Query 042826
Match_columns 146
No_of_seqs 126 out of 1258
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 09:54:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042826.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042826hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02395 glutathione S-transfe 100.0 5.9E-27 1.3E-31 153.9 15.3 146 1-146 66-211 (215)
2 PLN02473 glutathione S-transfe 99.9 2.3E-26 5.1E-31 150.9 16.0 145 1-145 67-211 (214)
3 PRK09481 sspA stringent starva 99.9 8.2E-24 1.8E-28 138.6 13.1 130 1-144 72-201 (211)
4 PRK13972 GSH-dependent disulfi 99.9 7.4E-24 1.6E-28 139.2 11.8 134 1-145 72-205 (215)
5 PRK10542 glutathionine S-trans 99.9 1.3E-23 2.9E-28 136.7 12.4 131 1-144 66-196 (201)
6 PRK11752 putative S-transferas 99.9 9.9E-23 2.1E-27 137.4 14.3 136 1-144 118-257 (264)
7 TIGR01262 maiA maleylacetoacet 99.9 1.9E-22 4.1E-27 132.1 14.0 138 1-145 65-204 (210)
8 COG0625 Gst Glutathione S-tran 99.9 8.4E-22 1.8E-26 129.1 13.8 132 1-140 65-199 (211)
9 PRK10357 putative glutathione 99.9 8.2E-22 1.8E-26 128.3 12.9 136 1-143 63-198 (202)
10 KOG0406 Glutathione S-transfer 99.9 6.5E-22 1.4E-26 128.1 11.1 132 1-143 72-209 (231)
11 PRK15113 glutathione S-transfe 99.9 1.1E-21 2.4E-26 128.8 10.6 135 1-145 72-208 (214)
12 cd03187 GST_C_Phi GST_C family 99.9 4.5E-21 9.8E-26 114.8 11.7 117 26-143 2-118 (118)
13 KOG0867 Glutathione S-transfer 99.9 8.2E-21 1.8E-25 125.3 11.0 140 1-144 67-208 (226)
14 cd03196 GST_C_5 GST_C family, 99.9 6.8E-21 1.5E-25 113.5 8.7 114 22-143 2-115 (115)
15 cd03188 GST_C_Beta GST_C famil 99.8 1.3E-20 2.8E-25 112.2 8.5 113 26-143 2-114 (114)
16 cd03178 GST_C_Ure2p_like GST_C 99.8 4.2E-20 9E-25 109.9 10.0 113 26-144 1-113 (113)
17 PTZ00057 glutathione s-transfe 99.8 1.4E-19 3.1E-24 118.1 11.6 125 1-145 72-199 (205)
18 cd03189 GST_C_GTT1_like GST_C 99.8 2.1E-19 4.6E-24 107.7 10.1 114 21-137 2-119 (119)
19 cd03183 GST_C_Theta GST_C fami 99.8 3.7E-19 8E-24 107.7 10.9 117 27-145 2-122 (126)
20 cd03186 GST_C_SspA GST_N famil 99.8 3.4E-19 7.5E-24 105.0 10.2 106 24-142 1-106 (107)
21 cd03180 GST_C_2 GST_C family, 99.8 4.6E-19 9.9E-24 104.8 10.7 109 26-139 2-110 (110)
22 cd03181 GST_C_EFB1gamma GST_C 99.8 5.5E-19 1.2E-23 106.5 10.6 116 26-145 1-116 (123)
23 KOG1695 Glutathione S-transfer 99.8 8.4E-19 1.8E-23 112.8 11.9 133 1-145 65-200 (206)
24 cd03191 GST_C_Zeta GST_C famil 99.8 7E-19 1.5E-23 105.8 10.6 116 24-144 1-118 (121)
25 cd03182 GST_C_GTT2_like GST_C 99.8 7.8E-19 1.7E-23 105.0 10.1 115 23-139 1-117 (117)
26 cd03185 GST_C_Tau GST_C family 99.8 4.6E-19 1E-23 107.3 8.8 110 24-144 1-114 (126)
27 KOG0868 Glutathione S-transfer 99.8 1.7E-18 3.8E-23 106.7 10.9 133 1-143 71-205 (217)
28 cd03190 GST_C_ECM4_like GST_C 99.8 1.6E-18 3.5E-23 106.9 10.7 110 25-144 3-117 (142)
29 cd03177 GST_C_Delta_Epsilon GS 99.8 2E-18 4.4E-23 103.4 9.1 109 26-143 2-110 (118)
30 PRK10387 glutaredoxin 2; Provi 99.8 8.9E-19 1.9E-23 114.7 7.7 128 1-139 62-207 (210)
31 PLN02907 glutamate-tRNA ligase 99.8 7.4E-18 1.6E-22 126.0 10.8 107 1-138 52-159 (722)
32 TIGR00862 O-ClC intracellular 99.8 1.5E-17 3.2E-22 109.9 10.9 125 1-143 72-218 (236)
33 cd03209 GST_C_Mu GST_C family, 99.7 4.6E-17 1E-21 97.9 11.3 108 26-145 2-109 (121)
34 PLN02378 glutathione S-transfe 99.7 6.2E-18 1.3E-22 111.0 7.7 121 1-144 73-198 (213)
35 cd03208 GST_C_Alpha GST_C fami 99.7 4.7E-17 1E-21 99.8 11.0 76 68-145 38-115 (137)
36 cd03184 GST_C_Omega GST_C fami 99.7 1.1E-17 2.5E-22 100.9 8.1 106 26-144 2-112 (124)
37 cd03207 GST_C_8 GST_C family, 99.7 1.6E-17 3.5E-22 97.1 7.0 101 31-145 2-102 (103)
38 cd03195 GST_C_4 GST_C family, 99.7 1.6E-17 3.4E-22 98.9 6.9 112 24-145 1-113 (114)
39 PLN02817 glutathione dehydroge 99.7 3.1E-17 6.8E-22 110.4 9.1 121 1-144 126-250 (265)
40 cd03179 GST_C_1 GST_C family, 99.7 2.8E-17 6E-22 96.4 6.7 104 26-134 2-105 (105)
41 cd03210 GST_C_Pi GST_C family, 99.7 3.4E-16 7.3E-21 94.8 11.5 79 65-145 31-112 (126)
42 cd03206 GST_C_7 GST_C family, 99.7 1.5E-16 3.3E-21 92.6 7.7 99 31-139 2-100 (100)
43 PF00043 GST_C: Glutathione S- 99.7 1.8E-16 4E-21 91.3 7.5 75 62-137 21-95 (95)
44 cd03200 GST_C_JTV1 GST_C famil 99.7 2.7E-16 5.8E-21 90.7 8.0 96 5-136 1-96 (96)
45 cd03198 GST_C_CLIC GST_C famil 99.7 4.1E-16 8.9E-21 94.3 7.6 81 63-143 23-122 (134)
46 cd03203 GST_C_Lambda GST_C fam 99.7 1.1E-15 2.3E-20 91.8 9.1 104 23-144 1-110 (120)
47 TIGR02182 GRXB Glutaredoxin, G 99.7 2.9E-16 6.3E-21 102.8 6.2 128 1-139 61-206 (209)
48 PF13410 GST_C_2: Glutathione 99.7 1.1E-15 2.4E-20 83.0 7.5 68 65-132 2-69 (69)
49 cd03194 GST_C_3 GST_C family, 99.6 3.4E-15 7.4E-20 88.8 9.6 71 69-145 41-114 (114)
50 cd03204 GST_C_GDAP1 GST_C fami 99.6 2.2E-15 4.7E-20 88.5 7.3 79 61-139 21-111 (111)
51 cd03201 GST_C_DHAR GST_C famil 99.6 1.2E-15 2.6E-20 91.5 5.6 77 68-144 29-109 (121)
52 cd00299 GST_C_family Glutathio 99.6 5.1E-15 1.1E-19 85.7 6.3 99 31-133 2-100 (100)
53 KOG4420 Uncharacterized conser 99.6 2.3E-14 5E-19 93.5 8.5 83 63-145 199-287 (325)
54 PF14497 GST_C_3: Glutathione 99.6 4.8E-15 1E-19 86.1 4.4 96 23-135 2-99 (99)
55 cd03192 GST_C_Sigma_like GST_C 99.5 1.3E-13 2.8E-18 80.7 8.9 101 26-133 2-104 (104)
56 cd03202 GST_C_etherase_LigE GS 99.5 7.4E-14 1.6E-18 84.2 7.7 69 67-136 56-124 (124)
57 cd03193 GST_C_Metaxin GST_C fa 99.5 2E-13 4.4E-18 77.5 7.9 66 69-134 19-88 (88)
58 cd03205 GST_C_6 GST_C family, 99.4 1.5E-12 3.2E-17 75.4 8.1 71 60-133 28-98 (98)
59 cd03211 GST_C_Metaxin2 GST_C f 99.4 2E-12 4.2E-17 78.2 6.6 69 66-134 54-126 (126)
60 COG0435 ECM4 Predicted glutath 99.3 1.8E-12 4E-17 85.5 5.4 132 1-144 146-285 (324)
61 cd03212 GST_C_Metaxin1_3 GST_C 99.3 1.7E-11 3.6E-16 75.1 7.3 72 64-135 59-134 (137)
62 KOG2903 Predicted glutathione 99.3 3E-12 6.5E-17 83.8 2.8 132 1-144 140-287 (319)
63 PF14834 GST_C_4: Glutathione 99.3 3E-10 6.6E-15 65.8 10.5 112 23-144 1-113 (117)
64 cd03197 GST_C_mPGES2 GST_C fam 99.2 3.1E-11 6.7E-16 73.9 5.6 62 72-135 82-145 (149)
65 KOG4244 Failed axon connection 99.0 6.3E-09 1.4E-13 68.7 9.7 67 69-135 203-272 (281)
66 KOG1422 Intracellular Cl- chan 98.9 8.7E-09 1.9E-13 65.8 7.1 76 66-141 120-201 (221)
67 KOG3027 Mitochondrial outer me 98.4 1.2E-05 2.5E-10 51.7 10.0 70 67-136 175-248 (257)
68 KOG3028 Translocase of outer m 98.2 5.7E-05 1.2E-09 51.5 11.5 131 3-135 66-233 (313)
69 KOG3029 Glutathione S-transfer 97.8 3.5E-05 7.6E-10 51.9 4.7 64 71-135 290-354 (370)
70 PF04399 Glutaredoxin2_C: Glut 97.6 0.00037 8.1E-09 42.3 6.3 66 70-140 60-125 (132)
71 KOG1147 Glutamyl-tRNA syntheta 97.5 0.00014 3E-09 53.3 4.2 93 18-142 67-161 (712)
72 COG2999 GrxB Glutaredoxin 2 [P 97.5 0.00031 6.8E-09 44.3 4.8 66 71-142 144-210 (215)
73 cd03199 GST_C_GRX2 GST_C famil 97.2 0.0018 3.8E-08 39.1 5.6 65 70-139 61-125 (128)
74 PF11801 Tom37_C: Tom37 C-term 95.7 0.066 1.4E-06 34.1 6.2 39 73-111 112-154 (168)
75 KOG1668 Elongation factor 1 be 85.5 1.1 2.3E-05 30.0 2.8 58 75-139 10-67 (231)
76 PF04255 DUF433: Protein of un 55.0 12 0.00026 19.0 1.8 39 84-127 7-45 (56)
77 PRK15371 effector protein YopJ 50.9 52 0.0011 23.2 4.8 51 69-120 23-73 (287)
78 cd06891 PX_Vps17p The phosphoi 48.8 13 0.00028 23.1 1.5 21 121-141 109-129 (140)
79 PF07862 Nif11: Nitrogen fixat 48.0 34 0.00073 16.6 2.8 21 124-144 4-24 (49)
80 PF03421 YopJ: YopJ Serine/Thr 47.7 55 0.0012 21.2 4.3 61 72-133 2-62 (177)
81 PF11732 Thoc2: Transcription- 41.7 46 0.001 18.3 2.8 45 86-134 32-76 (77)
82 PF00392 GntR: Bacterial regul 40.0 49 0.0011 16.9 2.8 27 76-102 4-31 (64)
83 TIGR03798 ocin_TIGR03798 bacte 35.6 63 0.0014 16.8 2.7 21 124-144 2-22 (64)
84 COG4041 Predicted membrane pro 33.9 24 0.00053 21.6 1.1 62 80-142 47-112 (171)
85 PF10990 DUF2809: Protein of u 32.7 30 0.00064 19.7 1.2 17 89-105 71-87 (91)
86 PF09098 Dehyd-heme_bind: Quin 30.7 38 0.00082 21.6 1.6 12 2-13 57-68 (167)
87 COG2442 Uncharacterized conser 30.2 34 0.00073 18.9 1.2 35 86-125 21-55 (79)
88 cd08540 SAM_PNT-ERG Sterile al 29.8 73 0.0016 17.4 2.4 22 21-42 2-25 (75)
89 PF12362 DUF3646: DNA polymera 28.3 51 0.0011 19.7 1.8 17 130-146 92-108 (117)
90 cd08531 SAM_PNT-ERG_FLI-1 Ster 27.9 85 0.0018 17.1 2.5 22 21-42 2-25 (75)
91 PF15368 BioT2: Spermatogenesi 26.1 1.8E+02 0.0039 18.5 5.1 24 63-86 80-103 (170)
92 PF13543 KSR1-SAM: SAM like do 25.8 74 0.0016 19.5 2.2 23 120-142 63-85 (129)
93 PF10757 YbaJ: Biofilm formati 24.8 77 0.0017 19.0 2.0 27 4-35 76-102 (122)
94 cd01968 Nitrogenase_NifE_I Nit 23.5 3.1E+02 0.0067 20.3 6.9 89 4-109 220-308 (410)
95 PHA02776 E7 protein; Provision 23.2 34 0.00074 19.9 0.4 12 92-103 2-13 (101)
96 cd08533 SAM_PNT-ETS-1,2 Steril 23.2 1.2E+02 0.0025 16.4 2.4 17 26-42 8-24 (71)
97 cd08542 SAM_PNT-ETS-1 Sterile 23.0 1.2E+02 0.0027 17.1 2.6 26 17-42 12-39 (88)
98 PF07319 DnaI_N: Primosomal pr 22.7 1.5E+02 0.0033 16.8 3.0 22 125-146 20-41 (94)
99 TIGR02513 type_III_yscB type I 22.7 94 0.002 19.2 2.2 19 76-94 2-20 (139)
100 cd08541 SAM_PNT-FLI-1 Sterile 22.2 1.4E+02 0.0029 17.1 2.6 26 17-42 10-37 (91)
101 PRK10667 Hha toxicity attenuat 22.2 97 0.0021 18.6 2.1 26 5-35 77-102 (122)
102 cd07291 PX_SNX5 The phosphoino 21.8 42 0.00091 20.8 0.6 18 124-141 113-130 (141)
103 PF04659 Arch_fla_DE: Archaeal 21.8 1.7E+02 0.0038 16.9 3.1 23 89-111 6-29 (99)
104 PF14084 DUF4264: Protein of u 21.7 70 0.0015 16.1 1.3 22 72-93 14-35 (52)
105 PF08557 Lipid_DES: Sphingolip 21.6 1.1E+02 0.0023 14.5 1.8 22 122-143 12-33 (39)
106 COG2249 MdaB Putative NADPH-qu 21.6 23 0.00049 23.1 -0.6 14 123-136 83-96 (189)
107 PF10719 ComFB: Late competenc 20.9 1.2E+02 0.0026 16.7 2.3 32 78-110 10-41 (85)
108 PF00527 E7: E7 protein, Early 20.8 33 0.00071 19.5 0.0 12 93-104 1-12 (92)
109 PF04827 Plant_tran: Plant tra 20.7 1.6E+02 0.0034 19.7 3.0 44 65-108 148-193 (205)
110 PF13227 DUF4035: Protein of u 20.1 71 0.0015 16.2 1.1 11 94-104 31-41 (53)
No 1
>PLN02395 glutathione S-transferase
Probab=99.95 E-value=5.9e-27 Score=153.87 Aligned_cols=146 Identities=75% Similarity=1.280 Sum_probs=115.0
Q ss_pred ChhHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHH
Q 042826 1 SRAIIRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDV 80 (146)
Q Consensus 1 S~aI~~yL~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (146)
|.+|++||++++++.++.++|.++.+++++++|+.+.+..+.+.+........+.+..+....+...+...+.+.+.++.
T Consensus 66 S~aI~~YL~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 145 (215)
T PLN02395 66 SRAIMRYYAEKYRSQGPDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDV 145 (215)
T ss_pred HHHHHHHHHHHcCCCCcCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHH
Confidence 68999999999974344699999999999999999988888776655544433333222333445566678889999999
Q ss_pred HHHHhcCCCcccCCCCChhhhhhhhHHHHhhCCccchhhhhcchHHHHHHHHhcCChhHHHHHhhC
Q 042826 81 YEERLSKSNYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIRDRKHVSAWWDDISNRPSWKKVLELY 146 (146)
Q Consensus 81 le~~l~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~~p~~~~~~~~~ 146 (146)
+|++|++++|++|+++|+||+++++++.++.........+..+|+|.+|+++|.++|++++++..|
T Consensus 146 le~~L~~~~~l~G~~~s~ADi~l~~~~~~~~~~~~~~~~~~~~p~L~~w~~~~~~rp~~k~~~~~~ 211 (215)
T PLN02395 146 YEARLSKSKYLAGDFVSLADLAHLPFTEYLVGPIGKAYLIKDRKHVSAWWDDISSRPAWKEVLAKY 211 (215)
T ss_pred HHHHhcCCccccCCCcCHHHHHHHHHHHHHhcccchhhhhccCchHHHHHHHHHcChHHHHHHHHh
Confidence 999999889999999999999999888776422122224678999999999999999999998865
No 2
>PLN02473 glutathione S-transferase
Probab=99.95 E-value=2.3e-26 Score=150.94 Aligned_cols=145 Identities=46% Similarity=0.876 Sum_probs=112.1
Q ss_pred ChhHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHH
Q 042826 1 SRAIIRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDV 80 (146)
Q Consensus 1 S~aI~~yL~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (146)
|.||++||++++|+.+..++|.++.+++++++|+.+..+.+.+.+........+.+..+.+......+.....+.+.++.
T Consensus 67 S~aI~~YL~~~~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 146 (214)
T PLN02473 67 SRAIARYYATKYADQGTDLLGKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDV 146 (214)
T ss_pred hHHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHH
Confidence 78999999999974344689999999999999999887777654433333333333223344556666778889999999
Q ss_pred HHHHhcCCCcccCCCCChhhhhhhhHHHHhhCCccchhhhhcchHHHHHHHHhcCChhHHHHHhh
Q 042826 81 YEERLSKSNYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIRDRKHVSAWWDDISNRPSWKKVLEL 145 (146)
Q Consensus 81 le~~l~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~~p~~~~~~~~ 145 (146)
+|++|++++|++|+++|+||+++++.+.++..........+.+|+|.+|++||.++|++++++..
T Consensus 147 le~~L~~~~~l~Gd~~t~ADi~~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~~~~ 211 (214)
T PLN02473 147 YENRLATNRYLGGDEFTLADLTHMPGMRYIMNETSLSGLVTSRENLNRWWNEISARPAWKKLMEL 211 (214)
T ss_pred HHHHhccCCcccCCCCCHHHHHHHHHHHHHHhccccHHHHhcCHHHHHHHHHHhcChhhHHHHHH
Confidence 99999988999999999999999988877543222111357899999999999999999998753
No 3
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.92 E-value=8.2e-24 Score=138.61 Aligned_cols=130 Identities=17% Similarity=0.185 Sum_probs=100.3
Q ss_pred ChhHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHH
Q 042826 1 SRAIIRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDV 80 (146)
Q Consensus 1 S~aI~~yL~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (146)
|.||++||++++|+ ..++|.++.+++++++|+.+....+...... . . ...+...+.....+...++.
T Consensus 72 S~AIl~YL~~~~~~--~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~-----~-~-----~~~~~~~~~~~~~l~~~l~~ 138 (211)
T PRK09481 72 SRIIMEYLDERFPH--PPLMPVYPVARGESRLMMHRIEKDWYSLMNK-----I-V-----NGSASEADAARKQLREELLA 138 (211)
T ss_pred HHHHHHHHHHhCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----H-h-----cCCHHHHHHHHHHHHHHHHH
Confidence 68999999999963 5799999999999999998765543221111 1 0 11234455677788899999
Q ss_pred HHHHhcCCCcccCCCCChhhhhhhhHHHHhhCCccchhhhhcchHHHHHHHHhcCChhHHHHHh
Q 042826 81 YEERLSKSNYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIRDRKHVSAWWDDISNRPSWKKVLE 144 (146)
Q Consensus 81 le~~l~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~~p~~~~~~~ 144 (146)
+|++|++++|++|+++|+||+++++.+.++..... ......+|+|.+|+++|.+||++++++.
T Consensus 139 le~~L~~~~~l~G~~~t~AD~~l~~~~~~~~~~~~-~~~~~~~p~l~~w~~~~~~rp~~~~~~~ 201 (211)
T PRK09481 139 IAPVFGEKPYFMSEEFSLVDCYLAPLLWRLPVLGI-ELSGPGAKELKGYMTRVFERDSFLASLT 201 (211)
T ss_pred HHHHhccCCcccCCCccHHHHHHHHHHHHHHhcCC-CCCCCCChhHHHHHHHHhccHHHHHHcC
Confidence 99999999999999999999999999877653321 2122578999999999999999998864
No 4
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.91 E-value=7.4e-24 Score=139.20 Aligned_cols=134 Identities=23% Similarity=0.339 Sum_probs=102.4
Q ss_pred ChhHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHH
Q 042826 1 SRAIIRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDV 80 (146)
Q Consensus 1 S~aI~~yL~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (146)
|.||++||+++++ .+.|.++.+++++++|+.|....+.+.+.... .+... .....+...+.....+.+.++.
