Query 042834
Match_columns 98
No_of_seqs 181 out of 1068
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 10:00:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042834.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042834hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13907 rnhA ribonuclease H; 99.9 5.1E-21 1.1E-25 118.2 9.1 82 7-91 1-82 (128)
2 PRK07708 hypothetical protein; 99.8 5.3E-18 1.1E-22 113.4 10.0 92 3-94 69-164 (219)
3 COG0328 RnhA Ribonuclease HI [ 99.7 8.1E-17 1.8E-21 102.2 9.7 79 6-87 2-80 (154)
4 PRK07238 bifunctional RNase H/ 99.7 7E-17 1.5E-21 115.0 10.2 86 7-93 2-88 (372)
5 cd06222 RnaseH RNase H (RNase 99.7 4.7E-16 1E-20 93.3 9.5 82 9-91 1-82 (130)
6 PRK08719 ribonuclease H; Revie 99.5 4E-13 8.8E-18 85.1 8.7 78 6-87 3-83 (147)
7 PF13456 RVT_3: Reverse transc 99.4 3.3E-13 7.1E-18 77.4 5.6 47 50-96 1-47 (87)
8 PRK00203 rnhA ribonuclease H; 99.4 1.5E-12 3.2E-17 82.6 8.3 77 7-88 3-79 (150)
9 PRK06548 ribonuclease H; Provi 99.4 2.9E-12 6.3E-17 82.2 9.2 75 7-88 5-79 (161)
10 PF00075 RNase_H: RNase H; In 99.4 1.2E-11 2.7E-16 75.9 9.5 74 6-88 2-75 (132)
11 KOG3752 Ribonuclease H [Replic 98.9 6.7E-09 1.5E-13 73.6 8.2 80 6-87 211-293 (371)
12 KOG1812 Predicted E3 ubiquitin 95.3 0.015 3.3E-07 42.2 2.6 69 21-89 17-88 (384)
13 COG0295 Cdd Cytidine deaminase 94.9 0.24 5.2E-06 31.0 6.8 69 21-90 24-102 (134)
14 COG0590 CumB Cytosine/adenosin 93.9 0.24 5.2E-06 31.5 5.3 57 21-77 26-83 (152)
15 cd01285 nucleoside_deaminase N 92.6 0.67 1.4E-05 27.6 5.7 44 21-64 15-59 (109)
16 cd01284 Riboflavin_deaminase-r 91.9 0.8 1.7E-05 27.8 5.4 41 21-64 17-57 (115)
17 TIGR01354 cyt_deam_tetra cytid 91.8 0.5 1.1E-05 29.1 4.5 57 21-78 19-75 (127)
18 cd00786 cytidine_deaminase-lik 91.5 1.3 2.9E-05 25.7 5.9 44 20-63 15-60 (96)
19 cd01283 cytidine_deaminase Cyt 91.2 0.77 1.7E-05 27.3 4.9 45 20-64 15-59 (112)
20 PF00383 dCMP_cyt_deam_1: Cyti 87.7 1.1 2.4E-05 25.9 3.6 46 19-64 20-66 (102)
21 TIGR02571 ComEB ComE operon pr 86.8 3.3 7.1E-05 26.3 5.6 67 22-89 24-131 (151)
22 PHA02588 cd deoxycytidylate de 84.0 9.1 0.0002 24.7 7.2 29 50-78 81-131 (168)
23 PRK10860 tRNA-specific adenosi 83.6 4.4 9.5E-05 26.3 5.1 41 22-63 32-73 (172)
24 PF05830 NodZ: Nodulation prot 82.0 4.4 9.5E-05 29.0 4.9 66 20-89 165-233 (321)
25 PRK12411 cytidine deaminase; P 80.6 6.5 0.00014 24.4 4.9 57 21-78 22-78 (132)
26 PRK05578 cytidine deaminase; V 78.3 9 0.00019 23.8 5.0 65 22-87 23-97 (131)
27 cd01286 deoxycytidylate_deamin 76.8 10 0.00023 23.3 5.0 41 22-63 19-81 (131)
28 PRK06848 hypothetical protein; 76.3 8.1 0.00018 24.2 4.5 56 21-77 25-80 (139)
29 TIGR00326 eubact_ribD riboflav 73.5 4.7 0.0001 28.8 3.2 36 24-63 20-55 (344)
30 KOG1018 Cytosine deaminase FCY 70.8 15 0.00033 23.8 4.9 48 22-69 31-79 (169)
31 KOG3343 Vesicle coat complex C 64.9 24 0.00051 23.0 4.7 39 55-93 91-150 (175)
32 COG0117 RibD Pyrimidine deamin 63.7 14 0.0003 23.6 3.5 34 24-61 29-62 (146)
33 PF11080 DUF2622: Protein of u 61.9 18 0.00039 21.4 3.6 42 22-63 32-73 (96)
34 PRK10786 ribD bifunctional dia 60.6 14 0.00031 26.8 3.6 36 24-63 26-61 (367)
35 PRK08298 cytidine deaminase; V 58.7 38 0.00082 21.2 4.8 52 24-76 24-75 (136)
36 KOG3139 N-acetyltransferase [G 58.3 14 0.00031 24.0 2.9 22 58-79 106-127 (165)
37 PLN02807 diaminohydroxyphospho 56.1 18 0.00039 26.5 3.5 35 25-63 56-90 (380)
38 PF06006 DUF905: Bacterial pro 55.7 24 0.00051 19.6 3.1 25 18-42 26-50 (70)
39 PRK15000 peroxidase; Provision 54.7 44 0.00095 22.0 4.9 63 24-88 125-195 (200)
40 PRK13191 putative peroxiredoxi 54.2 43 0.00094 22.3 4.9 42 26-69 126-167 (215)
41 COG3981 Predicted acetyltransf 53.2 25 0.00055 23.0 3.5 79 2-81 60-142 (174)
42 PRK12295 hisZ ATP phosphoribos 49.3 84 0.0018 22.9 6.0 63 23-86 86-151 (373)
43 cd01269 PLX Pollux (PLX) Phosp 49.2 59 0.0013 20.3 4.4 45 19-65 80-124 (129)
44 PRK10382 alkyl hydroperoxide r 48.9 61 0.0013 21.2 4.8 41 26-68 121-161 (187)
45 PTZ00137 2-Cys peroxiredoxin; 48.0 55 0.0012 22.8 4.7 42 26-69 190-231 (261)
46 PRK13190 putative peroxiredoxi 46.9 69 0.0015 21.0 4.9 43 25-69 118-160 (202)
47 PLN02660 pantoate--beta-alanin 46.0 35 0.00076 24.1 3.5 37 28-67 181-217 (284)
48 cd03015 PRX_Typ2cys Peroxiredo 45.2 77 0.0017 19.9 5.3 43 26-70 122-164 (173)
49 PRK14828 undecaprenyl pyrophos 44.6 43 0.00093 23.2 3.8 54 23-79 28-81 (256)
50 TIGR00443 hisZ_biosyn_reg ATP 44.6 1.1E+02 0.0024 21.5 6.6 65 22-88 90-160 (314)
51 PF10983 DUF2793: Protein of u 44.1 63 0.0014 18.6 4.4 37 5-41 48-84 (87)
52 PF00336 DNA_pol_viral_C: DNA 44.0 24 0.00051 24.0 2.3 53 20-83 101-153 (245)
53 PF03259 Robl_LC7: Roadblock/L 43.7 56 0.0012 17.9 5.0 51 24-80 15-74 (91)
54 PLN02182 cytidine deaminase 43.7 56 0.0012 23.8 4.3 42 21-62 64-107 (339)
55 TIGR00018 panC pantoate--beta- 43.2 37 0.0008 23.9 3.3 38 27-67 177-214 (282)
56 TIGR03693 ocin_ThiF_like putat 42.2 29 0.00063 27.3 2.8 38 2-42 4-41 (637)
57 PLN02402 cytidine deaminase 42.1 65 0.0014 23.1 4.4 66 21-87 44-115 (303)
58 cd00773 HisRS-like_core Class 41.4 1.1E+02 0.0024 20.7 7.2 66 21-88 84-155 (261)
59 COG1212 KdsB CMP-2-keto-3-deox 41.3 58 0.0013 22.5 3.9 33 58-90 31-63 (247)
60 TIGR00055 uppS undecaprenyl di 40.7 53 0.0011 22.4 3.7 47 28-77 5-51 (226)
61 PF14524 Wzt_C: Wzt C-terminal 40.4 49 0.0011 19.6 3.3 36 6-41 35-70 (142)
62 PRK14837 undecaprenyl pyrophos 39.1 59 0.0013 22.3 3.7 47 28-77 12-58 (230)
63 PF04775 Bile_Hydr_Trans: Acyl 39.0 11 0.00024 23.1 0.2 44 22-67 32-75 (126)
64 PF15374 CCDC71L: Coiled-coil 38.9 40 0.00087 24.8 3.0 26 49-77 35-60 (376)
65 PRK09027 cytidine deaminase; P 38.6 75 0.0016 22.6 4.2 67 21-88 69-141 (295)
66 CHL00139 rpl18 ribosomal prote 38.0 91 0.002 18.7 6.3 52 25-77 28-86 (109)
67 PRK14827 undecaprenyl pyrophos 37.9 53 0.0011 23.4 3.4 51 24-78 70-120 (296)
68 cd03016 PRX_1cys Peroxiredoxin 37.9 1.2E+02 0.0025 19.9 5.6 42 26-69 119-160 (203)
69 PRK14833 undecaprenyl pyrophos 37.8 62 0.0013 22.2 3.6 47 28-77 10-56 (233)
70 PRK12292 hisZ ATP phosphoribos 37.3 1.6E+02 0.0035 21.4 6.4 65 22-88 101-171 (391)
71 PRK14841 undecaprenyl pyrophos 37.3 64 0.0014 22.1 3.7 47 28-77 9-55 (233)
72 PF04339 DUF482: Protein of un 37.3 1.6E+02 0.0036 21.6 5.9 53 19-74 259-311 (370)
73 PLN02706 glucosamine 6-phospha 37.1 62 0.0013 19.4 3.4 25 57-81 106-130 (150)
74 COG0450 AhpC Peroxiredoxin [Po 36.6 1.3E+02 0.0028 20.1 6.4 49 19-69 119-167 (194)
75 PF14437 MafB19-deam: MafB19-l 36.1 1.2E+02 0.0025 19.4 4.8 34 49-87 79-115 (146)
76 PTZ00349 dehydrodolichyl dipho 35.9 66 0.0014 23.2 3.7 47 28-77 25-71 (322)
77 KOG0833 Cytidine deaminase [Nu 35.1 1.1E+02 0.0024 20.1 4.3 43 21-63 40-82 (173)
78 PRK13599 putative peroxiredoxi 34.6 1.4E+02 0.003 19.9 4.9 42 26-69 121-162 (215)
79 COG3142 CutC Uncharacterized p 34.6 1.2E+02 0.0027 20.9 4.6 40 24-75 53-92 (241)
80 PRK14839 undecaprenyl pyrophos 34.5 69 0.0015 22.1 3.5 52 23-78 11-62 (239)
81 TIGR00442 hisS histidyl-tRNA s 34.5 1.7E+02 0.0037 21.1 5.7 58 22-81 100-163 (397)
82 PF10115 HlyU: Transcriptional 34.4 1E+02 0.0022 18.1 6.2 49 21-69 38-87 (91)
83 TIGR02608 delta_60_rpt delta-6 34.3 41 0.0009 17.6 1.9 18 7-24 31-48 (55)
84 PRK14829 undecaprenyl pyrophos 33.9 76 0.0016 21.8 3.6 52 23-78 16-67 (243)
85 PF01026 TatD_DNase: TatD rela 33.7 47 0.001 22.5 2.6 20 61-80 188-207 (255)
86 cd00475 CIS_IPPS Cis (Z)-Isopr 33.3 74 0.0016 21.6 3.5 47 28-77 6-52 (221)
87 TIGR01355 cyt_deam_dimer cytid 33.3 1.1E+02 0.0025 21.6 4.5 66 21-87 41-112 (283)
88 TIGR03137 AhpC peroxiredoxin. 33.0 1.4E+02 0.003 19.2 5.1 41 26-68 121-161 (187)
89 PRK14832 undecaprenyl pyrophos 32.6 84 0.0018 21.8 3.7 47 28-77 24-70 (253)
90 TIGR02743 TraW type-F conjugat 32.6 38 0.00083 22.7 2.0 73 9-88 85-167 (202)
91 PRK13719 conjugal transfer tra 32.4 35 0.00077 23.2 1.8 19 25-43 30-48 (217)
92 PRK14840 undecaprenyl pyrophos 31.2 1E+02 0.0022 21.4 3.9 49 28-77 24-74 (250)
93 PLN02530 histidine-tRNA ligase 31.0 2.3E+02 0.0051 21.4 6.8 63 22-86 167-237 (487)
94 PF14094 DUF4272: Domain of un 30.9 30 0.00065 23.2 1.3 34 55-90 103-136 (209)
95 PRK11449 putative deoxyribonuc 30.7 35 0.00077 23.4 1.6 19 63-81 192-210 (258)
96 PF03932 CutC: CutC family; I 30.6 1.3E+02 0.0028 20.1 4.2 40 24-75 52-91 (201)
97 TIGR00857 pyrC_multi dihydroor 30.6 1.5E+02 0.0032 21.6 4.9 39 48-86 191-229 (411)
98 PRK14834 undecaprenyl pyrophos 30.4 98 0.0021 21.4 3.7 53 23-79 16-68 (249)
99 PRK13189 peroxiredoxin; Provis 30.1 1.7E+02 0.0037 19.5 5.4 42 26-69 128-169 (222)
100 PF02569 Pantoate_ligase: Pant 30.1 50 0.0011 23.3 2.3 38 28-68 176-213 (280)
101 PRK14835 undecaprenyl pyrophos 30.1 1E+02 0.0022 21.7 3.8 52 24-79 44-95 (275)
102 PRK14842 undecaprenyl pyrophos 29.9 97 0.0021 21.3 3.6 48 28-78 14-61 (241)
103 COG0414 PanC Panthothenate syn 29.7 85 0.0018 22.3 3.3 38 28-68 177-214 (285)
104 PF03308 ArgK: ArgK protein; 29.7 99 0.0021 21.7 3.6 41 32-77 89-129 (266)
105 PRK14831 undecaprenyl pyrophos 29.3 93 0.002 21.5 3.5 53 23-79 22-74 (249)
106 KOG4609 Predicted phosphoglyce 29.3 1.1E+02 0.0023 21.3 3.6 34 1-42 238-271 (284)
107 COG3341 Predicted double-stran 29.2 1.9E+02 0.0042 19.8 5.2 83 6-90 64-153 (225)
108 TIGR01355 cyt_deam_dimer cytid 29.0 1.4E+02 0.0031 21.1 4.3 52 21-72 193-244 (283)
109 PRK14838 undecaprenyl pyrophos 28.4 1.1E+02 0.0023 21.2 3.6 47 28-77 16-62 (242)
110 PRK07627 dihydroorotase; Provi 28.2 1.6E+02 0.0034 21.8 4.7 38 50-87 207-244 (425)
111 PRK07369 dihydroorotase; Provi 27.8 1.6E+02 0.0035 21.7 4.7 39 49-87 207-245 (418)
112 cd09012 Glo_EDI_BRP_like_24 Th 27.2 87 0.0019 18.1 2.8 18 22-39 104-121 (124)
113 PRK04250 dihydroorotase; Provi 27.1 1.7E+02 0.0037 21.4 4.7 42 48-89 176-217 (398)
114 cd07261 Glo_EDI_BRP_like_11 Th 27.0 86 0.0019 17.6 2.7 17 23-39 96-112 (114)
115 PF10114 PocR: Sensory domain 27.0 46 0.001 20.9 1.6 27 21-47 19-45 (173)
116 PF10298 WhiA_N: WhiA N-termin 26.8 88 0.0019 17.5 2.6 34 51-87 4-41 (86)
117 PF02499 DNA_pack_C: Probable 26.8 2.6E+02 0.0057 20.6 7.5 75 4-79 131-214 (354)
118 cd01318 DHOase_IIb Dihydroorot 26.2 1.7E+02 0.0037 21.0 4.5 39 49-87 151-189 (361)
119 KOG2825 Putative arsenite-tran 26.2 81 0.0018 22.5 2.7 26 52-77 125-150 (323)
120 CHL00201 syh histidine-tRNA sy 26.1 2.8E+02 0.006 20.6 5.8 57 21-79 104-166 (430)
121 TIGR00227 ribD_Cterm riboflavi 25.8 2E+02 0.0042 18.8 4.9 36 57-92 129-164 (216)
122 COG2110 Predicted phosphatase 25.1 1.9E+02 0.0042 18.9 4.2 27 49-75 92-120 (179)
123 PRK08417 dihydroorotase; Provi 24.8 2E+02 0.0044 20.8 4.7 39 49-87 175-213 (386)
124 PF14432 DYW_deaminase: DYW fa 24.8 28 0.00061 21.0 0.3 38 49-88 60-98 (116)
125 PRK14830 undecaprenyl pyrophos 24.8 1.3E+02 0.0029 20.8 3.6 55 21-79 22-76 (251)
126 PF05854 MC1: Non-histone chro 24.8 1.1E+02 0.0024 17.9 2.7 20 27-46 6-25 (93)
127 PRK14836 undecaprenyl pyrophos 24.5 89 0.0019 21.7 2.7 50 24-77 17-66 (253)
128 PF11204 DUF2985: Protein of u 24.4 91 0.002 17.8 2.3 21 67-87 40-60 (81)
129 PRK05625 5-amino-6-(5-phosphor 24.3 2.2E+02 0.0047 18.7 4.7 36 57-92 128-163 (217)
130 PF15103 G0-G1_switch_2: G0/G1 24.3 47 0.001 19.8 1.1 18 1-18 17-34 (102)
131 PRK12421 ATP phosphoribosyltra 24.2 2.9E+02 0.0063 20.2 7.2 64 22-87 104-173 (392)
132 COG0084 TatD Mg-dependent DNas 24.1 44 0.00096 23.1 1.2 21 62-82 189-209 (256)
133 PHA03368 DNA packaging termina 24.1 3.8E+02 0.0081 21.9 6.2 76 5-80 505-589 (738)
134 PRK12420 histidyl-tRNA synthet 23.9 3E+02 0.0065 20.2 6.1 62 22-86 102-169 (423)
135 PTZ00253 tryparedoxin peroxida 23.3 2.2E+02 0.0047 18.4 5.0 42 26-69 129-170 (199)
136 PRK10057 rpsV 30S ribosomal su 23.2 17 0.00036 18.0 -0.8 16 70-85 20-35 (44)
137 PF06754 PhnG: Phosphonate met 23.1 2.1E+02 0.0045 18.1 6.8 35 26-64 66-100 (146)
138 TIGR00189 tesB acyl-CoA thioes 23.1 2.5E+02 0.0054 19.0 5.2 39 3-42 228-266 (271)
139 PF07484 Collar: Phage Tail Co 22.7 33 0.00072 18.1 0.3 14 3-18 11-24 (57)
140 PRK05593 rplR 50S ribosomal pr 22.6 1.9E+02 0.0042 17.5 6.1 52 25-77 37-94 (117)
141 PRK10425 DNase TatD; Provision 22.5 57 0.0012 22.4 1.5 20 63-82 188-207 (258)
142 PRK09937 stationary phase/star 22.4 1.5E+02 0.0033 16.3 4.2 18 22-39 12-29 (74)
143 PRK15381 pathogenicity island 22.2 41 0.0009 25.0 0.8 52 24-82 96-154 (408)
144 PRK09822 lipopolysaccharide co 22.2 1.3E+02 0.0028 21.0 3.1 20 58-77 173-192 (269)
145 COG3916 LasI N-acyl-L-homoseri 22.0 2.7E+02 0.0058 18.9 5.6 46 49-97 119-164 (209)
146 PF12991 DUF3875: Domain of un 22.0 1.1E+02 0.0024 16.1 2.1 32 28-59 22-53 (54)
147 PRK13477 bifunctional pantoate 21.9 1.1E+02 0.0025 23.4 3.0 37 28-67 176-212 (512)
148 KOG2882 p-Nitrophenyl phosphat 21.7 1.8E+02 0.0038 21.0 3.7 46 23-81 20-65 (306)
149 cd04678 Nudix_Hydrolase_19 Mem 21.5 1.4E+02 0.003 17.4 2.9 18 23-40 3-20 (129)
150 PHA03372 DNA packaging termina 21.3 4.4E+02 0.0095 21.2 7.3 78 3-80 450-535 (668)
151 TIGR02174 CXXU_selWTH selT/sel 21.2 1.1E+02 0.0024 16.6 2.2 13 2-14 37-49 (72)
152 PF02548 Pantoate_transf: Keto 21.2 2.7E+02 0.0058 19.5 4.5 39 52-90 91-131 (261)
153 COG1703 ArgK Putative periplas 21.0 1.6E+02 0.0034 21.4 3.4 22 56-77 130-151 (323)
154 PF03481 SUA5: Putative GTP-bi 20.8 2E+02 0.0044 17.2 3.6 23 55-77 84-106 (125)
155 PF00925 GTP_cyclohydro2: GTP 20.8 1.9E+02 0.0041 18.5 3.6 35 55-89 125-159 (169)
156 cd04681 Nudix_Hydrolase_22 Mem 20.7 1.4E+02 0.003 17.4 2.8 18 23-40 2-19 (130)
157 PRK09060 dihydroorotase; Valid 20.7 2.4E+02 0.0053 20.8 4.5 39 50-88 208-246 (444)
158 cd06908 M14_AGBL4_like Peptida 20.6 2E+02 0.0042 20.0 3.8 48 9-67 91-138 (261)
159 PF13704 Glyco_tranf_2_4: Glyc 20.5 1.7E+02 0.0037 16.1 3.8 26 54-79 3-28 (97)
160 TIGR00228 ruvC crossover junct 20.4 2.5E+02 0.0054 18.0 7.3 60 16-76 4-64 (156)
161 cd04301 NAT_SF N-Acyltransfera 20.2 1.2E+02 0.0025 14.1 2.8 20 56-75 45-64 (65)
162 PRK10812 putative DNAse; Provi 20.2 71 0.0015 22.0 1.6 19 63-81 190-208 (265)
163 COG0157 NadC Nicotinate-nucleo 20.2 1.7E+02 0.0036 20.8 3.3 34 49-82 165-200 (280)
No 1
>PRK13907 rnhA ribonuclease H; Provisional
Probab=99.85 E-value=5.1e-21 Score=118.23 Aligned_cols=82 Identities=16% Similarity=0.114 Sum_probs=72.9
Q ss_pred eEEEEecceeecCCCcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEechHHHHHHH
Q 042834 7 WFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKEVVDLA 86 (98)
Q Consensus 7 ~~k~n~D~s~~~~~~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l 86 (98)
++++|+|||+..+++.+|+|+|+||..|.+...+ . ....++++||++|+++||+++.++++.+|+|+|||+.|++.+
T Consensus 1 ~~~iy~DGa~~~~~g~~G~G~vi~~~~~~~~~~~--~-~~~~tn~~AE~~All~aL~~a~~~g~~~v~i~sDS~~vi~~~ 77 (128)
T PRK13907 1 MIEVYIDGASKGNPGPSGAGVFIKGVQPAVQLSL--P-LGTMSNHEAEYHALLAALKYCTEHNYNIVSFRTDSQLVERAV 77 (128)
T ss_pred CEEEEEeeCCCCCCCccEEEEEEEECCeeEEEEe--c-ccccCCcHHHHHHHHHHHHHHHhCCCCEEEEEechHHHHHHH
Confidence 5899999999999999999999999998776443 2 234689999999999999999999999999999999999999
Q ss_pred hcCCC
Q 042834 87 RNRNC 91 (98)
Q Consensus 87 ~~~~~ 91 (98)
++...
