Query 042839
Match_columns 207
No_of_seqs 131 out of 245
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 17:38:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042839.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042839hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x58a1 a.4.1.1 (A:8-56) Hypot 29.2 4.8 0.00035 24.4 -0.3 9 57-65 16-24 (49)
2 d1d0gr1 g.24.1.1 (R:21-61) Dea 22.1 7.7 0.00056 22.3 -0.3 9 59-67 29-37 (41)
3 d1esoa_ b.1.8.1 (A:) Cu,Zn sup 11.5 23 0.0017 25.8 -0.1 10 53-62 45-54 (154)
4 d1ep0a_ b.82.1.1 (A:) dTDP-4-d 7.7 48 0.0035 24.4 0.5 18 48-65 131-148 (183)
5 d1x68a2 g.39.1.3 (A:37-70) Fou 7.4 50 0.0036 18.0 0.3 10 117-126 12-21 (34)
6 d1vcda1 d.113.1.1 (A:1-126) AP 7.2 23 0.0017 23.8 -1.6 12 1-12 1-12 (126)
7 d1gv2a2 a.4.1.3 (A:144-190) c- 6.4 36 0.0026 19.7 -0.7 10 56-65 15-24 (47)
8 d1gtta2 d.177.1.1 (A:214-429) 6.1 68 0.0049 24.0 0.6 13 50-62 16-28 (216)
9 d2apsa_ b.1.8.1 (A:) Cu,Zn sup 5.7 59 0.0043 23.5 -0.1 10 53-62 45-54 (155)
10 d2ixha1 b.82.1.1 (A:1-184) dTD 5.5 74 0.0054 23.4 0.5 17 49-65 135-151 (184)
No 1
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.15 E-value=4.8 Score=24.35 Aligned_cols=9 Identities=56% Similarity=1.125 Sum_probs=7.6
Q ss_pred ccccccchH
Q 042839 57 VGEYGVHWN 65 (207)
Q Consensus 57 vtEYGvHWN 65 (207)
|-.||-|||
T Consensus 16 VK~~G~~WN 24 (49)
T d1x58a1 16 VKTMGNHWN 24 (49)
T ss_dssp HHHHCSCHH
T ss_pred HHHhcchhh
Confidence 557899999
No 2
>d1d0gr1 g.24.1.1 (R:21-61) Death receptor-5 (dr5) fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.09 E-value=7.7 Score=22.25 Aligned_cols=9 Identities=44% Similarity=1.198 Sum_probs=6.4
Q ss_pred ccccchHHH
Q 042839 59 EYGVHWNFF 67 (207)
Q Consensus 59 EYGvHWNFF 67 (207)
.|-.|||=|
T Consensus 29 dysthwnd~ 37 (41)
T d1d0gr1 29 DYSTHWNDL 37 (41)
T ss_dssp EECCSSBCC
T ss_pred cccccccce
Confidence 477899943
No 3
>d1esoa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Escherichia coli [TaxId: 562]}
Probab=11.51 E-value=23 Score=25.81 Aligned_cols=10 Identities=20% Similarity=0.272 Sum_probs=7.6
Q ss_pred cccccccccc
Q 042839 53 YQVHVGEYGV 62 (207)
Q Consensus 53 Y~ehvtEYGv 62 (207)
+.-||.|||.
