Query 042834
Match_columns 98
No_of_seqs 181 out of 1068
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 17:30:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042834.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042834hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u3g_D Ribonuclease H, RNAse H 99.8 5.7E-20 2E-24 113.2 10.6 85 6-91 2-90 (140)
2 1zbf_A Ribonuclease H-related 99.8 1.1E-20 3.9E-25 118.1 7.2 86 1-90 5-90 (142)
3 3hst_B Protein RV2228C/MT2287; 99.8 5.6E-20 1.9E-24 113.6 10.1 83 7-90 3-86 (141)
4 2ehg_A Ribonuclease HI; RNAse 99.8 1.1E-19 3.8E-24 113.7 10.3 85 7-92 1-90 (149)
5 2qkb_A Ribonuclease H1, HS-RNA 99.8 7.3E-19 2.5E-23 110.7 9.7 84 2-88 2-88 (154)
6 1ril_A Ribonuclease H; hydrola 99.7 6.8E-18 2.3E-22 107.7 5.5 83 1-88 2-84 (166)
7 4htu_A Ribonuclease H, RNAse H 99.7 5.9E-17 2E-21 100.1 8.1 81 5-89 3-83 (134)
8 3qio_A GAG-POL polyprotein; RN 99.7 2.5E-16 8.6E-21 99.0 9.1 78 1-88 6-83 (150)
9 1jl1_A Ribonuclease HI; RNAse 99.6 7.9E-16 2.7E-20 97.0 7.0 77 7-88 4-80 (155)
10 3h08_A RNH (ribonuclease H); R 99.6 1.7E-15 5.7E-20 94.5 8.0 78 6-88 3-80 (146)
11 2e4l_A Ribonuclease HI, RNAse 99.6 2.3E-15 8E-20 95.2 7.4 78 6-88 5-82 (158)
12 2kq2_A Ribonuclease H-related 99.6 1.4E-15 4.7E-20 95.2 5.5 83 3-89 2-88 (147)
13 3p1g_A Xenotropic murine leuke 99.6 1.8E-14 6.1E-19 91.9 10.0 80 2-87 18-97 (165)
14 2lsn_A Reverse transcriptase; 99.5 1.1E-12 3.6E-17 83.7 11.5 82 5-88 5-93 (165)
15 2zd1_A Reverse transcriptase/r 99.4 2.3E-12 8E-17 94.8 8.7 78 2-89 434-511 (557)
16 1mu2_A HIV-2 RT; HIV-2 reverse 99.3 4.5E-12 1.6E-16 93.2 9.2 77 2-88 431-507 (555)
17 1uwz_A Cytidine deaminase; CDD 94.4 0.073 2.5E-06 32.4 4.6 57 21-78 22-78 (136)
18 2fr5_A Cytidine deaminase; tet 93.6 0.1 3.4E-06 32.2 4.1 57 21-78 34-90 (146)
19 2b3j_A TRNA adenosine deaminas 90.9 0.32 1.1E-05 30.1 4.0 55 22-77 26-81 (159)
20 2z3g_A Blasticidin-S deaminase 90.8 0.41 1.4E-05 28.8 4.3 55 21-78 25-79 (130)
21 2a8n_A Cytidine and deoxycytid 90.7 0.26 9E-06 30.0 3.4 54 22-76 23-77 (144)
22 2nx8_A TRNA-specific adenosine 90.3 0.38 1.3E-05 30.5 4.0 55 22-77 35-90 (179)
23 1wwr_A TRNA adenosine deaminas 89.8 0.48 1.6E-05 29.8 4.2 56 21-77 41-97 (171)
24 1r5t_A Cytidine deaminase; zin 88.5 0.77 2.6E-05 28.0 4.3 57 21-78 30-87 (142)
25 2d30_A Cytidine deaminase; pur 88.0 0.78 2.7E-05 28.0 4.1 66 21-87 31-106 (141)
26 1z3a_A TRNA-specific adenosine 87.6 0.55 1.9E-05 29.4 3.3 54 22-76 28-82 (168)
27 1wkq_A Guanine deaminase; doma 86.9 0.84 2.9E-05 28.5 3.9 53 23-76 32-85 (164)
28 3dh1_A TRNA-specific adenosine 86.5 0.82 2.8E-05 29.2 3.7 44 23-67 46-90 (189)
29 2w4l_A DCMP deaminse, deoxycyt 86.1 0.61 2.1E-05 29.5 2.9 40 22-61 31-90 (178)
30 2zd1_B P51 RT; P51/P66, hetero 85.8 3.6 0.00012 29.2 7.1 79 4-87 321-404 (428)
31 1p6o_A Cytosine deaminase; hyd 84.6 0.72 2.5E-05 28.6 2.7 42 22-63 33-76 (161)
32 3r2n_A Cytidine deaminase; str 84.1 1.1 3.9E-05 27.2 3.4 66 21-87 29-104 (138)
33 2g84_A Cytidine and deoxycytid 82.7 2.8 9.5E-05 26.8 5.0 42 24-65 49-92 (197)
34 3mpz_A Cytidine deaminase; ssg 82.3 1.5 5E-05 27.2 3.4 57 21-78 44-100 (150)
35 1rw3_A POL polyprotein; RNA an 79.8 0.31 1.1E-05 34.8 -0.4 78 7-90 346-429 (455)
36 3b8f_A Putative blasticidin S 76.0 2.1 7E-05 26.0 2.6 53 24-77 24-76 (142)
37 3oj6_A Blasticidin-S deaminase 74.4 8.9 0.0003 23.8 5.3 62 23-87 51-123 (158)
38 3tue_A Tryparedoxin peroxidase 74.3 13 0.00046 24.0 6.4 52 16-69 139-190 (219)
39 3dmo_A Cytidine deaminase; str 73.7 4.8 0.00016 24.4 3.8 67 21-88 30-108 (138)
40 2hvw_A Deoxycytidylate deamina 70.0 11 0.00037 23.8 5.1 41 22-63 60-116 (184)
41 3sbc_A Peroxiredoxin TSA1; alp 67.2 20 0.0007 23.1 6.0 49 19-69 138-186 (216)
42 3qb8_A A654L protein; GNAT N-a 60.9 20 0.00069 21.0 4.9 35 57-91 128-162 (197)
43 4g84_A Histidine--tRNA ligase, 58.9 44 0.0015 23.5 7.7 63 22-85 107-177 (464)
44 3ugs_B Undecaprenyl pyrophosph 57.9 25 0.00084 23.1 5.1 47 28-77 12-58 (225)
45 1ctt_A Cytidine deaminase; hyd 57.6 10 0.00034 25.9 3.3 58 22-79 208-266 (294)
46 3ewt_E Tumor necrosis factor r 55.0 12 0.00042 15.9 3.0 21 50-70 5-25 (25)
47 2hxv_A Diaminohydroxyphosphori 54.6 8.5 0.00029 26.7 2.6 36 23-62 36-71 (360)
48 2b3z_A Riboflavin biosynthesis 53.9 11 0.00037 26.3 3.1 37 22-62 35-71 (373)
49 4g85_A Histidine-tRNA ligase, 53.0 48 0.0017 23.9 6.5 64 21-85 159-230 (517)
50 2g6v_A Riboflavin biosynthesis 49.6 11 0.00039 26.5 2.7 35 23-61 52-86 (402)
51 2g3a_A Acetyltransferase; stru 48.1 32 0.0011 19.3 4.2 33 58-90 97-129 (152)
52 1vq2_A DCMP deaminase, deoxycy 47.6 16 0.00054 23.0 2.9 14 50-63 102-115 (193)
53 4h8e_A Undecaprenyl pyrophosph 46.1 8.9 0.00031 25.7 1.6 53 23-79 26-78 (256)
54 2hjj_A Hypothetical protein YK 45.3 29 0.001 19.2 3.3 24 19-42 31-54 (87)
55 1ctt_A Cytidine deaminase; hyd 43.0 25 0.00086 23.9 3.5 43 21-63 69-113 (294)
56 4g5a_A Uncharacterized protein 38.5 17 0.00059 20.0 1.7 37 2-38 17-58 (99)
57 2zd1_A Reverse transcriptase/r 37.7 74 0.0025 23.1 5.5 77 5-86 324-405 (557)
58 3ipw_A Hydrolase TATD family p 37.7 14 0.00048 25.4 1.6 21 62-82 231-251 (325)
59 3rac_A Histidine-tRNA ligase; 37.6 1E+02 0.0034 21.4 6.3 63 21-84 119-193 (373)
60 4fd4_A Arylalkylamine N-acetyl 37.0 51 0.0017 19.5 4.0 34 58-91 148-181 (217)
61 3sgv_B Undecaprenyl pyrophosph 36.9 23 0.00079 23.6 2.4 50 24-77 20-69 (253)
62 2d4p_A Hypothetical protein TT 36.8 57 0.002 19.6 4.1 38 58-95 80-119 (141)
63 3gg7_A Uncharacterized metallo 36.2 22 0.00076 23.4 2.3 20 62-81 180-199 (254)
64 4e0a_A BH1408 protein; structu 36.0 57 0.0019 18.1 4.9 35 57-91 109-145 (164)
65 3qpm_A Peroxiredoxin; oxidored 34.5 86 0.0029 20.0 4.9 42 26-69 170-211 (240)
66 3tjj_A Peroxiredoxin-4; thiore 34.3 79 0.0027 20.5 4.8 42 26-69 184-225 (254)
67 3msh_A Hepatitis B virus X-int 34.3 66 0.0023 18.3 7.0 54 21-81 15-73 (99)
68 3g8w_A Lactococcal prophage PS 33.8 65 0.0022 18.1 4.7 36 57-92 102-139 (169)
69 3od1_A ATP phosphoribosyltrans 33.7 1.2E+02 0.0042 21.2 8.4 63 21-85 105-173 (400)
70 1t23_A Chromosomal protein MC1 33.2 66 0.0023 18.0 3.8 20 27-46 6-25 (93)
71 3mxt_A Pantothenate synthetase 33.1 32 0.0011 23.3 2.7 38 28-68 177-214 (285)
72 1xcc_A 1-Cys peroxiredoxin; un 32.8 92 0.0032 19.5 5.7 43 26-70 130-172 (220)
73 2xio_A Putative deoxyribonucle 31.6 26 0.00089 23.2 2.1 20 62-81 203-222 (301)
74 3qas_B Undecaprenyl pyrophosph 31.6 29 0.001 23.1 2.3 51 24-78 20-70 (253)
75 2d2r_A Undecaprenyl pyrophosph 31.1 29 0.00099 23.0 2.2 48 28-78 21-68 (245)
76 1usy_A ATP phosphoribosyltrans 31.1 1.1E+02 0.0039 20.0 5.7 64 22-87 73-139 (275)
77 2r5o_A Putative ATP binding co 29.8 62 0.0021 19.9 3.5 35 8-42 72-106 (188)
78 2jlm_A Putative phosphinothric 29.5 88 0.003 18.3 4.9 34 58-91 112-147 (182)
79 3q12_A Pantoate--beta-alanine 29.4 32 0.0011 23.4 2.2 38 28-68 180-217 (287)
80 3e2v_A 3'-5'-exonuclease; stru 28.7 30 0.001 24.5 2.1 21 61-81 286-306 (401)
81 1f75_A Undecaprenyl pyrophosph 28.4 29 0.001 23.0 1.9 52 23-78 22-73 (249)
82 3bbj_A Putative thioesterase I 28.1 1.3E+02 0.0043 19.6 5.7 41 1-42 226-266 (272)
83 2vg3_A Undecaprenyl pyrophosph 27.9 28 0.00095 23.6 1.7 28 51-78 81-108 (284)
84 4gym_A Glyoxalase/bleomycin re 26.9 48 0.0016 18.9 2.5 19 22-40 113-131 (149)
85 3rcm_A TATD family hydrolase; 26.8 23 0.0008 23.6 1.2 19 63-81 194-212 (287)
86 3a2v_A Probable peroxiredoxin; 26.7 1.3E+02 0.0046 19.5 4.9 41 26-68 126-166 (249)
87 1tiq_A Protease synthase and s 26.4 1E+02 0.0034 17.9 4.5 34 58-91 112-147 (180)
88 3i3g_A N-acetyltransferase; ma 26.4 90 0.0031 17.3 4.1 33 58-91 118-150 (161)
89 1prx_A HORF6; peroxiredoxin, h 26.3 1.3E+02 0.0043 19.0 5.5 42 26-69 133-174 (224)
90 4g2e_A Peroxiredoxin; redox pr 26.3 97 0.0033 18.0 3.9 35 27-62 122-156 (157)
91 4eg2_A Cytidine deaminase; UMP 26.1 86 0.0029 21.4 3.9 58 21-78 211-269 (298)
92 3r8n_K 30S ribosomal protein S 25.8 1E+02 0.0035 17.9 5.4 59 28-87 21-89 (117)
93 3te4_A GH12636P, dopamine N ac 25.5 1E+02 0.0035 18.6 4.0 34 58-91 147-180 (215)
94 2gan_A 182AA long hypothetical 25.4 96 0.0033 18.1 3.8 34 58-91 128-162 (190)
95 1z4e_A Transcriptional regulat 25.2 60 0.002 18.1 2.7 33 58-90 107-141 (153)
96 3eo4_A Uncharacterized protein 25.1 88 0.003 17.6 3.5 35 57-91 111-147 (164)
97 2v2g_A Peroxiredoxin 6; oxidor 25.1 1.4E+02 0.0047 19.0 6.2 42 26-69 129-170 (233)
98 4e17_B Catenin alpha-1; four h 25.0 57 0.002 15.4 2.0 17 50-66 16-32 (40)
99 2llz_A Uncharacterized protein 24.9 57 0.002 18.6 2.4 41 22-62 35-75 (100)
100 2fiw_A GCN5-related N-acetyltr 24.7 93 0.0032 17.4 3.5 33 58-91 104-136 (172)
101 4fd5_A Arylalkylamine N-acetyl 24.4 1.2E+02 0.0042 18.2 4.6 34 58-91 152-185 (222)
102 1zzm_A Putative deoxyribonucle 24.2 35 0.0012 21.7 1.7 17 64-80 193-209 (259)
103 1s1g_A Potassium voltage-gated 24.0 51 0.0018 19.2 2.2 15 4-18 11-25 (124)
104 2dxq_A AGR_C_4057P, acetyltran 23.8 1E+02 0.0035 17.2 4.9 34 58-91 103-138 (150)
105 1on0_A YYCN protein; structura 23.6 1.1E+02 0.0036 17.3 3.7 34 58-91 110-145 (158)
106 3g8q_A Predicted RNA-binding p 23.6 95 0.0032 20.9 3.6 29 24-59 23-51 (278)
107 1uul_A Tryparedoxin peroxidase 23.0 1.3E+02 0.0045 18.1 4.8 41 26-68 129-169 (202)
108 2ge3_A Probable acetyltransfer 22.7 77 0.0026 18.0 2.9 33 58-90 107-141 (170)
109 2o28_A Glucosamine 6-phosphate 22.5 1.2E+02 0.0041 17.4 4.4 33 58-91 138-170 (184)
110 3cjy_A Putative thioesterase; 22.5 1.6E+02 0.0056 18.9 5.5 41 1-42 213-253 (259)
111 3guw_A Uncharacterized protein 22.4 19 0.00066 23.7 0.1 19 63-81 192-210 (261)
112 2nz0_B Potassium voltage-gated 22.3 75 0.0026 19.0 2.8 15 4-18 33-47 (140)
113 3ztl_A Thioredoxin peroxidase; 22.2 1.5E+02 0.0051 18.4 5.6 41 26-68 162-202 (222)
114 2xgf_A Long tail fiber protein 22.2 26 0.00089 23.2 0.7 15 2-18 41-55 (242)
115 2db2_A KIAA0890 protein; DSRM 22.1 78 0.0027 18.5 2.6 22 49-70 71-92 (119)
116 1qst_A TGCN5 histone acetyl tr 21.8 1.2E+02 0.004 17.1 3.6 34 58-92 94-127 (160)
117 1z7m_A ATP phosphoribosyltrans 21.8 2E+02 0.0067 19.6 6.7 63 22-86 120-188 (344)
118 3t90_A Glucose-6-phosphate ace 21.5 1.1E+02 0.0037 16.6 3.8 34 57-91 104-137 (149)
119 3d8p_A Acetyltransferase of GN 21.4 1.1E+02 0.0039 16.7 3.6 35 57-91 99-135 (163)
120 1v8y_A ADP-ribose pyrophosphat 21.2 95 0.0033 18.2 3.1 34 6-40 18-51 (170)
121 2xzm_K RPS14E; ribosome, trans 20.9 1.5E+02 0.0052 18.0 4.9 61 28-89 43-122 (151)
122 1j6o_A TATD-related deoxyribon 20.9 34 0.0012 22.1 1.0 17 64-80 200-216 (268)
123 4h89_A GCN5-related N-acetyltr 20.8 1.3E+02 0.0045 17.3 4.4 34 58-91 110-146 (173)
124 1yvk_A Hypothetical protein BS 20.6 1.3E+02 0.0045 17.2 3.9 34 58-91 85-120 (163)
125 1xwy_A DNAse TATD, deoxyribonu 20.5 32 0.0011 21.9 0.9 18 64-81 193-210 (264)
126 3n4p_A Terminase subunit UL89 20.3 2.1E+02 0.0071 19.3 7.1 75 5-79 60-142 (279)
127 1ufh_A YYCN protein; alpha and 20.2 1.3E+02 0.0045 17.0 4.5 35 57-91 133-169 (180)
128 1mk4_A Hypothetical protein YQ 20.2 1.2E+02 0.0041 16.6 3.4 35 57-91 89-125 (157)
129 2gzx_A Putative TATD related D 20.1 54 0.0018 20.7 1.9 17 64-80 190-206 (265)
130 3inn_A Pantothenate synthetase 20.0 48 0.0017 22.8 1.7 37 29-68 197-233 (314)
No 1
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.83 E-value=5.7e-20 Score=113.17 Aligned_cols=85 Identities=18% Similarity=0.147 Sum_probs=76.9
Q ss_pred ceEEEEecceeecCCCcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCc----cEEEEechHH
Q 042834 6 GWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFL----PIIVESDSKE 81 (98)
Q Consensus 6 g~~k~n~D~s~~~~~~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~----~v~~esDs~~ 81 (98)
..+++|+|||+..+++.+|+|+++++++|..+...+..++. .+++.||+.|++.||+++.+.+.+ +|.|+|||+.
T Consensus 2 ~~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~~~-~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~ 80 (140)
T 3u3g_D 2 NKIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYIGE-TTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSEL 80 (140)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEEEE-ECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHH
T ss_pred ceEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeCCC-CchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHH
Confidence 36899999999999999999999999999988777776655 589999999999999999999999 9999999999
Q ss_pred HHHHHhcCCC
Q 042834 82 VVDLARNRNC 91 (98)
Q Consensus 82 vv~~l~~~~~ 91 (98)
+++.+++...
T Consensus 81 vi~~i~~~~~ 90 (140)
T 3u3g_D 81 IVRQMQGVYK 90 (140)
T ss_dssp HHHHHTTSSC
T ss_pred HHHHhCCCcc
Confidence 9999998543
No 2
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.83 E-value=1.1e-20 Score=118.07 Aligned_cols=86 Identities=12% Similarity=0.142 Sum_probs=74.0
Q ss_pred CCCCCceEEEEecceeecCCCcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEechH
Q 042834 1 TSPPNGWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSK 80 (98)
Q Consensus 1 ~~P~~g~~k~n~D~s~~~~~~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~ 80 (98)
.||+.+++++|+|||+..+++.+|+|+|++ .+|..+... ..+. ..+++.||++|++.||+.+.+.+. +|.|+|||+
T Consensus 5 ~~~~~~~~~iy~DGa~~gNpG~~G~G~vl~-~~g~~~~~~-~~~~-~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~ 80 (142)
T 1zbf_A 5 AKEEIIWESLSVDVGSQGNPGIVEYKGVDT-KTGEVLFER-EPIP-IGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQ 80 (142)
T ss_dssp ---CCCSSSEEEEEEECSSSEEEEEEEEET-TTCCEEEEC-CCEE-EECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCH
T ss_pred CCCCCCeEEEEEeeccCCCCCCeEEEEEEE-eCCEEEEEe-cccC-CcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehH
Confidence 478899999999999999999999999999 678776543 3344 458999999999999999999999 999999999
Q ss_pred HHHHHHhcCC
Q 042834 81 EVVDLARNRN 90 (98)
Q Consensus 81 ~vv~~l~~~~ 90 (98)
.|++++++..