T Consensus 72 S~AI~~YL~~~~~----~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~l~~ 143 (215)
T PRK13972 72 SGAILLYLAEKTG----LFLSHETRERAATLQWLFWQVGGLGPMLGQNH---HFNHA-APQTIPYAIERYQVETQRLYHV 143 (215)
T ss_pred HHHHHHHHHHhcC----CCCCCCHHHHHHHHHHHHHHhhccCcceeeee---eeecc-CCCCCchHHHHHHHHHHHHHHH
Confidence 7899999999984 47888899999999999998877765432110 01100 1122344556667789999999
Q ss_pred HHHHhcCCCcccCCCCChhhhhhhhHHHHhhCCccchhhhhcchHHHHHHHHhcCChhHHHHHhh
Q 042826 81 YEERLSKSNYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIRDRKHVSAWWDDISNRPSWKKVLEL 145 (146)
Q Consensus 81 le~~l~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~~p~~~~~~~~ 145 (146)
+|++|++++|++|+++|+|||++++++..+... .+..+.+|+|.+|+++|.++|++++++.+
T Consensus 144 le~~L~~~~~l~Gd~~t~ADi~l~~~~~~~~~~---~~~~~~~P~l~~w~~r~~~rp~~~~~~~~ 205 (215)
T PRK13972 144 LNKRLENSPWLGGENYSIADIACWPWVNAWTRQ---RIDLAMYPAVKNWHERIRSRPATGQALLK 205 (215)
T ss_pred HHHHhccCccccCCCCCHHHHHHHHHHHHHhhc---CCcchhCHHHHHHHHHHHhCHHHHHHHHH
Confidence 999999899999999999999998877544322 23467899999999999999999998754
No 5
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.91 E-value=1.3e-23 Score=136.65 Aligned_cols=131 Identities=19% Similarity=0.321 Sum_probs=102.0
Q ss_pred ChhHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHH
Q 042826 1 SRAIIRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDV 80 (146)
Q Consensus 1 S~aI~~yL~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (146)
|.+|++||++++++ .+.+.|.++.+++++++|+.+....+.+.+... +.+ ...+...+.....+.+.++.
T Consensus 66 S~aI~~YL~~~~~~-~~l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~l~~ 135 (201)
T PRK10542 66 GVAIMQYLADSVPD-RQLLAPVGSLSRYHTIEWLNYIATELHKGFTPL-----FRP----DTPEEYKPTVRAQLEKKFQY 135 (201)
T ss_pred HHHHHHHHHHhCcc-cccCCCCCcHHHHHHHHHHHHHHhhhhhhhhhc-----cCC----CChHHHHHHHHHHHHHHHHH
Confidence 78999999999963 223446678899999999998776665433221 111 22334445667889999999
Q ss_pred HHHHhcCCCcccCCCCChhhhhhhhHHHHhhCCccchhhhhcchHHHHHHHHhcCChhHHHHHh
Q 042826 81 YEERLSKSNYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIRDRKHVSAWWDDISNRPSWKKVLE 144 (146)
Q Consensus 81 le~~l~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~~p~~~~~~~ 144 (146)
+|.+|++++|++|+++|+||+++++++.+.... ....+.+|+|.+|+++|.++|+++++++
T Consensus 136 le~~L~~~~~l~G~~~s~ADi~l~~~~~~~~~~---~~~~~~~p~l~~w~~~~~~~p~~k~~~~ 196 (201)
T PRK10542 136 VDEALADEQWICGQRFTIADAYLFTVLRWAYAV---KLNLEGLEHIAAYMQRVAERPAVAAALK 196 (201)
T ss_pred HHHHhcCCCeeeCCCCcHHhHHHHHHHHHhhcc---CCCcccchHHHHHHHHHHcCHHHHHHHH
Confidence 999999899999999999999999988876432 2235789999999999999999999876
No 6
>PRK11752 putative S-transferase; Provisional
Probab=99.90 E-value=9.9e-23 Score=137.37 Aligned_cols=136 Identities=26% Similarity=0.368 Sum_probs=100.9
Q ss_pred ChhHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHH
Q 042826 1 SRAIIRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDV 80 (146)
Q Consensus 1 S~aI~~yL~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (146)
|.||++||+++++ .++|.++.+++++++|+.+....+ +.+...+.. .+.. .....+...+.....+.+.++.
T Consensus 118 S~AIl~YL~~~~~----~L~P~~~~era~v~~wl~~~~~~~-~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~L~~ 189 (264)
T PRK11752 118 SGAILLYLAEKFG----AFLPKDLAARTETLNWLFWQQGSA-PFLGGGFGH-FYAY--APEKIEYAINRFTMEAKRQLDV 189 (264)
T ss_pred HHHHHHHHHHhcC----CcCCCCHHHHHHHHHHHHHHhhhh-hHHHHHHHH-HHHh--CCccchHHHHHHHHHHHHHHHH
Confidence 7899999999994 489999999999999999876543 212111111 1111 1122234455667788999999
Q ss_pred HHHHhcCCCcccCCCCChhhhhhhhHHHHhhCCc----cchhhhhcchHHHHHHHHhcCChhHHHHHh
Q 042826 81 YEERLSKSNYLAGDFFSLADLSHLPFTQYLVGPM----EKEYMIRDRKHVSAWWDDISNRPSWKKVLE 144 (146)
Q Consensus 81 le~~l~~~~~l~G~~~t~aD~~~~~~l~~~~~~~----~~~~~~~~~p~l~~~~~r~~~~p~~~~~~~ 144 (146)
+|++|++++|++|+++|+|||++++++.++.... ......+.+|+|.+|+++|.++|++++++.
T Consensus 190 le~~L~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~~P~L~~w~~rv~~rPs~k~~~~ 257 (264)
T PRK11752 190 LDKQLAEHEYIAGDEYTIADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWAKEIAERPAVKRGRI 257 (264)
T ss_pred HHHHhccCCCCCCCccCHHHHHHHHHHHHHhhccccccccccCcccCHHHHHHHHHHHhCHHHHHHHh
Confidence 9999998999999999999999998887654210 111235789999999999999999999875
No 7
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.90 E-value=1.9e-22 Score=132.06 Aligned_cols=138 Identities=22% Similarity=0.208 Sum_probs=103.0
Q ss_pred ChhHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHH
Q 042826 1 SRAIIRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDV 80 (146)
Q Consensus 1 S~aI~~yL~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (146)
|.+|++||++++++ +.+.|.++.+++++++|+.++...+.+.......... .+..+ ...+...+...+.+.+.++.
T Consensus 65 S~aI~~yl~~~~~~--~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~l~~ 140 (210)
T TIGR01262 65 SLAIIEYLEETYPD--PPLLPADPIKRARVRALALLIACDIHPLNNLRVLQYL-REKLG-VEEEARNRWYQHWISKGFAA 140 (210)
T ss_pred HHHHHHHHHHhCCC--CCCCCCCHHHHHHHHHHHHHHhcccChhhhhhHHHHH-HhhcC-CCHHHHHHHHHHHHHHHHHH
Confidence 68999999999963 5699999999999999999887666553221111111 11111 12233344456679999999
Q ss_pred HHHHhcC--CCcccCCCCChhhhhhhhHHHHhhCCccchhhhhcchHHHHHHHHhcCChhHHHHHhh
Q 042826 81 YEERLSK--SNYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIRDRKHVSAWWDDISNRPSWKKVLEL 145 (146)
Q Consensus 81 le~~l~~--~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~~p~~~~~~~~ 145 (146)
+|++|++ ++|++|+++|+|||++++++.++... ....+.+|+|.+|+++|.++|++++++..
T Consensus 141 le~~L~~~~~~~l~G~~~T~ADi~~~~~l~~~~~~---~~~~~~~p~l~~~~~~~~~rp~~~~~~~~ 204 (210)
T TIGR01262 141 LEALLQPHAGAFCVGDTPTLADLCLVPQVYNAERF---GVDLTPYPTLRRIAAALAALPAFQRAHPE 204 (210)
T ss_pred HHHHHhcCCCCEeeCCCCCHHHHHHHHHHHHHHHc---CCCcccchHHHHHHHHHhcCHHHHHhCcc
Confidence 9999986 46999999999999999998876522 22357899999999999999999998753
No 8
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=8.4e-22 Score=129.12 Aligned_cols=132 Identities=29% Similarity=0.456 Sum_probs=106.5
Q ss_pred ChhHHHHHHHHhccCCCCCCCCCHH---HHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHH
Q 042826 1 SRAIIRYYAEKYRSQGTELLGKTIE---ERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKV 77 (146)
Q Consensus 1 S~aI~~yL~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (146)
|.||++||+++||+ +.++|.++. +|+++..|+.+....+.+.+....... ..... ...+...+.....+...
T Consensus 65 S~AI~~YL~~~~~~--~~l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~ 139 (211)
T COG0625 65 SGAILEYLAERYPG--PPLLPADPLARRARALLLWWLFFAASDLHPVIGQRRRAL-LGSEP--ELLEAALEAARAEIRAL 139 (211)
T ss_pred HHHHHHHHHhhCCC--CCcCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhh-ccccc--cccHHHHHHHHHHHHHH
Confidence 78999999999973 229998885 888888999999888888776655444 32211 11567788889999999
Q ss_pred HHHHHHHhcCCCcccCCCCChhhhhhhhHHHHhhCCccchhhhhcchHHHHHHHHhcCChhHH
Q 042826 78 LDVYEERLSKSNYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIRDRKHVSAWWDDISNRPSWK 140 (146)
Q Consensus 78 l~~le~~l~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~~p~~~ 140 (146)
++.+|..|++++|++|+++|+||+++++.+.++.... ...+.+|++.+|++||.++|.++
T Consensus 140 l~~le~~L~~~~~l~G~~~tiAD~~~~~~~~~~~~~~---~~~~~~p~l~~w~~r~~~rp~~~ 199 (211)
T COG0625 140 LALLEALLADGPYLAGDRFTIADIALAPLLWRLALLG---EELADYPALKAWYERVLARPAFR 199 (211)
T ss_pred HHHHHHHhccCCcccCCCCCHHHHHHHHHHHHhhhcC---cccccChHHHHHHHHHHcCCchh
Confidence 9999999999999999999999999998888754222 12378999999999999999953
No 9
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.89 E-value=8.2e-22 Score=128.35 Aligned_cols=136 Identities=18% Similarity=0.116 Sum_probs=102.1
Q ss_pred ChhHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHH
Q 042826 1 SRAIIRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDV 80 (146)
Q Consensus 1 S~aI~~yL~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (146)
|.+|++||+++++ ++.++|.++.+++++++|..+.++.+.... ..+..... + +....+...+.....+.+.++.
T Consensus 63 S~aI~~yL~~~~~--~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~-~--~~~~~~~~~~~~~~~l~~~l~~ 136 (202)
T PRK10357 63 SPIIAEYIELLNV--APAMLPRDPLAALRVRQLEALADGIMDAAL-VSVREQAR-P--AAQQSEDELLRQREKINRSLDA 136 (202)
T ss_pred HHHHHHHHHHhCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhC-c--cccccHHHHHHHHHHHHHHHHH
Confidence 6899999999985 356999999999999999888766554332 22222221 1 1233445556778899999999
Q ss_pred HHHHhcCCCcccCCCCChhhhhhhhHHHHhhCCccchhhhhcchHHHHHHHHhcCChhHHHHH
Q 042826 81 YEERLSKSNYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIRDRKHVSAWWDDISNRPSWKKVL 143 (146)
Q Consensus 81 le~~l~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~~p~~~~~~ 143 (146)
+|++|++++ ++|+++|+||+++++.+.++............+|+|.+|++||.+||+++++.
T Consensus 137 le~~L~~~~-l~Gd~~t~ADi~l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~i~~rp~~~~~~ 198 (202)
T PRK10357 137 LEGYLVDGT-LKTDTVNLATIAIACAVGYLNFRRVAPGWCVDRPHLVKLVENLFQRESFARTE 198 (202)
T ss_pred HHHhhccCc-ccCCCcCHHHHHHHHHHHHHHhcccCcchhhcChHHHHHHHHHhcChhhhhcC
Confidence 999998888 99999999999999998876432111112467999999999999999999853
No 10
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=6.5e-22 Score=128.06 Aligned_cols=132 Identities=20% Similarity=0.305 Sum_probs=104.7
Q ss_pred ChhHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHH
Q 042826 1 SRAIIRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDV 80 (146)
Q Consensus 1 S~aI~~yL~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (146)
|..|++||++.+++ +++++|+||.+|++.+.|+.+++..+......... ....+..+.....+...+..
T Consensus 72 SliiveYiDe~w~~-~~~iLP~DPy~Ra~arfwa~~id~~~~~~~~~~~~----------~~~~e~~~~~~~e~~e~l~~ 140 (231)
T KOG0406|consen 72 SLIIVEYIDETWPS-GPPILPSDPYERAQARFWAEYIDKKVFFVGRFVVA----------AKGGEEQEAAKEELREALKV 140 (231)
T ss_pred hHHHHHHHHhhccC-CCCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHh----------hcCchHHHHHHHHHHHHHHH
Confidence 78899999999974 78999999999999999999998766543333211 12334445677788899999
Q ss_pred HHHHhc-CCCcccCCCCChhhhhhhhHHHHhhCCccc----h-hhhhcchHHHHHHHHhcCChhHHHHH
Q 042826 81 YEERLS-KSNYLAGDFFSLADLSHLPFTQYLVGPMEK----E-YMIRDRKHVSAWWDDISNRPSWKKVL 143 (146)
Q Consensus 81 le~~l~-~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~----~-~~~~~~p~l~~~~~r~~~~p~~~~~~ 143 (146)
+|+.|. +++|+.|++++++|+++++++..+...... . ..-+++|+|.+|.+||.++|.|++++
T Consensus 141 lE~el~k~k~~fgG~~~G~vDi~~~p~~~~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~~~V~~~~ 209 (231)
T KOG0406|consen 141 LEEELGKGKDFFGGETIGFVDIAIGPSFERWLAVLEKFGGVKFIIEEETPKLIKWIKRMKEDEAVKAVL 209 (231)
T ss_pred HHHHHhcCCCCCCCCCcCHhhhhHHhhHHHHHHHHHHhcCcccCCCCCCccHHHHHHHHhcChhHHhhc
Confidence 999998 789999999999999999777665543211 1 13478999999999999999999875
No 11
>PRK15113 glutathione S-transferase; Provisional
Probab=99.87 E-value=1.1e-21 Score=128.82 Aligned_cols=135 Identities=19% Similarity=0.211 Sum_probs=97.3
Q ss_pred ChhHHHHHHHHhccCC-CCCCCCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHH
Q 042826 1 SRAIIRYYAEKYRSQG-TELLGKTIEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLD 79 (146)
Q Consensus 1 S~aI~~yL~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (146)
|.||++||+++++++. ..++|.++.+++++++|+.+.+..+.+..........+.+ ...+...+...+.+.+.++
T Consensus 72 S~aI~~YL~~~~~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~ 147 (214)
T PRK15113 72 SSAIAEYLEERFAPPAWERIYPADLQARARARQIQAWLRSDLMPLREERPTDVVFAG----AKKAPLSEAGKAAAEKLFA 147 (214)
T ss_pred HHHHHHHHHHHcCCCCccccCCCCHHHHHHHHHHHHHHHhhhHHHhccCccchhccC----CCCCcccHHHHHHHHHHHH
Confidence 6899999999996321 1299999999999999999987666543211100011111 1122233445667899999
Q ss_pred HHHHHhcC-CCcccCCCCChhhhhhhhHHHHhhCCccchhhhhcchHHHHHHHHhcCChhHHHHHhh
Q 042826 80 VYEERLSK-SNYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIRDRKHVSAWWDDISNRPSWKKVLEL 145 (146)
Q Consensus 80 ~le~~l~~-~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~~p~~~~~~~~ 145 (146)
.+|++|++ ++|++|+ +|+||+++++.+.++.... ..+ .|+|.+|++||.++|+++++++.
T Consensus 148 ~le~~L~~~~~~l~G~-~TlADi~l~~~l~~~~~~~---~~~--~p~l~~~~~r~~~rp~~~~~~~~ 208 (214)
T PRK15113 148 VAERLLAPGQPNLFGE-WCIADTDLALMLNRLVLHG---DEV--PERLADYATFQWQRASVQRWLAL 208 (214)
T ss_pred HHHHHHhcCCCEeeCC-ccHHHHHHHHHHHHHHHcC---CCC--CHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999975 5799996 9999999999988765321 122 29999999999999999999863
No 12
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=99.87 E-value=4.5e-21 Score=114.82 Aligned_cols=117 Identities=60% Similarity=1.048 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCChhhhhhhh
Q 042826 26 ERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDVYEERLSKSNYLAGDFFSLADLSHLP 105 (146)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aD~~~~~ 105 (146)
+|+++.+|+.|....+.+.+........+.+..+.+.++...+.....+.+.++.+|++|++++|++|+++|+|||++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~ 81 (118)
T cd03187 2 ERAIVEQWLEVESHQFDPPASALAFELVFKPMLGLPTDEAVVEENEEKLKKVLDVYEARLSKSKYLAGDSFTLADLSHLP 81 (118)
T ss_pred chHHHHHHHHHHHhhcchhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHcccCcccCCCCccHHHHHHHH
Confidence 68899999999888888877665444444443333456666777888999999999999999999999999999999998
Q ss_pred HHHHhhCCccchhhhhcchHHHHHHHHhcCChhHHHHH
Q 042826 106 FTQYLVGPMEKEYMIRDRKHVSAWWDDISNRPSWKKVL 143 (146)
Q Consensus 106 ~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~~p~~~~~~ 143 (146)
++.++... ......+.+|+|.+|+++|.++|++++++
T Consensus 82 ~~~~~~~~-~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 118 (118)
T cd03187 82 YLQYLMAT-PFAKLFDSRPHVKAWWEDISARPAWKKVL 118 (118)
T ss_pred HHHHHHHc-cchhhhhcCchHHHHHHHHHhCHHHHhhC
Confidence 88876532 12223568999999999999999998763
No 13
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=8.2e-21 Score=125.28 Aligned_cols=140 Identities=37% Similarity=0.571 Sum_probs=114.2
Q ss_pred ChhHHHHHHHHhccCCCC-CCCCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHhhc-cCCCCCCHHHHHHHHHHHHHHH
Q 042826 1 SRAIIRYYAEKYRSQGTE-LLGKTIEERGLVEQWLEVEAHNYHPPIYEMTVQLLFAS-KLGLSVDEKLVKKSEEKLGKVL 78 (146)
Q Consensus 1 S~aI~~yL~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l 78 (146)
|+||+.||.++|. ..+. ++|.++.+++.+++|+.+..+.+.+... ....+.| ..+...+....+.....+.+.+
T Consensus 67 S~AI~~Yl~~ky~-~~~~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 142 (226)
T KOG0867|consen 67 SHAILRYLAEKYG-PLGGILLPKDLKERAIVDQWLEFENGVLDPVTF---ERPILAPLLVGLPLNPTAVKELEAKLRKAL 142 (226)
T ss_pred HHHHHHHHHHHcC-CCCcccCCcCHHHHHHHHHHHHhhhcccccccc---cceeeecceecccCcchhhHHHHHHHHHHH
Confidence 6899999999997 4445 9999999999999999998888877643 2223344 3445557778888999999999
Q ss_pred HHHHHHhcCCCcccCCCCChhhhhhhhHHHHhhCCccchhhhhcchHHHHHHHHhcCChhHHHHHh
Q 042826 79 DVYEERLSKSNYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIRDRKHVSAWWDDISNRPSWKKVLE 144 (146)
Q Consensus 79 ~~le~~l~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~~p~~~~~~~ 144 (146)
..+|+.|.++.|+.|+++|+||+.+++.+..+...........++|++.+|++++.++|++++...
T Consensus 143 ~~~e~~l~~~~yl~g~~~tlADl~~~~~~~~~~~~~~~~~~~~~~p~v~~W~~~~~~~P~~~e~~~ 208 (226)
T KOG0867|consen 143 DNLERFLKTQVYLAGDQLTLADLSLASTLSQFQGKFATEKDFEKYPKVARWYERIQKRPAYEEANE 208 (226)
T ss_pred HHHHHHHccCCcccCCcccHHHHHHhhHHHHHhHhhhhhhhhhhChHHHHHHHHHHhCccHHHHHH
Confidence 999999999999999999999999999888874211123467899999999999999999887653
No 14
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.85 E-value=6.8e-21 Score=113.51 Aligned_cols=114 Identities=16% Similarity=0.228 Sum_probs=90.4
Q ss_pred CCHHHHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCChhhh
Q 042826 22 KTIEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDVYEERLSKSNYLAGDFFSLADL 101 (146)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aD~ 101 (146)
.+|..++++++|+.+.+..+.+.+....+.... +. +..+.....+.+.++.+|++|++++|++|+++|+||+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~i~~~l~~le~~L~~~~yl~Gd~~tlADi 73 (115)
T cd03196 2 QDPAALKEMLALIAENDNEFKHHLDRYKYADRY------PE--ESEEEYRQQAEAFLKDLEARLQQHSYLLGDKPSLADW 73 (115)
T ss_pred CchHHHHHHHHHHHHcchhhHHHHHhccchhhc------Cc--ccHHHHHHHHHHHHHHHHHHHccCCccCCCCccHHHH
Confidence 368899999999999999998877665443221 11 1356678899999999999999999999999999999
Q ss_pred hhhhHHHHhhCCccchhhhhcchHHHHHHHHhcCChhHHHHH
Q 042826 102 SHLPFTQYLVGPMEKEYMIRDRKHVSAWWDDISNRPSWKKVL 143 (146)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~~p~~~~~~ 143 (146)
++++++.++..........+.+|+|.+|+++|.++|++++++
T Consensus 74 ~l~~~l~~~~~~~~~~~~~~~~P~L~~w~~r~~~rpa~~~~~ 115 (115)
T cd03196 74 AIFPFVRQFAHVDPKWFDQSPYPRLRRWLNGFLASPLFSKIM 115 (115)
T ss_pred HHHHHHHHHHHhhhcccCcccCHHHHHHHHHHHcChHHHhhC
Confidence 999887765432111223588999999999999999999863
No 15
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=99.84 E-value=1.3e-20 Score=112.19 Aligned_cols=113 Identities=22% Similarity=0.366 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCChhhhhhhh
Q 042826 26 ERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDVYEERLSKSNYLAGDFFSLADLSHLP 105 (146)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aD~~~~~ 105 (146)
+|+++++|+.|..+.+.+.+..........+ +....+...+.....+.+.++.+|++|++++|++|+++|+|||++++
T Consensus 2 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aDi~~~~ 79 (114)
T cd03188 2 ERARLLEWLNFLSSELHKAFGPLFYPARWAT--DEAAQEEVKAAARERLAARLAYLDAQLAGGPYLLGDRFSVADAYLFV 79 (114)
T ss_pred cHHHHHHHHHHHhhhhchhhhhccccccccc--ChhhHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCcchHHHHHHH
Confidence 5899999999999989887654332211111 11223455667788999999999999998999999999999999999
Q ss_pred HHHHhhCCccchhhhhcchHHHHHHHHhcCChhHHHHH
Q 042826 106 FTQYLVGPMEKEYMIRDRKHVSAWWDDISNRPSWKKVL 143 (146)
Q Consensus 106 ~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~~p~~~~~~ 143 (146)
.+.++... ....+++|+|.+|+++|.++|++++++
T Consensus 80 ~~~~~~~~---~~~~~~~p~l~~w~~~~~~~p~~k~~~ 114 (114)
T cd03188 80 VLRWAPGV---GLDLSDWPNLAAYLARVAARPAVQAAL 114 (114)
T ss_pred HHHHHhhc---CCChhhChHHHHHHHHHHhCHHhHhhC
Confidence 98876532 223568999999999999999999863
No 16
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=99.84 E-value=4.2e-20 Score=109.86 Aligned_cols=113 Identities=26% Similarity=0.365 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCChhhhhhhh
Q 042826 26 ERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDVYEERLSKSNYLAGDFFSLADLSHLP 105 (146)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aD~~~~~ 105 (146)
+++++++|+.|....+.+.+..+.....+.+ +..+...+.....+.+.++.+|+.|++++|++|+++|+|||++++
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~ 76 (113)
T cd03178 1 ERYEVLQWLFFQMGGLGPMFGQAGHFSRYAP----EKIPYAIERYTNEAKRLYGVLDKRLAGRDYLAGDEYSIADIAIFP 76 (113)
T ss_pred ChHHHHHHHHHHHccCCCcchHHHHHHHhCC----CCChHHHHHHHHHHHHHHHHHHHHHccCCcccCCCCCeeeeeHHH
Confidence 4789999999999999988765544333322 234455677888999999999999998999999999999999999
Q ss_pred HHHHhhCCccchhhhhcchHHHHHHHHhcCChhHHHHHh
Q 042826 106 FTQYLVGPMEKEYMIRDRKHVSAWWDDISNRPSWKKVLE 144 (146)
Q Consensus 106 ~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~~p~~~~~~~ 144 (146)
.+.+....... ..+.+|++.+|.++|.++|+++++++
T Consensus 77 ~~~~~~~~~~~--~~~~~p~l~~w~~~~~~~p~~~~~~~ 113 (113)
T cd03178 77 WVRRLEWIGID--DLDDFPNVKRWLDRIAARPAVQRGLA 113 (113)
T ss_pred HHHHHHhcccc--chhhchHHHHHHHHHhhCHHHHHhcC
Confidence 98887533211 25789999999999999999999763
No 17
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.83 E-value=1.4e-19 Score=118.08 Aligned_cols=125 Identities=24% Similarity=0.292 Sum_probs=85.4
Q ss_pred ChhHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhh-hccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHH
Q 042826 1 SRAIIRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEA-HNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLD 79 (146)
Q Consensus 1 S~aI~~yL~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (146)
|.||++||++++| +.+++. +.++..|+.+.. ..+...+ .....+ .+...+.....+.+.++
T Consensus 72 S~AI~~YLa~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~--------~~~~~~~~~~~~~~~l~ 133 (205)
T PTZ00057 72 SQAIVRYLSKKYK-----ICGESE--LNEFYADMIFCGVQDIHYKF---NNTNLF--------KQNETTFLNEELPKWSG 133 (205)
T ss_pred HHHHHHHHHHHcC-----CCCCCH--HHHHHHHHHHHHHHHHHHHH---hhhHHH--------HHHHHHHHHHHHHHHHH
Confidence 6899999999995 334454 344334443321 1111111 100111 11222445678999999
Q ss_pred HHHHHhcCC--CcccCCCCChhhhhhhhHHHHhhCCccchhhhhcchHHHHHHHHhcCChhHHHHHhh
Q 042826 80 VYEERLSKS--NYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIRDRKHVSAWWDDISNRPSWKKVLEL 145 (146)
Q Consensus 80 ~le~~l~~~--~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~~p~~~~~~~~ 145 (146)
.+|++|+++ +|++|+++|+||+++++++.++... ....++.+|+|.+|++||+++|+++++++.
