Query 042840
Match_columns 213
No_of_seqs 141 out of 985
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 10:05:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042840.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042840hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02689 Bifunctional isoaspar 100.0 9.3E-68 2E-72 473.1 24.2 211 1-211 81-318 (318)
2 PRK10226 isoaspartyl peptidase 100.0 7.1E-66 1.5E-70 460.1 24.4 211 1-212 82-313 (313)
3 COG1446 Asparaginase [Amino ac 100.0 1.2E-60 2.6E-65 420.1 17.8 208 1-210 77-307 (307)
4 cd04513 Glycosylasparaginase G 100.0 6E-60 1.3E-64 412.8 21.9 183 1-197 59-261 (263)
5 PLN02937 Putative isoaspartyl 100.0 3.9E-59 8.5E-64 429.6 23.3 211 1-211 86-389 (414)
6 PF01112 Asparaginase_2: Aspar 100.0 4.2E-59 9.1E-64 418.4 18.6 205 1-205 80-308 (319)
7 cd04702 ASRGL1_like ASRGL1_lik 100.0 4E-58 8.7E-63 399.9 21.2 170 1-210 75-261 (261)
8 KOG1592 Asparaginase [Amino ac 100.0 1E-58 2.3E-63 407.3 16.8 212 1-212 77-324 (326)
9 cd04701 Asparaginase_2 L-Aspar 100.0 8.9E-58 1.9E-62 398.5 20.5 165 1-202 78-259 (260)
10 cd04512 Ntn_Asparaginase_2_lik 100.0 2.3E-56 5E-61 387.2 19.4 161 1-199 72-248 (248)
11 cd04703 Asparaginase_2_like A 100.0 2.2E-56 4.7E-61 386.7 17.9 164 1-199 68-246 (246)
12 cd04514 Taspase1_like Taspase1 100.0 1E-54 2.2E-59 386.7 20.1 170 1-208 74-284 (303)
13 KOG1593 Asparaginase [Amino ac 100.0 1.4E-44 3E-49 313.1 12.9 199 1-200 87-331 (349)
14 PF06267 DUF1028: Family of un 83.9 6.7 0.00015 33.3 7.9 84 96-192 2-98 (190)
15 TIGR00315 cdhB CO dehydrogenas 66.9 8.2 0.00018 31.9 3.8 36 23-58 15-59 (162)
16 PF00205 TPP_enzyme_M: Thiamin 54.6 14 0.0003 28.5 3.0 31 27-57 3-42 (137)
17 PLN02689 Bifunctional isoaspar 52.4 13 0.00028 34.0 2.8 27 94-120 279-305 (318)
18 cd04702 ASRGL1_like ASRGL1_lik 48.9 18 0.00039 32.2 3.1 27 93-119 223-249 (261)
19 PF06739 SBBP: Beta-propeller 48.9 33 0.0007 21.2 3.5 24 93-116 12-35 (38)
20 COG1446 Asparaginase [Amino ac 45.0 23 0.00051 32.2 3.3 29 171-199 174-202 (307)
21 PRK00945 acetyl-CoA decarbonyl 44.3 23 0.0005 29.5 2.9 37 22-58 21-67 (171)
22 PF01112 Asparaginase_2: Aspar 43.7 22 0.00048 32.4 3.0 34 94-127 275-308 (319)
23 cd04513 Glycosylasparaginase G 42.5 49 0.0011 29.5 4.9 29 170-198 136-164 (263)
24 COG1504 Uncharacterized conser 41.1 66 0.0014 25.3 4.8 47 27-76 52-108 (121)
25 PRK10226 isoaspartyl peptidase 41.0 28 0.0006 31.8 3.2 27 93-119 272-298 (313)
26 cd04512 Ntn_Asparaginase_2_lik 39.2 34 0.00073 30.2 3.3 26 93-118 220-245 (248)
27 cd04701 Asparaginase_2 L-Aspar 37.8 32 0.0007 30.6 3.0 27 93-119 228-254 (260)
28 PF01019 G_glu_transpept: Gamm 37.4 32 0.0007 33.1 3.2 28 91-118 323-350 (510)
29 KOG2410 Gamma-glutamyltransfer 34.8 1.1E+02 0.0024 30.4 6.3 25 90-114 385-409 (579)
30 COG1433 Uncharacterized conser 34.0 84 0.0018 24.7 4.5 64 12-75 32-107 (121)
31 cd04703 Asparaginase_2_like A 33.7 36 0.00079 30.0 2.6 25 93-118 219-243 (246)
32 PLN02937 Putative isoaspartyl 31.2 48 0.001 31.4 3.2 26 172-197 228-253 (414)
33 TIGR01354 cyt_deam_tetra cytid 29.1 1.4E+02 0.003 23.2 5.0 37 158-194 4-43 (127)
34 TIGR00066 g_glut_trans gamma-g 29.0 72 0.0016 30.8 4.0 25 92-116 341-365 (516)
35 PF02579 Nitro_FeMo-Co: Dinitr 28.8 95 0.0021 21.8 3.8 51 23-73 40-93 (94)
36 PRK00910 ribB 3,4-dihydroxy-2- 25.9 31 0.00067 29.9 0.8 27 38-64 181-207 (218)
37 COG0405 Ggt Gamma-glutamyltran 24.7 2.1E+02 0.0044 28.2 6.3 27 91-117 352-378 (539)
38 PRK09615 ggt gamma-glutamyltra 24.6 90 0.0019 30.8 3.9 23 92-114 389-411 (581)
39 PLN02198 glutathione gamma-glu 24.1 96 0.0021 30.6 3.9 24 92-115 366-389 (573)
40 PF04019 DUF359: Protein of un 23.9 97 0.0021 24.3 3.2 50 2-51 13-76 (121)
41 PF14824 Sirohm_synth_M: Siroh 23.6 27 0.00059 21.0 0.1 18 104-121 2-19 (30)
42 cd04514 Taspase1_like Taspase1 22.8 88 0.0019 28.4 3.2 27 171-197 139-165 (303)
43 PF11858 DUF3378: Domain of un 22.6 54 0.0012 23.9 1.5 24 36-59 47-70 (81)
44 PF07494 Reg_prop: Two compone 21.5 1.6E+02 0.0034 16.1 3.3 19 93-111 4-22 (24)
45 PRK05578 cytidine deaminase; V 21.2 2.1E+02 0.0046 22.5 4.8 39 158-196 7-48 (131)
46 COG0100 RpsK Ribosomal protein 20.7 77 0.0017 25.4 2.1 28 93-121 28-55 (129)
No 1
>PLN02689 Bifunctional isoaspartyl peptidase/L-asparaginase
Probab=100.00 E-value=9.3e-68 Score=473.06 Aligned_cols=211 Identities=67% Similarity=1.051 Sum_probs=188.4
Q ss_pred CeeEEEeCCCCCEeEEeeCCCCccHHHHHHHHhhhCCCeEEechhHHHHHHHcCCCccCCCchhhHHHHHHHHHhcc---
Q 042840 1 MEGCIMDGNSKKCGAVSGFTTVINAISLSRLVMEKNPHIYLAFDGAEAFAREQGVETVDSSHFITIERLKQAKEAKR--- 77 (213)
Q Consensus 1 mDAsiMdG~~~~~GaV~~v~~v~nPi~~Ar~v~e~~~h~~L~G~gA~~fA~~~G~~~~~~~~~it~~~~~~~~~~~~--- 77 (213)
||||||||+++++|||++|++|||||+|||+|||++||+||+|+||++||+++|+|.++|++|+|++++++|++.++
T Consensus 81 lDA~iMdG~~~~~GAV~~v~~vknPI~vAr~Vme~t~H~lLvG~GA~~fA~~~G~~~~~~~~l~t~~~~~~~~~~~~~~~ 160 (318)
T PLN02689 81 MEASIMDGRTRRCGAVSGLTTVVNPISLARLVMEKTPHIYLAFDGAEAFARQQGVETVDNSYFITEENVERLKQAKEANS 160 (318)
T ss_pred EEeEEEeCCCCceEEEeecCCCCCHHHHHHHHHccCCCEEEEChHHHHHHHHcCCCcCCcccccCHHHHHHHHHHHHhcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999888777766543
Q ss_pred cccccCCCCc----------ccccCCCCeEEEEEcCCCCeEEEeecCCCcCccCcccCCCCcccccceecceeEEecchH
Q 042840 78 VQIDYSQPIQ----------KDVEKELPAANVAVDNQGNLAAATSTGGMVNKMVGRIGDTPIIGSRTYANKLCAVSATGK 147 (213)
Q Consensus 78 ~~~~~~~~~~----------~~~~~~dTVGaVa~D~~G~~AaatSTGG~~~K~pGRVGDspi~GaG~yA~~~~AvS~TG~ 147 (213)
...+++.|.. ..+..+||||+||+|.+||||++|||||+++|+|||||||||||||+|||+.|||||||+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~dTVGaValD~~G~lAaaTSTGG~~~K~pGRVGDSpiiGaG~yAd~~~Avs~TG~ 240 (318)
T PLN02689 161 VQFDYRIPLDKPAKAAALAADGDAQPETVGCVAVDSDGNCAAATSTGGLVNKMVGRIGDTPIIGAGTYANHLCAVSATGK 240 (318)
T ss_pred cccccccCCCcccccccccccCCCCCCcEEEEEEeCCCCEEEEECCCCccCCCCcccCCCcccCCchhccCCcEEeeecc
Confidence 2223222221 112368999999999999999999999999999999999999999999999999999998
Q ss_pred --------------HHHHhcCCCHHHHHHHHHHhhcCCCceEEEEecCCcCEEeeecCCCceeEEEeCCCeeEEEeee
Q 042840 148 --------------ALMEFKGLSLKEASAYVVEECVPRGNVGLIVVSASGEVTMPFNTTGKFRACATEDGYSQIGRWA 211 (213)
Q Consensus 148 --------------~~~~~~g~~~~~A~~~~i~~~~~~~~~GvI~v~~~G~~~~~~nt~~M~~a~~~~d~~~~~~~~~ 211 (213)
..|++.|++|++|++++|++.++.+.+|+|+||++|+++++|||++|+|||+..++.+++.+|+
T Consensus 241 GE~iir~~~A~~v~~~m~~~g~s~~~A~~~~i~~~~~~~~gG~Iavd~~G~~~~~~nt~~m~~a~~~~~g~~~~~~~~ 318 (318)
T PLN02689 241 GEAIIRGTVARDVAAVMEYKGLPLQEAVDYVIKERLPEGPAGLIAVSATGEVAMAFNTTGMFRACATEDGFMEVGIWP 318 (318)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhCcCCceEEEEEcCCccEEEEeCCcCeEEEEEeCCCceEEeecC
Confidence 3355579999999999998876668999999999999999999999999999999999999874
No 2
>PRK10226 isoaspartyl peptidase; Provisional
Probab=100.00 E-value=7.1e-66 Score=460.08 Aligned_cols=211 Identities=43% Similarity=0.669 Sum_probs=185.1
Q ss_pred CeeEEEeCCCCCEeEEeeCCCCccHHHHHHHHhhhCCCeEEechhHHHHHHHcCCCccCCCchhhHHHHHHHHHhcccc-
Q 042840 1 MEGCIMDGNSKKCGAVSGFTTVINAISLSRLVMEKNPHIYLAFDGAEAFAREQGVETVDSSHFITIERLKQAKEAKRVQ- 79 (213)
Q Consensus 1 mDAsiMdG~~~~~GaV~~v~~v~nPi~~Ar~v~e~~~h~~L~G~gA~~fA~~~G~~~~~~~~~it~~~~~~~~~~~~~~- 79 (213)
||||||||+++++|||++|++|||||+|||+|||++||+||+|+||++||+++|+++++|++|+|+++|++|++.+...