T Consensus 81 ~vi~w~~~~~ 90 (142)
T 1zbf_A 81 TAIKWVKDKK 90 (142)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHcCC
Confidence 9999999865
No 3
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.83 E-value=5.6e-20 Score=113.62 Aligned_cols=83 Identities=20% Similarity=0.195 Sum_probs=74.4
Q ss_pred eEEEEecceeecCCCcceEEEEEeCCC-ccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEechHHHHHH
Q 042834 7 WFKVNVDAAIKLSDQTAGLGVIIRDSR-GKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKEVVDL 85 (98)
Q Consensus 7 ~~k~n~D~s~~~~~~~~g~G~vird~~-G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~ 85 (98)
.+++|+|||+..+++.+|+|++++++. |.++...+...+ ..+++.||+.|++.||+++.+++.++|.|+|||+.|++.
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~~-~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~ 81 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIG-RATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQ 81 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEEE-EECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccCC-CCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHH
Confidence 589999999999999999999999987 777766666554 468999999999999999999999999999999999999
Q ss_pred HhcCC
Q 042834 86 ARNRN 90 (98)
Q Consensus 86 l~~~~ 90 (98)
+++..
T Consensus 82 i~~~~ 86 (141)
T 3hst_B 82 MSGRW 86 (141)
T ss_dssp HTTSS
T ss_pred HhCCc
Confidence 99854
No 4
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.82 E-value=1.1e-19 Score=113.69 Aligned_cols=85 Identities=9% Similarity=0.021 Sum_probs=73.3
Q ss_pred eEEEEecceee-cCCCcceE-EEEEeCCCccEEEeeeeeec---ccCCHHHHHHHHHHHHHHHHHHCCCccEEEEechHH
Q 042834 7 WFKVNVDAAIK-LSDQTAGL-GVIIRDSRGKAVAATVQKVS---FRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKE 81 (98)
Q Consensus 7 ~~k~n~D~s~~-~~~~~~g~-G~vird~~G~~i~~~~~~~~---~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~ 81 (98)
++++|+|||+. .+++.+|+ |+++++ +|..+........ ...++++||+.|++.||+++.+++.++|.|+|||+.
T Consensus 1 m~~iy~DGs~~~~n~g~~G~~G~vi~~-~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~ 79 (149)
T 2ehg_A 1 MIIGYFDGLCEPKNPGGIATFGFVIYL-DNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQL 79 (149)
T ss_dssp CCEEEEEEEEESSSSSSEEEEEEEEEC-SSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHH
T ss_pred CEEEEEeeccCCCCCChheEEEEEEEE-CCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHH
Confidence 57999999999 68899996 999999 8888755443333 367899999999999999999999999999999999
Q ss_pred HHHHHhcCCCC
Q 042834 82 VVDLARNRNCL 92 (98)
Q Consensus 82 vv~~l~~~~~~ 92 (98)
+++.+++....
T Consensus 80 vi~~i~~~w~~ 90 (149)
T 2ehg_A 80 VIKQMNGEYKV 90 (149)
T ss_dssp HHHHHTTSSCC
T ss_pred HHHHHhCcccc
Confidence 99999986443
No 5
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.79 E-value=7.3e-19 Score=110.74 Aligned_cols=84 Identities=18% Similarity=0.162 Sum_probs=72.2
Q ss_pred CCCCceEEEEecceeecCCC---cceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEec
Q 042834 2 SPPNGWFKVNVDAAIKLSDQ---TAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESD 78 (98)
Q Consensus 2 ~P~~g~~k~n~D~s~~~~~~---~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esD 78 (98)
+|+.+++++|+|||+..+++ .+|+|+++++..+..+. ..+....+++.||+.|++.||+++.+.+.++|.|+||
T Consensus 2 ~~~~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~---~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tD 78 (154)
T 2qkb_A 2 SHMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVG---IRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTN 78 (154)
T ss_dssp CEETTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEE---EECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred CCCCCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEE---eecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEEC
Confidence 68889999999999998765 48999999987654332 2344457899999999999999999999999999999
Q ss_pred hHHHHHHHhc
Q 042834 79 SKEVVDLARN 88 (98)
Q Consensus 79 s~~vv~~l~~ 88 (98)
|+.+++.|++
T Consensus 79 S~~vi~~i~~ 88 (154)
T 2qkb_A 79 SMFTINGITN 88 (154)
T ss_dssp CHHHHHHHHT
T ss_pred cHHHHhhhhh
Confidence 9999999986
No 6
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.72 E-value=6.8e-18 Score=107.71 Aligned_cols=83 Identities=13% Similarity=0.081 Sum_probs=67.0
Q ss_pred CCCCCceEEEEecceeecCCCcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEechH
Q 042834 1 TSPPNGWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSK 80 (98)
Q Consensus 1 ~~P~~g~~k~n~D~s~~~~~~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~ 80 (98)
+||+.+.+++|+|||+..+++.+|+|+|+++..+...... .. ...+++.||+.|++.||+.+.+. .+|.|+|||+
T Consensus 2 ~p~~m~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~--~~-~~~Tnn~aEl~Ai~~AL~~~~~~--~~v~I~tDS~ 76 (166)
T 1ril_A 2 NPSPRKRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSG--GE-ACTTNNRMELKAAIEGLKALKEP--CEVDLYTDSH 76 (166)
T ss_dssp ----CCCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECC--EE-EEECHHHHHHHHHHHHHHSCCSC--CEEEEECCCH
T ss_pred CCCCCccEEEEECccccCCCCCEEEEEEEEECCEEEEEec--CC-CCCcHHHHHHHHHHHHHHHhccC--CeEEEEeChH
Confidence 5888899999999999998899999999998665443322 23 34589999999999999988765 5899999999
Q ss_pred HHHHHHhc
Q 042834 81 EVVDLARN 88 (98)
Q Consensus 81 ~vv~~l~~ 88 (98)
.+++.|++
T Consensus 77 ~vi~~i~~ 84 (166)
T 1ril_A 77 YLKKAFTE 84 (166)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhh
Confidence 99999998
No 7
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.70 E-value=5.9e-17 Score=100.13 Aligned_cols=81 Identities=12% Similarity=0.144 Sum_probs=68.3
Q ss_pred CceEEEEecceeecCCCcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEechHHHHH
Q 042834 5 NGWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKEVVD 84 (98)
Q Consensus 5 ~g~~k~n~D~s~~~~~~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~ 84 (98)
.....+|+|||+..+++.+|+|+|+++ .|..+... ..+. ..+++.||++|++.||+.+.+.+.+ |.++|||+.|++
T Consensus 3 p~~~~iytDGac~GNPGp~G~ggV~~~-~g~~~~~~-g~~~-~tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqyVi~ 78 (134)
T 4htu_A 3 IIWESLSVDVGSQGNPGIVEYKGVDTK-TGEVLFER-EPIP-IGTNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQTAIK 78 (134)
T ss_dssp CCSSSEEEEEEEETTTEEEEEEEEETT-TCCEEEEE-EEEE-EECHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHHHHH
T ss_pred ccceEEEEeeccCCCCCCeEEEEEEEE-CCEEEEEe-cCCC-CCchHHHHHHHHHHHHHHHHhCCCC-EEEEcchHHHHH
Confidence 345678999999999999999888888 66655443 3343 4689999999999999999998876 899999999999
Q ss_pred HHhcC
Q 042834 85 LARNR 89 (98)
Q Consensus 85 ~l~~~ 89 (98)
.+++.
T Consensus 79 wi~~~ 83 (134)
T 4htu_A 79 WVKDK 83 (134)
T ss_dssp HHHHT
T ss_pred HHHcC
Confidence 99974
No 8
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.68 E-value=2.5e-16 Score=99.04 Aligned_cols=78 Identities=21% Similarity=0.220 Sum_probs=67.1
Q ss_pred CCCCCceEEEEecceeecCCCcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEechH
Q 042834 1 TSPPNGWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSK 80 (98)
Q Consensus 1 ~~P~~g~~k~n~D~s~~~~~~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~ 80 (98)
+.|+.+++++|+|||+..+++.+|+|+|+++..+..+. . ...+++.||+.|++.||+.+ + .+|.|+|||+
T Consensus 6 ~~P~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~-----~-~~~Tnn~aEl~A~i~AL~~~---~-~~v~i~tDS~ 75 (150)
T 3qio_A 6 KEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVT-----L-TDTTNQKTELQAIYLALQDS---G-LEVNIVTDSQ 75 (150)
T ss_dssp SSCCTTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEE-----E-SSCCHHHHHHHHHHHHHHHS---C-SEEEEEESCH
T ss_pred cCCCCCCEEEEEccCCCCCCCCeEEEEEEEcCCEEEEe-----C-CCCCHHHHHHHHHHHHHHhC---C-CcEEEEeCcH
Confidence 36899999999999999999999999999986554331 2 34689999999999999984 3 8999999999
Q ss_pred HHHHHHhc
Q 042834 81 EVVDLARN 88 (98)
Q Consensus 81 ~vv~~l~~ 88 (98)
.+++.+++
T Consensus 76 ~v~~~i~~ 83 (150)
T 3qio_A 76 YALGIITQ 83 (150)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999986
No 9
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.63 E-value=7.9e-16 Score=97.03 Aligned_cols=77 Identities=16% Similarity=0.155 Sum_probs=64.9
Q ss_pred eEEEEecceeecCCCcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEechHHHHHHH
Q 042834 7 WFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKEVVDLA 86 (98)
Q Consensus 7 ~~k~n~D~s~~~~~~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l 86 (98)
.+++|+|||+..+++.+|+|+++++..+..... .... ..+++.||+.|++.||+++.+. .+|.|+|||+.+++.|
T Consensus 4 ~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~--~~~~-~~tn~~aEl~A~~~aL~~~~~~--~~v~I~tDS~~vi~~i 78 (155)
T 1jl1_A 4 QVEIFTAGSALGNPGPGGYGAILRYRGREKTFS--AGYT-RTTNNRMELMAAIVALEALKEH--AEVILSTDSQYVRQGI 78 (155)
T ss_dssp CEEEEEEEEESSTTEEEEEEEEEEETTEEEEEE--EEEE-EECHHHHHHHHHHHHHHTCCSC--CEEEEEECCHHHHHHH
T ss_pred eEEEEEccccCCCCCceEEEEEEEECCeEEEEe--cCCC-CCcHHHHHHHHHHHHHHHhCcC--CcEEEEeCHHHHHHHH
Confidence 589999999999989999999999866543332 2333 4589999999999999998764 8999999999999999
Q ss_pred hc
Q 042834 87 RN 88 (98)
Q Consensus 87 ~~ 88 (98)
++
T Consensus 79 ~~ 80 (155)
T 1jl1_A 79 TQ 80 (155)
T ss_dssp HT
T ss_pred HH
Confidence 97
No 10
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.62 E-value=1.7e-15 Score=94.46 Aligned_cols=78 Identities=15% Similarity=0.118 Sum_probs=65.7
Q ss_pred ceEEEEecceeecCCCcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEechHHHHHH
Q 042834 6 GWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKEVVDL 85 (98)
Q Consensus 6 g~~k~n~D~s~~~~~~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~ 85 (98)
..+++|+|||+..+++.+|+|+++++.... ...+...+ ..+++.||+.|++.||+.+.+ ..+|.|+|||+.+++.
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~--~~~~~~~~-~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~ 77 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSR--KEISGYDP-ATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNA 77 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEE--EEEEEEEE-EECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHH
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCee--EEeecCCC-CCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHH
Confidence 468999999999999999999999986533 33333343 458999999999999999876 5899999999999999
Q ss_pred Hhc
Q 042834 86 ARN 88 (98)
Q Consensus 86 l~~ 88 (98)
|++
T Consensus 78 i~~ 80 (146)
T 3h08_A 78 MNE 80 (146)
T ss_dssp HHS
T ss_pred HHH
Confidence 987
No 11
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.60 E-value=2.3e-15 Score=95.17 Aligned_cols=78 Identities=15% Similarity=0.127 Sum_probs=64.5
Q ss_pred ceEEEEecceeecCCCcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEechHHHHHH
Q 042834 6 GWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKEVVDL 85 (98)
Q Consensus 6 g~~k~n~D~s~~~~~~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~ 85 (98)
..+++|+|||+..+++.+|+|+|+++..... ..+...+ ..+++.||+.|++.||+.+.+. .+|.|+|||+.+++.
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~--~~~~~~~-~~tn~~aEl~A~~~AL~~~~~~--~~v~I~tDS~~vi~~ 79 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTK--EMSDGFS-LTTNNRMELLAPIVALEALKEP--CKIILTSDSQYMRQG 79 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTEEE--EEEEEEE-EECHHHHHHHHHHHHHHTCSSC--CEEEEEECCHHHHHH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCEEE--EEecCcC-CCccHHHHHHHHHHHHHHhccC--CeEEEEeCHHHHHHH
Confidence 4689999999999889999999999854322 2333333 3589999999999999998654 899999999999999
Q ss_pred Hhc
Q 042834 86 ARN 88 (98)
Q Consensus 86 l~~ 88 (98)
|++
T Consensus 80 i~~ 82 (158)
T 2e4l_A 80 IMT 82 (158)
T ss_dssp HHT
T ss_pred HHH
Confidence 988
No 12
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.59 E-value=1.4e-15 Score=95.24 Aligned_cols=83 Identities=16% Similarity=0.031 Sum_probs=65.9
Q ss_pred CCCceEEEEecceeecCCCcceEEEEEeCCCccEE-Eee-eeeecc--cCCHHHHHHHHHHHHHHHHHHCCCccEEEEec
Q 042834 3 PPNGWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAV-AAT-VQKVSF--RGDVAYMEAAAVNLGIQVAQNAKFLPIIVESD 78 (98)
Q Consensus 3 P~~g~~k~n~D~s~~~~~~~~g~G~vird~~G~~i-~~~-~~~~~~--~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esD 78 (98)
.+.+.+++|+|||+.. +.+|+|+++++ +|... ... ....+. ..+++.||+.|++.||+++.+.+. +|.|+||
T Consensus 2 ~~~~~i~iytDGs~~~--g~~G~G~vi~~-~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tD 77 (147)
T 2kq2_A 2 DDRTEYDVYTDGSYVN--GQYAWAYAFVK-DGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHD 77 (147)
T ss_dssp CTTSCCEEECCCCCBT--TBCEEEEEEEE-TTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSC
T ss_pred CCCCeEEEEECCCCCC--CCcEEEEEEEE-CCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEEC
Confidence 3567899999999987 89999999998 55532 222 111122 358999999999999999999998 9999999
Q ss_pred hHHHHHHHhcC
Q 042834 79 SKEVVDLARNR 89 (98)
Q Consensus 79 s~~vv~~l~~~ 89 (98)
|+.+.+++++.
T Consensus 78 S~~i~~w~~~~ 88 (147)
T 2kq2_A 78 YAGIAFWATGE 88 (147)
T ss_dssp CSTHHHHTTSS
T ss_pred cHHHHHHHhCC
Confidence 99988887764
No 13
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.58 E-value=1.8e-14 Score=91.89 Aligned_cols=80 Identities=15% Similarity=0.128 Sum_probs=65.2
Q ss_pred CCCCceEEEEecceeecCCCcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEechHH
Q 042834 2 SPPNGWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKE 81 (98)
Q Consensus 2 ~P~~g~~k~n~D~s~~~~~~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~ 81 (98)
|++...+++|+|||+..+++.+|+|+++++. |..+.. . ......+++.||+.|++.||+++ ...+|.|.|||+.
T Consensus 18 P~~~~~i~iytDGs~~~npG~~g~G~vi~~~-~~~~~~-~-~~~~~~Tnn~aEl~Ai~~AL~~~---~~~~v~I~tDS~~ 91 (165)
T 3p1g_A 18 PIPDADYTWYTDGSSFLQEGQRRAGAAVTTE-TEVIWA-R-ALPAGTSAQRAELIALTQALKMA---EGKKLNVYTDSRY 91 (165)
T ss_dssp CCTTCSEEEEEEEEEEEETTEEEEEEEEECS-SCEEEE-E-EECTTCCHHHHHHHHHHHHHHHT---BTSEEEEEECCHH
T ss_pred CCCCCCEEEEEEcccCCCCCceEEEEEEEEC-CEEEEE-e-cCCCCCcHHHHHHHHHHHHHHHc---cCceEEEEEchHH
Confidence 3444469999999999999999999999884 554432 2 33455689999999999999998 3689999999999
Q ss_pred HHHHHh
Q 042834 82 VVDLAR 87 (98)
Q Consensus 82 vv~~l~ 87 (98)
+++.+.
T Consensus 92 vi~~iw 97 (165)
T 3p1g_A 92 AFATAH 97 (165)
T ss_dssp HHHHHH
T ss_pred HHhhhh
Confidence 999884
No 14
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.47 E-value=1.1e-12 Score=83.68 Aligned_cols=82 Identities=20% Similarity=0.109 Sum_probs=63.6
Q ss_pred CceEEEEecceeecCCCc-----ceEEEEEeCCC--ccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEe
Q 042834 5 NGWFKVNVDAAIKLSDQT-----AGLGVIIRDSR--GKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVES 77 (98)
Q Consensus 5 ~g~~k~n~D~s~~~~~~~-----~g~G~vird~~--G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~es 77 (98)
...+.+|||||+..+++. +|+|++++... ..+....... ....+.+.||+.||..+|+.+...+ .+|.|.|
T Consensus 5 ~~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~-tnn~te~~Aei~Al~~al~~al~~~-~~v~I~T 82 (165)
T 2lsn_A 5 QYEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIP-LGNHTAQMAEIAAVEFACKKALKIP-GPVLVIT 82 (165)
T ss_dssp CCSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEE-ESSCCHHHHHHHHHHHHHHHHHHSS-SCEEEEE
T ss_pred CceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCC-chHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEe
Confidence 446789999999998875 89999998543 3333333322 2345788999999999999988876 4799999
Q ss_pred chHHHHHHHhc
Q 042834 78 DSKEVVDLARN 88 (98)
Q Consensus 78 Ds~~vv~~l~~ 88 (98)
||+.|++.++.
T Consensus 83 DS~Yvi~~it~ 93 (165)
T 2lsn_A 83 DSFYVAESANK 93 (165)
T ss_dssp SCHHHHHHHHT
T ss_pred ChHHHHhhhhh
Confidence 99999999974
No 15
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.36 E-value=2.3e-12 Score=94.81 Aligned_cols=78 Identities=21% Similarity=0.212 Sum_probs=65.6
Q ss_pred CCCCceEEEEecceeecCCCcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEechHH
Q 042834 2 SPPNGWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKE 81 (98)
Q Consensus 2 ~P~~g~~k~n~D~s~~~~~~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~ 81 (98)
.|..+.+++++|||+..+++.+|+|+++++.....+ .. ...+++.||+.|++.||+.+ .++|.+.|||+.
T Consensus 434 ep~~~~~~iytDGs~~~n~g~~g~g~v~~~~~~~~~-----~~-~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~ 503 (557)
T 2zd1_A 434 EPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVV-----PL-TNTTNQKTELQAIYLALQDS----GLEVNIVTDSQY 503 (557)
T ss_dssp SCCTTSCEEEEEEEECTTTCCEEEEEEETTSCEEEE-----EE-CSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHH
T ss_pred CCCCCCEEEEEccCCCCCCCceEEEEEEECCcEEEe-----cC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHH
Confidence 366788999999999999999999999986543333 12 34589999999999999998 689999999999
Q ss_pred HHHHHhcC
Q 042834 82 VVDLARNR 89 (98)
Q Consensus 82 vv~~l~~~ 89 (98)
|++.+++.
