AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on

Query Sequence

>042834
TSPPNGWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNL
GIQVAQNAKFLPIIVESDSKEVVDLARNRNCLSSLLSQ

High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT3G25270 AT3G25270 AT3G25270	protein from Arabidopsis thaliana	7.0e-05
BLAST match view associations BLAST with AT1G04625 AT1G04625 AT1G04625	protein from Arabidopsis thaliana	0.00019
BLAST match view associations BLAST with AT2G46460 AT2G46460 AT2G46460	protein from Arabidopsis thaliana	0.00024
BLAST match view associations BLAST with AT2G34320 AT2G34320 AT2G34320	protein from Arabidopsis thaliana	0.00040
BLAST match view associations BLAST with AT4G29090 AT4G29090 AT4G29090	protein from Arabidopsis thaliana	0.00085

The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  042834
        (98 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2090215 - symbol:AT3G25270 species:3702 "Arabi...   102  7.0e-05   1
TAIR|locus:2058379 - symbol:AT2G04420 species:3702 "Arabi...    98  8.0e-05   1
TAIR|locus:1006230762 - symbol:AT1G04625 species:3702 "Ar...    96  0.00019   1
TAIR|locus:2039129 - symbol:AT2G46460 species:3702 "Arabi...    90  0.00024   1
TAIR|locus:2040899 - symbol:AT2G34320 species:3702 "Arabi...    94  0.00040   1
TAIR|locus:2119886 - symbol:AT4G29090 species:3702 "Arabi...    95  0.00085   1


>TAIR|locus:2090215 [details] [associations]
            symbol:AT3G25270 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR012337 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0003676 SUPFAM:SSF53098
            GO:GO:0003964 EMBL:AB026647 InterPro:IPR026960 Pfam:PF13966
            ProtClustDB:CLSN2683699 IPI:IPI00534975 RefSeq:NP_189164.1
            UniGene:At.65153 ProteinModelPortal:Q9LSE9 SMR:Q9LSE9 PRIDE:Q9LSE9
            EnsemblPlants:AT3G25270.1 GeneID:822121 KEGG:ath:AT3G25270
            TAIR:At3g25270 eggNOG:NOG293377 InParanoid:Q9LSE9 OMA:ESETAFH
            PhylomeDB:Q9LSE9 Genevestigator:Q9LSE9 Uniprot:Q9LSE9
        Length = 343

 Score = 102 (41.0 bits), Expect = 7.0e-05, P = 7.0e-05
 Identities = 26/86 (30%), Positives = 40/86 (46%)

Query:     3 PPNGWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGI 62
             PP+ W K N D A     + A  G ++RD  G  + +     S   D    E  A+ + +
Sbjct:   189 PPSTWIKYNYDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSDSLESEFQALIIAM 248

Query:    63 QVAQNAKFLPIIVESDSKEVVDLARN 88
             Q A +  +  +I E DSK+V +L  N
Sbjct:   249 QHAWSQGYRKVIFEGDSKQVEELMNN 274


>TAIR|locus:2058379 [details] [associations]
            symbol:AT2G04420 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004523
            "ribonuclease H activity" evidence=IEA] InterPro:IPR012337
            EMBL:CP002685 GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0003964
            EMBL:AC006951 EMBL:AY649241 IPI:IPI00543252 PIR:D84457
            RefSeq:NP_178523.1 UniGene:At.41314 ProteinModelPortal:Q9SJC7
            EnsemblPlants:AT2G04420.1 GeneID:814982 KEGG:ath:AT2G04420
            TAIR:At2g04420 InParanoid:Q9SJC7 PhylomeDB:Q9SJC7
            ArrayExpress:Q9SJC7 Genevestigator:Q9SJC7 Uniprot:Q9SJC7
        Length = 221

 Score = 98 (39.6 bits), Expect = 8.0e-05, P = 8.0e-05
 Identities = 26/87 (29%), Positives = 38/87 (43%)

Query:     3 PPNGWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGI 62
             PP GW K N D +     Q    G +IRD +G    A         +    E  A+ + +
Sbjct:    66 PPMGWIKCNYDGSFNYRTQQTNSGWLIRDDKGFYKGAAQAVGGTMNNALESELQALVMAM 125

Query:    63 QVAQNAKFLPIIVESDSKEVVDLARNR 89
             Q   +  +  +I E DSK+V +L  NR
Sbjct:   126 QHTWSQGYRKVIFEGDSKQVEELL-NR 151


>TAIR|locus:1006230762 [details] [associations]
            symbol:AT1G04625 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR012337 EMBL:CP002684 GO:GO:0003676
            SUPFAM:SSF53098 UniGene:At.20547 IPI:IPI00938819
            RefSeq:NP_001154303.1 UniGene:At.74715 ProteinModelPortal:F4I5Q9
            EnsemblPlants:AT1G04625.1 GeneID:3766658 KEGG:ath:AT1G04625
            Uniprot:F4I5Q9
        Length = 257

 Score = 96 (38.9 bits), Expect = 0.00019, P = 0.00019
 Identities = 26/90 (28%), Positives = 42/90 (46%)

Query:     1 TSPPNGWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNL 60
             T+PP GW K N D     S+  +  G ++RD RG  + A     S   +    E  A+ +
Sbjct:    83 TTPPIGWTKCNYDGTYH-SNAPSKAGWLLRDDRGTFLGAAHAIGSITTNPMESELQALVM 141