T Consensus 82 lDAsiMdG~t~~~GAV~~l~~vknPi~vAr~vme~t~hv~LvG~gA~~fA~~~G~~~~~~~~l~t~~~~~~~~~~~~~~~ 161 (313)
T PRK10226 82 LDACVMDGNTLKAGAVAGVSHLRNPVLAARLVMEQSPHVMMIGEGAENFAFAHGMERVSPEIFSTPLRYEQLLAARAEGA 161 (313)
T ss_pred EEeEEEeCCCCceeEEEecCCCCCHHHHHHHHHhcCCCeEEEcHHHHHHHHHcCCCcCCcccccCHHHHHHHHHHHhhcc
Confidence 7999999999999999999999999999999999999999999999999999999999999999999988887654321
Q ss_pred --cccC-CCCcccccCCCCeEEEEEcCCCCeEEEeecCCCcCccCcccCCCCcccccceecc-eeEEecchH--HH----
Q 042840 80 --IDYS-QPIQKDVEKELPAANVAVDNQGNLAAATSTGGMVNKMVGRIGDTPIIGSRTYANK-LCAVSATGK--AL---- 149 (213)
Q Consensus 80 --~~~~-~~~~~~~~~~dTVGaVa~D~~G~~AaatSTGG~~~K~pGRVGDspi~GaG~yA~~-~~AvS~TG~--~~---- 149 (213)
.+.. .|. .....+||||+||+|.+||+|++|||||+++|+|||||||||||||+|||+ .+||||||+ .+
T Consensus 162 ~~~~~~~~~~-~~~~~~dTVGaValD~~G~lAaaTSTGG~~~K~pGRVGDSpi~GAG~yAd~~~~A~s~TG~GE~iir~~ 240 (313)
T PRK10226 162 TVLDHSGAPL-DEKQKMGTVGAVALDLDGNLAAATSTGGMTNKLPGRVGDSPLVGAGCYANNASVAVSCTGTGEVFIRAL 240 (313)
T ss_pred cccccccCcc-ccCCCCCCEEEEEEeCCCCEEEEECCCCccCCCCCccCCCCCcCCeeeecCCceEEEeeccHHHHHHHh
Confidence 1110 111 122458999999999999999999999999999999999999999999986 599999998 22
Q ss_pred --------HHhcCCCHHHHHHHHHHhhc--CCCceEEEEecCCcCEEeeecCCCceeEEEeCCCeeEEEeeec
Q 042840 150 --------MEFKGLSLKEASAYVVEECV--PRGNVGLIVVSASGEVTMPFNTTGKFRACATEDGYSQIGRWAY 212 (213)
Q Consensus 150 --------~~~~g~~~~~A~~~~i~~~~--~~~~~GvI~v~~~G~~~~~~nt~~M~~a~~~~d~~~~~~~~~~ 212 (213)
|++.+++|++|++++|++.. .++.+|+|+||++|+++++|||++|+|+|+..++.+++.+|.+
T Consensus 241 ~A~~v~~~m~~gg~~~~~A~~~~i~~~~~~~gg~gG~Iavd~~G~~~~~~nt~~M~~~~~~~~g~~~~~~~~~ 313 (313)
T PRK10226 241 AAYDIAALMDYGGLSLAEACERVVMEKLPALGGSGGLIAIDHEGNVALPFNTEGMYRAWGYAGDTPTTGIYRE 313 (313)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCceEEEEEcCCCCEEEEeCCcccceEEEeCCCcEEEeecCC
Confidence 34356999999999997643 2578999999999999999999999999999999999999864
No 3
>COG1446 Asparaginase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-60 Score=420.08 Aligned_cols=208 Identities=42% Similarity=0.575 Sum_probs=175.1
Q ss_pred CeeEEEeCCCCCEeEEeeCCCCccHHHHHHHHhhhCCCeEEechhHHHHHHHcCCCccCCCchhh--HHHHHHHHHhccc
Q 042840 1 MEGCIMDGNSKKCGAVSGFTTVINAISLSRLVMEKNPHIYLAFDGAEAFAREQGVETVDSSHFIT--IERLKQAKEAKRV 78 (213)
Q Consensus 1 mDAsiMdG~~~~~GaV~~v~~v~nPi~~Ar~v~e~~~h~~L~G~gA~~fA~~~G~~~~~~~~~it--~~~~~~~~~~~~~ 78 (213)
||||||||+++++|+|++|++|||||++||.||+++||+||+|+||.+||+++|+|. .++++.+ +++|.++++....
T Consensus 77 mDA~iMdG~~~~aGaVa~v~~vk~Pi~~Ar~Vm~~t~hVll~G~gA~~fA~~~G~p~-~~~~~t~~~r~~~~~~~~~~~~ 155 (307)
T COG1446 77 MDASIMDGATLRAGAVAAVEGVKNPILAARAVMEKTPHVLLVGEGAVAFAREMGLPR-EYDPFTEERRAEWLQAERDAKK 155 (307)
T ss_pred EeeeeeeccccccceeeehhhccCHHHHHHHHHhCCCeEEEeccCHHHHHHHcCCCc-CCCccchHHHHHHHHHhhhhhh
Confidence 899999999999999999999999999999999999999999999999999999999 4444433 4445554443221
Q ss_pred -ccccCC-C--CcccccCCCCeEEEEEcCCCCeEEEeecCCCcCccCcccCCCCcccccceecc-eeEEecchH------
Q 042840 79 -QIDYSQ-P--IQKDVEKELPAANVAVDNQGNLAAATSTGGMVNKMVGRIGDTPIIGSRTYANK-LCAVSATGK------ 147 (213)
Q Consensus 79 -~~~~~~-~--~~~~~~~~dTVGaVa~D~~G~~AaatSTGG~~~K~pGRVGDspi~GaG~yA~~-~~AvS~TG~------ 147 (213)
..+++. + ......+|||||+||+|.+||||++|||||+++|+|||||||||||+||||++ .+|+||||.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~gTVGaVAlD~~G~lAaaTSTGG~~~k~~GRVGDSPipGAG~ya~~~~~AvS~TG~GE~~ir 235 (307)
T COG1446 156 QVLDHSKTYEEPEDPDSKHGTVGAVALDADGNLAAATSTGGVFLKRPGRVGDSPIPGAGFYAENGAGAVSCTGVGEVIIR 235 (307)
T ss_pred cccchhhhcccccCCcccCCceeEEEEeCCCcEEEEEccCccccCCCCccCCCCCCCCceeecCCcceeeccchhHHHHH
Confidence 111111 1 11224569999999999999999999999999999999999999999999998 799999998
Q ss_pred --------HHHHhcCCCHHHHHHHHHHhhcC--CCceEEEEecCCcCEEeeecCCCceeEEEeCCCeeEEEee
Q 042840 148 --------ALMEFKGLSLKEASAYVVEECVP--RGNVGLIVVSASGEVTMPFNTTGKFRACATEDGYSQIGRW 210 (213)
Q Consensus 148 --------~~~~~~g~~~~~A~~~~i~~~~~--~~~~GvI~v~~~G~~~~~~nt~~M~~a~~~~d~~~~~~~~ 210 (213)
..|++ |+++++|++++|.+.+. .+.+|+|+||++|++.++|||+.|++||++.++.+.+.+|
T Consensus 236 ~~~a~~i~~~~~~-g~~l~~A~~~vv~~~~~~~g~~~G~IavD~~G~v~~~~n~~gm~~a~~~~~~~~~~~~~ 307 (307)
T COG1446 236 NALAFDIAARVRY-GLSLDAACERVVEEALKALGGDGGLIAVDAKGNVAAAFNTKGMLRAWIKGGGIPTTAIY 307 (307)
T ss_pred HhHHHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCcCceEEEcCCCCeeecccchhhhhheecCCCccccccC
Confidence 33555 99999999999987552 5669999999999999999999999999999887776654
No 4
>cd04513 Glycosylasparaginase Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoproteins. This enzyme is an amidase located inside lysosomes. Mutation of this gene in humans causes a genetic disorder known as aspartylglycosaminuria (AGU). The glycosylasparaginase precursor undergoes autoproteolysis through an N-O or N-S acyl rearrangement of the peptide bond, which leads to the cleavage of a peptide bond between an Asp and a Thr. This proteolysis step generates an exposed N-terminal catalytic threonine and activates the enzyme.
Probab=100.00 E-value=6e-60 Score=412.78 Aligned_cols=183 Identities=34% Similarity=0.469 Sum_probs=163.9
Q ss_pred CeeEEEeCCCCCEeEEeeCCCCccHHHHHHHHhhhCCCeEEechhHHHHHHHcCCCccCCCchhhHHHHHHHHHhccccc
Q 042840 1 MEGCIMDGNSKKCGAVSGFTTVINAISLSRLVMEKNPHIYLAFDGAEAFAREQGVETVDSSHFITIERLKQAKEAKRVQI 80 (213)
Q Consensus 1 mDAsiMdG~~~~~GaV~~v~~v~nPi~~Ar~v~e~~~h~~L~G~gA~~fA~~~G~~~~~~~~~it~~~~~~~~~~~~~~~ 80 (213)
||||||||+++++|||++|++|||||++||+|||++||+||+|+||++||+++|++ +++|+|++++++|+++++..
T Consensus 59 lDAsiMdG~~~~~GaV~~v~~vknPi~vAr~vme~t~h~~LvG~gA~~fA~~~G~~---~~~l~t~~~~~~~~~~~~~~- 134 (263)
T cd04513 59 LDAAIMDGNTMRVGAVAALRGIKNAISVARAVMEHTKHTLLVGEGATRFAVSMGFP---EENLLTERSRKAWKKWLEEN- 134 (263)
T ss_pred EEeEEEecCCCceEEEEecCCCCCHHHHHHHHHhhCCCeEEeCHHHHHHHHHcCCC---CCcCCCHHHHHHHHHHHhcC-
Confidence 79999999999999999999999999999999999999999999999999999997 57899988888888775421
Q ss_pred ccCCCCcccccCCCCeEEEEEcCCCCeEEEeecCCCcCccCcccCCCCcccccceecce-eEEecchH--HHHHh-----
Q 042840 81 DYSQPIQKDVEKELPAANVAVDNQGNLAAATSTGGMVNKMVGRIGDTPIIGSRTYANKL-CAVSATGK--ALMEF----- 152 (213)
Q Consensus 81 ~~~~~~~~~~~~~dTVGaVa~D~~G~~AaatSTGG~~~K~pGRVGDspi~GaG~yA~~~-~AvS~TG~--~~~~~----- 152 (213)
..+||||+||+|.+||+|++|||||+++|+|||||||||||||+|||+. +||||||+ .+|++
T Consensus 135 ----------~~~dTVGaValD~~G~laaatSTGG~~~K~pGRVGDspiiGaG~yAd~~~~a~s~TG~GE~iir~~~A~~ 204 (263)
T cd04513 135 ----------CNHDTIGMIALDANGNIAAGTSTSGAAFKIPGRVGDSPIPGAGAYADSEVGAAAATGDGEEMMRFLPSFQ 204 (263)
T ss_pred ----------CCCCCEEEEEEeCCCCEEEEECCCCccCccCCccCCCCCCCceeeecCCceEEEeeccHHHHHHHHHHHH
Confidence 2489999999999999999999999999999999999999999999864 99999998 33221
Q ss_pred ------cCCCHHHHHHHHHHhh---c--CCCceEEEEecCCcCEEeeecCC-CceeE
Q 042840 153 ------KGLSLKEASAYVVEEC---V--PRGNVGLIVVSASGEVTMPFNTT-GKFRA 197 (213)
Q Consensus 153 ------~g~~~~~A~~~~i~~~---~--~~~~~GvI~v~~~G~~~~~~nt~-~M~~a 197 (213)
.|++|++|++++|++. + +++.+|+|+||++|+++++||+. .|.+.