T Consensus 134 ~le~~L~~~~~~~l~Gd~~T~AD~~l~~~~~~~~~~--~~~~l~~~P~l~~~~~r~~~~P~~k~y~~~ 199 (205)
T PTZ00057 134 YFENILKKNHCNYFVGDNLTYADLAVFNLYDDIETK--YPNSLKNFPLLKAHNEFISNLPNIKNYISN 199 (205)
T ss_pred HHHHHHHhCCCCeeeCCcccHHHHHHHHHHHHHHHh--ChhhhccChhHHHHHHHHHhChHHHHHHHh
Confidence 999999753 8999999999999999988776421 133568999999999999999999999863
No 18
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.82 E-value=2.1e-19 Score=107.75 Aligned_cols=114 Identities=23% Similarity=0.277 Sum_probs=87.0
Q ss_pred CCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHhhccC----CCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCC
Q 042826 21 GKTIEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKL----GLSVDEKLVKKSEEKLGKVLDVYEERLSKSNYLAGDFF 96 (146)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~ 96 (146)
|.++.+++++++|+.+..+.+.+.+..........+.. +....+...+.....+.+.++.+|++|++++|++|+++
T Consensus 2 ~~~~~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~ 81 (119)
T cd03189 2 PPDTAEYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLAKKGYFVGDKL 81 (119)
T ss_pred CCCHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHccCCCCCCCCC
Confidence 56889999999999999988888765433222211100 00123455566778899999999999999999999999
Q ss_pred ChhhhhhhhHHHHhhCCccchhhhhcchHHHHHHHHhcCCh
Q 042826 97 SLADLSHLPFTQYLVGPMEKEYMIRDRKHVSAWWDDISNRP 137 (146)
Q Consensus 97 t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~~p 137 (146)
|+|||++++.+.++.... ...+.+|+|.+|+++|+++|
T Consensus 82 t~ADi~l~~~~~~~~~~~---~~~~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 82 TAADIMMSFPLEAALARG---PLLEKYPNIAAYLERIEARP 119 (119)
T ss_pred CHHHHHHHHHHHHHHHcC---cccccCchHHHHHHHHhcCC
Confidence 999999998888765322 14678999999999999987
No 19
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=99.82 E-value=3.7e-19 Score=107.75 Aligned_cols=117 Identities=26% Similarity=0.365 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhhhccChHHHHHHHHHHhhccC-CCCCCHHHHHHHHHHHHHHHHHHHHH-hcCCCcccCCCCChhhhhhh
Q 042826 27 RGLVEQWLEVEAHNYHPPIYEMTVQLLFASKL-GLSVDEKLVKKSEEKLGKVLDVYEER-LSKSNYLAGDFFSLADLSHL 104 (146)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~le~~-l~~~~~l~G~~~t~aD~~~~ 104 (146)
++++++|+.|....+.+.+...+......+.. +....+...+...+.+.+.++.+|++ +++++|++|+++|+|||+++
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~l~Gd~~t~ADi~l~ 81 (126)
T cd03183 2 RARVDEYLAWQHTNLRLGCAKYFWQKVLLPLLGGKPVSPEKVKKAEENLEESLDLLENYFLKDKPFLAGDEISIADLSAV 81 (126)
T ss_pred cccHHHHHHHHHhhhHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHH
Confidence 57789999998888877665544333333321 23346677788889999999999997 55579999999999999999
Q ss_pred hHHHHhhCCccchhhhhcchHHHHHHHHhcC--ChhHHHHHhh
Q 042826 105 PFTQYLVGPMEKEYMIRDRKHVSAWWDDISN--RPSWKKVLEL 145 (146)
Q Consensus 105 ~~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~--~p~~~~~~~~ 145 (146)
+.+.+...... + ..+.+|+|.+|+++|.+ +|+++++++.
T Consensus 82 ~~~~~~~~~~~-~-~~~~~p~l~~w~~~~~~~~~p~~~~~~~~ 122 (126)
T cd03183 82 CEIMQPEAAGY-D-VFEGRPKLAAWRKRVKEAGNPLFDEAHKI 122 (126)
T ss_pred HHHHHHHhcCC-c-ccccCchHHHHHHHHHHhcchhHHHHHHH
Confidence 88876643221 1 24789999999999999 9999998764
No 20
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.82 E-value=3.4e-19 Score=104.95 Aligned_cols=106 Identities=17% Similarity=0.223 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCChhhhhh
Q 042826 24 IEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDVYEERLSKSNYLAGDFFSLADLSH 103 (146)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aD~~~ 103 (146)
|.+|++++.|+.++...+.+.+..... + .++..+.....+.+.++.+|++|++++|++|+++|+|||++
T Consensus 1 p~~ra~~r~w~~~~~~~~~~~~~~~~~-----~------~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~ 69 (107)
T cd03186 1 PVARARSRLLMHRIEQDWYPLVDTIEK-----G------RKKEAEKARKELRESLLALAPVFAHKPYFMSEEFSLVDCAL 69 (107)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHh-----C------cHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCcHHHHHH
Confidence 357999999999998877776644321 1 14445667888999999999999999999999999999999
Q ss_pred hhHHHHhhCCccchhhhhcchHHHHHHHHhcCChhHHHH
Q 042826 104 LPFTQYLVGPMEKEYMIRDRKHVSAWWDDISNRPSWKKV 142 (146)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~~p~~~~~ 142 (146)
++.+.++.... .. ....+|+|.+|+++|.+||+++++
T Consensus 70 ~~~~~~~~~~~-~~-~~~~~p~l~~w~~~~~~rpa~~~~ 106 (107)
T cd03186 70 APLLWRLPALG-IE-LPKQAKPLKDYMERVFARDSFQKS 106 (107)
T ss_pred HHHHHHHHHcC-CC-CcccchHHHHHHHHHHCCHHHHHh
Confidence 98876543221 11 124799999999999999999975
No 21
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.81 E-value=4.6e-19 Score=104.81 Aligned_cols=109 Identities=19% Similarity=0.324 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCChhhhhhhh
Q 042826 26 ERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDVYEERLSKSNYLAGDFFSLADLSHLP 105 (146)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aD~~~~~ 105 (146)
+|+++++|+.+..+.+.+.+...+......+ .....+...+...+.+.+.++.+|++|++++|++|+++|+||+++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~l~g~~~t~aDi~~~~ 79 (110)
T cd03180 2 ARARADRWMDWQTSTLNPAFRYAFWGLVRTP--PEQRDPAAIAASLAAWAKLMAILDAQLAGRPYLAGDRFTLADIPLGC 79 (110)
T ss_pred chhHHHHHHHHHHhhcChHHHHHHHHHHcCC--cccCCHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHH
Confidence 5789999999999999988766543322211 12345666777888999999999999999999999999999999988
Q ss_pred HHHHhhCCccchhhhhcchHHHHHHHHhcCChhH
Q 042826 106 FTQYLVGPMEKEYMIRDRKHVSAWWDDISNRPSW 139 (146)
Q Consensus 106 ~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~~p~~ 139 (146)
++..+... ....+.+|+|.+|+++|.++|++
T Consensus 80 ~~~~~~~~---~~~~~~~p~l~~~~~~~~~~p~~ 110 (110)
T cd03180 80 SAYRWFEL---PIERPPLPHLERWYARLRARPAF 110 (110)
T ss_pred HHHHHHHc---ccccccCchHHHHHHHHHhCCCC
Confidence 87543322 12457899999999999999975
No 22
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=99.81 E-value=5.5e-19 Score=106.52 Aligned_cols=116 Identities=27% Similarity=0.371 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCChhhhhhhh
Q 042826 26 ERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDVYEERLSKSNYLAGDFFSLADLSHLP 105 (146)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aD~~~~~ 105 (146)
+|+++++|+.|.+..+.+.+...+.... . ..+.+....+.....+.+.++.+|+.|++++|++|+++|+||+++++
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~siaDi~l~~ 76 (123)
T cd03181 1 EEAQVLQWVSFANTELLPAVAAWFLPLL-G---IAPYNKKSVEAALEELDRVLGVLEERLLKRTYLVGERLTLADIFVAG 76 (123)
T ss_pred ChHHHHHHHHHHHhhhHHHHHHHHHHHc-C---ccCCCHHHHHHHHHHHHHHHHHHHHHHccCceeccCCccHHHHHHHH
Confidence 4788999999999999887765443321 1 12344566778889999999999999999999999999999999998
Q ss_pred HHHHhhCCccchhhhhcchHHHHHHHHhcCChhHHHHHhh
Q 042826 106 FTQYLVGPMEKEYMIRDRKHVSAWWDDISNRPSWKKVLEL 145 (146)
Q Consensus 106 ~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~~p~~~~~~~~ 145 (146)
.+.+.............+|++.+|++++.++|+++++++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 116 (123)
T cd03181 77 ALLLGFTYVFDKEWRAKYPNVTRWFNTVVNQPIFKAVFGE 116 (123)
T ss_pred HHHHHHHHHcCHHHHHhChHHHHHHHHHHcCHHHHHHcCC
Confidence 8887642211111246899999999999999999998765
No 23
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=8.4e-19 Score=112.82 Aligned_cols=133 Identities=29% Similarity=0.316 Sum_probs=98.2
Q ss_pred ChhHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHH-HHHHHHHHHHH
Q 042826 1 SRAIIRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVK-KSEEKLGKVLD 79 (146)
Q Consensus 1 S~aI~~yL~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ 79 (146)
|.||++||+++| .+.|+++.|.++++...+-..+.... ++......+..| ..+...+ .......+.+.
T Consensus 65 S~AI~RyLArk~-----gl~Gkt~~E~a~vD~i~d~~~D~~~~----~~~~~~~~~~~g--~~~~~~~~~~~Pa~~~~~~ 133 (206)
T KOG1695|consen 65 SRAILRYLARKF-----GLAGKTEEEEAWVDMIVDQFKDFRWE----IFRQPYTAPEAG--KSEEELDKLYLPAKPKYFK 133 (206)
T ss_pred HHHHHHHHHHHh-----CcCCCCHHHHHHHHHHHHhhhhHHHH----HHHHhhhhhhhc--cchhhhhhhhccchHHHHH
Confidence 789999999999 49999999999999888765442222 122222222211 2222222 56677888999
Q ss_pred HHHHHhc--CCCcccCCCCChhhhhhhhHHHHhhCCccchhhhhcchHHHHHHHHhcCChhHHHHHhh
Q 042826 80 VYEERLS--KSNYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIRDRKHVSAWWDDISNRPSWKKVLEL 145 (146)
Q Consensus 80 ~le~~l~--~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~~p~~~~~~~~ 145 (146)
.+++.|+ ++.|++||++|+||+.++..+..+..... ......+|+|+++.+||.++|.++++++.
T Consensus 134 ~~~~~L~~~~sgflvGd~lT~aDl~i~e~l~~l~~~~~-~~~~~~~P~L~a~~~kv~~~p~ik~~i~~ 200 (206)
T KOG1695|consen 134 ILEKILKKNKSGFLVGDKLTWADLVIAEHLDTLEELLD-PSALDHFPKLKAFKERVSSIPNIKKYLES 200 (206)
T ss_pred HHHHHHHhCCCCeeecCcccHHHHHHHHHHHHHHHhcC-chhhccChHHHHHHHHHhcCchHHHHHhc
Confidence 9999998 45799999999999999998888764311 21356789999999999999999999863
No 24
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=99.81 E-value=7e-19 Score=105.80 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHhc--CCCcccCCCCChhhh
Q 042826 24 IEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDVYEERLS--KSNYLAGDFFSLADL 101 (146)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~--~~~~l~G~~~t~aD~ 101 (146)
|.+++++++|+.+..+.+.+.+........ .+..+. ..+...+...+.+.+.++.+|++|+ +++|++|+++|+|||
T Consensus 1 p~~ra~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi 78 (121)
T cd03191 1 PKKRARVRALALIIACDIHPLNNLRVLKYL-TEELGL-DEEAKNAWYRHWIARGFAALEKLLAQTAGKFCFGDEPTLADI 78 (121)
T ss_pred ChhHHHHHHHHHHHHccCCccccHHHHHHH-HHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecCCcCCHHHH
Confidence 357999999999999888876433322221 111011 1233334456678999999999998 458999999999999
Q ss_pred hhhhHHHHhhCCccchhhhhcchHHHHHHHHhcCChhHHHHHh
Q 042826 102 SHLPFTQYLVGPMEKEYMIRDRKHVSAWWDDISNRPSWKKVLE 144 (146)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~~p~~~~~~~ 144 (146)
++++.+.++... ......+|+|.+|+++|.++|++++++.
T Consensus 79 ~~~~~~~~~~~~---~~~~~~~p~l~~w~~~~~~~p~~~~~~~ 118 (121)
T cd03191 79 CLVPQVYNARRF---GVDLSPYPTIARINEACLELPAFQAAHP 118 (121)
T ss_pred HHHHHHHHHHHh---CCCcccCcHHHHHHHHHHhChhHHHhCc
Confidence 999988765432 2235789999999999999999999764
No 25
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=99.80 E-value=7.8e-19 Score=104.97 Aligned_cols=115 Identities=23% Similarity=0.277 Sum_probs=89.1
Q ss_pred CHHHHHHHHHHHHHhhhccChHHHHHHHHHHh-hcc-CCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCChhh
Q 042826 23 TIEERGLVEQWLEVEAHNYHPPIYEMTVQLLF-ASK-LGLSVDEKLVKKSEEKLGKVLDVYEERLSKSNYLAGDFFSLAD 100 (146)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aD 100 (146)
++.+++++++|+.|++..+.+++...+..... .+. .+....+...+.....+.+.++.+|++|++++|++|+++|+||
T Consensus 1 d~~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~gd~~t~aD 80 (117)
T cd03182 1 TPLERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLAGSPYVAGDRFTIAD 80 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHH
Confidence 46789999999999988888776655432211 110 0123456777888899999999999999988999999999999
Q ss_pred hhhhhHHHHhhCCccchhhhhcchHHHHHHHHhcCChhH
Q 042826 101 LSHLPFTQYLVGPMEKEYMIRDRKHVSAWWDDISNRPSW 139 (146)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~~p~~ 139 (146)
|++++.+.++..... . ....+|+|.+|+++|.++|++
T Consensus 81 i~l~~~~~~~~~~~~-~-~~~~~p~l~~w~~~~~~~p~~ 117 (117)
T cd03182 81 ITAFVGLDFAKVVKL-R-VPEELTHLRAWYDRMAARPSA 117 (117)
T ss_pred HHHHHHhHHHHhcCC-C-CccccHHHHHHHHHHHhccCC
Confidence 999999987653321 1 136899999999999999974
No 26
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.80 E-value=4.6e-19 Score=107.27 Aligned_cols=110 Identities=18% Similarity=0.249 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCChhhhhh
Q 042826 24 IEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDVYEERLSKSNYLAGDFFSLADLSH 103 (146)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aD~~~ 103 (146)
|.+|+++++|+.+....+.+.+...+. + .+...+.....+.+.++.+|++|++++|++|+++|+|||++
T Consensus 1 p~~ra~~~~w~~~~~~~~~~~~~~~~~-----~------~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l 69 (126)
T cd03185 1 PYERAVARFWAAFIDDKLFPAGRKVLA-----A------KGEEREKAKEEALEALKVLEEELGGKPFFGGDTIGYVDIAL 69 (126)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHc-----c------chHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHH
Confidence 357999999999998887776544321 1 13344567788999999999999989999999999999999
Q ss_pred hhHHHHhhCCc---cch-hhhhcchHHHHHHHHhcCChhHHHHHh
Q 042826 104 LPFTQYLVGPM---EKE-YMIRDRKHVSAWWDDISNRPSWKKVLE 144 (146)
Q Consensus 104 ~~~l~~~~~~~---~~~-~~~~~~p~l~~~~~r~~~~p~~~~~~~ 144 (146)
++++.++.... ..+ ...+.+|++.+|+++|+++|++++++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~ 114 (126)
T cd03185 70 GSFLGWFRAYEEVGGVKLLDEEKTPLLAAWAERFLELEAVKEVLP 114 (126)
T ss_pred HHHHHHHHHHHHHcCccccCcccCchHHHHHHHHHhccHHHHhCC
Confidence 99888764211 111 124679999999999999999998864
No 27
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.7e-18 Score=106.68 Aligned_cols=133 Identities=19% Similarity=0.187 Sum_probs=107.0
Q ss_pred ChhHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHH
Q 042826 1 SRAIIRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDV 80 (146)
Q Consensus 1 S~aI~~yL~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (146)
|.||++||++++|+ ++|+|+++..|+.+++....+.+.+.|.....+.... +++.......-....+.+.+..
T Consensus 71 S~AII~YLeEt~P~--ppLLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l-----~ek~~~~~~~W~q~~ItkGF~A 143 (217)
T KOG0868|consen 71 SLAIIEYLEETYPD--PPLLPKDPHKRAKARAISLLIASGIQPLQNLSVLKML-----NEKEPGYGDQWAQHFITKGFTA 143 (217)
T ss_pred HHHHHHHHHhcCCC--CCCCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHh-----cccccchhhHHHHHHHHHhHHH
Confidence 68999999999964 8899999999999999999999999886544332221 2222322245567778899999
Q ss_pred HHHHhcC--CCcccCCCCChhhhhhhhHHHHhhCCccchhhhhcchHHHHHHHHhcCChhHHHHH
Q 042826 81 YEERLSK--SNYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIRDRKHVSAWWDDISNRPSWKKVL 143 (146)
Q Consensus 81 le~~l~~--~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~~p~~~~~~ 143 (146)
+|..|.. +.|-+||++|+||+++.+.+.... ....+++.||.+.+..+.+.+.|.|+.++
T Consensus 144 LEklL~~~aGkycvGDevtiADl~L~pqv~nA~---rf~vdl~PYPti~ri~e~l~elpaFq~ah 205 (217)
T KOG0868|consen 144 LEKLLKSHAGKYCVGDEVTIADLCLPPQVYNAN---RFHVDLTPYPTITRINEELAELPAFQAAH 205 (217)
T ss_pred HHHHHHHccCCcccCceeehhhhccchhhhhhh---hccccCCcCchHHHHHHHHHhCHHHHhcC
Confidence 9999975 789999999999999999988753 22347899999999999999999999764
No 28
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.80 E-value=1.6e-18 Score=106.90 Aligned_cols=110 Identities=20% Similarity=0.240 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCChhhhhhh
Q 042826 25 EERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDVYEERLSKSNYLAGDFFSLADLSHL 104 (146)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aD~~~~ 104 (146)
+.|+++++|++|....+.+.+.... ...+++..+.....+.+.++.+|++|++++|++|+++|+|||+++
T Consensus 3 ~~~a~i~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~l~~LE~~L~~~~yl~Gd~~TlADi~l~ 72 (142)
T cd03190 3 ELRSEIDELNEWIYDNINNGVYKAG----------FATTQEAYDEAVDELFEALDRLEELLSDRRYLLGDRLTEADIRLF 72 (142)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHh----------hccCHHHHHHHHHHHHHHHHHHHHHHccCCeeeCCCccHHHHHHH
Confidence 3588899999999888776543211 123455667788899999999999999999999999999999999
Q ss_pred hHHHHhhCCc----c-chhhhhcchHHHHHHHHhcCChhHHHHHh
Q 042826 105 PFTQYLVGPM----E-KEYMIRDRKHVSAWWDDISNRPSWKKVLE 144 (146)
Q Consensus 105 ~~l~~~~~~~----~-~~~~~~~~p~l~~~~~r~~~~p~~~~~~~ 144 (146)
+++.++.... . .....+.+|+|.+|+++|.++|+++++..
