BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042840
(213 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GEZ|B Chain B, Crystal Structure Of Potassium-Independent Plant
Asparaginase
pdb|2GEZ|D Chain D, Crystal Structure Of Potassium-Independent Plant
Asparaginase
pdb|2GEZ|F Chain F, Crystal Structure Of Potassium-Independent Plant
Asparaginase
pdb|2GEZ|H Chain H, Crystal Structure Of Potassium-Independent Plant
Asparaginase
Length = 133
Score = 176 bits (446), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 87/126 (69%), Positives = 100/126 (79%), Gaps = 14/126 (11%)
Query: 99 VAVDNQGNLAAATSTGGMVNKMVGRIGDTPIIGSRTYANKLCAVSATGK----------- 147
VAVD+ GNLA+ATSTGG+VNKMVGRIGDTP+IG+ TYAN+LCAVSATGK
Sbjct: 5 VAVDSHGNLASATSTGGLVNKMVGRIGDTPLIGAGTYANELCAVSATGKGEEIIRATVAR 64
Query: 148 ---ALMEFKGLSLKEASAYVVEECVPRGNVGLIVVSASGEVTMPFNTTGKFRACATEDGY 204
ALMEFKGLSLKEA+ +V+ E P+G VGLI VSA+GE+ MPFNTTG FRACATEDGY
Sbjct: 65 DVAALMEFKGLSLKEAADFVIHERTPKGTVGLIAVSAAGEIAMPFNTTGMFRACATEDGY 124
Query: 205 SQIGRW 210
S+I W
Sbjct: 125 SEIAIW 130
>pdb|2ZAK|A Chain A, Orthorhombic Crystal Structure Of Precursor E. Coli
Isoaspartyl PeptidaseL-Asparaginase (Ecaiii) With
Active-Site T179a Mutation
pdb|2ZAK|B Chain B, Orthorhombic Crystal Structure Of Precursor E. Coli
Isoaspartyl PeptidaseL-Asparaginase (Ecaiii) With
Active-Site T179a Mutation
pdb|3C17|A Chain A, Hexagonal Crystal Structure Of Precursor E. Coli
Isoaspartyl Peptidase/l-asparaginase (ecaiii) With
Active-site T179a Mutation
pdb|3C17|B Chain B, Hexagonal Crystal Structure Of Precursor E. Coli
Isoaspartyl Peptidase/l-asparaginase (ecaiii) With
Active-site T179a Mutation
Length = 320
Score = 153 bits (386), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 128/217 (58%), Gaps = 20/217 (9%)
Query: 1 MEGCIMDGNSKKCGAVSGFTTVINAISLSRLVMEKNPHIYLAFDGAEAFAREQGVETVDS 60
++ C+MDGN+ K GAV+G + + N + +RLVME++PH+ + +GAE FA +G+E V
Sbjct: 81 LDACVMDGNTLKAGAVAGVSHLRNPVLAARLVMEQSPHVMMIGEGAENFAFARGMERVSP 140
Query: 61 SHFITIERLKQAKEAKR---VQIDYSQPIQKDVEKELPAANVAVDNQGNLAAATSTGGMV 117
F T R +Q A++ +D+S + +K VA+D GNLAAATSTGGM
Sbjct: 141 EIFSTSLRYEQLLAARKEGATVLDHSGAPLDEKQKMGAVGAVALDLDGNLAAATSTGGMT 200
Query: 118 NKMVGRIGDTPIIGSRTYANKL-CAVSATGK--------------ALMEFKGLSLKEASA 162
NK+ GR+GD+P++G+ YAN AVS TG ALM++ GLSL EA
Sbjct: 201 NKLPGRVGDSPLVGAGCYANNASVAVSCTGTGEVFIRALAAYDIAALMDYGGLSLAEACE 260
Query: 163 YVVEECVPR--GNVGLIVVSASGEVTMPFNTTGKFRA 197
VV E +P G+ GLI + G V +PFNT G +RA
Sbjct: 261 RVVMEKLPALGGSGGLIAIDHEGNVALPFNTEGMYRA 297
>pdb|2GEZ|A Chain A, Crystal Structure Of Potassium-Independent Plant
Asparaginase
pdb|2GEZ|C Chain C, Crystal Structure Of Potassium-Independent Plant
Asparaginase
pdb|2GEZ|E Chain E, Crystal Structure Of Potassium-Independent Plant
Asparaginase
pdb|2GEZ|G Chain G, Crystal Structure Of Potassium-Independent Plant
Asparaginase
Length = 195
Score = 143 bits (360), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 70/106 (66%), Positives = 82/106 (77%), Gaps = 8/106 (7%)