T Consensus 504 vi~~i~~~ 511 (557)
T 2zd1_A 504 ALGIIQAQ 511 (557)
T ss_dssp HHHHHTTC
T ss_pred HHHHHhcC
Confidence 99999874
No 16
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.34 E-value=4.5e-12 Score=93.23 Aligned_cols=77 Identities=14% Similarity=0.141 Sum_probs=65.3
Q ss_pred CCCCceEEEEecceeecCCCcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEechHH
Q 042834 2 SPPNGWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKE 81 (98)
Q Consensus 2 ~P~~g~~k~n~D~s~~~~~~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~ 81 (98)
.|..+.+++++|||+..+++.+|+|+++++..+.. ... ...+++.||+.|++.||+. +.++|.+.|||+.
T Consensus 431 ~p~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~-----~~~-~~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~ 500 (555)
T 1mu2_A 431 DPIPGAETFYTDGSCNRQSKEGKAGYVTDRGKDKV-----KKL-EQTTNQQAELEAFAMALTD----SGPKVNIIVDSQY 500 (555)
T ss_dssp SCCTTCEEEEEEEEECTTTCCEEEEEEETTSCEEE-----EEE-SSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHH
T ss_pred CCCCCceEEEEcccccCCCCCceEEEEEEeCCEee-----ccC-CCCCHHHHHHHHHHHHHHc----CCCeEEEEEehHH
Confidence 46678899999999999999999999999865431 122 2458999999999999987 6789999999999
Q ss_pred HHHHHhc
Q 042834 82 VVDLARN 88 (98)
Q Consensus 82 vv~~l~~ 88 (98)
|++.+++
T Consensus 501 v~~~i~~ 507 (555)
T 1mu2_A 501 VMGIVAS 507 (555)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999986
No 17
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=94.42 E-value=0.073 Score=32.36 Aligned_cols=57 Identities=16% Similarity=0.153 Sum_probs=42.8
Q ss_pred CcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEec
Q 042834 21 QTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESD 78 (98)
Q Consensus 21 ~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esD 78 (98)
+...+|.++++.+|+++.+.............||..|+..+... -+..+..+.+.+|
T Consensus 22 s~~~VGAal~~~dG~i~~G~Nvena~~~~t~cAE~~Ai~~A~~~-G~~~~~~~~l~~~ 78 (136)
T 1uwz_A 22 SKFQVGAALLTKDGKVYRGCNIENAAYSMCNCAEATALFKAVSE-GDTEFQMLAVAAD 78 (136)
T ss_dssp TCCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHH-TCCCEEEEEEEES
T ss_pred CCCCEEEEEEeCCCeEEEEeCcccCCCCCccCHHHHHHHHHHHC-CCCCeEEEEEEeC
Confidence 45678999999999988655543333334589999999999875 4556788888876
No 18
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=93.58 E-value=0.1 Score=32.20 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=42.0
Q ss_pred CcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEec
Q 042834 21 QTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESD 78 (98)
Q Consensus 21 ~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esD 78 (98)
....+|.++++.+|+++.+...-.....-...||..|+..|... -...+..+.+.+|
T Consensus 34 s~f~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~~~ 90 (146)
T 2fr5_A 34 SRFPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISE-GYKDFRAIAISSD 90 (146)
T ss_dssp TCCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEES
T ss_pred CCCCEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhC-CCCceEEEEEEeC
Confidence 45679999999999988655433322223589999999999875 4556788888877
No 19
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=90.86 E-value=0.32 Score=30.12 Aligned_cols=55 Identities=15% Similarity=0.140 Sum_probs=35.1
Q ss_pred cceEEEEEeCCCccEEEeeeeee-cccCCHHHHHHHHHHHHHHHHHHCCCccEEEEe
Q 042834 22 TAGLGVIIRDSRGKAVAATVQKV-SFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVES 77 (98)
Q Consensus 22 ~~g~G~vird~~G~~i~~~~~~~-~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~es 77 (98)
..-+|.||.+ +|+++..+.... .......+||..||..+.+......+....+++
T Consensus 26 ~~pVGAviv~-~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tlyv 81 (159)
T 2b3j_A 26 EVPIGAIITK-DDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYV 81 (159)
T ss_dssp SCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEE
T ss_pred CCCEEEEEEE-CCEEEEEEECCCCCCCCCccCHHHHHHHHHHHHcCCCCcceeEEEE
Confidence 4567888887 788886444322 112235799999999987754444455555554
No 20
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=90.77 E-value=0.41 Score=28.75 Aligned_cols=55 Identities=7% Similarity=0.026 Sum_probs=40.2
Q ss_pred CcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEec
Q 042834 21 QTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESD 78 (98)
Q Consensus 21 ~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esD 78 (98)
+...+|.++++.+|+++.+...- .......||..|+..+... -+..+..+.+.+|
T Consensus 25 s~f~VGAal~~~dG~i~~G~NvE--~~~~t~cAE~~Ai~~A~~~-G~~~~~~i~vv~~ 79 (130)
T 2z3g_A 25 EDYSVASAALSSDGRIFTGVNVY--HFTGGPCAELVVLGTAAAA-AAGNLTCIVAIGN 79 (130)
T ss_dssp SSSCEEEEEEETTSCEEEEECCC--CTTTCCCHHHHHHHHHHHT-TCCCEEEEEEEET
T ss_pred CCCCEEEEEEecCCeEEEEeccc--cCCcccCHHHHHHHHHHHc-CCCceEEEEEEEC
Confidence 45778999999999988654433 3344689999999988863 3345777777775
No 21
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=90.68 E-value=0.26 Score=29.97 Aligned_cols=54 Identities=11% Similarity=0.182 Sum_probs=33.3
Q ss_pred cceEEEEEeCCCccEEEeeeeee-cccCCHHHHHHHHHHHHHHHHHHCCCccEEEE
Q 042834 22 TAGLGVIIRDSRGKAVAATVQKV-SFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVE 76 (98)
Q Consensus 22 ~~g~G~vird~~G~~i~~~~~~~-~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~e 76 (98)
..-+|.||.+ +|+++..+.... .......+||..||..+.+......+....++
T Consensus 23 ~~~VGAviv~-~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~~~~~tly 77 (144)
T 2a8n_A 23 EVPIGAVLVL-DGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLPGADLY 77 (144)
T ss_dssp SCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTCEEE
T ss_pred CCCEEEEEEE-CCEEEEEEECCCCCCCCCcCCHHHHHHHHHHHHcCCCccCCeEEE
Confidence 4567888887 888885544332 22223579999999998765433334443333
No 22
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=90.32 E-value=0.38 Score=30.51 Aligned_cols=55 Identities=15% Similarity=0.126 Sum_probs=34.2
Q ss_pred cceEEEEEeCCCccEEEeeeeee-cccCCHHHHHHHHHHHHHHHHHHCCCccEEEEe
Q 042834 22 TAGLGVIIRDSRGKAVAATVQKV-SFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVES 77 (98)
Q Consensus 22 ~~g~G~vird~~G~~i~~~~~~~-~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~es 77 (98)
..-+|.||.+ +|+++..+.... .......+||..||..+-+......+....+++
T Consensus 35 ~~pVGAVIV~-~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~~~~~l~g~tlYv 90 (179)
T 2nx8_A 35 EIPIGCVIVK-DGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTTLFV 90 (179)
T ss_dssp SCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEE
T ss_pred CCCEEEEEEE-CCEEEEEEECCCCCcCCCccCHHHHHHHHHHHHcCCCcccceEEEE
Confidence 4567788876 788886554332 222235799999999987654333444444443
No 23
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=89.84 E-value=0.48 Score=29.83 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=36.3
Q ss_pred CcceEEEEEeCCCccEEEeeeee-ecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEe
Q 042834 21 QTAGLGVIIRDSRGKAVAATVQK-VSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVES 77 (98)
Q Consensus 21 ~~~g~G~vird~~G~~i~~~~~~-~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~es 77 (98)
+..-+|.||.+ +|+++..+... ........+||..||..+.+......+....+++
T Consensus 41 ~~~pVGAvIV~-dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~g~~~l~~~tlYv 97 (171)
T 1wwr_A 41 GEVPVGAIIVK-EGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYV 97 (171)
T ss_dssp TSCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTEEEEE
T ss_pred CCCCEEEEEEE-CCEEEEEEECCCCccCCcccCHHHHHHHHHHHHcCCCccCceEEEE
Confidence 35567888887 89888644432 2222235799999999887754444556666664
No 24
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=88.50 E-value=0.77 Score=27.98 Aligned_cols=57 Identities=9% Similarity=0.065 Sum_probs=39.7
Q ss_pred CcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCC-CccEEEEec
Q 042834 21 QTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAK-FLPIIVESD 78 (98)
Q Consensus 21 ~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g-~~~v~~esD 78 (98)
....+|..+++.+|++..+...-.......+.||-.|+..+...- ... +..+.+-+|
T Consensus 30 S~f~VGAAl~~~dG~i~~G~NvEnasy~~t~cAEr~Ai~~a~~~G-~~~~i~~i~vv~~ 87 (142)
T 1r5t_A 30 SHFRVGCSILTNNDVIFTGANVENASYSNCICAERSAMIQVLMAG-HRSGWKCMVICGD 87 (142)
T ss_dssp TCCCEEEEEECTTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCSCCCEEEEEES
T ss_pred CCCCEEEEEEeCCCCEEEEEeecccCCCCCcCHHHHHHHHHHHcC-CCCceEEEEEEeC
Confidence 466789999999999887654333233345889999998887642 223 677777765
No 25
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=87.99 E-value=0.78 Score=28.00 Aligned_cols=66 Identities=15% Similarity=0.166 Sum_probs=45.7
Q ss_pred CcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEec----------hHHHHHHHh
Q 042834 21 QTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESD----------SKEVVDLAR 87 (98)
Q Consensus 21 ~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esD----------s~~vv~~l~ 87 (98)
....+|..+++.+|++..+...-.......+.||..|+..+..- -+..+..|.+-+| |.+++.-+.
T Consensus 31 S~f~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Avs~-G~~~~~aiav~~~~~~~~~PCG~CRQ~l~E~~ 106 (141)
T 2d30_A 31 SKFQVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSE-GDKEFVAIAIVADTKRPVPPCGACRQVMVELC 106 (141)
T ss_dssp TCCCEEEEEEETTCCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESCSSCCCCCHHHHHHHHHHS
T ss_pred CCCcEEEEEEeCCCCEEEeeccccCCCCcccCHHHHHHHHHHHC-CCCceEEEEEEeCCCCccCcCHHHHHHHHHhc
Confidence 45678999999999888765533323334588999999888864 3345678888765 555665554
No 26
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=87.63 E-value=0.55 Score=29.40 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=32.5
Q ss_pred cceEEEEEeCCCccEEEeeeee-ecccCCHHHHHHHHHHHHHHHHHHCCCccEEEE
Q 042834 22 TAGLGVIIRDSRGKAVAATVQK-VSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVE 76 (98)
Q Consensus 22 ~~g~G~vird~~G~~i~~~~~~-~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~e 76 (98)
..-+|.||.+ +|+++..+... ........+||..||..+-+......+....++
T Consensus 28 ~~pVGAviV~-~g~Ii~~G~N~~~~~~d~t~HAE~~Ai~~a~~~~~~~~l~~~tlY 82 (168)
T 1z3a_A 28 EVPVGAVLVH-NNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLY 82 (168)
T ss_dssp SCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTCEEE
T ss_pred CCcEEEEEEE-CCEEEEEEEcccccCCCcchhHHHHHHHHHHHHcCCCcccccEEE
Confidence 4457788874 78888654433 222223479999999988765433333333333
No 27
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=86.86 E-value=0.84 Score=28.48 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=31.1
Q ss_pred ceEEEEEeCCCccEEEeeeeeec-ccCCHHHHHHHHHHHHHHHHHHCCCccEEEE
Q 042834 23 AGLGVIIRDSRGKAVAATVQKVS-FRGDVAYMEAAAVNLGIQVAQNAKFLPIIVE 76 (98)
Q Consensus 23 ~g~G~vird~~G~~i~~~~~~~~-~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~e 76 (98)
.-+|.||.+ +|+++..+..... ......+||..||+.+-+......+....++
T Consensus 32 ~pVGAVIV~-~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~a~~~~~~~~l~g~tlY 85 (164)
T 1wkq_A 32 GPFGAVIVK-DGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILY 85 (164)
T ss_dssp SSCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSSCTTEEEE
T ss_pred CCEEEEEEE-CCEEEEEEecCCcCCCCcccCHHHHHHHHHHHHcCCCCcCceEEE
Confidence 346667664 7888865544322 2223579999999988764333333333333
No 28
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=86.47 E-value=0.82 Score=29.21 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=29.5
Q ss_pred ceEEEEEeCCCccEEEeeeeee-cccCCHHHHHHHHHHHHHHHHHH
Q 042834 23 AGLGVIIRDSRGKAVAATVQKV-SFRGDVAYMEAAAVNLGIQVAQN 67 (98)
Q Consensus 23 ~g~G~vird~~G~~i~~~~~~~-~~~~~~~~aE~~Al~~aL~~a~~ 67 (98)
.-+|+||-+ +|++|..+.... .......+||..||..+.+.+..
T Consensus 46 ~pVGAVIV~-~g~IIa~G~N~~~~~~~~t~HAEi~AI~~a~~~~~~ 90 (189)
T 3dh1_A 46 VPVGCLMVY-NNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQ 90 (189)
T ss_dssp CCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEE-CCEEEEEEeCCCCccCCCcCcHHHHHHHHHHHHHhh
Confidence 446777776 688887655431 11234579999999998876543
No 29
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=86.13 E-value=0.61 Score=29.51 Aligned_cols=40 Identities=18% Similarity=0.096 Sum_probs=27.5
Q ss_pred cceEEEEEeCCCccEEEeeeeeec-cc-----------CCH--------HHHHHHHHHHH
Q 042834 22 TAGLGVIIRDSRGKAVAATVQKVS-FR-----------GDV--------AYMEAAAVNLG 61 (98)
Q Consensus 22 ~~g~G~vird~~G~~i~~~~~~~~-~~-----------~~~--------~~aE~~Al~~a 61 (98)
..-+|.||.+.+|+++..+..... .+ .++ .+||..||+.+
T Consensus 31 ~~~VGAvIV~~dg~Iia~G~N~~~~~~~d~~~~~~~~~g~p~~~~~~~t~HAE~~AI~~a 90 (178)
T 2w4l_A 31 NSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYPYVCHAELNAIMNK 90 (178)
T ss_dssp SCCCEEEEECTTSCEEEEEESBCCTTCCTTTSCCCSCCSSGGGSSTTTCBCHHHHHHHC-
T ss_pred CCCEEEEEEecCCEEEEEEECCCCcCccccccccccccCCccccccCCcCCHHHHHHHHh
Confidence 456899999889999865544322 11 233 79999999875
No 30
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=85.79 E-value=3.6 Score=29.20 Aligned_cols=79 Identities=5% Similarity=-0.189 Sum_probs=49.8
Q ss_pred CCceEEEEecceeecCCCcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHH-HHHHHHHHHH--CC--CccEEEEec
Q 042834 4 PNGWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAA-VNLGIQVAQN--AK--FLPIIVESD 78 (98)
Q Consensus 4 ~~g~~k~n~D~s~~~~~~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~A-l~~aL~~a~~--~g--~~~v~~esD 78 (98)
+..-+.+.+|+|- .+.+|.|+..+.|....++.-.-.......+-|.+| +..+|+--+. .| ...+++.||
T Consensus 321 ~~~~~~l~~das~-----~g~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~G~~~~~~i~~td 395 (428)
T 2zd1_B 321 PSKDLIAEIQKQG-----QGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQK 395 (428)
T ss_dssp TTSCCEEEEEEEE-----TTEEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCEEEESSCH
T ss_pred CCCCEEEEEecCC-----CCcEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEEECCCCcEECCccH
Confidence 3445678899883 346788887776654433332233334566788888 9999875432 23 356788899
Q ss_pred hHHHHHHHh
Q 042834 79 SKEVVDLAR 87 (98)
Q Consensus 79 s~~vv~~l~ 87 (98)
.+.+.-...
T Consensus 396 ~~~~~~~~~ 404 (428)
T 2zd1_B 396 ETWETWWTE 404 (428)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 988654443
No 31
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=84.58 E-value=0.72 Score=28.61 Aligned_cols=42 Identities=7% Similarity=-0.054 Sum_probs=28.8
Q ss_pred cceEEEEEe-CCCccEEEeeeeeec-ccCCHHHHHHHHHHHHHH
Q 042834 22 TAGLGVIIR-DSRGKAVAATVQKVS-FRGDVAYMEAAAVNLGIQ 63 (98)
Q Consensus 22 ~~g~G~vir-d~~G~~i~~~~~~~~-~~~~~~~aE~~Al~~aL~ 63 (98)
..-+|.||. +.+|+++..+..... ......+||..||..+.+
T Consensus 33 ~~pVGAviVd~~~g~Ii~~G~N~~~~~~~~t~HAE~~Ai~~a~~ 76 (161)
T 1p6o_A 33 GVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGR 76 (161)
T ss_dssp SCCCEEEEEETTTCCEEEEEECCHHHHTCSSCCHHHHHHHHHCS
T ss_pred CCCEEEEEEEecCCEEEEEEECCCCCCCCcccCHHHHHHHHHHH
Confidence 456899999 588999865544322 122247999999988754
No 32
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=84.08 E-value=1.1 Score=27.20 Aligned_cols=66 Identities=8% Similarity=0.074 Sum_probs=45.0
Q ss_pred CcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEec----------hHHHHHHHh
Q 042834 21 QTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESD----------SKEVVDLAR 87 (98)
Q Consensus 21 ~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esD----------s~~vv~~l~ 87 (98)
....+|.+++..+|++..+...-.......+.||..|+..+...- +..+..|.+-+| |.+++.-+.
T Consensus 29 S~f~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Av~~G-~~~i~aiav~~~~~~~~~PCG~CRQ~l~E~~ 104 (138)
T 3r2n_A 29 SNFPVGVAGFVNDGRLITGVNVENASYGLALCAECSMISALYATG-GGRLVAVYCVDGNGDSLMPCGRCRQLLYEHG 104 (138)
T ss_dssp TCCCCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEECTTSCBCCCCHHHHHHHHHHH
T ss_pred CCCcEEEEEEeCCCcEEEEEcccccCCCCCcCHHHHHHHHHHHcC-CCceEEEEEEcCCCCcCCCCHHHHHHHHHhC
Confidence 456789999999999987665433333345789999999887642 345666666654 556655554
No 33
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=82.67 E-value=2.8 Score=26.81 Aligned_cols=42 Identities=21% Similarity=0.177 Sum_probs=29.1
Q ss_pred eEEEEEeCCC-ccEEEeeeeeec-ccCCHHHHHHHHHHHHHHHH
Q 042834 24 GLGVIIRDSR-GKAVAATVQKVS-FRGDVAYMEAAAVNLGIQVA 65 (98)
Q Consensus 24 g~G~vird~~-G~~i~~~~~~~~-~~~~~~~aE~~Al~~aL~~a 65 (98)
-+|.||.+.+ |+++..+..... ......+||..||..+-+..