T Consensus 73 ~~l~~~~~~~~~~~~~~~~~~~~~P~L~~w~~r~~~~P~~k~~~~ 117 (142)
T cd03190 73 TTLIRFDAVYVQHFKCNLKRIRDYPNLWNYLRRLYQNPGVAETTN 117 (142)
T ss_pred HHHHHHHHHhhhhcccccchhhhCchHHHHHHHHhcCchHhhhcC
Confidence 8887653211 1 11134689999999999999999998764
No 29
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=99.78 E-value=2e-18 Score=103.37 Aligned_cols=109 Identities=24% Similarity=0.377 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCChhhhhhhh
Q 042826 26 ERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDVYEERLSKSNYLAGDFFSLADLSHLP 105 (146)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aD~~~~~ 105 (146)
+++++++|+.|....+.+.+...+....+.. . ...+.....+.+.++.+|++|++++|++|+++|+||+++++
T Consensus 2 ~~a~~~~wl~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~aDi~l~~ 74 (118)
T cd03177 2 KRAIVNQRLHFDSGTLYQRLRDYYYPILFGG---A----EPPEEKLDKLEEALDFLETFLEGSDYVAGDQLTIADLSLVA 74 (118)
T ss_pred hHHHHHHHHHhhhchHHHHHHHHHHHHHHcC---C----CCCHHHHHHHHHHHHHHHHHHccCCeeCCCCcCHHHHHHHH
Confidence 6889999999998888877655444332211 1 12345667889999999999998899999999999999999
Q ss_pred HHHHhhCCccchhhhhcchHHHHHHHHhcCChhHHHHH
Q 042826 106 FTQYLVGPMEKEYMIRDRKHVSAWWDDISNRPSWKKVL 143 (146)
Q Consensus 106 ~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~~p~~~~~~ 143 (146)
++.++... .......+|+|.+|+++|.++|++++..
T Consensus 75 ~~~~~~~~--~~~~~~~~p~l~~w~~~~~~~p~~~~~~ 110 (118)
T cd03177 75 TVSTLEAL--LPLDLSKYPNVRAWLERLKALPPYEEAN 110 (118)
T ss_pred HHHHHHHh--cCCChhhCchHHHHHHHHHcccchHHHH
Confidence 99887531 1223567999999999999999999864
No 30
>PRK10387 glutaredoxin 2; Provisional
Probab=99.78 E-value=8.9e-19 Score=114.70 Aligned_cols=128 Identities=15% Similarity=0.149 Sum_probs=85.2
Q ss_pred ChhHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHhhccC---------------CCCCCH-
Q 042826 1 SRAIIRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKL---------------GLSVDE- 64 (146)
Q Consensus 1 S~aI~~yL~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~- 64 (146)
|.+|++||+++||+ +.+ +. .+++++++|+.+....+...+...+.... .+.. .....+
T Consensus 62 S~aI~~yL~~~~~~--~~l-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (210)
T PRK10387 62 SLDIVHYIDELDGK--PLL-TG--KRSPAIEEWLRKVFGYLNKLLYPRFAKAD-LPEFATPSARQYFIDKKEASIGDFDA 135 (210)
T ss_pred HHHHHHHHHHhCCC--ccC-CC--cccHHHHHHHHHHHHHhhcchhcccccCC-CcccCCHHHHHHHHHhHHhccCCHHH
Confidence 68999999999963 333 32 26788888988765444332211110000 0000 000001
Q ss_pred --HHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCChhhhhhhhHHHHhhCCccchhhhhcchHHHHHHHHhcCChhH
Q 042826 65 --KLVKKSEEKLGKVLDVYEERLSKSNYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIRDRKHVSAWWDDISNRPSW 139 (146)
Q Consensus 65 --~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~~p~~ 139 (146)
...+...+.+.+.++.+|++|++ +|++|+++|+||+++++++.++..... ...+|+|.+|++||.+||++
T Consensus 136 ~~~~~~~~~~~~~~~l~~le~~L~~-~~l~G~~~s~ADi~l~~~l~~~~~~~~----~~~~p~l~~w~~r~~~r~~~ 207 (210)
T PRK10387 136 LLAHTPGLIKEINADLRALDPLIVK-PNAVNGELSTDDIHLFPILRNLTLVKG----IEWPPRVADYRDNMSKKTQV 207 (210)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHhcC-ccccCCCCCHHHHHHHHHHhcceeecC----CCCCHHHHHHHHHHHHHhCC
Confidence 01134567889999999999987 999999999999999999988754321 23469999999999999986
No 31
>PLN02907 glutamate-tRNA ligase
Probab=99.76 E-value=7.4e-18 Score=126.01 Aligned_cols=107 Identities=17% Similarity=0.253 Sum_probs=84.2
Q ss_pred ChhHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHH
Q 042826 1 SRAIIRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDV 80 (146)
Q Consensus 1 S~aI~~yL~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (146)
|.||++||++.++ +..|+|.++.+++++++|+.+..... + . ..+...++.
T Consensus 52 S~AIl~YLa~~~p--~~~L~p~d~~erAqV~qWL~~~~~~~--------------~-------~-------~~l~~~L~~ 101 (722)
T PLN02907 52 TNVLLRYIARSAS--LPGFYGQDAFESSQVDEWLDYAPTFS--------------S-------G-------SEFENACEY 101 (722)
T ss_pred HHHHHHHHHHhCC--CcCCCCCCHHHHHHHHHHHHHHhhcc--------------c-------H-------HHHHHHHHH
Confidence 6799999999995 35699999999999999998864311 0 0 124567899
Q ss_pred HHHHhcCCCcccCCCCChhhhhhhhHHHHhh-CCccchhhhhcchHHHHHHHHhcCChh
Q 042826 81 YEERLSKSNYLAGDFFSLADLSHLPFTQYLV-GPMEKEYMIRDRKHVSAWWDDISNRPS 138 (146)
Q Consensus 81 le~~l~~~~~l~G~~~t~aD~~~~~~l~~~~-~~~~~~~~~~~~p~l~~~~~r~~~~p~ 138 (146)
+|.+|++++|++|+++|+|||++++.+.... ...... ....+|+|.+|+++|.++|+
T Consensus 102 LE~~L~~rtYLvGd~lTLADIaL~~~L~~~~~~~~~~~-~~~~yPnL~RW~erI~arPs 159 (722)
T PLN02907 102 VDGYLASRTFLVGYSLTIADIAIWSGLAGSGQRWESLR-KSKKYQNLVRWFNSISAEYS 159 (722)
T ss_pred HHHHhccCCeecCCCCCHHHHHHHHHHHhhhhhhhccc-ccccCHHHHHHHHHHHhCCC
Confidence 9999999999999999999999998875541 111111 24689999999999999999
No 32
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.76 E-value=1.5e-17 Score=109.94 Aligned_cols=125 Identities=16% Similarity=0.153 Sum_probs=85.5
Q ss_pred ChhHHHHHHHHhccC-CCCCCCCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHH
Q 042826 1 SRAIIRYYAEKYRSQ-GTELLGKTIEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLD 79 (146)
Q Consensus 1 S~aI~~yL~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (146)
|.+|++||+++++.+ .+.+.|.++..+..... +...+..++ . + ..+...+.....+.+.++
T Consensus 72 S~aI~eYL~e~~~~~~~p~l~p~~~~~~~~~~~--------l~~~~~~~~------~--~--~~~~~~~~~~~~l~~~l~ 133 (236)
T TIGR00862 72 VNKIEEFLEETLCPPRYPKLSPKHPESNTAGLD--------IFAKFSAYI------K--N--SNPEANDNLEKGLLKALK 133 (236)
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHH--------HHHHHHHHH------H--c--CCHHHHHHHHHHHHHHHH
Confidence 689999999999631 13455655544332211 111121111 1 1 122333445566888999
Q ss_pred HHHHHhc------------------CCCcccCCCCChhhhhhhhHHHHhhCCc--cchhh-hhcchHHHHHHHHhcCChh
Q 042826 80 VYEERLS------------------KSNYLAGDFFSLADLSHLPFTQYLVGPM--EKEYM-IRDRKHVSAWWDDISNRPS 138 (146)
Q Consensus 80 ~le~~l~------------------~~~~l~G~~~t~aD~~~~~~l~~~~~~~--~~~~~-~~~~p~l~~~~~r~~~~p~ 138 (146)
.+|++|. +++|+.|+++|+|||++++.+.++.... ..+++ .+++|+|.+|++++.++|+
T Consensus 134 ~Le~~L~~~~~~~~~~~~~~~~~~~~~~f~~Gd~~tlaD~~l~p~l~~l~~~~~~~~~~~i~~~~p~l~~w~~~~~~~~s 213 (236)
T TIGR00862 134 KLDDYLNSPLPEEIDEDSAEDEKVSRRKFLDGDELTLADCNLLPKLHIVKVVAKKYRNFDIPAEFTGVWRYLSNAYAREE 213 (236)
T ss_pred HHHHHHhccccccccccccccccccCCCcccCCccchhhHHHHHHHHHHHHHHHHHhCcCccccCchHHHHHHHHhccch
Confidence 9999986 5799999999999999999998886421 22334 5889999999999999999
Q ss_pred HHHHH
Q 042826 139 WKKVL 143 (146)
Q Consensus 139 ~~~~~ 143 (146)
|+++.
T Consensus 214 f~~t~ 218 (236)
T TIGR00862 214 FTNTC 218 (236)
T ss_pred HHhhC
Confidence 99864
No 33
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=99.75 E-value=4.6e-17 Score=97.90 Aligned_cols=108 Identities=14% Similarity=0.112 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCChhhhhhhh
Q 042826 26 ERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDVYEERLSKSNYLAGDFFSLADLSHLP 105 (146)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aD~~~~~ 105 (146)
+++++++.++.+.+ +...+..++ +.+ ..+...+.....+.+.++.+|++|++++|++|+++|+||+++++
T Consensus 2 e~~~id~~~~~~~d-~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~aDi~l~~ 71 (121)
T cd03209 2 ERIRVDMLEQQAMD-LRMGLARIC----YSP-----DFEKLKPDYLAKLPDKLKLFSDFLGDRPWFAGDKITYVDFLLYE 71 (121)
T ss_pred chHHHHHHHHHHHH-HHHHHHHhh----cCc-----chHHHHHHHHHHHHHHHHHHHHHhCCCCCcCCCCccHHHHHHHH
Confidence 56777777776544 222222221 211 22455566788899999999999998999999999999999999
Q ss_pred HHHHhhCCccchhhhhcchHHHHHHHHhcCChhHHHHHhh
Q 042826 106 FTQYLVGPMEKEYMIRDRKHVSAWWDDISNRPSWKKVLEL 145 (146)
Q Consensus 106 ~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~~p~~~~~~~~ 145 (146)
++.++..... ...+.+|+|.+|++||.++|+++++++.
T Consensus 72 ~~~~~~~~~~--~~~~~~P~l~~~~~rv~~~p~vk~~~~~ 109 (121)
T cd03209 72 ALDQHRIFEP--DCLDAFPNLKDFLERFEALPKISAYMKS 109 (121)
T ss_pred HHHHHHHhCc--cccccChHHHHHHHHHHHCHHHHHHHhc
Confidence 9888764221 1357899999999999999999999863
No 34
>PLN02378 glutathione S-transferase DHAR1
Probab=99.75 E-value=6.2e-18 Score=110.96 Aligned_cols=121 Identities=25% Similarity=0.244 Sum_probs=82.5
Q ss_pred ChhHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHH
Q 042826 1 SRAIIRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDV 80 (146)
Q Consensus 1 S~aI~~yL~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (146)
|.+|++||++++++ ..+ .++.+++++...+. ..+..+. .. .. .. +.....+.+.++.
T Consensus 73 S~aI~~YL~~~~~~--~~l--~~~~~~a~i~~~~~-------~~~~~~~-----~~---~~-~~---~~~~~~~~~~l~~ 129 (213)
T PLN02378 73 SDVIVGILEEKYPD--PPL--KTPAEFASVGSNIF-------GTFGTFL-----KS---KD-SN---DGSEHALLVELEA 129 (213)
T ss_pred HHHHHHHHHHhCCC--CCC--CCHHHHHHHHHHHH-------HHHHHHH-----hc---CC-hh---hHHHHHHHHHHHH
Confidence 78999999999963 334 35667776654332 1111111 11 01 11 1233567788999
Q ss_pred HHHHhc--CCCcccCCCCChhhhhhhhHHHHhhCCcc--chh-hhhcchHHHHHHHHhcCChhHHHHHh
Q 042826 81 YEERLS--KSNYLAGDFFSLADLSHLPFTQYLVGPME--KEY-MIRDRKHVSAWWDDISNRPSWKKVLE 144 (146)
Q Consensus 81 le~~l~--~~~~l~G~~~t~aD~~~~~~l~~~~~~~~--~~~-~~~~~p~l~~~~~r~~~~p~~~~~~~ 144 (146)
+|++|+ +++|++|+++|+||+++++++.++..... ..+ ..+.+|+|.+|+++|.++|++++++.
T Consensus 130 le~~L~~~~~~fl~Gd~~T~ADi~l~~~~~~l~~~~~~~~~~~~~~~~p~l~~w~~~~~~rpa~~~~~~ 198 (213)
T PLN02378 130 LENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQVALGHFKSWSVPESFPHVHNYMKTLFSLDSFEKTKT 198 (213)
T ss_pred HHHHHhcCCCCCcCCCCCchhhHHHHHHHHHHHHHHHHhcCCCchhHhHHHHHHHHHHhcCCCeecccC
Confidence 999997 47999999999999999999877542111 111 23689999999999999999997653
No 35
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=99.75 E-value=4.7e-17 Score=99.76 Aligned_cols=76 Identities=25% Similarity=0.293 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHhc--CCCcccCCCCChhhhhhhhHHHHhhCCccchhhhhcchHHHHHHHHhcCChhHHHHHhh
Q 042826 68 KKSEEKLGKVLDVYEERLS--KSNYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIRDRKHVSAWWDDISNRPSWKKVLEL 145 (146)
Q Consensus 68 ~~~~~~~~~~l~~le~~l~--~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~~p~~~~~~~~ 145 (146)
+.....+.+.++.+|++|+ +++|++|+++|+||+++++.+.++.... ...++.+|+|.+|++||.++|+++++++.
T Consensus 38 ~~~~~~~~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~l~~~l~~~~~~~--~~~l~~~P~l~~~~~rv~~~P~vk~~~~~ 115 (137)
T cd03208 38 LIKEKAKNRYFPVFEKVLKSHGQDFLVGNKLSRADIHLLEAILMVEELD--PSLLSDFPLLQAFKTRISNLPTIKKFLQP 115 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCeeeCCCCCHHHHHHHHHHHHHHHhc--hhhhccChHHHHHHHHHHcCHHHHHHHhc
Confidence 4445567899999999998 6789999999999999999998875322 12357899999999999999999999863
No 36
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.74 E-value=1.1e-17 Score=100.94 Aligned_cols=106 Identities=19% Similarity=0.288 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHhcC--CCcccCCCCChhhhhh
Q 042826 26 ERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDVYEERLSK--SNYLAGDFFSLADLSH 103 (146)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~--~~~l~G~~~t~aD~~~ 103 (146)
+|++.+.|+.+++ .+.+.+...+. . ++..+...+.+...++.+|+.|++ ++|++|+++|+||+++
T Consensus 2 ~ra~~r~~~~~~~-~~~~~~~~~~~----~--------~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~ 68 (124)
T cd03184 2 EKAQQKLLLERFS-KVVSAFYKLLG----A--------PSDREEKKAELRSALENLEEELTKRGTPFFGGDSPGMVDYMI 68 (124)
T ss_pred hHHHHHHHHHHHh-hhhHHHHHHHh----c--------cccchhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccHHHHHh
Confidence 5889999999886 44333333221 1 222245677888889999999985 8999999999999999
Q ss_pred hhHHHHhhCCccc---hhhhhcchHHHHHHHHhcCChhHHHHHh
Q 042826 104 LPFTQYLVGPMEK---EYMIRDRKHVSAWWDDISNRPSWKKVLE 144 (146)
Q Consensus 104 ~~~l~~~~~~~~~---~~~~~~~p~l~~~~~r~~~~p~~~~~~~ 144 (146)
++++.++...... ....+.+|+|.+|+++|.++|++++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~v~~~~~ 112 (124)
T cd03184 69 WPWFERLEALKLLLGYEFPLDRFPKLKKWMDAMKEDPAVQAFYT 112 (124)
T ss_pred hHHHHHHHHHHhhccccCCcccChHHHHHHHHhccChHHHHHhC
Confidence 9998776533211 1245789999999999999999999864
No 37
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.73 E-value=1.6e-17 Score=97.15 Aligned_cols=101 Identities=21% Similarity=0.315 Sum_probs=78.9
Q ss_pred HHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCChhhhhhhhHHHHh
Q 042826 31 EQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDVYEERLSKSNYLAGDFFSLADLSHLPFTQYL 110 (146)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aD~~~~~~l~~~ 110 (146)
++|+.|..+.+.+.+..... +. .+...+.....+.+.++.+|.+|++++|++|+++|+|||++++.+.++
T Consensus 2 ~~w~~~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~~~~~l~~le~~l~~~~~l~g~~~t~aDi~~~~~~~~~ 71 (103)
T cd03207 2 LRWLFFYAGVVEPALIAKAM-----GI-----EEPARMAGFGSYDDVLAALEQALAKGPYLLGERFTAADVLVGSPLGWG 71 (103)
T ss_pred eeeeeeccccccHHHHHHHc-----CC-----CcchhhhhhhhHHHHHHHHHHHHccCCcccCCccCHHHHHHHHHHHHH
Confidence 35677777777776554321 11 122345567889999999999999999999999999999999998887
Q ss_pred hCCccchhhhhcchHHHHHHHHhcCChhHHHHHhh
Q 042826 111 VGPMEKEYMIRDRKHVSAWWDDISNRPSWKKVLEL 145 (146)
Q Consensus 111 ~~~~~~~~~~~~~p~l~~~~~r~~~~p~~~~~~~~ 145 (146)
... . ....+|+|.+|+++|.++|++++++++
T Consensus 72 ~~~---~-~~~~~p~l~~w~~~~~~~p~~~~~~~~ 102 (103)
T cd03207 72 LQF---G-LLPERPAFDAYIARITDRPAFQRAAAI 102 (103)
T ss_pred HHc---C-CCCCChHHHHHHHHHHcCHHHHHHhcc
Confidence 533 2 246899999999999999999999875
No 38
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.73 E-value=1.6e-17 Score=98.90 Aligned_cols=112 Identities=21% Similarity=0.183 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHhc-CCCcccCCCCChhhhh
Q 042826 24 IEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDVYEERLS-KSNYLAGDFFSLADLS 102 (146)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~-~~~~l~G~~~t~aD~~ 102 (146)
|.+|+++++|+.|..+.+.+..........+.+ ...+...+...+.+.+.++.+|.+|+ +++|++| ++|+||++
T Consensus 1 ~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~l~G-~fSiAD~~ 75 (114)
T cd03195 1 PRQRARARQVQAWLRSDLLPIRVERSTEVVFAG----AKAEPLSEAAQAAAEKLIAVAEALLPPGAANLFG-EWCIADTD 75 (114)
T ss_pred CHhhHHHHHHHHHHHhhHHHHHHhCCccceecC----CCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcccC-CccHHHHH
Confidence 458999999999999988765111110110111 11112334567777888999999995 5589999 59999999
Q ss_pred hhhHHHHhhCCccchhhhhcchHHHHHHHHhcCChhHHHHHhh
Q 042826 103 HLPFTQYLVGPMEKEYMIRDRKHVSAWWDDISNRPSWKKVLEL 145 (146)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~~p~~~~~~~~ 145 (146)
+++.+.+.... ++++. |++.+|.+||.+||+|+++++.
T Consensus 76 l~~~~~~~~~~---g~~l~--p~l~ay~~r~~~rPa~~~~~~~ 113 (114)
T cd03195 76 LALMLNRLVLN---GDPVP--ERLRDYARRQWQRPSVQAWLAL 113 (114)
T ss_pred HHHHHHHHHHc---CCCCC--HHHHHHHHHHHCCHHHHHHHhc
Confidence 99999887643 22343 9999999999999999999863
No 39
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.73 E-value=3.1e-17 Score=110.45 Aligned_cols=121 Identities=21% Similarity=0.244 Sum_probs=84.1
Q ss_pred ChhHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHH
Q 042826 1 SRAIIRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDV 80 (146)
Q Consensus 1 S~aI~~yL~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (146)
|.+|++||++++|+ +.+ .++.+++++..|+... +..+ +.. ....+ ...+.+.+.++.
T Consensus 126 S~aI~~YL~e~~p~--~~L--~~~~era~i~~~l~~~-------~~~~-----~~~---~~~~~----~~~~~l~~~l~~ 182 (265)
T PLN02817 126 SDVITQALEEKYPD--PPL--ATPPEKASVGSKIFST-------FIGF-----LKS---KDPGD----GTEQALLDELTS 182 (265)
T ss_pred HHHHHHHHHHHCCC--CCC--CCHHHHHHHHHHHHHH-------HHHH-----hcc---CCcch----HHHHHHHHHHHH
Confidence 67999999999964 344 3577888887764311 1111 111 11111 123456777899
Q ss_pred HHHHhcC-CCcccCCCCChhhhhhhhHHHHhhCCcc--chh-hhhcchHHHHHHHHhcCChhHHHHHh
Q 042826 81 YEERLSK-SNYLAGDFFSLADLSHLPFTQYLVGPME--KEY-MIRDRKHVSAWWDDISNRPSWKKVLE 144 (146)
Q Consensus 81 le~~l~~-~~~l~G~~~t~aD~~~~~~l~~~~~~~~--~~~-~~~~~p~l~~~~~r~~~~p~~~~~~~ 144 (146)
+|++|++ ++|++|+++|+||+++++.+.++..... .++ ..+.+|+|.+|+++|.++|+++++..
