Query 042839
Match_columns 207
No_of_seqs 131 out of 245
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 17:37:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042839.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042839hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x58_A Hypothetical protein 49 22.2 16 0.00056 24.7 -0.3 10 56-65 22-31 (62)
2 2krt_A Conserved hypothetical 22.0 13 0.00043 28.3 -1.0 14 117-130 73-86 (121)
3 3k63_A Conserved hypothetical 19.2 17 0.00057 27.7 -0.8 14 117-130 68-81 (126)
4 1zt2_A DNA primase small subun 16.2 42 0.0014 29.7 0.9 26 122-147 300-326 (330)
5 4hn1_A Putative 3-epimerase in 13.9 38 0.0013 27.8 -0.0 20 46-65 128-147 (201)
6 3ejk_A DTDP sugar isomerase; Y 13.5 37 0.0013 27.1 -0.2 20 46-65 136-155 (174)
7 3ryk_A DTDP-4-dehydrorhamnose 8.7 73 0.0025 26.1 -0.0 20 46-65 154-173 (205)
8 2la2_A Cecropin, papiliocin; a 6.6 1.3E+02 0.0043 18.4 0.3 8 64-71 2-9 (38)
9 1g92_A Poneratoxin, PAC-TX; ne 6.2 1.7E+02 0.0059 16.0 0.7 7 35-41 2-8 (26)
10 1oi6_A PCZA361.16; epimerase, 5.2 1.4E+02 0.0049 24.2 -0.0 21 45-65 130-150 (205)
No 1
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=22.18 E-value=16 Score=24.72 Aligned_cols=10 Identities=50% Similarity=0.966 Sum_probs=8.1
Q ss_pred cccccccchH
Q 042839 56 HVGEYGVHWN 65 (207)
Q Consensus 56 hvtEYGvHWN 65 (207)
-|.|||.||+
T Consensus 22 gV~k~G~~W~ 31 (62)
T 1x58_A 22 GVKTMGNHWN 31 (62)
T ss_dssp HHHHHCSCHH
T ss_pred HHHHHhHhHH
Confidence 4678999997
No 2
>2krt_A Conserved hypothetical membrane lipoprotein; NESG, UUR17A, structural genomics, PSI-2, protein structure initiative; NMR {Ureaplasma parvum}
Probab=22.02 E-value=13 Score=28.25 Aligned_cols=14 Identities=36% Similarity=0.499 Sum_probs=12.5
Q ss_pred cccccccchhhhhh
Q 042839 117 TDIISQNKEGIFSI 130 (207)
Q Consensus 117 ~~~lsaNrEGi~S~ 130 (207)
+||.+|||||=+++
T Consensus 73 ~~~~~ANk~G~l~l 86 (121)
T 2krt_A 73 GDFGSANKNGTLKL 86 (121)
T ss_dssp SCHHHHHHHCEEEE
T ss_pred CCcccccccceeEE
Confidence 48999999998886
No 3
>3k63_A Conserved hypothetical membrane lipoprotein; Q9PRA0, PF04200, DUF1976, UUR17A, NESG., structural genomics, PSI-2, protein structure initiative; 2.49A {Ureaplasma parvum} PDB: 3jvc_A
Probab=19.19 E-value=17 Score=27.68 Aligned_cols=14 Identities=36% Similarity=0.499 Sum_probs=12.4
Q ss_pred cccccccchhhhhh
Q 042839 117 TDIISQNKEGIFSI 130 (207)
Q Consensus 117 ~~~lsaNrEGi~S~ 130 (207)
.+|.+|||||-+++
T Consensus 68 ~d~~~ANk~G~l~l 81 (126)
T 3k63_A 68 GDFGSANKNGTLKL 81 (126)
T ss_dssp SSHHHHHHHTCEEE
T ss_pred CCcccccccceeEE
Confidence 38999999999887
No 4
>1zt2_A DNA primase small subunit; heterodimeric complex, replication, transferase; HET: DNA; 3.33A {Sulfolobus solfataricus} SCOP: d.264.1.1
Probab=16.16 E-value=42 Score=29.65 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=22.2
Q ss_pred ccchh-hhhhhhHHHHHHHHHhhccee
Q 042839 122 QNKEG-IFSIFGYWGLYLVGVQLGHYI 147 (207)
Q Consensus 122 aNrEG-i~S~~GY~aiyl~g~~~G~~i 147 (207)
--+|| ..++|.|.|+||++..++...
