Query 042838
Match_columns 162
No_of_seqs 126 out of 837
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 17:36:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042838.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042838hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ljo_A Non-specific lipid-tran 32.0 8.7 0.0003 25.8 -0.2 20 16-36 71-90 (93)
2 1t12_A LTP 1, nonspecific lipi 28.3 15 0.00052 24.4 0.5 20 16-36 70-89 (91)
3 2alg_A Non-specific lipid tran 24.6 15 0.00051 24.4 -0.1 19 16-35 71-89 (92)
4 1bwo_A NS-LTP1, nonspecific li 22.6 16 0.00053 24.2 -0.3 19 16-35 70-88 (90)
5 1afh_A Maize nonspecific lipid 22.5 14 0.00049 24.5 -0.5 20 16-36 72-91 (93)
6 1siy_A LTP 1, NS-LTP1, nonspec 21.4 20 0.0007 23.6 0.1 20 16-36 70-89 (91)
7 1vyc_A Bucain, neurotoxin; sna 21.2 38 0.0013 20.9 1.3 25 131-159 38-62 (65)
8 3rm2_L Thrombin light chain; s 21.0 37 0.0013 19.0 1.1 15 28-42 2-17 (36)
9 2jr3_A Pelovaterin; beta-defen 18.6 31 0.0011 19.3 0.4 11 147-157 30-41 (42)
10 1ff4_A Muscarinic toxin/acetyl 18.4 47 0.0016 20.4 1.3 25 131-159 38-62 (65)
No 1
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=31.96 E-value=8.7 Score=25.82 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=15.2
Q ss_pred cCCcCCeeeccCCCCCCCCCC
Q 042838 16 QYDCGNATIRYPFGIGEGCYF 36 (162)
Q Consensus 16 ~~~CGnv~IpYPFGig~~C~~ 36 (162)
|.+|| |+||||+.-.-.|..
T Consensus 71 P~~Cg-V~~p~~Is~~~dC~~ 90 (93)
T 2ljo_A 71 PGKCG-VNIPYKISTTTNCNT 90 (93)
T ss_dssp HHHHT-CCCSSCCSTTCCGGG
T ss_pred hHhcC-CCCCCCCCCCCCCCC
Confidence 55887 888999887767754
No 2
>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}
Probab=28.25 E-value=15 Score=24.35 Aligned_cols=20 Identities=25% Similarity=0.541 Sum_probs=13.9
Q ss_pred cCCcCCeeeccCCCCCCCCCC
Q 042838 16 QYDCGNATIRYPFGIGEGCYF 36 (162)
Q Consensus 16 ~~~CGnv~IpYPFGig~~C~~ 36 (162)
|.+|| |++|||....-.|..
T Consensus 70 P~~C~-v~~p~~is~~~dC~~ 89 (91)
T 1t12_A 70 PSTCG-VNIPYKISPSTDCSK 89 (91)
T ss_dssp HHHTT-CCCSSCSSSSSCCTT
T ss_pred HHHcC-CCCCCCCCCCCCCcc
Confidence 56787 678888776556753
No 3
>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*
Probab=24.61 E-value=15 Score=24.38 Aligned_cols=19 Identities=26% Similarity=0.648 Sum_probs=12.0
Q ss_pred cCCcCCeeeccCCCCCCCCC
Q 042838 16 QYDCGNATIRYPFGIGEGCY 35 (162)
Q Consensus 16 ~~~CGnv~IpYPFGig~~C~ 35 (162)
|.+|| |.||||....-.|.
T Consensus 71 P~~Cg-v~~p~~is~~~dC~ 89 (92)
T 2alg_A 71 PGKCG-VSIPYKISASTNCA 89 (92)
T ss_dssp HHHTT-CCCSSCSSTTSCGG
T ss_pred HHHcC-CCCCCCCCCCCCCc
Confidence 45787 66777766544554
No 4
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=22.63 E-value=16 Score=24.23 Aligned_cols=19 Identities=21% Similarity=0.655 Sum_probs=11.9
Q ss_pred cCCcCCeeeccCCCCCCCCC
Q 042838 16 QYDCGNATIRYPFGIGEGCY 35 (162)
Q Consensus 16 ~~~CGnv~IpYPFGig~~C~ 35 (162)
|.+|| |++|||....-.|.
T Consensus 70 P~~C~-v~~p~~is~~~dC~ 88 (90)
T 1bwo_A 70 PPKCG-VNLPYTISLNIDCS 88 (90)
T ss_dssp HHHHT-CCCSSCCCTTCCGG
T ss_pred HHHcC-CCCCCCCCCCCCCC
Confidence 55787 66777766544553
No 5
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=22.52 E-value=14 Score=24.53 Aligned_cols=20 Identities=25% Similarity=0.612 Sum_probs=13.8
Q ss_pred cCCcCCeeeccCCCCCCCCCC
Q 042838 16 QYDCGNATIRYPFGIGEGCYF 36 (162)
Q Consensus 16 ~~~CGnv~IpYPFGig~~C~~ 36 (162)
|.+|| |++|||....-.|..