T Consensus 183 LE~~L~~~g~yl~Gd~~SlADi~l~p~L~~l~~~~~~~~~~~i~~~~P~L~~w~~ri~~rps~~~~~~ 250 (265)
T PLN02817 183 FDDYIKENGPFINGEKISAADLSLGPKLYHLEIALGHYKNWSVPDSLPFVKSYMKNIFSMESFVKTRA 250 (265)
T ss_pred HHHHHhcCCCeeCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHhcchhHhhcCC
Confidence 9999974 7999999999999999999877643211 111 23689999999999999999998754
No 40
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.72 E-value=2.8e-17 Score=96.40 Aligned_cols=104 Identities=23% Similarity=0.353 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCChhhhhhhh
Q 042826 26 ERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDVYEERLSKSNYLAGDFFSLADLSHLP 105 (146)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aD~~~~~ 105 (146)
+|+++++|+.+..+.+.+.+........+.+ .....++..+.....+.+.++.+|+.|++++|++|+++|+|||++++
T Consensus 2 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~g~~~slaDi~~~~ 79 (105)
T cd03179 2 ERAQVLRWLFFEQYSHEPYIATLRFLRVYLG--LGEADAEVLAFLRERGHAALAVLEAHLAGRDFLVGDALTIADIALAA 79 (105)
T ss_pred cHHHHHHHHHHhhcccCccceeeeeeEeecc--CCCCCHHHHHHHHHHHHHHHHHHHHHHccCccccCCCCCHHHHHHHH
Confidence 6899999999988888887654433222222 12345667778899999999999999998899999999999999999
Q ss_pred HHHHhhCCccchhhhhcchHHHHHHHHhc
Q 042826 106 FTQYLVGPMEKEYMIRDRKHVSAWWDDIS 134 (146)
Q Consensus 106 ~l~~~~~~~~~~~~~~~~p~l~~~~~r~~ 134 (146)
++.++... ......+|+|.+|+++++
T Consensus 80 ~~~~~~~~---~~~~~~~p~l~~~~~~~~ 105 (105)
T cd03179 80 YTHVADEG---GFDLADYPAIRAWLARIE 105 (105)
T ss_pred HHHhcccc---CCChHhCccHHHHHHhhC
Confidence 99886532 223578999999999974
No 41
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=99.71 E-value=3.4e-16 Score=94.75 Aligned_cols=79 Identities=23% Similarity=0.253 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC---CCcccCCCCChhhhhhhhHHHHhhCCccchhhhhcchHHHHHHHHhcCChhHHH
Q 042826 65 KLVKKSEEKLGKVLDVYEERLSK---SNYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIRDRKHVSAWWDDISNRPSWKK 141 (146)
Q Consensus 65 ~~~~~~~~~~~~~l~~le~~l~~---~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~~p~~~~ 141 (146)
...+.....+.+.+..+|+.|++ ++|++|+++|+||+++++.+.++.... ....+.+|+|.+|++||.++|++++
T Consensus 31 ~~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~~~~~~~~~~~--~~~~~~~P~l~~~~~rv~~~p~v~~ 108 (126)
T cd03210 31 AGKDDYIKDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYNLFDLLDIHLVLA--PGCLDAFPLLKAFVERLSARPKLKA 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHHHHHHHHHHHHhC--hHhhhcChHHHHHHHHHHhCcHHHH
Confidence 34455677789999999999974 589999999999999999888775322 1236789999999999999999999
Q ss_pred HHhh
Q 042826 142 VLEL 145 (146)
Q Consensus 142 ~~~~ 145 (146)
+++.
T Consensus 109 ~~~~ 112 (126)
T cd03210 109 YLES 112 (126)
T ss_pred HHhC
Confidence 8863
No 42
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.69 E-value=1.5e-16 Score=92.55 Aligned_cols=99 Identities=21% Similarity=0.361 Sum_probs=73.6
Q ss_pred HHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCChhhhhhhhHHHHh
Q 042826 31 EQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDVYEERLSKSNYLAGDFFSLADLSHLPFTQYL 110 (146)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aD~~~~~~l~~~ 110 (146)
++|+.|..+.+.+............. ....+.....+.+.++.+|++|++++|++|+++|+||+++++++.+.
T Consensus 2 ~~w~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~ 74 (100)
T cd03206 2 QRWLSVAAGEIANGPAAARLITLFGA-------PLDKETAIARAHRLLRLLEEHLAGRDWLAGDRPTIADVAVYPYVALA 74 (100)
T ss_pred ceehhhhhhhcccchhHHHHHHHhCC-------HhHHHHHHHHHHHHHHHHHHHHccCCccCCCCCCHHHHHHHHHHHHH
Confidence 56888888887654433332222211 11345678899999999999999999999999999999999888664
Q ss_pred hCCccchhhhhcchHHHHHHHHhcCChhH
Q 042826 111 VGPMEKEYMIRDRKHVSAWWDDISNRPSW 139 (146)
Q Consensus 111 ~~~~~~~~~~~~~p~l~~~~~r~~~~p~~ 139 (146)
.. .....+.+|+|.+|+++|.++|++
T Consensus 75 ~~---~~~~~~~~p~l~~~~~~~~~~p~~ 100 (100)
T cd03206 75 PE---GGVDLEDYPAIRRWLARIEALPGF 100 (100)
T ss_pred hc---cCCChhhCcHHHHHHHHHHhCcCC
Confidence 32 222457899999999999999974
No 43
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=99.69 E-value=1.8e-16 Score=91.31 Aligned_cols=75 Identities=27% Similarity=0.543 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCChhhhhhhhHHHHhhCCccchhhhhcchHHHHHHHHhcCCh
Q 042826 62 VDEKLVKKSEEKLGKVLDVYEERLSKSNYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIRDRKHVSAWWDDISNRP 137 (146)
Q Consensus 62 ~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~~p 137 (146)
..++..+.....+.+.++.+|+.|++++|++|+++|+||+++++.+.++....... ..+++|+|.+|++||.+||
T Consensus 21 ~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~~~~~-~~~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 21 KDEEMVEEARAKVPRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLERLGPDF-LFEKFPKLKKWYERMFARP 95 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHHTTTT-THTTSHHHHHHHHHHHTSH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHHHhCCCc-ccccCHHHHHHHHHHHcCC
Confidence 34557778899999999999999999999999999999999999999876443222 1389999999999999998
No 44
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=99.68 E-value=2.7e-16 Score=90.66 Aligned_cols=96 Identities=16% Similarity=0.236 Sum_probs=73.8
Q ss_pred HHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 042826 5 IRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDVYEER 84 (146)
Q Consensus 5 ~~yL~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~ 84 (146)
++||++.- .+.|.++.++.++++|++.....+.. .....+.+.++.+|++
T Consensus 1 ~r~~~~~~-----~~~~~~~~~~~~vd~~~d~~~~~l~~-------------------------~~~~~~~~~l~~le~~ 50 (96)
T cd03200 1 ARFLYRLL-----GPAPNAPNAATNIDSWVDTAIFQLAE-------------------------GSSKEKAAVLRALNSA 50 (96)
T ss_pred CchHHHHh-----cccCCCchHHHHHHHHHHHHHHHHhc-------------------------CCHHHHHHHHHHHHHH
Confidence 47888883 48999999999999999864322210 1234445677889999
Q ss_pred hcCCCcccCCCCChhhhhhhhHHHHhhCCccchhhhhcchHHHHHHHHhcCC
Q 042826 85 LSKSNYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIRDRKHVSAWWDDISNR 136 (146)
Q Consensus 85 l~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~~ 136 (146)
|++++|++|+++|+|||++++.+.+. ....+.+|+|.+|++||.++
T Consensus 51 L~~~~fl~Gd~~tiADi~l~~~l~~~------~~~~~~~p~l~~w~~r~~~~ 96 (96)
T cd03200 51 LGRSPWLVGSEFTVADIVSWCALLQT------GLASAAPANVQRWLKSCENL 96 (96)
T ss_pred HcCCCccCCCCCCHHHHHHHHHHHHc------ccccccChHHHHHHHHHHhC
Confidence 99999999999999999999887643 11236799999999999763
No 45
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=99.67 E-value=4.1e-16 Score=94.34 Aligned_cols=81 Identities=21% Similarity=0.288 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcC----------------CCcccCCCCChhhhhhhhHHHHhhCCc--cchhhh-hcc
Q 042826 63 DEKLVKKSEEKLGKVLDVYEERLSK----------------SNYLAGDFFSLADLSHLPFTQYLVGPM--EKEYMI-RDR 123 (146)
Q Consensus 63 ~~~~~~~~~~~~~~~l~~le~~l~~----------------~~~l~G~~~t~aD~~~~~~l~~~~~~~--~~~~~~-~~~ 123 (146)
+++..+.....+...|+.+|++|++ ++|++|+++|+|||++++.+.++.... ..++.+ +.+
T Consensus 23 ~~~~~e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~~~~~~~~~g~~i~~~~ 102 (134)
T cd03198 23 NPALNENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIVKVVAKKYRNFEIPADL 102 (134)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCccccC
Confidence 4555677788999999999999986 679999999999999999988764221 112233 789
Q ss_pred hHHHHHHHHhcCChhHHHHH
Q 042826 124 KHVSAWWDDISNRPSWKKVL 143 (146)
Q Consensus 124 p~l~~~~~r~~~~p~~~~~~ 143 (146)
|+|.+|++||.+||++++++
T Consensus 103 P~L~aw~~ri~aRPsfk~t~ 122 (134)
T cd03198 103 TGLWRYLKNAYQREEFTNTC 122 (134)
T ss_pred HHHHHHHHHHHCCHHHHHHc
Confidence 99999999999999999875
No 46
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=99.66 E-value=1.1e-15 Score=91.78 Aligned_cols=104 Identities=19% Similarity=0.313 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHhc---CCCcccCCCCChh
Q 042826 23 TIEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDVYEERLS---KSNYLAGDFFSLA 99 (146)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~---~~~~l~G~~~t~a 99 (146)
|+..|+++++|+.|. ..+...+....+ +... .+.+.+.++.+|+.|+ +++|++| ++|+|
T Consensus 1 d~~~ra~~~~~~~~~-----~~~~~~~~~~~~----~~~~--------~~~~~~~l~~Le~~L~~~~~~~fl~G-~~tlA 62 (120)
T cd03203 1 DPAKREFADELLAYT-----DAFTKALYSSLI----KGDP--------SAEAAAALDYIENALSKFDDGPFFLG-QFSLV 62 (120)
T ss_pred CHHHHHHHHHHHHHH-----HHHHHHHHHHHh----cCCc--------hHHHHHHHHHHHHHHHhcCCCCCcCC-CccHH
Confidence 467899999999882 223222222211 1111 1223456667777776 4899999 99999
Q ss_pred hhhhhhHHHHhhCC--ccchhhh-hcchHHHHHHHHhcCChhHHHHHh
Q 042826 100 DLSHLPFTQYLVGP--MEKEYMI-RDRKHVSAWWDDISNRPSWKKVLE 144 (146)
Q Consensus 100 D~~~~~~l~~~~~~--~~~~~~~-~~~p~l~~~~~r~~~~p~~~~~~~ 144 (146)
||++++++.++... ...++.+ +.+|+|.+|+++|.++|+++++..
T Consensus 63 Di~l~~~~~~~~~~~~~~~~~~~~~~~P~l~~W~~~~~~rp~~~~~~~ 110 (120)
T cd03203 63 DIAYVPFIERFQIFLSELFNYDITEGRPNLAAWIEEMNKIEAYTQTKQ 110 (120)
T ss_pred HHHHHHHHHHHHHHHHHhcCccccccCcHHHHHHHHHhcchHHHhHcC
Confidence 99999998765321 0112223 689999999999999999998753
No 47
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.65 E-value=2.9e-16 Score=102.78 Aligned_cols=128 Identities=16% Similarity=0.194 Sum_probs=78.9
Q ss_pred ChhHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhhccChHHHHHHHH-------------HHh-hccCCCCCCH--
Q 042826 1 SRAIIRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYHPPIYEMTVQ-------------LLF-ASKLGLSVDE-- 64 (146)
Q Consensus 1 S~aI~~yL~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~-~~~~~~~~~~-- 64 (146)
|.+|++||+++||. +.+.|. ++.++++|+.+....+...+...+.. ... ....+.....
T Consensus 61 s~~I~~yL~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 135 (209)
T TIGR02182 61 SLDIVAYFDKLDGE--PLLTGK---VSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSAL 135 (209)
T ss_pred HHHHHHHHHHhCCC--ccCCCC---ChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHH
Confidence 67999999999963 333332 45667777766444332221110000 000 0000000000
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCChhhhhhhhHHHHhhCCccchhhhhcch-HHHHHHHHhcCChhH
Q 042826 65 -KLVKKSEEKLGKVLDVYEERLSKSNYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIRDRK-HVSAWWDDISNRPSW 139 (146)
Q Consensus 65 -~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p-~l~~~~~r~~~~p~~ 139 (146)
...+.....+.+.++.+|++|++++|++| ++|+||+++++++.++.... . . .+| +|.+|++||++++++
T Consensus 136 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~g-~~TiADi~l~~~l~~~~~~~--~--~-~~p~~l~~w~~Ri~ar~~~ 206 (209)
T TIGR02182 136 LNHTPGLLEEINADLEELDKLIDGPNAVNG-ELSEDDILVFPLLRNLTLVA--G--I-NWPSRVADYLDNMSKKSKV 206 (209)
T ss_pred HccCHHHHHHHHHHHHHHHHHHhCccccCC-CCCHHHHHHHHHhcCeeeec--C--C-CCChHHHHHHHHHHHHhCC
Confidence 00124557788999999999999999955 69999999999988765321 1 1 356 999999999998875
No 48
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=99.65 E-value=1.1e-15 Score=82.96 Aligned_cols=68 Identities=26% Similarity=0.395 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCChhhhhhhhHHHHhhCCccchhhhhcchHHHHHHHH
Q 042826 65 KLVKKSEEKLGKVLDVYEERLSKSNYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIRDRKHVSAWWDD 132 (146)
Q Consensus 65 ~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~r 132 (146)
...+...+.+.+.++.+|++|++++|++|++||+||+++++++.++..........+.+|+|.+|++|
T Consensus 2 ~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~r 69 (69)
T PF13410_consen 2 AAVERARAQLEAALDALEDHLADGPFLFGDRPSLADIALAPFLWRLRFVGPDFDLLEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSBTTBSS--HHHHHHHHHHHHHHHCTHTCCHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhCcCcCccccCHHHHHHHhC
Confidence 45677899999999999999999999999999999999999999988664332245899999999987
No 49
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.64 E-value=3.4e-15 Score=88.79 Aligned_cols=71 Identities=18% Similarity=0.323 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHh---cCCCcccCCCCChhhhhhhhHHHHhhCCccchhhhhcchHHHHHHHHhcCChhHHHHHhh
Q 042826 69 KSEEKLGKVLDVYEERL---SKSNYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIRDRKHVSAWWDDISNRPSWKKVLEL 145 (146)
Q Consensus 69 ~~~~~~~~~l~~le~~l---~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~~p~~~~~~~~ 145 (146)
.....+.+.++.+|..+ ++++|++|+ +|+||+++++++.++... +.+. .|+|.+|++||.++|++++++++
T Consensus 41 ~~~~~~~~~~~~le~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~~~~~~---~~~~--~P~l~~~~~rv~~rPsv~~~~~~ 114 (114)
T cd03194 41 AVQADIARIEAIWAECLARFQGGPFLFGD-FSIADAFFAPVVTRFRTY---GLPL--SPAAQAYVDALLAHPAMQEWIAA 114 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CcHHHHHHHHHHHHHHHc---CCCC--CHHHHHHHHHHHCCHHHHHHHhC
Confidence 34444555555555555 467899999 999999999888876532 1122 39999999999999999999863
No 50
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.62 E-value=2.2e-15 Score=88.55 Aligned_cols=79 Identities=27% Similarity=0.316 Sum_probs=64.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCC----------CcccCCCCChhhhhhhhHHHHhhCCccch--hhhhcchHHHH
Q 042826 61 SVDEKLVKKSEEKLGKVLDVYEERLSKS----------NYLAGDFFSLADLSHLPFTQYLVGPMEKE--YMIRDRKHVSA 128 (146)
Q Consensus 61 ~~~~~~~~~~~~~~~~~l~~le~~l~~~----------~~l~G~~~t~aD~~~~~~l~~~~~~~~~~--~~~~~~p~l~~ 128 (146)
..+....+.....+.+.++.+|.+|+++ +|++|+++|+|||++++.+.++....... .....+|+|.+
T Consensus 21 ~~~~~~i~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~~~~~~~~~~~~~P~l~~ 100 (111)
T cd03204 21 HDNVEYLKKILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFLGLSRRYWGNGKRPNLEA 100 (111)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHcCccccccccccChHHHH
Confidence 4567778889999999999999999764 59999999999999999998876332111 01357999999
Q ss_pred HHHHhcCChhH
Q 042826 129 WWDDISNRPSW 139 (146)
Q Consensus 129 ~~~r~~~~p~~ 139 (146)
|++||.+||+|
T Consensus 101 w~~rv~aRpsf 111 (111)
T cd03204 101 YFERVLQRESF 111 (111)
T ss_pred HHHHHHcCCCC
Confidence 99999999975
No 51
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=99.61 E-value=1.2e-15 Score=91.54 Aligned_cols=77 Identities=21% Similarity=0.276 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHhcC-CCcccCCCCChhhhhhhhHHHHhhCCccc--hhh-hhcchHHHHHHHHhcCChhHHHHH
Q 042826 68 KKSEEKLGKVLDVYEERLSK-SNYLAGDFFSLADLSHLPFTQYLVGPMEK--EYM-IRDRKHVSAWWDDISNRPSWKKVL 143 (146)
Q Consensus 68 ~~~~~~~~~~l~~le~~l~~-~~~l~G~~~t~aD~~~~~~l~~~~~~~~~--~~~-~~~~p~l~~~~~r~~~~p~~~~~~ 143 (146)
+...+.+.+.+..+|++|++ ++|++|+++|+||+++++.+.++...... ++. .+.+|+|.+|+++|.+||+|++++
T Consensus 29 ~~~~~~l~~~l~~Le~~L~~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~P~l~~w~~rl~~rps~~~t~ 108 (121)
T cd03201 29 DGTEQALLDELEALEDHLKENGPFINGEKISAVDLSLAPKLYHLEIALGHYKNWSVPESLTSVKSYMKALFSRESFVKTK 108 (121)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHCCchhhhcC
Confidence 33556788899999999985 79999999999999999987766532111 221 378999999999999999999876
Q ss_pred h
Q 042826 144 E 144 (146)
Q Consensus 144 ~ 144 (146)
.
T Consensus 109 ~ 109 (121)
T cd03201 109 A 109 (121)
T ss_pred C
Confidence 4
No 52
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=99.59 E-value=5.1e-15 Score=85.71 Aligned_cols=99 Identities=27% Similarity=0.426 Sum_probs=74.7
Q ss_pred HHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCChhhhhhhhHHHHh
Q 042826 31 EQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDVYEERLSKSNYLAGDFFSLADLSHLPFTQYL 110 (146)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aD~~~~~~l~~~ 110 (146)
++|+.|....+.+.+...+..... ..+..++..+...+.+.+.++.+|++|++++|++|+++|+||+++++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~t~aDi~~~~~l~~~ 77 (100)
T cd00299 2 RAWEEWADTTLEPAARRLLLLAFV----GPEVDEAALEEAREELAAALAALEKLLAGRPYLAGDRFSLADIALAPVLARL 77 (100)
T ss_pred hHHHHHHHhhcCCcccceeeeecc----CCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcCHHHHHHHHHHHHH
Confidence 567888877777766554432221 1134566777888999999999999999999999999999999999999987
Q ss_pred hCCccchhhhhcchHHHHHHHHh
Q 042826 111 VGPMEKEYMIRDRKHVSAWWDDI 133 (146)
Q Consensus 111 ~~~~~~~~~~~~~p~l~~~~~r~ 133 (146)
..........+.+|+|.+|+++|
T Consensus 78 ~~~~~~~~~~~~~p~l~~~~~~~ 100 (100)
T cd00299 78 DLLGPLLGLLDEYPRLAAWYDRL 100 (100)
T ss_pred HHhhhhhhhhccCccHHHHHHhC
Confidence 64432211247899999999985
No 53
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.57 E-value=2.3e-14 Score=93.54 Aligned_cols=83 Identities=30% Similarity=0.311 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcC----CCcccCCCCChhhhhhhhHHHHhhCCccchhhh--hcchHHHHHHHHhcCC
Q 042826 63 DEKLVKKSEEKLGKVLDVYEERLSK----SNYLAGDFFSLADLSHLPFTQYLVGPMEKEYMI--RDRKHVSAWWDDISNR 136 (146)
Q Consensus 63 ~~~~~~~~~~~~~~~l~~le~~l~~----~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~--~~~p~l~~~~~r~~~~ 136 (146)
+....+.....+..+|..+|..|.+ .+|++|+++|+||+.+++.|.++.......... ..-|+|..|++||..|
T Consensus 199 d~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL~~Lg~e~~yw~~gsrpnle~Yf~rvrrR 278 (325)
T KOG4420|consen 199 DVSYLKKILDELAMVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRLKFLGLEKKYWEDGSRPNLESYFERVRRR 278 (325)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHHHHcccHHHhcccCCCccHHHHHHHHHhh
Confidence 3344556677888888899998887 579999999999999999999987544332222 4679999999999999
Q ss_pred hhHHHHHhh
Q 042826 137 PSWKKVLEL 145 (146)
Q Consensus 137 p~~~~~~~~ 145 (146)
++|++++-.
