Query 042838
Match_columns 162
No_of_seqs 126 out of 837
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 17:36:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042838.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042838hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mida_ a.52.1.1 (A:) Plant no 22.3 8.6 0.00063 24.0 -0.0 19 16-35 70-88 (91)
2 d1fk5a_ a.52.1.1 (A:) Plant no 20.4 10 0.00073 23.7 0.0 19 16-35 72-90 (93)
3 d1mr6a_ g.7.1.1 (A:) Bungaroto 13.5 38 0.0028 20.0 1.5 25 131-159 41-65 (68)
4 d1hx2a_ g.22.1.2 (A:) BSTI {Fi 11.2 53 0.0039 18.4 1.6 30 13-42 15-46 (60)
5 d1qfha1 b.1.18.10 (A:646-749) 10.6 1.2E+02 0.0089 18.0 3.5 10 96-105 92-101 (104)
6 d2akla2 g.41.3.5 (A:3-40) Hypo 10.5 49 0.0035 17.3 1.1 10 11-21 2-11 (38)
7 d2cona1 g.41.15.1 (A:8-73) RNA 9.7 43 0.0031 19.6 0.7 7 14-21 25-31 (66)
8 d1lsia_ g.7.1.1 (A:) Long neur 9.0 47 0.0034 19.5 0.7 24 131-158 37-60 (66)
9 d2dloa2 g.39.1.3 (A:43-75) Thy 8.8 77 0.0056 16.0 1.5 14 96-110 8-21 (33)
10 d1ff4a_ g.7.1.1 (A:) Muscarini 8.4 64 0.0046 18.8 1.2 21 134-158 41-61 (65)
No 1
>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=22.27 E-value=8.6 Score=23.97 Aligned_cols=19 Identities=16% Similarity=0.473 Sum_probs=13.3
Q ss_pred cCCcCCeeeccCCCCCCCCC
Q 042838 16 QYDCGNATIRYPFGIGEGCY 35 (162)
Q Consensus 16 ~~~CGnv~IpYPFGig~~C~ 35 (162)
|.+|| |++|||+.-.-.|.
T Consensus 70 P~~C~-v~~p~pis~~~dC~ 88 (91)
T d1mida_ 70 PSKCN-VNVPYTISPDIDCS 88 (91)
T ss_dssp HHHTT-CCCCSCCCTTCCGG
T ss_pred hHhcC-CCCCCCCCCCCCCC
Confidence 55787 67888877655554
No 2
>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}
Probab=20.44 E-value=10 Score=23.70 Aligned_cols=19 Identities=26% Similarity=0.700 Sum_probs=13.4
Q ss_pred cCCcCCeeeccCCCCCCCCC
Q 042838 16 QYDCGNATIRYPFGIGEGCY 35 (162)
Q Consensus 16 ~~~CGnv~IpYPFGig~~C~ 35 (162)
|.+|| |++|||+.-.-.|.
T Consensus 72 P~~C~-v~l~~pis~~~dCs 90 (93)
T d1fk5a_ 72 PSKCG-VSIPYTISTSTDCS 90 (93)
T ss_dssp HHHTT-CCCSSCCSTTCCGG
T ss_pred hHhcC-CCCCCCCCCCCCCC
Confidence 56787 88888877655564
No 3
>d1mr6a_ g.7.1.1 (A:) Bungarotoxin {Many-banded krait (Bungarus multicinctus), gamma-bungarotoxin [TaxId: 8616]}
Probab=13.49 E-value=38 Score=19.99 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=16.0
Q ss_pred eeeceEeecCCCCCCCCCcCCCCcccCCC
Q 042838 131 VFGGCLSISTCDPALNPGCYDFLCALPQN 159 (162)
Q Consensus 131 ~~~gC~s~C~~~~~~~~~C~G~gCC~~~i 159 (162)
+.-||+.+|+ .... + --+-||.++.
T Consensus 41 i~rGCaaTCP-~~~~-~--~~v~CCsTD~ 65 (68)
T d1mr6a_ 41 IRRECAATCP-PSKL-G--LTVFCCTTDN 65 (68)
T ss_dssp CEEEECSSSS-SCCS-S--SCCCCBSSSS
T ss_pred EecceeCcCc-CCCC-C--CEEEEeCCcc
Confidence 4579999999 4432 1 1367777653
No 4
>d1hx2a_ g.22.1.2 (A:) BSTI {Fire-bellied toad (Bombina bombina) [TaxId: 8345]}
Probab=11.24 E-value=53 Score=18.39 Aligned_cols=30 Identities=10% Similarity=0.118 Sum_probs=16.9
Q ss_pred CcccCCcCCeeeccCCCC--CCCCCCCCCCeE
Q 042838 13 DLCQYDCGNATIRYPFGI--GEGCYFDKSFEV 42 (162)
Q Consensus 13 ~~C~~~CGnv~IpYPFGi--g~~C~~~~gF~l 42 (162)
+.||.+|.+++.+-.=.. -+||+=++||-|
T Consensus 15 s~Cp~tC~~~~~~~~C~~~C~eGC~Cp~G~vl 46 (60)
T d1hx2a_ 15 SSCPKTCETRNKLVLCDKKCNQRCGCISGTVL 46 (60)
T ss_dssp CSSCCCTTTCCCSSSCSSCCCSEEEECTTCEE
T ss_pred CCCccccCCCCCCCCCCCCCCccCCCCCCEeE
Confidence 569999998764321111 245555556554
No 5
>d1qfha1 b.1.18.10 (A:646-749) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]}
Probab=10.59 E-value=1.2e+02 Score=17.98 Aligned_cols=10 Identities=10% Similarity=0.285 Sum_probs=7.2
Q ss_pred ccCCCCeEec
Q 042838 96 SLSVSPFTFS 105 (162)
Q Consensus 96 ~l~~~pF~~S 105 (162)
.++++||.+.