Query: 1 MEGCIMDGNSKKCGAVSGFTTVINAISLSRLVMEKNPHIYLAFDGAEAFAREQGVETVDS 60
ME IMDGN+ KCGAVSG +TV+N ISL+RLVM+K PHIYLAF GA+ FA++QGVETVDS
Sbjct: 84 MEASIMDGNTMKCGAVSGLSTVLNPISLARLVMDKTPHIYLAFQGAQDFAKQQGVETVDS 143
Query: 61 SHFIT---IERLKQAKEAKRVQIDYSQ-----PIQKDVEKELPAAN 98
SH IT +ERLK A EA RVQ+DYSQ P++ D EKELP N
Sbjct: 144 SHLITAENVERLKLAIEANRVQVDYSQYNYPEPVKDDAEKELPLTN 189
>pdb|3TKJ|A Chain A, Crystal Structure Of Human Asparaginase-Like Protein 1
Thr168ala
pdb|3TKJ|B Chain B, Crystal Structure Of Human Asparaginase-Like Protein 1
Thr168ala
Length = 319
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 118/228 (51%), Gaps = 28/228 (12%)
Query: 1 MEGCIMDGNSKKCGAVSGFTTVINAISLSRLVMEKNPHIYLAFDGAEAFAREQGVETVDS 60
M+ IMDG GAVS + N I L+RLVMEK PH +L GA FA GV +
Sbjct: 88 MDASIMDGKDLSAGAVSAVQCIANPIKLARLVMEKTPHCFLTDQGAAQFAAAMGVPEIPG 147
Query: 61 SHFIT---IERLKQAKEAKRVQIDYSQPIQKDVEKELPAAN-VAVDNQGNLAAATSTGGM 116
+T +RL++ K K Q + D +K L A VA+D +GN+A ATSTGG+
Sbjct: 148 EKLVTERNKKRLEKEKHEKGAQ-------KTDCQKNLGAVGAVALDCKGNVAYATSTGGI 200
Query: 117 VNKMVGRIGDTPIIGSRTYA-NKLCAVSATGKA----------LMEF---KGLSLKEASA 162
VNKMVGR+GD+P +G+ YA N + AVS TG L F +G +++EA+
Sbjct: 201 VNKMVGRVGDSPCLGAGGYADNDIGAVSTTGHGESILKVNLARLTLFHIEQGKTVEEAAD 260
Query: 163 YVVEECVPR--GNVGLIVVSASGEVTMPFNTTGKFRACATEDGYSQIG 208
+ R G GLIVVS +G+ + +T A +DG G
Sbjct: 261 LSLGYMKSRVKGLGGLIVVSKTGDWVAKWTST-SMPWAAAKDGKLHFG 307
>pdb|4ET0|A Chain A, Crystal Structure Of Circularly Permuted Human
Asparaginase-Like Protein 1
pdb|4ET0|B Chain B, Crystal Structure Of Circularly Permuted Human
Asparaginase-Like Protein 1
Length = 327
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 116/228 (50%), Gaps = 21/228 (9%)
Query: 1 MEGCIMDGNSKKCGAVSGFTTVINAISLSRLVMEKNPHIYLAFDGAEAFAREQGVETVDS 60
M+ IMDG GAVS + N I L+RLVMEK PH +L GA FA GV +
Sbjct: 77 MDASIMDGKDLSAGAVSAVQCIANPIKLARLVMEKTPHCFLTDQGAAQFAAAMGVPEIPG 136
Query: 61 SHFIT---IERLKQAKEAKRVQ-IDYSQPIQKDVEKELPAANVAVDNQGNLAAATSTGGM 116
+T +RL++ K K Q D + + + VA+D +GN+A ATSTGG+
Sbjct: 137 EKLVTERNKKRLEKEKHEKGAQKTDCQKNLGHHHHHHMTVGAVALDCKGNVAYATSTGGI 196
Query: 117 VNKMVGRIGDTPIIGSRTYA-NKLCAVSATGKA----------LMEF---KGLSLKEASA 162
VNKMVGR+GD+P +G+ YA N + AVS TG L F +G +++EA+
Sbjct: 197 VNKMVGRVGDSPCLGAGGYADNDIGAVSTTGHGESILKVNLARLTLFHIEQGKTVEEAAD 256
Query: 163 YVVEECVPR--GNVGLIVVSASGEVTMPFNTTGKFRACATEDGYSQIG 208
+ R G GLIVVS +G+ + +T A +DG G
Sbjct: 257 LSLGYMKSRVKGLGGLIVVSKTGDWVAKWTST-SMPWAAAKDGKLHFG 303
>pdb|4GDT|A Chain A, Crystal Structure Of Malonate-Bound Human L-Asparaginase
Protein
pdb|4GDT|B Chain B, Crystal Structure Of Malonate-Bound Human L-Asparaginase
Protein
pdb|4GDU|A Chain A, Crystal Structure Of Sulfate-Bound Human L-Asparaginase
Protein
pdb|4GDU|B Chain B, Crystal Structure Of Sulfate-Bound Human L-Asparaginase
Protein
pdb|4GDV|A Chain A, Crystal Structure Of Partially-Cleaved Human
L-Asparaginase Protein In Complex With L-Aspartate
pdb|4GDV|B Chain B, Crystal Structure Of Partially-Cleaved Human
L-Asparaginase Protein In Complex With L-Aspartate
