BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042834
(98 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q47VJ4|MURA_COLP3 UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Colwellia
psychrerythraea (strain 34H / ATCC BAA-681) GN=murA PE=3
SV=1
Length = 420
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 13/79 (16%)
Query: 19 SDQTAGLGVIIRDSRGKAVAATV--QKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVE 76
+D T G I+ +G+ AT+ VS G M AAA+ GI + +NA P
Sbjct: 136 ADITVEDGYIVAKKQGRLTGATIFMDTVSVTGTENLMMAAALAEGITIIENAAREP---- 191
Query: 77 SDSKEVVDLARNRNCLSSL 95
E+VDLA NCL S+
Sbjct: 192 ----EIVDLA---NCLISM 203
>sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana
GN=At1g65750 PE=3 SV=1
Length = 620
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 2 SPPNGWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLG 61
SP GW KVN D A + + A G ++RD G + R E V G
Sbjct: 454 SPCVGWVKVNTDGASRGNPGLASAGGVLRDCTGAWCGGFSLNIG-RCSAPQAELWGVYYG 512
Query: 62 IQVAQNAKFLPIIVESDSKEVV 83
+ A K + +E DS+ +V
Sbjct: 513 LYFAWEKKVPRVELEVDSEVIV 534
>sp|P57766|PCNA2_SULSO DNA polymerase sliding clamp B OS=Sulfolobus solfataricus (strain
ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=pcnB PE=1
SV=1
Length = 249
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 14 AAIKLSDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPI 73
A I+L++ +GL +IIRD + A +T+ + +G V + VNL + + L +
Sbjct: 87 ATIELTETDSGLKIIIRDEKSGA-KSTIYIKAEKGQVEQLTEPKVNLAVNFTTDESVLNV 145
Query: 74 I 74
I
Sbjct: 146 I 146
>sp|Q5ZJZ5|BDH_CHICK D-beta-hydroxybutyrate dehydrogenase, mitochondrial OS=Gallus
gallus GN=BDH1 PE=2 SV=1
Length = 339
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 12 VDAAIK-----LSDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQ 66
VD A++ L D GL ++ + A +T +V F YME A VNL V
Sbjct: 116 VDRAVEHVNSSLEDPEKGLWGLVNN----AGISTFGEVEFTSMDTYMEVAEVNLWGTVRT 171
Query: 67 NAKFLPIIVESDSKEV 82
FLP+I S + V
Sbjct: 172 TKAFLPLIRRSKGRVV 187
>sp|Q9JWN3|GLMU_NEIMA Bifunctional protein GlmU OS=Neisseria meningitidis serogroup A /
serotype 4A (strain Z2491) GN=glmU PE=3 SV=1
Length = 456
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 23 AGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKF 70
+GLG IIRDS G A +K D A +N GI V NAK
Sbjct: 135 SGLGRIIRDSSGSVTAIVEEK---DADAAQKAVKEINTGILVLPNAKL 179
>sp|Q9JHH9|COPZ2_MOUSE Coatomer subunit zeta-2 OS=Mus musculus GN=Copz2 PE=2 SV=1
Length = 205
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 7 WFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQ 66
W N+D A + D+T GVI+ + +QKV+FR D + + +V QV Q
Sbjct: 141 WLLENMDGAFLVLDETVDGGVILESDPQQV----IQKVNFRTDDSGLTEQSV---AQVLQ 193
Query: 67 NAK 69
+AK
Sbjct: 194 SAK 196
>sp|C3PNZ9|RSMH_RICAE Ribosomal RNA small subunit methyltransferase H OS=Rickettsia
africae (strain ESF-5) GN=rsmH PE=3 SV=1
Length = 307
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 1 TSPPNGWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQ 42
T PN W K+ + A+ SD+ GL + R ++ +A A +
Sbjct: 266 TIDPNKWLKIITNKALAPSDKEVGLNIRARSAKLRAAKAIYE 307
>sp|A8F247|RSMH_RICM5 Ribosomal RNA small subunit methyltransferase H OS=Rickettsia
massiliae (strain Mtu5) GN=rsmH PE=3 SV=1
Length = 307
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 1 TSPPNGWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQ 42
T PN W K+ + A+ SD+ GL + R ++ +A A +
Sbjct: 266 TIDPNKWLKIITNKALASSDKEVGLNIRARSAKLRAAKAIYE 307
>sp|Q92HB4|RSMH_RICCN Ribosomal RNA small subunit methyltransferase H OS=Rickettsia
conorii (strain ATCC VR-613 / Malish 7) GN=rsmH PE=3
SV=1
Length = 307
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 1 TSPPNGWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQ 42
T PN W K+ + A+ SD+ GL + R ++ +A A +
Sbjct: 266 TIDPNKWLKIITNKALAPSDKEVGLNIRARSAKLRAAKAIYE 307
>sp|A8GSS6|RSMH_RICRS Ribosomal RNA small subunit methyltransferase H OS=Rickettsia
rickettsii (strain Sheila Smith) GN=rsmH PE=3 SV=2
Length = 307
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 1 TSPPNGWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQ 42
T PN W K+ + A+ SD+ GL + R ++ +A A +
Sbjct: 266 TIDPNKWLKIITNKALAPSDKEVGLNIRARSAKLRAAKAIYE 307
>sp|B0BYA0|RSMH_RICRO Ribosomal RNA small subunit methyltransferase H OS=Rickettsia
rickettsii (strain Iowa) GN=rsmH PE=3 SV=1
Length = 307
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 1 TSPPNGWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQ 42
T PN W K+ + A+ SD+ GL + R ++ +A A +
Sbjct: 266 TIDPNKWLKIITNKALAPSDKEVGLNIRARSAKLRAAKAIYE 307
>sp|Q9SMR2|TBCC_ARATH Tubulin-folding cofactor C OS=Arabidopsis thaliana GN=POR PE=1 SV=1
Length = 345
Score = 28.9 bits (63), Expect = 9.7, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 17 KLSDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPII-V 75
K SD + I +SR +++ + D+A + A NL +A+N+ FLP V
Sbjct: 59 KFSDSKRSIESRIAESR--LASSSTDSSKLKSDLAEISVAIDNLEKLLAENSYFLPSYEV 116
Query: 76 ESDSKEVVDLARNRNCLSSLL 96
S K V DL ++ + LS L
Sbjct: 117 RSSLKIVSDLKQSLDILSGEL 137
>sp|C4K1M0|RSMH_RICPU Ribosomal RNA small subunit methyltransferase H OS=Rickettsia
peacockii (strain Rustic) GN=rsmH PE=3 SV=1
Length = 307
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 1 TSPPNGWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQ 42
T PN W K+ + A+ SD+ GL + R ++ +A A +
Sbjct: 266 TIDPNKWLKIITNKALAPSDKEVGLNIRARSAKLRAAKAIYE 307
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,229,795
Number of Sequences: 539616
Number of extensions: 923736
Number of successful extensions: 3244
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3237
Number of HSP's gapped (non-prelim): 18
length of query: 98
length of database: 191,569,459
effective HSP length: 67
effective length of query: 31
effective length of database: 155,415,187
effective search space: 4817870797
effective search space used: 4817870797
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)