T Consensus 49 PvGAVIV~~~~g~Iia~G~N~~~~~~~~~~HAE~~Ai~~a~~~~ 92 (197)
T 2g84_A 49 PFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAKL 92 (197)
T ss_dssp SCEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHHHHHHH
T ss_pred CEEEEEEEcCCCEEEEEEECCCCccCCCccCHHHHHHHHHHHHc
Confidence 3588888866 999876654321 22345799999999876643
No 34
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=82.29 E-value=1.5 Score=27.15 Aligned_cols=57 Identities=12% Similarity=0.005 Sum_probs=40.2
Q ss_pred CcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEec
Q 042834 21 QTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESD 78 (98)
Q Consensus 21 ~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esD 78 (98)
....+|..++..+|++..+...-.......+-||-.|+..++.- -+..+..|.+-+|
T Consensus 44 S~F~VGAAll~~dG~i~tG~NvEnasy~~t~CAEr~Ai~~Avs~-G~~~i~aiavv~~ 100 (150)
T 3mpz_A 44 SGFPVGAAALVDDGRTVTGCNVENVSYGLGLCAECAVVCALHSG-GGGRLVALSCVGP 100 (150)
T ss_dssp TCCCCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEECT
T ss_pred CCCCEEEEEEeCCCCEEEEEecccccCCccccHHHHHHHHHHHc-CCCceEEEEEEcC
Confidence 45678999999999998766544333334578999999888864 2345666666654
No 35
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=79.83 E-value=0.31 Score=34.78 Aligned_cols=78 Identities=19% Similarity=0.167 Sum_probs=48.5
Q ss_pred eEEEEecceeecCCCcceEEEEEeCCC--ccEEEeeeeeec---ccCCHHHHHHHHHHHHHHHHHH-CCCccEEEEechH
Q 042834 7 WFKVNVDAAIKLSDQTAGLGVIIRDSR--GKAVAATVQKVS---FRGDVAYMEAAAVNLGIQVAQN-AKFLPIIVESDSK 80 (98)
Q Consensus 7 ~~k~n~D~s~~~~~~~~g~G~vird~~--G~~i~~~~~~~~---~~~~~~~aE~~Al~~aL~~a~~-~g~~~v~~esDs~ 80 (98)
-+.+++|+|-.. .| |++.+..+ ++.+.-.++.+. ...+..+.|++|+..|++..+. +.-+++.+.||..
T Consensus 346 ~~~l~~DAS~~~----~g-avL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh~ 420 (455)
T 1rw3_A 346 PFELFVDEKQGY----AK-GVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA 420 (455)
T ss_dssp TTSCEEEEEECS----SS-BEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC
T ss_pred cEEEEEeccCCc----ce-eEEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecCh
Confidence 345788986421 11 23444333 334444444332 2345678999999999988765 4447999999997
Q ss_pred HHHHHHhcCC
Q 042834 81 EVVDLARNRN 90 (98)
Q Consensus 81 ~vv~~l~~~~ 90 (98)
+...++++.
T Consensus 421 -~~~~l~~~~ 429 (455)
T 1rw3_A 421 -VEALVKQPP 429 (455)
T ss_dssp -TTTTSSSTT
T ss_pred -HHHHhCCCc
Confidence 666666654
No 36
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=76.02 E-value=2.1 Score=26.02 Aligned_cols=53 Identities=19% Similarity=0.129 Sum_probs=36.5
Q ss_pred eEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEe
Q 042834 24 GLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVES 77 (98)
Q Consensus 24 g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~es 77 (98)
.+|..++..+|+++.+...-.......+.||..|+..+..- -...+..+.+-+
T Consensus 24 ~VGAAl~~~dG~i~~G~NvEnas~~~~lcAEr~Ai~~a~~~-G~~~~~~~~v~~ 76 (142)
T 3b8f_A 24 GGAAAIRVEDGTIYTSVAPDVINASTELCMETGAILEAHKF-QKKVTHSICLAR 76 (142)
T ss_dssp EEEEEEEETTSCEEEECCCCCSSGGGCCCTTHHHHHHHHHH-TCCEEEEEEEEE
T ss_pred CEEEEEEeCCCcEEEEECcccccCCcccCHHHHHHHHHHHC-CCCcEEEEEEEe
Confidence 88999999999988765543433334689999999988863 122345556654
No 37
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=74.41 E-value=8.9 Score=23.77 Aligned_cols=62 Identities=8% Similarity=0.086 Sum_probs=42.7
Q ss_pred ceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEec-----------hHHHHHHHh
Q 042834 23 AGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESD-----------SKEVVDLAR 87 (98)
Q Consensus 23 ~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esD-----------s~~vv~~l~ 87 (98)
..+|..++..+|++..+... ...+.-+-||-.|+..++.- -...+..+.+-++ |.+++.-+.
T Consensus 51 f~VGAAll~~dG~i~tG~NV--En~~~~lCAEr~Ai~~Avs~-G~~~~~ai~vv~~~~~~~~~PCG~CRQvL~Ef~ 123 (158)
T 3oj6_A 51 YSVASAAISDDGRVFSGVNV--YHFNGGPCAELVVLGVAAAA-GATKLTHIVAIANEGRGILSPCGRCRQVLADLH 123 (158)
T ss_dssp SCEEEEEEETTSCEEEEECC--CCTTTCCCHHHHHHHHHHHT-TCCCEEEEEEEETTTTEEECCCHHHHHHHHHHS
T ss_pred CcEEEEEEeCCCCEEEEEcc--ccCCccccHHHHHHHHHHHh-CCCceEEEEEEeCCCCCcCCCCHHHHHHHHHhC
Confidence 57899999999998876654 23445578999988887742 1233455556555 777777664
No 38
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A
Probab=74.34 E-value=13 Score=24.04 Aligned_cols=52 Identities=19% Similarity=0.165 Sum_probs=36.9
Q ss_pred eecCCCcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCC
Q 042834 16 IKLSDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAK 69 (98)
Q Consensus 16 ~~~~~~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g 69 (98)
+....+...=|.+|.|.+|.+.......... ..+..|++-.+.|||++...|
T Consensus 139 ~~~~~g~~~R~tFiIDp~g~Ir~~~~~~~~~--gr~~~EvLr~l~aLQ~~~~~~ 190 (219)
T 3tue_A 139 LEESQGVAYRGLFIIDPHGMLRQITVNDMPV--GRSVEEVLRLLEAFQFVEKHG 190 (219)
T ss_dssp EETTTTEECEEEEEECTTSBEEEEEEECTTC--CCCHHHHHHHHHHHHHHHHC-
T ss_pred cccCCCeeEEEEEEECCCCeEEEEEEecCCC--CCCHHHHHHHHHHhhhHHhcC
Confidence 3344455556889999999987766543332 346789999999999987765
No 39
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=73.68 E-value=4.8 Score=24.42 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=46.2
Q ss_pred CcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHC--CCccEEEEec----------hHHHHHHHhc
Q 042834 21 QTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNA--KFLPIIVESD----------SKEVVDLARN 88 (98)
Q Consensus 21 ~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~--g~~~v~~esD----------s~~vv~~l~~ 88 (98)
....+|..++..+|++..+...-......-+-||-.|+..++.-- +. .+..|.+-+| |.+++.-+..
T Consensus 30 S~F~VGAAll~~dG~iytG~NVEnasy~~t~CAEr~Ai~~Avs~G-~~~~~i~aiavv~~~~~~~~PCG~CRQ~l~Ef~~ 108 (138)
T 3dmo_A 30 SNFKVGAALVTNDGKVFHGCNVENASYGLCNCAERTALFSALAAG-YRPGEFAAIAVVGETHGPIAPCGACRQVMIELGK 108 (138)
T ss_dssp TCCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCTTCEEEEEEEESCSSSCCCCHHHHHHHHHHHC
T ss_pred CCCCEEEEEEeCCCCEEEEEeecccccccccCHHHHHHHHHHHcC-CCcccEEEEEEEcCCCCccCCCHHHHHHHHHhCC
Confidence 466789999999999988765433333345789999998887531 22 4667777755 6666666653
No 40
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=69.98 E-value=11 Score=23.81 Aligned_cols=41 Identities=12% Similarity=0.018 Sum_probs=26.4
Q ss_pred cceEEEEEeCCCccEEEeeeeeecc----------------cCCHHHHHHHHHHHHHH
Q 042834 22 TAGLGVIIRDSRGKAVAATVQKVSF----------------RGDVAYMEAAAVNLGIQ 63 (98)
Q Consensus 22 ~~g~G~vird~~G~~i~~~~~~~~~----------------~~~~~~aE~~Al~~aL~ 63 (98)
..-+|.||.+ +|+++..+...... .....+||..||..+.+
T Consensus 60 ~~~VGAVIV~-dg~Iia~G~N~~~~~~~~c~d~g~~~~~~~~~~t~HAE~~AI~~A~~ 116 (184)
T 2hvw_A 60 RAYVGAVLVK-NNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAK 116 (184)
T ss_dssp TCCCEEEEEE-TTEEEEEEECEESTTSCCHHHHCCCEETTEECSEECHHHHHHHHHHH
T ss_pred CCCEEEEEEE-CCEEEEEEECCCcccccccccccccccccccCCccCHHHHHHHHHHH
Confidence 4557777776 78888654433221 11247999999988754
No 41
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=67.19 E-value=20 Score=23.10 Aligned_cols=49 Identities=18% Similarity=0.161 Sum_probs=35.7
Q ss_pred CCCcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCC
Q 042834 19 SDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAK 69 (98)
Q Consensus 19 ~~~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g 69 (98)
..+.+-=|.+|.|.+|.+.......... -.+.-|++-++.|||+....|
T Consensus 138 ~~g~~~R~tFiID~~G~Ir~~~v~~~~~--grn~dEiLr~l~AlQ~~~~~~ 186 (216)
T 3sbc_A 138 EEGVALRGLFIIDPKGVIRHITINDLPV--GRNVDEALRLVEAFQWTDKNG 186 (216)
T ss_dssp TTTEECEEEEEECTTSBEEEEEEECTTB--CCCHHHHHHHHHHHHHHHHHC
T ss_pred cCCceeeEEEEECCCCeEEEEEEcCCCC--CCCHHHHHHHHHHhhhHhhcC
Confidence 3344455789999999987765443332 346789999999999987654
No 42
>3qb8_A A654L protein; GNAT N-acetyltransferase, acetyltransferase, COA, spermine, spermidine, transferase; HET: COA; 1.50A {Paramecium bursaria chlorella virus 1}
Probab=60.89 E-value=20 Score=21.05 Aligned_cols=35 Identities=9% Similarity=0.046 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHCCCccEEEEechHHHHHHHhcCCC
Q 042834 57 AVNLGIQVAQNAKFLPIIVESDSKEVVDLARNRNC 91 (98)
Q Consensus 57 Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~~~~~ 91 (98)
.+..+++++.+.|+..+.+++++........+.++
T Consensus 128 Ll~~~~~~a~~~g~~~i~l~~~n~~a~~~y~k~GF 162 (197)
T 3qb8_A 128 LLKKTIEESSSHGFKYIYGDCTNIISQNMFEKHGF 162 (197)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHCCC
Confidence 35567888999999999999988888888877664
No 43
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=58.92 E-value=44 Score=23.47 Aligned_cols=63 Identities=8% Similarity=0.099 Sum_probs=39.5
Q ss_pred cceEEEEEeCCC---c-----cEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEechHHHHHH
Q 042834 22 TAGLGVIIRDSR---G-----KAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKEVVDL 85 (98)
Q Consensus 22 ~~g~G~vird~~---G-----~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~ 85 (98)
..-+|-++|++. | +|.......+.. .++..+|+..+..+.+....+|+.++.++..+..+++.
T Consensus 107 ~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~-~~~~~aDaEvi~l~~~~l~~lgl~~~~i~i~~~~~~~~ 177 (464)
T 4g84_A 107 RYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGN-FDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDG 177 (464)
T ss_dssp EEEEEEEECCCC------CCSEEEEEEEEEESC-CSTTHHHHHHHHHHHHHHHHHTCCCEEEEEEEHHHHHH
T ss_pred eEEEecceeccCCccccCccceeeecceeccCC-ccchhhHHHHHHHHHHHHHHhCCCCcceeecchhhHHH
Confidence 456788888754 1 344444443432 35555666666677888889999888887766544443
No 44
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=57.86 E-value=25 Score=23.07 Aligned_cols=47 Identities=6% Similarity=-0.046 Sum_probs=29.1
Q ss_pred EEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEe
Q 042834 28 IIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVES 77 (98)
Q Consensus 28 vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~es 77 (98)
+|-|-+|+|-... -++. ..-+.+=+.++...++++.++|+..+.++.
T Consensus 12 iIMDGNrRwAk~r--gl~r-~~GH~~G~~~~~~i~~~c~~lGI~~lTlYa 58 (225)
T 3ugs_B 12 VVMDGNRRWARAK--GFLA-KLGYSQGVKTMQKLMEVCMEENISNLSLFA 58 (225)
T ss_dssp EEECCCC-----------------CHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EeccCcHHHHHHC--CCCH-HHHHHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 5779889884432 2333 356777889999999999999999988764
No 45
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=57.60 E-value=10 Score=25.89 Aligned_cols=58 Identities=9% Similarity=-0.000 Sum_probs=40.3
Q ss_pred cceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHH-HCCCccEEEEech
Q 042834 22 TAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQ-NAKFLPIIVESDS 79 (98)
Q Consensus 22 ~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~-~~g~~~v~~esDs 79 (98)
...+|..+++.+|++..+...-.......+.||-.|+..+..--. ...+..+.+-+|.
T Consensus 208 ~f~VGAAl~~~dG~i~tG~NvEnasy~~tlCAEr~Ai~~av~~G~~~~~i~~i~vv~~~ 266 (294)
T 1ctt_A 208 KSPSGVALECKDGRIFSGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKA 266 (294)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCTTSTTCBCHHHHHHHHHHHTTCCGGGEEEEEEEECT
T ss_pred CCceEEEEEeCCCCEEEEEeeecCCCCCccCHHHHHHHHHHHcCCCcCCEEEEEEEecC
Confidence 667899999999988776654443444568899999888875311 1236677777764
No 46
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=54.99 E-value=12 Score=15.88 Aligned_cols=21 Identities=0% Similarity=-0.088 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCC.
Q 042834 50 VAYMEAAAVNLGIQVAQNAKF. 70 (98)
Q Consensus 50 ~~~aE~~Al~~aL~~a~~~g~. 70 (98)
+..||.+.+.+.-++++..|+
T Consensus 5 p~IAe~M~~~~Vk~fvR~~gi. 25 (25)
T 3ewt_E 5 TTIAGVMTLSQVKGFVRKNGVx 26 (26)
T ss_pred hHHHHHHhHHHHHHHHHHcCC.
Confidence 467999999999999988764
No 47
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=54.58 E-value=8.5 Score=26.72 Aligned_cols=36 Identities=14% Similarity=0.189 Sum_probs=25.5
Q ss_pred ceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHH
Q 042834 23 AGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGI 62 (98)
Q Consensus 23 ~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL 62 (98)
.-+|+||-+ +|+++..+..... ...+||..||+.+-
T Consensus 36 ~~vGaviv~-~g~ii~~g~n~~~---~~~HAE~~Ai~~a~ 71 (360)
T 2hxv_A 36 PPVGAVVVK-DGRIIAEGFHPYF---GGPHAERMAIESAR 71 (360)
T ss_dssp CCCEEEEEE-TTEEEEEEECCST---TSCCHHHHHHHHHH
T ss_pred CCEEEEEEE-CCEEEEEEeCCCC---CCcCHHHHHHHHHH
Confidence 346777775 7888876654432 34699999999884
No 48
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=53.89 E-value=11 Score=26.31 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=26.2
Q ss_pred cceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHH
Q 042834 22 TAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGI 62 (98)
Q Consensus 22 ~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL 62 (98)
..-+|+||-+ +|+++..+..... ...+||..||..+-
T Consensus 35 ~~~vGaviv~-~g~ii~~g~n~~~---~~~HAE~~Ai~~a~ 71 (373)
T 2b3z_A 35 NPLVGAVVVK-DGQIVGMGAHLKY---GEAHAEVHAIHMAG 71 (373)
T ss_dssp SCCCEEEEES-SSSEEEEEECCST---TSCCHHHHHHHHHG
T ss_pred CCcEEEEEEE-CCEEEEEEeCCCC---CCcCHHHHHHHHhh
Confidence 3456778776 7888876654432 35699999998863
No 49
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=52.97 E-value=48 Score=23.87 Aligned_cols=64 Identities=9% Similarity=0.145 Sum_probs=39.3
Q ss_pred CcceEEEEEeCCC-----c---cEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEechHHHHHH
Q 042834 21 QTAGLGVIIRDSR-----G---KAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKEVVDL 85 (98)
Q Consensus 21 ~~~g~G~vird~~-----G---~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~ 85 (98)
+..-+|-|+|++. | +|.......+.. .++..+|+..+..+.+....+|+.++.++.-+..+++.
T Consensus 159 k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~-~~~~~aDaEvi~l~~~~l~~lgl~~~~i~in~~~~l~~ 230 (517)
T 4g85_A 159 KRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGN-FDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDG 230 (517)
T ss_dssp EEEEEEEEECCCC-------CCEEEEEEEEEESC-CCTTHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHH
T ss_pred eeEEEeceEeccCcccccCccceeeeeceeccCC-ccchHHHHHHHHHHHHHHHhhcCCcccccccchhhHHH
Confidence 3456788888754 2 233333333332 35555566666677788889999888887766544443
No 50
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*
Probab=49.62 E-value=11 Score=26.52 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=25.4
Q ss_pred ceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHH
Q 042834 23 AGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLG 61 (98)
Q Consensus 23 ~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~a 61 (98)
.-+|+||-+ +|+++..+..... ...+||..||..+
T Consensus 52 ~~vGaviv~-~g~ii~~g~n~~~---g~~HAE~~Ai~~a 86 (402)
T 2g6v_A 52 PNVGCVIVK-DGEIVGEGYHQRA---GEPHAEVHALRMA 86 (402)
T ss_dssp CCCEEEEEE-TTEEEEEEECCCT---TSCCHHHHHHHHH
T ss_pred CCEEEEEEE-CCEEEEEEeCCCC---CccHHHHHHHHHh
Confidence 357778876 7888876655432 3579999999876
No 51
>2g3a_A Acetyltransferase; structural genomics, PSI, protein structu initiative, midwest center for structural genomics, MCSG; 1.90A {Agrobacterium tumefaciens str} SCOP: d.108.1.1
Probab=48.06 E-value=32 Score=19.30 Aligned_cols=33 Identities=3% Similarity=0.088 Sum_probs=24.9
Q ss_pred HHHHHHHHHHCCCccEEEEechHHHHHHHhcCC
Q 042834 58 VNLGIQVAQNAKFLPIIVESDSKEVVDLARNRN 90 (98)
Q Consensus 58 l~~aL~~a~~~g~~~v~~esDs~~vv~~l~~~~ 90 (98)
+...++++.+.|...+.+++++........+.+
T Consensus 97 l~~~~~~~~~~g~~~i~l~~~n~~a~~~y~k~G 129 (152)
T 2g3a_A 97 LAMAEEEARKRGCMGAYIDTMNPDALRTYERYG 129 (152)
T ss_dssp HHHHHHHHHHTTCCEEEEEESCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCEEEEEecCccHHHHHHHCC
Confidence 456778888999999999998666666665544
No 52
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=47.60 E-value=16 Score=23.00 Aligned_cols=14 Identities=14% Similarity=0.059 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHH
Q 042834 50 VAYMEAAAVNLGIQ 63 (98)
Q Consensus 50 ~~~aE~~Al~~aL~ 63 (98)
..+||..||+.+-+
T Consensus 102 ~~HAE~~AI~~a~~ 115 (193)
T 1vq2_A 102 EIHAELNAILFAAE 115 (193)
T ss_dssp CBCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh
Confidence 35899999988754
No 53
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=46.15 E-value=8.9 Score=25.67 Aligned_cols=53 Identities=15% Similarity=0.110 Sum_probs=38.4
Q ss_pred ceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEech
Q 042834 23 AGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDS 79 (98)
Q Consensus 23 ~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs 79 (98)
..+| +|-|-+|+|- ...-++. ..-+.+-+.++...++++.++|+..|.++.-|
T Consensus 26 ~HVA-iIMDGN~RwA--k~rgl~r-~~GH~~G~~~~~~iv~~c~~lGI~~lTlYaFS 78 (256)
T 4h8e_A 26 EHIA-IIMDGNGRWA--KKRKMPR-IKGHYEGMQTIKKITRIASDIGVKYLTLYAFS 78 (256)
T ss_dssp SEEE-EECCCHHHHH--HHTTCCH-HHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEE
T ss_pred CEEE-EEcCCCHHHH--HHCCCCH-HHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEc
Confidence 3444 4778888762 2222332 24577778899999999999999999998875
No 54
>2hjj_A Hypothetical protein YKFF; northeast structural genomics consortium (NESG), PROT structure initiative., PSI-2, structural genomics, unknown; NMR {Escherichia coli} SCOP: d.50.3.3
Probab=45.32 E-value=29 Score=19.21 Aligned_cols=24 Identities=25% Similarity=0.464 Sum_probs=19.3
Q ss_pred CCCcceEEEEEeCCCccEEEeeee
Q 042834 19 SDQTAGLGVIIRDSRGKAVAATVQ 42 (98)
Q Consensus 19 ~~~~~g~G~vird~~G~~i~~~~~ 42 (98)
+....-+-.||||.+|+.+.....