T Consensus 72 P~~C~-v~~p~~is~~~dC~~ 91 (93)
T 1afh_A 72 PSKCG-VSIPYTISTSTDCSR 91 (93)
T ss_dssp HHHHH-CCCSSCCSTTCCSSS
T ss_pred HHHcC-CCCCCCCCCCCCCcc
Confidence 55777 678888776656753
No 6
>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}
Probab=21.42 E-value=20 Score=23.64 Aligned_cols=20 Identities=25% Similarity=0.569 Sum_probs=13.1
Q ss_pred cCCcCCeeeccCCCCCCCCCC
Q 042838 16 QYDCGNATIRYPFGIGEGCYF 36 (162)
Q Consensus 16 ~~~CGnv~IpYPFGig~~C~~ 36 (162)
|.+|| |.+|||....-.|..
T Consensus 70 P~~Cg-v~~p~~is~~~dC~~ 89 (91)
T 1siy_A 70 PGKCG-VNIPYKISTSTNCNS 89 (91)
T ss_dssp HHHHT-CCCSSCSCTTSCSST
T ss_pred HHHcC-CCCCCCCCCCCCCcc
Confidence 55787 667777665556653
No 7
>1vyc_A Bucain, neurotoxin; snake neurotoxin; NMR {Bungarus candidus} SCOP: g.7.1.1 PDB: 2h8u_A
Probab=21.22 E-value=38 Score=20.89 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=16.5
Q ss_pred eeeceEeecCCCCCCCCCcCCCCcccCCC
Q 042838 131 VFGGCLSISTCDPALNPGCYDFLCALPQN 159 (162)
Q Consensus 131 ~~~gC~s~C~~~~~~~~~C~G~gCC~~~i 159 (162)
+.-||++.|+ .... + .-+-||+++.
T Consensus 38 i~rGCa~tCP-~~~~-~--~~i~CC~TD~ 62 (65)
T 1vyc_A 38 VKRGCVATCP-KPWK-N--EIIQCCAKDK 62 (65)
T ss_dssp EEEEEESSCC-CCCS-C--CCEEEESSSS
T ss_pred EECCccCcCc-CCCC-C--ceeEecCCCC
Confidence 4579999999 4432 1 3456787763
No 8
>3rm2_L Thrombin light chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_L* 1a3e_L* 1a46_L* 1a4w_L* 1a5g_L* 1a61_L* 1abi_L* 1abj_L* 1ad8_L* 1ae8_L* 1afe_L* 1a3b_L* 1ai8_L* 1aix_L* 1awf_L* 1awh_A* 1ay6_L* 1b5g_L* 1b7x_A 1ba8_A* ...
Probab=20.97 E-value=37 Score=18.96 Aligned_cols=15 Identities=40% Similarity=0.753 Sum_probs=8.4
Q ss_pred CCCC-CCCCCCCCCeE
Q 042838 28 FGIG-EGCYFDKSFEV 42 (162)
Q Consensus 28 FGig-~~C~~~~gF~l 42 (162)
||.| ++|+..+.|+-
T Consensus 2 fG~ge~~CG~rPlfEk 17 (36)
T 3rm2_L 2 FGSGEADCGLRPLFEK 17 (36)
T ss_dssp ----CTTTTCCTTTGG
T ss_pred CcccccccccCchhhh
Confidence 7887 48998778874
No 9
>2jr3_A Pelovaterin; beta-defensin like peptide, chinese SOFT-shelled turtle eggshell, antibacterial peptide, eggshell matrix; NMR {Pelodiscus sinensis}
Probab=18.61 E-value=31 Score=19.28 Aligned_cols=11 Identities=36% Similarity=0.736 Sum_probs=7.9
Q ss_pred CCcCC-CCcccC
Q 042838 147 PGCYD-FLCALP 157 (162)
Q Consensus 147 ~~C~G-~gCC~~ 157 (162)
-.|+| .|||++
T Consensus 30 vgcsggfgccri 41 (42)
T 2jr3_A 30 VGCSGGFGCCRI 41 (42)
T ss_dssp SSSCTTEEBCBC
T ss_pred eeccCCcceeec
Confidence 36765 799985
No 10
>1ff4_A Muscarinic toxin/acetylcholine receptor binding P; three fingers motif; 1.50A {Dendroaspis angusticeps} SCOP: g.7.1.1
Probab=18.40 E-value=47 Score=20.43 Aligned_cols=25 Identities=12% Similarity=0.266 Sum_probs=15.8
Q ss_pred eeeceEeecCCCCCCCCCcCCCCcccCCC
Q 042838 131 VFGGCLSISTCDPALNPGCYDFLCALPQN 159 (162)
Q Consensus 131 ~~~gC~s~C~~~~~~~~~C~G~gCC~~~i 159 (162)
+.-||++.|+ .... + .-+-||+++.
T Consensus 38 i~rGCa~tCp-~~~~-~--~~v~CC~TD~ 62 (65)
T 1ff4_A 38 IIKGCAATCP-KVDN-N--DPIRCCGTDK 62 (65)
T ss_dssp EEEEEESSCC-CCCS-C--CCEEEECSTT
T ss_pred EECCccCcCc-CCCC-C--ceeEecCCCC
Confidence 3479999999 4432 1 2356777763
Done!