Q ss_pred CcCCC-CCCHHHHHHHHhhcccceeccCCeEEecCCccCe---EEEEeccEEEEEe
Q 042824 34 VSLFK-GCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQ---LYFVCHGVLEEVG 85 (94)
Q Consensus 34 ~~~f~-~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~---~y~i~~G~v~v~~ 85 (94)
.|+|- .++....+.++..- . ..|.+++|..+...+ +-+...|.+.=+.
T Consensus 3 ~~Wyhg~isR~~Ae~lL~~~---~-~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~ 54 (103)
T 1i3z_A 3 LPYYHGCLTKRECEALLLKG---G-VDGNFLIRDSESVPGALCLCVSFKKLVYSYR 54 (103)
T ss_dssp CTTEESSCCHHHHHHHHHTT---C-STTEEEEEECSSSTTCEEEEEECSSSEEEEE
T ss_pred CccccCCCCHHHHHHHHhhc---C-CCceEEEEeCCCCCCCEEEEEEECCEEEEEE
Confidence 45554 68888888777542 1 679999998754332 2233345554443
No 145
>3vi8_A Peroxisome proliferator-activated receptor alpha; nuclear receptor, protein-ligand complex, PPAR, transcriptio; HET: 13M; 1.75A {Homo sapiens} PDB: 2znn_A* 3et1_A* 3kdu_A* 3kdt_A* 2rew_A* 1i7g_A* 3g8i_A* 1kkq_A* 1k7l_A* 3sp6_A* 2npa_A* 2p54_A* 3fei_A* 3tkm_A* 2znq_A* 2znp_A* 3sp9_A* 3gwx_A* 3dy6_A* 1gwx_A* ...
Probab=25.36 E-value=1.3e+02 Score=18.69 Aligned_cols=26 Identities=4% Similarity=-0.005 Sum_probs=20.1
Q ss_pred HhHHHhhcCcCCCCCCHHHHHHHHhh
Q 042824 26 LYMPYIEKVSLFKGCSSEFINQIVTR 51 (94)
Q Consensus 26 ~~~~~l~~~~~f~~l~~~~~~~l~~~ 51 (94)
...++.+++|.|..++.+....|+..
T Consensus 91 ~iVewAK~iPgF~~L~~~DQi~LLk~ 116 (273)
T 3vi8_A 91 ELTEFAKAIPGFANLDLNDQVTLLKY 116 (273)
T ss_dssp HHHHHGGGSTTTTTSCHHHHHHHHHH
T ss_pred HHHHHHccCcCcccCCHHHHHHHHHH
Confidence 34578889999999998776666554
No 146
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=25.15 E-value=64 Score=16.83 Aligned_cols=18 Identities=17% Similarity=0.077 Sum_probs=14.8
Q ss_pred CccCeEEEEeccEEEEEe
Q 042824 68 NVVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 68 ~~~~~~y~i~~G~v~v~~ 85 (94)
.....+++|++|.+.+..
T Consensus 51 ~~~~E~~~Vl~G~~~l~~ 68 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIEC 68 (112)
T ss_dssp CSSEEEEEEEESCEEEEE
T ss_pred CCccEEEEEEeCeEEEEE
Confidence 345679999999999886
No 147
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=25.03 E-value=54 Score=19.03 Aligned_cols=18 Identities=17% Similarity=0.137 Sum_probs=14.9
Q ss_pred CccCeEEEEeccEEEEEe
Q 042824 68 NVVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 68 ~~~~~~y~i~~G~v~v~~ 85 (94)
..+..+++|++|.+.+..
T Consensus 108 h~gEE~~yVLeG~v~vtl 125 (166)
T 2vpv_A 108 FRTYITFHVIQGIVEVTV 125 (166)
T ss_dssp CSEEEEEEEEESEEEEEE
T ss_pred CCceEEEEEEEeEEEEEE
Confidence 345679999999999986
No 148
>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}
Probab=24.82 E-value=38 Score=19.37 Aligned_cols=32 Identities=6% Similarity=-0.005 Sum_probs=24.5
Q ss_pred cccceeccCCeEEecCCccCeEEEEeccEEEE
Q 042824 52 LHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEE 83 (94)
Q Consensus 52 ~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v 83 (94)
+....+++|..+-.....+....+|++|....