pdb|4GDW|A Chain A, Crystal Structure Of Fully-Cleaved Human L-Asparaginase
Protein In Complex With L-Aspartate
pdb|4GDW|B Chain B, Crystal Structure Of Fully-Cleaved Human L-Asparaginase
Protein In Complex With L-Aspartate
Length = 310
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/228 (37%), Positives = 117/228 (51%), Gaps = 28/228 (12%)
Query: 1 MEGCIMDGNSKKCGAVSGFTTVINAISLSRLVMEKNPHIYLAFDGAEAFAREQGVETVDS 60
M+ IMDG GAVS + N I L+RLVMEK PH +L GA FA GV +
Sbjct: 79 MDASIMDGKDLSAGAVSAVQCIANPIKLARLVMEKTPHCFLTDQGAAQFAAAMGVPEIPG 138
Query: 61 SHFIT---IERLKQAKEAKRVQIDYSQPIQKDVEKELPAAN-VAVDNQGNLAAATSTGGM 116
+T +RL++ K K Q + D +K L VA+D +GN+A ATSTGG+
Sbjct: 139 EKLVTERNKKRLEKEKHEKGAQ-------KTDCQKNLGTVGAVALDCKGNVAYATSTGGI 191
Query: 117 VNKMVGRIGDTPIIGSRTYA-NKLCAVSATGKA----------LMEF---KGLSLKEASA 162
VNKMVGR+GD+P +G+ YA N + AVS TG L F +G +++EA+
Sbjct: 192 VNKMVGRVGDSPCLGAGGYADNDIGAVSTTGHGESILKVNLARLTLFHIEQGKTVEEAAD 251
Query: 163 YVVEECVPR--GNVGLIVVSASGEVTMPFNTTGKFRACATEDGYSQIG 208
+ R G GLIVVS +G+ + +T A +DG G
Sbjct: 252 LSLGYMKSRVKGLGGLIVVSKTGDWVAKWTST-SMPWAAAKDGKLHFG 298
>pdb|1T3M|B Chain B, Structure Of The Isoaspartyl Peptidase With L-Asparaginase
Activity From E. Coli
pdb|1T3M|D Chain D, Structure Of The Isoaspartyl Peptidase With L-Asparaginase
Activity From E. Coli
Length = 147
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 71/116 (61%), Gaps = 17/116 (14%)
Query: 99 VAVDNQGNLAAATSTGGMVNKMVGRIGDTPIIGSRTYANKL-CAVSATGK---------- 147
VA+D GNLAAATSTGGM NK+ GR+GD+P++G+ YAN AVS TG
Sbjct: 5 VALDLDGNLAAATSTGGMTNKLPGRVGDSPLVGAGCYANNASVAVSCTGTGEVFIRALAA 64
Query: 148 ----ALMEFKGLSLKEASAYVVEECVPR--GNVGLIVVSASGEVTMPFNTTGKFRA 197
ALM++ GLSL EA VV E +P G+ GLI + G V +PFNT G +RA
Sbjct: 65 YDIAALMDYGGLSLAEACERVVMEKLPALGGSGGLIAIDHEGNVALPFNTEGMYRA 120
>pdb|1JN9|B Chain B, Structure Of Putative Asparaginase Encoded By Escherichia
Coli Ybik Gene
pdb|1JN9|D Chain D, Structure Of Putative Asparaginase Encoded By Escherichia
Coli Ybik Gene
pdb|1K2X|B Chain B, Crystal Structure Of Putative Asparaginase Encoded By
Escherichia Coli Ybik Gene
pdb|1K2X|D Chain D, Crystal Structure Of Putative Asparaginase Encoded By
Escherichia Coli Ybik Gene
Length = 143
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 71/116 (61%), Gaps = 17/116 (14%)
Query: 99 VAVDNQGNLAAATSTGGMVNKMVGRIGDTPIIGSRTYANKL-CAVSATGK---------- 147
VA+D GNLAAATSTGGM NK+ GR+GD+P++G+ YAN AVS TG
Sbjct: 5 VALDLDGNLAAATSTGGMTNKLPGRVGDSPLVGAGCYANNASVAVSCTGTGEVFIRALAA 64
Query: 148 ----ALMEFKGLSLKEASAYVVEECVPR--GNVGLIVVSASGEVTMPFNTTGKFRA 197
ALM++ GLSL EA VV E +P G+ GLI + G V +PFNT G +RA
Sbjct: 65 YDIAALMDYGGLSLAEACERVVMEKLPALGGSGGLIAIDHEGNVALPFNTEGMYRA 120
>pdb|2ZAL|B Chain B, Crystal Structure Of E. Coli Isoaspartyl
AminopeptidaseL-Asparaginase In Complex With L-Aspartate
pdb|2ZAL|D Chain D, Crystal Structure Of E. Coli Isoaspartyl
AminopeptidaseL-Asparaginase In Complex With L-Aspartate
Length = 137
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 71/116 (61%), Gaps = 17/116 (14%)