T Consensus 205 v~~~m~~G~~~~~A~~~~i~~~~~~~~~~~~~gg~Iavd~~G~~~~~~~~~~~~~~~ 261 (263)
T cd04513 205 AVEYMRQGMSPKEACLEAIKRIAKHFDGPDFEGAVVALNKKGEYGAACNGLTEFTYA 261 (263)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCcCCCcEEEEEEcCCCCEEEEEccCCCEEEE
Confidence 7899999999999763 2 36889999999999999999998 66654
No 5
>PLN02937 Putative isoaspartyl peptidase/L-asparaginase
Probab=100.00 E-value=3.9e-59 Score=429.61 Aligned_cols=211 Identities=24% Similarity=0.372 Sum_probs=171.8
Q ss_pred CeeEEEeCCCCCEeEEeeCCCCccHHHHHHHHhh----------hCCCeEEechhHHHHHHHcCC---Ccc--CCCchhh
Q 042840 1 MEGCIMDGNSKKCGAVSGFTTVINAISLSRLVME----------KNPHIYLAFDGAEAFAREQGV---ETV--DSSHFIT 65 (213)
Q Consensus 1 mDAsiMdG~~~~~GaV~~v~~v~nPi~~Ar~v~e----------~~~h~~L~G~gA~~fA~~~G~---~~~--~~~~~it 65 (213)
||||||||+++++|||++|++|||||+|||+||+ ++||+||+|+||++||+++|| +++ ++++|+|
T Consensus 86 lDAsIMDG~t~~~GAVaav~~VkNPI~vAr~Vme~~~~~~~~l~~t~HvlLvGeGA~~fA~~~G~~~~e~~~~~~~~L~T 165 (414)
T PLN02937 86 CDASIMDGDSGAFGAVGAVPGVRNAIQIAALLAKEQMMGSSLLGRIPPMFLVGEGARQWAKSKGIDLPETVEEAEKWLVT 165 (414)
T ss_pred EEeEEEeCCCCceeEEEecCCCCCHHHHHHHHHHhhcccccccCCCCCeEEECHHHHHHHHHcCCCccccccCCcccccC
Confidence 7999999999999999999999999999999976 899999999999999999999 443 6899999
Q ss_pred HHHHHHHHHhcccccccC-----------------CCC-----------------cccccCCCCeEEEEEcCCCCeEEEe
Q 042840 66 IERLKQAKEAKRVQIDYS-----------------QPI-----------------QKDVEKELPAANVAVDNQGNLAAAT 111 (213)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~-----------------~~~-----------------~~~~~~~dTVGaVa~D~~G~~Aaat 111 (213)
++++++|+++++...+.+ .|. ......+||||+||+|.+||||++|
T Consensus 166 ~~s~~~w~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dTVGaValD~~G~iAAaT 245 (414)
T PLN02937 166 ERAKEQWKKYKTMLASAIAKSSCDSQSTSKLSELEAPRSNPSNGTGGGQSSMCTASDEDCIMDTVGVICVDSEGNIASGA 245 (414)
T ss_pred HHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccCCCCCCCEEEEEEeCCCCEEEEE
Confidence 887777776654221100 000 0112368999999999999999999
Q ss_pred ecCCCcCccCcccCCCCcccccceecc--------eeEEecchH--HH------------HHhcCCCHHHHHHHHHHhhc
Q 042840 112 STGGMVNKMVGRIGDTPIIGSRTYANK--------LCAVSATGK--AL------------MEFKGLSLKEASAYVVEECV 169 (213)
Q Consensus 112 STGG~~~K~pGRVGDspi~GaG~yA~~--------~~AvS~TG~--~~------------~~~~g~~~~~A~~~~i~~~~ 169 (213)
||||+++|+|||||||||||||+|||+ .+||||||+ .+ +++.|++|++|++++|++.+
T Consensus 246 STGG~~~K~pGRVGDSPIiGAG~yAdn~~~~g~~~~~a~saTG~GE~iiR~~~A~~~~~~~~~~g~~p~~Aa~~~i~~~~ 325 (414)
T PLN02937 246 SSGGIAMKVSGRVGLAAMYGSGCWASSKGPFGAPFIVGCCVSGAGEYLMRGFAARECCVSSSLSQAGPASACMKVLRSVI 325 (414)
T ss_pred CCCccccCCCCccCCCCCCCceeeecCccccccCceEEEeeeccHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999986 499999998 22 33478999999999997643
Q ss_pred -------CCCceEEEEecCCc--------------CEEeeecCCCceeEEEeCC-CeeEEEeee
Q 042840 170 -------PRGNVGLIVVSASG--------------EVTMPFNTTGKFRACATED-GYSQIGRWA 211 (213)
Q Consensus 170 -------~~~~~GvI~v~~~G--------------~~~~~~nt~~M~~a~~~~d-~~~~~~~~~ 211 (213)
.++.+|+|+||++| +++++|+|.+|.+||+... .+|++.|..
T Consensus 326 ~~~~~~~~~~~gGvI~vd~~g~~~~~~nt~~m~~~e~~~a~~~~sf~~gy~~~~~~~~k~~~~~ 389 (414)
T PLN02937 326 QGSSAKTTDKDAGILLVQADASVMAPGNSPSLKAVEIAAAYSSLSFGIGYFGSSMERPKVSILR 389 (414)
T ss_pred hhccccccCCceEEEEEeCCCCeecccCCcccccceeeeeeccCcceEEEecCcCcCCeEEEec
Confidence 25899999999975 5666666667777888654 367776653
No 6
>PF01112 Asparaginase_2: Asparaginase; InterPro: IPR000246 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Threonine peptidases are characterised by a threonine nucleophile at the N terminus of the mature enzyme. The threonine peptidases belong to clan PB or are unassigned, clan T-. The type example for this clan is the archaean proteasome beta component of Thermoplasma acidophilum. This group of sequences have a signature that places them in MEROPS peptidase family T2 (clan PB(T)). The glycosylasparaginases (3.5.1.26 from EC) are threonine peptidases. Also in this family is L-asparaginase (3.5.1.1 from EC), which catalyses the following reaction: L-asparagine + H2O = L-aspartate + NH3 Glycosylasparaginase catalyses: N4-(beta-N-acetyl-D-glucosaminyl)-L-asparagine + H(2)O = N-acetyl-beta-glucosaminylamine + L-aspartate cleaving the GlcNAc-Asn bond that links oligosaccharides to asparagine in N-linked glycoproteins. The enzyme is composed of two non-identical alpha/beta subunits joined by strong non-covalent forces and has one glycosylation site located in the alpha subunit [] and plays a major role in the degradation of glycoproteins.; GO: 0016787 hydrolase activity; PDB: 1APY_D 1APZ_C 2GEZ_E 2GL9_B 2GAC_D 2GAW_C 1AYY_A 1P4V_C 9GAF_A 1P4K_A ....
Probab=100.00 E-value=4.2e-59 Score=418.44 Aligned_cols=205 Identities=41% Similarity=0.640 Sum_probs=158.7
Q ss_pred CeeEEEeCCCCCEeEEeeCCCCccHHHHHHHHhhhCCCeEEechhHHHHHHHcCCCccCCCchhhHHHHHHHHHhcccc-
Q 042840 1 MEGCIMDGNSKKCGAVSGFTTVINAISLSRLVMEKNPHIYLAFDGAEAFAREQGVETVDSSHFITIERLKQAKEAKRVQ- 79 (213)
Q Consensus 1 mDAsiMdG~~~~~GaV~~v~~v~nPi~~Ar~v~e~~~h~~L~G~gA~~fA~~~G~~~~~~~~~it~~~~~~~~~~~~~~- 79 (213)
||||||||+++++|||++|++|||||+|||+||++++|+||+|+||++||+++|++.+++.+++|+++|++|++.+...
T Consensus 80 ~DAsiMdg~~~~~GaV~~v~~v~nPI~vAr~v~~~~~h~lLvG~gA~~fA~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (319)
T PF01112_consen 80 MDASIMDGDTLRFGAVAAVRGVKNPISVARKVMEQTPHVLLVGEGAEKFAKENGFELVDPESLITERRWEKWKKAKEQKR 159 (319)
T ss_dssp EEEEEEETTTTEEEEEEEESSBS-HHHHHHHHHHHSS-SEEEHHHHHHHHHHTT--B--GGGHHHHHHHHHHHHHHHHHC
T ss_pred EeeEEEecCCcccceEEEecCCCCHHHHHHHHHHhcccceecchHHHHHHHhcCCcccccccchhhHHHHHHHHhhhhcc
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999988765432
Q ss_pred --cccCCC-------CcccccCCCCeEEEEEcCCCCeEEEeecCCCcCccCcccCCCCcccccceecceeEEecchH--H
Q 042840 80 --IDYSQP-------IQKDVEKELPAANVAVDNQGNLAAATSTGGMVNKMVGRIGDTPIIGSRTYANKLCAVSATGK--A 148 (213)
Q Consensus 80 --~~~~~~-------~~~~~~~~dTVGaVa~D~~G~~AaatSTGG~~~K~pGRVGDspi~GaG~yA~~~~AvS~TG~--~ 148 (213)
.++..+ ....+..+||||+||+|.+|++|++|||||+++|+|||||||||||||+|||+.++|||||+ .
T Consensus 160 ~~~d~~~~~~~~~~~l~~~~~~~dTVGaVa~D~~G~iaaatSTGG~~~K~pGRVGdspi~GaG~yAd~~~gvs~TG~GE~ 239 (319)
T PF01112_consen 160 LIPDPSKSQPPVQDYLDEEDSGHDTVGAVALDTNGNIAAATSTGGIFFKLPGRVGDSPIIGAGFYADNEVGVSCTGHGED 239 (319)
T ss_dssp HBSSTTT-------SEEBTTCTC--EEEEEEETTS-EEEEEEEE-STTB-TTEE-STTSTTTSEEEETTTEEEEEE-HHH
T ss_pred ccccccccccccccccccccccCCCeeEEEEECCCCEEEEecCCCccceecccccceeecChhheeecccceeccCCHHH
Confidence 222111 00112259999999999999999999999999999999999999999999998766888887 4
Q ss_pred HHHh-----------cCCC-HHHHHHHHHHhhcCCCceEEEEecCCcCEEeeecCCCceeEEEeCCCee
Q 042840 149 LMEF-----------KGLS-LKEASAYVVEECVPRGNVGLIVVSASGEVTMPFNTTGKFRACATEDGYS 205 (213)
Q Consensus 149 ~~~~-----------~g~~-~~~A~~~~i~~~~~~~~~GvI~v~~~G~~~~~~nt~~M~~a~~~~d~~~ 205 (213)
+|+. .++. +.+++.+.|.+.++.+.+|+|+||++|+++++|||+.|+++|...|++.
T Consensus 240 iir~~lA~~i~~~~~~g~~~a~~aa~~~i~~~~~~~~~GvIav~~~G~~~~~~n~~~m~~~~~~~~~~~ 308 (319)
T PF01112_consen 240 IIRTLLARRIVERMRDGMQSAAEAAIKRIMEKFPRGTGGVIAVDKKGNIGIAFNSPGMFRYYAVQDGTV 308 (319)
T ss_dssp HHHTTHHHHHHHHHHTT-HHHHHHHHHHHHHHHHCTSEEEEEEETTS-EEEEESSSCEEEEEEEECTCE
T ss_pred HHHhhHHHHHHHHhhhccHHHHHHHHHHHHHhCCCCceEEEEEcCCCCEEEEEecCcceeeEEecCCcc
Confidence 4332 4442 4455556665655569999999999999999999999999777777653
No 7
>cd04702 ASRGL1_like ASRGL1_like domains, a subfamily of the L-Asparaginase type 2-like enzymes. The wider family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue. ASRGL1, or asparaginase-like 1, has been cloned from mammalian testis cDNA libraries. It has been identified as a sperm antigen that may induce the production of autoantibodies following obstruction of the male reproductive tract, e.g. vasectomy.