T Consensus 44 v~lvr~~pG~~~p~H~H~g~ee~~VL~G~~~~ 75 (159)
T 3ebr_A 44 ITLLKAPAGMEMPRHHHTGTVIVYTVQGSWRY 75 (159)
T ss_dssp EEEEEECSSCBCCCEEESSCEEEEEEESCEEE
T ss_pred EEEEEECCCCCcccccCCCCEEEEEEEeEEEE
Confidence 34467888888777767677888999999774
No 149
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=24.61 E-value=75 Score=17.35 Aligned_cols=29 Identities=14% Similarity=-0.040 Sum_probs=20.0
Q ss_pred ceeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824 55 EFFLPGEVIMEQGNVVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 55 ~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~ 85 (94)
..+.+|..-... ..+.+++|++|.+.+..
T Consensus 62 ~~~~pG~~~~h~--~~~E~~~VLeG~~~l~~ 90 (133)
T 2pyt_A 62 MQWDNAFFPWTL--NYDEIDMVLEGELHVRH 90 (133)
T ss_dssp EEEEEEEEEEEC--SSEEEEEEEEEEEEEEE
T ss_pred EEECCCCccccC--CCCEEEEEEECEEEEEE
Confidence 456777432222 36789999999999886
No 150
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=24.56 E-value=1e+02 Score=17.48 Aligned_cols=16 Identities=19% Similarity=0.200 Sum_probs=13.3
Q ss_pred cCeEEEEeccEEEEEe
Q 042824 70 VDQLYFVCHGVLEEVG 85 (94)
Q Consensus 70 ~~~~y~i~~G~v~v~~ 85 (94)
...+++|++|.+.+..
T Consensus 126 ~~E~~~Vl~G~~~~~~ 141 (192)
T 1y9q_A 126 VIEYIHVLEGIMKVFF 141 (192)
T ss_dssp CEEEEEEEESCEEEEE
T ss_pred CEEEEEEEEeEEEEEE
Confidence 4579999999998875
No 151
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=24.41 E-value=74 Score=16.63 Aligned_cols=31 Identities=10% Similarity=0.064 Sum_probs=17.4
Q ss_pred ceeccCCeE--EecCCccCeEEEEeccEEEEEe
Q 042824 55 EFFLPGEVI--MEQGNVVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 55 ~~~~~ge~i--~~~g~~~~~~y~i~~G~v~v~~ 85 (94)
..+.+|..+ ...-+....+|+|++|.+.+..
T Consensus 31 ~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i 63 (125)
T 3cew_A 31 NHLPAGAGVPFVHSHKQNEEIYGILSGKGFITI 63 (125)
T ss_dssp EEECTTCBCSSEEEESSEEEEEEEEEEEEEEEE
T ss_pred EEECCCCCCCCCccCCCceEEEEEEeCEEEEEE
Confidence 345555543 1222223446669999988765
No 152
>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.22 E-value=86 Score=16.40 Aligned_cols=49 Identities=6% Similarity=0.002 Sum_probs=31.0
Q ss_pred cCcCCC-CCCHHHHHHHHhhcccceeccCCeEEecCCccCe---EEEEeccEEEEEee
Q 042824 33 KVSLFK-GCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQ---LYFVCHGVLEEVGV 86 (94)
Q Consensus 33 ~~~~f~-~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~---~y~i~~G~v~v~~~ 86 (94)
..+||- .++....+.++. .-..|.+++|..+...+ +-+...|.+.=+..
T Consensus 18 ~~~Wyhg~isR~~Ae~lL~-----~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I 70 (111)
T 2eo3_A 18 RSAWYMGPVSRQEAQTRLQ-----GQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYII 70 (111)
T ss_dssp HHHHEEESCCHHHHHHHHS-----SCCTTCEEEEECSSSSSCEEEEEEETTEEEEEEE
T ss_pred CCCcccCCCCHHHHHHHhc-----CCCCceEEEEeecCCCCCEEEEEEeCCeEEEEEE
Confidence 345554 688888887774 24789999998865332 33444566555443
No 153
>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET: PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A* 1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L* 1cwe_A*
Probab=23.95 E-value=83 Score=16.10 Aligned_cols=35 Identities=11% Similarity=0.034 Sum_probs=23.7
Q ss_pred hcCcCCC-CCCHHHHHHHHhhcccceeccCCeEEecCCc
Q 042824 32 EKVSLFK-GCSSEFINQIVTRLHEEFFLPGEVIMEQGNV 69 (94)
Q Consensus 32 ~~~~~f~-~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~ 69 (94)
...+||- .++....+.++..- .-..|.+++|..+.