Query: 99 VAVDNQGNLAAATSTGGMVNKMVGRIGDTPIIGSRTYANKL-CAVSATGK---------- 147
VA+D GNLAAATSTGGM NK+ GR+GD+P++G+ YAN AVS TG
Sbjct: 5 VALDLDGNLAAATSTGGMTNKLPGRVGDSPLVGAGCYANNASVAVSCTGTGEVFIRALAA 64
Query: 148 ----ALMEFKGLSLKEASAYVVEECVPR--GNVGLIVVSASGEVTMPFNTTGKFRA 197
ALM++ GLSL EA VV E +P G+ GLI + G V +PFNT G +RA
Sbjct: 65 YDIAALMDYGGLSLAEACERVVMEKLPALGGSGGLIAIDHEGNVALPFNTEGMYRA 120
>pdb|9GAA|A Chain A, Precursor Of The T152a Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAA|C Chain C, Precursor Of The T152a Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 86/147 (58%), Gaps = 8/147 (5%)
Query: 1 MEGCIMDGNSKKCGAVSGFTTVINAISLSRLVMEKNPHIYLAFDGAEAFAREQGVETVDS 60
++ CIMD N G+V+ + N IS++R VMEK PH+ L DGA FA QG +
Sbjct: 65 LDACIMDENYN-IGSVACMEHIKNPISVARAVMEKTPHVMLVGDGALEFALSQGFK---K 120
Query: 61 SHFITIERLKQAKEAKRVQIDYSQPIQKDVEKELPAANVAVDNQGNLAAATSTGGMVNKM 120
+ +T E K+ KE ++ +PI ++E +A+D QGNL+ A +T GM KM
Sbjct: 121 ENLLTAESEKEWKEW--LKTSQYKPIV-NIENHDAIGMIALDAQGNLSGACTTSGMAYKM 177
Query: 121 VGRIGDTPIIGSRTYA-NKLCAVSATG 146
GR+GD+PIIG+ + N++ A +ATG
Sbjct: 178 HGRVGDSPIIGAGLFVDNEIGAATATG 204
>pdb|1P4K|A Chain A, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant
pdb|1P4K|C Chain C, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant
pdb|1P4V|A Chain A, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant With Glycine
pdb|1P4V|C Chain C, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant With Glycine
Length = 295
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 86/147 (58%), Gaps = 8/147 (5%)
Query: 1 MEGCIMDGNSKKCGAVSGFTTVINAISLSRLVMEKNPHIYLAFDGAEAFAREQGVETVDS 60
++ CIMD N G+V+ + N IS++R VMEK PH+ L DGA FA QG +
Sbjct: 65 LDACIMDENYN-IGSVACMEHIKNPISVARAVMEKTPHVMLVGDGALEFALSQGFK---K 120
Query: 61 SHFITIERLKQAKEAKRVQIDYSQPIQKDVEKELPAANVAVDNQGNLAAATSTGGMVNKM 120
+ +T E K+ KE ++ +PI ++E +A+D QGNL+ A +T GM KM
Sbjct: 121 ENLLTAESEKEWKEW--LKTSQYKPIV-NIENHNTIGMIALDAQGNLSGACTTSGMAYKM 177
Query: 121 VGRIGDTPIIGSRTYA-NKLCAVSATG 146
GR+GD+PIIG+ + N++ A +ATG
Sbjct: 178 HGRVGDSPIIGAGLFVDNEIGAATATG 204
>pdb|9GAF|A Chain A, Precursor Of The W11f Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAF|C Chain C, Precursor Of The W11f Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 86/147 (58%), Gaps = 8/147 (5%)
Query: 1 MEGCIMDGNSKKCGAVSGFTTVINAISLSRLVMEKNPHIYLAFDGAEAFAREQGVETVDS 60
++ CIMD N G+V+ + N IS++R VMEK PH+ L DGA FA QG +
Sbjct: 65 LDACIMDENYN-IGSVACMEHIKNPISVARAVMEKTPHVMLVGDGALEFALSQGFK---K 120
Query: 61 SHFITIERLKQAKEAKRVQIDYSQPIQKDVEKELPAANVAVDNQGNLAAATSTGGMVNKM 120
+ +T E K+ KE ++ +PI ++E +A+D QGNL+ A +T GM KM
Sbjct: 121 ENLLTAESEKEWKEW--LKTSQYKPIV-NIENHDTIGMIALDAQGNLSGACTTSGMAYKM 177
Query: 121 VGRIGDTPIIGSRTYA-NKLCAVSATG 146
GR+GD+PIIG+ + N++ A +ATG
Sbjct: 178 HGRVGDSPIIGAGLFVDNEIGAATATG 204
>pdb|9GAC|A Chain A, Precursor Of The T152c Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAC|C Chain C, Precursor Of The T152c Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 86/147 (58%), Gaps = 8/147 (5%)