Probab=100.00 E-value=4e-58 Score=399.86 Aligned_cols=170 Identities=46% Similarity=0.671 Sum_probs=157.9
Q ss_pred CeeEEEeCCCCCEeEEeeCCCCccHHHHHHHHhhhCCCeEEechhHHHHHHHcCCCccCCCchhhHHHHHHHHHhccccc
Q 042840 1 MEGCIMDGNSKKCGAVSGFTTVINAISLSRLVMEKNPHIYLAFDGAEAFAREQGVETVDSSHFITIERLKQAKEAKRVQI 80 (213)
Q Consensus 1 mDAsiMdG~~~~~GaV~~v~~v~nPi~~Ar~v~e~~~h~~L~G~gA~~fA~~~G~~~~~~~~~it~~~~~~~~~~~~~~~ 80 (213)
|||+||||+++++|||++|++|||||+|||+|||++||+||+|+||++||+++|
T Consensus 75 lDA~iMdG~~~~~GaV~~v~~v~nPi~vAr~vme~t~H~lLvG~gA~~fA~~~G-------------------------- 128 (261)
T cd04702 75 MDASIMDGKTLRAGAVAAVRDIMNPISLARKVMEKTDHVLLVGEGAERFAREMG-------------------------- 128 (261)
T ss_pred EEeEEEeCCCCceEEEEEcCCCCCHHHHHHHHHccCCCEEEEChHHHHHHHHcC--------------------------
Confidence 799999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcccccCCCCeEEEEEcCCCCeEEEeecCCCcCccCcccCCCCcccccceecc-eeEEecchH--HH--------
Q 042840 81 DYSQPIQKDVEKELPAANVAVDNQGNLAAATSTGGMVNKMVGRIGDTPIIGSRTYANK-LCAVSATGK--AL-------- 149 (213)
Q Consensus 81 ~~~~~~~~~~~~~dTVGaVa~D~~G~~AaatSTGG~~~K~pGRVGDspi~GaG~yA~~-~~AvS~TG~--~~-------- 149 (213)
+||||+||+|.+|+||++|||||+++|+|||||||||||||+|||+ .+||||||+ .+
T Consensus 129 ------------~dTVGavalD~~G~laaatSTgG~~~K~~GRVGDspi~GaG~yAd~~~ga~s~TG~GE~iir~~~a~~ 196 (261)
T cd04702 129 ------------LGTVGAVALDASGNIAAATSTGGTTNKLVGRVGDTPLIGCGTYADNKVGAVSTTGHGESIMKVVLARL 196 (261)
T ss_pred ------------CCceEEEEEeCCCCEEEEECCCCccCCCCCcCCCCCcCCCceeecCCceEEEeeccHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999986 699999998 22
Q ss_pred ----HHhcCCCHHHHHHHHHHhhc--CCCceEEEEecCCcCEEeeecCCCceeEEEeCCCeeEEEee
Q 042840 150 ----MEFKGLSLKEASAYVVEECV--PRGNVGLIVVSASGEVTMPFNTTGKFRACATEDGYSQIGRW 210 (213)
Q Consensus 150 ----~~~~g~~~~~A~~~~i~~~~--~~~~~GvI~v~~~G~~~~~~nt~~M~~a~~~~d~~~~~~~~ 210 (213)
|+ .|++|+||++++|++.. .++.+|+|+||++|+++++|||++|+|+|+..+ .++++|+
T Consensus 197 v~~~m~-~g~s~~eA~~~~i~~~~~~~~g~gG~Iavd~~G~~~~a~nt~~m~~a~~~~~-~~~~~~~ 261 (261)
T cd04702 197 ILDHME-QGGSAQEAADKAIEYMTERVKGTGGAIVLDSSGEVGAAFNSKRMAWAYAKDG-QLHYGIV 261 (261)
T ss_pred HHHHHH-cCCCHHHHHHHHHHHHHHHcCCceEEEEEeCCCCEEEEeCCCCceEEEEeCC-eeEEeeC
Confidence 33 78999999999997643 368899999999999999999999999999876 7777764
No 8
>KOG1592 consensus Asparaginase [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-58 Score=407.29 Aligned_cols=212 Identities=47% Similarity=0.640 Sum_probs=187.3
Q ss_pred CeeEEEeCCCCCEeEEeeCCCCccHHHHHHHHhhh--------CCCeEEechhHHHHHHHcCCCccCCCchhhHHHHHHH
Q 042840 1 MEGCIMDGNSKKCGAVSGFTTVINAISLSRLVMEK--------NPHIYLAFDGAEAFAREQGVETVDSSHFITIERLKQA 72 (213)
Q Consensus 1 mDAsiMdG~~~~~GaV~~v~~v~nPi~~Ar~v~e~--------~~h~~L~G~gA~~fA~~~G~~~~~~~~~it~~~~~~~ 72 (213)
||||||||+++++|||++|++|||||+|||+||++ +||+||+|+||++||+++|+++++|+.|+|++...+|
T Consensus 77 ceASiMDGksl~fGaV~~vs~V~nPi~lAr~lm~k~~~~~~griPp~~Lvg~GAe~~A~~~G~~~v~~~~lvTe~~~~~~ 156 (326)
T KOG1592|consen 77 CEASIMDGKSLRFGAVGAVSCVKNPISLARLLMEKQWWGSLGRIPPCFLVGEGAEKFALAHGVETVPPQHLVTERNRFTL 156 (326)
T ss_pred EEeeeecCCCccceeeccccccCCHHHHHHHHHhccccccccCCCceEEechHHHHHHHHcCCcccCCcceecHhHHHHH
Confidence 79999999999999999999999999999999999 9999999999999999999999999999996655554
Q ss_pred HHhcc---cccccC-----CCCcccccCCCCeEEEEEcCCCCeEEEeecCCCcCccCcccCCCCcccccceec----cee
Q 042840 73 KEAKR---VQIDYS-----QPIQKDVEKELPAANVAVDNQGNLAAATSTGGMVNKMVGRIGDTPIIGSRTYAN----KLC 140 (213)
Q Consensus 73 ~~~~~---~~~~~~-----~~~~~~~~~~dTVGaVa~D~~G~~AaatSTGG~~~K~pGRVGDspi~GaG~yA~----~~~ 140 (213)
+++++ ...+.. .|........||||+||+|.+||+|++|||||+.+|+||||||||++|+||||+ ..|
T Consensus 157 ~~~Ke~~~~~~~~~~~~~~~~~~~~~~~~dTVGaV~vD~~Gnia~gtSSGGi~lK~~GRiG~sp~yGaG~wA~~~~~~~~ 236 (326)
T KOG1592|consen 157 KKFKEFLQQVPAPFFPRTEVPETCFDSSLDTVGAVCVDGEGNIAAGTSSGGIVLKMPGRIGDSPIYGAGTWAENTSERTC 236 (326)
T ss_pred hhhHHHHhccccccccccccCCcccccccCcceEEEEeCCCCEEEEeccCCeeccccCcccCCcccCccccccCCCcceE
Confidence 44433 222211 122223456899999999999999999999999999999999999999999998 469
Q ss_pred EEecchH--------------HHHHhcCCCHHHHHHHHHHhhcC--CCceEEEEecCCcCEEeeecCCCceeEEEeCCCe
Q 042840 141 AVSATGK--------------ALMEFKGLSLKEASAYVVEECVP--RGNVGLIVVSASGEVTMPFNTTGKFRACATEDGY 204 (213)
Q Consensus 141 AvS~TG~--------------~~~~~~g~~~~~A~~~~i~~~~~--~~~~GvI~v~~~G~~~~~~nt~~M~~a~~~~d~~ 204 (213)
|||+||+ +.|+++|+++++|++.++...++ ++.+|+|+|..+|++.+.||+..|+|+|.++||.
T Consensus 237 avstTG~GE~l~r~~lAR~~~~~l~~~gl~~~~a~~~~~~~~~~~~dg~~Gli~v~~~~~~~~~f~s~~m~w~~~t~~Gy 316 (326)
T KOG1592|consen 237 AVSTTGHGESLMRTNLAREISTLLEYQGLSLEEAADYVLRPLLAREDGTGGLIVVSASGDVVAPFTSTGMAWAYATEDGY 316 (326)
T ss_pred EEecCCCcHHHHHHHHHHHHHHHHHhcccCHHHHHHhhhhhhhhhccCcccEEEEEecCCeecccCcchhhhhhhcccce
Confidence 9999998 33556999999999999988775 8999999999999999999999999999999999
Q ss_pred eEEEeeec
Q 042840 205 SQIGRWAY 212 (213)
Q Consensus 205 ~~~~~~~~ 212 (213)
.+++|+..
T Consensus 317 ~~~~i~~~ 324 (326)
T KOG1592|consen 317 MEYGIEKP 324 (326)
T ss_pred eeecccCC
Confidence 99999865
No 9
>cd04701 Asparaginase_2 L-Asparaginase type 2. L-Asparaginase hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzyme undergoes an autoproteolytic cleavage into alpha and beta subunits to expose a threonine residue which becomes the N-terminal residue of the beta subunit. The threonine residue plays a central role in hydrolase activity. Some asparaginases can also hydrolyze L-glutamine and are termed glutaminase-asparaginase. This is a member of the Ntn-hydrolase superfamily.
Probab=100.00 E-value=8.9e-58 Score=398.55 Aligned_cols=165 Identities=55% Similarity=0.820 Sum_probs=153.6
Q ss_pred CeeEEEeCCCCCEeEEeeCCCCccHHHHHHHHhhhCCCeEEechhHHHHHHHcCCCccCCCchhhHHHHHHHHHhccccc
Q 042840 1 MEGCIMDGNSKKCGAVSGFTTVINAISLSRLVMEKNPHIYLAFDGAEAFAREQGVETVDSSHFITIERLKQAKEAKRVQI 80 (213)
Q Consensus 1 mDAsiMdG~~~~~GaV~~v~~v~nPi~~Ar~v~e~~~h~~L~G~gA~~fA~~~G~~~~~~~~~it~~~~~~~~~~~~~~~ 80 (213)
||||||||+++++|||++|++|||||+|||+|||++||+||+|+||++||+++|
T Consensus 78 lDAsiMdg~~~~~GaV~~v~~v~nPi~vAr~vme~~~h~~LvG~gA~~fA~~~G-------------------------- 131 (260)
T cd04701 78 LDASIMDGRTLRAGAVAGLRRVKNPILLARAVMEKTPHVLLAGEGAEAFAREQG-------------------------- 131 (260)
T ss_pred EEeEEEeCCCCceEEEEEcCCCCCHHHHHHHHHhcCCCeEEECHHHHHHHHHcC--------------------------
Confidence 799999999999999999999999999999999999999999999999999988
Q ss_pred ccCCCCcccccCCCCeEEEEEcCCCCeEEEeecCCCcCccCcccCCCCcccccceecce-eEEecchH--H---------
Q 042840 81 DYSQPIQKDVEKELPAANVAVDNQGNLAAATSTGGMVNKMVGRIGDTPIIGSRTYANKL-CAVSATGK--A--------- 148 (213)
Q Consensus 81 ~~~~~~~~~~~~~dTVGaVa~D~~G~~AaatSTGG~~~K~pGRVGDspi~GaG~yA~~~-~AvS~TG~--~--------- 148 (213)
.+||||+|++|.+|++|++|||||+++|+|||||||||||||+|||+. +||||||+ .
T Consensus 132 -----------~~dTVGavalD~~G~~aaatSTGG~~~K~pGRVGDSpi~GaG~yAd~~~~avs~TG~GE~iir~~~A~~ 200 (260)
T cd04701 132 -----------KHGTVGAVALDSHGNLAAATSTGGLTNKRPGRIGDTPIIGAGTYADNWSVAVSCTGTGEYFIRVAAAHD 200 (260)
T ss_pred -----------CCCcEEEEEEeCCCCEEEEECCCcccCCCCCccCCCCCCCceeeecCCcEEEEeecchHHHHHHHHHHH
Confidence 169999999999999999999999999999999999999999999864 99999998 2
Q ss_pred ---HHHhcCCCHHHHHHHHHHhhc--CCCceEEEEecCCcCEEeeecCCCceeEEEeCC
Q 042840 149 ---LMEFKGLSLKEASAYVVEECV--PRGNVGLIVVSASGEVTMPFNTTGKFRACATED 202 (213)
Q Consensus 149 ---~~~~~g~~~~~A~~~~i~~~~--~~~~~GvI~v~~~G~~~~~~nt~~M~~a~~~~d 202 (213)
.|++.|++|++|++++|++.. .++++|+|+||++|+++++|||++|+|||+.++
T Consensus 201 v~~~~~~~g~~~~~A~~~~i~~~~~~~~~~~GiIaid~~G~~~~~~nt~~m~~a~~~~~ 259 (260)
T cd04701 201 VAARVRYAGLSLADAAEAVIGEVLETLGGDGGLIAVDARGNVAMPFNTGGMYRGWISED 259 (260)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEcCCccEEEEeCCCccEEEEEcCC
Confidence 244358999999999998754 368899999999999999999999999998765
No 10
>cd04512 Ntn_Asparaginase_2_like Ntn-hydrolase superfamily, L-Asparaginase type 2-like enzymes. This family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoprotein. Taspase1 catalyzes the cleavage of the Mix Lineage Leukemia (MLL) nuclear protein and transcription factor TFIIA. L-Asparaginase type 2 hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzymes of this family undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.
Probab=100.00 E-value=2.3e-56 Score=387.18 Aligned_cols=161 Identities=45% Similarity=0.644 Sum_probs=150.3
Q ss_pred CeeEEEeCCCCCEeEEeeCCCCccHHHHHHHHhhhCCCeEEechhHHHHHHHcCCCccCCCchhhHHHHHHHHHhccccc
Q 042840 1 MEGCIMDGNSKKCGAVSGFTTVINAISLSRLVMEKNPHIYLAFDGAEAFAREQGVETVDSSHFITIERLKQAKEAKRVQI 80 (213)
Q Consensus 1 mDAsiMdG~~~~~GaV~~v~~v~nPi~~Ar~v~e~~~h~~L~G~gA~~fA~~~G~~~~~~~~~it~~~~~~~~~~~~~~~ 80 (213)
||||||||+++++|+|++|++|||||++||+|||++||+||+|++|++||+++|
T Consensus 72 lDAsiMdg~~~~~GaV~~v~~v~nPi~vAr~vme~t~h~~LvG~gA~~fA~~~G-------------------------- 125 (248)
T cd04512 72 MDAGIMDGKSLAFGAVAAIEGIKNPVSVARAVMEKTPHVLLVGEGALEFALDHG-------------------------- 125 (248)
T ss_pred EEeEEEeCCCCceEEEEEcCCCCCHHHHHHHHHhcCCCeEEEChHHHHHHHHhC--------------------------
Confidence 799999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCcccccCCCCeEEEEEcCCCCeEEEeecCCCcCccCcccCCCCcccccceecc-eeEEecchH--HHHHh-----
Q 042840 81 DYSQPIQKDVEKELPAANVAVDNQGNLAAATSTGGMVNKMVGRIGDTPIIGSRTYANK-LCAVSATGK--ALMEF----- 152 (213)
Q Consensus 81 ~~~~~~~~~~~~~dTVGaVa~D~~G~~AaatSTGG~~~K~pGRVGDspi~GaG~yA~~-~~AvS~TG~--~~~~~----- 152 (213)
+||||+|++|.+|++|++|||||+++|+|||||||||||||+|||+ .+||||||+ .+|+.