T Consensus 279 ~sf~kvlg~ 287 (325)
T KOG4420|consen 279 FSFRKVLGD 287 (325)
T ss_pred hHHHHhhhh
Confidence 999998754
No 54
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=99.56 E-value=4.8e-15 Score=86.07 Aligned_cols=96 Identities=27% Similarity=0.448 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCC--cccCCCCChhh
Q 042826 23 TIEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDVYEERLSKSN--YLAGDFFSLAD 100 (146)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~--~l~G~~~t~aD 100 (146)
++.+++.+++|+.|.. ............+...+...+.+.+.++.++++|++++ |++|++||+||
T Consensus 2 ~~~~~a~i~~W~~f~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD 68 (99)
T PF14497_consen 2 DPYWRALIDRWLDFSV-------------AFRRRKARLEKDEASGDFSREELPKALKILEKHLAERGGDFLVGDKPTLAD 68 (99)
T ss_dssp --TTHHHHHHHHH-GH-------------CCHCCHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHH
T ss_pred chHHHHHHHHHHhccc-------------hhhhHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHH
Confidence 4556788888988541 00000000011223345678889999999999998866 99999999999
Q ss_pred hhhhhHHHHhhCCccchhhhhcchHHHHHHHHhcC
Q 042826 101 LSHLPFTQYLVGPMEKEYMIRDRKHVSAWWDDISN 135 (146)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~ 135 (146)
+++++.+..+.+. ..+ +.+|+|.+|++||++
T Consensus 69 ~~v~~~l~~~~~~---~~~-~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 69 IAVFGFLASLRWA---DFP-KDYPNLVRWYERIEE 99 (99)
T ss_dssp HHHHHHHHHHHCC---HHT-TTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhc---ccc-cccHHHHHHHHhhcC
Confidence 9999999776533 111 589999999999975
No 55
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=99.53 E-value=1.3e-13 Score=80.68 Aligned_cols=101 Identities=22% Similarity=0.250 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHhcC--CCcccCCCCChhhhhh
Q 042826 26 ERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDVYEERLSK--SNYLAGDFFSLADLSH 103 (146)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~--~~~l~G~~~t~aD~~~ 103 (146)
++.+++++++.+.+ +...+...++ .+ .+....+.........+.+.++.+|++|++ ++|++|+++|+||+++
T Consensus 2 e~~~v~~~~~~~~d-~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~G~~~s~aDi~l 75 (104)
T cd03192 2 EAARVDALVDTIAD-LRAEFAKYFY----EK-DGEEKKEKKKEFLKEAIPKYLKKLEKILKENGGGYLVGDKLTWADLVV 75 (104)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHhh----cC-chHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCeeeCCCccHHHHHH
Confidence 57788888887543 3333333322 11 111123566677888899999999999987 8999999999999999
Q ss_pred hhHHHHhhCCccchhhhhcchHHHHHHHHh
Q 042826 104 LPFTQYLVGPMEKEYMIRDRKHVSAWWDDI 133 (146)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~p~l~~~~~r~ 133 (146)
++++.++....... ..+.+|+|.+|+++|
T Consensus 76 ~~~~~~~~~~~~~~-~~~~~p~l~~~~~~~ 104 (104)
T cd03192 76 FDVLDYLLYLDPKL-LLKKYPKLKALRERV 104 (104)
T ss_pred HHHHHHHHhhCchh-hHHhChhHHHHHHhC
Confidence 99998875332211 267899999999985
No 56
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.52 E-value=7.4e-14 Score=84.22 Aligned_cols=69 Identities=13% Similarity=0.150 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccCCCCChhhhhhhhHHHHhhCCccchhhhhcchHHHHHHHHhcCC
Q 042826 67 VKKSEEKLGKVLDVYEERLSKSNYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIRDRKHVSAWWDDISNR 136 (146)
Q Consensus 67 ~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~~ 136 (146)
.+...+.+.+.++.+|++|++++|++|+++|+||+++++.+.+........ ..+.+|+|.+|++||.+.
T Consensus 56 ~~~~~~~~~~~l~~l~~~L~~~~fl~Gd~~t~AD~~l~~~l~~~~~~~~~~-~~~~~p~l~~W~~r~~~~ 124 (124)
T cd03202 56 REAALANFRAALEPLRATLKGQPFLGGAAPNYADYIVFGGFQWARIVSPFP-LLEEDDPVYDWFERCLDL 124 (124)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCccCCCCCchhHHHHHHHHHHHHHcCccc-ccccCChHHHHHHHHhcC
Confidence 456778899999999999999999999999999999999988876432222 247899999999999863
No 57
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=99.50 E-value=2e-13 Score=77.50 Aligned_cols=66 Identities=11% Similarity=0.163 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcccCCCCChhhhhhhhHHHHhhCCc--cc--hhhhhcchHHHHHHHHhc
Q 042826 69 KSEEKLGKVLDVYEERLSKSNYLAGDFFSLADLSHLPFTQYLVGPM--EK--EYMIRDRKHVSAWWDDIS 134 (146)
Q Consensus 69 ~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aD~~~~~~l~~~~~~~--~~--~~~~~~~p~l~~~~~r~~ 134 (146)
...+.+.+.++.+|+.|++++|++|+++|+|||++++.+.++.... .. ...++.+|+|.+|++||.
T Consensus 19 ~~~~~~~~~l~~le~~L~~~~yl~Gd~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~r~~ 88 (88)
T cd03193 19 EIYSLAKKDLKALSDLLGDKKFFFGDKPTSLDATVFGHLASILYAPLPNSALQLILKEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHHhC
Confidence 5677889999999999999999999999999999999988875321 11 124578999999999984
No 58
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.43 E-value=1.5e-12 Score=75.40 Aligned_cols=71 Identities=20% Similarity=0.237 Sum_probs=58.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCChhhhhhhhHHHHhhCCccchhhhhcchHHHHHHHHh
Q 042826 60 LSVDEKLVKKSEEKLGKVLDVYEERLSKSNYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIRDRKHVSAWWDDI 133 (146)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~r~ 133 (146)
....+...+.....+.+.+..+|++|++++| +++|+|||++++.+.+...........+++|+|.+|++||
T Consensus 28 ~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~---d~~TlADi~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~rm 98 (98)
T cd03205 28 EKRSQPWLERQRGKIERALDALEAELAKLPL---DPLDLADIAVACALGYLDFRHPDLDWRAAHPALAAWYARF 98 (98)
T ss_pred hhhChHHHHHHHHHHHHHHHHHHHhhhhCCC---CCCCHHHHHHHHHHHHHHhHccCcchhhhChHHHHHHHhC
Confidence 3556778888999999999999999998888 8999999999999988753221111257899999999986
No 59
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.38 E-value=2e-12 Score=78.16 Aligned_cols=69 Identities=14% Similarity=0.188 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccCCCCChhhhhhhhHHHHhhCC-c---cchhhhhcchHHHHHHHHhc
Q 042826 66 LVKKSEEKLGKVLDVYEERLSKSNYLAGDFFSLADLSHLPFTQYLVGP-M---EKEYMIRDRKHVSAWWDDIS 134 (146)
Q Consensus 66 ~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aD~~~~~~l~~~~~~-~---~~~~~~~~~p~l~~~~~r~~ 134 (146)
..+.......+.++.+++.|++++|++|++||.+|+++++++..+... . .....++.+|+|.+|++||.
T Consensus 54 ~~ee~~~~~~~~l~aLs~~Lg~~~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~~~~~pnL~~y~~Ri~ 126 (126)
T cd03211 54 TLDQVIEEVDQCCQALSQRLGTQPYFFGDQPTELDALVFGHLFTILTTQLPNDELAEKVKKYSNLLAFCRRIE 126 (126)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHhcC
Confidence 335667778899999999999999999999999999999998887643 1 11113678999999999984
No 60
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.8e-12 Score=85.49 Aligned_cols=132 Identities=20% Similarity=0.308 Sum_probs=99.5
Q ss_pred ChhHHHHHHHHhc---cCCCCCCCCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHH
Q 042826 1 SRAIIRYYAEKYR---SQGTELLGKTIEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKV 77 (146)
Q Consensus 1 S~aI~~yL~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (146)
|..|++=+...|. .....++|.+ .|.+++.|.+++-..+...+- .. |-...++..++....+-..
T Consensus 146 S~eIirm~N~aFde~~~~~~dlyP~~--Lr~eId~~n~~Iy~~vNNGVY--------k~--GFA~tq~aYeea~~~lF~~ 213 (324)
T COG0435 146 SAEIIRMFNSAFDEFGASAVDLYPEA--LRTEIDELNKWIYDTVNNGVY--------KA--GFATTQEAYEEAVKKLFEA 213 (324)
T ss_pred cHHHHHHHHHHHHHHhhhccccCCHH--HHHHHHHHHhhhcccccCcee--------ee--cccchHHHHHHHHHHHHHH
Confidence 4567766655442 2234577766 688888888887666655432 21 3455677778888889999
Q ss_pred HHHHHHHhcCCCcccCCCCChhhhhhhhHHHHhhCCccch-----hhhhcchHHHHHHHHhcCChhHHHHHh
Q 042826 78 LDVYEERLSKSNYLAGDFFSLADLSHLPFTQYLVGPMEKE-----YMIRDRKHVSAWWDDISNRPSWKKVLE 144 (146)
Q Consensus 78 l~~le~~l~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~-----~~~~~~p~l~~~~~r~~~~p~~~~~~~ 144 (146)
|+.+|..|+++.|++|+++|-||+-+|+.|.++....-.. ..+..||+|..|...+-+.|+|+.+..
T Consensus 214 Ld~lE~~L~~~ryl~Gd~lTEAD~RLftTlvRFD~VYvgHFKCN~~rI~dypnL~~yLr~LYq~pg~~~T~d 285 (324)
T COG0435 214 LDKLEQILSERRYLTGDQLTEADIRLFTTLVRFDPVYVGHFKCNLRRIRDYPNLWGYLRDLYQLPGFAETVD 285 (324)
T ss_pred HHHHHHHhhcCeeeccccchHhhhhhhheeEeecceEEeeeecccchhhcCchHHHHHHHHhcCcccccccc
Confidence 9999999999999999999999999999998876443211 134679999999999999999987653
No 61
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=99.30 E-value=1.7e-11 Score=75.08 Aligned_cols=72 Identities=14% Similarity=0.200 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCChhhhhhhhHHHHhhCCccc----hhhhhcchHHHHHHHHhcC
Q 042826 64 EKLVKKSEEKLGKVLDVYEERLSKSNYLAGDFFSLADLSHLPFTQYLVGPMEK----EYMIRDRKHVSAWWDDISN 135 (146)
Q Consensus 64 ~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~----~~~~~~~p~l~~~~~r~~~ 135 (146)
....+.......+.++.+++.|++++|++|+++|.+|+.+++.+..+...... ...+..+|+|.+|++||.+
T Consensus 59 ~~~~~~~~~~a~~~l~~l~~~L~~~~~~~Gd~~t~~D~~~~~~l~~~~~~~~~~~~l~~~~~~~pnL~~~~~ri~~ 134 (137)
T cd03212 59 TEVEAEIYRDAKECLNLLSQRLGESQFFFGDTPTSLDALVFGYLAPLLKAPLPNNKLQNHLKQCPNLCRFCDRILS 134 (137)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcHHHHHHHHHHHHHHhccCCChHHHHHHHHCcHHHHHHHHHHH
Confidence 44566777888899999999999999999999999999999888776532221 1236789999999999975
No 62
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=3e-12 Score=83.80 Aligned_cols=132 Identities=17% Similarity=0.265 Sum_probs=96.2
Q ss_pred ChhHHHHHHHHhc-------cCCCCCCCCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHH
Q 042826 1 SRAIIRYYAEKYR-------SQGTELLGKTIEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEK 73 (146)
Q Consensus 1 S~aI~~yL~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (146)
|..|++-+-..|. .+.-.|+|++ .+++++.|.+|+-+.+...+-. - |....++..+.....
T Consensus 140 S~eIIr~fNs~f~ef~~~~e~~~lDL~P~~--L~~~Ide~N~wvy~~INNGVYk--------~--GFA~~~e~Ye~~V~~ 207 (319)
T KOG2903|consen 140 SSEIIRMFNSAFDEFNGIAENPVLDLYPSS--LRAQIDETNSWVYDKINNGVYK--------C--GFAEKQEAYEEEVNQ 207 (319)
T ss_pred hHHHHHHHhhhhhhhhccccCCccccCCHH--HHHHHhhhhceecccccCceee--------e--ccccccchHHHHHHH
Confidence 5678887773331 0123366655 6899999999987777654322 1 334566667777888
Q ss_pred HHHHHHHHHHHhcCCC--cccCCCCChhhhhhhhHHHHhhCCcc----ch-h-hhhcchHHHHHHHHhcC-ChhHHHHHh
Q 042826 74 LGKVLDVYEERLSKSN--YLAGDFFSLADLSHLPFTQYLVGPME----KE-Y-MIRDRKHVSAWWDDISN-RPSWKKVLE 144 (146)
Q Consensus 74 ~~~~l~~le~~l~~~~--~l~G~~~t~aD~~~~~~l~~~~~~~~----~~-~-~~~~~p~l~~~~~r~~~-~p~~~~~~~ 144 (146)
+-+.|+.+|+.|+++. |++|+++|-|||-+|+.+.++..... .. . ...+||+|..|.+++-. +|+++.+..
T Consensus 208 lfe~LDr~E~vL~~~~~~f~~G~~LTeaDirLy~TiIRFD~VY~~hFKCn~~~ir~~Yp~l~~~lk~iY~~~~~~~~Ttd 287 (319)
T KOG2903|consen 208 LFEALDRCEDVLGKNRKYFLCGDTLTEADIRLYTTIIRFDEVYVQHFKCNKKTIRDEYPNLHNWLKNIYWNIPGFSSTTD 287 (319)
T ss_pred HHHHHHHHHHHHhcccceEeeccccchhheeeeeeEEeehhhhheeeecchhhhhccCcHHHHHHHHHHhhccchhhccc
Confidence 8999999999999866 99999999999999999888764431 11 1 33599999999999877 999887643
No 63
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=99.25 E-value=3e-10 Score=65.82 Aligned_cols=112 Identities=19% Similarity=0.180 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHhcC-CCcccCCCCChhhh
Q 042826 23 TIEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDVYEERLSK-SNYLAGDFFSLADL 101 (146)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~-~~~l~G~~~t~aD~ 101 (146)
|..+|++.++...|..+.+++.=...--..++.. ......-+.....+.+.+...+..|.+ ++||+|+ .|+||.
T Consensus 1 D~~~RArAR~vqAwlrSdf~~lR~Erpt~vvf~~----~~~~pLs~~a~~~a~kL~~~a~~ll~~g~~~LFGe-wsIAD~ 75 (117)
T PF14834_consen 1 DRQERARARQVQAWLRSDFMALRQERPTNVVFRG----ARKPPLSEAAQAAAQKLIAVAERLLADGGPNLFGE-WSIADA 75 (117)
T ss_dssp SHHHHHHHHHHHHHHHHS-HHHHHHS-THHHHS------------HHHHHHHHHHHHHHHHHTTT--SSTTSS---HHHH
T ss_pred CHHHHHHHHHHHHHHHcccHHHHhhCChhhhhcC----CCCCCCCHHHHHHHHHHHHHHHHHhccCCCCcccc-chHHHH
Confidence 4678999999999999988773222111222221 112223344556667777788888875 7899985 999999
Q ss_pred hhhhHHHHhhCCccchhhhhcchHHHHHHHHhcCChhHHHHHh
Q 042826 102 SHLPFTQYLVGPMEKEYMIRDRKHVSAWWDDISNRPSWKKVLE 144 (146)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~~p~~~~~~~ 144 (146)
.+.+++.++.... ..-.+++..|.++.-++|++++++.
T Consensus 76 dlA~ml~Rl~~~g-----d~vP~~l~~Ya~~qwqrpsVQ~Wla 113 (117)
T PF14834_consen 76 DLALMLNRLVTYG-----DPVPERLADYAERQWQRPSVQRWLA 113 (117)
T ss_dssp HHHHHHHHHHTTT---------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHHHHcC-----CCCCHHHHHHHHHHHCCHHHHHHHH
Confidence 9999999987432 2234699999999999999999975
No 64
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=99.22 E-value=3.1e-11 Score=73.94 Aligned_cols=62 Identities=18% Similarity=0.353 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHh-cCCCcccCCCCChhhhhhhhHHHHhhCCccchh-hhhcchHHHHHHHHhcC
Q 042826 72 EKLGKVLDVYEERL-SKSNYLAGDFFSLADLSHLPFTQYLVGPMEKEY-MIRDRKHVSAWWDDISN 135 (146)
Q Consensus 72 ~~~~~~l~~le~~l-~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~-~~~~~p~l~~~~~r~~~ 135 (146)
+.+...++.+-+.+ ++++|++|+++|+|||++++.+..+.... .+ ++.++|++.+|++||++
T Consensus 82 ~~L~~a~~~w~~~~~~~~~FlaGd~ptIADisvyg~l~s~e~~~--~~~Dl~~~p~I~~W~eRm~~ 145 (149)
T cd03197 82 EWLYDALNTWVAALGKDRQFHGGSKPNLADLAVYGVLRSVEGHP--AFKDMVEETKIGEWYERMDA 145 (149)
T ss_pred HHHHHHHHHHHHHhcCCCCccCCCCCCHHHHHHHHHHHHHHHhc--cccchhhCcCHHHHHHHHHH
Confidence 33333333333334 45789999999999999999998876443 23 57799999999999975
No 65
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.01 E-value=6.3e-09 Score=68.71 Aligned_cols=67 Identities=18% Similarity=0.256 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcccCCCCChhhhhhhhHHHHhhCCcc---chhhhhcchHHHHHHHHhcC
Q 042826 69 KSEEKLGKVLDVYEERLSKSNYLAGDFFSLADLSHLPFTQYLVGPME---KEYMIRDRKHVSAWWDDISN 135 (146)
Q Consensus 69 ~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~---~~~~~~~~p~l~~~~~r~~~ 135 (146)
+..+.+.+-+..+++.|++++||.|+++|-+|+.+++.|..+..... .++.-+++|+|..|.+||++
T Consensus 203 Ei~ell~rDlr~i~~~Lg~KkflfGdkit~~DatvFgqLa~v~YP~~~~i~d~le~d~p~l~eYceRIr~ 272 (281)
T KOG4244|consen 203 EIDELLHRDLRAISDYLGDKKFLFGDKITPADATVFGQLAQVYYPFRSHISDLLEGDFPNLLEYCERIRK 272 (281)
T ss_pred HHHHHHHHHHHHHHHHhCCCccccCCCCCcceeeehhhhhheeccCCCcHHHHHhhhchHHHHHHHHHHH
Confidence 35667788899999999999999999999999999999888765211 22233789999999999975
No 66
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=98.90 E-value=8.7e-09 Score=65.82 Aligned_cols=76 Identities=24% Similarity=0.292 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC---CCcccCCCCChhhhhhhhHHHHhhCCcc--chhhh-hcchHHHHHHHHhcCChhH
Q 042826 66 LVKKSEEKLGKVLDVYEERLSK---SNYLAGDFFSLADLSHLPFTQYLVGPME--KEYMI-RDRKHVSAWWDDISNRPSW 139 (146)
Q Consensus 66 ~~~~~~~~~~~~l~~le~~l~~---~~~l~G~~~t~aD~~~~~~l~~~~~~~~--~~~~~-~~~p~l~~~~~r~~~~p~~ 139 (146)
..+.....+...|..|+++|+. ++|+.||++|.||+.+.+=|..+..... ..+.+ ++++.+.+|++.+-++.+|
T Consensus 120 ~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDcsLlPKL~~i~va~k~yk~~~IP~~lt~V~rYl~~~ya~d~F 199 (221)
T KOG1422|consen 120 ANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLTLADCSLLPKLHHIKVAAKHYKNFEIPASLTGVWRYLKNAYARDEF 199 (221)
T ss_pred ccchHHHHHHHHHHHHHHHhcCccCCccccCCeeeeehhhhchhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHhHHHh
Confidence 3445677788888999999984 7999999999999999999988764432 22333 6789999999999998887
Q ss_pred HH
Q 042826 140 KK 141 (146)
Q Consensus 140 ~~ 141 (146)
..
T Consensus 200 ~~ 201 (221)
T KOG1422|consen 200 TN 201 (221)
T ss_pred hc
Confidence 64
No 67
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=1.2e-05 Score=51.72 Aligned_cols=70 Identities=11% Similarity=0.171 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccCCCCChhhhhhhhHHHHhhCCccch----hhhhcchHHHHHHHHhcCC
Q 042826 67 VKKSEEKLGKVLDVYEERLSKSNYLAGDFFSLADLSHLPFTQYLVGPMEKE----YMIRDRKHVSAWWDDISNR 136 (146)
Q Consensus 67 ~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~----~~~~~~p~l~~~~~r~~~~ 136 (146)
.+...+.+.+..+.++..|+.++||.|++||-+|..+++-+..+....-.. -.+..|++|.++..|+.++
T Consensus 175 ~DqVie~vdkc~~aLsa~L~~q~yf~g~~P~elDAlvFGHlytilTt~Lpn~ela~~lkkys~LlefcrrIeq~ 248 (257)
T KOG3027|consen 175 MDQVIEQVDKCCRALSAQLGSQPYFTGDQPTELDALVFGHLYTILTTRLPNMELANILKKYSNLLEFCRRIEQQ 248 (257)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccCCCCccHHHHHHHhhhHHhhhhcCCcHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344567788889999999999999999999999999888877766443211 1357899999999999763
No 68
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=5.7e-05 Score=51.53 Aligned_cols=131 Identities=11% Similarity=0.120 Sum_probs=85.0
Q ss_pred hHHHHHHHHhccCCCCCCCC-CHHHHHHHHHHHHHhhhccChHHHHHHHHH---------------------HhhccCC-
Q 042826 3 AIIRYYAEKYRSQGTELLGK-TIEERGLVEQWLEVEAHNYHPPIYEMTVQL---------------------LFASKLG- 59 (146)
Q Consensus 3 aI~~yL~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~- 59 (146)
-|+.+|.... .+..+-+. ...+.++...|+.+....+.+.....++.. .+.|..-
T Consensus 66 ~iv~~L~k~~--~ky~~d~dl~~kq~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~ 143 (313)
T KOG3028|consen 66 KIVQFLKKNT--KKYNLDADLSAKQLADTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQ 143 (313)
T ss_pred HHHHHHHHhc--ccCCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhH
Confidence 4777887742 12233332 267888888888888877776554433221 0011000
Q ss_pred ----------CCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCChhhhhhhhHHHHhhCCc-cch---hhhhcchH
Q 042826 60 ----------LSVDEKLVKKSEEKLGKVLDVYEERLSKSNYLAGDFFSLADLSHLPFTQYLVGPM-EKE---YMIRDRKH 125 (146)
Q Consensus 60 ----------~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aD~~~~~~l~~~~~~~-~~~---~~~~~~p~ 125 (146)
.+...+..+.......+.++.++..|+++.|++||++|--|..++..+..+.... +.. ..+..+++
T Consensus 144 ~qAk~rl~l~~g~~~~~e~~i~~~Aska~~~LS~~Lgs~kffFgd~psslDa~lfs~la~~~~~~Lp~~~Lq~~l~~~~N 223 (313)
T KOG3028|consen 144 RQAKERLQLTLGELTEREDQIYKDASKALNLLSTLLGSKKFFFGDKPSSLDALLFSYLAILLQVALPNDSLQVHLLAHKN 223 (313)
T ss_pred HHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHhcCceEeeCCCCchHHHHHHHHHHHHHhccCCchhHHHHHHhcch
Confidence 0112233455667778999999999999999999999999999999888844332 211 12345899
Q ss_pred HHHHHHHhcC
Q 042826 126 VSAWWDDISN 135 (146)
Q Consensus 126 l~~~~~r~~~ 135 (146)
|.++.+++.+
T Consensus 224 L~~~~~~i~s 233 (313)
T KOG3028|consen 224 LVRYVERIRS 233 (313)
T ss_pred HHHHHHHHHH
Confidence 9999999865
No 69
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=97.84 E-value=3.5e-05 Score=51.90 Aligned_cols=64 Identities=20% Similarity=0.265 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHh-cCCCcccCCCCChhhhhhhhHHHHhhCCccchhhhhcchHHHHHHHHhcC
Q 042826 71 EEKLGKVLDVYEERL-SKSNYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIRDRKHVSAWWDDISN 135 (146)
Q Consensus 71 ~~~~~~~l~~le~~l-~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~ 135 (146)
++.+...++..-+.+ ++++|+.|++|++||+++|..+..+..... ..++-...++..|+-||++
T Consensus 290 Re~lydA~d~Wvaalgknr~flGG~kPnLaDLsvfGvl~sm~gc~a-fkd~~q~t~I~eW~~rmea 354 (370)
T KOG3029|consen 290 REHLYDAADQWVAALGKNRPFLGGKKPNLADLSVFGVLRSMEGCQA-FKDCLQNTSIGEWYYRMEA 354 (370)
T ss_pred HHHHHHHHHHHHHHhCCCCCccCCCCCchhhhhhhhhhhHhhhhhH-HHHHHhcchHHHHHHHHHH
Confidence 334444444444445 468999999999999999999998764432 2255667899999999875
No 70
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=97.61 E-value=0.00037 Score=42.26 Aligned_cols=66 Identities=23% Similarity=0.225 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCcccCCCCChhhhhhhhHHHHhhCCccchhhhhcchHHHHHHHHhcCChhHH
Q 042826 70 SEEKLGKVLDVYEERLSKSNYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIRDRKHVSAWWDDISNRPSWK 140 (146)
Q Consensus 70 ~~~~~~~~l~~le~~l~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~~p~~~ 140 (146)
....+...|..++..+.......| ++|+-||.+++.|..+.-.. + ++=-|++.+|+++|++...+.