Query: 1 MEGCIMDGNSKKCGAVSGFTTVINAISLSRLVMEKNPHIYLAFDGAEAFAREQGVETVDS 60
++ CIMD N G+V+ + N IS++R VMEK PH+ L DGA FA QG +
Sbjct: 65 LDACIMDENYN-IGSVACMEHIKNPISVARAVMEKTPHVMLVGDGALEFALSQGFK---K 120
Query: 61 SHFITIERLKQAKEAKRVQIDYSQPIQKDVEKELPAANVAVDNQGNLAAATSTGGMVNKM 120
+ +T E K+ KE ++ +PI ++E +A+D QGNL+ A +T GM KM
Sbjct: 121 ENLLTAESEKEWKEW--LKTSQYKPIV-NIENHDCIGMIALDAQGNLSGACTTSGMAYKM 177
Query: 121 VGRIGDTPIIGSRTYA-NKLCAVSATG 146
GR+GD+PIIG+ + N++ A +ATG
Sbjct: 178 HGRVGDSPIIGAGLFVDNEIGAATATG 204
>pdb|3LJQ|A Chain A, Crystal Structure Of The Glycosylasparaginase T152c
Apo-Precursor
pdb|3LJQ|C Chain C, Crystal Structure Of The Glycosylasparaginase T152c
Apo-Precursor
Length = 299
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 86/147 (58%), Gaps = 8/147 (5%)
Query: 1 MEGCIMDGNSKKCGAVSGFTTVINAISLSRLVMEKNPHIYLAFDGAEAFAREQGVETVDS 60
++ CIMD N G+V+ + N IS++R VMEK PH+ L DGA FA QG +
Sbjct: 69 LDACIMDENYN-IGSVACMEHIKNPISVARAVMEKTPHVMLVGDGALEFALSQGFK---K 124
Query: 61 SHFITIERLKQAKEAKRVQIDYSQPIQKDVEKELPAANVAVDNQGNLAAATSTGGMVNKM 120
+ +T E K+ KE ++ +PI ++E +A+D QGNL+ A +T GM KM
Sbjct: 125 ENLLTAESEKEWKEW--LKTSQYKPIV-NIENHDCIGMIALDAQGNLSGACTTSGMAYKM 181
Query: 121 VGRIGDTPIIGSRTYA-NKLCAVSATG 146
GR+GD+PIIG+ + N++ A +ATG
Sbjct: 182 HGRVGDSPIIGAGLFVDNEIGAATATG 208
>pdb|1JN9|A Chain A, Structure Of Putative Asparaginase Encoded By Escherichia
Coli Ybik Gene
pdb|1JN9|C Chain C, Structure Of Putative Asparaginase Encoded By Escherichia
Coli Ybik Gene
pdb|1K2X|A Chain A, Crystal Structure Of Putative Asparaginase Encoded By
Escherichia Coli Ybik Gene
pdb|1K2X|C Chain C, Crystal Structure Of Putative Asparaginase Encoded By
Escherichia Coli Ybik Gene
Length = 177
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 50/77 (64%)
Query: 1 MEGCIMDGNSKKCGAVSGFTTVINAISLSRLVMEKNPHIYLAFDGAEAFAREQGVETVDS 60
++ C+MDGN+ K GAV+G + + N + +RLVME++PH+ + +GAE FA +G+E V
Sbjct: 81 LDACVMDGNTLKAGAVAGVSHLRNPVLAARLVMEQSPHVMMIGEGAENFAFARGMERVSP 140
Query: 61 SHFITIERLKQAKEAKR 77
F T R +Q A++
Sbjct: 141 EIFSTSLRYEQLLAARK 157
>pdb|2ZAL|C Chain C, Crystal Structure Of E. Coli Isoaspartyl
AminopeptidaseL-Asparaginase In Complex With L-Aspartate
pdb|2ZAL|A Chain A, Crystal Structure Of E. Coli Isoaspartyl
AminopeptidaseL-Asparaginase In Complex With L-Aspartate
Length = 160
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 50/77 (64%)
Query: 1 MEGCIMDGNSKKCGAVSGFTTVINAISLSRLVMEKNPHIYLAFDGAEAFAREQGVETVDS 60
++ C+MDGN+ K GAV+G + + N + +RLVME++PH+ + +GAE FA +G+E V
Sbjct: 81 LDACVMDGNTLKAGAVAGVSHLRNPVLAARLVMEQSPHVMMIGEGAENFAFARGMERVSP 140
Query: 61 SHFITIERLKQAKEAKR 77
F T R +Q A++
Sbjct: 141 EIFSTSLRYEQLLAARK 157
>pdb|1T3M|A Chain A, Structure Of The Isoaspartyl Peptidase With L-Asparaginase
Activity From E. Coli
pdb|1T3M|C Chain C, Structure Of The Isoaspartyl Peptidase With L-Asparaginase
Activity From E. Coli
Length = 177
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 50/77 (64%)