T Consensus 78 ~~~~~ 82 (128)
T PRK13907 78 EKEYA 82 (128)
T ss_pred hHHHh
Confidence 98553
No 2
>PRK07708 hypothetical protein; Validated
Probab=99.77 E-value=5.3e-18 Score=113.44 Aligned_cols=92 Identities=17% Similarity=0.099 Sum_probs=77.8
Q ss_pred CCCceEEEEecceeecCCCcceEEEEEeCCCccEE--EeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCcc--EEEEec
Q 042834 3 PPNGWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAV--AATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLP--IIVESD 78 (98)
Q Consensus 3 P~~g~~k~n~D~s~~~~~~~~g~G~vird~~G~~i--~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~--v~~esD 78 (98)
+.+..+++|+|||+..+++.+|+|+|++++.|... ......+....++++||+.|++.||++|.++|+++ |.|++|
T Consensus 69 ~ep~~~~vY~DGs~~~n~g~aG~GvVI~~~~g~~~~~~~~~~~l~~~~TNN~AEy~Ali~aL~~A~e~g~~~~~V~I~~D 148 (219)
T PRK07708 69 EEPHEILVYFDGGFDKETKLAGLGIVIYYKQGNKRYRIRRNAYIEGIYDNNEAEYAALYYAMQELEELGVKHEPVTFRGD 148 (219)
T ss_pred cCCCcEEEEEeeccCCCCCCcEEEEEEEECCCCEEEEEEeeccccccccCcHHHHHHHHHHHHHHHHcCCCcceEEEEec
Confidence 34567999999999999999999999999877643 33344566667999999999999999999999976 899999
Q ss_pred hHHHHHHHhcCCCCCc
Q 042834 79 SKEVVDLARNRNCLSS 94 (98)
Q Consensus 79 s~~vv~~l~~~~~~~s 94 (98)
|+.|++++++....++
T Consensus 149 SqlVi~qi~g~wk~~~ 164 (219)
T PRK07708 149 SQVVLNQLAGEWPCYD 164 (219)
T ss_pred cHHHHHHhCCCceeCC
Confidence 9999999998765544
No 3
>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]
Probab=99.72 E-value=8.1e-17 Score=102.22 Aligned_cols=79 Identities=18% Similarity=0.136 Sum_probs=69.2
Q ss_pred ceEEEEecceeecCCCcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEechHHHHHH
Q 042834 6 GWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKEVVDL 85 (98)
Q Consensus 6 g~~k~n~D~s~~~~~~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~ 85 (98)
..+.+++|||+..+++.+|+|+|++...+.. ..+.... ..+++.+|++|+++||+++++.+.+.|.++|||+.|++.
T Consensus 2 ~~v~if~DGa~~gNpG~gG~g~vl~~~~~~~--~~s~~~~-~tTNNraEl~A~i~AL~~l~~~~~~~v~l~tDS~yv~~~ 78 (154)
T COG0328 2 KKVEIFTDGACLGNPGPGGWGAVLRYGDGEK--ELSGGEG-RTTNNRAELRALIEALEALKELGACEVTLYTDSKYVVEG 78 (154)
T ss_pred CceEEEecCccCCCCCCceEEEEEEcCCceE--EEeeeee-cccChHHHHHHHHHHHHHHHhcCCceEEEEecHHHHHHH
Confidence 3578999999999999999999999777666 2222333 568999999999999999999999999999999999999
Q ss_pred Hh
Q 042834 86 AR 87 (98)
Q Consensus 86 l~ 87 (98)
|+
T Consensus 79 i~ 80 (154)
T COG0328 79 IT 80 (154)
T ss_pred HH
Confidence 98
No 4
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=99.72 E-value=7e-17 Score=114.96 Aligned_cols=86 Identities=21% Similarity=0.231 Sum_probs=74.8
Q ss_pred eEEEEecceeecCCCcceEEEEEeCCCcc-EEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEechHHHHHH
Q 042834 7 WFKVNVDAAIKLSDQTAGLGVIIRDSRGK-AVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKEVVDL 85 (98)
Q Consensus 7 ~~k~n~D~s~~~~~~~~g~G~vird~~G~-~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~ 85 (98)
.+++|+|||+..+++.+|+|+++|+++|. ++...+..+. ..++++||+.||+.||+++.+++.++|.|++||+.|++.
T Consensus 2 ~~~i~~DGa~~~n~g~aG~G~vi~~~~~~~~~~~~~~~~~-~~tnn~AE~~All~gL~~a~~~g~~~v~i~~DS~lvi~~ 80 (372)
T PRK07238 2 KVVVEADGGSRGNPGPAGYGAVVWDADRGEVLAERAEAIG-RATNNVAEYRGLIAGLEAAAELGATEVEVRMDSKLVVEQ 80 (372)
T ss_pred eEEEEecCCCCCCCCceEEEEEEEeCCCCcEEEEeecccC-CCCchHHHHHHHHHHHHHHHhCCCCeEEEEeCcHHHHHH
Confidence 47899999999999999999999999764 5555555555 457789999999999999999999999999999999999
Q ss_pred HhcCCCCC
Q 042834 86 ARNRNCLS 93 (98)
Q Consensus 86 l~~~~~~~ 93 (98)
++++...+
T Consensus 81 i~~~~~~~ 88 (372)
T PRK07238 81 MSGRWKVK 88 (372)
T ss_pred hCCCCccC
Confidence 99866433
No 5
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.
Probab=99.68 E-value=4.7e-16 Score=93.26 Aligned_cols=82 Identities=17% Similarity=0.120 Sum_probs=74.1
Q ss_pred EEEecceeecCCCcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEechHHHHHHHhc
Q 042834 9 KVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKEVVDLARN 88 (98)
Q Consensus 9 k~n~D~s~~~~~~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~~ 88 (98)
+|++|||+..+.+.+|+|+++++..+.+........ ...+++++|++|+++||+++...+.+++.|++||+.+++.+++
T Consensus 1 ~~~~Dgs~~~~~~~~g~g~v~~~~~~~~~~~~~~~~-~~~s~~~aEl~al~~al~~~~~~~~~~i~i~~Ds~~~~~~~~~ 79 (130)
T cd06222 1 VIYTDGSCRGNPGPAGAGVVLRDPGGEVLLSGGLLG-GNTTNNRAELLALIEALELALELGGKKVNIYTDSQYVINALTG 79 (130)
T ss_pred CEEecccCCCCCCceEEEEEEEeCCCeEEEeccccC-CCCcHHHHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHhhc
Confidence 589999999888999999999999998887766544 5679999999999999999999999999999999999999998
Q ss_pred CCC
Q 042834 89 RNC 91 (98)
Q Consensus 89 ~~~ 91 (98)
...
T Consensus 80 ~~~ 82 (130)
T cd06222 80 WYE 82 (130)
T ss_pred ccc
Confidence 653
No 6
>PRK08719 ribonuclease H; Reviewed
Probab=99.48 E-value=4e-13 Score=85.10 Aligned_cols=78 Identities=22% Similarity=0.276 Sum_probs=64.8
Q ss_pred ceEEEEecceeecCCC---cceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEechHHH
Q 042834 6 GWFKVNVDAAIKLSDQ---TAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKEV 82 (98)
Q Consensus 6 g~~k~n~D~s~~~~~~---~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~v 82 (98)
..+++++|||+..+++ .+|+|+++.+..|..+...+..+....+++.||+.|++.||+.+.+. ..|.|||+.+
T Consensus 3 ~~~~iYtDGs~~~n~~~~~~~G~G~vv~~~~~~~~~~~~~~~~~~~Tnn~aEl~A~~~aL~~~~~~----~~i~tDS~yv 78 (147)
T PRK08719 3 ASYSIYIDGAAPNNQHGCVRGGIGLVVYDEAGEIVDEQSITVNRYTDNAELELLALIEALEYARDG----DVIYSDSDYC 78 (147)
T ss_pred ceEEEEEecccCCCCCCCCCcEEEEEEEeCCCCeeEEEEecCCCCccHHHHHHHHHHHHHHHcCCC----CEEEechHHH
Confidence 4588999999987765 68999999998887665444445555699999999999999998764 3799999999
Q ss_pred HHHHh
Q 042834 83 VDLAR 87 (98)
Q Consensus 83 v~~l~ 87 (98)
++.++
T Consensus 79 i~~i~ 83 (147)
T PRK08719 79 VRGFN 83 (147)
T ss_pred HHHHH
Confidence 99995
No 7
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B.
Probab=99.43 E-value=3.3e-13 Score=77.35 Aligned_cols=47 Identities=38% Similarity=0.292 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCccEEEEechHHHHHHHhcCCCCCccc
Q 042834 50 VAYMEAAAVNLGIQVAQNAKFLPIIVESDSKEVVDLARNRNCLSSLL 96 (98)
Q Consensus 50 ~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~~~~~~~s~~ 96 (98)
|++||++|+++||++|+++|+++|+|||||+.+|++++++...++++
T Consensus 1 ~~~aE~~al~~al~~a~~~g~~~i~v~sDs~~vv~~i~~~~~~~~~~ 47 (87)
T PF13456_consen 1 PLEAEALALLEALQLAWELGIRKIIVESDSQLVVDAINGRSSSRSEL 47 (87)
T ss_dssp HHHHHHHHHHHHHHHHHCCT-SCEEEEES-HHHHHHHTTSS---SCC
T ss_pred CcHHHHHHHHHHHHHHHHCCCCEEEEEecCccccccccccccccccc
Confidence 68999999999999999999999999999999999999997776654
No 8
>PRK00203 rnhA ribonuclease H; Reviewed
Probab=99.42 E-value=1.5e-12 Score=82.61 Aligned_cols=77 Identities=16% Similarity=0.095 Sum_probs=62.5
Q ss_pred eEEEEecceeecCCCcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEechHHHHHHH
Q 042834 7 WFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKEVVDLA 86 (98)
Q Consensus 7 ~~k~n~D~s~~~~~~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l 86 (98)
.+++++|||+..+++.+|+|+|++..++..... .... ..++..||++|+..||+.+.+. ..|.|.|||+.+++.|
T Consensus 3 ~v~iytDGs~~~n~~~~g~g~v~~~~~~~~~~~--~~~~-~~TN~~aEL~Ai~~AL~~~~~~--~~v~I~tDS~yvi~~i 77 (150)
T PRK00203 3 QVEIYTDGACLGNPGPGGWGAILRYKGHEKELS--GGEA-LTTNNRMELMAAIEALEALKEP--CEVTLYTDSQYVRQGI 77 (150)
T ss_pred eEEEEEEecccCCCCceEEEEEEEECCeeEEEe--cCCC-CCcHHHHHHHHHHHHHHHcCCC--CeEEEEECHHHHHHHH
Confidence 488999999999999999999998755443222 2233 4588999999999999988653 5799999999999998
Q ss_pred hc
Q 042834 87 RN 88 (98)
Q Consensus 87 ~~ 88 (98)
+.
T Consensus 78 ~~ 79 (150)
T PRK00203 78 TE 79 (150)
T ss_pred HH
Confidence 85
No 9
>PRK06548 ribonuclease H; Provisional
Probab=99.41 E-value=2.9e-12 Score=82.23 Aligned_cols=75 Identities=16% Similarity=0.043 Sum_probs=60.3
Q ss_pred eEEEEecceeecCCCcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEechHHHHHHH
Q 042834 7 WFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKEVVDLA 86 (98)
Q Consensus 7 ~~k~n~D~s~~~~~~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l 86 (98)
.+.+++||++.++++.+|+|+++.+. + .. +.. ....+++.||++|+++||+.+. ....+|.|.|||+.+++.+
T Consensus 5 ~~~IytDGa~~gnpg~~G~g~~~~~~-~-~~---~g~-~~~~TNnraEl~Aii~aL~~~~-~~~~~v~I~TDS~yvi~~i 77 (161)
T PRK06548 5 EIIAATDGSSLANPGPSGWAWYVDEN-T-WD---SGG-WDIATNNIAELTAVRELLIATR-HTDRPILILSDSKYVINSL 77 (161)
T ss_pred EEEEEEeeccCCCCCceEEEEEEeCC-c-EE---ccC-CCCCCHHHHHHHHHHHHHHhhh-cCCceEEEEeChHHHHHHH
Confidence 48999999999999999999999853 2 21 111 2346899999999999998554 4556899999999999999
Q ss_pred hc
Q 042834 87 RN 88 (98)
Q Consensus 87 ~~ 88 (98)
+.
T Consensus 78 ~~ 79 (161)
T PRK06548 78 TK 79 (161)
T ss_pred HH
Confidence 83
No 10
>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site. This domain is a part of a large family of homologous RNase H enzymes of which the RNase HI protein from Escherichia coli is the best characterised []. Secondary structure predictions for the enzymes from E. coli, yeast, human liver and diverse retroviruses (such as Rous sarcoma virus and the Foamy viruses) supported, in every case, the five beta-strands (1 to 5) and four or five alpha-helices (A, B/C, D, E) that have been identified by crystallography in the RNase H domain of Human immunodeficiency virus 1 (HIV-1) reverse transcriptase and in E. coli RNase H []. Reverse transcriptase (RT) is a modular enzyme carrying polymerase and ribonuclease H (RNase H) activities in separable domains. Reverse transcriptase (RT) converts the single-stranded RNA genome of a retrovirus into a double-stranded DNA copy for integration into the host genome. This process requires ribonuclease H as well as RNA- and DNA-directed DNA polymerase activities. Retroviral RNase H is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. Bacterial RNase H 3.1.26.4 from EC catalyses endonucleolytic cleavage to 5'-phosphomonoester acting on RNA-DNA hybrids. The 3D structure of the RNase H domain from diverse bacteria and retroviruses has been solved [, , ]. All have four beta strands and four to five alpha helices. The E. coli RNase H1 protein binds a single Mg2+ ion cofactor in the active site of the enzyme. The divalent cation is bound by the carboxyl groups of four acidic residues, Asp-10, Glu-48, Asp-70, and Asp-134 []. The first three acidic residues are highly conserved in all bacterial and retroviral RNase H sequences. ; GO: 0003676 nucleic acid binding, 0004523 ribonuclease H activity; PDB: 3LP3_B 2KW4_A 3P1G_A 1RIL_A 2RPI_A 4EQJ_G 4EP2_B 3OTY_P 3U3G_D 2ZQB_D ....
Probab=99.36 E-value=1.2e-11 Score=75.92 Aligned_cols=74 Identities=12% Similarity=0.155 Sum_probs=58.8
Q ss_pred ceEEEEecceeecCCCcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEechHHHHHH
Q 042834 6 GWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKEVVDL 85 (98)
Q Consensus 6 g~~k~n~D~s~~~~~~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~ 85 (98)
.-+.+++|||+..+++.+|+|+|+.+. . ..+..++ ..++..||++|+.+||+ +. .. ++|.|.|||+.+++.
T Consensus 2 ~~~~iytDgS~~~~~~~~~~g~v~~~~--~---~~~~~~~-~~s~~~aEl~Ai~~AL~-~~-~~-~~v~I~tDS~~v~~~ 72 (132)
T PF00075_consen 2 KAIIIYTDGSCRPNPGKGGAGYVVWGG--R---NFSFRLG-GQSNNRAELQAIIEALK-AL-EH-RKVTIYTDSQYVLNA 72 (132)
T ss_dssp TSEEEEEEEEECTTTTEEEEEEEEETT--E---EEEEEEE-SECHHHHHHHHHHHHHH-TH-ST-SEEEEEES-HHHHHH
T ss_pred CcEEEEEeCCccCCCCceEEEEEEECC--e---EEEeccc-ccchhhhheehHHHHHH-Hh-hc-ccccccccHHHHHHH
Confidence 357899999999999999999977443 2 2233344 56899999999999999 55 22 999999999999998
Q ss_pred Hhc
Q 042834 86 ARN 88 (98)
Q Consensus 86 l~~ 88 (98)
+++
T Consensus 73 l~~ 75 (132)
T PF00075_consen 73 LNK 75 (132)
T ss_dssp HHT
T ss_pred HHH
Confidence 887
No 11
>KOG3752 consensus Ribonuclease H [Replication, recombination and repair]
Probab=98.93 E-value=6.7e-09 Score=73.63 Aligned_cols=80 Identities=16% Similarity=0.138 Sum_probs=63.3
Q ss_pred ceEEEEecceeecCC---CcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEechHHH
Q 042834 6 GWFKVNVDAAIKLSD---QTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKEV 82 (98)
Q Consensus 6 g~~k~n~D~s~~~~~---~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~v 82 (98)
+...+++||++..+. ..+|+|+.+=+ |.-........++..+++.||+.|+.+||+-|++....+|.|-|||..+
T Consensus 211 ~~~vvytDGS~~~ng~~~~~AGyGvywg~--~~e~N~s~pv~~g~qtNnrAEl~Av~~ALkka~~~~~~kv~I~TDS~~~ 288 (371)
T KOG3752|consen 211 EIQVVYTDGSSSGNGRKSSRAGYGVYWGP--GHELNVSGPLAGGRQTNNRAELIAAIEALKKARSKNINKVVIRTDSEYF 288 (371)
T ss_pred cceEEEecCccccCCCCCCcceeEEeeCC--CCcccccccCCCCcccccHHHHHHHHHHHHHHHhcCCCcEEEEechHHH
Confidence 447799999999753 34777777754 3333333322336779999999999999999999999999999999999
Q ss_pred HHHHh
Q 042834 83 VDLAR 87 (98)
Q Consensus 83 v~~l~ 87 (98)
++.|+
T Consensus 289 i~~l~ 293 (371)
T KOG3752|consen 289 INSLT 293 (371)
T ss_pred HHHHH
Confidence 99987
No 12
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.015 Score=42.23 Aligned_cols=69 Identities=19% Similarity=0.142 Sum_probs=51.1
Q ss_pred CcceEEEEEeCC-CccEEEeeeeeec--ccCCHHHHHHHHHHHHHHHHHHCCCccEEEEechHHHHHHHhcC
Q 042834 21 QTAGLGVIIRDS-RGKAVAATVQKVS--FRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKEVVDLARNR 89 (98)
Q Consensus 21 ~~~g~G~vird~-~G~~i~~~~~~~~--~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~~~ 89 (98)
..+|.|+.+.|+ +............ ...+++.||++|+..+|..+.++++.++.+.+|...+...+..+
T Consensus 17 ~~~g~~vai~d~~d~~~~f~~k~~~~~~~~~~~~~ae~~al~~~l~ea~~~~~~~~~~~~d~~~~~~~v~~~ 88 (384)
T KOG1812|consen 17 LLAGFGVAICDEHDDDLLFQMKASDHDSDSITPLEAELMALKRGLTEALELGLNHIVIYCDDELIYESVAGR 88 (384)
T ss_pred hcccCceeeeccccHHHHHHhhcCcccccccchhhHHHHHHhhccHHHHhhccccceEecccHHHHHHHhhh
Confidence 468899999886 4443332222222 22579999999999999999999999999999977776655544
No 13
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=94.89 E-value=0.24 Score=31.04 Aligned_cols=69 Identities=17% Similarity=0.220 Sum_probs=53.3
Q ss_pred CcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEec----------hHHHHHHHhcCC
Q 042834 21 QTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESD----------SKEVVDLARNRN 90 (98)
Q Consensus 21 ~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esD----------s~~vv~~l~~~~ 90 (98)
...-+|.++|..+|++..+..--......-..||-.|+..++.- -...+..|.+.+| |.+++.-+....
T Consensus 24 S~F~VGAa~~t~~G~i~tG~NiEnasy~~t~CAErsAI~~ais~-G~~~~~~v~v~~~~~~~~sPCG~CRQ~i~Ef~~~d 102 (134)
T COG0295 24 SKFKVGAALRTKDGRIYTGANVENASYGLTVCAERSAIFKAISE-GKRKFDAVVVVADTGKPVSPCGACRQVLAEFCGDD 102 (134)
T ss_pred cCCcEEEEEEeCCCCEEEEEeeecccccchhhHHHHHHHHHHHc-CCCcEEEEEEEcCCCCCcCCcHHHHHHHHHhcCCC
Confidence 45678999999999988876655555566789999999999887 5666788899888 677776666544
No 14
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=93.88 E-value=0.24 Score=31.52 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=40.7
Q ss_pred CcceEEEEEeCCCccEEEeeeeeeccc-CCHHHHHHHHHHHHHHHHHHCCCccEEEEe
Q 042834 21 QTAGLGVIIRDSRGKAVAATVQKVSFR-GDVAYMEAAAVNLGIQVAQNAKFLPIIVES 77 (98)
Q Consensus 21 ~~~g~G~vird~~G~~i~~~~~~~~~~-~~~~~aE~~Al~~aL~~a~~~g~~~v~~es 77 (98)
+...+|.||-+.+|.++.......... .-..+||..||+.|-+......+....+++
T Consensus 26 ge~PvGaviV~~~~~ii~~~~N~~~~~~dptaHAEi~air~a~~~~~~~~l~~~tlyv 83 (152)
T COG0590 26 GEVPVGAVIVDADGEIIARGHNRREEDNDPTAHAEILAIRAAAETLGNYRLKDCTLYV 83 (152)
T ss_pred CCCCEEEEEEcCCCCEEEEecCccccCCCccccHHHHHHHHHHHhhCCCCcCCcEEEE
Confidence 456789999999998888665543333 233599999999999888665555555543
No 15
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=92.61 E-value=0.67 Score=27.56 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=32.4
Q ss_pred CcceEEEEEeCCCccEEEeeeeee-cccCCHHHHHHHHHHHHHHH
Q 042834 21 QTAGLGVIIRDSRGKAVAATVQKV-SFRGDVAYMEAAAVNLGIQV 64 (98)
Q Consensus 21 ~~~g~G~vird~~G~~i~~~~~~~-~~~~~~~~aE~~Al~~aL~~ 64 (98)
+...+|.+|.|.+|+++..+.... .......+||..|+..+.+.
T Consensus 15 ~~~~vgaviv~~~~~ii~~g~n~~~~~~~~~~HAE~~ai~~~~~~ 59 (109)
T cd01285 15 GEVPFGAVIVDDDGKVIARGHNRVEQDGDPTAHAEIVAIRNAARR 59 (109)
T ss_pred CCCcEEEEEEeCCCEEEEEEeCCCCCCCCCcccHHHHHHHHHHHH
Confidence 456789999998899887655443 22345689999999887664
No 16
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=91.89 E-value=0.8 Score=27.78 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=31.4
Q ss_pred CcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHH
Q 042834 21 QTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQV 64 (98)
Q Consensus 21 ~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~ 64 (98)
+..-+|.||-+.+|+++........ ...+||..||..+.+.
T Consensus 17 ~~~pvGaviv~~~g~iv~~g~n~~~---~~~HAE~~ai~~a~~~ 57 (115)
T cd01284 17 PNPPVGCVIVDDDGEIVGEGYHRKA---GGPHAEVNALASAGEK 57 (115)
T ss_pred CCCCEEEEEEeCCCeEEEEecCCCC---CcccHHHHHHHHHhhc
Confidence 4567888998888998887665433 5689999999888763
No 17
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=91.83 E-value=0.5 Score=29.12 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=40.0
Q ss_pred CcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEec
Q 042834 21 QTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESD 78 (98)
Q Consensus 21 ~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esD 78 (98)
....+|.++++.+|+++.+...-.........||..|+..+...- +..+..|.+-.+
T Consensus 19 S~~~vgAa~~~~~G~i~~G~n~e~~~~~~s~~AE~~Ai~~a~~~g-~~~i~~i~vv~~ 75 (127)
T TIGR01354 19 SNFKVGAALLTKDGRIFTGVNVENASYPLTICAERSAIGKAISAG-YRKFVAIAVADS 75 (127)
T ss_pred CCCeEEEEEEeCCCCEEEEEeecccCCCCCcCHHHHHHHHHHHcC-CCCeEEEEEEeC
Confidence 356789999999999988665444334456799999998888652 235667777543
No 18
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate.