T Consensus 31 DDqG~HFRlVVR~~eg~mvWR~wn 54 (87)
T 2hjj_A 31 DDQGSHFRLVVRDTEGRMVWRAWN 54 (87)
T ss_dssp SCSSSCCEEEEECSSCCEEEEEES
T ss_pred cCCCCeEEEEEEcCCCcEEEEeec
Confidence 455677889999999999886654
No 55
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=42.97 E-value=25 Score=23.89 Aligned_cols=43 Identities=14% Similarity=0.060 Sum_probs=30.7
Q ss_pred CcceEEEEEeCCCccEEEeeeeeecc--cCCHHHHHHHHHHHHHH
Q 042834 21 QTAGLGVIIRDSRGKAVAATVQKVSF--RGDVAYMEAAAVNLGIQ 63 (98)
Q Consensus 21 ~~~g~G~vird~~G~~i~~~~~~~~~--~~~~~~aE~~Al~~aL~ 63 (98)
....+|.+++..+|++..+...-... ..-...||..|+..+..
T Consensus 69 S~f~VGAall~~dG~i~~G~NvEnas~~~~~t~CAEr~Ai~~A~~ 113 (294)
T 1ctt_A 69 SNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWL 113 (294)
T ss_dssp TCCCCEEEEEETTSCEEEEECBCCTTSCGGGCBCHHHHHHHHHHH
T ss_pred CCCcEEEEEEeCCCCEEEEEcCCccCccCCCccCHHHHHHHHHHH
Confidence 46678999999999988765532221 11247999999988875
No 56
>4g5a_A Uncharacterized protein; immunoglobulin - like beta-sandwich, structural genomics, JO center for structural genomics, JCSG; 1.69A {Bacteroides thetaiotaomicron}
Probab=38.55 E-value=17 Score=20.03 Aligned_cols=37 Identities=30% Similarity=0.365 Sum_probs=22.2
Q ss_pred CCCCceEEEEecceeec-----CCCcceEEEEEeCCCccEEE
Q 042834 2 SPPNGWFKVNVDAAIKL-----SDQTAGLGVIIRDSRGKAVA 38 (98)
Q Consensus 2 ~P~~g~~k~n~D~s~~~-----~~~~~g~G~vird~~G~~i~ 38 (98)
|-.+.|+|+++|--... .++.+-+-+=+.|-+.+.++
T Consensus 17 ~vdpewlkvyvddesk~l~lnfkd~fa~i~vevkdiekqiv~ 58 (99)
T 4g5a_A 17 PVDPEWLKVYVDDESKRLCLNFKDSFAPITVEVKDIEKQIVF 58 (99)
T ss_dssp CCCTTSEEEEEETTTTEEEEEESSCCCCEEEEEECTTSCEEE
T ss_pred cCChHHeEEEEcCccceeEEecccccccEEEEeeehhheeee
Confidence 45688999999854321 23444555555665555554
No 57
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=37.72 E-value=74 Score=23.15 Aligned_cols=77 Identities=4% Similarity=-0.206 Sum_probs=41.3
Q ss_pred CceEEEEecceeecCCCcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHH-HHHHHHHHHH--CCC-ccEEE-Eech
Q 042834 5 NGWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAA-VNLGIQVAQN--AKF-LPIIV-ESDS 79 (98)
Q Consensus 5 ~g~~k~n~D~s~~~~~~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~A-l~~aL~~a~~--~g~-~~v~~-esDs 79 (98)
.--+.+.+|+|- .+.+|.|+..+.+.........-.......+-|++| +..+|+--.- .|. .++++ .+|.
T Consensus 324 ~~~~~l~~das~-----~g~~g~vl~q~~~~~~~~~~~~~~~~y~~~e~e~la~vv~~l~~~~~~l~g~~p~~~vp~~~~ 398 (557)
T 2zd1_A 324 SKDLIAEIQKQG-----QGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKE 398 (557)
T ss_dssp TSCCEEEEEEEE-----TTEEEEEEEEETTEEEEEEEEECCSCSEECHHHHHHHHHHHHHHHHHHHHSSCCEEEESBCHH
T ss_pred CCCEEEEEecCC-----CCcEEEEEecCCCceeeeeecccccccCCChHHHHHHHHHHhhhhheEEeCCCCCEECCCcHH
Confidence 345678899763 344677776655543222111112233456678888 7777755321 232 24444 6787
Q ss_pred HHHHHHH
Q 042834 80 KEVVDLA 86 (98)
Q Consensus 80 ~~vv~~l 86 (98)
+.+....
T Consensus 399 ~~~~~~~ 405 (557)
T 2zd1_A 399 TWETWWT 405 (557)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 7654443
No 58
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1}
Probab=37.70 E-value=14 Score=25.36 Aligned_cols=21 Identities=14% Similarity=0.233 Sum_probs=17.9
Q ss_pred HHHHHHCCCccEEEEechHHH
Q 042834 62 IQVAQNAKFLPIIVESDSKEV 82 (98)
Q Consensus 62 L~~a~~~g~~~v~~esDs~~v 82 (98)
++.+......++.+||||..+
T Consensus 231 ~~~v~~iPldrlLlETDaP~l 251 (325)
T 3ipw_A 231 LNVMKQIPIERLHIETDCPYC 251 (325)
T ss_dssp HHHHTTSCGGGEEECCCTTSC
T ss_pred HHHHHhCCcccEEEeCCCccc
Confidence 467778899999999999865
No 59
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=37.55 E-value=1e+02 Score=21.37 Aligned_cols=63 Identities=6% Similarity=0.032 Sum_probs=37.1
Q ss_pred CcceEEEEEeCCCc------------cEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEechHHHHH
Q 042834 21 QTAGLGVIIRDSRG------------KAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKEVVD 84 (98)
Q Consensus 21 ~~~g~G~vird~~G------------~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~ 84 (98)
+..-+|-|+|++.- +|.......+.. .+...+|+..+..+.+....+|+.++.++--...+++
T Consensus 119 r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~-~d~~~aDaEvi~l~~~~l~~lgl~~~~i~l~~~~i~~ 193 (373)
T 3rac_A 119 RWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGE-EASVDVDMDVLRLLHEASAAAGVRHHRIVVSHARLVP 193 (373)
T ss_dssp EEEEEEEEEECC------------CEEEEEEEEEECSS-CCCHHHHHHHHHHHHHHHHHHTCCSCEEEEEETTHHH
T ss_pred EEEEEcceEccCCCcccccccCCccceeEEeeeEEECC-CCCHHHHHHHHHHHHHHHHHcCCCceEEEecCHHHHH
Confidence 34567888887643 354444444432 2245666666667777788889977777654443333
No 60
>4fd4_A Arylalkylamine N-acetyltransferase like 5B; GNAT; 1.95A {Aedes aegypti}
Probab=36.98 E-value=51 Score=19.54 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=27.3
Q ss_pred HHHHHHHHHHCCCccEEEEechHHHHHHHhcCCC
Q 042834 58 VNLGIQVAQNAKFLPIIVESDSKEVVDLARNRNC 91 (98)
Q Consensus 58 l~~aL~~a~~~g~~~v~~esDs~~vv~~l~~~~~ 91 (98)
+..+++++.+.|+..+.+++++...+....+.++
T Consensus 148 l~~~~~~a~~~g~~~i~~~~~n~~a~~~Y~k~GF 181 (217)
T 4fd4_A 148 LQFQMDLSKKLGFKAISGDFTSVFSVKLAEKLGM 181 (217)
T ss_dssp HHHHHHHHHHHTCSEEEEEECSHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHCCC
Confidence 4567788999999999999888877777776554
No 61
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=36.93 E-value=23 Score=23.63 Aligned_cols=50 Identities=18% Similarity=0.096 Sum_probs=36.0
Q ss_pred eEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEe
Q 042834 24 GLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVES 77 (98)
Q Consensus 24 g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~es 77 (98)
.+| +|-|-+|+|- ...-++. ..-+.+=+.++...++++.++|+..|.++.
T Consensus 20 HVA-iIMDGNrRwA--k~rgl~r-~~GH~~G~~~l~~i~~~c~~lGI~~lTlYa 69 (253)
T 3sgv_B 20 HVA-IIMDGNGRWA--KKQGKIR-AFGHKAGAKSVRRAVSFAANNGIEALTLYA 69 (253)
T ss_dssp EEE-EEECCHHHHH--HHTTCCH-HHHHHHHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred EEE-EEecCcHHHH--HHCCCCH-HHHHHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 444 4678888773 3222333 245777788999999999999999999883
No 62
>2d4p_A Hypothetical protein TTHA1254; structural genomics, NPPSFA, national project on protein STR and functional analyses; 1.70A {Thermus thermophilus} SCOP: d.108.1.1 PDB: 2d4o_A
Probab=36.82 E-value=57 Score=19.61 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=27.0
Q ss_pred HHHHHHHHHHCCCccEEEEech--HHHHHHHhcCCCCCcc
Q 042834 58 VNLGIQVAQNAKFLPIIVESDS--KEVVDLARNRNCLSSL 95 (98)
Q Consensus 58 l~~aL~~a~~~g~~~v~~esDs--~~vv~~l~~~~~~~s~ 95 (98)
+..++++|.+.|+.+|.+.+|. ...-....+.+..+++
T Consensus 80 l~~a~~~a~~~G~~rv~L~~~~~N~~a~~fye~~Gf~~~~ 119 (141)
T 2d4p_A 80 LRAVVKSAYDAGVYEVALHLDPERKELEEALKAEGFALGP 119 (141)
T ss_dssp HHHHHHHHHHTTCSEEEECCCTTCHHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHHHCCCCEEEEEecccCHHHHHHHHHCCCEecC
Confidence 4568899999999999996654 4455555555555544
No 63
>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} SCOP: c.1.9.0
Probab=36.23 E-value=22 Score=23.38 Aligned_cols=20 Identities=10% Similarity=0.079 Sum_probs=16.7
Q ss_pred HHHHHHCCCccEEEEechHH
Q 042834 62 IQVAQNAKFLPIIVESDSKE 81 (98)
Q Consensus 62 L~~a~~~g~~~v~~esDs~~ 81 (98)
.+.+......++.+|||+..
T Consensus 180 ~~~v~~ip~drlLlETD~P~ 199 (254)
T 3gg7_A 180 AALIRSMPRDRVLTETDGPF 199 (254)
T ss_dssp HHHHHHSCGGGEEECCCTTT
T ss_pred HHHHHHcCCCeEEEeCCCCc
Confidence 46667889999999999964
No 64
>4e0a_A BH1408 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG, transferase; 1.80A {Bacillus halodurans} PDB: 4f6a_A*
Probab=36.01 E-value=57 Score=18.06 Aligned_cols=35 Identities=6% Similarity=-0.043 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHCCCccEEEEe--chHHHHHHHhcCCC
Q 042834 57 AVNLGIQVAQNAKFLPIIVES--DSKEVVDLARNRNC 91 (98)
Q Consensus 57 Al~~aL~~a~~~g~~~v~~es--Ds~~vv~~l~~~~~ 91 (98)
.+..+++++.+.|+..+.+++ ++...+....+.++
T Consensus 109 ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF 145 (164)
T 4e0a_A 109 IFEAIISYGKAHQVDAIELDVYDFNDRAKAFYHSLGM 145 (164)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEETTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCEEEEEEEcCCHHHHHHHHHcCC
Confidence 455778899999999998887 55556666666544
No 65
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}
Probab=34.45 E-value=86 Score=19.98 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=30.2
Q ss_pred EEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCC
Q 042834 26 GVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAK 69 (98)
Q Consensus 26 G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g 69 (98)
..++-|.+|.++......... .....|++.++.+|+.....+
T Consensus 170 ~~flID~~G~I~~~~~~~~~~--~~~~~eil~~l~~lq~~~~~~ 211 (240)
T 3qpm_A 170 GLFIIDEKGVLRQITMNDLPV--GRSVDETLRLVQAFQYTDKHG 211 (240)
T ss_dssp EEEEECTTSBEEEEEEECTTB--CCCHHHHHHHHHHHHHHHHHS
T ss_pred eEEEEcCCCeEEEEEecCCCC--CCCHHHHHHHHHHhhhhhhcC
Confidence 578999999998876543222 234678999999999876543
No 66
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C
Probab=34.32 E-value=79 Score=20.47 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=30.5
Q ss_pred EEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCC
Q 042834 26 GVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAK 69 (98)
Q Consensus 26 G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g 69 (98)
+.++-|.+|.++........ ......|++.++.+|+.....+
T Consensus 184 ~tflID~~G~I~~~~~~~~~--~~~~~~eil~~L~alq~~~~~~ 225 (254)
T 3tjj_A 184 GLFIIDDKGILRQITLNDLP--VGRSVDETLRLVQAFQYTDKHG 225 (254)
T ss_dssp EEEEECTTSBEEEEEEECTT--CCCCHHHHHHHHHHHHHHHHHC
T ss_pred eEEEECCCCeEEEEEecCCC--CCCCHHHHHHHHHhhccccccC
Confidence 57899999999887654322 2335678999999999876543
No 67
>3msh_A Hepatitis B virus X-interacting protein; alpha-beta proteins, profilin-like fold, roadblock/LC7 domai superfamily, protein binding; HET: PG4; 1.51A {Homo sapiens} PDB: 3ms6_A*
Probab=34.31 E-value=66 Score=18.29 Aligned_cols=54 Identities=20% Similarity=0.183 Sum_probs=33.8
Q ss_pred CcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCC-----CccEEEEechHH
Q 042834 21 QTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAK-----FLPIIVESDSKE 81 (98)
Q Consensus 21 ~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g-----~~~v~~esDs~~ 81 (98)
+.+-+|+++-|+.|.-+.+.-. . +...|-.++.+ .+.|..+. .-.|.+|+|+..
T Consensus 15 ~pgvvGvlc~D~qGLcLg~~G~----~-s~~~AG~i~~l--a~~AakL~p~~~~~P~I~LEsDs~~ 73 (99)
T 3msh_A 15 NPSIVGVLCTDSQGLNLGCRGT----L-SDEHAGVISVL--AQQAAKLTSDPTDIPVVCLESDNGN 73 (99)
T ss_dssp STTEEEEEEECTTCCEEEEEET----C-CGGGHHHHHHH--HHHHHHTCCCSSCCCCEEEEETTEE
T ss_pred cCCcEEEEEECCCCCcccccCC----C-CcccchHHHHH--HHHHHhcCCCCCCCCEEEEEeCCce
Confidence 3556799999999998876532 2 33344433322 24454443 348999999864
No 68
>3g8w_A Lactococcal prophage PS3 protein 05; APC61042, acetyltransferase, staphylococcus epidermidis ATCC structural genomics; HET: NHE FLC; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=33.84 E-value=65 Score=18.11 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHCCCccEEE--EechHHHHHHHhcCCCC
Q 042834 57 AVNLGIQVAQNAKFLPIIV--ESDSKEVVDLARNRNCL 92 (98)
Q Consensus 57 Al~~aL~~a~~~g~~~v~~--esDs~~vv~~l~~~~~~ 92 (98)
.+...++++.+.|+.+|.+ ..++...+....+.++.
T Consensus 102 ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~y~k~GF~ 139 (169)
T 3g8w_A 102 LINHIIQYAKEQNIETLMIAIASNNISAKVFFSSIGFE 139 (169)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHTTTCE
T ss_pred HHHHHHHHHHHCCCCEEEEEEecCCHHHHHHHHHcCCE
Confidence 3556778899999999985 45566667777666543
No 69
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=33.69 E-value=1.2e+02 Score=21.17 Aligned_cols=63 Identities=14% Similarity=0.074 Sum_probs=40.4
Q ss_pred CcceEEEEEeCCC------ccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEechHHHHHH
Q 042834 21 QTAGLGVIIRDSR------GKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKEVVDL 85 (98)
Q Consensus 21 ~~~g~G~vird~~------G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~ 85 (98)
+..-+|-|+|++. -+|.......+.. +...+|+..+..+.+....+|+.++.++--...+++.
T Consensus 105 r~~y~g~vfR~e~~~~gR~Ref~Q~g~ei~G~--~~~~aDaEvi~l~~~~l~~lgl~~~~i~l~~~~i~~~ 173 (400)
T 3od1_A 105 RLAYQSNVYRAQQNEGGKPAEFEQLGVELIGD--GTASADGEVIALMIAALKRAGLSEFKVAIGHVGYVNA 173 (400)
T ss_dssp EEEEEEEEECCCC---CCCSEEEEEEEEEESC--CSHHHHHHHHHHHHHHHHHTTCCSEEEEEEEHHHHHH
T ss_pred EEEEEcCEEeCCCCCCCCCCccEEeEEEEECC--CChHhHHHHHHHHHHHHHHCCCCceEEEecCHHHHHH
Confidence 3456678888764 2355555554543 3345666666677888889999888888755554443
No 70
>1t23_A Chromosomal protein MC1; alpha/beta barrel, DNA binding protein; NMR {Methanosarcina thermophila} SCOP: d.247.1.1 PDB: 2khl_A
Probab=33.17 E-value=66 Score=17.99 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=16.0
Q ss_pred EEEeCCCccEEEeeeeeecc
Q 042834 27 VIIRDSRGKAVAATVQKVSF 46 (98)
Q Consensus 27 ~vird~~G~~i~~~~~~~~~ 46 (98)
+++||.+|.-+..++...+.
T Consensus 6 F~Lr~~~G~E~gvFtG~~Pr 25 (93)
T 1t23_A 6 FVLRDEDGNEHGVFTGKQPR 25 (93)
T ss_dssp EEECTTTTSCCEEEEESSTT
T ss_pred EEEEcCCCcccceEcCCChH
Confidence 68999999988888875443
No 71
>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A*
Probab=33.09 E-value=32 Score=23.35 Aligned_cols=38 Identities=21% Similarity=0.264 Sum_probs=28.2
Q ss_pred EEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHC
Q 042834 28 IIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNA 68 (98)
Q Consensus 28 vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~ 68 (98)
++|+.+|.-+ +.+....+...-.++.+|..+|+.+.+.
T Consensus 177 tvRe~DGLA~---SSRN~yLs~~eR~~A~~L~~aL~~~~~~ 214 (285)
T 3mxt_A 177 IIREEDGLAK---SSRNVYLSKEERKASLAISQSIFLAEKL 214 (285)
T ss_dssp CCBCTTSCBC---CGGGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceECCCCCch---hhccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 5899999644 4455556566778899999999998753
No 72
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Probab=32.83 E-value=92 Score=19.54 Aligned_cols=43 Identities=12% Similarity=0.026 Sum_probs=31.6
Q ss_pred EEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCC
Q 042834 26 GVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKF 70 (98)
Q Consensus 26 G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~ 70 (98)
+.+|-|.+|.++......... .....|++..+.+|+.....+.