Query:    61 GIQVAQNAKFLPIIVESDSKEVVDLARNRN 90
              +Q   +  +  I  E D+KEV ++   R+
Sbjct:   142 AMQHCWSRGYRKIYFEGDNKEVSEIVNGRS 171


>TAIR|locus:2039129 [details] [associations]
            symbol:AT2G46460 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR012337 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0003676 SUPFAM:SSF53098
            EMBL:AC006526 ProtClustDB:CLSN2683462 HOGENOM:HOG000131738
            IPI:IPI00522492 PIR:B84903 RefSeq:NP_182169.1 UniGene:At.53138
            ProteinModelPortal:Q9SKD4 EnsemblPlants:AT2G46460.1 GeneID:819255
            KEGG:ath:AT2G46460 TAIR:At2g46460 InParanoid:Q9SKD4 OMA:CNYDGSY
            PhylomeDB:Q9SKD4 Genevestigator:Q9SKD4 Uniprot:Q9SKD4
        Length = 160

 Score = 90 (36.7 bits), Expect = 0.00024, P = 0.00024
 Identities = 25/89 (28%), Positives = 42/89 (47%)

Query:     1 TSPPNGWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNL 60
             T PP+GW K N D +    +  +  G IIRD  G+ V+A     +   +    E  A+ +
Sbjct:     4 TRPPHGWKKCNYDGSYN-REMPSKAGWIIRDESGQFVSAGQATGNHTSNALESEFQALLI 62

Query:    61 GIQVAQNAKFLPIIVESDSKEVVDLARNR 89
              +Q   +     I  E D++EV+++   R
Sbjct:    63 TMQSCWSHGHRKIWFEGDNREVMEILNRR 91


>TAIR|locus:2040899 [details] [associations]
            symbol:AT2G34320 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR012337 EMBL:CP002685 GO:GO:0003676
            SUPFAM:SSF53098 GO:GO:0003964 EMBL:AC004481 EMBL:DQ446597
            IPI:IPI00534878 PIR:T02320 RefSeq:NP_180979.1 UniGene:At.66309
            ProteinModelPortal:O80781 EnsemblPlants:AT2G34320.1 GeneID:817994
            KEGG:ath:AT2G34320 TAIR:At2g34320 InParanoid:O80781 OMA:WILDISG
            PhylomeDB:O80781 ProtClustDB:CLSN2683532 ArrayExpress:O80781
            Genevestigator:O80781 Uniprot:O80781
        Length = 292

 Score = 94 (38.1 bits), Expect = 0.00040, P = 0.00040
 Identities = 23/84 (27%), Positives = 40/84 (47%)

Query:     2 SPPNGWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLG 61
             +PP  W K N DA  +L +   G+G I+R+  G  +    + +    +V   E  A+   
Sbjct:   139 APPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAELEALRWA 198

Query:    62 IQVAQNAKFLPIIVESDSKEVVDL 85
             +       +  II ESD++ +V+L
Sbjct:   199 VLTMSRFNYKRIIFESDAQALVNL 222


>TAIR|locus:2119886 [details] [associations]
            symbol:AT4G29090 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=ISS] [GO:0003964 "RNA-directed DNA polymerase
            activity" evidence=ISS] [GO:0005739 "mitochondrion" evidence=ISM]
            [GO:0006278 "RNA-dependent DNA replication" evidence=ISS]
            InterPro:IPR012337 EMBL:CP002687 GenomeReviews:CT486007_GR
            EMBL:AL078470 EMBL:AL161574 GO:GO:0003676 SUPFAM:SSF53098
            GO:GO:0003964 InterPro:IPR026960 Pfam:PF13966
            ProtClustDB:CLSN2683532 EMBL:DQ056660 IPI:IPI00548066 PIR:T08964
            RefSeq:NP_194638.1 UniGene:At.54541 ProteinModelPortal:Q9SZD8
            EnsemblPlants:AT4G29090.1 GeneID:829030 KEGG:ath:AT4G29090
            TAIR:At4g29090 eggNOG:NOG253635 HOGENOM:HOG000201014
            InParanoid:Q9SZD8 OMA:KESACIR PhylomeDB:Q9SZD8 ArrayExpress:Q9SZD8
            Genevestigator:Q9SZD8 Uniprot:Q9SZD8
        Length = 575

 Score = 95 (38.5 bits), Expect = 0.00085, P = 0.00085
 Identities = 22/93 (23%), Positives = 43/93 (46%)

Query:     3 PPNGWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGI 62
             PP+ W K N DA     ++  G+G ++R+ +G+      + +     V   E  A+   +
Sbjct:   423 PPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMRWAV 482

Query:    63 QVAQNAKFLPIIVESDSKEVVDLARNRNCLSSL 95
                   ++  +I ESDS+ ++++  N     SL
Sbjct:   483 LSLSRFQYNYVIFESDSQVLIEILNNDEIWPSL 515


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.130   0.357    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       98        98   0.00091  102 3  11 22  0.39    30
                                                     29  0.45    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  513 (55 KB)
  Total size of DFA:  91 KB (2067 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.65u 0.16s 8.81t   Elapsed:  00:00:00
  Total cpu time:  8.65u 0.16s 8.81t   Elapsed:  00:00:00
  Start:  Sat May 11 04:05:07 2013   End:  Sat May 11 04:05:07 2013

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the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data