T Consensus 2 ~~~~Wyhg~isR~~Ae~lL~~~---~~~~G~FLVR~S~~ 37 (105)
T 1lkk_A 2 EPEPWFFKNLSRKDAERQLLAP---GNTHGSFLIRESES 37 (105)
T ss_dssp CCCTTBCTTCCHHHHHHHHTST---TCCTTCEEEEECSS
T ss_pred CcCceecCCCCHHHHHHHHHhc---CCCCceEEEEECCC
Confidence 3456665 58877777766431 24689999998864
No 154
>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.70 E-value=93 Score=16.57 Aligned_cols=36 Identities=8% Similarity=0.041 Sum_probs=25.1
Q ss_pred hhcCcCCC-CCCHHHHHHHHhhcccceeccCCeEEecCCcc
Q 042824 31 IEKVSLFK-GCSSEFINQIVTRLHEEFFLPGEVIMEQGNVV 70 (94)
Q Consensus 31 l~~~~~f~-~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~ 70 (94)
+...+||- .++....+.++..-. ..|.+++|..+..
T Consensus 13 l~~~~WyhG~isR~~Ae~lL~~~g----~~G~FLVR~S~~~ 49 (119)
T 2gsb_A 13 HEGKIWFHGKISKQEAYNLLMTVG----QVCSFLVRPSDNT 49 (119)
T ss_dssp GGGCSSBCCSSCHHHHHHHHHHTC----CSSEEEEEECSSS
T ss_pred cccCCcccCCCCHHHHHHHHhhcC----CCCeEEEEeCCCC
Confidence 45677776 688888888776532 3588888887653
No 155
>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein binding/transferase complex; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1
Probab=23.15 E-value=90 Score=16.23 Aligned_cols=44 Identities=5% Similarity=-0.077 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHhhcccceeccCCeEEecCCccCeE---EEEeccEEEEEee
Q 042824 38 KGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQL---YFVCHGVLEEVGV 86 (94)
Q Consensus 38 ~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~---y~i~~G~v~v~~~ 86 (94)
..++....+.++.. -+.|.+++|..+...+- -+...|.+.=+..
T Consensus 5 g~isr~~Ae~lL~~-----~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I 51 (109)
T 1ju5_A 5 GRLSRQEAVALLQG-----QRHGVFLVRDSSTSPGDYVLSVSENSRVSHYII 51 (109)
T ss_dssp TTCCHHHHHHHHTT-----CCTTEEEEEECSSSTTEEEEEEECSSCEEEEEE
T ss_pred cCCCHHHHHHHhcC-----CCCCEEEEEecCCCCCCEEEEEEECCeEEEEEE
Confidence 35777777777642 46899999988654332 2333455554443
No 156
>3aqe_A Receptor activity-modifying protein 2; transmembrane, GPCR, adrenomedullin, trafficking, CLR, CGRP, endoplasmic reticulum, disease; 2.00A {Homo sapiens} PDB: 3aqf_A 2xvt_A
Probab=23.12 E-value=56 Score=17.15 Aligned_cols=25 Identities=16% Similarity=0.137 Sum_probs=20.6
Q ss_pred hCcHHHHHHHHHHHhHHHhhcCcCC
Q 042824 13 DIPVSIRAKISQTLYMPYIEKVSLF 37 (94)
Q Consensus 13 ~lp~~l~~~~~~~~~~~~l~~~~~f 37 (94)
.+|.++-+.+...++..+..++++-
T Consensus 62 ~wPNplve~ff~~iH~~yF~NCs~~ 86 (91)
T 3aqe_A 62 GFPNPLAERIIFETHQIHFANCSLV 86 (91)
T ss_dssp CSSCHHHHHHHHHHHHHTTTTCCSC
T ss_pred CCCcHHHHHHHHHHHHHHhcCCCCC
Confidence 5899999999999888888877754
No 157
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=22.63 E-value=1e+02 Score=17.85 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=15.8
Q ss_pred CeEEEEeccEEEEEeeCCCC
Q 042824 71 DQLYFVCHGVLEEVGVGEDG 90 (94)
Q Consensus 71 ~~~y~i~~G~v~v~~~~~~g 90 (94)
..+++|++|++.+...+..|
T Consensus 97 ~E~~~Vl~G~~~~~i~~~~g 116 (190)
T 1x82_A 97 AEVYVALKGKGGMLLQTPEG 116 (190)
T ss_dssp CEEEEEEESCEEEEEECTTC
T ss_pred CEEEEEEcCEEEEEEcCcCC
Confidence 58999999999998754433
No 158
>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation, binding specificity; HET: PTR MPD; 1.45A {Homo sapiens} PDB: 1z3k_A 2ci9_A* 2ci8_A*
Probab=22.24 E-value=92 Score=15.98 Aligned_cols=34 Identities=3% Similarity=0.125 Sum_probs=22.7
Q ss_pred cCcCCC-CCCHHHHHHHHhhcccceeccCCeEEecCCcc
Q 042824 33 KVSLFK-GCSSEFINQIVTRLHEEFFLPGEVIMEQGNVV 70 (94)
Q Consensus 33 ~~~~f~-~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~ 70 (94)
+.++|- .++....+.++..-. ..|.+++|..+..