Probab=91.46 E-value=1.3 Score=25.67 Aligned_cols=44 Identities=11% Similarity=0.026 Sum_probs=29.2
Q ss_pred CCcceEEEEEeCC-CccEEEeeeee-ecccCCHHHHHHHHHHHHHH
Q 042834 20 DQTAGLGVIIRDS-RGKAVAATVQK-VSFRGDVAYMEAAAVNLGIQ 63 (98)
Q Consensus 20 ~~~~g~G~vird~-~G~~i~~~~~~-~~~~~~~~~aE~~Al~~aL~ 63 (98)
.+...+|.++.+. +|..+..+... ........+||..|++.+..
T Consensus 15 ~~~~pVGaviv~~~~g~ii~~g~n~~~~~~~~~~HAE~~ai~~a~~ 60 (96)
T cd00786 15 ESNFQVGACLVNKKDGGKVGRGCNIENAAYSMCNHAERTALFNAGS 60 (96)
T ss_pred CCCCCEEEEEEEeCCCCeEeeeEeccCCCCCCeeCHHHHHHHHHHH
Confidence 3567788888876 57776654432 22233558999999987754
No 19
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes.
Probab=91.23 E-value=0.77 Score=27.32 Aligned_cols=45 Identities=11% Similarity=0.103 Sum_probs=34.1
Q ss_pred CCcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHH
Q 042834 20 DQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQV 64 (98)
Q Consensus 20 ~~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~ 64 (98)
.+...+|.++++.+|.++.+............+||..|+..+...
T Consensus 15 ~~~~~vga~i~~~~g~i~~G~n~e~~~~~~~~hAE~~ai~~~~~~ 59 (112)
T cd01283 15 YSNFTVGAALLTKDGRIFTGVNVENASYGLTLCAERTAIGKAVSE 59 (112)
T ss_pred CCCCeEEEEEEECCCCEEEeEEeecCCCCCCcCHHHHHHHHHHHc
Confidence 356788999998889988766655544556789999999887753
No 20
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=87.72 E-value=1.1 Score=25.86 Aligned_cols=46 Identities=17% Similarity=0.154 Sum_probs=30.4
Q ss_pred CCCcceEEEEEeCCCccEEEeeeeeec-ccCCHHHHHHHHHHHHHHH
Q 042834 19 SDQTAGLGVIIRDSRGKAVAATVQKVS-FRGDVAYMEAAAVNLGIQV 64 (98)
Q Consensus 19 ~~~~~g~G~vird~~G~~i~~~~~~~~-~~~~~~~aE~~Al~~aL~~ 64 (98)
..+...+|.+|.+++|..+..+..... ......+||..|+..+-+.
T Consensus 20 ~~~~~~vgaviv~~~~~~i~~g~n~~~~~~~~~~HAE~~Ai~~~~~~ 66 (102)
T PF00383_consen 20 PCGNFPVGAVIVDPDGKIIATGYNGEPPGKNPTIHAEMNAIRKAARN 66 (102)
T ss_dssp TTTSSSEEEEEEETTTEEEEEEESBHHSTTGGTB-HHHHHHHHHHHT
T ss_pred ccCCCCEEEEEEeccCccEEEEeeeeeeeccccccchhhhhhhhhhh
Confidence 346778999999977666665544332 2223469999998877765
No 21
>TIGR02571 ComEB ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.
Probab=86.83 E-value=3.3 Score=26.34 Aligned_cols=67 Identities=13% Similarity=0.048 Sum_probs=40.7
Q ss_pred cceEEEEEeCCCccEEEeeeeeeccc----------------CCHHHHHHHHHHHHH----------------------H
Q 042834 22 TAGLGVIIRDSRGKAVAATVQKVSFR----------------GDVAYMEAAAVNLGI----------------------Q 63 (98)
Q Consensus 22 ~~g~G~vird~~G~~i~~~~~~~~~~----------------~~~~~aE~~Al~~aL----------------------~ 63 (98)
...+|.||.. +|++|..+....+.- ....+||..||+.+. .
T Consensus 24 ~~~VGAVIV~-d~~IIs~GyN~~~~g~~~~~~~~~~~~~~~~~~~~HAE~nAI~~a~~~~~~l~g~tlYvT~ePC~~Ca~ 102 (151)
T TIGR02571 24 RLSVGATIVR-DKRIIAGGYNGSVAGGVHCIDEGCYVVDGHCVRTIHAEMNALLQCAKFGVSTEGAEIYVTHFPCLQCTK 102 (151)
T ss_pred CCCEEEEEEE-CCEEEEEEECCCCCCCCccccccccccccccCCccCHHHHHHHHHHhcCCCcCCcEEEEeCCCcHHHHH
Confidence 4567777774 578887665543221 123699999998763 3
Q ss_pred HHHHCCCccEEEEec---hHHHHHHHhcC
Q 042834 64 VAQNAKFLPIIVESD---SKEVVDLARNR 89 (98)
Q Consensus 64 ~a~~~g~~~v~~esD---s~~vv~~l~~~ 89 (98)
.+...|+.+|++-.+ ...-.+.|...
T Consensus 103 ai~~agI~~Vvy~~~~~~~~~~~~~l~~~ 131 (151)
T TIGR02571 103 SIIQAGIKKIYYAQDYHNHPYAIELFEQA 131 (151)
T ss_pred HHHHhCCCEEEEccCCCCcHHHHHHHHHC
Confidence 445668888887532 22344555443
No 22
>PHA02588 cd deoxycytidylate deaminase; Provisional
Probab=84.03 E-value=9.1 Score=24.74 Aligned_cols=29 Identities=7% Similarity=0.035 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHH----------------------HHHHHCCCccEEEEec
Q 042834 50 VAYMEAAAVNLGI----------------------QVAQNAKFLPIIVESD 78 (98)
Q Consensus 50 ~~~aE~~Al~~aL----------------------~~a~~~g~~~v~~esD 78 (98)
..+||..||+.+- ..+...|+.+|++-.+
T Consensus 81 ~~HAE~nAi~~a~~~~~~~~g~tLYvTlePC~~Ca~aI~~~gI~rVvy~~~ 131 (168)
T PHA02588 81 EIHAELNAILFAARNGISIEGATMYVTASPCPDCAKAIAQSGIKKLVYCEK 131 (168)
T ss_pred CccHHHHHHHHHhhcCCCCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEeec
Confidence 5699999998873 3445668888887654
No 23
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=83.58 E-value=4.4 Score=26.35 Aligned_cols=41 Identities=12% Similarity=0.134 Sum_probs=27.7
Q ss_pred cceEEEEEeCCCccEEEeeeeeec-ccCCHHHHHHHHHHHHHH
Q 042834 22 TAGLGVIIRDSRGKAVAATVQKVS-FRGDVAYMEAAAVNLGIQ 63 (98)
Q Consensus 22 ~~g~G~vird~~G~~i~~~~~~~~-~~~~~~~aE~~Al~~aL~ 63 (98)
..-+|.||-+ +|++|..+..... ......+||..|++.+.+
T Consensus 32 ~~pvGAVIV~-~g~IIa~g~N~~~~~~d~~~HAEi~Ai~~a~~ 73 (172)
T PRK10860 32 EVPVGAVLVH-NNRVIGEGWNRPIGRHDPTAHAEIMALRQGGL 73 (172)
T ss_pred CCCEEEEEEe-CCEEEEEeeCCCCCCCCCccCHHHHHHHHHHH
Confidence 4567888886 5888876554422 222346999999998865
No 24
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=82.03 E-value=4.4 Score=28.98 Aligned_cols=66 Identities=24% Similarity=0.298 Sum_probs=30.9
Q ss_pred CCcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHC---CCccEEEEechHHHHHHHhcC
Q 042834 20 DQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNA---KFLPIIVESDSKEVVDLARNR 89 (98)
Q Consensus 20 ~~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~---g~~~v~~esDs~~vv~~l~~~ 89 (98)
.+..-+|+-||-.+|+-+..-...+. +...+ +.-+..++.-++.+ .-.+|.+-|||+.|++.+++.
T Consensus 165 ~g~~~IGVHVRhGngeD~~~h~~~~~---D~e~~-L~~V~~ai~~ak~~~~~k~~~IFLATDSaeVid~fr~~ 233 (321)
T PF05830_consen 165 AGYSVIGVHVRHGNGEDIMDHAPYWA---DEERA-LRQVCTAIDKAKALAPPKPVRIFLATDSAEVIDQFRKK 233 (321)
T ss_dssp TTSEEEEEEE---------------H---HHHHH-HHHHHHHHHHHHTS--SS-EEEEEEES-HHHHHHHHHH
T ss_pred CCCceEEEEEeccCCcchhccCcccc---CchHH-HHHHHHHHHHHHhccCCCCeeEEEecCcHHHHHHHHHH
Confidence 35667999999877765444332221 21111 22233455555443 346799999999999999864
No 25
>PRK12411 cytidine deaminase; Provisional
Probab=80.63 E-value=6.5 Score=24.45 Aligned_cols=57 Identities=16% Similarity=0.190 Sum_probs=39.8
Q ss_pred CcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEec
Q 042834 21 QTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESD 78 (98)
Q Consensus 21 ~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esD 78 (98)
....+|..++..+|++..+..--.....-..-||..|+..++.. -+..+..|.+-++
T Consensus 22 S~~~VgAa~~t~~G~i~~G~nvEn~s~~~s~CAE~~Ai~~av~~-g~~~i~~i~v~~~ 78 (132)
T PRK12411 22 SKFQVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSE-GDKEFVAIAIVAD 78 (132)
T ss_pred cCCceEEEEEeCCCCEEEEEEeecCCCCcCcCHHHHHHHHHHHC-CCCceEEEEEEeC
Confidence 45678999999999998876643333334578999998887643 2335677777665
No 26
>PRK05578 cytidine deaminase; Validated
Probab=78.34 E-value=9 Score=23.78 Aligned_cols=65 Identities=12% Similarity=0.145 Sum_probs=43.6
Q ss_pred cceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEec----------hHHHHHHHh
Q 042834 22 TAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESD----------SKEVVDLAR 87 (98)
Q Consensus 22 ~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esD----------s~~vv~~l~ 87 (98)
...+|..++..+|++..+..--.....-...||..|+..++..- +..+..+.+-+| |.+++..+.
T Consensus 23 ~f~Vgaa~~~~~G~i~~G~nvEna~~~~~~CAE~~Ai~~av~~G-~~~i~~i~vv~~~~~~~sPCG~CRQ~l~e~~ 97 (131)
T PRK05578 23 KFPVGAALLTDDGRIYTGCNIENASYGLTNCAERTAIFKAISEG-GGRLVAIACVGETGEPLSPCGRCRQVLAEFG 97 (131)
T ss_pred CCceEEEEEeCCCCEEEEEEeeCccccCCcCHHHHHHHHHHHcC-CCceEEEEEEecCCCccCccHHHHHHHHHhC
Confidence 45789999999999988766432223345789999998887432 335667777544 556665554
No 27
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.
Probab=76.75 E-value=10 Score=23.31 Aligned_cols=41 Identities=10% Similarity=0.082 Sum_probs=26.9
Q ss_pred cceEEEEEeCCCccEEEeeeeeec----------------------ccCCHHHHHHHHHHHHHH
Q 042834 22 TAGLGVIIRDSRGKAVAATVQKVS----------------------FRGDVAYMEAAAVNLGIQ 63 (98)
Q Consensus 22 ~~g~G~vird~~G~~i~~~~~~~~----------------------~~~~~~~aE~~Al~~aL~ 63 (98)
...+|.||.+. |.+|..+..... ......+||..||+.+-+
T Consensus 19 ~~~VGAViv~~-~~iI~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~a~~ 81 (131)
T cd01286 19 RRQVGAVIVKD-KRIISTGYNGSPSGLPHCAEVGCERDDLPSGEDQKCCRTVHAEQNAILQAAR 81 (131)
T ss_pred CCCEEEEEEEC-CEEEEEeeCCCCCCCCCcccccccccccccccccccCCCCCHHHHHHHHHhH
Confidence 45678888874 677765544332 112457999999988754
No 28
>PRK06848 hypothetical protein; Validated
Probab=76.31 E-value=8.1 Score=24.23 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=37.3
Q ss_pred CcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEe
Q 042834 21 QTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVES 77 (98)
Q Consensus 21 ~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~es 77 (98)
....+|..++..+|++..+..--........-||-.|+..++.. -+..+..|.+-+
T Consensus 25 s~f~VgAa~l~~~G~i~~G~NvEnas~~~tiCAEr~Ai~~av~~-g~~~i~~i~~v~ 80 (139)
T PRK06848 25 DWHHVGAALRTKTGRIYAAVHLEAYVGRITVCAEAIAIGKAISE-GDHEIDTIVAVR 80 (139)
T ss_pred CCCcEEEEEEeCCCCEEEEEEeecCCCCcccCHHHHHHHHHHHc-CCCceEEEEEEe
Confidence 35789999999999998776543323334579999999888754 122344554433
No 29
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model.
Probab=73.49 E-value=4.7 Score=28.83 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=27.1
Q ss_pred eEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHH
Q 042834 24 GLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQ 63 (98)
Q Consensus 24 g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~ 63 (98)
-+|+||.+ +|+++..+..... ...+||..|++.|.+
T Consensus 20 ~vGaviv~-~~~ii~~g~n~~~---~~~HAE~~ai~~a~~ 55 (344)
T TIGR00326 20 LVGCVIVK-NGEIVGEGAHQKA---GEPHAEVHALRQAGE 55 (344)
T ss_pred CEEEEEEe-CCEEEEEeeCCCC---CCCCHHHHHHHHhcc
Confidence 57888887 7998887665432 346999999998754
No 30
>KOG1018 consensus Cytosine deaminase FCY1 and related enzymes [Nucleotide transport and metabolism]
Probab=70.85 E-value=15 Score=23.84 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=33.2
Q ss_pred cceEEEEEeCCCccEEEeeeee-ecccCCHHHHHHHHHHHHHHHHHHCC
Q 042834 22 TAGLGVIIRDSRGKAVAATVQK-VSFRGDVAYMEAAAVNLGIQVAQNAK 69 (98)
Q Consensus 22 ~~g~G~vird~~G~~i~~~~~~-~~~~~~~~~aE~~Al~~aL~~a~~~g 69 (98)
..-+|+|+.+.+|.++..+... ........+||..+|..=..+...++
T Consensus 31 ~~pvg~vlV~~~g~v~a~g~n~~~~~~d~t~HaE~~~I~~~~~~~~~~~ 79 (169)
T KOG1018|consen 31 EVPVGAVLVHMDGKVLASGGNMVNEKKDPTAHAEVIAIREEEVMCKSLR 79 (169)
T ss_pred CCceEEEEEeCCCeEEecccceecccCCcchhhHHHHHhhHHHHhhhcC
Confidence 4557888888888888876655 34445567899999988444444443
No 31
>KOG3343 consensus Vesicle coat complex COPI, zeta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.91 E-value=24 Score=22.98 Aligned_cols=39 Identities=10% Similarity=0.100 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHCCC---------------------ccEEEEechHHHHHHHhcCCCCC
Q 042834 55 AAAVNLGIQVAQNAKF---------------------LPIIVESDSKEVVDLARNRNCLS 93 (98)
Q Consensus 55 ~~Al~~aL~~a~~~g~---------------------~~v~~esDs~~vv~~l~~~~~~~ 93 (98)
+.+++.|+.+....+. .-|++|+|...++..+..+..+-
T Consensus 91 L~~l~dal~llLr~nveKr~llEN~D~i~L~~DEiiD~GvILEtdp~~ia~rv~~~~~~~ 150 (175)
T KOG3343|consen 91 LTCLFDALSLLLRKNVEKRELLENLDLIFLALDEIIDGGVILETDPNQIAQRVALRPTDE 150 (175)
T ss_pred HHHHHHHHHHHHHhChhHHHHHhhhccceeehhhhccCceEEecCHHHHHHHhccCCCCc
Confidence 4567777777765543 46899999999999998877665
No 32
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=63.66 E-value=14 Score=23.55 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=23.6
Q ss_pred eEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHH
Q 042834 24 GLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLG 61 (98)
Q Consensus 24 g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~a 61 (98)
-+|+||-+.. +++..+..... --.+||..||..+
T Consensus 29 ~VG~VIV~~~-~Ivg~G~h~~a---G~pHAEv~Al~~a 62 (146)
T COG0117 29 SVGCVIVKDG-EIVGEGYHEKA---GGPHAEVCALRMA 62 (146)
T ss_pred ceeEEEEECC-EEEeeeecCCC---CCCcHHHHHHHHc
Confidence 4678887765 77776554332 2359999999886
No 33
>PF11080 DUF2622: Protein of unknown function (DUF2622); InterPro: IPR022597 This family is conserved in the Enterobacteriaceae family. The function is not known.
Probab=61.89 E-value=18 Score=21.38 Aligned_cols=42 Identities=17% Similarity=0.282 Sum_probs=32.6
Q ss_pred cceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHH
Q 042834 22 TAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQ 63 (98)
Q Consensus 22 ~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~ 63 (98)
.+|+--.++|++|..-.-.+..+...+....-|..++..+|-
T Consensus 32 ~~GF~~tl~D~~G~~HeLgtntfgl~S~l~~~eV~~la~~la 73 (96)
T PF11080_consen 32 RAGFSTTLTDEDGNPHELGTNTFGLISALSAEEVAQLARGLA 73 (96)
T ss_pred hcCceeEEecCCCCEeecCCCeEEEEecCCHHHHHHHHHHHh
Confidence 578888999999999988888888776665566666666664
No 34
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=60.65 E-value=14 Score=26.77 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=25.2
Q ss_pred eEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHH
Q 042834 24 GLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQ 63 (98)
Q Consensus 24 g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~ 63 (98)
-+|+||-+ +|+++..+..... . ..+||..|+..+-+
T Consensus 26 ~vGaviv~-~g~ii~~g~n~~~--g-~~HAE~~ai~~a~~ 61 (367)
T PRK10786 26 NVGCVIVK-DGEIVGEGYHQRA--G-EPHAEVHALRMAGE 61 (367)
T ss_pred CEEEEEEe-CCEEEEEEeCCCC--C-CCCHHHHHHHHHhh
Confidence 46777775 6888876654322 2 26999999998754
No 35
>PRK08298 cytidine deaminase; Validated
Probab=58.67 E-value=38 Score=21.18 Aligned_cols=52 Identities=17% Similarity=0.155 Sum_probs=34.7
Q ss_pred eEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEE
Q 042834 24 GLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVE 76 (98)
Q Consensus 24 g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~e 76 (98)
.+|..++..+|+++.+..--....+--.-||..|+..++..- ...+..|.+-
T Consensus 24 ~VgAAllt~dG~i~tG~NvEnas~~~t~CAEr~Ai~~av~~G-~~~~~~i~v~ 75 (136)
T PRK08298 24 GGAAAMRVEDGTILTSVAPEVINASTELCMETGAICEAHKLQ-KRVTHSICVA 75 (136)
T ss_pred ceeEEEEeCCCCEEEEEeecCCCCCcchhHHHHHHHHHHHCC-CceEEEEEEE
Confidence 789999999999988765433334445789999998877432 1223445554
No 36
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=58.34 E-value=14 Score=23.96 Aligned_cols=22 Identities=14% Similarity=0.371 Sum_probs=19.7
Q ss_pred HHHHHHHHHHCCCccEEEEech
Q 042834 58 VNLGIQVAQNAKFLPIIVESDS 79 (98)
Q Consensus 58 l~~aL~~a~~~g~~~v~~esDs 79 (98)
.+.+|+.+.+.|.+.|++||+-
T Consensus 106 vr~aId~m~~~g~~eVvLeTe~ 127 (165)
T KOG3139|consen 106 VRKAIDAMRSRGYSEVVLETEV 127 (165)
T ss_pred HHHHHHHHHHCCCcEEEEeccc
Confidence 4678999999999999999974
No 37
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase
Probab=56.12 E-value=18 Score=26.49 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=24.2
Q ss_pred EEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHH
Q 042834 25 LGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQ 63 (98)
Q Consensus 25 ~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~ 63 (98)
+|+||-+ +|+++..+..... .+ .+||..||..|-.
T Consensus 56 VGaViV~-~g~Ii~~g~n~~~--g~-~HAEi~Ai~~a~~ 90 (380)
T PLN02807 56 VGCVIVK-DGRIVGEGFHPKA--GQ-PHAEVFALRDAGD 90 (380)
T ss_pred EEEEEEE-CCEEEEEEeCCCC--CC-cCHHHHHHHHhhh
Confidence 6667664 4888876654332 23 6999999988755
No 38
>PF06006 DUF905: Bacterial protein of unknown function (DUF905); InterPro: IPR009253 This family consists of several short hypothetical proteobacterial proteins of unknown function.; PDB: 2HJJ_A.
Probab=55.66 E-value=24 Score=19.61 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=14.9
Q ss_pred cCCCcceEEEEEeCCCccEEEeeee
Q 042834 18 LSDQTAGLGVIIRDSRGKAVAATVQ 42 (98)
Q Consensus 18 ~~~~~~g~G~vird~~G~~i~~~~~ 42 (98)
.++...-+-.||||.+|..+-....
T Consensus 26 eDdqg~HfRlvvRd~~g~mvWRaWN 50 (70)
T PF06006_consen 26 EDDQGTHFRLVVRDTEGQMVWRAWN 50 (70)
T ss_dssp ES-SSS--EEEEE-SS--EEEEEES
T ss_pred ccCCCCeEEEEEEcCCCcEEEEeec
Confidence 3456778899999999999887654
No 39
>PRK15000 peroxidase; Provisional
Probab=54.71 E-value=44 Score=22.00 Aligned_cols=63 Identities=11% Similarity=0.024 Sum_probs=41.2
Q ss_pred eEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCC--------ccEEEEechHHHHHHHhc
Q 042834 24 GLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKF--------LPIIVESDSKEVVDLARN 88 (98)
Q Consensus 24 g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~--------~~v~~esDs~~vv~~l~~ 88 (98)
-=+.++-|.+|.+........+. .....|++.++.+|++..+.|. -.=.++.+...+.+.+.+
T Consensus 125 ~r~tfiID~~G~I~~~~~~~~~~--gr~~~eilr~l~al~~~~~~~~~~p~~w~~g~~~~~~~~~~~~~~~~~ 195 (200)
T PRK15000 125 LRGSFLIDANGIVRHQVVNDLPL--GRNIDEMLRMVDALQFHEEHGDVCPAQWEKGKEGMNASPDGVAKYLAE 195 (200)
T ss_pred EeEEEEECCCCEEEEEEecCCCC--CCCHHHHHHHHHHhhhHHhcCCCcCCCCCCCCceeccCHHHHHHHHHH
Confidence 34668889999998876654433 2468899999999999876642 233444455544444443
No 40
>PRK13191 putative peroxiredoxin; Provisional
Probab=54.22 E-value=43 Score=22.33 Aligned_cols=42 Identities=17% Similarity=0.135 Sum_probs=31.6
Q ss_pred EEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCC
Q 042834 26 GVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAK 69 (98)
Q Consensus 26 G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g 69 (98)
+.+|-|.+|.+.......... ..+.-|++.++.+|+.....|
T Consensus 126 ~tfIID~~G~Ir~~~~~~~~~--gr~~~eilr~l~alq~~~~~~ 167 (215)
T PRK13191 126 AVFIVDDKGTVRLILYYPMEI--GRNIDEILRAIRALQLVDKAG 167 (215)
T ss_pred EEEEECCCCEEEEEEecCCCC--CCCHHHHHHHHHHhhhhhhcC
Confidence 568899999998876554432 347889999999999876553
No 41
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=53.20 E-value=25 Score=23.03 Aligned_cols=79 Identities=14% Similarity=0.274 Sum_probs=43.6
Q ss_pred CCCCceEEEEecceeecCCCcceEEEEEeCCCccEEEeeeeeecccCCHHH----HHHHHHHHHHHHHHHCCCccEEEEe
Q 042834 2 SPPNGWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAY----MEAAAVNLGIQVAQNAKFLPIIVES 77 (98)
Q Consensus 2 ~P~~g~~k~n~D~s~~~~~~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~----aE~~Al~~aL~~a~~~g~~~v~~es 77 (98)
.||.||+-+-+==++..+....|+ +=+|-..++++....+.++.---|-+ .=-..|+.||+-|+.+|+.+|.+-.