T Consensus 92 ~i~gSPf~v~ 101 (104)
T d1qfha1 92 PIKNMPIDVK 101 (104)
T ss_dssp ECBTCSEEEE
T ss_pred ECCCCCEEEE
Confidence 3578899764
No 6
>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=10.55 E-value=49 Score=17.31 Aligned_cols=10 Identities=20% Similarity=0.713 Sum_probs=6.6
Q ss_pred cCCcccCCcCC
Q 042838 11 SKDLCQYDCGN 21 (162)
Q Consensus 11 ~~~~C~~~CGn 21 (162)
++|.|| +|+.
T Consensus 2 ~lP~CP-~C~s 11 (38)
T d2akla2 2 TLPPCP-QCNS 11 (38)
T ss_dssp CSCCCT-TTCC
T ss_pred CCCcCC-CCCC
Confidence 467787 7763
No 7
>d2cona1 g.41.15.1 (A:8-73) RNA-binding protein NOB1 (Nin one binding) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.65 E-value=43 Score=19.58 Aligned_cols=7 Identities=57% Similarity=1.654 Sum_probs=3.6
Q ss_pred cccCCcCC
Q 042838 14 LCQYDCGN 21 (162)
Q Consensus 14 ~C~~~CGn 21 (162)
-|| +|||
T Consensus 25 FCp-kCGn 31 (66)
T d2cona1 25 FCG-HCGN 31 (66)
T ss_dssp SCS-SSCC
T ss_pred cCc-ccCC
Confidence 355 5554
No 8
>d1lsia_ g.7.1.1 (A:) Long neurotoxin 1 (component LSIII) {Sea snake (Laticauda semifasciata) [TaxId: 8631]}
Probab=8.96 E-value=47 Score=19.48 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=14.4
Q ss_pred eeeceEeecCCCCCCCCCcCCCCcccCC
Q 042838 131 VFGGCLSISTCDPALNPGCYDFLCALPQ 158 (162)
Q Consensus 131 ~~~gC~s~C~~~~~~~~~C~G~gCC~~~ 158 (162)
+.-||+.+|+ .... + .-+-||.++
T Consensus 37 i~rGCaATCP-~~k~-~--~~i~CCsTD 60 (66)
T d1lsia_ 37 LEFGCAATCP-SVNT-G--TEIKCCSAD 60 (66)
T ss_dssp CEEEEESSCC-CCCS-S--CEEEEESST
T ss_pred EEcceECcCC-CCCC-C--CEEEEeCCC
Confidence 3479999998 4432 1 125666665
No 9
>d2dloa2 g.39.1.3 (A:43-75) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.76 E-value=77 Score=15.95 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=10.6
Q ss_pred ccCCCCeEecCCCCE
Q 042838 96 SLSVSPFTFSPWDNR 110 (162)
Q Consensus 96 ~l~~~pF~~S~~~N~ 110 (162)
.|.|-||++.. .|+
T Consensus 8 ~LDGvPFtvD~-~n~ 21 (33)
T d2dloa2 8 GLDGIPFTVDA-TSQ 21 (33)
T ss_dssp BCTTSCEECCT-TCC
T ss_pred ccCCCcEEEcC-CCC
Confidence 46789999987 454
No 10
>d1ff4a_ g.7.1.1 (A:) Muscarinic toxin {Green mamba (Dendroaspis angusticeps) [TaxId: 8618]}
Probab=8.37 E-value=64 Score=18.76 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=0.0
Q ss_pred ceEeecCCCCCCCCCcCCCCcccCC
Q 042838 134 GCLSISTCDPALNPGCYDFLCALPQ 158 (162)
Q Consensus 134 gC~s~C~~~~~~~~~C~G~gCC~~~ 158 (162)
||+.+|+ ....... +-||.++
T Consensus 41 GCaaTCP-~~~~~~~---v~CCsTD 61 (65)
T d1ff4a_ 41 GCAATCP-KVDNNDP---IRCCGTD 61 (65)
T ss_dssp EEESSCC-CCCSCCC---EEEECST
T ss_pred eeeCcCC-CCCCCCE---EEEeCCc
Done!