T Consensus 60 ~i~~l~~~L~~Le~ll~~~~~~n~-~LS~dDi~lFp~LR~Ltivk--g--i~~P~~V~~Y~~~~s~~t~V~ 125 (132)
T PF04399_consen 60 LIAELNADLEELEPLLASPNAVNG-ELSIDDIILFPILRSLTIVK--G--IQWPPKVRAYMDRMSKATGVP 125 (132)
T ss_dssp HHHHHHHHHHHHHHH-SCTTBTTS-S--HHHHHHHHHHHHHCTCT--T--S---HHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHhccccccCC-CCCHHHHHHHHHHhhhhhcc--C--CcCCHHHHHHHHHHHHHcCCC
Confidence 455667777777777764444444 89999999999999875332 2 333469999999999876654
No 71
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.00014 Score=53.33 Aligned_cols=93 Identities=23% Similarity=0.375 Sum_probs=59.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCC
Q 042826 18 ELLGKTIEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDVYEERLSKSNYLAGDFFS 97 (146)
Q Consensus 18 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t 97 (146)
.+++.+ .++.+++.|+++... .....+...+..++..|.-..|++|.++|
T Consensus 67 ~lf~~~-~d~~~vd~w~~~s~~-----------------------------~~~~~~s~~~~~ld~~l~~~t~lvg~sls 116 (712)
T KOG1147|consen 67 KLFGNN-IDRSQVDHWVSFSST-----------------------------FSFDEISSSLSELDKFLVLRTFLVGNSLS 116 (712)
T ss_pred hHcCCc-ccHHHHHHHHHHhhh-----------------------------cchHHHHHHHHHHHhhhhHHHHhhccchh
Confidence 466665 677777777776432 12334455566777777778899999999
Q ss_pred hhhhhhhhHHHHhhCCccchh-h-hhcchHHHHHHHHhcCChhHHHH
Q 042826 98 LADLSHLPFTQYLVGPMEKEY-M-IRDRKHVSAWWDDISNRPSWKKV 142 (146)
Q Consensus 98 ~aD~~~~~~l~~~~~~~~~~~-~-~~~~p~l~~~~~r~~~~p~~~~~ 142 (146)
+||++++..+..-. ..... . ...+.++.+|++-....+..+++
T Consensus 117 ~Ad~aiw~~l~~n~--~~~~~lk~~k~~~~v~Rw~~~~~~~~a~~~v 161 (712)
T KOG1147|consen 117 IADFAIWGALHSNG--MRQEQLKAKKDYQNVERWYDLPEFQEAHNKV 161 (712)
T ss_pred HHHHHHHHHHhccc--chHHHHHhhCCchhhhhhcCcHhHHHHHHHH
Confidence 99999998887521 11111 1 23566899999844444444333
No 72
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.00031 Score=44.29 Aligned_cols=66 Identities=12% Similarity=0.158 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHhcCCCcccCCCCChhhhhhhhHHHHhhCCccchhhhhcch-HHHHHHHHhcCChhHHHH
Q 042826 71 EEKLGKVLDVYEERLSKSNYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIRDRK-HVSAWWDDISNRPSWKKV 142 (146)
Q Consensus 71 ~~~~~~~l~~le~~l~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p-~l~~~~~r~~~~p~~~~~ 142 (146)
..++..-++.+++.+.+.. -....+++-|+.+|+.+..+.... + -+|| ++..|+++|.+...+.-+
T Consensus 144 ~~~i~~dl~~l~~Li~~~s-~~n~~l~~ddi~vFplLRnlt~v~--g---i~wps~v~dy~~~msektqV~Ll 210 (215)
T COG2999 144 LKRIQADLRALDKLIVGPS-AVNGELSEDDILVFPLLRNLTLVA--G---IQWPSRVADYRDNMSEKTQVNLL 210 (215)
T ss_pred HHHHHHHHHHHHHHhcCcc-hhccccchhhhhhhHHhccceecc--c---CCCcHHHHHHHHHHHHhhCcchh
Confidence 4455566666666665544 223469999999999999765332 2 1455 999999999987766543
No 73
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=97.19 E-value=0.0018 Score=39.09 Aligned_cols=65 Identities=15% Similarity=0.128 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCcccCCCCChhhhhhhhHHHHhhCCccchhhhhcchHHHHHHHHhcCChhH
Q 042826 70 SEEKLGKVLDVYEERLSKSNYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIRDRKHVSAWWDDISNRPSW 139 (146)
Q Consensus 70 ~~~~~~~~l~~le~~l~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~~p~~ 139 (146)
....+...|..++..+.... .++.++|+-||.++++|..+.... + ++=-|++..|+++|++..+|
T Consensus 61 ~i~~l~~~L~~l~~ll~~~~-~~n~~ls~DDi~lFp~LR~Lt~vk--g--i~~P~~V~~Y~~~~s~~t~V 125 (128)
T cd03199 61 YIAALNALLEELDPLILSSE-AVNGQLSTDDIILFPILRNLTLVK--G--LVFPPKVKAYLERMSALTKV 125 (128)
T ss_pred HHHHHHHHHHHHHHHHcCcc-ccCCcCCHHHHHHHHHHhhhhhhc--C--CCCCHHHHHHHHHHHHHhCC
Confidence 34556667777777774333 356689999999999999875322 2 33336999999999876554
No 74
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=95.69 E-value=0.066 Score=34.08 Aligned_cols=39 Identities=26% Similarity=0.270 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhcCC---CcccCCC-CChhhhhhhhHHHHhh
Q 042826 73 KLGKVLDVYEERLSKS---NYLAGDF-FSLADLSHLPFTQYLV 111 (146)
Q Consensus 73 ~~~~~l~~le~~l~~~---~~l~G~~-~t~aD~~~~~~l~~~~ 111 (146)
...+.+..+++.|++. .|++|+. +|.+|+.++..+.-+.
T Consensus 112 ~a~~~l~~L~~~L~~~~~~~~~f~~~~psslD~L~~ayL~l~l 154 (168)
T PF11801_consen 112 LAMECLSLLEELLGEWEEARYFFGDSKPSSLDCLAFAYLALLL 154 (168)
T ss_pred HHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHh
Confidence 4677888889999888 9999987 9999999888877654
No 75
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=85.53 E-value=1.1 Score=30.01 Aligned_cols=58 Identities=12% Similarity=0.149 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhcCCCcccCCCCChhhhhhhhHHHHhhCCccchhhhhcchHHHHHHHHhcCChhH
Q 042826 75 GKVLDVYEERLSKSNYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIRDRKHVSAWWDDISNRPSW 139 (146)
Q Consensus 75 ~~~l~~le~~l~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~r~~~~p~~ 139 (146)
...++.++..|.++.|.-|.+++-+|+.++..+. ..+ ....+++..+|+..+.+....
T Consensus 10 ~~glk~l~~sLA~ks~~~g~~~s~edv~vf~al~---~ep----~s~~~v~~~~w~~~l~a~~~~ 67 (231)
T KOG1668|consen 10 PAGLKKLNKSLAEKSYIEGYQLSKEDVVVFAALG---VEP----QSARLVNAERWYSKLEALLRL 67 (231)
T ss_pred hhhhhhhhHhhhcccCCCCCCcccccceeehhcc---cCc----chhhhhHHHHHHHHHHHHHHH
Confidence 5677889999999999999999999998775443 111 124667778888777665444
No 76
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=55.01 E-value=12 Score=18.98 Aligned_cols=39 Identities=15% Similarity=0.171 Sum_probs=20.5
Q ss_pred HhcCCCcccCCCCChhhhhhhhHHHHhhCCccchhhhhcchHHH
Q 042826 84 RLSKSNYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIRDRKHVS 127 (146)
Q Consensus 84 ~l~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~ 127 (146)
.+++.|-+.|.+.+..|+.-.. ......+...+.||.|.
T Consensus 7 ~~~G~P~i~GTRI~v~~i~~~~-----~~G~s~eeI~~~yp~Lt 45 (56)
T PF04255_consen 7 ILGGQPVIRGTRIPVRDILDLL-----AAGESPEEIAEDYPSLT 45 (56)
T ss_dssp SGGG--EETTSS-BHHHHHHHH-----HTT--HHHHHHHSTT--
T ss_pred ccCCcceEcCceecHHHHHHHH-----HcCCCHHHHHHHCCCCC
Confidence 4667899999999999986331 12222232556788553
No 77
>PRK15371 effector protein YopJ; Provisional
Probab=50.91 E-value=52 Score=23.15 Aligned_cols=51 Identities=16% Similarity=0.266 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcccCCCCChhhhhhhhHHHHhhCCccchhhh
Q 042826 69 KSEEKLGKVLDVYEERLSKSNYLAGDFFSLADLSHLPFTQYLVGPMEKEYMI 120 (146)
Q Consensus 69 ~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~ 120 (146)
...+.+...++.+|+.++++.|+ -+.++.-|+-..+.+.........+.++
T Consensus 23 ~~~~~L~~~i~~le~~~~~G~~~-~~~~~~~Di~~lp~lv~~~N~r~P~LNL 73 (287)
T PRK15371 23 ISNEELKNIITQLEDDIADGSWI-HKNYARTDLEVMPALVAQANNKYPEMNL 73 (287)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCC-CchhHHhhHHhhHHHHHHHhccCCCCCe
Confidence 45677899999999999998888 4568999999888887765443333333
No 78
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=48.77 E-value=13 Score=23.07 Aligned_cols=21 Identities=10% Similarity=0.521 Sum_probs=16.9
Q ss_pred hcchHHHHHHHHhcCChhHHH
Q 042826 121 RDRKHVSAWWDDISNRPSWKK 141 (146)
Q Consensus 121 ~~~p~l~~~~~r~~~~p~~~~ 141 (146)
..--.|++|++||.++|....
T Consensus 109 ~rr~~LqrfL~RV~~hP~L~~ 129 (140)
T cd06891 109 KLKANLQRWFNRVCSDPILIR 129 (140)
T ss_pred HHHHHHHHHHHHHhCChhhcc
Confidence 335689999999999997653
No 79
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=48.02 E-value=34 Score=16.60 Aligned_cols=21 Identities=14% Similarity=0.476 Sum_probs=15.9
Q ss_pred hHHHHHHHHhcCChhHHHHHh
Q 042826 124 KHVSAWWDDISNRPSWKKVLE 144 (146)
Q Consensus 124 p~l~~~~~r~~~~p~~~~~~~ 144 (146)
..+.++++++.+.|.++.-++
T Consensus 4 ~~l~~Fl~~~~~d~~l~~~l~ 24 (49)
T PF07862_consen 4 ESLKAFLEKVKSDPELREQLK 24 (49)
T ss_pred HHHHHHHHHHhcCHHHHHHHH
Confidence 467888888888888877654
No 80
>PF03421 YopJ: YopJ Serine/Threonine acetyltransferase; InterPro: IPR005083 The infection of mammalian host cells by Yersinia sp. causes a rapid induction of the mitogen-activated protein kinase (MAPK; including the ERK, JNK and p38 pathways) and nuclear factor kappaB (NF-kappaB) signalling pathways that would typically result in cytokine production and initiation of the innate immune response. However, these pathways are rapidly inhibited promoting apoptosis. YopJ has been shown to block phosphorylation of active site residues []. It has also been shown that YopJ acetyltransferase is activated by eukaryotic host cell inositol hexakisphosphate []. Serine and threonine acetylation is yet another complication to the control of signalling pathways and may be a may be a widespread mode of biochemical regulation of endogenous processes in eukaryotic cells. It has been shown that YopJ is a serine/threonine acetyltransferase []. It acetylates the serine and threonine residues in the phosphorylation sites of MAPK kinases and nuclear factor kappaB, preventing their activation by phosphorylation and the inhibition of these signalling pathways []. This entry contains YopJ and related proteins.
Probab=47.65 E-value=55 Score=21.16 Aligned_cols=61 Identities=11% Similarity=0.141 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhcCCCcccCCCCChhhhhhhhHHHHhhCCccchhhhhcchHHHHHHHHh
Q 042826 72 EKLGKVLDVYEERLSKSNYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIRDRKHVSAWWDDI 133 (146)
Q Consensus 72 ~~~~~~l~~le~~l~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~r~ 133 (146)
+.+..+.+.+++.++++.|+ ...++.-|+-+.+.+.........+.++.-+..-....+.+
T Consensus 2 ~~L~~y~~~~~~~~~~g~~~-~~~~~~~D~~~lp~lv~~~N~r~P~LnL~~~~~~~~~~~~i 62 (177)
T PF03421_consen 2 ESLKEYIERLEDDIKNGSWP-NESYAELDIKMLPALVAAENARYPGLNLHFFDSPEDFVQAI 62 (177)
T ss_pred hHHHHHHHHHHHHHHhCCCC-CcchhhhhHHHHHHHHHHHhhcCCCCceEEcCCcHHHHHHH
Confidence 35667788888999888888 67899999998888776554333333343333333334333
No 81
>PF11732 Thoc2: Transcription- and export-related complex subunit; InterPro: IPR021726 The THO/TREX complex is the transcription- and export-related complex associated with spliceosomes that preferentially deal with spliced mRNAs as opposed to unspliced mRNAs. Thoc2 plays a role in RNA polymerase II (RNA pol II)-dependent transcription and is required for the stability of DNA repeats []. In humans, the TRE complex is comprised of the exon-junction-associated proteins Aly/REF and UAP56 together with the THO proteins THOC1 (hHpr1/p84), Thoc2 (hRlr1), THOC3 (hTex1), THOC5 (fSAP79), THOC6 (fSAP35), and THOC7 (fSAP24). Although much evidence indicates that the function of the TREX complex as an adaptor between the mRNA and components of the export machinery is conserved among eukaryotes, in Drosophila the majority of mRNAs can be exported from the nucleus independently of the THO complex []. This entry represents a conserved domain found towards the N terminus of these proteins.
Probab=41.67 E-value=46 Score=18.32 Aligned_cols=45 Identities=16% Similarity=0.345 Sum_probs=27.4
Q ss_pred cCCCcccCCCCChhhhhhhhHHHHhhCCccchhhhhcchHHHHHHHHhc
Q 042826 86 SKSNYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIRDRKHVSAWWDDIS 134 (146)
Q Consensus 86 ~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~r~~ 134 (146)
+..+|+. .++ =|+..|+++.++....... .-+.--++..|.+++.
T Consensus 32 e~~ky~t--~l~-~DvL~~~ll~~L~~~~r~~-~k~dg~~~s~Wlq~La 76 (77)
T PF11732_consen 32 ESLKYFT--DLG-YDVLTFCLLERLSNPGRSR-LKDDGTNISQWLQSLA 76 (77)
T ss_pred HHHhhcc--hhh-HHHHHHHHHHHHhcccchh-cCcCCCCHHHHHHHHh
Confidence 3345553 233 4888888888876433222 2234468889998875
No 82
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=40.03 E-value=49 Score=16.94 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=19.4
Q ss_pred HHHHHHHHHhcCCCcccCCCC-Chhhhh
Q 042826 76 KVLDVYEERLSKSNYLAGDFF-SLADLS 102 (146)
Q Consensus 76 ~~l~~le~~l~~~~~l~G~~~-t~aD~~ 102 (146)
...+.+.+.+..+.|-.|+.+ |..+++
T Consensus 4 ~i~~~l~~~I~~g~~~~g~~lps~~~la 31 (64)
T PF00392_consen 4 QIYDQLRQAILSGRLPPGDRLPSERELA 31 (64)
T ss_dssp HHHHHHHHHHHTTSS-TTSBE--HHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCEeCCHHHHH
Confidence 455667777777889999987 998886
No 83
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=35.57 E-value=63 Score=16.77 Aligned_cols=21 Identities=14% Similarity=0.493 Sum_probs=15.7
Q ss_pred hHHHHHHHHhcCChhHHHHHh
Q 042826 124 KHVSAWWDDISNRPSWKKVLE 144 (146)
Q Consensus 124 p~l~~~~~r~~~~p~~~~~~~ 144 (146)
..+.++++++.+.|.+++-++
T Consensus 2 e~l~~Fl~~~~~d~~L~~~l~ 22 (64)
T TIGR03798 2 EQLKAFLEKVKTDPDLREKLK 22 (64)
T ss_pred HHHHHHHHHHHcCHHHHHHHH
Confidence 357788888888888877654
No 84
>COG4041 Predicted membrane protein [Function unknown]
Probab=33.95 E-value=24 Score=21.57 Aligned_cols=62 Identities=13% Similarity=0.173 Sum_probs=37.6
Q ss_pred HHHHHhcC--CCcccCCCCChhhhhhhhHHHHhhCCccchhhhh-cchHHHHHH-HHhcCChhHHHH
Q 042826 80 VYEERLSK--SNYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIR-DRKHVSAWW-DDISNRPSWKKV 142 (146)
Q Consensus 80 ~le~~l~~--~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~-~~p~l~~~~-~r~~~~p~~~~~ 142 (146)
.+|++=++ +.||.|+-.+..|......+.......... ... --..|.-|. .|+.+.|++.-+
T Consensus 47 ~ie~rggdlaggyfmgnivcspdasagtllasig~yl~g~-pegglvaallv~ignrlcadpgyagt 112 (171)
T COG4041 47 KIEDRGGDLAGGYFMGNIVCSPDASAGTLLASIGNYLMGG-PEGGLVAALLVWIGNRLCADPGYAGT 112 (171)
T ss_pred HHHHhCCccccceeecceeeCCCccchhHHHHhhhheecC-CcchHHHHHHHHHccccccCCCcccc
Confidence 45555444 689999999999998877766544222111 001 123566666 567777776543
No 85
>PF10990 DUF2809: Protein of unknown function (DUF2809); InterPro: IPR021257 Some members in this family of proteins are annotated as yjgA however currently no function for the protein is known.
Probab=32.66 E-value=30 Score=19.67 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=14.6
Q ss_pred CcccCCCCChhhhhhhh
Q 042826 89 NYLAGDFFSLADLSHLP 105 (146)
Q Consensus 89 ~~l~G~~~t~aD~~~~~ 105 (146)
..+.|+.++..|+..|.
T Consensus 71 ~lvLG~~F~w~Dll~Y~ 87 (91)
T PF10990_consen 71 RLVLGSTFDWWDLLAYA 87 (91)
T ss_pred HhhcCCCCCHHHHHHHH
Confidence 46899999999998774
No 86
>PF09098 Dehyd-heme_bind: Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding; InterPro: IPR015182 Quinohemoprotein amine dehydrogenases (QHNDH) 1.4.99 from EC) are enzymes produced in the periplasmic space of certain Gram-negative bacteria, such as Paracoccus denitrificans and Pseudomonas putida, in response to primary amines, including n-butylamine and benzylamine. QHNDH catalyses the oxidative deamination of a wide range of aliphatic and aromatic amines through formation of a Schiff-base intermediate involving one of the quinone O atoms []. Catalysis requires the presence of a novel redox cofactor, cysteine tryptophylquinone (CTQ). CTQ is derived from the post-translational modification of specific residues, which involves the oxidation of the indole ring of a tryptophan residue to form tryptophylquinone, followed by covalent cross-linking with a cysteine residue []. There is one CTQ per subunit in QHNDH. In addition to CTQ, two haem c cofactors are present in QHNDH that mediate the transfer of the substrate-derived electrons from CTQ to an external electron acceptor, cytochrome c-550 [, ]. QHNDH is a heterotrimer of alpha, beta and gamma subunits. The alpha and beta subunits contain signal peptides necessary for the translocation of QHNDH to the periplasm. The alpha subunit is composed of four domains - domain 1 forming a dihaem cytochrome, and domains 2-4 forming antiparallel beta-barrel structures; the beta subunit is a 7-bladed beta-propeller that provides part of the active site; and the small, catalytic gamma subunit contains the novel cross-linked CTQ cofactor, in addition to additional thioester cross-links between Cys and Asp/Glu residues that encage CTQ. The gamma subunit assumes a globular secondary structure with two short alpha-helices having many turns and bends []. This entry represents the dihaem cytochrome c domain of the QHNDH alpha subunit. The domain contain two cysteine residues that are involved in thioether linkages to haem []. ; PDB: 1PBY_A 1JJU_A 1JMZ_A 1JMX_A.
Probab=30.73 E-value=38 Score=21.64 Aligned_cols=12 Identities=33% Similarity=0.731 Sum_probs=10.1
Q ss_pred hhHHHHHHHHhc
Q 042826 2 RAIIRYYAEKYR 13 (146)
Q Consensus 2 ~aI~~yL~~~~~ 13 (146)
.+|++||++.+|
T Consensus 57 ~avVkYLAd~~G 68 (167)
T PF09098_consen 57 RAVVKYLADTQG 68 (167)
T ss_dssp HHHHHHHHHHT-
T ss_pred HHHHHHHHHccC
Confidence 489999999995
No 87
>COG2442 Uncharacterized conserved protein [Function unknown]
Probab=30.24 E-value=34 Score=18.93 Aligned_cols=35 Identities=14% Similarity=0.169 Sum_probs=18.9
Q ss_pred cCCCcccCCCCChhhhhhhhHHHHhhCCccchhhhhcchH
Q 042826 86 SKSNYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIRDRKH 125 (146)
Q Consensus 86 ~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~ 125 (146)
+|+|.+.|...+.-|+. .++......+..++.||.