T Consensus 60 ~~~~g~V~~~~y~~v~~d~~ivG~-i~lRh~Ln~~ll~~gGHIGY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtc 138 (174)
T COG3981 60 NLPEGWVPASTYWAVDEDGQIVGF-INLRHQLNDFLLEEGGHIGYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTC 138 (174)
T ss_pred CCCCCceeceeEEEEecCCcEEEE-EEeeeecchHHHhcCCcccceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 456666665554444442222221 22555555554443333322111110 1135689999999999999999998
Q ss_pred chHH
Q 042834 78 DSKE 81 (98)
Q Consensus 78 Ds~~ 81 (98)
|...
T Consensus 139 d~dN 142 (174)
T COG3981 139 DKDN 142 (174)
T ss_pred CCCC
Confidence 8543
No 42
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=49.31 E-value=84 Score=22.91 Aligned_cols=63 Identities=17% Similarity=0.157 Sum_probs=37.8
Q ss_pred ceEEEEEeCCCc---cEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEechHHHHHHH
Q 042834 23 AGLGVIIRDSRG---KAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKEVVDLA 86 (98)
Q Consensus 23 ~g~G~vird~~G---~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l 86 (98)
.-+|-|+|.+.| +|...+...++.. +...||+..+..+.+....+|+.++.++.-...+++.+
T Consensus 86 ~Y~g~VfR~~~gr~rEf~Q~GvEiiG~~-~~~~aDaEvi~l~~~~L~~lgl~~~~i~ig~~~il~~l 151 (373)
T PRK12295 86 AYLGEVFRQRRDRASEFLQAGIESFGRA-DPAAADAEVLALALEALAALGPGDLEVRLGDVGLFAAL 151 (373)
T ss_pred EEEccEEECCCCCCCcceEeeEEeeCCC-CCccchHHHHHHHHHHHHHcCCCceEEEeCCHHHHHHH
Confidence 344667776544 3444454445422 33455666666677788899998888875555444444
No 43
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=49.24 E-value=59 Score=20.27 Aligned_cols=45 Identities=20% Similarity=0.230 Sum_probs=29.3
Q ss_pred CCCcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHH
Q 042834 19 SDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVA 65 (98)
Q Consensus 19 ~~~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a 65 (98)
....--+|++.|+.+...-..+..++-.+.|..+|+ .+..+|..|
T Consensus 80 ~~~~dhFgFIcrEs~~~~~~~f~CyVFqc~Se~la~--eI~lti~QA 124 (129)
T cd01269 80 IKHVDHFGFICRESPEPGLSQYICYVFQCADESLVD--EVMLTLKQA 124 (129)
T ss_pred CCCcceEEEEeccCCCCCcceEEEEEEEcCCHHHHH--HHHHHHHHH
Confidence 345677999999988665444555566677777666 444454443
No 44
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=48.87 E-value=61 Score=21.18 Aligned_cols=41 Identities=12% Similarity=-0.010 Sum_probs=31.4
Q ss_pred EEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHC
Q 042834 26 GVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNA 68 (98)
Q Consensus 26 G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~ 68 (98)
..+|-|.+|.++........ ......|+++.+.+|+.....
T Consensus 121 ~tfIID~~G~I~~~~~~~~~--~~~~~~eil~~l~alq~~~~~ 161 (187)
T PRK10382 121 ATFVVDPQGIIQAIEVTAEG--IGRDASDLLRKIKAAQYVASH 161 (187)
T ss_pred EEEEECCCCEEEEEEEeCCC--CCCCHHHHHHHHHhhhhHhhc
Confidence 55888999999887654322 235788999999999997765
No 45
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=48.05 E-value=55 Score=22.75 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=32.2
Q ss_pred EEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCC
Q 042834 26 GVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAK 69 (98)
Q Consensus 26 G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g 69 (98)
+.+|-|.+|.+.......... .....|++.++.||+...+.|
T Consensus 190 ~tFIID~dG~I~~~~~~~~~~--gr~v~eiLr~l~alq~~~~~g 231 (261)
T PTZ00137 190 ASVLVDKAGVVKHVAVYDLGL--GRSVDETLRLFDAVQFAEKTG 231 (261)
T ss_pred EEEEECCCCEEEEEEEeCCCC--CCCHHHHHHHHHHhchhhhcC
Confidence 558889999998877554433 346889999999999877665
No 46
>PRK13190 putative peroxiredoxin; Provisional
Probab=46.91 E-value=69 Score=21.01 Aligned_cols=43 Identities=19% Similarity=0.068 Sum_probs=31.8
Q ss_pred EEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCC
Q 042834 25 LGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAK 69 (98)
Q Consensus 25 ~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g 69 (98)
=+.+|-|.+|.+......... ......|++.++.+|+...+.|
T Consensus 118 p~~fiId~~G~I~~~~~~~~~--~gr~~~ellr~l~~l~~~~~~~ 160 (202)
T PRK13190 118 RGVFIIDPNQIVRWMIYYPAE--TGRNIDEIIRITKALQVNWKRK 160 (202)
T ss_pred eEEEEECCCCEEEEEEEeCCC--CCCCHHHHHHHHHHhhhHHhcC
Confidence 466888999988876544333 2346889999999999987664
No 47
>PLN02660 pantoate--beta-alanine ligase
Probab=46.03 E-value=35 Score=24.10 Aligned_cols=37 Identities=16% Similarity=0.208 Sum_probs=27.8
Q ss_pred EEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHH
Q 042834 28 IIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQN 67 (98)
Q Consensus 28 vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~ 67 (98)
++|+.+|--+.+. ....+...-.++.+|..+|+.+.+
T Consensus 181 tvRe~dGLA~SSR---N~yLs~~eR~~A~~l~~~L~~~~~ 217 (284)
T PLN02660 181 IVREADGLAMSSR---NVRLSAEEREKALSISRSLARAEE 217 (284)
T ss_pred ceECCCCCeeccc---cccCCHHHHHHHHHHHHHHHHHHH
Confidence 6899999765544 445556677889999999998854
No 48
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=45.16 E-value=77 Score=19.94 Aligned_cols=43 Identities=21% Similarity=0.166 Sum_probs=31.0
Q ss_pred EEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCC
Q 042834 26 GVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKF 70 (98)
Q Consensus 26 G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~ 70 (98)
..++-|.+|.++.......+. .....|++..+..++++.+.+.
T Consensus 122 ~~~lID~~G~I~~~~~~~~~~--~~~~~~il~~l~~~~~~~~~~~ 164 (173)
T cd03015 122 GTFIIDPEGIIRHITVNDLPV--GRSVDETLRVLDALQFVEEHGE 164 (173)
T ss_pred EEEEECCCCeEEEEEecCCCC--CCCHHHHHHHHHHhhhhhhcCC
Confidence 578999999998877543332 2245778888888888887764
No 49
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=44.60 E-value=43 Score=23.24 Aligned_cols=54 Identities=13% Similarity=-0.007 Sum_probs=35.8
Q ss_pred ceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEech
Q 042834 23 AGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDS 79 (98)
Q Consensus 23 ~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs 79 (98)
..+| +|-|.+++|- ....++....-+.+=+-++..-++|+.++|++.|.++.=|
T Consensus 28 ~HvA-iImDGNrRwA--~~~gl~~~~~GH~~G~~~l~~~~~~~~~~gIk~lTvYaFS 81 (256)
T PRK14828 28 GHVG-IIVDGNRRWA--RKAGFTDVSQGHRAGAAKIGEFLGWCDETDVNVVTLYLLS 81 (256)
T ss_pred CEEE-EEecCChHHH--HHcCCCchHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEE
Confidence 3444 4667777762 2222221113356778889999999999999999987653
No 50
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=44.58 E-value=1.1e+02 Score=21.50 Aligned_cols=65 Identities=14% Similarity=0.103 Sum_probs=41.7
Q ss_pred cceEEEEEeCCCc------cEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEechHHHHHHHhc
Q 042834 22 TAGLGVIIRDSRG------KAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKEVVDLARN 88 (98)
Q Consensus 22 ~~g~G~vird~~G------~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~~ 88 (98)
..-+|-|+|.+.- .+...+...+.. +...+|+..+..+++...++|+.++.++.-...+++.+-.
T Consensus 90 ~~y~g~VfR~~~~~~gr~re~~Q~g~Eiig~--~~~~adaEvi~l~~~~l~~lg~~~~~i~l~~~~il~~il~ 160 (314)
T TIGR00443 90 LCYAGNVFRTNESGAGRSREFTQAGVELIGA--GGPAADAEVIALLIEALKALGLKDFKIELGHVGLVRALLE 160 (314)
T ss_pred EEEeceEeecCCCcCCCcccccccceEEeCC--CCchhHHHHHHHHHHHHHHcCCCCeEEEeCcHHHHHHHHH
Confidence 4456788886442 233344444442 3446777777788888899999888887666666665543
No 51
>PF10983 DUF2793: Protein of unknown function (DUF2793); InterPro: IPR021251 This entry is represented by Bacteriophage D3112, Orf54. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=44.07 E-value=63 Score=18.64 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=29.6
Q ss_pred CceEEEEecceeecCCCcceEEEEEeCCCccEEEeee
Q 042834 5 NGWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATV 41 (98)
Q Consensus 5 ~g~~k~n~D~s~~~~~~~~g~G~vird~~G~~i~~~~ 41 (98)
.|.+-+..||++.--.-..|+-+.++|+.-..++..+
T Consensus 48 ~g~iA~~~~g~W~f~~P~~GW~a~v~~~~~~~~~~g~ 84 (87)
T PF10983_consen 48 DGKIAAWQDGAWRFLTPRPGWRAWVADEGALLVFDGS 84 (87)
T ss_pred CCCEEEEECCeEEEeCCCCCcEEEEeCCCcEEEEeCC
Confidence 4678889999998877788999999998776666544
No 52
>PF00336 DNA_pol_viral_C: DNA polymerase (viral) C-terminal domain; InterPro: IPR001462 This domain is at the C terminus of hepatitis B-type viruses P proteins and represents a functional domain that controls the RNase H activities of the protein. The domain is always associated with IPR000201 from INTERPRO and .; GO: 0004523 ribonuclease H activity
Probab=43.99 E-value=24 Score=24.05 Aligned_cols=53 Identities=15% Similarity=0.114 Sum_probs=31.7
Q ss_pred CCcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEechHHHH
Q 042834 20 DQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKEVV 83 (98)
Q Consensus 20 ~~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv 83 (98)
....|+|..+-. |.....++ ...+++.+|++|...|..+.. .++ +-+|+..|+
T Consensus 101 ATpTgwgi~i~~--~~~~~Tfs----~~l~IhtaELlaaClAr~~~~----~r~-l~tDnt~Vl 153 (245)
T PF00336_consen 101 ATPTGWGISITG--QRMRGTFS----KPLPIHTAELLAACLARLMSG----ARC-LGTDNTVVL 153 (245)
T ss_pred CCCCcceeeecC--ceeeeeec----ccccchHHHHHHHHHHHhccC----CcE-EeecCcEEE
Confidence 345677777643 33333333 345789999998866655432 233 777876653
No 53
>PF03259 Robl_LC7: Roadblock/LC7 domain; InterPro: IPR004942 This family includes proteins that are about 100 amino acids long and have been shown to be related []. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions []. This family also includes Golgi-associated MP1 adapter protein (Q9Y2Q5 from SWISSPROT) and MglB from Myxococcus xanthus (Q50883 from SWISSPROT), a protein involved in gliding motility []. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.; PDB: 2B95_B 1Z09_A 2E8J_B 2HZ5_B 3KYE_A 2ZL1_B 1SKO_B 3CPT_B 1VEU_B 1VET_B ....
Probab=43.71 E-value=56 Score=17.88 Aligned_cols=51 Identities=18% Similarity=0.261 Sum_probs=27.9
Q ss_pred eEEEEEeCCCccEEEeeeeeecccCCHHHHHHHH-----HHHHHH-HHHHC---CCccEEEEechH
Q 042834 24 GLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAA-----VNLGIQ-VAQNA---KFLPIIVESDSK 80 (98)
Q Consensus 24 g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~A-----l~~aL~-~a~~~---g~~~v~~esDs~ 80 (98)
--|.++-|.+|..+.... . +...+|.+| ++.+.+ .+.+. .++.+.++++..
T Consensus 15 v~~~~l~~~dG~~i~~~~--~----~~~~~~~~aa~~a~~~~~~~~~~~~l~~~~~~~v~i~~~~~ 74 (91)
T PF03259_consen 15 VRGAVLVDKDGLVIASSG--I----DDDDAEKLAAMAASLLAAAEKLAKELGEGELEQVRIETEKG 74 (91)
T ss_dssp EEEEEEEETTSEEEEETS--S----SHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEEEESSE
T ss_pred eeEEEEEcCCCCEEEEec--C----CcccHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEEECCC
Confidence 347788899999998711 1 222333322 222222 22333 368888888753
No 54
>PLN02182 cytidine deaminase
Probab=43.65 E-value=56 Score=23.76 Aligned_cols=42 Identities=14% Similarity=-0.050 Sum_probs=30.4
Q ss_pred CcceEEEEEeCCCccEEEeeeeeecccCC--HHHHHHHHHHHHH
Q 042834 21 QTAGLGVIIRDSRGKAVAATVQKVSFRGD--VAYMEAAAVNLGI 62 (98)
Q Consensus 21 ~~~g~G~vird~~G~~i~~~~~~~~~~~~--~~~aE~~Al~~aL 62 (98)
...-+|.++|..+|++..+..--+....- ...||-.|+-.++
T Consensus 64 S~F~VGAa~l~~sG~iy~GvNVEnas~pl~~tICAEr~AI~~A~ 107 (339)
T PLN02182 64 SKYKVGAVGRASSGRVYLGVNVDFPGLPLHHSIHAEQFLVTNLA 107 (339)
T ss_pred cCCeeeEEEEeCCCCEEEEEEeecCCCccCCccCHHHHHHHHHH
Confidence 45678999999999998876643333222 4699999987775
No 55
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=43.18 E-value=37 Score=23.95 Aligned_cols=38 Identities=16% Similarity=0.210 Sum_probs=28.0
Q ss_pred EEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHH
Q 042834 27 VIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQN 67 (98)
Q Consensus 27 ~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~ 67 (98)
=++|+.+|--+.+ +....+...-.++.+|..+|+.+.+
T Consensus 177 ptvRe~dGLA~SS---RN~~Ls~~eR~~A~~l~~~L~~a~~ 214 (282)
T TIGR00018 177 PIVREEDGLALSS---RNVYLTAEQRKIAPGLYRALQAIAQ 214 (282)
T ss_pred CceECCCCCchhh---ccccCCHHHHHHHHHHHHHHHHHHH
Confidence 3689999975544 4455556777889999999988854
No 56
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=42.19 E-value=29 Score=27.33 Aligned_cols=38 Identities=18% Similarity=0.182 Sum_probs=30.7
Q ss_pred CCCCceEEEEecceeecCCCcceEEEEEeCCCccEEEeeee
Q 042834 2 SPPNGWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQ 42 (98)
Q Consensus 2 ~P~~g~~k~n~D~s~~~~~~~~g~G~vird~~G~~i~~~~~ 42 (98)
-|+.-.+|+|-|.-|.+.++. |+.+||..|.|-..+..
T Consensus 4 ~~~~~rlkv~~D~~f~p~~~~---GV~frn~~g~F~~~G~~ 41 (637)
T TIGR03693 4 LPAHAKLKANKDTFFLPDPNG---GAYFRNNAGSFRLDGDG 41 (637)
T ss_pred CCccccccccCcceEeecCCC---cEEEecCCceEEEcchh
Confidence 467788999999999987543 78999999999776543
No 57
>PLN02402 cytidine deaminase
Probab=42.08 E-value=65 Score=23.06 Aligned_cols=66 Identities=11% Similarity=-0.004 Sum_probs=42.1
Q ss_pred CcceEEEEEeCCCccEEEeeeeeecccCC--HHHHHHHHHHHHHHHHHHCCCccEEEE----echHHHHHHHh
Q 042834 21 QTAGLGVIIRDSRGKAVAATVQKVSFRGD--VAYMEAAAVNLGIQVAQNAKFLPIIVE----SDSKEVVDLAR 87 (98)
Q Consensus 21 ~~~g~G~vird~~G~~i~~~~~~~~~~~~--~~~aE~~Al~~aL~~a~~~g~~~v~~e----sDs~~vv~~l~ 87 (98)
...-+|.+++..+|++..+..--...... ...||..|+..++.-- +..+..|.+- .-|.+++.-+.
T Consensus 44 S~F~VGAa~l~~~G~i~~GvNVEnasy~l~~tiCAEr~Ai~~av~~G-~~~i~~iaV~~sPCG~CRQ~l~Ef~ 115 (303)
T PLN02402 44 SKYHVGAVGLGSSGRIFLGVNLEFPGLPLHHSVHAEQFLITNLTLNA-EPHLKYVAVSAAPCGHCRQFFQEIR 115 (303)
T ss_pred CCCeeeEEEEeCCCCEEEEEeeecCCCCCCCcccHHHHHHHHHHHcC-CCceEEEEEEeCCCcccHHHHHHhc
Confidence 45678999999999988876543332211 4699999988876432 2234444443 35667766663
No 58
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=41.43 E-value=1.1e+02 Score=20.70 Aligned_cols=66 Identities=12% Similarity=0.212 Sum_probs=42.3
Q ss_pred CcceEEEEEeCCCc------cEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEechHHHHHHHhc
Q 042834 21 QTAGLGVIIRDSRG------KAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKEVVDLARN 88 (98)
Q Consensus 21 ~~~g~G~vird~~G------~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~~ 88 (98)
+...+|-|+|++.. .+.......+.. +...+|+..+..+.+....+++.++.++.-...+++.+-+
T Consensus 84 k~~y~g~vfR~e~~~~g~~re~~Q~g~Eiig~--~~~~~daE~i~l~~~~l~~lg~~~~~i~l~~~~i~~~l~~ 155 (261)
T cd00773 84 KLYYIGPVFRYERPQKGRYREFYQVGVEIIGS--DSPLADAEVIALAVEILEALGLKDFQIKINHRGILDGIAG 155 (261)
T ss_pred EEEEEcCEEecCCCCCCCccceEEeceeeeCC--CChHHHHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHhh
Confidence 34566777776554 244444444443 3345666666677788888999888888776777766654
No 59
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=41.28 E-value=58 Score=22.53 Aligned_cols=33 Identities=9% Similarity=0.101 Sum_probs=26.9
Q ss_pred HHHHHHHHHHCCCccEEEEechHHHHHHHhcCC
Q 042834 58 VNLGIQVAQNAKFLPIIVESDSKEVVDLARNRN 90 (98)
Q Consensus 58 l~~aL~~a~~~g~~~v~~esDs~~vv~~l~~~~ 90 (98)
+.+..+-|.+.+..+|++-+|...+.+.+.+-+
T Consensus 31 I~rV~e~a~~s~~~rvvVATDde~I~~av~~~G 63 (247)
T COG1212 31 IVRVAERALKSGADRVVVATDDERIAEAVQAFG 63 (247)
T ss_pred HHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhC
Confidence 344556677779999999999999999998754
No 60
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=40.67 E-value=53 Score=22.40 Aligned_cols=47 Identities=11% Similarity=-0.014 Sum_probs=34.9
Q ss_pred EEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEe
Q 042834 28 IIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVES 77 (98)
Q Consensus 28 vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~es 77 (98)
+|-|-+|+|-. ..-++. ..-+.+=+.++..-++++.++|++.|.++.
T Consensus 5 iImDGNrRwAk--~~gl~~-~~GH~~G~~~~~~v~~~c~~~GI~~lT~ya 51 (226)
T TIGR00055 5 IIMDGNGRWAK--KKGKPR-AYGHKAGVKSLRRILRWCANLGVECLTLYA 51 (226)
T ss_pred EEcCCCHHHHH--HCCCCh-hHhHHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 57787777732 222322 346777888999999999999999998875
No 61
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=40.40 E-value=49 Score=19.60 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=24.2
Q ss_pred ceEEEEecceeecCCCcceEEEEEeCCCccEEEeee
Q 042834 6 GWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATV 41 (98)
Q Consensus 6 g~~k~n~D~s~~~~~~~~g~G~vird~~G~~i~~~~ 41 (98)
.-+++.++-.+...-...-+|+.|+|.+|..+....
T Consensus 35 e~~~i~i~~~~~~~i~~~~~~~~i~~~~g~~v~~~~ 70 (142)
T PF14524_consen 35 EPIRIRIDYEVNEDIDDPVFGFAIRDSDGQRVFGTN 70 (142)
T ss_dssp SEEEEEEEEEESS-EEEEEEEEEEEETT--EEEEEE
T ss_pred CEEEEEEEEEECCCCCccEEEEEEEcCCCCEEEEEC
Confidence 345666666665555567899999999999888644
No 62
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=39.15 E-value=59 Score=22.28 Aligned_cols=47 Identities=11% Similarity=-0.041 Sum_probs=35.4
Q ss_pred EEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEe
Q 042834 28 IIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVES 77 (98)
Q Consensus 28 vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~es 77 (98)
+|-|-+|+|-. ...++. ..-+.+=+.++..-++++.++|++.|.++.
T Consensus 12 iImDGNrRwAk--~~gl~~-~~GH~~G~~~~~~i~~~c~~~GI~~lT~Ya 58 (230)
T PRK14837 12 IIMDGNRRWAL--KKGLSF-FEGHKEGLKRAKEIVKHSLKLGIKYLSLYV 58 (230)
T ss_pred EEccCCHHHHH--HCCCch-hhhHHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 57788888733 222332 356778889999999999999999998875
No 63
>PF04775 Bile_Hydr_Trans: Acyl-CoA thioester hydrolase/BAAT N-terminal region; InterPro: IPR006862 This entry presents the N-termini of acyl-CoA thioester hydrolase and bile acid-CoA:amino acid N-acetyltransferase (BAAT) []. This region is not thought to contain the active site of either enzyme. Thioesterase isoforms have been identified in peroxisomes, cytoplasm and mitochondria, where they are thought to have distinct functions in lipid metabolism []. For example, in peroxisomes, the hydrolase acts on bile-CoA esters [].; GO: 0016290 palmitoyl-CoA hydrolase activity, 0006629 lipid metabolic process; PDB: 3HLK_B 3K2I_B.