T Consensus 126 ------------~dTVGavalD~~G~~aaatSTGG~~~K~pGRVGDspi~GaG~yAd~~~~a~s~TG~GE~iir~~~a~~ 193 (248)
T cd04512 126 ------------LDTVGAVALDGQGNLAAATSTGGMSLKLPGRVGDSPIIGAGFYADNEAGAASTTGHGEAIIRTVLARR 193 (248)
T ss_pred ------------cCcEEEEEEeCCCCEEEEECCCcccCCCCCccCCCCccCceeeecCCcEEEEeeecHHHHHHHHHHHH
Confidence 3899999999999999999999999999999999999999999986 599999998 33221
Q ss_pred ------cCCCHHHHHHHHHHhhc--CCCceEEEEecCCcCEEeeecCCCceeEEE
Q 042840 153 ------KGLSLKEASAYVVEECV--PRGNVGLIVVSASGEVTMPFNTTGKFRACA 199 (213)
Q Consensus 153 ------~g~~~~~A~~~~i~~~~--~~~~~GvI~v~~~G~~~~~~nt~~M~~a~~ 199 (213)
.|++|++|++++|++.. .++.+|+|+||++|+++++|||++|+|+|+
T Consensus 194 v~~~~~~g~~~~~A~~~~i~~~~~~~~~~~G~Ia~d~~G~~~~a~~~~~m~~a~~ 248 (248)
T cd04512 194 VVELMEQGMAAQAAAETAVEELGSLKGGQGGVIAVDSKGEFGAAFNTAGMTVAYH 248 (248)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhcCCeEEEEEEeCCCCEEEEECcCCceEEeC
Confidence 78999999999998754 468999999999999999999999999984
No 11
>cd04703 Asparaginase_2_like A subfamily of the L-Asparaginase type 2-like enzymes. The wider family, a member of the Ntn-hydrolase superfamily, includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.
Probab=100.00 E-value=2.2e-56 Score=386.69 Aligned_cols=164 Identities=35% Similarity=0.456 Sum_probs=150.7
Q ss_pred CeeEEEeCCCCCEeEEeeCCCCccHHHHHHHHhhhCCCeEEechhHHHHHHHcCCCccCCCchhhHHHHHHHHHhccccc
Q 042840 1 MEGCIMDGNSKKCGAVSGFTTVINAISLSRLVMEKNPHIYLAFDGAEAFAREQGVETVDSSHFITIERLKQAKEAKRVQI 80 (213)
Q Consensus 1 mDAsiMdG~~~~~GaV~~v~~v~nPi~~Ar~v~e~~~h~~L~G~gA~~fA~~~G~~~~~~~~~it~~~~~~~~~~~~~~~ 80 (213)
||||||||+ +++|||++|++|||||+|||+|||++||+||+|+||++||+++|++.
T Consensus 68 ~DAsiMdg~-~~~GaV~~v~~vknPi~vAr~vme~t~h~lLvG~gA~~fA~~~G~~~----------------------- 123 (246)
T cd04703 68 TDAGVMTSD-GDFGAVAAMQGVEHPVLVARAVMEETPHVLLAGDGAVKFAALTGVED----------------------- 123 (246)
T ss_pred EEeEEEeCC-CCeeEEEEcCCCCCHHHHHHHHHhcCCCeEEECHHHHHHHHHhCCCC-----------------------
Confidence 799999997 89999999999999999999999999999999999999999999980
Q ss_pred ccCCCCcccccCCCCeEEEEEcCCCCeEEEeecCCCcCccCcccCCCCcccccceecceeEEecchH--HHHHh------
Q 042840 81 DYSQPIQKDVEKELPAANVAVDNQGNLAAATSTGGMVNKMVGRIGDTPIIGSRTYANKLCAVSATGK--ALMEF------ 152 (213)
Q Consensus 81 ~~~~~~~~~~~~~dTVGaVa~D~~G~~AaatSTGG~~~K~pGRVGDspi~GaG~yA~~~~AvS~TG~--~~~~~------ 152 (213)
...+||||+|++|. ||+|++|||||+++|+|||||||||||||+|||+.+||||||+ .+|++
T Consensus 124 ---------~~~~dTVG~valD~-G~laaatSTGG~~~K~pGRVGDspi~GaG~yAd~~gavs~TG~GE~iir~~~A~~v 193 (246)
T cd04703 124 ---------PGGHDTVGAVARDG-GRLAAATSTGGRWPALAGRVGDVPQPGAGFYAGPRGAVSATGAGEAIARNTLARSA 193 (246)
T ss_pred ---------CCCCCCEEEEEEEC-CCEEEEECCCcccCCCCCccCCCCCCCccccccCCceEEeeecHHHHHHHHHHHHH
Confidence 02379999999999 9999999999999999999999999999999999999999998 33321
Q ss_pred -----cCCCHHHHHHHHHHhhc--CCCceEEEEecCCcCEEeeecCCCceeEEE
Q 042840 153 -----KGLSLKEASAYVVEECV--PRGNVGLIVVSASGEVTMPFNTTGKFRACA 199 (213)
Q Consensus 153 -----~g~~~~~A~~~~i~~~~--~~~~~GvI~v~~~G~~~~~~nt~~M~~a~~ 199 (213)
+|++|++|++++|++.. .++.+|+|+||+ |+++++|||++|+|+|.
T Consensus 194 ~~~~~~g~~~~~A~~~~i~~~~~~~~~~~G~Iavd~-G~~~~~~~s~~m~~a~~ 246 (246)
T cd04703 194 YNRLGTGDPAQDAAKAAISRFSEATGVTAGVIAVDP-EEEGAAYSSAAMQTAVA 246 (246)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEECC-CceEEEeCchhhhhhcC
Confidence 78999999999997643 478999999999 99999999999999983
No 12
>cd04514 Taspase1_like Taspase1_like domains; Taspase1 catalyzes the cleavage of the mix lineage leukemia (MLL) nuclear protein and transcription factor TFIIA. Taspase1 is a threonine aspartase, a member of the Ntn hydrolase superfamily and the type 2 asparaginase family. A threonine residue acts as the active site nucleophile in both endopeptidease and protease activities to cleave polypeptide substrates after an aspartate residue. The Taspase1 proenzyme undergoes autoproteolysis into alpha and beta subunits. The N-terminal residue of the beta subunit is a threonine which is the active catalytic residue. The active enzyme is a heterotetramer.
Probab=100.00 E-value=1e-54 Score=386.69 Aligned_cols=170 Identities=31% Similarity=0.433 Sum_probs=154.4
Q ss_pred CeeEEEeCCCCCEeEEeeCCCCccHHHHHHHHhhhC----------CCeEEechhHHHHHHHcCCCccCCCchhhHHHHH
Q 042840 1 MEGCIMDGNSKKCGAVSGFTTVINAISLSRLVMEKN----------PHIYLAFDGAEAFAREQGVETVDSSHFITIERLK 70 (213)
Q Consensus 1 mDAsiMdG~~~~~GaV~~v~~v~nPi~~Ar~v~e~~----------~h~~L~G~gA~~fA~~~G~~~~~~~~~it~~~~~ 70 (213)
||||||||+++++|||++|++|||||+|||.|||++ ||+||+|+||++||+++|+
T Consensus 74 ~DAsiMdg~~~~~GaV~~v~~vknPI~lAr~vme~~~~~~~~~g~~~h~~LvG~gA~~fA~~~G~--------------- 138 (303)
T cd04514 74 CDASIMDGKTLRFGAVGAVSGVKNPISLARRLLEEQSKGPLSLGRIPPDFLVGEGARQWAKSHGI--------------- 138 (303)
T ss_pred EEeEEEeCCCCceEEEEEcCCCCCHHHHHHHHHHhCcccccccCCCCceEEEcHHHHHHHHHhCC---------------
Confidence 799999999999999999999999999999999987 7999999999999999998
Q ss_pred HHHHhcccccccCCCCcccccCCCCeEEEEEcCCCCeEEEeecCCCcCccCcccCCCCcccccceecce-------eEEe
Q 042840 71 QAKEAKRVQIDYSQPIQKDVEKELPAANVAVDNQGNLAAATSTGGMVNKMVGRIGDTPIIGSRTYANKL-------CAVS 143 (213)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~dTVGaVa~D~~G~~AaatSTGG~~~K~pGRVGDspi~GaG~yA~~~-------~AvS 143 (213)
+|||||||+|.+|++|++|||||+++|+|||||||||||||+||++. +|||
T Consensus 139 ----------------------~dTVGaValD~~G~~aaatSTGG~~~K~pGRVGDspi~GaG~yAd~~~~~~~~~~a~s 196 (303)
T cd04514 139 ----------------------LDTVGAVCVDKEGNIAAGVSSGGIALKHPGRVGQAATYGCGCWASKGDPFTPTSVAVS 196 (303)
T ss_pred ----------------------CCCEEEEEEeCCCCEEEEECCCcccCCCCCccCCcCcCCcEEEeccCCcccCceEEEE
Confidence 48999999999999999999999999999999999999999999763 8999
Q ss_pred cchH--HHH------------HhcCCCHHHHHHHHHHhhc-----CCCceEEEEecC-----CcCEEeeecCCCceeEEE
Q 042840 144 ATGK--ALM------------EFKGLSLKEASAYVVEECV-----PRGNVGLIVVSA-----SGEVTMPFNTTGKFRACA 199 (213)
Q Consensus 144 ~TG~--~~~------------~~~g~~~~~A~~~~i~~~~-----~~~~~GvI~v~~-----~G~~~~~~nt~~M~~a~~ 199 (213)
|||+ .+| ++.++++++|++++|.+.. .++++|+|+|+. +|+++|+|||++|+|||+
T Consensus 197 ~TG~GE~iir~~~A~~v~~~~~~~~~~~~~A~~~~i~~~~~~~~~~~~~~G~I~v~~~~~~~~g~~~~~~nt~~M~~a~~ 276 (303)
T cd04514 197 TSGCGEHLIRTQLARECAERLYLSDCSLEQSLQKSFQEKFFNSPELKKLAGAIVVRAEVKTGNVEILWGHTTPSMCVGYM 276 (303)
T ss_pred eeccHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcccccCCceEEEEEEeccccCcEEEEEEeCCchheeeEE
Confidence 9998 332 3244699999999997643 368999999999 999999999999999999
Q ss_pred eCCCeeEEE
Q 042840 200 TEDGYSQIG 208 (213)
Q Consensus 200 ~~d~~~~~~ 208 (213)
..+ +|++-
T Consensus 277 ~~~-~p~~~ 284 (303)
T cd04514 277 SGQ-KPKTK 284 (303)
T ss_pred cCC-CCeeE
Confidence 877 66543
No 13
>KOG1593 consensus Asparaginase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-44 Score=313.12 Aligned_cols=199 Identities=27% Similarity=0.394 Sum_probs=168.9
Q ss_pred CeeEEEeCCCCCEeEEeeCCCCccHHHHHHHHhhhCCCeEEechhHHHHHHHcCCCccCCCchhhHHHHHHHHHhccccc
Q 042840 1 MEGCIMDGNSKKCGAVSGFTTVINAISLSRLVMEKNPHIYLAFDGAEAFAREQGVETVDSSHFITIERLKQAKEAKRVQI 80 (213)
Q Consensus 1 mDAsiMdG~~~~~GaV~~v~~v~nPi~~Ar~v~e~~~h~~L~G~gA~~fA~~~G~~~~~~~~~it~~~~~~~~~~~~~~~ 80 (213)
|||.||||.++++|||+.+|+||+.|++||.|||.+.|.|||||+|..||..+||+.++.++.-|++.|..|+.. ++++
T Consensus 87 lDalvmDg~tM~VGAVa~lrrIkdai~vA~~Vleht~HTlLvGe~At~FA~smGf~~e~Lst~es~~~~s~W~~~-nCQP 165 (349)
T KOG1593|consen 87 LDALVMDGDTMEVGAVADLRRIKDAIRVARHVLEHTQHTLLVGESATAFANSMGFKEEDLSTEESKSWWSDWKAE-NCQP 165 (349)
T ss_pred hhhheecCCceeehhhhhHHHHHHHHHHHHHHHhhhheeeeecccHHHHHHhcCCCccccCCHHHHHHHHHHHHh-cCCc
Confidence 799999999999999999999999999999999999999999999999999999998777666667778888754 4566
Q ss_pred ccCC---C--------Ccc------------------cccCCCCeEEEEEcCCCCeEEEeecCCCcCccCcccCCCCccc
Q 042840 81 DYSQ---P--------IQK------------------DVEKELPAANVAVDNQGNLAAATSTGGMVNKMVGRIGDTPIIG 131 (213)
Q Consensus 81 ~~~~---~--------~~~------------------~~~~~dTVGaVa~D~~G~~AaatSTGG~~~K~pGRVGDspi~G 131 (213)
++|+ | ++. .+..|||+|.|++|..|||+++|||.|..+|+|||||||||||
T Consensus 166 NfwkNV~PDP~~sCGPYkp~~~~~~~~~~~~s~e~~vg~~nHDTIgM~vid~eghi~aGTStNGar~kipGRVGDspIpG 245 (349)
T KOG1593|consen 166 NFWKNVHPDPSSSCGPYKPNKLMRWDSLVNQSDEYLVGPTNHDTIGMVVIDTEGHIAAGTSTNGARFKIPGRVGDSPIPG 245 (349)
T ss_pred chhcccCCCccccCCCCCCCcccccccccccccccccCCCCCCeeeEEEEeccCceeecccCCCceeecCCccCCCCCCC
Confidence 6653 1 110 1257999999999999999999999999999999999999999
Q ss_pred ccceec-ceeEEecchH--HHHHh-----------cCCCHHHHHHHHHHhh---cCCCceEEEEecCCcCEEeeecCCCc
Q 042840 132 SRTYAN-KLCAVSATGK--ALMEF-----------KGLSLKEASAYVVEEC---VPRGNVGLIVVSASGEVTMPFNTTGK 194 (213)
Q Consensus 132 aG~yA~-~~~AvS~TG~--~~~~~-----------~g~~~~~A~~~~i~~~---~~~~~~GvI~v~~~G~~~~~~nt~~M 194 (213)
+|.||| +.+|+.+||+ .+|+| +|..|.+|++++|.+. ++++.+.+|+++..|+++.+++.--=
T Consensus 246 agAYAddevGaa~aTGdGDvmMRFLPs~~aVe~Mr~G~~P~eAa~~~i~RI~khfp~F~gAvia~n~~G~ygaaC~g~~~ 325 (349)
T KOG1593|consen 246 AGAYADDEVGAAAATGDGDVMMRFLPSYQAVEQMRAGKKPAEAAQKAISRILKHFPDFSGAVIAANVLGSYGAACYGINN 325 (349)
T ss_pred ccccccccccceeecCCchhHHHhhhHHHHHHHHHcCCChHHHHHHHHHHHHHhCccceeeEEEEeccCchhhhhccccc
Confidence 999997 6799999998 34443 8999999999999653 47899999999999998877665322
Q ss_pred eeEEEe
Q 042840 195 FRACAT 200 (213)
Q Consensus 195 ~~a~~~ 200 (213)
-|+|+.