T Consensus 4 ~~~Wyhg~isR~~Ae~lL~~~~----~~G~FLVR~S~~~ 38 (102)
T 2cia_A 4 GSEWYYGNVTRHQAECALNERG----VEGDFLIRDSESS 38 (102)
T ss_dssp -CTTBCCSCCHHHHHHHHHHHC----CTTEEEEEECSSS
T ss_pred CCccccCCCCHHHHHHHHhhCC----CCcEEEEEECCCC
Confidence 456665 588888887764321 5789999887653
No 159
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet, transcription regula; 2.60A {Homo sapiens}
Probab=22.09 E-value=1.4e+02 Score=18.07 Aligned_cols=26 Identities=8% Similarity=0.097 Sum_probs=20.0
Q ss_pred hHHHhhcCcCCCCCCHHHHHHHHhhc
Q 042824 27 YMPYIEKVSLFKGCSSEFINQIVTRL 52 (94)
Q Consensus 27 ~~~~l~~~~~f~~l~~~~~~~l~~~~ 52 (94)
..+..+++|.|..++.+....++...
T Consensus 81 ~VewAK~lP~F~~L~~~DQ~~LLk~~ 106 (245)
T 3n00_A 81 VVEFAKHIPGFRDLSQHDQVTLLKAG 106 (245)
T ss_dssp HHHHHHHSTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHcCCChhhCCHHHHHHHHHHH
Confidence 34678899999999988777765543
No 160
>3fcg_A F1 capsule-anchoring protein; beta barrel, beta strand swapping, cell membrane, cell outer membrane, cell projection, fimbrium, membrane; 2.85A {Yersinia pestis}
Probab=21.51 E-value=46 Score=17.35 Aligned_cols=17 Identities=24% Similarity=0.345 Sum_probs=14.4
Q ss_pred eccEEEEEeeCCCCCcC
Q 042824 77 CHGVLEEVGVGEDGSEE 93 (94)
Q Consensus 77 ~~G~v~v~~~~~~g~e~ 93 (94)
-+|.+.|...+.+|+++
T Consensus 58 ~~Gdl~V~v~eadG~~~ 74 (90)
T 3fcg_A 58 GSGELKVIIHESDGTKQ 74 (90)
T ss_dssp CCEEEEEEEECTTSCEE
T ss_pred CceeEEEEEEECCCCEE
Confidence 57899999999999875
No 161
>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*
Probab=21.31 E-value=76 Score=17.82 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=17.4
Q ss_pred CccCeEEEEeccEEEEEeeCCCCCc
Q 042824 68 NVVDQLYFVCHGVLEEVGVGEDGSE 92 (94)
Q Consensus 68 ~~~~~~y~i~~G~v~v~~~~~~g~e 92 (94)
.....++++++|++++... ||++
T Consensus 54 k~~~q~li~l~Gs~~v~ld--Dg~~ 76 (141)
T 2pa7_A 54 KKLEQVLVCLNGSCRVILD--DGNI 76 (141)
T ss_dssp SSCCEEEEEEESCEEEEEE--CSSC
T ss_pred CCceEEEEEEccEEEEEEE--CCcE
Confidence 3456799999999999983 4543
No 162
>3gyt_A Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily; nuclear receptor, ligand binding domain, dafachronic acid, nematode, DNA-binding, metal-binding, nucleus, receptor; HET: DL4; 2.40A {Strongyloides stercoralis} PDB: 3gyu_A*
Probab=20.78 E-value=1.4e+02 Score=18.20 Aligned_cols=25 Identities=8% Similarity=0.092 Sum_probs=19.3
Q ss_pred hHHHhhcCcCCCCCCHHHHHHHHhh
Q 042824 27 YMPYIEKVSLFKGCSSEFINQIVTR 51 (94)
Q Consensus 27 ~~~~l~~~~~f~~l~~~~~~~l~~~ 51 (94)
..++.+++|.|..++.+....++..
