BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042839
         (207 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2GMH|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
           Ubiquinone Oxidoreductase In Complexed With Ubiquinone
 pdb|2GMH|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
           Ubiquinone Oxidoreductase In Complexed With Ubiquinone
 pdb|2GMJ|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
           Ubiquinone Oxidoreductase
 pdb|2GMJ|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
           Ubiquinone Oxidoreductase
          Length = 584

 Score = 28.9 bits (63), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 4/46 (8%)

Query: 76  LTSIINIRPKYCGILG---SVILIGYQSWLIRGLNVYLLSNERGTD 118
           L S+ NIRP   GILG    +I  G   W+ RG+  + L + +G+D
Sbjct: 415 LYSVRNIRPSCHGILGVYGGMIYTGIFYWIFRGMEPWTLKH-KGSD 459


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.140    0.435 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,337,424
Number of Sequences: 62578
Number of extensions: 200775
Number of successful extensions: 392
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 391
Number of HSP's gapped (non-prelim): 1
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)