T Consensus 21 gGkP~I~GtRI~V~~Il-----~~l~~G~s~eeil~dyp~ 55 (79)
T COG2442 21 GGKPCIRGTRIPVWDIL-----EMLAAGESIEEILADYPD 55 (79)
T ss_pred CCcceEeCceecHHHHH-----HHHHCCCCHHHHHHhCCC
Confidence 45677777777776664 333222222324566773
No 88
>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor. SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po
Probab=29.79 E-value=73 Score=17.39 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=15.1
Q ss_pred CCCHH--HHHHHHHHHHHhhhccC
Q 042826 21 GKTIE--ERGLVEQWLEVEAHNYH 42 (146)
Q Consensus 21 ~~~~~--~~~~~~~~~~~~~~~~~ 42 (146)
|.||. .+.+|.+|+.|+...+.
T Consensus 2 P~DP~~Wt~~~V~~WL~Wa~~ef~ 25 (75)
T cd08540 2 PADPTLWSTDHVRQWLEWAVKEYG 25 (75)
T ss_pred CCChhhcCHHHHHHHHHHHHHHhC
Confidence 44543 47789999998766553
No 89
>PF12362 DUF3646: DNA polymerase III gamma and tau subunits C terminal; InterPro: IPR022107 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00004 from PFAM. The proteins in this family are frequently annotated as the gamma and tau subunits of DNA polymerase III, however there is little accompanying literature to back this up.
Probab=28.30 E-value=51 Score=19.73 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=13.0
Q ss_pred HHHhcCChhHHHHHhhC
Q 042826 130 WDDISNRPSWKKVLELY 146 (146)
Q Consensus 130 ~~r~~~~p~~~~~~~~~ 146 (146)
.+.++++|-|+++++.|
T Consensus 92 ~~~a~~~P~V~avL~~F 108 (117)
T PF12362_consen 92 RAAARAHPLVKAVLAAF 108 (117)
T ss_pred HHHHHhCcHHHHHHHHC
Confidence 56778888888888765
No 90
>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors. SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=27.95 E-value=85 Score=17.12 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=15.2
Q ss_pred CCCHH--HHHHHHHHHHHhhhccC
Q 042826 21 GKTIE--ERGLVEQWLEVEAHNYH 42 (146)
Q Consensus 21 ~~~~~--~~~~~~~~~~~~~~~~~ 42 (146)
|.||. .+..|.+|+.|+...+.
T Consensus 2 P~DP~~Wt~~~V~~WL~Wa~~ef~ 25 (75)
T cd08531 2 PADPTLWTREHVRQWLEWAVKEYG 25 (75)
T ss_pred CCChhhcCHHHHHHHHHHHHHHcC
Confidence 44543 47789999998776554
No 91
>PF15368 BioT2: Spermatogenesis family BioT2
Probab=26.08 E-value=1.8e+02 Score=18.49 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhc
Q 042826 63 DEKLVKKSEEKLGKVLDVYEERLS 86 (146)
Q Consensus 63 ~~~~~~~~~~~~~~~l~~le~~l~ 86 (146)
.++.++.....++-+...||+..+
T Consensus 80 ~de~irkitkhLkmvVstLEeTyG 103 (170)
T PF15368_consen 80 EDEMIRKITKHLKMVVSTLEETYG 103 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344556666677777777777764
No 92
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=25.83 E-value=74 Score=19.49 Aligned_cols=23 Identities=13% Similarity=0.319 Sum_probs=15.1
Q ss_pred hhcchHHHHHHHHhcCChhHHHH
Q 042826 120 IRDRKHVSAWWDDISNRPSWKKV 142 (146)
Q Consensus 120 ~~~~p~l~~~~~r~~~~p~~~~~ 142 (146)
+..||+|..|..-|.=+|..-..
T Consensus 63 l~~yP~l~~WL~vVgl~~~~i~~ 85 (129)
T PF13543_consen 63 LNSYPSLRQWLRVVGLRPESIQA 85 (129)
T ss_pred cccCCcHHHHhhhcCCCHHHHHH
Confidence 45677777777777666554443
No 93
>PF10757 YbaJ: Biofilm formation regulator YbaJ; InterPro: IPR019693 YbaJ regulates biofilm formation. It also has an important role in the regulation of motility in the biofilm. YbaJ functions in increasing conjugation, aggregation and decreasing the motility, resulting in an increase of biofilm [].
Probab=24.80 E-value=77 Score=19.01 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=12.7
Q ss_pred HHHHHHHHhccCCCCCCCCCHHHHHHHHHHHH
Q 042826 4 IIRYYAEKYRSQGTELLGKTIEERGLVEQWLE 35 (146)
Q Consensus 4 I~~yL~~~~~~~~~~l~~~~~~~~~~~~~~~~ 35 (146)
|=+||++.| .|+++.......++.|..
T Consensus 76 ideYLDeTy-----~LFssy~In~~dL~~Wqk 102 (122)
T PF10757_consen 76 IDEYLDETY-----MLFSSYGINDSDLQKWQK 102 (122)
T ss_pred HHHHHHHHH-----HHhcCccCCHHHHHHHHH
Confidence 345555555 344444444444444443
No 94
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=23.51 E-value=3.1e+02 Score=20.26 Aligned_cols=89 Identities=18% Similarity=0.072 Sum_probs=43.2
Q ss_pred HHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 042826 4 IIRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDVYEE 83 (146)
Q Consensus 4 I~~yL~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~ 83 (146)
..++|.++|+- + .....+..-...+.|+..+...+..... .+..++..+..+..+...++..-.
T Consensus 220 ~a~~L~~~fGi--p-~~~~~p~G~~~t~~~l~~ia~~~g~~~~-------------~~~~~~~i~~e~~~~~~~l~~~~~ 283 (410)
T cd01968 220 LARKMEEKYGI--P-YIEVSFYGIRDTSKSLRNIAELLGDEEL-------------IERTEELIAREEARLRPELAPYRA 283 (410)
T ss_pred HHHHHHHHhCC--C-eEecCcCcHHHHHHHHHHHHHHhCCchh-------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888889853 2 2222334445555555544332211000 011233444455566666666667
Q ss_pred HhcCCCcccCCCCChhhhhhhhHHHH
Q 042826 84 RLSKSNYLAGDFFSLADLSHLPFTQY 109 (146)
Q Consensus 84 ~l~~~~~l~G~~~t~aD~~~~~~l~~ 109 (146)
.|++++..+...++.+ +.+.-++..
T Consensus 284 ~l~gkrv~i~~~~~~~-~~la~~l~e 308 (410)
T cd01968 284 RLEGKKAALYTGGVKS-WSLVSALQD 308 (410)
T ss_pred HhCCCEEEEEcCCchH-HHHHHHHHH
Confidence 7888775544334444 333334443
No 95
>PHA02776 E7 protein; Provisional
Probab=23.22 E-value=34 Score=19.91 Aligned_cols=12 Identities=25% Similarity=0.337 Sum_probs=10.5
Q ss_pred cCCCCChhhhhh
Q 042826 92 AGDFFSLADLSH 103 (146)
Q Consensus 92 ~G~~~t~aD~~~ 103 (146)
-|.++|+-||.+
T Consensus 2 ~G~~pTl~DIvL 13 (101)
T PHA02776 2 HGKHPTLKDIVL 13 (101)
T ss_pred CCCCCcHhHeee
Confidence 589999999986
No 96
>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family. SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.
Probab=23.18 E-value=1.2e+02 Score=16.41 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhhhccC
Q 042826 26 ERGLVEQWLEVEAHNYH 42 (146)
Q Consensus 26 ~~~~~~~~~~~~~~~~~ 42 (146)
.+..|.+|+.|+...+.
T Consensus 8 t~~~V~~WL~Wa~~ef~ 24 (71)
T cd08533 8 TETHVRQWLLWAVNEFS 24 (71)
T ss_pred CHHHHHHHHHHHHHHcC
Confidence 47788999998765443
No 97
>cd08542 SAM_PNT-ETS-1 Sterile alpha motif (SAM)/Pointed domain of ETS-1. SAM Pointed domain of ETS-1 subfamily of ETS transcriptional activators is a protein-protein interaction domain. The ETS-1 activator is regulated by phosphorylation. It contains a docking site for the ERK2 MAP (Mitogen Activated Protein) kinase, while the ERK2 phosphorylation site is located in the N-terminal disordered region upstream of the SAM Pointed domain. Mutations of the kinase docking site residues inhibit phosphorylation. ETS-1 activators play role in a number of different physiological processes, and they are expressed during embryonic development, including blood vessel formation, hematopoietic, lymphoid, neuronal and osteogenic differentiation. The Ets-1 gene is a proto-oncogene involved in progression of different tumors (including breast cancer, meningioma, and prostate cancer). Members of this subfamily are potential molecular targets for selective cancer therapy.
Probab=22.95 E-value=1.2e+02 Score=17.14 Aligned_cols=26 Identities=12% Similarity=0.198 Sum_probs=18.7
Q ss_pred CCCCCCCHH--HHHHHHHHHHHhhhccC
Q 042826 17 TELLGKTIE--ERGLVEQWLEVEAHNYH 42 (146)
Q Consensus 17 ~~l~~~~~~--~~~~~~~~~~~~~~~~~ 42 (146)
....|.+|. .+..|.+|+.|+...+.
T Consensus 12 rl~Ip~DP~~Wt~~~V~~WL~Wa~~ef~ 39 (88)
T cd08542 12 RLGIPKDPRQWTETHVRDWVMWAVNEFS 39 (88)
T ss_pred hcCCCCChhhCCHHHHHHHHHHHHHHcC
Confidence 345777775 47889999999766553
No 98
>PF07319 DnaI_N: Primosomal protein DnaI N-terminus; InterPro: IPR009928 This entry represents the N terminus (approximately 120 residues) of bacterial primosomal DnaI proteins, although one family member appears to be of viral origin. DnaI is one of the components of the Bacillus subtilis replication restart primosome, and is required for the DnaB75-dependent loading of the DnaC helicase [].; PDB: 2K7R_A.
Probab=22.68 E-value=1.5e+02 Score=16.78 Aligned_cols=22 Identities=9% Similarity=0.117 Sum_probs=15.9
Q ss_pred HHHHHHHHhcCChhHHHHHhhC
Q 042826 125 HVSAWWDDISNRPSWKKVLELY 146 (146)
Q Consensus 125 ~l~~~~~r~~~~p~~~~~~~~~ 146 (146)
+..+-.+.+.+.|.|++.++.|
T Consensus 20 ~~~~l~~~vl~dp~V~~Fl~~h 41 (94)
T PF07319_consen 20 RYEQLKQEVLSDPEVQAFLQEH 41 (94)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHS
T ss_pred HHHHHHHHHHcCHHHHHHHHHh
Confidence 4456678888899999888764
No 99
>TIGR02513 type_III_yscB type III secretion system chaperone, YscB family. Members of this family include YscB of Yersinia and functionally equivalent (but differently named) proteins from type III secretion systems of other pathogens that affect animal cells. YscB acts, along with SycN (TIGR02503), as a chaperone for YopN, a key part of a complex that regulates type III secretion so it responds to contact with the eukaryotic target cell.
Probab=22.66 E-value=94 Score=19.16 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCCCcccCC
Q 042826 76 KVLDVYEERLSKSNYLAGD 94 (146)
Q Consensus 76 ~~l~~le~~l~~~~~l~G~ 94 (146)
..++.+...|+.+||+.+.
T Consensus 2 ~llk~LA~~LGqgpFVAd~ 20 (139)
T TIGR02513 2 NLLKNLAARLGQGPFVADR 20 (139)
T ss_pred hHHHHHHHHhCCCCcccCC
Confidence 3577888899999998875
No 100
>cd08541 SAM_PNT-FLI-1 Sterile alpha motif (SAM)/Pointed domain of friend leukemia integration 1 transcription activator. SAM Pointed domain of FLI-1 (Friend Leukemia Integration) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The FLI-1 protein participates in regulation of cellular differentiation, proliferation, and survival. The Fli-1 gene was initially described in Friend virus-induced erythroleukemias as a site for virus integration. It is highly expressed in hematopoietic tissues and at lower level in lungs, heart, and ovaries. Fli-1 is a proto-oncogene implicated in Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=22.19 E-value=1.4e+02 Score=17.12 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=19.0
Q ss_pred CCCCCCCHH--HHHHHHHHHHHhhhccC
Q 042826 17 TELLGKTIE--ERGLVEQWLEVEAHNYH 42 (146)
Q Consensus 17 ~~l~~~~~~--~~~~~~~~~~~~~~~~~ 42 (146)
.-..|.+|. .+..|.+|+.|+...+.
T Consensus 10 rl~IP~DP~~Wt~~hV~~WL~Wa~~ef~ 37 (91)
T cd08541 10 RVIVPADPTLWTQEHVRQWLEWAIKEYG 37 (91)
T ss_pred eeeCCCChhhcCHHHHHHHHHHHHHHcC
Confidence 345777775 47889999999876554
No 101
>PRK10667 Hha toxicity attenuator; Provisional
Probab=22.19 E-value=97 Score=18.58 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=11.8
Q ss_pred HHHHHHHhccCCCCCCCCCHHHHHHHHHHHH
Q 042826 5 IRYYAEKYRSQGTELLGKTIEERGLVEQWLE 35 (146)
Q Consensus 5 ~~yL~~~~~~~~~~l~~~~~~~~~~~~~~~~ 35 (146)
=+||++.| .|+++.......++.|..
T Consensus 77 deYLDeTy-----~LF~sy~I~~~dl~~W~k 102 (122)
T PRK10667 77 DEYLDDTY-----MLFSSYGINDQDLQKWRK 102 (122)
T ss_pred HHHHHHHH-----HHhcCCCCCHHHHHHHHH
Confidence 34555555 344444434444444443
No 102
>cd07291 PX_SNX5 The phosphoinositide binding Phox Homology domain of Sorting Nexin 5. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting
Probab=21.79 E-value=42 Score=20.83 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=14.8
Q ss_pred hHHHHHHHHhcCChhHHH
Q 042826 124 KHVSAWWDDISNRPSWKK 141 (146)
Q Consensus 124 p~l~~~~~r~~~~p~~~~ 141 (146)
..+..|.+|+.+||.+++
T Consensus 113 a~lE~fL~Ria~HP~l~~ 130 (141)
T cd07291 113 QVHEVFLQRLSSHPSLSK 130 (141)
T ss_pred HHHHHHHHHHhhCCeecc
Confidence 458889999999998764
No 103
>PF04659 Arch_fla_DE: Archaeal flagella protein ; InterPro: IPR006752 Archaeal flagella are unique motility structures, and the absence of bacterial structural motility genes in the complete genome sequences of flagellated archaeal species has always suggested that archaeal flagellar biogenesis is likely mediated by novel components. FlaD and FlaE, are present in the cell as membrane-associated proteins but are not major components of isolated flagellar filaments. Interestingly, flaD was found to encode two proteins, each translated from a separate ribosome binding site. This group of sequences contain the archaeal flaD and flaE proteins. The conserved region that defines these sequences is found in the N-teminal region of flaE but towards the C-terminal region of flaD [].; GO: 0001539 ciliary or flagellar motility
Probab=21.79 E-value=1.7e+02 Score=16.94 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=11.5
Q ss_pred CcccC-CCCChhhhhhhhHHHHhh
Q 042826 89 NYLAG-DFFSLADLSHLPFTQYLV 111 (146)
Q Consensus 89 ~~l~G-~~~t~aD~~~~~~l~~~~ 111 (146)
+||.. .+=..+++.++-++.++.
T Consensus 6 ~~L~~iP~~~~s~~~~~eWLefLv 29 (99)
T PF04659_consen 6 PYLETIPEDYVSEIVVFEWLEFLV 29 (99)
T ss_pred chhhcCCcchHHHHHHHHHHHHHH
Confidence 34433 334555665555555554
No 104
>PF14084 DUF4264: Protein of unknown function (DUF4264)
Probab=21.73 E-value=70 Score=16.13 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhcCCCcccC
Q 042826 72 EKLGKVLDVYEERLSKSNYLAG 93 (146)
Q Consensus 72 ~~~~~~l~~le~~l~~~~~l~G 93 (146)
..+-++.+.|++.|+++..++|
T Consensus 14 ~dlYKvVDfLNktLK~~~lmFG 35 (52)
T PF14084_consen 14 DDLYKVVDFLNKTLKDKNLMFG 35 (52)
T ss_pred ccHHHHHHHHhhhhhhccEEEE
Confidence 3456778899999999888877
No 105
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=21.63 E-value=1.1e+02 Score=14.47 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=14.5
Q ss_pred cchHHHHHHHHhcCChhHHHHH
Q 042826 122 DRKHVSAWWDDISNRPSWKKVL 143 (146)
Q Consensus 122 ~~p~l~~~~~r~~~~p~~~~~~ 143 (146)
.-|+..+=.+-++++|.+++.+
T Consensus 12 ~ePH~~RRk~IL~k~PeIk~L~ 33 (39)
T PF08557_consen 12 DEPHASRRKEILKKHPEIKKLM 33 (39)
T ss_pred CCccHHHHHHHHHhChHHHHHh
Confidence 3466666666677777777654
No 106
>COG2249 MdaB Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]
Probab=21.59 E-value=23 Score=23.14 Aligned_cols=14 Identities=14% Similarity=0.380 Sum_probs=11.1
Q ss_pred chHHHHHHHHhcCC
Q 042826 123 RKHVSAWWDDISNR 136 (146)
Q Consensus 123 ~p~l~~~~~r~~~~ 136 (146)
.+-|+.|++||-+.
T Consensus 83 PaiLKg~iDrV~~~ 96 (189)
T COG2249 83 PALLKGWIDRVFTP 96 (189)
T ss_pred cHHHHHHHHHHhcC
Confidence 35899999999764
No 107
>PF10719 ComFB: Late competence development protein ComFB; InterPro: IPR019657 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. The development of genetic competence in Bacillus subtilis is a highly regulated adaptive response to stationary-phase stress. For competence to develop, the transcriptional regulator, ComK, must be activated. ComK is required for the expression of genes encoding proteins that function in DNA uptake. In log-phase cultures, ComK is inactive in a complex with MecA and ClpC. The comS gene is induced in response to high culture cell density and nutritional stress and its product functions to release active ComK from the complex. ComK then stimulates the transcription initiation of its own gene as well as that of the late competence operons []. The comF locus has three open reading frames and is driven by a single sigma A-like promoter in front of comFORF1. It is dependent on early regulatory competence genes and is only expressed in competence medium. ComFORF1 is similar to an extensive family of ATP-dependent RNA/DNA helicases with closer similarity to the DEAD protein subfamily and to the PriA protein in Escherichia coli. ComFORF1 late gene product plays an essential role during the binding and uptake events involved in B. subtilis transformation []. ComFB is the second protein encoded within the late competence locus ComF []. The function of ComFB within late competence development is not known.
Probab=20.90 E-value=1.2e+02 Score=16.68 Aligned_cols=32 Identities=22% Similarity=0.143 Sum_probs=20.7
Q ss_pred HHHHHHHhcCCCcccCCCCChhhhhhhhHHHHh
Q 042826 78 LDVYEERLSKSNYLAGDFFSLADLSHLPFTQYL 110 (146)
Q Consensus 78 l~~le~~l~~~~~l~G~~~t~aD~~~~~~l~~~ 110 (146)
.+.++..+.+.+=.+..+-+.+|++.+ .|..+
T Consensus 10 ~~~l~~~l~~~~~~c~c~~c~~Dv~al-aLN~L 41 (85)
T PF10719_consen 10 FEELDEYLEEYPDFCTCEDCLADVAAL-ALNRL 41 (85)
T ss_pred HHHHHHHHHhccccCCcHHHHHHHHHH-HHcCC
Confidence 445555554444466788999999876 55544
No 108
>PF00527 E7: E7 protein, Early protein; InterPro: IPR000148 This family includes the E7 oncoprotein from various papillomaviruses []. Along with E5 and E6 their activities seem to be especially important for viral oncogenesis. E5 is located at the cell surface and reduces cell gap-gap junction communication. In cervical cancer E5 is expressed in earlier stages of neoplastic transformation of the cervical epithelium during viral infection. The role of E7 is less well understood but it has been shown to impede growth arrest signals in both NIH 3T3 cells and HFKs and that this correlates with elevated cdc25A gene expression. This deregulation of cdc25A is linked to disruption of cell cycle arrest [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2F8B_A 2EWL_A 2B9D_A.
Probab=20.81 E-value=33 Score=19.54 Aligned_cols=12 Identities=25% Similarity=0.177 Sum_probs=0.0
Q ss_pred CCCCChhhhhhh
Q 042826 93 GDFFSLADLSHL 104 (146)
Q Consensus 93 G~~~t~aD~~~~ 104 (146)
|+++|+-||.+-
T Consensus 1 G~~ptl~DIvL~ 12 (92)
T PF00527_consen 1 GKEPTLKDIVLE 12 (92)
T ss_dssp ------------
T ss_pred CCCCccccEEee
Confidence 778999999764
No 109
>PF04827 Plant_tran: Plant transposon protein; InterPro: IPR006912 This entry represents a putative Harbinger transposase-derived nuclease, which is thought to have nuclease activity. However it does not have transposase activity [, ]. ; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=20.70 E-value=1.6e+02 Score=19.68 Aligned_cols=44 Identities=14% Similarity=0.145 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc--CCCcccCCCCChhhhhhhhHHH
Q 042826 65 KLVKKSEEKLGKVLDVYEERLS--KSNYLAGDFFSLADLSHLPFTQ 108 (146)
Q Consensus 65 ~~~~~~~~~~~~~l~~le~~l~--~~~~l~G~~~t~aD~~~~~~l~ 108 (146)
...+..++.+.+.+..|..++. .+|.-.=+.-++++|+..+++.
T Consensus 148 ~~QE~~RKDVErAFGVLQaRfaIi~~p~r~w~~~~l~~Im~aCiIL 193 (205)
T PF04827_consen 148 KHQESARKDVERAFGVLQARFAIIRGPARLWDREDLANIMRACIIL 193 (205)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHhcCchhccCHHHHHHHHHHHHHh
Confidence 3345567888899999999875 3554444667899998665544
No 110
>PF13227 DUF4035: Protein of unknown function (DUF4035)
Probab=20.11 E-value=71 Score=16.19 Aligned_cols=11 Identities=18% Similarity=0.147 Sum_probs=8.1
Q ss_pred CCCChhhhhhh
Q 042826 94 DFFSLADLSHL 104 (146)
Q Consensus 94 ~~~t~aD~~~~ 104 (146)
.++++.|++++
T Consensus 31 ~k~~l~D~mp~ 41 (53)
T PF13227_consen 31 KKPKLSDFMPF 41 (53)
T ss_pred CCCcHHHHHhh
Confidence 45899998644
Done!