T Consensus 45 hg~HIHe~Gd 54 (154)
T d1esoa_ 45 HGFHIHAKGS 54 (154)
T ss_dssp ECEEEESSSC
T ss_pred ceEEEcCCCc
Confidence 5578889985
No 4
>d1ep0a_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=7.74 E-value=48 Score=24.44 Aligned_cols=18 Identities=11% Similarity=0.261 Sum_probs=14.2
Q ss_pred hccccccccccccccchH
Q 042839 48 TTGVDYQVHVGEYGVHWN 65 (207)
Q Consensus 48 vk~~~Y~ehvtEYGvHWN 65 (207)
-+..++..+..|.|+|||
T Consensus 131 Y~~s~~y~p~~e~~i~~~ 148 (183)
T d1ep0a_ 131 YKCTELYHPEYDSGIPWD 148 (183)
T ss_dssp EEESSCCCGGGEEECCTT
T ss_pred EeccCCcCccccccccCC
Confidence 345577788899999997
No 5
>d1x68a2 g.39.1.3 (A:37-70) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.45 E-value=50 Score=18.02 Aligned_cols=10 Identities=40% Similarity=0.478 Sum_probs=8.1
Q ss_pred cccccccchh
Q 042839 117 TDIISQNKEG 126 (207)
Q Consensus 117 ~~~lsaNrEG 126 (207)
.||+++|+|=
T Consensus 12 ~gfltq~~~i 21 (34)
T d1x68a2 12 KGFLTQNKEI 21 (34)
T ss_dssp SCEEEETTEE
T ss_pred eeeeeccCcE
Confidence 5899999873
No 6
>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}
Probab=7.23 E-value=23 Score=23.84 Aligned_cols=12 Identities=50% Similarity=0.960 Sum_probs=9.9
Q ss_pred CCcchhHhhhcc
Q 042839 1 MDLGVGSFVFAN 12 (207)
Q Consensus 1 MDlGVGsFVfs~ 12 (207)
|++|+|+.|+..
T Consensus 1 ~~v~agavv~~~ 12 (126)
T d1vcda1 1 MELGAGGVVFNA 12 (126)
T ss_dssp CEEEEEEEEECT
T ss_pred CEEEEEEEEEEC
Confidence 889999988854
No 7
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.43 E-value=36 Score=19.65 Aligned_cols=10 Identities=20% Similarity=0.514 Sum_probs=7.8
Q ss_pred cccccccchH
Q 042839 56 HVGEYGVHWN 65 (207)
Q Consensus 56 hvtEYGvHWN 65 (207)
.+.|||.+|+
T Consensus 15 ~v~~~G~~W~ 24 (47)
T d1gv2a2 15 AHKRLGNRWA 24 (47)
T ss_dssp HHHHHSSCHH
T ss_pred HHHHHhhHHH
Confidence 4568899997
No 8
>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]}
Probab=6.11 E-value=68 Score=23.97 Aligned_cols=13 Identities=31% Similarity=0.634 Sum_probs=6.4
Q ss_pred ccccccccccccc
Q 042839 50 GVDYQVHVGEYGV 62 (207)
Q Consensus 50 ~~~Y~ehvtEYGv 62 (207)
+.||++|.-|.|.
T Consensus 16 g~Ny~~H~~E~~~ 28 (216)
T d1gtta2 16 GLNYADHASELEF 28 (216)
T ss_dssp SSCBCCC------
T ss_pred EccHHHHHHHhCC
Confidence 7899999999874
No 9
>d2apsa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Actinobacillus pleuropneumoniae [TaxId: 715]}
Probab=5.68 E-value=59 Score=23.50 Aligned_cols=10 Identities=10% Similarity=0.079 Sum_probs=6.7
Q ss_pred cccccccccc
Q 042839 53 YQVHVGEYGV 62 (207)
Q Consensus 53 Y~ehvtEYGv 62 (207)
+.-||.|||.
T Consensus 45 hg~HIHe~gd 54 (155)
T d2apsa_ 45 HGFHIHQNPS 54 (155)
T ss_dssp ECEEEESSSC
T ss_pred eeEEEcccCC
Confidence 3457888874
No 10
>d2ixha1 b.82.1.1 (A:1-184) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudomonas aeruginosa [TaxId: 287]}
Probab=5.50 E-value=74 Score=23.43 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=13.9
Q ss_pred ccccccccccccccchH
Q 042839 49 TGVDYQVHVGEYGVHWN 65 (207)
Q Consensus 49 k~~~Y~ehvtEYGvHWN 65 (207)
+..+|..+..|.|++||
T Consensus 135 ~~s~~y~~~~e~~i~~~ 151 (184)
T d2ixha1 135 KTTDFWAPEHERCIVWN 151 (184)
T ss_dssp EESSCCCGGGEEEBCTT
T ss_pred ccccccCcccceeEcCC
Confidence 45577778899999998
Done!