Query: 1 MEGCIMDGNSKKCGAVSGFTTVINAISLSRLVMEKNPHIYLAFDGAEAFAREQGVETVDS 60
++ C+MDGN+ K GAV+G + + N + +RLVME++PH+ + +GAE FA +G+E V
Sbjct: 81 LDACVMDGNTLKAGAVAGVSHLRNPVLAARLVMEQSPHVMMIGEGAENFAFARGMERVSP 140
Query: 61 SHFITIERLKQAKEAKR 77
F T R +Q A++
Sbjct: 141 EIFSTSLRYEQLLAARK 157
>pdb|2A8L|A Chain A, Crystal Structure Of Human Taspase1 (T234a Mutant)
pdb|2A8L|B Chain B, Crystal Structure Of Human Taspase1 (T234a Mutant)
Length = 420
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 77/157 (49%), Gaps = 25/157 (15%)
Query: 5 IMDGNSKKCGAVSGFTTVINAISLS-RLVME---------KNPHIYLAFDGAEAFAREQG 54
IMDG S GAV + + N +S++ RL+ E + P +L +GA +A + G
Sbjct: 119 IMDGKSLNFGAVGALSGIKNPVSVANRLLCEGQKGKLSAGRIPPCFLVGEGAYRWAVDHG 178
Query: 55 VETVDSSHFIT------IERLKQAKE-AKRVQIDYSQ--PIQKDVEKELPAAN------V 99
+ + + T +R K+ E A+RV D+ Q ++ EKE + V
Sbjct: 179 IPSCPPNIMTTRFSLAAFKRNKRKLELAERVDTDFMQLKKRRQSSEKENDSGTLDAVGAV 238
Query: 100 AVDNQGNLAAATSTGGMVNKMVGRIGDTPIIGSRTYA 136
VD++GN+AAA S+GG+ K GR+G + G +A
Sbjct: 239 VVDHEGNVAAAVSSGGLALKHPGRVGQAALYGCGCWA 275
>pdb|2A8M|A Chain A, Crystal Structure Of Human Taspase1 (T234s Mutant)
pdb|2A8M|B Chain B, Crystal Structure Of Human Taspase1 (T234s Mutant)
Length = 420
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 77/157 (49%), Gaps = 25/157 (15%)
Query: 5 IMDGNSKKCGAVSGFTTVINAISLS-RLVME---------KNPHIYLAFDGAEAFAREQG 54
IMDG S GAV + + N +S++ RL+ E + P +L +GA +A + G
Sbjct: 119 IMDGKSLNFGAVGALSGIKNPVSVANRLLCEGQKGKLSAGRIPPCFLVGEGAYRWAVDHG 178
Query: 55 VETVDSSHFIT------IERLKQAKE-AKRVQIDYSQ--PIQKDVEKELPAAN------V 99
+ + + T +R K+ E A+RV D+ Q ++ EKE + V
Sbjct: 179 IPSCPPNIMTTRFSLAAFKRNKRKLELAERVDTDFMQLKKRRQSSEKENDSGTLDSVGAV 238
Query: 100 AVDNQGNLAAATSTGGMVNKMVGRIGDTPIIGSRTYA 136
VD++GN+AAA S+GG+ K GR+G + G +A
Sbjct: 239 VVDHEGNVAAAVSSGGLALKHPGRVGQAALYGCGCWA 275
>pdb|2A8J|A Chain A, Crystal Structure Of Human Taspase1 (Acivated Form)
pdb|2A8J|B Chain B, Crystal Structure Of Human Taspase1 (Acivated Form)
Length = 420
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 77/157 (49%), Gaps = 25/157 (15%)
Query: 5 IMDGNSKKCGAVSGFTTVINAISLS-RLVME---------KNPHIYLAFDGAEAFAREQG 54
IMDG S GAV + + N +S++ RL+ E + P +L +GA +A + G
Sbjct: 119 IMDGKSLNFGAVGALSGIKNPVSVANRLLCEGQKGKLSAGRIPPCFLVGEGAYRWAVDHG 178
Query: 55 VETVDSSHFIT------IERLKQAKE-AKRVQIDYSQ--PIQKDVEKELPAAN------V 99
+ + + T +R K+ E A+RV D+ Q ++ EKE + V
Sbjct: 179 IPSCPPNIMTTRFSLAAFKRNKRKLELAERVDTDFMQLKKRRQSSEKENDSGTLDTVGAV 238
Query: 100 AVDNQGNLAAATSTGGMVNKMVGRIGDTPIIGSRTYA 136
VD++GN+AAA S+GG+ K GR+G + G +A
Sbjct: 239 VVDHEGNVAAAVSSGGLALKHPGRVGQAALYGCGCWA 275
>pdb|2A8I|A Chain A, Crystal Structure Of Human Taspase1
pdb|2A8I|B Chain B, Crystal Structure Of Human Taspase1
Length = 420
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 25/157 (15%)
Query: 5 IMDGNSKKCGAVSGFTTVINAISLS-RLVME---------KNPHIYLAFDGAEAFAREQG 54
I DG S GAV + + N +S++ RL+ E + P +L +GA +A + G
Sbjct: 119 IXDGKSLNFGAVGALSGIKNPVSVANRLLCEGQKGKLSAGRIPPCFLVGEGAYRWAVDHG 178