T Consensus 326 ~F~ymV 331 (349)
T KOG1593|consen 326 KFGYMV 331 (349)
T ss_pred ceeeEe
Confidence 455553
No 14
>PF06267 DUF1028: Family of unknown function (DUF1028); InterPro: IPR010430 This is a family of bacterial and archaeal proteins with unknown function.; PDB: 2IMH_A.
Probab=83.86 E-value=6.7 Score=33.29 Aligned_cols=84 Identities=29% Similarity=0.333 Sum_probs=45.8
Q ss_pred eEEEEEcCC-CCeEEEeecCCCcCccCcccCCCCcccccc-eec-ceeEEecchH----------HHHHhcCCCHHHHHH
Q 042840 96 AANVAVDNQ-GNLAAATSTGGMVNKMVGRIGDTPIIGSRT-YAN-KLCAVSATGK----------ALMEFKGLSLKEASA 162 (213)
Q Consensus 96 VGaVa~D~~-G~~AaatSTGG~~~K~pGRVGDspi~GaG~-yA~-~~~AvS~TG~----------~~~~~~g~~~~~A~~ 162 (213)
--.|+.|.+ |.+..+++|+-+. +|+=+ |+. ..+||++-.. .+|+ +|.+++++++
T Consensus 2 fSIvArdp~tg~~GvAvaS~~~a------------VGa~vp~~~~gvGavaTQ~~tnp~~g~~~L~ll~-~G~~a~~al~ 68 (190)
T PF06267_consen 2 FSIVARDPETGQFGVAVASSSPA------------VGARVPWARAGVGAVATQAYTNPRLGPRGLDLLE-AGLSAEEALA 68 (190)
T ss_dssp EEEEEE-TTT--EEEEEEESSS-------------HHHHHEEEETTTEEEEEESSS--HHHHHHHHHHH-TT--HHHHHH
T ss_pred eEEEEEcCCCCcEEEEEEecCcc------------cccccccccCCcCEEEecccCCHHHHHHHHHHHH-cCCCHHHHHH
Confidence 346888865 8888888876532 23221 333 3577776655 3344 8999999999
Q ss_pred HHHHhhcCCCceEEEEecCCcCEEeeecCC
Q 042840 163 YVVEECVPRGNVGLIVVSASGEVTMPFNTT 192 (213)
Q Consensus 163 ~~i~~~~~~~~~GvI~v~~~G~~~~~~nt~ 192 (213)
.++++.....+-=+.+||.+|+.+...-.+
T Consensus 69 ~l~~~D~~~~~RQ~~vvd~~G~~a~~TG~~ 98 (190)
T PF06267_consen 69 ALLAADPGREYRQLAVVDAQGRTAAFTGAE 98 (190)
T ss_dssp HHHHT-TTGGG-EEEEEETTS-EEEEE-TT
T ss_pred HHHhcCCCcccccEEEECCCCCeEEEECcc
Confidence 999764322333355678888755433333
No 15
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=66.86 E-value=8.2 Score=31.86 Aligned_cols=36 Identities=6% Similarity=0.096 Sum_probs=27.4
Q ss_pred ccHHHHHHHHhhhCCCeEEechhHH---------HHHHHcCCCcc
Q 042840 23 INAISLSRLVMEKNPHIYLAFDGAE---------AFAREQGVETV 58 (213)
Q Consensus 23 ~nPi~~Ar~v~e~~~h~~L~G~gA~---------~fA~~~G~~~~ 58 (213)
-.|-.++..+-+-.+|++|+|.++. +|++..|+|++
T Consensus 15 ~~p~~aa~lLk~AKRPvIivG~ga~~~~a~e~l~~laEklgiPVv 59 (162)
T TIGR00315 15 VSPKLVAMMIKRAKRPLLIVGPENLEDEEKELIVKFIEKFDLPVV 59 (162)
T ss_pred cCHHHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHHCCCEE
Confidence 3688888888887899999999873 45566666653
No 16
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=54.59 E-value=14 Score=28.54 Aligned_cols=31 Identities=23% Similarity=0.314 Sum_probs=23.5
Q ss_pred HHHHHHhhhCCCeEEechhHH---------HHHHHcCCCc
Q 042840 27 SLSRLVMEKNPHIYLAFDGAE---------AFAREQGVET 57 (213)
Q Consensus 27 ~~Ar~v~e~~~h~~L~G~gA~---------~fA~~~G~~~ 57 (213)
+++.++.+-..|++|+|.++. +||+..|+|.
T Consensus 3 ~~~~~L~~A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv 42 (137)
T PF00205_consen 3 EAADLLSSAKRPVILAGRGARRSGAAEELRELAEKLGIPV 42 (137)
T ss_dssp HHHHHHHH-SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEE
T ss_pred HHHHHHHhCCCEEEEEcCCcChhhHHHHHHHHHHHHCCCE
Confidence 356677777899999999987 7889999885
No 17
>PLN02689 Bifunctional isoaspartyl peptidase/L-asparaginase
Probab=52.44 E-value=13 Score=34.03 Aligned_cols=27 Identities=37% Similarity=0.442 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCeEEEeecCCCcCcc
Q 042840 94 LPAANVAVDNQGNLAAATSTGGMVNKM 120 (213)
Q Consensus 94 dTVGaVa~D~~G~~AaatSTGG~~~K~ 120 (213)
.+.|.|++|.+|+++++.+|.|+..-.
T Consensus 279 ~~gG~Iavd~~G~~~~~~nt~~m~~a~ 305 (318)
T PLN02689 279 GPAGLIAVSATGEVAMAFNTTGMFRAC 305 (318)
T ss_pred CceEEEEEcCCccEEEEeCCcCeEEEE
Confidence 678999999999999999999987543
No 18
>cd04702 ASRGL1_like ASRGL1_like domains, a subfamily of the L-Asparaginase type 2-like enzymes. The wider family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue. ASRGL1, or asparaginase-like 1, has been cloned from mammalian testis cDNA libraries. It has been identified as a sperm antigen that may induce the production of autoantibodies following obstruction of the male reproductive tract, e.g. vasectomy.
Probab=48.94 E-value=18 Score=32.20 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCeEEEeecCCCcCc
Q 042840 93 ELPAANVAVDNQGNLAAATSTGGMVNK 119 (213)
Q Consensus 93 ~dTVGaVa~D~~G~~AaatSTGG~~~K 119 (213)
.++.|.|++|.+|+++++.+|.++..-
T Consensus 223 ~g~gG~Iavd~~G~~~~a~nt~~m~~a 249 (261)
T cd04702 223 KGTGGAIVLDSSGEVGAAFNSKRMAWA 249 (261)
T ss_pred CCceEEEEEeCCCCEEEEeCCCCceEE
Confidence 457899999999999999999987653
No 19
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=48.87 E-value=33 Score=21.20 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=19.7
Q ss_pred CCCeEEEEEcCCCCeEEEeecCCC
Q 042840 93 ELPAANVAVDNQGNLAAATSTGGM 116 (213)
Q Consensus 93 ~dTVGaVa~D~~G~~AaatSTGG~ 116 (213)
.+..-.|++|.+||+=.+.+|.|.
T Consensus 12 ~~~~~~IavD~~GNiYv~G~T~~~ 35 (38)
T PF06739_consen 12 QDYGNGIAVDSNGNIYVTGYTNGN 35 (38)
T ss_pred ceeEEEEEECCCCCEEEEEeecCC
Confidence 467888999999999777777763
No 20
>COG1446 Asparaginase [Amino acid transport and metabolism]
Probab=45.04 E-value=23 Score=32.21 Aligned_cols=29 Identities=28% Similarity=0.483 Sum_probs=25.5
Q ss_pred CCceEEEEecCCcCEEeeecCCCceeEEE
Q 042840 171 RGNVGLIVVSASGEVTMPFNTTGKFRACA 199 (213)
Q Consensus 171 ~~~~GvI~v~~~G~~~~~~nt~~M~~a~~ 199 (213)
.++.|++++|.+|+++.+.+|-+|++-..
T Consensus 174 ~gTVGaVAlD~~G~lAaaTSTGG~~~k~~ 202 (307)
T COG1446 174 HGTVGAVALDADGNLAAATSTGGVFLKRP 202 (307)
T ss_pred CCceeEEEEeCCCcEEEEEccCccccCCC
Confidence 36999999999999999999999886543
No 21
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=44.35 E-value=23 Score=29.49 Aligned_cols=37 Identities=3% Similarity=0.067 Sum_probs=28.0
Q ss_pred CccHHHHHHHHhhhCCCeEEechhHH----------HHHHHcCCCcc
Q 042840 22 VINAISLSRLVMEKNPHIYLAFDGAE----------AFAREQGVETV 58 (213)
Q Consensus 22 v~nPi~~Ar~v~e~~~h~~L~G~gA~----------~fA~~~G~~~~ 58 (213)
+-.|-.++..+.+-.+|++|+|.++. +||+..++|..
T Consensus 21 ~~~p~~aa~lI~~AKrPlIivG~ga~~~~ea~e~l~elaEkl~iPVv 67 (171)
T PRK00945 21 IVSPKIAAMMIKKAKRPLLVVGSLLLDDEELLDRAVKIAKKANIPVA 67 (171)
T ss_pred ccCHHHHHHHHHhCCCcEEEECcCccccchHHHHHHHHHHHHCCCEE
Confidence 34688888888888899999998774 36666676653
No 22
>PF01112 Asparaginase_2: Asparaginase; InterPro: IPR000246 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Threonine peptidases are characterised by a threonine nucleophile at the N terminus of the mature enzyme. The threonine peptidases belong to clan PB or are unassigned, clan T-. The type example for this clan is the archaean proteasome beta component of Thermoplasma acidophilum. This group of sequences have a signature that places them in MEROPS peptidase family T2 (clan PB(T)). The glycosylasparaginases (3.5.1.26 from EC) are threonine peptidases. Also in this family is L-asparaginase (3.5.1.1 from EC), which catalyses the following reaction: L-asparagine + H2O = L-aspartate + NH3 Glycosylasparaginase catalyses: N4-(beta-N-acetyl-D-glucosaminyl)-L-asparagine + H(2)O = N-acetyl-beta-glucosaminylamine + L-aspartate cleaving the GlcNAc-Asn bond that links oligosaccharides to asparagine in N-linked glycoproteins. The enzyme is composed of two non-identical alpha/beta subunits joined by strong non-covalent forces and has one glycosylation site located in the alpha subunit [] and plays a major role in the degradation of glycoproteins.; GO: 0016787 hydrolase activity; PDB: 1APY_D 1APZ_C 2GEZ_E 2GL9_B 2GAC_D 2GAW_C 1AYY_A 1P4V_C 9GAF_A 1P4K_A ....
Probab=43.73 E-value=22 Score=32.38 Aligned_cols=34 Identities=26% Similarity=0.339 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCeEEEeecCCCcCccCcccCCC
Q 042840 94 LPAANVAVDNQGNLAAATSTGGMVNKMVGRIGDT 127 (213)
Q Consensus 94 dTVGaVa~D~~G~~AaatSTGG~~~K~pGRVGDs 127 (213)
.++|.|++|.+|+++.+.+|.+++.-....-|+.