Probab=38.98 E-value=11 Score=23.08 Aligned_cols=44 Identities=5% Similarity=-0.026 Sum_probs=27.7
Q ss_pred cceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHH
Q 042834 22 TAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQN 67 (98)
Q Consensus 22 ~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~ 67 (98)
.-..+...-|++|.+-.+....+.+. =.-+|.++|+|+|+-...
T Consensus 32 w~S~A~f~Ad~~G~VDl~~~~p~~Gs--Y~gvdpMGLfWSm~p~~~ 75 (126)
T PF04775_consen 32 WQSYATFRADENGIVDLSRDAPLGGS--YTGVDPMGLFWSMKPTPG 75 (126)
T ss_dssp EEEEEEEE--TTS-EETTTS-EEEES--SEES-TTHHHHT-EE---
T ss_pred EEEEEEEEcCCCCeEEeccCCCCCcE--EcCcccccceEEcccccc
Confidence 45678889999999888777777654 457899999999987543
No 64
>PF15374 CCDC71L: Coiled-coil domain-containing protein 71L
Probab=38.88 E-value=40 Score=24.78 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCccEEEEe
Q 042834 49 DVAYMEAAAVNLGIQVAQNAKFLPIIVES 77 (98)
Q Consensus 49 ~~~~aE~~Al~~aL~~a~~~g~~~v~~es 77 (98)
+..++|+++++.+|+ +-||+..|+.|
T Consensus 35 ~~te~qLv~Flq~Lr---~eGfqP~ILrS 60 (376)
T PF15374_consen 35 SDTEAQLVAFLQGLR---HEGFQPTILRS 60 (376)
T ss_pred chhHHHHHHHHHHHh---hcCCCceeecc
Confidence 467999999998885 88999888864
No 65
>PRK09027 cytidine deaminase; Provisional
Probab=38.61 E-value=75 Score=22.63 Aligned_cols=67 Identities=12% Similarity=0.123 Sum_probs=42.3
Q ss_pred CcceEEEEEeCCCccEEEeeeeeec--ccCCHHHHHHHHHHHHHHHHHHCCCccEEEE----echHHHHHHHhc
Q 042834 21 QTAGLGVIIRDSRGKAVAATVQKVS--FRGDVAYMEAAAVNLGIQVAQNAKFLPIIVE----SDSKEVVDLARN 88 (98)
Q Consensus 21 ~~~g~G~vird~~G~~i~~~~~~~~--~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~e----sDs~~vv~~l~~ 88 (98)
...-+|.+++..+|++..+..--+. .......||-.|+..++.- -+.++..|.+- +-|.+++.-+..
T Consensus 69 S~F~VGAa~~~~sG~iy~GvNvE~~~~s~~~tiCAEr~Ai~~a~~~-Ge~~i~~I~v~~sPCG~CRQ~l~E~~~ 141 (295)
T PRK09027 69 SHFNVGAIARGVSGNFYFGANMEFAGAALQQTVHAEQSAISHAWLR-GEKAIADITVNYTPCGHCRQFMNELNS 141 (295)
T ss_pred CCCcEEEEEEeCCCCEEEEEeeccCCCCCCCCcCHHHHHHHHHHHC-CCCceEEEEEEecCchhhHHHHHHhCC
Confidence 4567899999999999877654332 2234579999999887642 12344444432 345666666543
No 66
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=38.01 E-value=91 Score=18.73 Aligned_cols=52 Identities=15% Similarity=0.212 Sum_probs=33.7
Q ss_pred EEEEEeCCCccEEEeeeee-------ecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEe
Q 042834 25 LGVIIRDSRGKAVAATVQK-------VSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVES 77 (98)
Q Consensus 25 ~G~vird~~G~~i~~~~~~-------~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~es 77 (98)
+.=+|.|..|..+.+.+.. .....+...|+..+.+.| +-+.+.|+..|+|.-
T Consensus 28 yaQvidd~~g~tlasaST~ek~~~~~~~~~~n~~aA~~vG~lla-~ra~~~gi~~vvfDr 86 (109)
T CHL00139 28 YAQIIDDTNGKTLVACSTLEPDVKSSLSSTSTCDASKLVGQKLA-KKSLKKGITKVVFDR 86 (109)
T ss_pred EEEEEECCCCCEEEEEecCchhhhccccCCCCHHHHHHHHHHHH-HHHHHCCCCEEEEcC
Confidence 3447778888888876632 122445556666666555 345688999988863
No 67
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=37.94 E-value=53 Score=23.40 Aligned_cols=51 Identities=18% Similarity=0.023 Sum_probs=36.4
Q ss_pred eEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEec
Q 042834 24 GLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESD 78 (98)
Q Consensus 24 g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esD 78 (98)
.+| ||-|-+|+|- ....++ ...-+.+=+.++..-++++.++|++.|.++.=
T Consensus 70 HVA-iIMDGNrRwA--k~~gl~-~~~GH~~G~~~l~~v~~~c~~lGI~~lTvYaF 120 (296)
T PRK14827 70 HVA-IVMDGNGRWA--TQRGLA-RTEGHKMGEAVVIDIACGAIELGIKWLSLYAF 120 (296)
T ss_pred eEE-EeccCchHHH--HHCCCC-HhHHHHHHHHHHHHHHHHHHHcCCCEEEEeee
Confidence 344 4778888773 222232 23567777888999999999999999988753
No 68
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=37.88 E-value=1.2e+02 Score=19.89 Aligned_cols=42 Identities=19% Similarity=0.112 Sum_probs=30.4
Q ss_pred EEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCC
Q 042834 26 GVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAK 69 (98)
Q Consensus 26 G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g 69 (98)
+.+|-|.+|.+.......... .....|++.++.+|+.....|
T Consensus 119 ~~fiID~~G~I~~~~~~~~~~--gr~~~ell~~l~~lq~~~~~~ 160 (203)
T cd03016 119 AVFIIDPDKKIRLILYYPATT--GRNFDEILRVVDALQLTDKHK 160 (203)
T ss_pred EEEEECCCCeEEEEEecCCCC--CCCHHHHHHHHHHHhhHhhcC
Confidence 478889999988765543332 235788999999999886654
No 69
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=37.77 E-value=62 Score=22.17 Aligned_cols=47 Identities=17% Similarity=0.094 Sum_probs=35.1
Q ss_pred EEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEe
Q 042834 28 IIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVES 77 (98)
Q Consensus 28 vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~es 77 (98)
+|-|-+++| +....++ ...-+.+=+.++...++|+.++|++.|.++.
T Consensus 10 iImDGNrRw--A~~~gl~-~~~GH~~G~~~l~~~~~~c~~~gI~~lTvya 56 (233)
T PRK14833 10 IIMDGNGRW--AKLRGKA-RAAGHKKGVKTLREITIWCANHKLECLTLYA 56 (233)
T ss_pred EEccCCHHH--HHHCCCC-hhhhHHHHHHHHHHHHHHHHHcCCCEEEEee
Confidence 466777776 3333333 2356778889999999999999999998875
No 70
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=37.30 E-value=1.6e+02 Score=21.40 Aligned_cols=65 Identities=9% Similarity=0.066 Sum_probs=42.2
Q ss_pred cceEEEEEeCCC---c---cEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEechHHHHHHHhc
Q 042834 22 TAGLGVIIRDSR---G---KAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKEVVDLARN 88 (98)
Q Consensus 22 ~~g~G~vird~~---G---~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~~ 88 (98)
..-+|-|+|.+. | ++...+...++. +...||+..|..+.+....+|+.++.++--...+++.+-.
T Consensus 101 ~~y~g~vfR~~~~~~gr~ref~Q~g~EiiG~--~~~~aDaEvi~l~~~~l~~lgl~~~~i~i~~~~i~~~il~ 171 (391)
T PRK12292 101 LCYAGNVFRAQERGLGRSREFLQSGVELIGD--AGLEADAEVILLLLEALKALGLPNFTLDLGHVGLFRALLE 171 (391)
T ss_pred EEeeceeeecCCCcCCCccchhccceEEeCC--CCchHHHHHHHHHHHHHHHcCCCCeEEEeccHHHHHHHHH
Confidence 445677788643 2 344455555543 3346777777788888999999888887666666655543
No 71
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=37.30 E-value=64 Score=22.09 Aligned_cols=47 Identities=15% Similarity=0.061 Sum_probs=35.1
Q ss_pred EEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEe
Q 042834 28 IIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVES 77 (98)
Q Consensus 28 vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~es 77 (98)
+|-|-+++|-. ..-++ ...-+.+=+-++.+-++|+.++|++.|.++.
T Consensus 9 iImDGNrRwAk--~~g~~-~~~GH~~G~~~l~~i~~~~~~lgIk~lTvYa 55 (233)
T PRK14841 9 IIMDGNGRWAK--KRGLP-RIKGHQRGAEVLHNTVKWSLELGIKYLTAFS 55 (233)
T ss_pred EEccCCHHHHH--HCCCc-hhhhHHHHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 57787777633 22232 3356778888999999999999999998875
No 72
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=37.26 E-value=1.6e+02 Score=21.58 Aligned_cols=53 Identities=11% Similarity=0.001 Sum_probs=36.4
Q ss_pred CCCcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEE
Q 042834 19 SDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPII 74 (98)
Q Consensus 19 ~~~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~ 74 (98)
+....|...++++.+ .+-....+..... +.++-|+. .+.+|++|++.|++.+.
T Consensus 259 ~g~~Va~aL~l~~~~-~LyGRYwG~~~~~-~~LHFe~c-YYq~Ie~aI~~Gl~~f~ 311 (370)
T PF04339_consen 259 DGQPVAFALCLRGDD-TLYGRYWGCDEEI-PFLHFELC-YYQGIEYAIEHGLRRFE 311 (370)
T ss_pred CCeEEEEEEEEEeCC-EEEEeeecccccc-cCcchHHH-HHHHHHHHHHcCCCEEE
Confidence 456788899999843 3334444444443 56777764 57899999999998754
No 73
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=37.11 E-value=62 Score=19.43 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHCCCccEEEEechHH
Q 042834 57 AVNLGIQVAQNAKFLPIIVESDSKE 81 (98)
Q Consensus 57 Al~~aL~~a~~~g~~~v~~esDs~~ 81 (98)
.+...+++|.++|+++|.+++....
T Consensus 106 ll~~~~~~a~~~g~~~i~l~~~~~N 130 (150)
T PLN02706 106 IIEALTEHARSAGCYKVILDCSEEN 130 (150)
T ss_pred HHHHHHHHHHHcCCCEEEEEecccc
Confidence 3567889999999999999987655
No 74
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=36.59 E-value=1.3e+02 Score=20.13 Aligned_cols=49 Identities=18% Similarity=0.087 Sum_probs=35.8
Q ss_pred CCCcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCC
Q 042834 19 SDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAK 69 (98)
Q Consensus 19 ~~~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g 69 (98)
..+.+-=|.+|-|.+|.+.........-- -+.-|.+.++.||++..+.|
T Consensus 119 ~~g~a~R~~FIIDp~g~ir~~~v~~~~iG--Rn~dEilR~idAlq~~~~hg 167 (194)
T COG0450 119 EEGLALRGTFIIDPDGVIRHILVNPLTIG--RNVDEILRVIDALQFVAKHG 167 (194)
T ss_pred CCCcceeEEEEECCCCeEEEEEEecCCCC--cCHHHHHHHHHHHHHHHHhC
Confidence 33445568899999999877666544422 24679999999999987765
No 75
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=36.06 E-value=1.2e+02 Score=19.40 Aligned_cols=34 Identities=21% Similarity=0.182 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHHHHHHHCCC---ccEEEEechHHHHHHHh
Q 042834 49 DVAYMEAAAVNLGIQVAQNAKF---LPIIVESDSKEVVDLAR 87 (98)
Q Consensus 49 ~~~~aE~~Al~~aL~~a~~~g~---~~v~~esDs~~vv~~l~ 87 (98)
...+||+-++..|.+ .|. ..+.+..| +.+...+.
T Consensus 79 ~~~HAE~~aiqqA~d----~G~~~g~~~tm~Vd-r~vC~~C~ 115 (146)
T PF14437_consen 79 AKAHAEAGAIQQAYD----AGKTVGRSMTMYVD-RDVCGYCG 115 (146)
T ss_pred HHHHHHHHHHHHHHH----hcCccCCeEEEEEC-cccchHHH
Confidence 456777766655554 455 57888877 66555543
No 76
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=35.92 E-value=66 Score=23.23 Aligned_cols=47 Identities=19% Similarity=0.109 Sum_probs=34.8
Q ss_pred EEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEe
Q 042834 28 IIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVES 77 (98)
Q Consensus 28 vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~es 77 (98)
+|-|-+|+|- ....++. ..-+.+=+.+++.-++++.++|++.|.++.
T Consensus 25 iIMDGNrRwA--k~~gl~~-~~GH~~G~~~l~~il~~c~~lGIk~lTlYA 71 (322)
T PTZ00349 25 IIMDGNRRFA--KEKGLHS-AIGHFMGSKALIQIIEICIKLKIKILSVFS 71 (322)
T ss_pred EEcCCCHHHH--HHCCCCH-HHHHHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 4778888773 3322332 245777788999999999999999998875
No 77
>KOG0833 consensus Cytidine deaminase [Nucleotide transport and metabolism]
Probab=35.13 E-value=1.1e+02 Score=20.10 Aligned_cols=43 Identities=14% Similarity=-0.011 Sum_probs=30.6
Q ss_pred CcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHH
Q 042834 21 QTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQ 63 (98)
Q Consensus 21 ~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~ 63 (98)
...-+|.++|-+.|++..+..--+-....-..||-.|+..++.
T Consensus 40 S~fkVGA~~r~ssGrif~G~NVEn~~~~~sIcAEr~ai~~l~l 82 (173)
T KOG0833|consen 40 SKFKVGAAGRASSGRIFLGVNVENASYHHSICAERFAIANLAL 82 (173)
T ss_pred cCCceEEEEEecCCcEEEeeeecccCCCCcccHHHHHHHHHHH
Confidence 3456899999999998776655444445567899888766553
No 78
>PRK13599 putative peroxiredoxin; Provisional
Probab=34.64 E-value=1.4e+02 Score=19.93 Aligned_cols=42 Identities=17% Similarity=0.040 Sum_probs=30.6
Q ss_pred EEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCC
Q 042834 26 GVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAK 69 (98)
Q Consensus 26 G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g 69 (98)
..+|-|.+|.+........ ....+..|++..+.+|+.....+
T Consensus 121 ~tfIID~dG~Ir~~~~~p~--~~gr~~~eilr~l~~lq~~~~~~ 162 (215)
T PRK13599 121 AVFIVDDKGTIRLIMYYPQ--EVGRNVDEILRALKALQTADQYG 162 (215)
T ss_pred EEEEECCCCEEEEEEEcCC--CCCCCHHHHHHHHHHhhhhhhcC
Confidence 5578899999988754322 22457889999999998876654
No 79
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=34.58 E-value=1.2e+02 Score=20.93 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=32.8
Q ss_pred eEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEE
Q 042834 24 GLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIV 75 (98)
Q Consensus 24 g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~ 75 (98)
-+-..||=..|.|++. ..|+..+++-+..+++.|++-|++
T Consensus 53 pv~~MIRPRgGdFvY~------------~~E~~iM~~DI~~~~~lG~~GVV~ 92 (241)
T COG3142 53 PVYVMIRPRGGDFVYS------------DDELEIMLEDIRLARELGVQGVVL 92 (241)
T ss_pred ceEEEEecCCCCcccC------------hHHHHHHHHHHHHHHHcCCCcEEE
Confidence 3456788888988762 348888899999999999999987
No 80
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=34.55 E-value=69 Score=22.09 Aligned_cols=52 Identities=13% Similarity=0.099 Sum_probs=37.2
Q ss_pred ceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEec
Q 042834 23 AGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESD 78 (98)
Q Consensus 23 ~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esD 78 (98)
..+| +|-|-+++|-. ...++ ...-+.+=+.++.+-++|+.++|++.|.++.=
T Consensus 11 ~HVA-iImDGNrRwAk--~~gl~-~~~GH~~G~~~l~~i~~~c~~~GI~~lTvYaF 62 (239)
T PRK14839 11 LHVA-IIMDGNGRWAT--ARGLP-RLAGHRAGVEAIRRVVEAAPDLGIGTLTLYAF 62 (239)
T ss_pred CEEE-EEcCCCHHHHH--HCCCC-HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEe
Confidence 3444 47788887733 22232 23567788889999999999999999998753
No 81
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=34.49 E-value=1.7e+02 Score=21.10 Aligned_cols=58 Identities=14% Similarity=0.138 Sum_probs=32.5
Q ss_pred cceEEEEEeCCC------ccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEechHH
Q 042834 22 TAGLGVIIRDSR------GKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKE 81 (98)
Q Consensus 22 ~~g~G~vird~~------G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~ 81 (98)
..-+|-|+|++. -+|.......+... ...+|+-.+..+.+....+|+.++.++--...
T Consensus 100 ~~y~g~vfR~e~~~~gr~ref~Q~g~eiig~~--~~~~d~E~i~l~~e~l~~lg~~~~~i~i~~~~ 163 (397)
T TIGR00442 100 LYYIGPMFRYERPQKGRYRQFHQFGVEVIGSD--SPLADAEIIALAAEILKELGIKDFTLEINSLG 163 (397)
T ss_pred EEEEcCeecCCCCCCCcccceEEcCeeeeCCC--CHHHHHHHHHHHHHHHHHcCCCceEEEecCcc
Confidence 445666777542 22434444334332 24455555666678888899987766643333
No 82
>PF10115 HlyU: Transcriptional activator HlyU; InterPro: IPR018772 This is a family of hypothetical prokaryotic proteins, with no known function. One of the proteins in this entry corresponds to the transcriptional activator HlyU, indicating a possible similar role in other members.
Probab=34.38 E-value=1e+02 Score=18.09 Aligned_cols=49 Identities=8% Similarity=0.025 Sum_probs=35.1
Q ss_pred CcceE-EEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCC
Q 042834 21 QTAGL-GVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAK 69 (98)
Q Consensus 21 ~~~g~-G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g 69 (98)
+..-+ |.+-...+|.......-+-..+.+-..|..+++++|-++.-++|
T Consensus 38 GQfRvag~I~K~~~ge~k~H~FIRsD~~~s~edA~e~~lrKak~~IDq~G 87 (91)
T PF10115_consen 38 GQFRVAGRIEKEIDGETKTHRFIRSDLFPSREDAAEFMLRKAKQFIDQQG 87 (91)
T ss_pred CceeEEEEEEeccCCcEEEEEEEEccccCCHHHHHHHHHHHHHHHHHhhc
Confidence 33334 55556677777666666667778888999999999988877765
No 83
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=34.31 E-value=41 Score=17.63 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=12.2
Q ss_pred eEEEEecceeecCCCcce
Q 042834 7 WFKVNVDAAIKLSDQTAG 24 (98)
Q Consensus 7 ~~k~n~D~s~~~~~~~~g 24 (98)
.+++|.||+....-+..|
T Consensus 31 l~Rln~DGsLDttFg~~G 48 (55)
T TIGR02608 31 LARLNADGSLDTTFGTGG 48 (55)
T ss_pred EEEECCCCCccCCcCCCc
Confidence 567888888876644444
No 84
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=33.89 E-value=76 Score=21.84 Aligned_cols=52 Identities=10% Similarity=0.021 Sum_probs=37.6
Q ss_pred ceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEec
Q 042834 23 AGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESD 78 (98)
Q Consensus 23 ~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esD 78 (98)
..+| +|-|-+++|-. ....+ ...-+.+=+.++..-++|+.++|++.|.++.=
T Consensus 16 ~Hva-iImDGNrRwAk--~~g~~-~~~GH~~G~~~l~~iv~~c~~~gI~~vTvYaF 67 (243)
T PRK14829 16 RHIA-VVMDGNGRWAT--QRGLK-RTEGHKAGEPVLFDVVAGAIEAGVPYLSLYTF 67 (243)
T ss_pred CeEE-EecCCCHHHHH--HCCCC-hhHHHHHHHHHHHHHHHHHHHcCCCEEEEeee
Confidence 3444 47788887733 22233 33567788899999999999999999998753
No 85
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=33.69 E-value=47 Score=22.50 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=14.0
Q ss_pred HHHHHHHCCCccEEEEechH
Q 042834 61 GIQVAQNAKFLPIIVESDSK 80 (98)
Q Consensus 61 aL~~a~~~g~~~v~~esDs~ 80 (98)
.-+.+......++.+|||+.
T Consensus 188 ~~~~~~~ip~drillETD~P 207 (255)
T PF01026_consen 188 VRELIKAIPLDRILLETDAP 207 (255)
T ss_dssp HHHHHHHS-GGGEEEE-BTT
T ss_pred HHHHHhcCChhhEEEcCCCC
Confidence 34555788999999999973
No 86
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=33.32 E-value=74 Score=21.57 Aligned_cols=47 Identities=9% Similarity=-0.014 Sum_probs=34.6
Q ss_pred EEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEe
Q 042834 28 IIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVES 77 (98)
Q Consensus 28 vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~es 77 (98)
+|-|-+++|-. ...++ ...-+.+=+..+..-++|+.++|++.|.++.
T Consensus 6 iImDGNrRwA~--~~gl~-~~~GH~~G~~~~~~i~~~~~~~gI~~lTvya 52 (221)
T cd00475 6 FIMDGNRRWAK--QRGMD-RIEGHKAGAEKLRDILRWCLELGVKEVTLYA 52 (221)
T ss_pred EecCCCHHHHH--HCCCC-hhHhHHHHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 57777777632 22232 2356777888999999999999999999874
No 87
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric. This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.
Probab=33.26 E-value=1.1e+02 Score=21.59 Aligned_cols=66 Identities=11% Similarity=0.030 Sum_probs=41.3
Q ss_pred CcceEEEEEeCCCccEEEeeeeeecc--cCCHHHHHHHHHHHHHHHHHHCCCccEEE----EechHHHHHHHh
Q 042834 21 QTAGLGVIIRDSRGKAVAATVQKVSF--RGDVAYMEAAAVNLGIQVAQNAKFLPIIV----ESDSKEVVDLAR 87 (98)
Q Consensus 21 ~~~g~G~vird~~G~~i~~~~~~~~~--~~~~~~aE~~Al~~aL~~a~~~g~~~v~~----esDs~~vv~~l~ 87 (98)
...-+|.+++..+|++..+..--+.+ ..-...||-.|+..++..- +..+..|.+ .+-|.+++.-+.
T Consensus 41 S~F~VGAall~~~G~iy~GvNvE~~nas~~~tiCAEr~Ai~~Av~~G-e~~i~~Iav~~~PCG~CRQ~l~Ef~ 112 (283)
T TIGR01355 41 SKFNVGAVGRGSSGRFYLGVNVEFPGLPLHHSIHAEQFLISHLALNN-ERGLNDLAVSYAPCGHCRQFLNEIR 112 (283)
T ss_pred cCCeeeEEEEeCCCCEEEEEEeccCCCCCCccccHHHHHHHHHHHcC-CCceEEEEEEeCCcchhHHHHHHhc
Confidence 45678999999999998876642112 2224689999997776431 223343333 245666666664
No 88
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=32.99 E-value=1.4e+02 Score=19.24 Aligned_cols=41 Identities=15% Similarity=0.083 Sum_probs=30.3
Q ss_pred EEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHC
Q 042834 26 GVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNA 68 (98)
Q Consensus 26 G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~ 68 (98)
..++-|.+|.++......... .....|++..+.+++++...