T Consensus 300 ~~~~g~~~~~p~~~avyl~~~g~a~~~ 326 (330)
T 1zt2_A 300 KLNRGIPIKIKSSIGIYLHLRNLGEVK 326 (330)
T ss_dssp EECTTCCEEEEHHHHHHHHHTTSEEEE
T ss_pred ccCCCcceEecHHHHHHHHhcCcEEEE
Confidence 34678 999999999999999988753
No 5
>4hn1_A Putative 3-epimerase in D-allose pathway; 3'-monoepimerase, natural product, deoxysugar, chalcomycin, mycinose, cupin fold; HET: TYD THM; 1.60A {Streptomyces bikiniensis} PDB: 4hmz_A* 4hn0_A
Probab=13.88 E-value=38 Score=27.82 Aligned_cols=20 Identities=10% Similarity=-0.237 Sum_probs=17.4
Q ss_pred hhhccccccccccccccchH
Q 042839 46 VSTTGVDYQVHVGEYGVHWN 65 (207)
Q Consensus 46 ~~vk~~~Y~ehvtEYGvHWN 65 (207)
+.-|..+|..+..|.|++||
T Consensus 128 ~~Y~~t~~Y~p~~e~~i~w~ 147 (201)
T 4hn1_A 128 LVFLCSSGYAPAREHSVNPL 147 (201)
T ss_dssp EEEEESSCCCGGGEEECCTT
T ss_pred EEEeCCCCcChhhccccCCC
Confidence 35678899999999999998
No 6
>3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp}
Probab=13.49 E-value=37 Score=27.13 Aligned_cols=20 Identities=5% Similarity=-0.248 Sum_probs=17.2
Q ss_pred hhhccccccccccccccchH
Q 042839 46 VSTTGVDYQVHVGEYGVHWN 65 (207)
Q Consensus 46 ~~vk~~~Y~ehvtEYGvHWN 65 (207)
+..|..+|..+..|+|++||
T Consensus 136 ~ly~~s~~Y~p~~e~~i~~~ 155 (174)
T 3ejk_A 136 VANCTDIPHRQGESERAPQD 155 (174)
T ss_dssp EEEEESSCCCTTSEEECCTT
T ss_pred EEEECCCccCCCCCcccCCC
Confidence 45778888889999999998
No 7
>3ryk_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, STRU genomics, infectious diseases; HET: TYD; 1.63A {Bacillus anthracis str}
Probab=8.65 E-value=73 Score=26.11 Aligned_cols=20 Identities=30% Similarity=0.395 Sum_probs=17.6
Q ss_pred hhhccccccccccccccchH
Q 042839 46 VSTTGVDYQVHVGEYGVHWN 65 (207)
Q Consensus 46 ~~vk~~~Y~ehvtEYGvHWN 65 (207)
+..|..+|..+..|.|++||
T Consensus 154 ~~Y~~s~~Y~p~~e~~i~~~ 173 (205)
T 3ryk_A 154 VMYKVDEYYSADHDSGVLWN 173 (205)
T ss_dssp EEEEESSCCCTTTEEECCTT
T ss_pred EEEEcCCCcCCCCccccCCC
Confidence 45788899999999999998
No 8
>2la2_A Cecropin, papiliocin; antimicrobial peptide, cecropin-like peptide, AN inflammatory activity, antimicrobial protein; NMR {Papilio xuthus}
Probab=6.58 E-value=1.3e+02 Score=18.41 Aligned_cols=8 Identities=25% Similarity=0.941 Sum_probs=5.3
Q ss_pred hHHHHHHH
Q 042839 64 WNFFFTLA 71 (207)
Q Consensus 64 WNFFfTLa 71 (207)
||||=-+=
T Consensus 2 w~~FK~iE 9 (38)
T 2la2_A 2 WKIFKKIE 9 (38)
T ss_dssp CHHHHHHH
T ss_pred chHHHHHH
Confidence 77776554
No 9
>1g92_A Poneratoxin, PAC-TX; neurotoxin, sodium channel inhibitor; NMR {Synthetic} SCOP: j.19.1.2
Probab=6.16 E-value=1.7e+02 Score=15.98 Aligned_cols=7 Identities=57% Similarity=1.113 Sum_probs=3.7
Q ss_pred hhHHhhh
Q 042839 35 GPLILLG 41 (207)
Q Consensus 35 ~pLl~LG 41 (207)
+||++||
T Consensus 2 lpllilg 8 (26)
T 1g92_A 2 LPLLILG 8 (26)
T ss_dssp HHHHHHH
T ss_pred chHHHHH
Confidence 3555555
No 10
>1oi6_A PCZA361.16; epimerase, vancomycin group antibiotic, EVAD, isomerase; HET: TMP; 1.4A {Amycolatopsis orientalis} SCOP: b.82.1.1 PDB: 1ofn_A* 1wa4_A
Probab=5.15 E-value=1.4e+02 Score=24.22 Aligned_cols=21 Identities=14% Similarity=-0.062 Sum_probs=17.7
Q ss_pred hhhhccccccccccccccchH
Q 042839 45 IVSTTGVDYQVHVGEYGVHWN 65 (207)
Q Consensus 45 ~~~vk~~~Y~ehvtEYGvHWN 65 (207)
.+..|..+|..+..|-|++||
T Consensus 130 ~~~y~~s~~Y~p~~e~~i~~~ 150 (205)
T 1oi6_A 130 VMSYMLSRSYVTQDELALSAL 150 (205)
T ss_dssp EEEEEESSCCCGGGEEECCTT
T ss_pred EEEEecCCccCHhHCcCcCCC
Confidence 456778888888899999998
Done!