Query: 55 VET----VDSSHF--ITIERLKQAKE-AKRVQIDYSQ--PIQKDVEKELPAAN------V 99
+ + + ++ F +R K+ E A+RV D+ Q ++ EKE + V
Sbjct: 179 IPSCPPNIXTTRFSLAAFKRNKRKLELAERVDTDFXQLKKRRQSSEKENDSGTLDTVGAV 238
Query: 100 AVDNQGNLAAATSTGGMVNKMVGRIGDTPIIGSRTYA 136
VD++GN+AAA S+GG+ K GR+G + G +A
Sbjct: 239 VVDHEGNVAAAVSSGGLALKHPGRVGQAALYGCGCWA 275
>pdb|1AYY|A Chain A, Glycosylasparaginase
pdb|1AYY|C Chain C, Glycosylasparaginase
pdb|2GAC|A Chain A, T152c Mutant Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GAC|C Chain C, T152c Mutant Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GAW|A Chain A, Wild Type Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GAW|C Chain C, Wild Type Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GL9|A Chain A, Crystal Structure Of Glycosylasparaginase-Substrate
Complex
pdb|2GL9|C Chain C, Crystal Structure Of Glycosylasparaginase-Substrate
Complex
Length = 151
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 1 MEGCIMDGNSKKCGAVSGFTTVINAISLSRLVMEKNPHIYLAFDGAEAFAREQGVETVDS 60
++ CIMD N G+V+ + N IS++R VMEK PH+ L DGA FA QG +
Sbjct: 65 LDACIMDENYN-IGSVACMEHIKNPISVARAVMEKTPHVMLVGDGALEFALSQGFK---K 120
Query: 61 SHFITIERLKQAKE 74
+ +T E K+ KE
Sbjct: 121 ENLLTAESEKEWKE 134
>pdb|1AYY|B Chain B, Glycosylasparaginase
pdb|1AYY|D Chain D, Glycosylasparaginase
pdb|2GAW|B Chain B, Wild Type Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GAW|D Chain D, Wild Type Glycosylasparaginase From Flavobacterium
Meningosepticum
Length = 144
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
Query: 99 VAVDNQGNLAAATSTGGMVNKMVGRIGDTPIIGSRTYA-NKLCAVSATG 146
+A+D QGNL+ A +T GM KM GR+GD+PIIG+ + N++ A +ATG
Sbjct: 5 IALDAQGNLSGACTTSGMAYKMHGRVGDSPIIGAGLFVDNEIGAATATG 53
>pdb|2GAC|B Chain B, T152c Mutant Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GAC|D Chain D, T152c Mutant Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GL9|B Chain B, Crystal Structure Of Glycosylasparaginase-Substrate
Complex
pdb|2GL9|D Chain D, Crystal Structure Of Glycosylasparaginase-Substrate
Complex
Length = 144
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 99 VAVDNQGNLAAATSTGGMVNKMVGRIGDTPIIGSRTYA-NKLCAVSATGKA 148
+A+D QGNL+ A +T GM KM GR+GD+PIIG+ + N++ A +ATG
Sbjct: 5 IALDAQGNLSGACTTSGMAYKMHGRVGDSPIIGAGLFVDNEIGAATATGHG 55
>pdb|1APY|A Chain A, Human Aspartylglucosaminidase
pdb|1APY|C Chain C, Human Aspartylglucosaminidase
pdb|1APZ|A Chain A, Human Aspartylglucosaminidase Complex With Reaction
Product
pdb|1APZ|C Chain C, Human Aspartylglucosaminidase Complex With Reaction
Product
Length = 162
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 1 MEGCIMDGNSKKCGAVSGFTTVINAISLSRLVMEKNPHIYLAFDGAEAFAREQGVETVDS 60
++ IMDG + GAV + NAI ++R V+E H L + A FA+ G D
Sbjct: 64 LDAMIMDGTTMDVGAVGDLRRIKNAIGVARKVLEHTTHTLLVGESATTFAQSMGFINEDL 123
Query: 61 SHFITIERLKQAKEAKRVQIDYSQPIQKDVEK 92
S + + L A+ Q +Y + + D K
Sbjct: 124 STSAS-QALHSDWLARNCQPNYWRNVIPDPSK 154
>pdb|1APY|B Chain B, Human Aspartylglucosaminidase
pdb|1APY|D Chain D, Human Aspartylglucosaminidase