T Consensus 121 ~tfiID~~G~I~~~~~~~~~~--~~~~~~ll~~l~~~~~~~~~ 161 (187)
T TIGR03137 121 GTFVIDPEGVIQAVEITDNGI--GRDASELLRKIKAAQYVAAH 161 (187)
T ss_pred EEEEECCCCEEEEEEEeCCCC--CCCHHHHHHHHHHhhhHHhc
Confidence 568889999998876542221 23678888888999998776
No 89
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=32.64 E-value=84 Score=21.85 Aligned_cols=47 Identities=13% Similarity=0.099 Sum_probs=35.3
Q ss_pred EEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEe
Q 042834 28 IIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVES 77 (98)
Q Consensus 28 vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~es 77 (98)
+|-|-+++|-. ....+ ...-+.+=+.++.+-++|+.++|+..|.++.
T Consensus 24 iImDGNrRwAk--~~gl~-~~~GH~~G~~~l~~i~~~c~~~gI~~lTvya 70 (253)
T PRK14832 24 VIMDGNGRWAT--SQGLP-RIAGHRQGARTLKELLRCCKDWGIKALTAYA 70 (253)
T ss_pred EECCCCHHHHH--HCCCC-HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 47788887733 22233 3356778888999999999999999998875
No 90
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=32.59 E-value=38 Score=22.67 Aligned_cols=73 Identities=16% Similarity=0.163 Sum_probs=38.7
Q ss_pred EEEecceeecCCCcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHH-----HHHHHHC-----CCccEEEEec
Q 042834 9 KVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLG-----IQVAQNA-----KFLPIIVESD 78 (98)
Q Consensus 9 k~n~D~s~~~~~~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~a-----L~~a~~~-----g~~~v~~esD 78 (98)
..++|=++.-... |+|++|++++..-.++.+.......+.+-++.| +.|+... ...-|...++
T Consensus 85 t~~~DPs~tl~~D-------I~d~~G~vi~~kGt~vNPLd~v~~~~~LvfiDg~D~~Qv~wa~~~~~~~~~~k~IL~~Gs 157 (202)
T TIGR02743 85 TWYFDPSITLAQD-------ILDEKGQVLAKKGTRINPLDRVSLSKTLLFFDADDPEQLAWAQQQLPSCPNVKWILTGGS 157 (202)
T ss_pred eEEeCCcEEecCc-------ccCCCCCEEECCCCEECCcccccCCceEEEEeCCCHHHHHHHHHhcccCCCeEEEEeCCC
Confidence 4456666654433 789999998866655544332222222222222 3444332 2455666666
Q ss_pred hHHHHHHHhc
Q 042834 79 SKEVVDLARN 88 (98)
Q Consensus 79 s~~vv~~l~~ 88 (98)
-..+.+.++.
T Consensus 158 ~~~l~~~l~~ 167 (202)
T TIGR02743 158 VNELEKRLDS 167 (202)
T ss_pred HHHHHHHhCC
Confidence 6666666654
No 91
>PRK13719 conjugal transfer transcriptional regulator TraJ; Provisional
Probab=32.37 E-value=35 Score=23.17 Aligned_cols=19 Identities=21% Similarity=0.177 Sum_probs=14.6
Q ss_pred EEEEEeCCCccEEEeeeee
Q 042834 25 LGVIIRDSRGKAVAATVQK 43 (98)
Q Consensus 25 ~G~vird~~G~~i~~~~~~ 43 (98)
+=+||||.+|.|+..-+..
T Consensus 30 ~P~CiR~~~g~fi~~N~~F 48 (217)
T PRK13719 30 YPACIRNESGKFIFYNTLF 48 (217)
T ss_pred CCeEEECCCCCeeecchHH
Confidence 3469999999999865543
No 92
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=31.15 E-value=1e+02 Score=21.39 Aligned_cols=49 Identities=12% Similarity=-0.018 Sum_probs=34.9
Q ss_pred EEeCCCccEEEeee--eeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEe
Q 042834 28 IIRDSRGKAVAATV--QKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVES 77 (98)
Q Consensus 28 vird~~G~~i~~~~--~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~es 77 (98)
+|-|-+|+|-.... .-+ ....-+.+=+.++..-++++.++|++.|.++.
T Consensus 24 iImDGNrRwAk~~~~~~gl-~~~~GH~~G~~~l~~v~~~c~~~GIk~lTvYa 74 (250)
T PRK14840 24 IIMDGNRRWYRKHEQFCQK-RAISGHYYGAKSLPQIVDTALHLGIEVLTLFA 74 (250)
T ss_pred EEcCCChHHHhhCCCccCC-CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 57788888743211 001 22345777888999999999999999998875
No 93
>PLN02530 histidine-tRNA ligase
Probab=31.01 E-value=2.3e+02 Score=21.36 Aligned_cols=63 Identities=13% Similarity=0.110 Sum_probs=36.0
Q ss_pred cceEEEEEeCCC---c---cEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCc--cEEEEechHHHHHHH
Q 042834 22 TAGLGVIIRDSR---G---KAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFL--PIIVESDSKEVVDLA 86 (98)
Q Consensus 22 ~~g~G~vird~~---G---~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~--~v~~esDs~~vv~~l 86 (98)
..-+|-|+|.+. | +|.......++.- ...||+..+..+.+....+|+. ++.++--...+++.+
T Consensus 167 ~~y~g~vfR~e~~q~gr~REf~Q~giEiiG~~--~~~aDaEvi~l~~~~l~~lgl~~~~~~i~i~~~~i~~~~ 237 (487)
T PLN02530 167 WFAIGQCWRYERMTRGRRREHYQWNMDIIGVP--GVEAEAELLAAIVTFFKRVGITSSDVGIKVSSRKVLQAV 237 (487)
T ss_pred EEEEcCEEcCcCCCCCCccceEEcCeeEeCCC--CcchhHHHHHHHHHHHHHcCCCCCceEEEEcCHHHHHHH
Confidence 455666777653 3 4444454445432 2234444444577777888986 687776555554443
No 94
>PF14094 DUF4272: Domain of unknown function (DUF4272)
Probab=30.92 E-value=30 Score=23.18 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHCCCccEEEEechHHHHHHHhcCC
Q 042834 55 AAAVNLGIQVAQNAKFLPIIVESDSKEVVDLARNRN 90 (98)
Q Consensus 55 ~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~~~~ 90 (98)
+++|.|||-+..++++-.-++ |+..++..+....
T Consensus 103 ~~~LlWALGlv~~L~~P~~~c--D~~~~~~~~~~~~ 136 (209)
T PF14094_consen 103 LWVLLWALGLVEELPFPDEIC--DVPLAIDLLPDLG 136 (209)
T ss_pred HHHHHHHhcCcccCCCCCccc--CHHHHHHHHHHcc
Confidence 345677777777788644444 9999999887753
No 95
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=30.73 E-value=35 Score=23.39 Aligned_cols=19 Identities=16% Similarity=0.420 Sum_probs=15.4
Q ss_pred HHHHHCCCccEEEEechHH
Q 042834 63 QVAQNAKFLPIIVESDSKE 81 (98)
Q Consensus 63 ~~a~~~g~~~v~~esDs~~ 81 (98)
+.++.....++.+|||+..
T Consensus 192 ~~~~~ipldriL~ETD~P~ 210 (258)
T PRK11449 192 DVIAKLPLASLLLETDAPD 210 (258)
T ss_pred HHHHhCChhhEEEecCCCC
Confidence 4455788999999999975
No 96
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=30.57 E-value=1.3e+02 Score=20.10 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=26.4
Q ss_pred eEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEE
Q 042834 24 GLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIV 75 (98)
Q Consensus 24 g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~ 75 (98)
-+=+.||-..|.|++ + ..|...++.-++.++++|..-++|
T Consensus 52 pv~vMIRpr~gdF~Y----------s--~~E~~~M~~dI~~~~~~GadG~Vf 91 (201)
T PF03932_consen 52 PVHVMIRPRGGDFVY----------S--DEEIEIMKEDIRMLRELGADGFVF 91 (201)
T ss_dssp EEEEE--SSSS-S---------------HHHHHHHHHHHHHHHHTT-SEEEE
T ss_pred ceEEEECCCCCCccC----------C--HHHHHHHHHHHHHHHHcCCCeeEE
Confidence 456788887776653 2 457778899999999999988877
No 97
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type. All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.
Probab=30.56 E-value=1.5e+02 Score=21.65 Aligned_cols=39 Identities=23% Similarity=0.187 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCccEEEEechHHHHHHH
Q 042834 48 GDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKEVVDLA 86 (98)
Q Consensus 48 ~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l 86 (98)
..|..+|..|+...+.+|...+.+=.+.-.-+..-++++
T Consensus 191 ~~p~~aE~~ai~~~~~la~~~~~~~~i~Hvs~~~~l~~i 229 (411)
T TIGR00857 191 ARPPEAEEVAVARLLELAKHAGCPVHICHISTKESLELI 229 (411)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHH
Confidence 357899999999999999988765444444454444444
No 98
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=30.37 E-value=98 Score=21.43 Aligned_cols=53 Identities=15% Similarity=0.092 Sum_probs=36.8
Q ss_pred ceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEech
Q 042834 23 AGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDS 79 (98)
Q Consensus 23 ~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs 79 (98)
..+| +|-|-+++|- ....++ ...-+.+=+..+..-++|+.++|++.|.++.=|
T Consensus 16 ~HVA-iImDGNrRwA--k~~g~~-~~~GH~~G~~~l~~i~~~c~~lgI~~lTvYaFS 68 (249)
T PRK14834 16 RHVA-IIMDGNGRWA--KARGLP-RAAGHRAGVEALRRVVRAAGELGIGYLTLFAFS 68 (249)
T ss_pred CeEE-EEecCchHHH--HHCCCc-hhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEe
Confidence 3444 4668777762 222222 234566778889999999999999999998744
No 99
>PRK13189 peroxiredoxin; Provisional
Probab=30.13 E-value=1.7e+02 Score=19.53 Aligned_cols=42 Identities=17% Similarity=0.099 Sum_probs=30.0
Q ss_pred EEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCC
Q 042834 26 GVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAK 69 (98)
Q Consensus 26 G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g 69 (98)
+.+|-|.+|.+.......... .....|++.++.+|+.....|
T Consensus 128 ~tfIID~~G~Ir~~~~~~~~~--gr~~~eilr~l~alq~~~~~~ 169 (222)
T PRK13189 128 AVFIIDPKGIIRAILYYPQEV--GRNMDEILRLVKALQTSDEKG 169 (222)
T ss_pred EEEEECCCCeEEEEEecCCCC--CCCHHHHHHHHHHhhhHhhcC
Confidence 578999999987665433322 234678999999999877664
No 100
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=30.13 E-value=50 Score=23.33 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=22.9
Q ss_pred EEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHC
Q 042834 28 IIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNA 68 (98)
Q Consensus 28 vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~ 68 (98)
.+|+.+|--+.+ +....+...-.++..|..+|+.+.+.
T Consensus 176 tvRe~dGLAlSS---RN~~Ls~~eR~~A~~l~~~L~~a~~~ 213 (280)
T PF02569_consen 176 TVREPDGLALSS---RNVYLSPEEREAAPVLYRALKAAKEA 213 (280)
T ss_dssp --B-TTS-B--G---GGGGS-HHHHHHTTHHHHHHHHHHHH
T ss_pred CeECCCCCceee---ccccCCHHHHHHHHHHHHHHHHHHHh
Confidence 589999975544 44455556777788899999988653
No 101
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=30.12 E-value=1e+02 Score=21.74 Aligned_cols=52 Identities=12% Similarity=-0.026 Sum_probs=35.5
Q ss_pred eEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEech
Q 042834 24 GLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDS 79 (98)
Q Consensus 24 g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs 79 (98)
.+| +|-|.+++| +....++. ..-+.+=+-.+..-++|+.++|++.|.++.=|
T Consensus 44 HVA-iImDGNrRw--Ak~~g~~~-~~GH~~G~~~l~~i~~~c~~lGIk~lTvYaFS 95 (275)
T PRK14835 44 HLG-LILDGNRRF--ARALGLQR-EMGHEFGVQKAYEVLEWCLELGIPTVTIWVFS 95 (275)
T ss_pred EEE-EEecCchHH--HHHCCCCH-HHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEE
Confidence 444 466777776 22222222 24466678889999999999999999987544
No 102
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=29.94 E-value=97 Score=21.35 Aligned_cols=48 Identities=17% Similarity=0.109 Sum_probs=34.7
Q ss_pred EEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEec
Q 042834 28 IIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESD 78 (98)
Q Consensus 28 vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esD 78 (98)
+|-|-+++|- ....++ ...-+.+=+-.+..-++|+.++|++.|.++.=
T Consensus 14 iImDGNrRwA--k~~gl~-~~~GH~~G~~~l~~i~~~c~~lgI~~vTvYaF 61 (241)
T PRK14842 14 VIMDGNGRWA--ESQGKK-RSEGHREGANAIDRLMDASLEYGLKNISLYAF 61 (241)
T ss_pred EEcCCCHHHH--HHCCCC-hhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEe
Confidence 4678777763 222232 23457777888999999999999999998753
No 103
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=29.67 E-value=85 Score=22.27 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=27.1
Q ss_pred EEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHC
Q 042834 28 IIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNA 68 (98)
Q Consensus 28 vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~ 68 (98)
.+|.++|.-+.+ +....+.-.-.++.+|..+|+.+.+.
T Consensus 177 tVRe~DGLA~SS---RN~YLs~eeR~~A~~L~~~L~~~~~~ 214 (285)
T COG0414 177 TVREEDGLALSS---RNVYLSAEERKAAPALYRALTAAAEL 214 (285)
T ss_pred eeEcCCccchhh---ccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 689999965444 44455556677889999999877553
No 104
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=29.66 E-value=99 Score=21.74 Aligned_cols=41 Identities=17% Similarity=0.163 Sum_probs=26.1
Q ss_pred CCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEe
Q 042834 32 SRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVES 77 (98)
Q Consensus 32 ~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~es 77 (98)
+.|-|+.....+ ..+=.=+.+...++.++...|+..|++||
T Consensus 89 d~~vfIRS~atR-----G~lGGls~~t~~~v~ll~aaG~D~IiiET 129 (266)
T PF03308_consen 89 DPGVFIRSMATR-----GSLGGLSRATRDAVRLLDAAGFDVIIIET 129 (266)
T ss_dssp STTEEEEEE--------SSHHHHHHHHHHHHHHHHHTT-SEEEEEE
T ss_pred CCCEEEeecCcC-----CCCCCccHhHHHHHHHHHHcCCCEEEEeC
Confidence 455565544332 22333356778889999999999999997
No 105
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=29.30 E-value=93 Score=21.50 Aligned_cols=53 Identities=9% Similarity=-0.037 Sum_probs=37.9
Q ss_pred ceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEech
Q 042834 23 AGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDS 79 (98)
Q Consensus 23 ~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs 79 (98)
..+| +|-|-+++|-. ...++. ..-+.+=+.++..-++|+.++|+..|.++.=|
T Consensus 22 ~HVa-iImDGNrRwA~--~~gl~~-~~GH~~G~~~l~~i~~~c~~~GI~~vT~yaFS 74 (249)
T PRK14831 22 KHVA-VIMDGNGRWAK--RRGLPR-IMGHRRGVDALKDLLRCCKDWGIGALTAYAFS 74 (249)
T ss_pred CeEE-EecCCcHHHHH--HCCCch-hhhHHHHHHHHHHHHHHHHHcCCCEEEEeecc
Confidence 3444 47788887732 222332 35677888899999999999999999988644
No 106
>KOG4609 consensus Predicted phosphoglycerate mutase [General function prediction only]
Probab=29.27 E-value=1.1e+02 Score=21.28 Aligned_cols=34 Identities=18% Similarity=0.555 Sum_probs=24.6
Q ss_pred CCCCCceEEEEecceeecCCCcceEEEEEeCCCccEEEeeee
Q 042834 1 TSPPNGWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQ 42 (98)
Q Consensus 1 ~~P~~g~~k~n~D~s~~~~~~~~g~G~vird~~G~~i~~~~~ 42 (98)
+-||.||+.+|.. .+.+-|+.....|.+....-+
T Consensus 238 q~PpegWlR~nln--------h~SiTWlti~PsG~vsvr~lG 271 (284)
T KOG4609|consen 238 QFPPEGWLRMNLN--------HCSITWLTISPSGHVSVRSLG 271 (284)
T ss_pred cCCcchhheeccc--------CcceEEEEEccCCcEEEEecc
Confidence 3589999999875 555667777788887664433
No 107
>COG3341 Predicted double-stranded RNA/RNA-DNA hybrid binding protein [General function prediction only]
Probab=29.16 E-value=1.9e+02 Score=19.80 Aligned_cols=83 Identities=6% Similarity=-0.053 Sum_probs=54.8
Q ss_pred ceEEEEecceeecCCCcceEEEEEeCC--CccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEE-E----ec
Q 042834 6 GWFKVNVDAAIKLSDQTAGLGVIIRDS--RGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIV-E----SD 78 (98)
Q Consensus 6 g~~k~n~D~s~~~~~~~~g~G~vird~--~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~-e----sD 78 (98)
..+.-..+|.+...++..++-...+.. ++.++....... ..++..+|.+|.+.+|..+..++.++..+ . .|
T Consensus 64 e~~i~~~~G~y~~~p~t~~~k~yr~k~~~~~~~lt~~~~~~--~~~n~s~d~la~ly~~~~~~~~~nrk~~i~y~~~~~d 141 (225)
T COG3341 64 EYIISWAKGDYDAKPGTQEFKEYRGKCTIEYSWLTESSEFS--IKSNDSGDVLAKLYGLRYEVPLDNRKSVINYLTPGND 141 (225)
T ss_pred hccceeccCCccccCCCcceeEEeccccccceeeeeecccc--cccCchHHHHHHhccccccccccCccceeeccCCcch
Confidence 334445566666655555554444422 346666555432 34678999999999999999888877766 5 58
Q ss_pred hHHHHHHHhcCC
Q 042834 79 SKEVVDLARNRN 90 (98)
Q Consensus 79 s~~vv~~l~~~~ 90 (98)
|+.-++.+....
T Consensus 142 s~a~~k~~k~~~ 153 (225)
T COG3341 142 SWAYFKYVKDKC 153 (225)
T ss_pred hHHHHHHHhhhh
Confidence 888887776544
No 108
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric. This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.
Probab=28.95 E-value=1.4e+02 Score=21.15 Aligned_cols=52 Identities=15% Similarity=-0.017 Sum_probs=35.2
Q ss_pred CcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCcc
Q 042834 21 QTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLP 72 (98)
Q Consensus 21 ~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~ 72 (98)
...-+|..+++.+|.+..+..--.......+-||-.||..++..--..++..
T Consensus 193 S~f~vgaal~~~~g~i~~G~nvENAay~~slcaer~Ai~~~v~~g~g~~~~~ 244 (283)
T TIGR01355 193 SKSPSGVALLDKEGKVYRGWYIESAAFNPSLGPVQAALVDFMANGGGKGFED 244 (283)
T ss_pred cCCceeEEEEeCCCCEEEEEEeecCCCCCcccHHHHHHHHHHHhCCCCChhh
Confidence 4556788899999998877665444555667889888887765422334433
No 109
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=28.36 E-value=1.1e+02 Score=21.16 Aligned_cols=47 Identities=17% Similarity=0.071 Sum_probs=34.7
Q ss_pred EEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEe
Q 042834 28 IIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVES 77 (98)
Q Consensus 28 vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~es 77 (98)
+|-|-+++|-. ....+ ...-+.+=+..+..-++|+.++|++.|.++.
T Consensus 16 iImDGNrRwA~--~~gl~-~~~GH~~G~~~l~~i~~~~~~~gI~~lT~Ya 62 (242)
T PRK14838 16 IIMDGNGRWAK--ERGKE-RSFGHQAGAETVHIITEEAARLGVKFLTLYT 62 (242)
T ss_pred EeccCCHHHHH--HCCCC-HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 47787887733 22232 2356777788899999999999999998875
No 110
>PRK07627 dihydroorotase; Provisional
Probab=28.19 E-value=1.6e+02 Score=21.78 Aligned_cols=38 Identities=16% Similarity=0.043 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCccEEEEechHHHHHHHh
Q 042834 50 VAYMEAAAVNLGIQVAQNAKFLPIIVESDSKEVVDLAR 87 (98)
Q Consensus 50 ~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~ 87 (98)
|.++|..|+...+.+|...+.+=-++-.-+..-++++.
T Consensus 207 P~~aE~~av~r~~~la~~~~~~~hi~HvSs~~~~~~i~ 244 (425)
T PRK07627 207 PVAAETIALHTIFELMRVTGARVHLARLSSAAGVALVR 244 (425)
T ss_pred CHHHHHHHHHHHHHHHHHHCCcEEEEeCCCHHHHHHHH
Confidence 78999999999999999988755555555666666654
No 111
>PRK07369 dihydroorotase; Provisional
Probab=27.76 E-value=1.6e+02 Score=21.69 Aligned_cols=39 Identities=15% Similarity=0.122 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCccEEEEechHHHHHHHh
Q 042834 49 DVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKEVVDLAR 87 (98)
Q Consensus 49 ~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~ 87 (98)
.|..+|..|+...+.+|...|.+=.+.-.-+..-++.+.
T Consensus 207 ~p~~aE~~av~r~~~la~~~~~~~hi~HvSs~~~~~~i~ 245 (418)
T PRK07369 207 DPASAETTALAALLELVAAIGTPVHLMRISTARSVELIA 245 (418)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCcEEEEeCCCHHHHHHHH
Confidence 478999999999999999998765555555656566554
No 112
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=27.23 E-value=87 Score=18.06 Aligned_cols=18 Identities=17% Similarity=0.041 Sum_probs=13.7
Q ss_pred cceEEEEEeCCCccEEEe
Q 042834 22 TAGLGVIIRDSRGKAVAA 39 (98)
Q Consensus 22 ~~g~G~vird~~G~~i~~ 39 (98)
..+.++.++|.+|..+.-
T Consensus 104 ~~~~~~~~~DPdG~~ie~ 121 (124)
T cd09012 104 GFMYGRSFADLDGHLWEV 121 (124)
T ss_pred CceEEEEEECCCCCEEEE
Confidence 345678899999998753
No 113
>PRK04250 dihydroorotase; Provisional
Probab=27.15 E-value=1.7e+02 Score=21.42 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCccEEEEechHHHHHHHhcC
Q 042834 48 GDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKEVVDLARNR 89 (98)
Q Consensus 48 ~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~~~ 89 (98)
..|.++|..|+...+.+|...|.+=-+.-.-+..-++++...
T Consensus 176 ~~p~~aE~~av~r~~~la~~~~~~lhi~HvSt~~~~~~i~~~ 217 (398)
T PRK04250 176 ERPPEAEVVAIERALEAGKKLKKPLHICHISTKDGLKLILKS 217 (398)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHc
Confidence 347889999999999999998886556666666777777653
No 114
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=27.02 E-value=86 Score=17.64 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=13.0
Q ss_pred ceEEEEEeCCCccEEEe
Q 042834 23 AGLGVIIRDSRGKAVAA 39 (98)
Q Consensus 23 ~g~G~vird~~G~~i~~ 39 (98)
.|..++++|++|..+.-
T Consensus 96 ~g~~~~~~DPdGn~ie~ 112 (114)
T cd07261 96 FGYTFVALDPDGHRLRV 112 (114)
T ss_pred CccEEEEECCCCCEEEe
Confidence 45678899999987653
No 115
>PF10114 PocR: Sensory domain found in PocR; InterPro: IPR018771 This entry is thought to act as a sensory domain in histidine kinases catalysing the reaction: ATP + protein L-histidine = ADP + protein N- phospho-L-histidine.