T Consensus 130 ~~flID~~G~I~~~~~~~~~~--g~~~~ell~~i~~lq~~~~~~~ 172 (220)
T 1xcc_A 130 CLFFISPEKKIKATVLYPATT--GRNAHEILRVLKSLQLTYTTPV 172 (220)
T ss_dssp EEEEECTTSBEEEEEEECTTB--CCCHHHHHHHHHHHHHHHHSSE
T ss_pred eEEEECCCCEEEEEEecCCCC--CCCHHHHHHHHHHHHhhhcCCc
Confidence 678899999998876543221 2356789999999998877654
No 73
>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens}
Probab=31.60 E-value=26 Score=23.19 Aligned_cols=20 Identities=15% Similarity=0.267 Sum_probs=16.5
Q ss_pred HHHHHHCCCccEEEEechHH
Q 042834 62 IQVAQNAKFLPIIVESDSKE 81 (98)
Q Consensus 62 L~~a~~~g~~~v~~esDs~~ 81 (98)
++++......++.+|||+..
T Consensus 203 ~~~~~~~p~drlLleTD~P~ 222 (301)
T 2xio_A 203 LEVLKSIPSEKLMIETDAPW 222 (301)
T ss_dssp HHHHHTSCGGGEEECCCTTS
T ss_pred HHHHHhCChHHEEEecCCCc
Confidence 35666788999999999974
No 74
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*
Probab=31.60 E-value=29 Score=23.07 Aligned_cols=51 Identities=20% Similarity=0.079 Sum_probs=34.0
Q ss_pred eEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEec
Q 042834 24 GLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESD 78 (98)
Q Consensus 24 g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esD 78 (98)
.++ ||-|.+|+| +...-++. ..-+.+-+.++.+-++|+.++|+..|.++.=
T Consensus 20 HVA-iImDGN~Rw--Ak~~gl~r-~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaF 70 (253)
T 3qas_B 20 HVA-IIMDGNGRW--AKKQGKIR-AFGHKAGAKSVRRAVSFAANNGIEALTLYAF 70 (253)
T ss_dssp EEE-EECCCHHHH--HHHTTCCH-HHHHHHHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred EEE-EEecCCHHH--HHHcCCCh-hhhHHHHHHHHHHHHHHHHHCCCCEEEEEEe
Confidence 444 466777766 22221221 1234556788999999999999999999874
No 75
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A
Probab=31.09 E-value=29 Score=22.96 Aligned_cols=48 Identities=15% Similarity=-0.002 Sum_probs=32.6
Q ss_pred EEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEec
Q 042834 28 IIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESD 78 (98)
Q Consensus 28 vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esD 78 (98)
||-|.+|+| +...-++. ..-+.+-+-++.+-++|+.++|+..|.++.=
T Consensus 21 iImDGN~Rw--Ak~~gl~~-~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaF 68 (245)
T 2d2r_A 21 IIMDGNGRW--AKLKNKAR-AYGHKKGVKTLKDITIWCANHKLECLTLYAF 68 (245)
T ss_dssp EECCCHHHH--HHTTTCCH-HHHHHHHHHHHHHHHHHHHTTTCSEEEEECC
T ss_pred EEecCchHH--HHHCCCCh-hhhHHHHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 466777766 22221221 1234556788999999999999999999873
No 76
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=31.08 E-value=1.1e+02 Score=20.01 Aligned_cols=64 Identities=16% Similarity=0.028 Sum_probs=39.6
Q ss_pred cceEEEEEeCCCc---cEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEechHHHHHHHh
Q 042834 22 TAGLGVIIRDSRG---KAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKEVVDLAR 87 (98)
Q Consensus 22 ~~g~G~vird~~G---~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~ 87 (98)
..-+|-|+|.+.. +|.......+.. +...+|+..+..+.+....+|+.++.++--...+.+.+-
T Consensus 73 ~~y~g~vfR~e~~~~Ref~Q~g~ei~g~--~~~~~DaEvi~l~~~~l~~lgl~~~~i~l~~~~~~~~~~ 139 (275)
T 1usy_A 73 VWYADFVYRYSGSDLVAEYQLGLEKVPR--NSLDDSLEVLEIIVESASEFFEGPVIVEIGHTGVYEDLL 139 (275)
T ss_dssp EECCEEEEEEETTEEEEEEEEEEEEESC--CSHHHHHHHHHHHHHHHHHHCCSCEEEEEEETTHHHHHH
T ss_pred EEEeceEEecCCCCCCeeeEeCEEEecC--CCchhHHHHHHHHHHHHHHcCCCCeEEEeCCHHHHHHHH
Confidence 4455777776553 344444444443 233566666777788888899988888765555555444
No 77
>2r5o_A Putative ATP binding component of ABC- transporter; immunoglobulin fold, carbohydrate binding, domain swapping, O antigen export; HET: PG4; 1.30A {Escherichia coli}
Probab=29.81 E-value=62 Score=19.91 Aligned_cols=35 Identities=11% Similarity=0.101 Sum_probs=24.0
Q ss_pred EEEEecceeecCCCcceEEEEEeCCCccEEEeeee
Q 042834 8 FKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQ 42 (98)
Q Consensus 8 ~k~n~D~s~~~~~~~~g~G~vird~~G~~i~~~~~ 42 (98)
+++.+..-+...-...-+|+.|+|..|..+.+...
T Consensus 72 v~l~i~~~~~~~i~~~v~G~~Ik~~~G~~I~g~nT 106 (188)
T 2r5o_A 72 TDFLMKVVFEYDFDCVVPGILIKTLDGLFLYGTNS 106 (188)
T ss_dssp EEEEEEEEESSCEEEEEEEEEEEETTCCEEEEEEH
T ss_pred EEEEEEEEECCcCCccEEEEEEECCCCCEEEecCc
Confidence 34444444444445677899999999999986553
No 78
>2jlm_A Putative phosphinothricin N-acetyltransferase; methionine sulfoximine; 2.35A {Acinetobacter baylyi}
Probab=29.52 E-value=88 Score=18.28 Aligned_cols=34 Identities=12% Similarity=0.049 Sum_probs=24.6
Q ss_pred HHHHHHHHHHCCCccEEEEe--chHHHHHHHhcCCC
Q 042834 58 VNLGIQVAQNAKFLPIIVES--DSKEVVDLARNRNC 91 (98)
Q Consensus 58 l~~aL~~a~~~g~~~v~~es--Ds~~vv~~l~~~~~ 91 (98)
+...++++.++|+++|.++. ++...+....+.++
T Consensus 112 l~~~~~~a~~~g~~~i~l~v~~~N~~a~~~yek~GF 147 (182)
T 2jlm_A 112 MNELIKRAVESEVHVMVGCIDATNVASIQLHQKLGF 147 (182)
T ss_dssp HHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCceEEEEEEeCCCHHHHHHHHHCCC
Confidence 45667888889999999877 55566666666554
No 79
>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A*
Probab=29.43 E-value=32 Score=23.41 Aligned_cols=38 Identities=11% Similarity=0.092 Sum_probs=28.0
Q ss_pred EEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHC
Q 042834 28 IIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNA 68 (98)
Q Consensus 28 vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~ 68 (98)
++|+.+|.-+ +.+....+...-.++.+|..+|+.+.+.
T Consensus 180 tvRe~DGLA~---SSRN~yLs~~eR~~A~~L~~aL~~a~~~ 217 (287)
T 3q12_A 180 TVRAKDGLAL---SSRNGYLTEEERQIAPQLSKIMWALAEK 217 (287)
T ss_dssp CCBCTTSCBC---CGGGGGSCHHHHHHTHHHHHHHHHHHHH
T ss_pred ceECCCCCch---hhccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 5799999644 4455556566777899999999998753
No 80
>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.50A {Saccharomyces cerevisiae}
Probab=28.71 E-value=30 Score=24.54 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=17.8
Q ss_pred HHHHHHHCCCccEEEEechHH
Q 042834 61 GIQVAQNAKFLPIIVESDSKE 81 (98)
Q Consensus 61 aL~~a~~~g~~~v~~esDs~~ 81 (98)
.++.+......++.+|||+..
T Consensus 286 ~~e~v~~iPldrLLlETDaP~ 306 (401)
T 3e2v_A 286 NLAVVKQIPTERLLLETDAPW 306 (401)
T ss_dssp HHHHHHTSCGGGEEECCCTTS
T ss_pred HHHHHHhCCchhEEEecCCCC
Confidence 357778899999999999983
No 81
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1
Probab=28.42 E-value=29 Score=22.98 Aligned_cols=52 Identities=13% Similarity=0.060 Sum_probs=34.3
Q ss_pred ceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEec
Q 042834 23 AGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESD 78 (98)
Q Consensus 23 ~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esD 78 (98)
-.+|+ |-|.+|+|- ...-++. ..-+.+-+.++.+-++|+.++|+..|.++.=
T Consensus 22 ~HVAi-ImDGN~RwA--~~~gl~~-~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaF 73 (249)
T 1f75_A 22 KHIAI-IMDGNGRWA--KQKKMPR-IKGHYEGMQTVRKITRYASDLGVKYLTLYAF 73 (249)
T ss_dssp SEEEE-EECCHHHHH--HHTTCCH-HHHHHHHHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred CEEEE-EecCCcHHH--HHCCCCh-hhhHHHHHHHHHHHHHHHHHcCCCEEEEEEe
Confidence 34444 667777662 2111221 1235556788999999999999999999873
No 82
>3bbj_A Putative thioesterase II; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; 2.16A {Thermobifida fusca}
Probab=28.07 E-value=1.3e+02 Score=19.59 Aligned_cols=41 Identities=24% Similarity=0.230 Sum_probs=29.3
Q ss_pred CCCCCceEEEEecceeecCCCcceEEEEEeCCCccEEEeeee
Q 042834 1 TSPPNGWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQ 42 (98)
Q Consensus 1 ~~P~~g~~k~n~D~s~~~~~~~~g~G~vird~~G~~i~~~~~ 42 (98)
++|..+|+-+..+.-+..+ +.+=.-..+.|.+|..+.....
T Consensus 226 r~~~~~Wll~~~~s~~a~~-Grg~~~~~i~d~~G~LvA~~~Q 266 (272)
T 3bbj_A 226 AIPEPGPLAFRSTCALVSD-GWFDENVDLWDARGRLVAQSRQ 266 (272)
T ss_dssp SCCCSSCEEEEEECSEEET-TEEEEEEEEECTTSCEEEEEEE
T ss_pred ccCCCCeEEEEEEEEEecC-CcEeeeEEEECCCCCEEEEEee
Confidence 3677889999888887765 4444445678999998776543
No 83
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A
Probab=27.86 E-value=28 Score=23.62 Aligned_cols=28 Identities=14% Similarity=-0.254 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCccEEEEec
Q 042834 51 AYMEAAAVNLGIQVAQNAKFLPIIVESD 78 (98)
Q Consensus 51 ~~aE~~Al~~aL~~a~~~g~~~v~~esD 78 (98)
+.+-+.++.+-++|+.++|+..|.++.=
T Consensus 81 H~~G~~~l~~iv~~c~~lGI~~LTlYaF 108 (284)
T 2vg3_A 81 HKMGEAVVIDIACGAIELGIKWLSLYAF 108 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 4566788999999999999999999873
No 84
>4gym_A Glyoxalase/bleomycin resistance protein/dioxygena; PSI-biology, midwest center for structural genomics, MCSG, oxidoreductase; HET: MSE; 1.56A {Conexibacter woesei}
Probab=26.89 E-value=48 Score=18.86 Aligned_cols=19 Identities=16% Similarity=0.050 Sum_probs=15.3
Q ss_pred cceEEEEEeCCCccEEEee
Q 042834 22 TAGLGVIIRDSRGKAVAAT 40 (98)
Q Consensus 22 ~~g~G~vird~~G~~i~~~ 40 (98)
..|..+.++|.+|+.+--.
T Consensus 113 ~~~~~~~f~DPDGn~iEi~ 131 (149)
T 4gym_A 113 GFMYGRSFHDLDGHLWEVM 131 (149)
T ss_dssp SSEEEEEEECTTCCEEEEE
T ss_pred CCEEEEEEEcCCCCEEEEE
Confidence 3567889999999988754
No 85
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}
Probab=26.76 E-value=23 Score=23.64 Aligned_cols=19 Identities=21% Similarity=0.165 Sum_probs=15.0
Q ss_pred HHHHHCCCccEEEEechHH
Q 042834 63 QVAQNAKFLPIIVESDSKE 81 (98)
Q Consensus 63 ~~a~~~g~~~v~~esDs~~ 81 (98)
+.+...+..++.+|||+..
T Consensus 194 ~~v~~ip~drlLlETD~P~ 212 (287)
T 3rcm_A 194 PLVGNIPEGRLMLESDAPY 212 (287)
T ss_dssp HHHTTSCTTSEEECCCTTS
T ss_pred HHHHhcCCccEEEeccCCc
Confidence 4455678999999999864
No 86
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Probab=26.70 E-value=1.3e+02 Score=19.45 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=29.4
Q ss_pred EEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHC
Q 042834 26 GVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNA 68 (98)
Q Consensus 26 G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~ 68 (98)
+.+|-|.+|.++......... .....|++..+.+|+.....
T Consensus 126 ~~fIID~dG~I~~~~~~~~~~--gr~~~Ellr~I~alq~~~~~ 166 (249)
T 3a2v_A 126 GVFIVDARGVIRTMLYYPMEL--GRLVDEILRIVKALKLGDSL 166 (249)
T ss_dssp EEEEECTTSBEEEEEEECTTB--CCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEECCCCeEEEEEecCCcc--cchhHHHHHHHHHHHhcccc
Confidence 578999999998876543221 12467999999999887544
No 87
>1tiq_A Protease synthase and sporulation negative regulatory protein PAI 1; alpha-beta protein, structural genomics, PSI; HET: COA; 1.90A {Bacillus subtilis} SCOP: d.108.1.1
Probab=26.42 E-value=1e+02 Score=17.93 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=24.4
Q ss_pred HHHHHHHHHHCCCccEEEEe--chHHHHHHHhcCCC
Q 042834 58 VNLGIQVAQNAKFLPIIVES--DSKEVVDLARNRNC 91 (98)
Q Consensus 58 l~~aL~~a~~~g~~~v~~es--Ds~~vv~~l~~~~~ 91 (98)
+..+++++.+.|+.+|.+++ ++...+....+.++
T Consensus 112 l~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF 147 (180)
T 1tiq_A 112 LNKAIEIALERNKKNIWLGVWEKNENAIAFYKKMGF 147 (180)
T ss_dssp HHHHHHHHHHTTCSEEEEEEETTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCEEEEEehhcCHHHHHHHHHcCC
Confidence 34567888999999998887 45666666666554
No 88
>3i3g_A N-acetyltransferase; malaria, structural genomics, structural genomics consortium, SGC,; 1.86A {Trypanosoma brucei} PDB: 3fb3_A
Probab=26.36 E-value=90 Score=17.34 Aligned_cols=33 Identities=9% Similarity=0.145 Sum_probs=23.9
Q ss_pred HHHHHHHHHHCCCccEEEEechHHHHHHHhcCCC
Q 042834 58 VNLGIQVAQNAKFLPIIVESDSKEVVDLARNRNC 91 (98)
Q Consensus 58 l~~aL~~a~~~g~~~v~~esDs~~vv~~l~~~~~ 91 (98)
+...++++.+.|+..+.++++... +....+.++
T Consensus 118 l~~~~~~a~~~g~~~i~l~~~~~n-~~~y~k~GF 150 (161)
T 3i3g_A 118 IMDLCEISRSKGCYKVILDSSEKS-LPFYEKLGF 150 (161)
T ss_dssp HHHHHHHHHHTTCSEEEEEECTTT-HHHHHHTTC
T ss_pred HHHHHHHHHHcCCcEEEEEecccc-hhHHHhcCC
Confidence 556778899999999999987655 455544443
No 89
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=26.28 E-value=1.3e+02 Score=18.96 Aligned_cols=42 Identities=12% Similarity=0.120 Sum_probs=30.2
Q ss_pred EEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCC
Q 042834 26 GVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAK 69 (98)
Q Consensus 26 G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g 69 (98)
+.+|-|.+|.++......... .....|++..+.+|+.....+
T Consensus 133 ~~fiID~~G~I~~~~~~~~~~--gr~~~eil~~i~~l~~~~~~~ 174 (224)
T 1prx_A 133 VVFVFGPDKKLKLSILYPATT--GRNFDEILRVVISLQLTAEKR 174 (224)
T ss_dssp EEEEECTTSBEEEEEECCTTB--CCCHHHHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCEEEEEEecCCCC--CCCHHHHHHHHHHHHhhccCC
Confidence 678999999998876543221 124679999999999876543
No 90
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=26.26 E-value=97 Score=18.00 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=20.1
Q ss_pred EEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHH
Q 042834 27 VIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGI 62 (98)
Q Consensus 27 ~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL 62 (98)
.++-|.+|.++........ ...+..-|+++++.+|
T Consensus 122 tflID~~G~I~~~~~~~~~-~~~~~~~eil~~l~~L 156 (157)
T 4g2e_A 122 VFVIDKEGKVRYKWVSDDP-TKEPPYDEIEKVVKSL 156 (157)
T ss_dssp EEEECTTSBEEEEEEESST-TCCCCHHHHHHHHHHT
T ss_pred EEEECCCCEEEEEEECCCC-CCCCCHHHHHHHHHHh
Confidence 5788999999876543211 1123344666655554
No 91
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=26.14 E-value=86 Score=21.37 Aligned_cols=58 Identities=7% Similarity=-0.036 Sum_probs=36.0
Q ss_pred CcceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHH-HCCCccEEEEec
Q 042834 21 QTAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQ-NAKFLPIIVESD 78 (98)
Q Consensus 21 ~~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~-~~g~~~v~~esD 78 (98)
....+|..++..+|++..+..--.....-.+-||-.|+..++.--. ...+..+.+-.|
T Consensus 211 S~~~vGAAl~t~dG~iytG~nvEnAay~~slcAEr~Al~~av~~G~~~~~i~aiv~v~~ 269 (298)
T 4eg2_A 211 TQNFSGVALKMRSGAIYLGAYAENAAFNPSLPPLQVALAQAMMMGESFEDIEAAALVES 269 (298)
T ss_dssp TCCCEEEEEEETTSCEEEEECBCCTTSTTCBCHHHHHHHHHHHTTCCGGGEEEEEEEEC
T ss_pred cCCCeEEEEEeCCCCEEEEEeeeccccCCCCCHHHHHHHHHHHCCCCccCeEEEEEEeC
Confidence 3467899999999998776543322223346788888887765211 013566666554
No 92
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=25.80 E-value=1e+02 Score=17.86 Aligned_cols=59 Identities=12% Similarity=0.057 Sum_probs=35.2
Q ss_pred EEeCCCccEEEeeee-e----ecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEe-----chHHHHHHHh
Q 042834 28 IIRDSRGKAVAATVQ-K----VSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVES-----DSKEVVDLAR 87 (98)
Q Consensus 28 vird~~G~~i~~~~~-~----~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~es-----Ds~~vv~~l~ 87 (98)
-+.|..|..+...+. . -..-+++..|.. |...+.+.+.++|+..|.+.. --+.++.+|.