T Consensus 275 ~~~GvIav~~~G~~~~~~n~~~m~~~~~~~~~~~ 308 (319)
T PF01112_consen 275 GTGGVIAVDKKGNIGIAFNSPGMFRYYAVQDGTV 308 (319)
T ss_dssp TSEEEEEEETTS-EEEEESSSCEEEEEEEECTCE
T ss_pred CceEEEEEcCCCCEEEEEecCcceeeEEecCCcc
Confidence 7999999999999999999999885333333433
No 23
>cd04513 Glycosylasparaginase Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoproteins. This enzyme is an amidase located inside lysosomes. Mutation of this gene in humans causes a genetic disorder known as aspartylglycosaminuria (AGU). The glycosylasparaginase precursor undergoes autoproteolysis through an N-O or N-S acyl rearrangement of the peptide bond, which leads to the cleavage of a peptide bond between an Asp and a Thr. This proteolysis step generates an exposed N-terminal catalytic threonine and activates the enzyme.
Probab=42.51 E-value=49 Score=29.46 Aligned_cols=29 Identities=21% Similarity=0.384 Sum_probs=25.7
Q ss_pred CCCceEEEEecCCcCEEeeecCCCceeEE
Q 042840 170 PRGNVGLIVVSASGEVTMPFNTTGKFRAC 198 (213)
Q Consensus 170 ~~~~~GvI~v~~~G~~~~~~nt~~M~~a~ 198 (213)
..++.|+|++|.+|++..+-+|.++.+=+
T Consensus 136 ~~dTVGaValD~~G~laaatSTGG~~~K~ 164 (263)
T cd04513 136 NHDTIGMIALDANGNIAAGTSTSGAAFKI 164 (263)
T ss_pred CCCCEEEEEEeCCCCEEEEECCCCccCcc
Confidence 45899999999999999999999987653
No 24
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=41.10 E-value=66 Score=25.30 Aligned_cols=47 Identities=23% Similarity=0.380 Sum_probs=33.7
Q ss_pred HHHHHHhhhCCCeEEech----------hHHHHHHHcCCCccCCCchhhHHHHHHHHHhc
Q 042840 27 SLSRLVMEKNPHIYLAFD----------GAEAFAREQGVETVDSSHFITIERLKQAKEAK 76 (213)
Q Consensus 27 ~~Ar~v~e~~~h~~L~G~----------gA~~fA~~~G~~~~~~~~~it~~~~~~~~~~~ 76 (213)
.-++.++++.|.++++|- -|.+|-+..+.++.- +-|++++++|.+..
T Consensus 52 eEle~~lee~~E~ivvGTG~~G~l~l~~ea~e~~r~k~~~vi~---~pT~EAikr~nel~ 108 (121)
T COG1504 52 EELEELLEEGPEVIVVGTGQSGMLELSEEAREFFRKKGCEVIE---LPTPEAIKRYNELR 108 (121)
T ss_pred HHHHHHHhcCCcEEEEecCceeEEEeCHHHHHHHHhcCCeEEE---eCCHHHHHHHHHHh
Confidence 347888998888888875 467888888866532 34788888877553
No 25
>PRK10226 isoaspartyl peptidase; Provisional
Probab=40.95 E-value=28 Score=31.77 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCeEEEeecCCCcCc
Q 042840 93 ELPAANVAVDNQGNLAAATSTGGMVNK 119 (213)
Q Consensus 93 ~dTVGaVa~D~~G~~AaatSTGG~~~K 119 (213)
.++.|.|++|.+|+++++.+|-|+..-
T Consensus 272 gg~gG~Iavd~~G~~~~~~nt~~M~~~ 298 (313)
T PRK10226 272 GGSGGLIAIDHEGNVALPFNTEGMYRA 298 (313)
T ss_pred CCceEEEEEcCCCCEEEEeCCcccceE
Confidence 346799999999999999999998644
No 26
>cd04512 Ntn_Asparaginase_2_like Ntn-hydrolase superfamily, L-Asparaginase type 2-like enzymes. This family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoprotein. Taspase1 catalyzes the cleavage of the Mix Lineage Leukemia (MLL) nuclear protein and transcription factor TFIIA. L-Asparaginase type 2 hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzymes of this family undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.
Probab=39.20 E-value=34 Score=30.24 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCeEEEeecCCCcC
Q 042840 93 ELPAANVAVDNQGNLAAATSTGGMVN 118 (213)
Q Consensus 93 ~dTVGaVa~D~~G~~AaatSTGG~~~ 118 (213)
..+.|.|++|.+|+++.+.+|.++.+
T Consensus 220 ~~~~G~Ia~d~~G~~~~a~~~~~m~~ 245 (248)
T cd04512 220 GGQGGVIAVDSKGEFGAAFNTAGMTV 245 (248)
T ss_pred CCeEEEEEEeCCCCEEEEECcCCceE
Confidence 46789999999999999999988654
No 27
>cd04701 Asparaginase_2 L-Asparaginase type 2. L-Asparaginase hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzyme undergoes an autoproteolytic cleavage into alpha and beta subunits to expose a threonine residue which becomes the N-terminal residue of the beta subunit. The threonine residue plays a central role in hydrolase activity. Some asparaginases can also hydrolyze L-glutamine and are termed glutaminase-asparaginase. This is a member of the Ntn-hydrolase superfamily.
Probab=37.76 E-value=32 Score=30.57 Aligned_cols=27 Identities=37% Similarity=0.469 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCeEEEeecCCCcCc
Q 042840 93 ELPAANVAVDNQGNLAAATSTGGMVNK 119 (213)
Q Consensus 93 ~dTVGaVa~D~~G~~AaatSTGG~~~K 119 (213)
..+.|.|++|.+|+++.+.+|.++.+-
T Consensus 228 ~~~~GiIaid~~G~~~~~~nt~~m~~a 254 (260)
T cd04701 228 GGDGGLIAVDARGNVAMPFNTGGMYRG 254 (260)
T ss_pred CCceEEEEEcCCccEEEEeCCCccEEE
Confidence 357899999999999999999988753
No 28
>PF01019 G_glu_transpept: Gamma-glutamyltranspeptidase; InterPro: IPR000101 Gamma-glutamyltranspeptidase (2.3.2.2 from EC) (GGT) [] catalyzes the transfer of the gamma-glutamyl moiety of glutathione to an acceptor that may be an amino acid, a peptide or water (forming glutamate). GGT plays a key role in the gamma-glutamyl cycle, a pathway for the synthesis and degradation of glutathione and drug and xenobiotic detoxification []. In prokaryotes and eukaryotes, it is an enzyme that consists of two polypeptide chains, a heavy and a light subunit, processed from a single chain precursor by an autocatalytic cleavage. The active site of GGT is known to be located in the light subunit. The sequences of mammalian and bacterial GGT show a number of regions of high similarity []. Pseudomonas cephalosporin acylases (3.5.1 from EC) that convert 7-beta-(4-carboxybutanamido)-cephalosporanic acid (GL-7ACA) into 7-aminocephalosporanic acid (7ACA) and glutaric acid are evolutionary related to GGT and also show some GGT activity []. Like GGT, these GL-7ACA acylases, are also composed of two subunits. As an autocatalytic peptidase GGT belongs to MEROPS peptidase family T3 (gamma-glutamyltransferase family, clan PB(T)). The active site residue for members of this family and family T1 is C-terminal to the autolytic cleavage site. The type example is gamma-glutamyltransferase 1 from Escherichia coli. ; GO: 0003840 gamma-glutamyltransferase activity; PDB: 2DBX_A 2Z8K_D 2Z8I_B 2DBU_D 2E0X_B 2DBW_B 2E0W_B 2DG5_A 2E0Y_C 2Z8J_C ....
Probab=37.41 E-value=32 Score=33.06 Aligned_cols=28 Identities=21% Similarity=0.161 Sum_probs=22.6
Q ss_pred cCCCCeEEEEEcCCCCeEEEeecCCCcC
Q 042840 91 EKELPAANVAVDNQGNLAAATSTGGMVN 118 (213)
Q Consensus 91 ~~~dTVGaVa~D~~G~~AaatSTGG~~~ 118 (213)
...||.-.+++|.+||+.+.|+|-+..|
T Consensus 323 ~~~~Tth~svvD~~Gn~Vs~t~Si~~~F 350 (510)
T PF01019_consen 323 DDGDTTHFSVVDKDGNAVSLTQSIGSPF 350 (510)
T ss_dssp -TTEEEEEEEEETTS-EEEEEEEESSTT
T ss_pred CCCCceeeeeECCCCCEEEeccccCCCC
Confidence 4579999999999999999999987633
No 29
>KOG2410 consensus Gamma-glutamyltransferase [Amino acid transport and metabolism]
Probab=34.80 E-value=1.1e+02 Score=30.37 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=21.8
Q ss_pred ccCCCCeEEEEEcCCCCeEEEeecC
Q 042840 90 VEKELPAANVAVDNQGNLAAATSTG 114 (213)
Q Consensus 90 ~~~~dTVGaVa~D~~G~~AaatSTG 114 (213)
+..|+|--..++|.+|+..+.|||=
T Consensus 385 ~~dhGTsHvsvid~dg~aVS~TSTI 409 (579)
T KOG2410|consen 385 PDDHGTSHVSVIDEDGNAVSLTSTI 409 (579)
T ss_pred CCCCCceeEEEEcCCCCEEEEEeec
Confidence 3568999999999999999999973
No 30
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=33.95 E-value=84 Score=24.69 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=48.5
Q ss_pred CEeEEeeCCCCccH---------HHHHHHHhhhCCCeEEe---chhHHHHHHHcCCCccCCCchhhHHHHHHHHHh
Q 042840 12 KCGAVSGFTTVINA---------ISLSRLVMEKNPHIYLA---FDGAEAFAREQGVETVDSSHFITIERLKQAKEA 75 (213)
Q Consensus 12 ~~GaV~~v~~v~nP---------i~~Ar~v~e~~~h~~L~---G~gA~~fA~~~G~~~~~~~~~it~~~~~~~~~~ 75 (213)
+-|-+-.++.+.|| +++|..+-++.-.++++ |+.|...-++.|+..+..+.-..++.++.|.+-
T Consensus 32 e~g~i~~vev~~np~~~~~~g~G~~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~~~V~e~i~~~~~g 107 (121)
T COG1433 32 EDGEIKNVEVIENPAASAEKGAGIRIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPGGTVEEAIKAFLEG 107 (121)
T ss_pred cCCcEEEEEEeecccccccCcchHHHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCCCCHHHHHHHHhcC
Confidence 34566778888888 56788888888888887 788999999999998755553346777777644
No 31
>cd04703 Asparaginase_2_like A subfamily of the L-Asparaginase type 2-like enzymes. The wider family, a member of the Ntn-hydrolase superfamily, includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.
Probab=33.68 E-value=36 Score=30.01 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCeEEEeecCCCcC
Q 042840 93 ELPAANVAVDNQGNLAAATSTGGMVN 118 (213)
Q Consensus 93 ~dTVGaVa~D~~G~~AaatSTGG~~~ 118 (213)
..+.|.|++|. |+++++.+|-++.+
T Consensus 219 ~~~~G~Iavd~-G~~~~~~~s~~m~~ 243 (246)
T cd04703 219 GVTAGVIAVDP-EEEGAAYSSAAMQT 243 (246)
T ss_pred CCceEEEEECC-CceEEEeCchhhhh
Confidence 46899999999 99999999988764
No 32
>PLN02937 Putative isoaspartyl peptidase/L-asparaginase
Probab=31.22 E-value=48 Score=31.43 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=24.1
Q ss_pred CceEEEEecCCcCEEeeecCCCceeE
Q 042840 172 GNVGLIVVSASGEVTMPFNTTGKFRA 197 (213)
Q Consensus 172 ~~~GvI~v~~~G~~~~~~nt~~M~~a 197 (213)
++.|+|++|.+|+++.+-+|.++.+=
T Consensus 228 dTVGaValD~~G~iAAaTSTGG~~~K 253 (414)
T PLN02937 228 DTVGVICVDSEGNIASGASSGGIAMK 253 (414)
T ss_pred CCEEEEEEeCCCCEEEEECCCccccC
Confidence 79999999999999999999998764
No 33
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=29.09 E-value=1.4e+02 Score=23.22 Aligned_cols=37 Identities=14% Similarity=0.156 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhc---CCCceEEEEecCCcCEEeeecCCCc
Q 042840 158 KEASAYVVEECV---PRGNVGLIVVSASGEVTMPFNTTGK 194 (213)
Q Consensus 158 ~~A~~~~i~~~~---~~~~~GvI~v~~~G~~~~~~nt~~M 194 (213)
-+++.++++..+ .+...|.++++.+|++..++|.+.-
T Consensus 4 ~~~a~~a~~~ay~PyS~~~vgAa~~~~~G~i~~G~n~e~~ 43 (127)
T TIGR01354 4 FKAAQEARKNAYAPYSNFKVGAALLTKDGRIFTGVNVENA 43 (127)
T ss_pred HHHHHHHHHhcCCCcCCCeEEEEEEeCCCCEEEEEeeccc
Confidence 355666665544 3578999999999999999998854
No 34
>TIGR00066 g_glut_trans gamma-glutamyltranspeptidase. Also called gamma-glutamyltranspeptidase (ggt). Some members of this family have antibiotic synthesis or resistance activities. In the case of a cephalosporin acylase from Pseudomonas sp., the enzyme was shown to retain some gamma-glutamyltranspeptidase activity. Other, more distantly related proteins have ggt-related activities and score below the trusted cutoff.