Probab=26.95 E-value=46 Score=20.88 Aligned_cols=27 Identities=22% Similarity=0.474 Sum_probs=20.1
Q ss_pred CcceEEEEEeCCCccEEEeeeeeeccc
Q 042834 21 QTAGLGVIIRDSRGKAVAATVQKVSFR 47 (98)
Q Consensus 21 ~~~g~G~vird~~G~~i~~~~~~~~~~ 47 (98)
...|++++|.|.+|+.+...+.+-+.|
T Consensus 19 ~~tgl~~~i~d~~G~~l~~~~~~~~fC 45 (173)
T PF10114_consen 19 KATGLSIVIVDPDGNPLTQPSNFCPFC 45 (173)
T ss_pred HHHCCcEEEEeCCCCEEeeCCCchhhh
Confidence 357899999999999996655444333
No 116
>PF10298 WhiA_N: WhiA N-terminal LAGLIDADG-like domain; InterPro: IPR018478 This entry represents the N-terminal domain of sporulation factor WhiA []. This domain is related to the LAGLIDADG homing endonuclease domain while the C-terminal domain of WhiA is predicted to be a DNA binding helix-turn-helix domain [].; PDB: 3HYI_A 3HYJ_D.
Probab=26.78 E-value=88 Score=17.52 Aligned_cols=34 Identities=12% Similarity=0.074 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHC----CCccEEEEechHHHHHHHh
Q 042834 51 AYMEAAAVNLGIQVAQNA----KFLPIIVESDSKEVVDLAR 87 (98)
Q Consensus 51 ~~aE~~Al~~aL~~a~~~----g~~~v~~esDs~~vv~~l~ 87 (98)
..||+.|++. +.-.+ |--.+.|++++..+...+.
T Consensus 4 ~~AELaAlir---~~G~l~~~~~~~~l~~~ten~~vARri~ 41 (86)
T PF10298_consen 4 RIAELAALIR---FSGSLSISNGRISLEISTENAAVARRIY 41 (86)
T ss_dssp HHHHHHHHHH---HHEEECTTTTEEEE--EES-HHHHHHHH
T ss_pred HHHHHHHHHH---hCCEEEEECCEEEEEEEeCCHHHHHHHH
Confidence 4578777643 33222 3347888888888776553
No 117
>PF02499 DNA_pack_C: Probable DNA packing protein, C-terminus; InterPro: IPR003498 This family includes proteins that are probably involved in DNA packing in Herpesviridae. This domain is found at the C terminus of the protein.; GO: 0006323 DNA packaging; PDB: 3N4Q_C 3N4P_D 2KN8_A.
Probab=26.76 E-value=2.6e+02 Score=20.56 Aligned_cols=75 Identities=17% Similarity=0.121 Sum_probs=36.4
Q ss_pred CCceEEEEecceeecCCC--cceEEEEEeCCCccEEEeeeee----ecccCCHHHHHHHHH-HHHHHHHHHCCC--ccEE
Q 042834 4 PNGWFKVNVDAAIKLSDQ--TAGLGVIIRDSRGKAVAATVQK----VSFRGDVAYMEAAAV-NLGIQVAQNAKF--LPII 74 (98)
Q Consensus 4 ~~g~~k~n~D~s~~~~~~--~~g~G~vird~~G~~i~~~~~~----~~~~~~~~~aE~~Al-~~aL~~a~~~g~--~~v~ 74 (98)
-...+-+|+|=+|-.+.. ..|++.|.|...-.++.+--.. +.+.+.-..|+..+- +.++..+.- -+ -+|.
T Consensus 131 l~~~LyVYvDPAfT~Nt~ASGTGIa~v~~~~~~~II~GlEHffL~~Ltg~s~~~ia~ca~~~i~~v~~LHP-~f~~V~va 209 (354)
T PF02499_consen 131 LSSTLYVYVDPAFTNNTRASGTGIAAVGRYRPKYIILGLEHFFLRALTGSSADAIARCAAQCIASVLALHP-FFREVRVA 209 (354)
T ss_dssp B-SEEEEEEE----SSS----EEEEEEEEETTEEEEEEEEEE--S-TTSHHHHHHHHHHHHHHHHHHHH-T-T--EEEEE
T ss_pred cCCeEEEEECCCCcCCCcccceeEEEEEEcCCCEEEEecceeEHHhhhchHHHHHHHHHHHHHHHHHHhCC-CcceEEEE
Confidence 356789999999988764 3677788888554455543332 222223344443332 223333322 44 5788
Q ss_pred EEech
Q 042834 75 VESDS 79 (98)
Q Consensus 75 ~esDs 79 (98)
+|+.|
T Consensus 210 VEGNS 214 (354)
T PF02499_consen 210 VEGNS 214 (354)
T ss_dssp EB-SS
T ss_pred EccCC
Confidence 89876
No 118
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=26.21 E-value=1.7e+02 Score=21.03 Aligned_cols=39 Identities=18% Similarity=0.112 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCccEEEEechHHHHHHHh
Q 042834 49 DVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKEVVDLAR 87 (98)
Q Consensus 49 ~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~ 87 (98)
-|..+|..|+...+.++...|.+-.+.-.=+..-++.+.
T Consensus 151 ~P~~aE~~av~r~~~la~~~~~~~hi~Hvs~~~~~~~i~ 189 (361)
T cd01318 151 RDAEAAAVATARALKLARRHGARLHICHVSTPEELKLIK 189 (361)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHH
Confidence 478999999999999999888654444444444555554
No 119
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=26.17 E-value=81 Score=22.45 Aligned_cols=26 Identities=12% Similarity=0.207 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHCCCccEEEEe
Q 042834 52 YMEAAAVNLGIQVAQNAKFLPIIVES 77 (98)
Q Consensus 52 ~aE~~Al~~aL~~a~~~g~~~v~~es 77 (98)
.-|+++..+-|++.+.+.+..|+|-|
T Consensus 125 ideamsfae~~klvk~~~F~~vVFDT 150 (323)
T KOG2825|consen 125 IDEAMSFAEVMKLVKGMNFDVVVFDT 150 (323)
T ss_pred hhHHHhHHHHHHHhhccccceEEecc
Confidence 34999999999999999999999876
No 120
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=26.06 E-value=2.8e+02 Score=20.56 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=36.3
Q ss_pred CcceEEEEEeCCC---c---cEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEech
Q 042834 21 QTAGLGVIIRDSR---G---KAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDS 79 (98)
Q Consensus 21 ~~~g~G~vird~~---G---~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs 79 (98)
+..-+|-|+|.+. | +|.......+.. +...|++..+..+.+....+|+.++.++--.
T Consensus 104 R~~y~g~vfR~e~~q~GR~Ref~Q~g~EiiG~--~~~~aD~Evi~l~~~~l~~lGl~~~~i~l~~ 166 (430)
T CHL00201 104 RLWYSGPMFRYERPQSGRQRQFHQLGIEFIGS--IDARADTEVIHLAMQIFNELQVKNLILDINS 166 (430)
T ss_pred EEEEEcceecCCCCcCCccceeEEeceEEECC--CChhhHHHHHHHHHHHHHHcCCCceEEEECC
Confidence 3455677777654 3 344455554443 3345666667778888899999887776553
No 121
>TIGR00227 ribD_Cterm riboflavin-specific deaminase C-terminal domain. Eubacterial riboflavin-specific deaminases have a zinc-binding domain recognized by the dCMP_cyt_deam model toward the N-terminus and this domain toward the C-terminus. Yeast HTP reductase, a riboflavin-biosynthetic enzyme, and several archaeal proteins believed related to riboflavin biosynthesis consist only of this domain and lack the dCMP_cyt_deam domain.
Probab=25.80 E-value=2e+02 Score=18.76 Aligned_cols=36 Identities=8% Similarity=0.027 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHCCCccEEEEechHHHHHHHhcCCCC
Q 042834 57 AVNLGIQVAQNAKFLPIIVESDSKEVVDLARNRNCL 92 (98)
Q Consensus 57 Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~~~~~~ 92 (98)
-+..+|+.+.+.|.++|.+|+-...+-..++..-.|
T Consensus 129 dl~~~l~~L~~~g~~~llveGG~~L~~~fl~~~LvD 164 (216)
T TIGR00227 129 DLKKLMEILYEEGINSVMVEGGGTLNGSLLKEGLVD 164 (216)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCHHHHHHHHHCCCCC
Confidence 355677777888999999999988887777765444
No 122
>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]
Probab=25.09 E-value=1.9e+02 Score=18.94 Aligned_cols=27 Identities=15% Similarity=0.127 Sum_probs=21.3
Q ss_pred CHHHHHHH--HHHHHHHHHHHCCCccEEE
Q 042834 49 DVAYMEAA--AVNLGIQVAQNAKFLPIIV 75 (98)
Q Consensus 49 ~~~~aE~~--Al~~aL~~a~~~g~~~v~~ 75 (98)
+..++|.+ |.+.+|+.+.+.|++.|-|
T Consensus 92 ~~~~~e~l~~a~~~~l~~a~~~g~~SiAf 120 (179)
T COG2110 92 SKDEAELLAAAYRAALRLAKEAGVRSVAF 120 (179)
T ss_pred ChhHHHHHHHHHHHHHHHHHHcCCceeec
Confidence 66677754 4788999999999887765
No 123
>PRK08417 dihydroorotase; Provisional
Probab=24.80 E-value=2e+02 Score=20.75 Aligned_cols=39 Identities=13% Similarity=-0.051 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCccEEEEechHHHHHHHh
Q 042834 49 DVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKEVVDLAR 87 (98)
Q Consensus 49 ~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~ 87 (98)
-|..+|..|+...+++|...|.+=-+.-.-+..-++++.
T Consensus 175 rp~~aE~~~v~~~~~la~~~~~~lhi~hvS~~~~~~~i~ 213 (386)
T PRK08417 175 IPSIAETKEVAKMKELAKFYKNKVLFDTLALPRSLELLD 213 (386)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHH
Confidence 478899999999999999988754444444555555553
No 124
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=24.80 E-value=28 Score=20.96 Aligned_cols=38 Identities=13% Similarity=0.111 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCccE-EEEechHHHHHHHhc
Q 042834 49 DVAYMEAAAVNLGIQVAQNAKFLPI-IVESDSKEVVDLARN 88 (98)
Q Consensus 49 ~~~~aE~~Al~~aL~~a~~~g~~~v-~~esDs~~vv~~l~~ 88 (98)
-..++|-+|+..+|.-. .=+.+. .+..||...++.+..
T Consensus 60 ~~~HSEKlAiafgli~~--~vvkn~~RvC~DCH~~~K~iS~ 98 (116)
T PF14432_consen 60 LCYHSEKLAIAFGLINT--RVVKNLKRVCGDCHSFIKFISK 98 (116)
T ss_pred hhccHHHHHHHhcccce--eEEecCCccchHHHHHHHHHHH
Confidence 35578888888877654 233455 788899999988875
No 125
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=24.76 E-value=1.3e+02 Score=20.77 Aligned_cols=55 Identities=15% Similarity=0.046 Sum_probs=36.4
Q ss_pred CcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEech
Q 042834 21 QTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDS 79 (98)
Q Consensus 21 ~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs 79 (98)
-...+|+ |-|.+++| +....++ ...-+.+=+-.+..-++|+.++|++.|.++.=|
T Consensus 22 ~P~HVAi-ImDGNrRw--Ak~~gl~-~~~Gh~~G~~~l~~~l~~c~~~GI~~vTvYaFS 76 (251)
T PRK14830 22 IPKHIAI-IMDGNGRW--AKKRMLP-RIAGHKAGMDTVKKITKAASELGVKVLTLYAFS 76 (251)
T ss_pred CCCeEEE-EecCchHH--HHHCCCc-hhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEe
Confidence 3445554 55766665 2222222 224566667789999999999999999998744
No 126
>PF05854 MC1: Non-histone chromosomal protein MC1; InterPro: IPR008674 This family consists of archaeal chromosomal protein MC1 sequences which protect DNA against thermal denaturation [].; GO: 0042262 DNA protection; PDB: 1T23_A 2KHL_A.
Probab=24.76 E-value=1.1e+02 Score=17.94 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=16.3
Q ss_pred EEEeCCCccEEEeeeeeecc
Q 042834 27 VIIRDSRGKAVAATVQKVSF 46 (98)
Q Consensus 27 ~vird~~G~~i~~~~~~~~~ 46 (98)
+++||.+|.-+..+++..+.
T Consensus 6 F~Lr~~~G~E~gvFtG~~Pr 25 (93)
T PF05854_consen 6 FALRDEDGNEIGVFTGAQPR 25 (93)
T ss_dssp EEEETTTTSEEEEEEESSCC
T ss_pred EEEEcCCCccccEEeCCCHH
Confidence 68999999998888876543
No 127
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=24.47 E-value=89 Score=21.67 Aligned_cols=50 Identities=14% Similarity=0.058 Sum_probs=35.1
Q ss_pred eEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEe
Q 042834 24 GLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVES 77 (98)
Q Consensus 24 g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~es 77 (98)
.+| +|-|-+|+|-. ...++. ..-+.+=+-++.+-++|+.++|++.|.++.
T Consensus 17 HVA-iImDGNrRwA~--~~gl~~-~~GH~~G~~~~~~iv~~c~~~gI~~lTvYa 66 (253)
T PRK14836 17 HIA-IIMDGNGRWAK--RRGKPR-VEGHRAGVRAVRRTIEFCLEKGIEMLTLFA 66 (253)
T ss_pred eEE-EecCCcHHHHH--HCCCch-hhhHHHHHHHHHHHHHHHHHcCCCEEehhH
Confidence 344 46677777632 222322 355777788999999999999999998875
No 128
>PF11204 DUF2985: Protein of unknown function (DUF2985); InterPro: IPR021369 This eukaryotic family of proteins has no known function.
Probab=24.39 E-value=91 Score=17.84 Aligned_cols=21 Identities=29% Similarity=0.167 Sum_probs=16.7
Q ss_pred HCCCccEEEEechHHHHHHHh
Q 042834 67 NAKFLPIIVESDSKEVVDLAR 87 (98)
Q Consensus 67 ~~g~~~v~~esDs~~vv~~l~ 87 (98)
....++..+|-|||.+...+.
T Consensus 40 ~~s~r~~WiEi~sQILnALF~ 60 (81)
T PF11204_consen 40 NKSPRDIWIEIDSQILNALFT 60 (81)
T ss_pred CCccceEEEEehhHHHHHHHH
Confidence 345689999999999877654
No 129
>PRK05625 5-amino-6-(5-phosphoribosylamino)uracil reductase; Validated
Probab=24.29 E-value=2.2e+02 Score=18.71 Aligned_cols=36 Identities=6% Similarity=-0.037 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHCCCccEEEEechHHHHHHHhcCCCC
Q 042834 57 AVNLGIQVAQNAKFLPIIVESDSKEVVDLARNRNCL 92 (98)
Q Consensus 57 Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~~~~~~ 92 (98)
-+...|+.+.+.|..+|.+|+-...+-..++.+-.|
T Consensus 128 dl~~~l~~L~~~g~~~vlveGG~~l~~~fl~~~LvD 163 (217)
T PRK05625 128 DLPDLLEDLYERGIKRLMVEGGGTLIWSMFKEGLVD 163 (217)
T ss_pred CHHHHHHHHHHCCCCEEEEecCHHHHHHHHHCCCCc
Confidence 345667777889999999999988888777765544
No 130
>PF15103 G0-G1_switch_2: G0/G1 switch protein 2
Probab=24.25 E-value=47 Score=19.84 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=15.7
Q ss_pred CCCCCceEEEEecceeec
Q 042834 1 TSPPNGWFKVNVDAAIKL 18 (98)
Q Consensus 1 ~~P~~g~~k~n~D~s~~~ 18 (98)
++|..+.+|+|+=||...
T Consensus 17 QkPsrkmvKlYvLGSvLA 34 (102)
T PF15103_consen 17 QKPSRKMVKLYVLGSVLA 34 (102)
T ss_pred cCCCCCeEeeehhhhHHH
Confidence 589999999999998854
No 131
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=24.17 E-value=2.9e+02 Score=20.21 Aligned_cols=64 Identities=6% Similarity=0.001 Sum_probs=41.9
Q ss_pred cceEEEEEeCCC---c---cEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEechHHHHHHHh
Q 042834 22 TAGLGVIIRDSR---G---KAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKEVVDLAR 87 (98)
Q Consensus 22 ~~g~G~vird~~---G---~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~ 87 (98)
..-+|-|+|... | ++...+...++. +...||+..+..+.+....+|+.++.++--...+++.+-
T Consensus 104 ~~Y~g~VfR~~~~~~gr~rEf~Q~GvEiiG~--~~~~aDaEvi~l~~e~l~~lgi~~~~l~ig~~~i~~~il 173 (392)
T PRK12421 104 LCYAGSVLHTLPQGLFGSRTPLQLGAELYGH--AGIEADLEIIRLMLGLLRNAGVPALHLDLGHVGIFRRLA 173 (392)
T ss_pred EEEeeeEEEcCCCcCCCcCccceeceEEeCC--CCchhHHHHHHHHHHHHHHcCCCCeEEEeCCHHHHHHHH
Confidence 445677777532 2 244455554543 334577777777888889999998988877766666554
No 132
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=24.15 E-value=44 Score=23.15 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=17.5
Q ss_pred HHHHHHCCCccEEEEechHHH
Q 042834 62 IQVAQNAKFLPIIVESDSKEV 82 (98)
Q Consensus 62 L~~a~~~g~~~v~~esDs~~v 82 (98)
-+.++.+-..++.+||||..+
T Consensus 189 ~ev~~~iPldrLL~ETDsPyl 209 (256)
T COG0084 189 REVARELPLDRLLLETDAPYL 209 (256)
T ss_pred HHHHHhCCHhHeEeccCCCCC
Confidence 456678889999999999876
No 133
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=24.06 E-value=3.8e+02 Score=21.86 Aligned_cols=76 Identities=16% Similarity=0.091 Sum_probs=42.9
Q ss_pred CceEEEEecceeecCCCc--ceEEEEEeCCCccEEEeeeee----ecccCCHHHHHHHH-HHHHHHHHHH--CCCccEEE
Q 042834 5 NGWFKVNVDAAIKLSDQT--AGLGVIIRDSRGKAVAATVQK----VSFRGDVAYMEAAA-VNLGIQVAQN--AKFLPIIV 75 (98)
Q Consensus 5 ~g~~k~n~D~s~~~~~~~--~g~G~vird~~G~~i~~~~~~----~~~~~~~~~aE~~A-l~~aL~~a~~--~g~~~v~~ 75 (98)
...+-+++|=+|-.+.+. .|++.|.|..+-.++.+.-.+ +.+.+....||..+ ++.++-.++- ..--+|.+
T Consensus 505 ~~~LyVYvDPAft~N~~ASGTGia~vg~~~~~~ii~GlEHffL~~Ltg~s~~~Ia~Ca~~~i~~v~~lHp~~~~~v~vav 584 (738)
T PHA03368 505 SPDLYVYVDPAFTANTRASGTGIAVVGRYRDDWIVFGLEHFFLRALTGSSADEIARCVAQCLAQVCALHPGRFRSVRVAV 584 (738)
T ss_pred CceEEEEECcccccCCccccccEEEEEEeCCCEEEEecHHHHHHHhcCchHHHHHHHHHHHHHHHHHhCcccccEEEEEE
Confidence 456789999999887644 556666666553344433222 23334445556443 3444433333 23357888
Q ss_pred EechH
Q 042834 76 ESDSK 80 (98)
Q Consensus 76 esDs~ 80 (98)
|+.|.
T Consensus 585 EGNSs 589 (738)
T PHA03368 585 EGNSS 589 (738)
T ss_pred ecCcc
Confidence 98553
No 134
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=23.85 E-value=3e+02 Score=20.22 Aligned_cols=62 Identities=11% Similarity=0.295 Sum_probs=36.5
Q ss_pred cceEEEEEeCCC------ccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEechHHHHHHH
Q 042834 22 TAGLGVIIRDSR------GKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKEVVDLA 86 (98)
Q Consensus 22 ~~g~G~vird~~------G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l 86 (98)
..-+|-|+|... .++...+...++. +...||+..+..+++....+|+ ++.++--...+++.+
T Consensus 102 ~~y~g~vfR~~~~~~gr~rE~~Q~g~EiiG~--~~~~adaEvi~la~~~l~~lg~-~~~i~l~~~~l~~~i 169 (423)
T PRK12420 102 RYEIGKVFRDGPIKQGRFREFIQCDVDIVGV--ESVMAEAELMSMAFELFRRLNL-EVTIQYNNRKLLNGI 169 (423)
T ss_pred EEEEcceECCCCCCCCccceeEECCeeeECC--CCCcccHHHHHHHHHHHHHCCC-CEEEEEcCHHHHHHH
Confidence 445666777643 2455555555553 3345566666667788888998 566655444444443
No 135
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=23.29 E-value=2.2e+02 Score=18.44 Aligned_cols=42 Identities=19% Similarity=0.186 Sum_probs=30.1
Q ss_pred EEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCC
Q 042834 26 GVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAK 69 (98)
Q Consensus 26 G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g 69 (98)
+.+|-|.+|.+......... .....-|++..+.+++.....+
T Consensus 129 ~~fiID~~G~i~~~~~~~~~--~~r~~~e~l~~l~a~~~~~~~~ 170 (199)
T PTZ00253 129 GLFIIDPKGMLRQITVNDMP--VGRNVEEVLRLLEAFQFVEKHG 170 (199)
T ss_pred EEEEECCCCEEEEEEecCCC--CCCCHHHHHHHHHhhhhHHhcC
Confidence 77889999998876554333 2345678888888988876543
No 136
>PRK10057 rpsV 30S ribosomal subunit S22; Reviewed
Probab=23.18 E-value=17 Score=18.01 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=13.4
Q ss_pred CccEEEEechHHHHHH
Q 042834 70 FLPIIVESDSKEVVDL 85 (98)
Q Consensus 70 ~~~v~~esDs~~vv~~ 85 (98)
-++|++|.|...+|+-
T Consensus 20 qrKvV~Egd~~t~vn~ 35 (44)
T PRK10057 20 QRKVVTEGDKSSVVNN 35 (44)
T ss_pred ceeEEeeCCcceeEec
Confidence 4789999999988873
No 137
>PF06754 PhnG: Phosphonate metabolism protein PhnG; InterPro: IPR009609 This family consists of several bacterial phosphonate metabolism protein PhnG sequences. In Escherichia coli, the phn operon encodes proteins responsible for the uptake and breakdown of phosphonates. The exact function of PhnG is unknown, however it is thought likely that along with six other proteins PhnG makes up the the C-P (carbon-phosphorus) lyase [].; GO: 0015716 phosphonate transport, 0019634 phosphonate metabolic process
Probab=23.13 E-value=2.1e+02 Score=18.09 Aligned_cols=35 Identities=23% Similarity=0.022 Sum_probs=22.6
Q ss_pred EEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHH
Q 042834 26 GVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQV 64 (98)
Q Consensus 26 G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~ 64 (98)
-+.+|-.+|.. +..++.+ .+...||+.|++.|+-.