T Consensus 21 tiTD~~G~~i~~~S~G~~gfKg~rk~tp~AA~~-aa~~~~~~~~~~Gi~~v~v~vkG~G~Gr~~airaL~ 89 (117)
T 3r8n_K 21 TITDRQGNALGWATAGGSGFRGSRKSTPFAAQV-AAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALN 89 (117)
T ss_dssp EEECTTSCCSEEEETGGGSCCGGGGSSHHHHHH-HHHHHHHHHTTSCCCEEEEEEECSSSSTTHHHHHHH
T ss_pred EEEcCCCCEEEEEcCCccccCCCccCCHHHHHH-HHHHHHHHHHHhCCcEEEEEEeCCCccHHHHHHHHH
Confidence 466777775543221 0 122456666655 445677888999999988875 2334555554
No 93
>3te4_A GH12636P, dopamine N acetyltransferase, isoform A; dopamine/acetyl COA, N-acetyltransferase domain; HET: ACO; 1.46A {Drosophila melanogaster} PDB: 3v8i_A*
Probab=25.47 E-value=1e+02 Score=18.57 Aligned_cols=34 Identities=6% Similarity=-0.071 Sum_probs=25.8
Q ss_pred HHHHHHHHHHCCCccEEEEechHHHHHHHhcCCC
Q 042834 58 VNLGIQVAQNAKFLPIIVESDSKEVVDLARNRNC 91 (98)
Q Consensus 58 l~~aL~~a~~~g~~~v~~esDs~~vv~~l~~~~~ 91 (98)
+...++++.+.|+..+.+.+++........+.++
T Consensus 147 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~y~~~Gf 180 (215)
T 3te4_A 147 TERAYEYMRENGINVYHVLCSSHYSARVMEKLGF 180 (215)
T ss_dssp HHHHHHHHHHHTCCEEEEEESSHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCEEEEEecCHHHHHHHHHCCC
Confidence 3455678889999999999988777777666554
No 94
>2gan_A 182AA long hypothetical protein; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.10A {Pyrococcus horikoshii} SCOP: d.108.1.1
Probab=25.40 E-value=96 Score=18.08 Aligned_cols=34 Identities=9% Similarity=0.103 Sum_probs=24.9
Q ss_pred HHHHHHHHHHCCCccEEEEechHHHHHH-HhcCCC
Q 042834 58 VNLGIQVAQNAKFLPIIVESDSKEVVDL-ARNRNC 91 (98)
Q Consensus 58 l~~aL~~a~~~g~~~v~~esDs~~vv~~-l~~~~~ 91 (98)
+...++++.+.|+..|.+..++...+.. +.+.++
T Consensus 128 l~~~~~~~~~~g~~~i~l~~~n~~a~~~~y~k~GF 162 (190)
T 2gan_A 128 LEFAVKRLRSLGKDPYVVTFPNLEAYSYYYMKKGF 162 (190)
T ss_dssp HHHHHHHHHHTTCEEEEEECGGGSHHHHHHHTTTE
T ss_pred HHHHHHHHHHCCCCEEEEecCCccccccEEecCCC
Confidence 4456788888999999998666666666 665543
No 95
>1z4e_A Transcriptional regulator; nysgxrc target T2017, GNAT fold, structural genomics, PSI, P structure initiative; 2.00A {Bacillus halodurans} SCOP: d.108.1.1
Probab=25.21 E-value=60 Score=18.10 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=22.3
Q ss_pred HHHHHHHHHHCCCccEEEEech--HHHHHHHhcCC
Q 042834 58 VNLGIQVAQNAKFLPIIVESDS--KEVVDLARNRN 90 (98)
Q Consensus 58 l~~aL~~a~~~g~~~v~~esDs--~~vv~~l~~~~ 90 (98)
+..++++|.+.|+..+.++++. ...+....+.+
T Consensus 107 l~~~~~~a~~~g~~~i~l~v~~~N~~a~~~Y~k~G 141 (153)
T 1z4e_A 107 VCWAIERAKERGCHLIQLTTDKQRPDALRFYEQLG 141 (153)
T ss_dssp HHHHHHHHHHTTEEEEEEEEETTCTTHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCEEEEEEccCChHHHHHHHHcC
Confidence 4466788899999999988764 33444444433
No 96
>3eo4_A Uncharacterized protein MJ1062; APC60792.2,MJ_1062,methanocaldococcus jannaschii DSM 2661, S genomics, PSI-2; HET: MES PG6; 2.19A {Methanocaldococcus jannaschii}
Probab=25.13 E-value=88 Score=17.55 Aligned_cols=35 Identities=11% Similarity=0.056 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHCCCccEEEEech--HHHHHHHhcCCC
Q 042834 57 AVNLGIQVAQNAKFLPIIVESDS--KEVVDLARNRNC 91 (98)
Q Consensus 57 Al~~aL~~a~~~g~~~v~~esDs--~~vv~~l~~~~~ 91 (98)
++...++++.+.|+.+|.++++. ...+....+.++
T Consensus 111 ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~y~k~GF 147 (164)
T 3eo4_A 111 SVSLVLKWLKNIGYKKAHARILENNIRSIKLFESLGF 147 (164)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHCCC
Confidence 45567788889999999988764 345555555443
No 97
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=25.11 E-value=1.4e+02 Score=19.04 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=30.4
Q ss_pred EEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCC
Q 042834 26 GVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAK 69 (98)
Q Consensus 26 G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g 69 (98)
+.+|.|.+|.++......... .....|++..+.+|+.....+
T Consensus 129 ~~fiID~~G~I~~~~~~~~~~--gr~~~eilr~l~~Lq~~~~~~ 170 (233)
T 2v2g_A 129 AVFIIGPDKKLKLSILYPATT--GRNFSEILRVIDSLQLTAQKK 170 (233)
T ss_dssp EEEEECTTSBEEEEEEECTTB--CCCHHHHHHHHHHHHHHHHSS
T ss_pred eEEEECCCCEEEEEEecCCCC--CCCHHHHHHHHHHHHhhccCC
Confidence 678899999998876543221 124679999999999886654
No 98
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=25.03 E-value=57 Score=15.38 Aligned_cols=17 Identities=24% Similarity=0.081 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042834 50 VAYMEAAAVNLGIQVAQ 66 (98)
Q Consensus 50 ~~~aE~~Al~~aL~~a~ 66 (98)
-.++|.-|++.||+-+.
T Consensus 16 rIv~eCnavrqALQdLl 32 (40)
T 4e17_B 16 RIVAECNAVRQALQDLL 32 (40)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35889999999998553
No 99
>2llz_A Uncharacterized protein YJDK; RNAse, biofilm, unknown function; NMR {Escherichia coli}
Probab=24.95 E-value=57 Score=18.57 Aligned_cols=41 Identities=12% Similarity=0.054 Sum_probs=30.4
Q ss_pred cceEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHH
Q 042834 22 TAGLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGI 62 (98)
Q Consensus 22 ~~g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL 62 (98)
.+|+-..+-|.+|..-.-++..+..++.-..-|..++..+|
T Consensus 35 ~aGF~ttl~D~~G~pHeLgtNsFgliS~l~~~ev~~La~~L 75 (100)
T 2llz_A 35 DMNFSSIVADEYGIPRQLNENSFAITTSLAASEIEDLIRLK 75 (100)
T ss_dssp HTTEESEEECSSSCEEECTTTEEEECCCSCHHHHHHHHHHG
T ss_pred hCCceeEeecCCCCceeccccceeeeccCCHHHHHHHHHHH
Confidence 46777789999999988888888777655555666665555
No 100
>2fiw_A GCN5-related N-acetyltransferase:aminotransferase II; alpha-beta-alpha sandwich, GCN4-related acetyltransferase, S genomics, PSI; HET: ACO; 2.35A {Rhodopseudomonas palustris} SCOP: d.108.1.1
Probab=24.73 E-value=93 Score=17.42 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=23.4
Q ss_pred HHHHHHHHHHCCCccEEEEechHHHHHHHhcCCC
Q 042834 58 VNLGIQVAQNAKFLPIIVESDSKEVVDLARNRNC 91 (98)
Q Consensus 58 l~~aL~~a~~~g~~~v~~esDs~~vv~~l~~~~~ 91 (98)
+..+++++.+.|+..+.+++ +...+....+.++
T Consensus 104 l~~~~~~~~~~g~~~i~~~~-n~~a~~~y~k~GF 136 (172)
T 2fiw_A 104 IDALEKLAGARGALILTVDA-SDNAAEFFAKRGY 136 (172)
T ss_dssp HHHHHHHHHTTTCSEEEEEE-CTTTHHHHHTTTC
T ss_pred HHHHHHHHHhcCCcEEEEEe-CHHHHHHHHHcCC
Confidence 45667888889999999988 4455555555443
No 101
>4fd5_A Arylalkylamine N-acetyltransferase 2; GNAT; 1.64A {Aedes aegypti} PDB: 4fd6_A
Probab=24.39 E-value=1.2e+02 Score=18.24 Aligned_cols=34 Identities=6% Similarity=0.056 Sum_probs=26.4
Q ss_pred HHHHHHHHHHCCCccEEEEechHHHHHHHhcCCC
Q 042834 58 VNLGIQVAQNAKFLPIIVESDSKEVVDLARNRNC 91 (98)
Q Consensus 58 l~~aL~~a~~~g~~~v~~esDs~~vv~~l~~~~~ 91 (98)
+..+++++.+.|+..+.+.+.+...+....+.++
T Consensus 152 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~y~~~Gf 185 (222)
T 4fd5_A 152 IEKSEELALDRGFQVMKTDATGAFSQRVVSSLGF 185 (222)
T ss_dssp HHHHHHHHHHTTCCEEEEEECSHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHCCC
Confidence 4567788899999999999988777777666554
No 102
>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12
Probab=24.15 E-value=35 Score=21.65 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=13.7
Q ss_pred HHHHCCCccEEEEechH
Q 042834 64 VAQNAKFLPIIVESDSK 80 (98)
Q Consensus 64 ~a~~~g~~~v~~esDs~ 80 (98)
++...+..++.+|||+.
T Consensus 193 ~~~~~~~dril~eTD~P 209 (259)
T 1zzm_A 193 VIAKLPLASLLLETDAP 209 (259)
T ss_dssp HHHHSCGGGEEECCCBT
T ss_pred HHHhCCHHHEEEecCCC
Confidence 34467889999999995
No 103
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=23.95 E-value=51 Score=19.23 Aligned_cols=15 Identities=13% Similarity=0.045 Sum_probs=11.9
Q ss_pred CCceEEEEecceeec
Q 042834 4 PNGWFKVNVDAAIKL 18 (98)
Q Consensus 4 ~~g~~k~n~D~s~~~ 18 (98)
...+|++||.|..+.
T Consensus 11 ~~~~V~LNVGG~~F~ 25 (124)
T 1s1g_A 11 QDELIVLNVSGRRFQ 25 (124)
T ss_dssp -CCEEEEEETTEEEE
T ss_pred CCCEEEEEeCCEEEE
Confidence 457999999998874
No 104
>2dxq_A AGR_C_4057P, acetyltransferase; structural genomics, PSI-2, protein struc initiative, midwest center for structural genomics, MCSG; 1.80A {Agrobacterium tumefaciens str}
Probab=23.82 E-value=1e+02 Score=17.18 Aligned_cols=34 Identities=15% Similarity=0.156 Sum_probs=24.5
Q ss_pred HHHHHHHHHHCCCccEEEEec--hHHHHHHHhcCCC
Q 042834 58 VNLGIQVAQNAKFLPIIVESD--SKEVVDLARNRNC 91 (98)
Q Consensus 58 l~~aL~~a~~~g~~~v~~esD--s~~vv~~l~~~~~ 91 (98)
+..+++++.+.|+.+|.+++. ....+....+.++
T Consensus 103 l~~~~~~a~~~g~~~i~l~v~~~N~~A~~fY~k~GF 138 (150)
T 2dxq_A 103 VRHAIETAFGANCYKVMLLTGRHDPAVHAFYESCGF 138 (150)
T ss_dssp HHHHHHHHHHTTCSEEEEEECCCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHcCC
Confidence 456778899999999998874 4556666665554
No 105
>1on0_A YYCN protein; structural genomics, alpha-beta protein with anti-parallel B strands, PSI, protein structure initiative; 2.20A {Bacillus subtilis} SCOP: d.108.1.1
Probab=23.65 E-value=1.1e+02 Score=17.35 Aligned_cols=34 Identities=9% Similarity=-0.027 Sum_probs=24.5
Q ss_pred HHHHHHHHHHCCCccEEEEec--hHHHHHHHhcCCC
Q 042834 58 VNLGIQVAQNAKFLPIIVESD--SKEVVDLARNRNC 91 (98)
Q Consensus 58 l~~aL~~a~~~g~~~v~~esD--s~~vv~~l~~~~~ 91 (98)
+...++++.+.|+.+|.+++. +...++...+.++
T Consensus 110 l~~~~~~a~~~g~~~i~l~v~~~N~~a~~~Y~k~GF 145 (158)
T 1on0_A 110 LAALDQAARSMGIRKLSLHVFAHNQTARKLYEQTGF 145 (158)
T ss_dssp HHHHHHHHHHHTCCEEEECCCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCEEEEEEecCCHHHHHHHHHCCC
Confidence 445678888899999999876 4556666665554
No 106
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri}
Probab=23.56 E-value=95 Score=20.86 Aligned_cols=29 Identities=21% Similarity=0.224 Sum_probs=20.4
Q ss_pred eEEEEEeCCCccEEEeeeeeecccCCHHHHHHHHHH
Q 042834 24 GLGVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVN 59 (98)
Q Consensus 24 g~G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~ 59 (98)
-+|+||-+ +|+++..+ .. ...|||..||.
T Consensus 23 pVGAVIVk-DGeIIA~G-e~-----gTaHAEInAIr 51 (278)
T 3g8q_A 23 TVTAALLE-GGEIVAVE-EA-----DDEHAERKLVR 51 (278)
T ss_dssp SCEEEEEE-TTEEEEEE-EC-----SSSCHHHHHHH
T ss_pred CEEEEEEE-CCEEEEec-CC-----CCCCHHHHHhC
Confidence 45666665 68888766 11 45799999986
No 107
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=23.03 E-value=1.3e+02 Score=18.12 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=27.6
Q ss_pred EEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHC
Q 042834 26 GVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNA 68 (98)
Q Consensus 26 G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~ 68 (98)
..++.|.+|.++......... .....|++..+.+|+.....
T Consensus 129 ~~~lid~~G~i~~~~~g~~~~--~~~~~ell~~l~~l~~~~~~ 169 (202)
T 1uul_A 129 GLFIIDPKQNLRQITVNDLPV--GRDVDEALRLVKAFQFVEKH 169 (202)
T ss_dssp EEEEECTTSBEEEEEEECTTB--CCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCEEEEEEeCCCCC--CCCHHHHHHHHHHhhhhhhc
Confidence 478889999998875443221 23467888888888865433
No 108
>2ge3_A Probable acetyltransferase; structural GEN PSI, protein structure initiative, midwest center for struc genomics, MCSG; HET: ACO; 2.25A {Agrobacterium tumefaciens} SCOP: d.108.1.1
Probab=22.68 E-value=77 Score=17.99 Aligned_cols=33 Identities=9% Similarity=0.107 Sum_probs=22.8
Q ss_pred HHHHHHHHHHCCCccEEEEech--HHHHHHHhcCC
Q 042834 58 VNLGIQVAQNAKFLPIIVESDS--KEVVDLARNRN 90 (98)
Q Consensus 58 l~~aL~~a~~~g~~~v~~esDs--~~vv~~l~~~~ 90 (98)
+...++++.+.|+++|.++++. ...+....+.+
T Consensus 107 l~~~~~~a~~~g~~~i~l~v~~~N~~a~~~y~k~G 141 (170)
T 2ge3_A 107 MRRTLDAAHEFGLHRIELSVHADNARAIALYEKIG 141 (170)
T ss_dssp HHHHHHHHHHHTCCEEEEEEETTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCceEEEEEEEcCCHHHHHHHHHCC
Confidence 4567788888999999888764 44555555443
No 109
>2o28_A Glucosamine 6-phosphate N-acetyltransferase; structural genomics, structural genomics consortium, SGC; HET: 16G COA; 1.80A {Homo sapiens} PDB: 2huz_A* 3cxq_A* 3cxs_A 3cxp_A
Probab=22.51 E-value=1.2e+02 Score=17.43 Aligned_cols=33 Identities=9% Similarity=0.097 Sum_probs=24.0
Q ss_pred HHHHHHHHHHCCCccEEEEechHHHHHHHhcCCC
Q 042834 58 VNLGIQVAQNAKFLPIIVESDSKEVVDLARNRNC 91 (98)
Q Consensus 58 l~~aL~~a~~~g~~~v~~esDs~~vv~~l~~~~~ 91 (98)
+...++++.+.|+..|.+++.... +....+.++
T Consensus 138 l~~~~~~a~~~g~~~i~l~~~~~n-~~~y~k~GF 170 (184)
T 2o28_A 138 LSTLTLLSKKLNCYKITLECLPQN-VGFYKKFGY 170 (184)
T ss_dssp HHHHHHHHHHTTEEEEEEEECGGG-HHHHHTTTC
T ss_pred HHHHHHHHHHCCCCEEEEEecHHH-HHHHHHCCC
Confidence 445678888999999999887665 565555544
No 110
>3cjy_A Putative thioesterase; YP_496845.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE PGE; 1.70A {Novosphingobium aromaticivorans}
Probab=22.47 E-value=1.6e+02 Score=18.94 Aligned_cols=41 Identities=22% Similarity=0.266 Sum_probs=29.0
Q ss_pred CCCCCceEEEEecceeecCCCcceEEEEEeCCCccEEEeeee
Q 042834 1 TSPPNGWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAATVQ 42 (98)
Q Consensus 1 ~~P~~g~~k~n~D~s~~~~~~~~g~G~vird~~G~~i~~~~~ 42 (98)
++|..+|+-+-++..+..+ +.+-.-..|.|.+|+.+.....
T Consensus 213 r~~~~~Wll~~~~s~~a~~-Gr~~~~~~i~d~~G~lvAs~~Q 253 (259)
T 3cjy_A 213 GAAAPGWCLCDMIIPSSAS-GFAQGQVTLWDQSGRLLATGAQ 253 (259)
T ss_dssp CCBCSSCEEEEEEEEEEET-TEEEEEEEEECTTSCEEEEEEE
T ss_pred cCCCCCcEEEEEECcccCC-CeEEEEEEEECCCCCEEEEEEE
Confidence 3677889988888777765 3333344578999988876554
No 111
>3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.20A {Archaeoglobus fulgidus dsm 4304}
Probab=22.42 E-value=19 Score=23.69 Aligned_cols=19 Identities=11% Similarity=0.115 Sum_probs=15.1
Q ss_pred HHHHHCCCccEEEEechHH
Q 042834 63 QVAQNAKFLPIIVESDSKE 81 (98)
Q Consensus 63 ~~a~~~g~~~v~~esDs~~ 81 (98)
+.+...+..++.+|||+..
T Consensus 192 ~~v~~ipldrlLlETD~P~ 210 (261)
T 3guw_A 192 RIVAEHGPERFMLNSDAGY 210 (261)
T ss_dssp TGGGGCC-CCEEEECCCCC
T ss_pred HHHHhCCcceEEEecCCCC
Confidence 5567788999999999964
No 112
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=22.29 E-value=75 Score=18.96 Aligned_cols=15 Identities=13% Similarity=0.045 Sum_probs=12.4
Q ss_pred CCceEEEEecceeec
Q 042834 4 PNGWFKVNVDAAIKL 18 (98)
Q Consensus 4 ~~g~~k~n~D~s~~~ 18 (98)
...+|++||.|..+.
T Consensus 33 ~~~~V~LNVGG~~F~ 47 (140)
T 2nz0_B 33 QDELIVLNVSGRRFQ 47 (140)
T ss_dssp CCCEEEEEETTEEEE
T ss_pred CCCEEEEEECCEEEE
Confidence 457999999998874
No 113
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D
Probab=22.25 E-value=1.5e+02 Score=18.39 Aligned_cols=41 Identities=17% Similarity=0.170 Sum_probs=29.4
Q ss_pred EEEEeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHC
Q 042834 26 GVIIRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNA 68 (98)
Q Consensus 26 G~vird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~ 68 (98)
..++.|.+|.++......... .....|++..+.+|+.+...