T Consensus 57 iVefAK~iPgF~~L~~~DQi~LLK~ 81 (244)
T 3gyt_A 57 LVKMAKRLGAFNEISEAGKFSLLKG 81 (244)
T ss_dssp HHHHHHTCGGGGGSCHHHHHHHHHH
T ss_pred HHHHHccCCCcccCCHHHHHHHHHH
Confidence 3577889999999998776665543
No 163
>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2; SH2, phosphoinositide phospholipase C, PLC-gamma-2, phospholipase C-gamma-2; NMR {Rattus norvegicus}
Probab=20.66 E-value=1.1e+02 Score=16.37 Aligned_cols=52 Identities=13% Similarity=0.230 Sum_probs=32.4
Q ss_pred hhcCcCCC-CCCHHHHHHHHhhcccceeccCCeEEecCCccCe--EEEEeccEEEEEee
Q 042824 31 IEKVSLFK-GCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQ--LYFVCHGVLEEVGV 86 (94)
Q Consensus 31 l~~~~~f~-~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~--~y~i~~G~v~v~~~ 86 (94)
+...+||- .++....+.++..- -..|.+++|..+.... +-+...|.+.=+..
T Consensus 16 l~~~~WyhG~isR~eAe~lL~~~----~~~G~FLVR~S~~~g~y~LSv~~~~~v~H~~I 70 (124)
T 2eob_A 16 HESKPWYYDRLSRGEAEDMLMRI----PRDGAFLIRKREGTDSYAITFRARGKVKHCRI 70 (124)
T ss_dssp TTTSTTEESSCCHHHHHHHHHHC----CSSSEEEEECCTTSSCEEEEEEETTEEEEEEE
T ss_pred cCcCCCeecCCCHHHHHHHHhcC----CCCCEEEEEecCCCCCEEEEEEeCCeEEEEEE
Confidence 45567765 68888888877643 2579999998872222 33334566555543
No 164
>3i5c_A Fusion of general control protein GCN4 and WSPR R regulator protein; C-DI-GMP, ggdef, leucine zipper, signaling protein; HET: C2E; 1.94A {Pseudomonas aeruginosa PAO1} PDB: 3i5b_A*
Probab=20.64 E-value=1.3e+02 Score=16.97 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=23.1
Q ss_pred HHHHHHHHhhcccceeccCCeEEecCCccCeEEEEecc
Q 042824 42 SEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHG 79 (94)
Q Consensus 42 ~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G 79 (94)
+..+..++..++.....+++++.+-| ++.|.++..+
T Consensus 85 d~~L~~ia~~L~~~~~~~~~~~~R~~--~d~F~il~~~ 120 (206)
T 3i5c_A 85 DEALRQVAGAIREGCSRSSDLAARYG--GEEFAMVLPG 120 (206)
T ss_dssp HHHHHHHHHHHHTTCCSTTCEEEEEE--TTEEEEEEET
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEec--CCeEEEEECC
Confidence 34566666666544446778888876 4667776654
No 165
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=20.42 E-value=1.1e+02 Score=18.74 Aligned_cols=31 Identities=16% Similarity=0.026 Sum_probs=21.3
Q ss_pred ceeccCCeEEe-cCCccCeEEEEeccEEEEEe
Q 042824 55 EFFLPGEVIME-QGNVVDQLYFVCHGVLEEVG 85 (94)
Q Consensus 55 ~~~~~ge~i~~-~g~~~~~~y~i~~G~v~v~~ 85 (94)
..+.+|..+-. .-.....+++|++|.+.+..
T Consensus 187 ~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i 218 (274)
T 1sef_A 187 LSFEPGASHAYIETHVQEHGAYLISGQGMYNL 218 (274)
T ss_dssp EEECTTCBCSSCBCCSCCEEEEEEECEEEEEE
T ss_pred EEECCCCccCcceeccCeEEEEEEeCEEEEEE
Confidence 45677765533 23345678999999998876
No 166
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=20.02 E-value=85 Score=14.77 Aligned_cols=20 Identities=15% Similarity=0.114 Sum_probs=16.4
Q ss_pred CcCCCCCCHHHHHHHHhhcc
Q 042824 34 VSLFKGCSSEFINQIVTRLH 53 (94)
Q Consensus 34 ~~~f~~l~~~~~~~l~~~~~ 53 (94)
+|-|..+++..+..|+..+.
T Consensus 57 Mp~~~~Ls~~ei~~l~~yl~ 76 (79)
T 2d0s_A 57 MPPHPQVAEADIEKIVRWVL 76 (79)
T ss_dssp BCCCTTSCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 67777899999999987664
Done!