T Consensus 66 r~~V~l~~g~~---G~~~v~G-~d~~~A~~~Av~DAllq 100 (146)
T PF06754_consen 66 RCAVRLEDGTV---GYGYVLG-RDKRHAELAAVIDALLQ 100 (146)
T ss_pred EEEEEeCCCCE---EEEEEcC-CCHHHHHHHHHHHHHhC
Confidence 45566666653 2222333 38899999999998854
No 138
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=23.11 E-value=2.5e+02 Score=18.99 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=27.1
Q ss_pred CCCceEEEEecceeecCCCcceEEEEEeCCCccEEEeeee
Q 042834 3 PPNGWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQ 42 (98)
Q Consensus 3 P~~g~~k~n~D~s~~~~~~~~g~G~vird~~G~~i~~~~~ 42 (98)
|..+|+.+-+......+.....-| -+.|.+|..+.....
T Consensus 228 ~~~~W~l~~~~s~~~~~Grg~~~~-~l~d~~G~lvAs~~Q 266 (271)
T TIGR00189 228 RADDWLLYKCSSPSASGSRGLVEG-KIFTRDGVLIASTVQ 266 (271)
T ss_pred CCCeeEEEEEEeccccCCceEEEE-EEECCCCCEEEEEEe
Confidence 567898888877766554444444 566999999887653
No 139
>PF07484 Collar: Phage Tail Collar Domain; InterPro: IPR011083 This entry is represented by a domain found in Bacteriophage T4, Gp12. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This region is occasionally found in conjunction with IPR005003 from INTERPRO. Most of the proteins appear to be phage tail proteins; however some appear to be involved in other processes. For instance the RhiB protein (Q03314 from SWISSPROT) from Rhizobium leguminosarum may be involved in plant-microbe interactions []. A related protein, microcystin related protein (MrpB, Q9L3N1 from SWISSPROT) is involved in the pathogenicity of Microcystis aeruginosa. The finding of this family in a structural component of the phage tail fibre baseplate (P10930 from SWISSPROT) suggests that its function is structural rather than enzymatic. Structural studies show this region consists of a helix and a loop [] and three beta-strands. This alignment does not catch the third strand as it is separated from the rest of the structure by around 100 residues. This strand is conserved in homologues but the intervening sequence is not. Much of the function of P10930 from SWISSPROT appears to reside in this intervening region. In the tertiary structure of the phage baseplate this domain forms part of the collar and may bind SO4. The long unconserved region maybe due to domain swapping in and out of a loop or due to rapid evolution.; PDB: 1OCY_A 2XGF_C 1H6W_A.
Probab=22.74 E-value=33 Score=18.06 Aligned_cols=14 Identities=29% Similarity=0.679 Sum_probs=6.1
Q ss_pred CCCceEEEEecceeec
Q 042834 3 PPNGWFKVNVDAAIKL 18 (98)
Q Consensus 3 P~~g~~k~n~D~s~~~ 18 (98)
+|.||+.| ||+...
T Consensus 11 ~P~gwl~c--dG~~~~ 24 (57)
T PF07484_consen 11 APSGWLLC--DGQSLS 24 (57)
T ss_dssp -STTEEES--BS-B--
T ss_pred CCchhhhc--CCCcCC
Confidence 45677754 565544
No 140
>PRK05593 rplR 50S ribosomal protein L18; Reviewed
Probab=22.62 E-value=1.9e+02 Score=17.54 Aligned_cols=52 Identities=13% Similarity=0.199 Sum_probs=33.0
Q ss_pred EEEEEeCCCccEEEeeeeeecc------cCCHHHHHHHHHHHHHHHHHHCCCccEEEEe
Q 042834 25 LGVIIRDSRGKAVAATVQKVSF------RGDVAYMEAAAVNLGIQVAQNAKFLPIIVES 77 (98)
Q Consensus 25 ~G~vird~~G~~i~~~~~~~~~------~~~~~~aE~~Al~~aL~~a~~~g~~~v~~es 77 (98)
+.=+|.|..+..+.+.+..-.. ..+...|...+.+.|-+ +.+.|+..|+|.-
T Consensus 37 yAQvidd~~~~tl~saST~e~~~k~~~~~~n~~aa~~vG~~la~r-a~~~gi~~vvfDr 94 (117)
T PRK05593 37 YAQVIDDVKGKTLASASTLEKDVRAGLKGGNKEAAKKVGKLIAER-AKAKGIKQVVFDR 94 (117)
T ss_pred EEEEEECCCCEEEEEEecCcHhHhccccCCCHHHHHHHHHHHHHH-HHHCCCCEEEEcC
Confidence 3456777777777666532111 45556666666666544 6788999988763
No 141
>PRK10425 DNase TatD; Provisional
Probab=22.52 E-value=57 Score=22.41 Aligned_cols=20 Identities=10% Similarity=0.144 Sum_probs=15.5
Q ss_pred HHHHHCCCccEEEEechHHH
Q 042834 63 QVAQNAKFLPIIVESDSKEV 82 (98)
Q Consensus 63 ~~a~~~g~~~v~~esDs~~v 82 (98)
+.+......++.+|||+..+
T Consensus 188 ~~~~~ipldrlLlETDaP~l 207 (258)
T PRK10425 188 ELLPLIPAERLLLETDAPYL 207 (258)
T ss_pred HHHHhCChHHEEEeccCCCC
Confidence 33456788999999999764
No 142
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=22.38 E-value=1.5e+02 Score=16.33 Aligned_cols=18 Identities=28% Similarity=0.562 Sum_probs=13.4
Q ss_pred cceEEEEEeCCCccEEEe
Q 042834 22 TAGLGVIIRDSRGKAVAA 39 (98)
Q Consensus 22 ~~g~G~vird~~G~~i~~ 39 (98)
.-|+|+|..|..|.-++-
T Consensus 12 ~KGfGFI~~~~gg~dVFv 29 (74)
T PRK09937 12 AKGFGFICPEGGGEDIFA 29 (74)
T ss_pred CCCeEEEeeCCCCccEEE
Confidence 578999999887754443
No 143
>PRK15381 pathogenicity island 2 effector protein SseJ; Provisional
Probab=22.25 E-value=41 Score=24.96 Aligned_cols=52 Identities=17% Similarity=0.136 Sum_probs=33.6
Q ss_pred eEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHH-------HHHCCCccEEEEechHHH
Q 042834 24 GLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQV-------AQNAKFLPIIVESDSKEV 82 (98)
Q Consensus 24 g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~-------a~~~g~~~v~~esDs~~v 82 (98)
+=-.||+|++|+.|.+-+-- + +.|+..+..-+.- .+-.++..|.+.+||+.=
T Consensus 96 ~~~~~i~~~~~~~~l~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~vFGDSlsD 154 (408)
T PRK15381 96 ADKLIIKDDNGENILSIEVE---C----HPEAFGLAKEINKSHPKPKNISLGDITRLVFFGDSLSD 154 (408)
T ss_pred CceEEEecCCCceEEEEEEe---c----CHHHHHHHHHhcccCCCCCccccCCCCeEEEeCCcccc
Confidence 34579999999999876542 2 3355544333322 233467889999999753
No 144
>PRK09822 lipopolysaccharide core biosynthesis protein; Provisional
Probab=22.23 E-value=1.3e+02 Score=20.99 Aligned_cols=20 Identities=35% Similarity=0.335 Sum_probs=17.4
Q ss_pred HHHHHHHHHHCCCccEEEEe
Q 042834 58 VNLGIQVAQNAKFLPIIVES 77 (98)
Q Consensus 58 l~~aL~~a~~~g~~~v~~es 77 (98)
.++|||++-.+|+.+|.+.+
T Consensus 173 aY~ALQIaY~LGF~~I~iaG 192 (269)
T PRK09822 173 AYTAIQVAYSLKYGRIICSG 192 (269)
T ss_pred HHHHHHHHHHcCCCEEEEEe
Confidence 46889999999999998865
No 145
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.98 E-value=2.7e+02 Score=18.93 Aligned_cols=46 Identities=17% Similarity=0.071 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCccEEEEechHHHHHHHhcCCCCCcccc
Q 042834 49 DVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKEVVDLARNRNCLSSLLS 97 (98)
Q Consensus 49 ~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~~~~~~~s~~~ 97 (98)
++..+|+++ --+++++..|+++|+..+|-. +...+...+..-+.+|
T Consensus 119 ~~a~~el~~--g~ie~a~~~G~~~IvtVt~~~-meril~r~Gw~~~riG 164 (209)
T COG3916 119 SPAAYELFA--GMIEYALARGITGIVTVTDTG-MERILRRAGWPLTRIG 164 (209)
T ss_pred cHHHHHHHH--HHHHHHHHcCCceEEEEEchH-HHHHHHHcCCCeEEcC
Confidence 334555544 568999999999999999954 4566655555444443
No 146
>PF12991 DUF3875: Domain of unknown function, B. Theta Gene description (DUF3875); InterPro: IPR024451 This domain of unknown function is found in proteins from Bacteroidetes, including the conjugation system ATPase, TraG.
Probab=21.96 E-value=1.1e+02 Score=16.11 Aligned_cols=32 Identities=16% Similarity=0.048 Sum_probs=24.7
Q ss_pred EEeCCCccEEEeeeeeecccCCHHHHHHHHHH
Q 042834 28 IIRDSRGKAVAATVQKVSFRGDVAYMEAAAVN 59 (98)
Q Consensus 28 vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~ 59 (98)
||-..+|.+..++.-.++.+-+.-.+|+.|+.
T Consensus 22 civSk~gDiTv~f~v~LPEiFtls~~eYea~H 53 (54)
T PF12991_consen 22 CIVSKNGDITVAFRVELPEIFTLSEAEYEAIH 53 (54)
T ss_pred cEEecCCCEEEEEEecCCeeEEechhHhHHhc
Confidence 45667788888888888888888888887763
No 147
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=21.89 E-value=1.1e+02 Score=23.43 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=27.4
Q ss_pred EEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHH
Q 042834 28 IIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQN 67 (98)
Q Consensus 28 vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~ 67 (98)
++|+.+|.-+.+ +....+...-.++.+|..+|+.+.+
T Consensus 176 tvRe~dGLA~SS---RN~~Ls~~~r~~A~~l~~~L~~~~~ 212 (512)
T PRK13477 176 TVREADGLALSS---RNQYLSAEERQQAAALYRALQAAKK 212 (512)
T ss_pred ceECCCCchhhh---hcccCCHHHHHHHHHHHHHHHHHHH
Confidence 689999975544 4445556677788999999988854
No 148
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=21.65 E-value=1.8e+02 Score=20.96 Aligned_cols=46 Identities=11% Similarity=0.092 Sum_probs=30.8
Q ss_pred ceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEechHH
Q 042834 23 AGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKE 81 (98)
Q Consensus 23 ~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~ 81 (98)
.++-.++-|.+|-.-. +...+++. . ++|+.++.+| .+++|-|++..
T Consensus 20 ~~~DtfifDcDGVlW~-g~~~ipGs-----~------e~l~~L~~~g-K~i~fvTNNSt 65 (306)
T KOG2882|consen 20 DSFDTFIFDCDGVLWL-GEKPIPGS-----P------EALNLLKSLG-KQIIFVTNNST 65 (306)
T ss_pred hhcCEEEEcCCcceee-cCCCCCCh-----H------HHHHHHHHcC-CcEEEEeCCCc
Confidence 4556788888886554 44455543 2 4567777888 88888888643
No 149
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=21.47 E-value=1.4e+02 Score=17.44 Aligned_cols=18 Identities=28% Similarity=0.682 Sum_probs=12.9
Q ss_pred ceEEEEEeCCCccEEEee
Q 042834 23 AGLGVIIRDSRGKAVAAT 40 (98)
Q Consensus 23 ~g~G~vird~~G~~i~~~ 40 (98)
.++++++.|.+|+++...
T Consensus 3 ~~v~~ii~~~~~~iLl~~ 20 (129)
T cd04678 3 VGVGVFVLNPKGKVLLGK 20 (129)
T ss_pred eEEEEEEECCCCeEEEEe
Confidence 467788888877776654
No 150
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=21.33 E-value=4.4e+02 Score=21.21 Aligned_cols=78 Identities=15% Similarity=0.102 Sum_probs=43.2
Q ss_pred CCCceEEEEecceeecCCCc--ceEEEEEeCCCccEEEeeeee----ecccCCHHHHHHHH-HHHHHHHHHH-CCCccEE
Q 042834 3 PPNGWFKVNVDAAIKLSDQT--AGLGVIIRDSRGKAVAATVQK----VSFRGDVAYMEAAA-VNLGIQVAQN-AKFLPII 74 (98)
Q Consensus 3 P~~g~~k~n~D~s~~~~~~~--~g~G~vird~~G~~i~~~~~~----~~~~~~~~~aE~~A-l~~aL~~a~~-~g~~~v~ 74 (98)
+-...+-+|+|=+|-.+.+. .|+++|-|..+-.++.+.-.+ +.+.+....||..+ ++.++-.++- ..--+|.
T Consensus 450 ~l~~~LyvYiDPAfT~N~~ASGTGia~vg~~~~~~ii~GlEHffL~~Ltg~s~~~Ia~Ca~~~i~~v~~lHp~~~~v~va 529 (668)
T PHA03372 450 FLGKTLYVYLDPAFTSNRRASGTGIAAVGTYRDQYIIYGLEHYFLRDLLESSETAIAECAAHMILSVLSLHPFFTEVRIA 529 (668)
T ss_pred ccCCeEEEEECCccccCCccccceEEEEEEecCCEEEEecHHHHHHHhcCchHHHHHHHHHHHHHHHHHhCcccceEEEE
Confidence 34567889999999887655 455566666553444433222 23333445555433 3333333332 2336788
Q ss_pred EEechH
Q 042834 75 VESDSK 80 (98)
Q Consensus 75 ~esDs~ 80 (98)
+|+.|.
T Consensus 530 vEGNSs 535 (668)
T PHA03372 530 IEGNSN 535 (668)
T ss_pred EecCcc
Confidence 898553
No 151
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=21.25 E-value=1.1e+02 Score=16.60 Aligned_cols=13 Identities=38% Similarity=0.764 Sum_probs=6.6
Q ss_pred CCCCceEEEEecc
Q 042834 2 SPPNGWFKVNVDA 14 (98)
Q Consensus 2 ~P~~g~~k~n~D~ 14 (98)
||..|.+.+.+||
T Consensus 37 ~~~~G~Fev~~~g 49 (72)
T TIGR02174 37 PPTTGAFEVTVNG 49 (72)
T ss_pred cCCCcEEEEEECC
Confidence 4455555555543
No 152
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=21.24 E-value=2.7e+02 Score=19.54 Aligned_cols=39 Identities=13% Similarity=0.042 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHCCCccEEEEec--hHHHHHHHhcCC
Q 042834 52 YMEAAAVNLGIQVAQNAKFLPIIVESD--SKEVVDLARNRN 90 (98)
Q Consensus 52 ~aE~~Al~~aL~~a~~~g~~~v~~esD--s~~vv~~l~~~~ 90 (98)
...-.|+..|.++.++.|.+-|.+|.- ...+|+.|.+.+
T Consensus 91 ~s~e~av~nA~rl~ke~GadaVKlEGg~~~~~~i~~l~~~G 131 (261)
T PF02548_consen 91 ASPEQAVRNAGRLMKEAGADAVKLEGGAEIAETIKALVDAG 131 (261)
T ss_dssp SSHHHHHHHHHHHHHTTT-SEEEEEBSGGGHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEeccchhHHHHHHHHHHCC
Confidence 345678999999999999999999985 466788876554
No 153
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=21.04 E-value=1.6e+02 Score=21.40 Aligned_cols=22 Identities=32% Similarity=0.359 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHCCCccEEEEe
Q 042834 56 AAVNLGIQVAQNAKFLPIIVES 77 (98)
Q Consensus 56 ~Al~~aL~~a~~~g~~~v~~es 77 (98)
.+.++++.++...|+..|++||
T Consensus 130 ~at~~~i~~ldAaG~DvIIVET 151 (323)
T COG1703 130 RATREAIKLLDAAGYDVIIVET 151 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEEe
Confidence 4567788888889999999997
No 154
>PF03481 SUA5: Putative GTP-binding controlling metal-binding; InterPro: IPR005145 The function of this domain is unknown, it is found in P32579 from SWISSPROT and its relatives. It is found C-terminal to the IPR006070 from INTERPRO.; PDB: 2EQA_A 3AJE_A 4E1B_A 2YV4_A.
Probab=20.82 E-value=2e+02 Score=17.19 Aligned_cols=23 Identities=13% Similarity=0.117 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHCCCccEEEEe
Q 042834 55 AAAVNLGIQVAQNAKFLPIIVES 77 (98)
Q Consensus 55 ~~Al~~aL~~a~~~g~~~v~~es 77 (98)
+..|+.+|..+-+.|...|.+|.
T Consensus 84 A~~Lf~~LR~~D~~~~~~I~ie~ 106 (125)
T PF03481_consen 84 ARNLFAALRELDELGVDLILIEG 106 (125)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEE
T ss_pred HHHHHHHHHHHhhcCCCEEEEee
Confidence 56699999999999999999986
No 155
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=20.81 E-value=1.9e+02 Score=18.50 Aligned_cols=35 Identities=6% Similarity=0.023 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHCCCccEEEEechHHHHHHHhcC
Q 042834 55 AAAVNLGIQVAQNAKFLPIIVESDSKEVVDLARNR 89 (98)
Q Consensus 55 ~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~~~ 89 (98)
+...--|-+.++++|++++.+-|.+..=+..|.+-
T Consensus 125 ~R~ygigaqIL~dLGV~~~rLLtnnp~k~~~L~g~ 159 (169)
T PF00925_consen 125 LRDYGIGAQILRDLGVKKMRLLTNNPRKYVALEGF 159 (169)
T ss_dssp ---THHHHHHHHHTT--SEEEE-S-HHHHHHHHHT
T ss_pred cccHHHHHHHHHHcCCCEEEECCCChhHHHHHhcC
Confidence 44455688999999999999999988777777654
No 156
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=20.75 E-value=1.4e+02 Score=17.42 Aligned_cols=18 Identities=28% Similarity=0.553 Sum_probs=13.7
Q ss_pred ceEEEEEeCCCccEEEee
Q 042834 23 AGLGVIIRDSRGKAVAAT 40 (98)
Q Consensus 23 ~g~G~vird~~G~~i~~~ 40 (98)
++++++++|.+|+++...
T Consensus 2 ~av~~~i~~~~~~vLL~~ 19 (130)
T cd04681 2 AAVGVLILNEDGELLVVR 19 (130)
T ss_pred ceEEEEEEcCCCcEEEEE
Confidence 467888888888876654
No 157
>PRK09060 dihydroorotase; Validated
Probab=20.69 E-value=2.4e+02 Score=20.84 Aligned_cols=39 Identities=10% Similarity=0.051 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCccEEEEechHHHHHHHhc
Q 042834 50 VAYMEAAAVNLGIQVAQNAKFLPIIVESDSKEVVDLARN 88 (98)
Q Consensus 50 ~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~~ 88 (98)
|..+|..++..++.+|...|..=-+.-..+..-++.+..
T Consensus 208 p~~aE~~av~~~~~la~~~~~~lhi~h~st~~~v~~i~~ 246 (444)
T PRK09060 208 DEEAALLATRRLVRLARETGRRIHVLHVSTAEEIDFLAD 246 (444)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHH
Confidence 678999999999999999887543555556666666653
No 158
>cd06908 M14_AGBL4_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-4, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL4 and the mouse cytosolic carboxypeptidase (CCP)-6. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal
Probab=20.55 E-value=2e+02 Score=20.03 Aligned_cols=48 Identities=17% Similarity=-0.015 Sum_probs=26.6
Q ss_pred EEEecceeecCCCcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHH
Q 042834 9 KVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQN 67 (98)
Q Consensus 9 k~n~D~s~~~~~~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~ 67 (98)
-+|.||....+.+....| .|-+-.|- ....-.+-|..|++.-|+-...
T Consensus 91 ~~NPDGv~~gn~R~~~~G---~DLNR~w~--------~p~~~~~PEv~av~~~i~~~~~ 138 (261)
T cd06908 91 MLNPDGVFLGNYRCSLMG---HDLNRHWH--------DPSPWAHPTLHAVKNLLKELDN 138 (261)
T ss_pred eecCcceeecCCcCcCcC---cCCCCCCC--------CCCcccChHHHHHHHHHHHhhh
Confidence 369999998764433222 23333331 1111246689998888876543
No 159
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=20.45 E-value=1.7e+02 Score=16.15 Aligned_cols=26 Identities=15% Similarity=-0.029 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHCCCccEEEEech
Q 042834 54 EAAAVNLGIQVAQNAKFLPIIVESDS 79 (98)
Q Consensus 54 E~~Al~~aL~~a~~~g~~~v~~esDs 79 (98)
|..-|.+-|.....+|+.++.+..|.
T Consensus 3 e~~~L~~wl~~~~~lG~d~i~i~d~~ 28 (97)
T PF13704_consen 3 EADYLPEWLAHHLALGVDHIYIYDDG 28 (97)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 44456677788889999999998774
No 160
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=20.40 E-value=2.5e+02 Score=18.01 Aligned_cols=60 Identities=13% Similarity=0.037 Sum_probs=34.8
Q ss_pred eecCCCcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHH-HCCCccEEEE
Q 042834 16 IKLSDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQ-NAKFLPIIVE 76 (98)
Q Consensus 16 ~~~~~~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~-~~g~~~v~~e 76 (98)
..+.....|||++=.. .++...-..+.+.....++..-+..|...|+... +..-..+.+|
T Consensus 4 IDPGl~~tG~gvi~~~-~~~~~~v~~G~I~t~~~~~~~RL~~I~~~l~~~i~~y~P~~~aiE 64 (156)
T TIGR00228 4 IDPGSRVTGYGVIRQV-GRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPNYFAIE 64 (156)
T ss_pred ECcccccccEEEEEec-CCeEEEEEeeEEECCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 3455677888887543 3444333333443223455555667888888776 4555666666
No 161
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=20.21 E-value=1.2e+02 Score=14.11 Aligned_cols=20 Identities=10% Similarity=0.008 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHCCCccEEE
Q 042834 56 AAVNLGIQVAQNAKFLPIIV 75 (98)
Q Consensus 56 ~Al~~aL~~a~~~g~~~v~~ 75 (98)
..+...++++.+.++++|.+
T Consensus 45 ~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 45 ALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred HHHHHHHHHHHHcCCcEEEe
Confidence 34556778888888888765
No 162
>PRK10812 putative DNAse; Provisional
Probab=20.19 E-value=71 Score=22.00 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=14.8
Q ss_pred HHHHHCCCccEEEEechHH
Q 042834 63 QVAQNAKFLPIIVESDSKE 81 (98)
Q Consensus 63 ~~a~~~g~~~v~~esDs~~ 81 (98)
+++......++.+|||+..
T Consensus 190 ~~~~~ipldrlLlETD~P~ 208 (265)
T PRK10812 190 DAARYVPLDRLLVETDSPY 208 (265)
T ss_pred HHHHhCChhhEEEecCCCC
Confidence 4455677899999999864
No 163
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=20.19 E-value=1.7e+02 Score=20.83 Aligned_cols=34 Identities=29% Similarity=0.293 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHHHHHHHC-CC-ccEEEEechHHH
Q 042834 49 DVAYMEAAAVNLGIQVAQNA-KF-LPIIVESDSKEV 82 (98)
Q Consensus 49 ~~~~aE~~Al~~aL~~a~~~-g~-~~v~~esDs~~v 82 (98)
+++.+-+-.+..|++-+++. ++ .+|.+|.|++.=
T Consensus 165 DNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~ 200 (280)
T COG0157 165 DNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEE 200 (280)
T ss_pred hhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHH
Confidence 67777777799999999876 55 559999998753
Done!