pdb|1APZ|B Chain B, Human Aspartylglucosaminidase Complex With Reaction
Product
pdb|1APZ|D Chain D, Human Aspartylglucosaminidase Complex With Reaction
Product
Length = 141
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 99 VAVDNQGNLAAATSTGGMVNKMVGRIGDTPIIGSRTY 135
V + G++AA TST G+ K+ GR+GD+PI G+ Y
Sbjct: 5 VVIHKTGHIAAGTSTNGIKFKIHGRVGDSPIPGAGAY 41
>pdb|1ZRT|C Chain C, Rhodobacter Capsulatus Cytochrome Bc1 Complex With
Stigmatellin Bound
pdb|1ZRT|P Chain P, Rhodobacter Capsulatus Cytochrome Bc1 Complex With
Stigmatellin Bound
Length = 437
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 13 CGAVSGFTTVINAISLSRLVMEKNPHIYLAFDGAEAFARE 52
G V FT V+ ++ L M PH+ LAF E R+
Sbjct: 47 WGIVLAFTLVLQIVTGIVLAMHYTPHVDLAFASVEHIMRD 86
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From
Saccharomyces Cerevisiae
Length = 296
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 87 QKDVEKELPAANVAVDNQGNLAAATSTGGMVNKMVGRIGDTPIIG 131
QK++ K++PA N+ V G S GG+ +G D IG
Sbjct: 245 QKELLKQIPAENLPVKFGGKSEVDESKGGLYLSDIGPWRDPKYIG 289
>pdb|3KAO|A Chain A, Crystal Structure Of Tagatose 1,6-Diphosphate Aldolase
From Staphylococcus Aureus
Length = 329
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 42/111 (37%), Gaps = 16/111 (14%)
Query: 41 LAFDGAEAFAREQGVETVDSSHFITIERLKQAKEAKRVQIDYSQPIQKDVEKELPAANVA 100
LAFD A R + IE+LK + Q Y+ I D E LPA++
Sbjct: 27 LAFDQRGALKRXXAKHQTEEPTVAQIEQLKVLVAEELTQ--YASSILLDPEYGLPASDAR 84
Query: 101 VDNQGNLAAATSTGGMVNKMVGRIGDTPIIGSRTYANKLCAVSATGKALME 151
+ G L A TG VN GR+ D C V + K L E
Sbjct: 85 NKDCGLLLAYEKTGYDVNAK-GRLPD-------------CLVEWSAKRLKE 121
>pdb|3MYP|A Chain A, Crystal Structure Of Tagatose-1,6-Bisphosphate Aldolase
From Staphylococcus Aureus
pdb|3MYP|B Chain B, Crystal Structure Of Tagatose-1,6-Bisphosphate Aldolase
From Staphylococcus Aureus
pdb|3MYP|C Chain C, Crystal Structure Of Tagatose-1,6-Bisphosphate Aldolase
From Staphylococcus Aureus
pdb|3MYP|D Chain D, Crystal Structure Of Tagatose-1,6-Bisphosphate Aldolase
From Staphylococcus Aureus
Length = 334
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 42/111 (37%), Gaps = 16/111 (14%)
Query: 41 LAFDGAEAFAREQGVETVDSSHFITIERLKQAKEAKRVQIDYSQPIQKDVEKELPAANVA 100
LAFD A R + IE+LK + Q Y+ I D E LPA++
Sbjct: 24 LAFDQRGALKRXXAKHQTEEPTVAQIEQLKVLVAEELTQ--YASSILLDPEYGLPASDAR 81
Query: 101 VDNQGNLAAATSTGGMVNKMVGRIGDTPIIGSRTYANKLCAVSATGKALME 151
+ G L A TG VN GR+ D C V + K L E
Sbjct: 82 NKDCGLLLAYEKTGYDVNAK-GRLPD-------------CLVEWSAKRLKE 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,995,965
Number of Sequences: 62578
Number of extensions: 227986
Number of successful extensions: 569
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 511
Number of HSP's gapped (non-prelim): 32
length of query: 213
length of database: 14,973,337
effective HSP length: 95
effective length of query: 118
effective length of database: 9,028,427
effective search space: 1065354386
effective search space used: 1065354386
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)