T Consensus 162 ~~~lID~~G~I~~~~~g~~~~--~~~~~~il~~l~~l~~~~~~ 202 (222)
T 3ztl_A 162 GLFIIDPNGILRQITINDKPV--GRSVDETLRLLDAFQFVEKH 202 (222)
T ss_dssp EEEEECTTSEEEEEEEECTTB--CCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEECCCCeEEEEEecCCCC--CCCHHHHHHHHHHhhccccc
Confidence 478999999998876654332 23467888888888877543
No 114
>2xgf_A Long tail fiber protein P37; viral protein; 2.20A {Enterobacteria phage T4}
Probab=22.22 E-value=26 Score=23.22 Aligned_cols=15 Identities=20% Similarity=0.228 Sum_probs=11.0
Q ss_pred CCCCceEEEEecceeec
Q 042834 2 SPPNGWFKVNVDAAIKL 18 (98)
Q Consensus 2 ~P~~g~~k~n~D~s~~~ 18 (98)
-||.||++| ||..+.
T Consensus 41 ~~P~Gwl~c--nG~~~~ 55 (242)
T 2xgf_A 41 SVPAGFALM--EGQTFD 55 (242)
T ss_dssp SCCTTEEEC--BSCBCC
T ss_pred CCCCceEEE--CCEECC
Confidence 478899988 676553
No 115
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.14 E-value=78 Score=18.53 Aligned_cols=22 Identities=14% Similarity=-0.011 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHHHHHHHHCCC
Q 042834 49 DVAYMEAAAVNLGIQVAQNAKF 70 (98)
Q Consensus 49 ~~~~aE~~Al~~aL~~a~~~g~ 70 (98)
.-.+||-.|...|.++.+.+|+
T Consensus 71 rK~eAE~kAAA~AC~kLK~Lgl 92 (119)
T 2db2_A 71 KKIDAERQAAAAACQLFKGWGL 92 (119)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHHHHHcCc
Confidence 3478999999999999999886
No 116
>1qst_A TGCN5 histone acetyl transferase; GCN5-related N-acetyltransferase, COA binding protein; HET: EPE; 1.70A {Tetrahymena thermophila} SCOP: d.108.1.1 PDB: 1m1d_A* 1pu9_A* 1pua_A* 5gcn_A* 1qsr_A* 1q2d_A* 1q2c_A* 1qsn_A*
Probab=21.84 E-value=1.2e+02 Score=17.08 Aligned_cols=34 Identities=9% Similarity=0.036 Sum_probs=25.5
Q ss_pred HHHHHHHHHHCCCccEEEEechHHHHHHHhcCCCC
Q 042834 58 VNLGIQVAQNAKFLPIIVESDSKEVVDLARNRNCL 92 (98)
Q Consensus 58 l~~aL~~a~~~g~~~v~~esDs~~vv~~l~~~~~~ 92 (98)
+..+++++.+.|...+.+..+. ..+....+.++.
T Consensus 94 l~~~~~~~~~~g~~~l~~~~~n-~a~~~y~k~Gf~ 127 (160)
T 1qst_A 94 MNKFKDHMQKQNIEYLLTYADN-FAIGYFKKQGFT 127 (160)
T ss_dssp HHHHHHHHHHTTCCEEEEEECS-SSHHHHHHTTCB
T ss_pred HHHHHHHHHHCCCcEEEEeCcc-hhHHHHHHCCCE
Confidence 4466788888999999888887 677776665543
No 117
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=21.76 E-value=2e+02 Score=19.59 Aligned_cols=63 Identities=14% Similarity=0.153 Sum_probs=37.2
Q ss_pred cceEEEEEeCCC------ccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHCCCccEEEEechHHHHHHH
Q 042834 22 TAGLGVIIRDSR------GKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESDSKEVVDLA 86 (98)
Q Consensus 22 ~~g~G~vird~~------G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esDs~~vv~~l 86 (98)
..-+|-|+|++. -+|.......+.. +...+|+..+..+.+....+|+.++.++--...+++.+
T Consensus 120 l~y~g~vfR~e~p~~gR~REF~Q~g~ei~g~--~~~~aDaEvi~l~~~~l~~lgl~~~~i~l~~~gi~~~~ 188 (344)
T 1z7m_A 120 YSYFGKIFRKEKRHKGRSTENYQIGIELFGE--SADKSELEILSLALQVIEQLGLNKTVFEIGSAKFFQRL 188 (344)
T ss_dssp EEEEEECCCCCC-------CCEEEEEEEESS--CHHHHHHHHHHHHHHHHHHHTCSSEEEEEEEHHHHHHH
T ss_pred EEEECcEEccCCCCCCCcceeEEEEEEEEcC--CCcHHHHHHHHHHHHHHHHCCCCcEEEEECCHHHHHHH
Confidence 344566777653 2244444444432 34565565666678888899998887776555544444
No 118
>3t90_A Glucose-6-phosphate acetyltransferase 1; GNAT fold, glcnac biosynthesis, alpha/beta protein; HET: EPE; 1.50A {Arabidopsis thaliana}
Probab=21.53 E-value=1.1e+02 Score=16.56 Aligned_cols=34 Identities=6% Similarity=0.101 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHCCCccEEEEechHHHHHHHhcCCC
Q 042834 57 AVNLGIQVAQNAKFLPIIVESDSKEVVDLARNRNC 91 (98)
Q Consensus 57 Al~~aL~~a~~~g~~~v~~esDs~~vv~~l~~~~~ 91 (98)
.+...++++.+.|+..+.++++.... ....+.++
T Consensus 104 ll~~~~~~~~~~g~~~i~l~~~~~n~-~~y~k~GF 137 (149)
T 3t90_A 104 VVEFLMDHCKSMGCYKVILDCSVENK-VFYEKCGM 137 (149)
T ss_dssp HHHHHHHHHHHTTCSEEECCCCGGGH-HHHHTTTC
T ss_pred HHHHHHHHHHHCCCeEEEEeccccHH-HHHHHCCC
Confidence 35667788899999999998876655 55555544
No 119
>3d8p_A Acetyltransferase of GNAT family; NP_373092.1, structural GE joint center for structural genomics, JCSG, protein structu initiative; 2.20A {Staphylococcus aureus subsp}
Probab=21.37 E-value=1.1e+02 Score=16.73 Aligned_cols=35 Identities=9% Similarity=-0.007 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHCCCccEEEEech--HHHHHHHhcCCC
Q 042834 57 AVNLGIQVAQNAKFLPIIVESDS--KEVVDLARNRNC 91 (98)
Q Consensus 57 Al~~aL~~a~~~g~~~v~~esDs--~~vv~~l~~~~~ 91 (98)
.+..+++++.+.|+..|.++++. ...++...+.++
T Consensus 99 ll~~~~~~a~~~g~~~i~l~~~~~n~~a~~~y~k~GF 135 (163)
T 3d8p_A 99 LLDKVIMTCKEQNIDGIYLGTIDKFISAQYFYSNNGF 135 (163)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCeEEEEEecCCCHHHHHHHHHCCC
Confidence 34567788889999999988764 345555555543
No 120
>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A
Probab=21.18 E-value=95 Score=18.20 Aligned_cols=34 Identities=9% Similarity=0.274 Sum_probs=22.1
Q ss_pred ceEEEEecceeecCCCcceEEEEEeCCCccEEEee
Q 042834 6 GWFKVNVDAAIKLSDQTAGLGVIIRDSRGKAVAAT 40 (98)
Q Consensus 6 g~~k~n~D~s~~~~~~~~g~G~vird~~G~~i~~~ 40 (98)
.|++++-|..+..-....++++++.+ +|+++...
T Consensus 18 ~~~~v~~~~~~~~~~~~~~v~vii~~-~~~vLL~~ 51 (170)
T 1v8y_A 18 RILNLALEGRYEIVEHKPAVAVIALR-EGRMLFVR 51 (170)
T ss_dssp SSEEEEEETTEEEEEECCEEEEEEEE-TTEEEEEE
T ss_pred CeEEEEEEeeEEEEecCCeEEEEEEE-CCEEEEEE
Confidence 47788777544333344677777777 78887644
No 121
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Probab=20.89 E-value=1.5e+02 Score=18.03 Aligned_cols=61 Identities=7% Similarity=0.021 Sum_probs=37.3
Q ss_pred EEeCCCcc-EEEeeeeee-----cccCCHHHHHHHHHHHHHHHHHHCCCccEEEEec-------------hHHHHHHHhc
Q 042834 28 IIRDSRGK-AVAATVQKV-----SFRGDVAYMEAAAVNLGIQVAQNAKFLPIIVESD-------------SKEVVDLARN 88 (98)
Q Consensus 28 vird~~G~-~i~~~~~~~-----~~~~~~~~aE~~Al~~aL~~a~~~g~~~v~~esD-------------s~~vv~~l~~ 88 (98)
-+.|..|. .+...+.-. ..-+++..|.. |...+.+.+.++|+..|.+..- -+.++.+|..
T Consensus 43 tiTD~~G~~~~~~ssgg~~~k~~r~ksTpyAAq~-aa~~~a~~a~e~Gi~~v~V~vkG~gg~~~kgpG~GresairaL~~ 121 (151)
T 2xzm_K 43 HVTDLSGRETLVRVTGGMKVKADREESSPYAAMQ-AAIDVVNRCKELKINALHIKLRAKGGVETKQPGPGAQSALRALAR 121 (151)
T ss_dssp EEECTTCCSEEEECCHHHHCSSGGGGSCHHHHHH-HHHHHHHHHHHHTCCEEEEEEECCCTTSCCSCCSHHHHHHHHHHH
T ss_pred EEECCCCCEEEEEecCcceEeCCCCcCCHHHHHH-HHHHHHHHHHHcCCeEEEEEEEcCCCCCccCCCccHHHHHHHHHH
Confidence 46788886 433333211 11345666644 4456778888999988888762 4667777765
Q ss_pred C
Q 042834 89 R 89 (98)
Q Consensus 89 ~ 89 (98)
.
T Consensus 122 ~ 122 (151)
T 2xzm_K 122 S 122 (151)
T ss_dssp T
T ss_pred C
Confidence 3
No 122
>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.1.9.12
Probab=20.86 E-value=34 Score=22.10 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=13.6
Q ss_pred HHHHCCCccEEEEechH
Q 042834 64 VAQNAKFLPIIVESDSK 80 (98)
Q Consensus 64 ~a~~~g~~~v~~esDs~ 80 (98)
++...+..+|.||||+.
T Consensus 200 ~i~~~~~driL~eTD~P 216 (268)
T 1j6o_A 200 VVKRVGLEYIVLETDCP 216 (268)
T ss_dssp HHHHHCGGGEEECCCBT
T ss_pred HHHhCChhhEEEecCCC
Confidence 34566889999999985
No 123
>4h89_A GCN5-related N-acetyltransferase; N-acyltransferase superfamily, structural genomics, PSI-BIOL midwest center for structural genomics, MCSG; 1.37A {Kribbella flavida}
Probab=20.79 E-value=1.3e+02 Score=17.28 Aligned_cols=34 Identities=18% Similarity=0.079 Sum_probs=24.2
Q ss_pred HHHHHHHHHHCCCccEEEE---echHHHHHHHhcCCC
Q 042834 58 VNLGIQVAQNAKFLPIIVE---SDSKEVVDLARNRNC 91 (98)
Q Consensus 58 l~~aL~~a~~~g~~~v~~e---sDs~~vv~~l~~~~~ 91 (98)
+..++++|.+.|++.+.+. .++...+....+-++
T Consensus 110 l~~~~~~a~~~g~~~~~l~~~~~~N~~A~~~y~k~GF 146 (173)
T 4h89_A 110 CQDMIDWAGREGFRAIQFNAVVETNTVAVKLWQSLGF 146 (173)
T ss_dssp HHHHHHHHHHTTCSEEEEEEEETTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCcEEEEeeecccCHHHHHHHHHCCC
Confidence 4567889999999988764 345666666666554
No 124
>1yvk_A Hypothetical protein BSU33890; ALPHS-beta protein, structural genomics, PSI, protein structure initiative; HET: COA; 3.01A {Bacillus subtilis subsp} SCOP: d.108.1.1
Probab=20.56 E-value=1.3e+02 Score=17.16 Aligned_cols=34 Identities=15% Similarity=0.059 Sum_probs=24.4
Q ss_pred HHHHHHHHHHCCCccEEEEechHH--HHHHHhcCCC
Q 042834 58 VNLGIQVAQNAKFLPIIVESDSKE--VVDLARNRNC 91 (98)
Q Consensus 58 l~~aL~~a~~~g~~~v~~esDs~~--vv~~l~~~~~ 91 (98)
+..+++++.+.|+..+.+.++... .+....+.++
T Consensus 85 l~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF 120 (163)
T 1yvk_A 85 VLDAIEKAKKLGADTIEIGTGNSSIHQLSLYQKCGF 120 (163)
T ss_dssp HHHHHHHHHHTTCSEEEEEEETTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCEEEEEcCCCCHHHHHHHHHCCC
Confidence 456678888999999998887654 5666655543
No 125
>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.1.9.12
Probab=20.45 E-value=32 Score=21.91 Aligned_cols=18 Identities=11% Similarity=0.124 Sum_probs=14.3
Q ss_pred HHHHCCCccEEEEechHH
Q 042834 64 VAQNAKFLPIIVESDSKE 81 (98)
Q Consensus 64 ~a~~~g~~~v~~esDs~~ 81 (98)
++...+..++.||||+..
T Consensus 193 ~~~~~~~drll~eTD~P~ 210 (264)
T 1xwy_A 193 LLPLIPAEKLLIETDAPY 210 (264)
T ss_dssp HGGGSCGGGEEECCCTTS
T ss_pred HHHhCCHHHEEEecCCCC
Confidence 445678899999999953
No 126
>3n4p_A Terminase subunit UL89 protein; nuclease, human cytomegalovirus, HCMV, herpesviru packaging, DNA binding protein; 2.15A {Human herpesvirus 5} PDB: 3n4q_A 2kn8_A*
Probab=20.33 E-value=2.1e+02 Score=19.35 Aligned_cols=75 Identities=19% Similarity=0.162 Sum_probs=37.4
Q ss_pred CceEEEEecceeecCCCc--ceEEEEEeCCCccEEEeeeee----ecccCCHHHHHHHH-HHHHHHHHHH-CCCccEEEE
Q 042834 5 NGWFKVNVDAAIKLSDQT--AGLGVIIRDSRGKAVAATVQK----VSFRGDVAYMEAAA-VNLGIQVAQN-AKFLPIIVE 76 (98)
Q Consensus 5 ~g~~k~n~D~s~~~~~~~--~g~G~vird~~G~~i~~~~~~----~~~~~~~~~aE~~A-l~~aL~~a~~-~g~~~v~~e 76 (98)
...+-+|+|=+|-.+.+. .|+++|-|..+-.++.+.-.+ +.+.+....||..+ ++.++-...- ..--+|.+|
T Consensus 60 ~~tLYVYIDPAfT~N~~ASGTGIaavg~~~~~~Ii~GlEHfFL~~LTg~s~~~Ia~Ca~~~i~~vl~lHp~~~~vrvaVE 139 (279)
T 3n4p_A 60 GKTLYVYLDPAFTTNRKASGTGVAAVGAYRHQFLIYGLEHFFLRDLSESSEVAIAECAAHMIISVLSLHPYLDELRIAVE 139 (279)
T ss_dssp CCEEEEEEECC--------CEEEEEEEEETTEEEEEEEEEECC---CCCHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEB
T ss_pred CCeEEEEECCccccCCccccccEEEEEEecCcEEEEecHHHhHHHhcCchHHHHHHHHHHHHHHHHHhCcccceEEEEEe
Confidence 567889999999887655 556667777664445443333 23333445555333 3333333332 223578888
Q ss_pred ech
Q 042834 77 SDS 79 (98)
Q Consensus 77 sDs 79 (98)
+.|
T Consensus 140 GNS 142 (279)
T 3n4p_A 140 GNT 142 (279)
T ss_dssp CSS
T ss_pred cCc
Confidence 854
No 127
>1ufh_A YYCN protein; alpha and beta, fold, acetyltransferase, structural genomics, PSI, protein structure initiative; 2.20A {Bacillus subtilis subsp} SCOP: d.108.1.1
Probab=20.20 E-value=1.3e+02 Score=17.03 Aligned_cols=35 Identities=11% Similarity=-0.003 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHCCCccEEEEec--hHHHHHHHhcCCC
Q 042834 57 AVNLGIQVAQNAKFLPIIVESD--SKEVVDLARNRNC 91 (98)
Q Consensus 57 Al~~aL~~a~~~g~~~v~~esD--s~~vv~~l~~~~~ 91 (98)
.+...++++.+.|+.+|.++++ +...+..+.+.++
T Consensus 133 ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF 169 (180)
T 1ufh_A 133 ALAALDQAARSMGIRKLSLHVFAHNQTARKLYEQTGF 169 (180)
T ss_dssp HHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCCEEEEEeccCcHHHHHHHHHCCC
Confidence 3456678888999999999886 3455666665554
No 128
>1mk4_A Hypothetical protein YQJY; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: d.108.1.1
Probab=20.18 E-value=1.2e+02 Score=16.58 Aligned_cols=35 Identities=6% Similarity=0.018 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHCCCccEEEEech--HHHHHHHhcCCC
Q 042834 57 AVNLGIQVAQNAKFLPIIVESDS--KEVVDLARNRNC 91 (98)
Q Consensus 57 Al~~aL~~a~~~g~~~v~~esDs--~~vv~~l~~~~~ 91 (98)
.+..+++++.+.|...+.+.++. ...+....+.++
T Consensus 89 ll~~~~~~~~~~g~~~i~~~~~~~N~~a~~~y~k~Gf 125 (157)
T 1mk4_A 89 LYDVFIETVKQRGCTRVKCVTSPVNKVSIAYHTKLGF 125 (157)
T ss_dssp HHHHHHHHHHTTTCCEEEEEECTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCcEEEEEEcCCCHHHHHHHHHcCC
Confidence 35567788889999998888765 345555555443
No 129
>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237, structural GENO PSI, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=20.11 E-value=54 Score=20.68 Aligned_cols=17 Identities=29% Similarity=0.509 Sum_probs=13.8
Q ss_pred HHHHCCCccEEEEechH
Q 042834 64 VAQNAKFLPIIVESDSK 80 (98)
Q Consensus 64 ~a~~~g~~~v~~esDs~ 80 (98)
++...+..+|.+|||..
T Consensus 190 ~i~~~~~dril~gSD~P 206 (265)
T 2gzx_A 190 VAKHVSMERLLVETDAP 206 (265)
T ss_dssp HHHHSCTTTEEECCCTT
T ss_pred HHHhCChhhEEEccCCC
Confidence 34567899999999984
No 130
>3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid, pantoate beta alanine ligase, ATP-binding, cytoplasm, ligase; HET: ATP; 2.10A {Brucella melitensis}
Probab=20.00 E-value=48 Score=22.83 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=27.4
Q ss_pred EeCCCccEEEeeeeeecccCCHHHHHHHHHHHHHHHHHHC
Q 042834 29 IRDSRGKAVAATVQKVSFRGDVAYMEAAAVNLGIQVAQNA 68 (98)
Q Consensus 29 ird~~G~~i~~~~~~~~~~~~~~~aE~~Al~~aL~~a~~~ 68 (98)
+|+.+|.- .+++....+...-.++.+|..+|+.+.+.
T Consensus 197 vRe~DGLA---~SSRN~yLs~eeR~~A~~L~~aL~~a~~~ 233 (314)
T 3inn_A 197 VREDDGLA---CSSRNVYLTPEQRRAAIIVPQALDEADRL 233 (314)
T ss_dssp CBCTTSCB---CCGGGGGCCHHHHHHTTHHHHHHHHHHHH
T ss_pred EECCCCCe---eccCCccCCHHHHHHHHHHHHHHHHHHHH
Confidence 89999964 44455555566777899999999988753
Done!