Probab=28.97 E-value=72 Score=30.84 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=21.7
Q ss_pred CCCCeEEEEEcCCCCeEEEeecCCC
Q 042840 92 KELPAANVAVDNQGNLAAATSTGGM 116 (213)
Q Consensus 92 ~~dTVGaVa~D~~G~~AaatSTGG~ 116 (213)
.+||.-..++|.+||.++.|||=+.
T Consensus 341 ~~~TTh~svvD~dGnaVs~t~Si~~ 365 (516)
T TIGR00066 341 GSQTTHFSVVDRDGNAVSLTTTINL 365 (516)
T ss_pred CCCCEEEEEEcCCCCEEEEEeccCC
Confidence 3699999999999999999999443
No 35
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=28.77 E-value=95 Score=21.81 Aligned_cols=51 Identities=14% Similarity=0.129 Sum_probs=36.3
Q ss_pred ccHHHHHHHHhhhCCCeEEe---chhHHHHHHHcCCCccCCCchhhHHHHHHHH
Q 042840 23 INAISLSRLVMEKNPHIYLA---FDGAEAFAREQGVETVDSSHFITIERLKQAK 73 (213)
Q Consensus 23 ~nPi~~Ar~v~e~~~h~~L~---G~gA~~fA~~~G~~~~~~~~~it~~~~~~~~ 73 (213)
.++..+++.+.++.-.++++ |+++.+.-++.|+.++.....--.+.++.|.
T Consensus 40 ~~~~~~~~~l~~~~v~~li~~~iG~~~~~~L~~~gI~v~~~~~~~i~~~l~~~~ 93 (94)
T PF02579_consen 40 GGGDKIAKFLAEEGVDVLICGGIGEGAFRALKEAGIKVYQGAGGDIEEALEAYL 93 (94)
T ss_dssp CHSTHHHHHHHHTTESEEEESCSCHHHHHHHHHTTSEEEESTSSBHHHHHHHHH
T ss_pred ccchhHHHHHHHcCCCEEEEeCCCHHHHHHHHHCCCEEEEcCCCCHHHHHHHHh
Confidence 66788899998877778887 7788888999999886532222245555543
No 36
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=25.86 E-value=31 Score=29.94 Aligned_cols=27 Identities=7% Similarity=0.086 Sum_probs=20.7
Q ss_pred CeEEechhHHHHHHHcCCCccCCCchh
Q 042840 38 HIYLAFDGAEAFAREQGVETVDSSHFI 64 (213)
Q Consensus 38 h~~L~G~gA~~fA~~~G~~~~~~~~~i 64 (213)
..++-.+.+.+||+++|+++.+-+.+|
T Consensus 181 G~ma~~~~l~~fA~~h~l~~isi~dli 207 (218)
T PRK00910 181 GTMAKTPEIIAFGKLHNMPVLTIEDMV 207 (218)
T ss_pred CCcCCHHHHHHHHHHcCCcEEEHHHHH
Confidence 446777889999999999876554444
No 37
>COG0405 Ggt Gamma-glutamyltransferase [Amino acid transport and metabolism]
Probab=24.70 E-value=2.1e+02 Score=28.24 Aligned_cols=27 Identities=22% Similarity=0.159 Sum_probs=23.2
Q ss_pred cCCCCeEEEEEcCCCCeEEEeecCCCc
Q 042840 91 EKELPAANVAVDNQGNLAAATSTGGMV 117 (213)
Q Consensus 91 ~~~dTVGaVa~D~~G~~AaatSTGG~~ 117 (213)
+.+||+-..++|.+||..+-|+|--..
T Consensus 352 e~~~Tth~svvD~~GnaVS~t~Si~~~ 378 (539)
T COG0405 352 ESGGTTHFSVVDKEGNAVSFTQSINLG 378 (539)
T ss_pred CCCCCEEEEEEcCCCCEEEEEEecccc
Confidence 348999999999999999999998433
No 38
>PRK09615 ggt gamma-glutamyltranspeptidase; Reviewed
Probab=24.63 E-value=90 Score=30.81 Aligned_cols=23 Identities=30% Similarity=0.228 Sum_probs=20.8
Q ss_pred CCCCeEEEEEcCCCCeEEEeecC
Q 042840 92 KELPAANVAVDNQGNLAAATSTG 114 (213)
Q Consensus 92 ~~dTVGaVa~D~~G~~AaatSTG 114 (213)
.+||.-..++|.+||.++.|+|=
T Consensus 389 ~~~TTh~sVvD~~GnaVS~T~Si 411 (581)
T PRK09615 389 SNQTTHFSVVDKDGNAVAVTYTL 411 (581)
T ss_pred CCCCEEEEEEcCCCCEEEEEccc
Confidence 36999999999999999999983
No 39
>PLN02198 glutathione gamma-glutamylcysteinyltransferase
Probab=24.12 E-value=96 Score=30.55 Aligned_cols=24 Identities=21% Similarity=0.109 Sum_probs=21.2
Q ss_pred CCCCeEEEEEcCCCCeEEEeecCC
Q 042840 92 KELPAANVAVDNQGNLAAATSTGG 115 (213)
Q Consensus 92 ~~dTVGaVa~D~~G~~AaatSTGG 115 (213)
.++|.-..++|.+||..+.|+|=+
T Consensus 366 ~~~TTh~sVvD~dGnaVS~T~Si~ 389 (573)
T PLN02198 366 DHGTSHLSIIDSERNAVSMTSTIN 389 (573)
T ss_pred CCCCEEEEEECCCCCEEEEeeccC
Confidence 369999999999999999999843
No 40
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=23.87 E-value=97 Score=24.32 Aligned_cols=50 Identities=26% Similarity=0.362 Sum_probs=29.2
Q ss_pred eeEEEeCCCCCEeEEeeCC------CCccH--------HHHHHHHhhhCCCeEEechhHHHHHH
Q 042840 2 EGCIMDGNSKKCGAVSGFT------TVINA--------ISLSRLVMEKNPHIYLAFDGAEAFAR 51 (213)
Q Consensus 2 DAsiMdG~~~~~GaV~~v~------~v~nP--------i~~Ar~v~e~~~h~~L~G~gA~~fA~ 51 (213)
|-+|+||+|.|--..--+. .|+|| +..-+..+++..++.+.=+|=|++|.
T Consensus 13 ~laIvD~kTkR~~~~~~~~~~~~~i~v~NPpG~It~el~~ai~~a~~~~~~~~I~V~GEEDL~~ 76 (121)
T PF04019_consen 13 DLAIVDGKTKREPVVEEVRKFYRVIEVKNPPGTITEELIEAIKKALESGKPVVIFVDGEEDLAV 76 (121)
T ss_pred CEEEEeCcccccCCcccccCCceEEEEECCCCcccHHHHHHHHHHHhCCCCEEEEEeChHHHHH
Confidence 5689999988776555444 56677 23333445444444444466666653
No 41
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=23.62 E-value=27 Score=20.95 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=11.8
Q ss_pred CCCeEEEeecCCCcCccC
Q 042840 104 QGNLAAATSTGGMVNKMV 121 (213)
Q Consensus 104 ~G~~AaatSTGG~~~K~p 121 (213)
+|.+-.+.||+|..-++.
T Consensus 2 ~g~LqI~ISTnG~sP~la 19 (30)
T PF14824_consen 2 RGPLQIAISTNGKSPRLA 19 (30)
T ss_dssp -TTEEEEEEESSS-HHHH
T ss_pred CCCeEEEEECCCCChHHH
Confidence 467888888888765543
No 42
>cd04514 Taspase1_like Taspase1_like domains; Taspase1 catalyzes the cleavage of the mix lineage leukemia (MLL) nuclear protein and transcription factor TFIIA. Taspase1 is a threonine aspartase, a member of the Ntn hydrolase superfamily and the type 2 asparaginase family. A threonine residue acts as the active site nucleophile in both endopeptidease and protease activities to cleave polypeptide substrates after an aspartate residue. The Taspase1 proenzyme undergoes autoproteolysis into alpha and beta subunits. The N-terminal residue of the beta subunit is a threonine which is the active catalytic residue. The active enzyme is a heterotetramer.
Probab=22.77 E-value=88 Score=28.45 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=24.4
Q ss_pred CCceEEEEecCCcCEEeeecCCCceeE
Q 042840 171 RGNVGLIVVSASGEVTMPFNTTGKFRA 197 (213)
Q Consensus 171 ~~~~GvI~v~~~G~~~~~~nt~~M~~a 197 (213)
.++.|++++|.+|+++.+.+|-++.+=
T Consensus 139 ~dTVGaValD~~G~~aaatSTGG~~~K 165 (303)
T cd04514 139 LDTVGAVCVDKEGNIAAGVSSGGIALK 165 (303)
T ss_pred CCCEEEEEEeCCCCEEEEECCCcccCC
Confidence 589999999999999999999988764
No 43
>PF11858 DUF3378: Domain of unknown function (DUF3378); InterPro: IPR024568 Ribonuclease HIII 3.1.26 from EC cleaves RNA from DNA-RNA hybrids. It catalyses endonucleolytic cleavage to 5'-phospho-monoesters. Two types of ribonuclease H in Bacillus subtilis, RNase HII (rnhB) and RNase HIII (rnhC), are both known experimentally and are quite similar to each other []. The only RNase H homologue in the Mycoplasmas resembles rnhC. Archaeal forms resemble HII more closely than HIII. This entry represents the uncharacterised N-terminal domain of bacterial RNase HIII.; PDB: 3ASM_A 2D0C_A 2D0B_A 2D0A_A.
Probab=22.64 E-value=54 Score=23.90 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=19.5
Q ss_pred CCCeEEechhHHHHHHHcCCCccC
Q 042840 36 NPHIYLAFDGAEAFAREQGVETVD 59 (213)
Q Consensus 36 ~~h~~L~G~gA~~fA~~~G~~~~~ 59 (213)
+-.+|+=|.+|+.+|.++|.+...
T Consensus 47 SGKV~FQG~~Ae~~A~~~~~~~~~ 70 (81)
T PF11858_consen 47 SGKVVFQGKNAEQEAAKWGYPPEK 70 (81)
T ss_dssp TSEEEEESTTHHHHHHTTSS-EEE
T ss_pred CCeEEEECCCHHHHHHHhCCCccc
Confidence 456899999999999999887543
No 44
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=21.46 E-value=1.6e+02 Score=16.08 Aligned_cols=19 Identities=26% Similarity=0.237 Sum_probs=15.3
Q ss_pred CCCeEEEEEcCCCCeEEEe
Q 042840 93 ELPAANVAVDNQGNLAAAT 111 (213)
Q Consensus 93 ~dTVGaVa~D~~G~~Aaat 111 (213)
...|-++..|.+|+|=.+|
T Consensus 4 ~n~I~~i~~D~~G~lWigT 22 (24)
T PF07494_consen 4 NNNIYSIYEDSDGNLWIGT 22 (24)
T ss_dssp SSCEEEEEE-TTSCEEEEE
T ss_pred CCeEEEEEEcCCcCEEEEe
Confidence 5689999999999987765
No 45
>PRK05578 cytidine deaminase; Validated
Probab=21.23 E-value=2.1e+02 Score=22.49 Aligned_cols=39 Identities=18% Similarity=0.163 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhc---CCCceEEEEecCCcCEEeeecCCCcee
Q 042840 158 KEASAYVVEECV---PRGNVGLIVVSASGEVTMPFNTTGKFR 196 (213)
Q Consensus 158 ~~A~~~~i~~~~---~~~~~GvI~v~~~G~~~~~~nt~~M~~ 196 (213)
-++++++++..+ .....|..+++.+|++..+.|-++..+
T Consensus 7 ~~~a~~~~~~ay~PyS~f~Vgaa~~~~~G~i~~G~nvEna~~ 48 (131)
T PRK05578 7 IEAAIEASEKAYAPYSKFPVGAALLTDDGRIYTGCNIENASY 48 (131)
T ss_pred HHHHHHHHHhcCCCcCCCceEEEEEeCCCCEEEEEEeeCccc
Confidence 345555555433 247899999999999999999987654
No 46
>COG0100 RpsK Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]
Probab=20.65 E-value=77 Score=25.35 Aligned_cols=28 Identities=29% Similarity=0.204 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCeEEEeecCCCcCccC
Q 042840 93 ELPAANVAVDNQGNLAAATSTGGMVNKMV 121 (213)
Q Consensus 93 ~dTVGaVa~D~~G~~AaatSTGG~~~K~p 121 (213)
-+|+ .-..|..||.-+..|+||+.+|-+
T Consensus 28 NNTi-vtitD~~Gn~i~wassG~~gfk~~ 55 (129)
T COG0100 28 NNTI-VTITDLTGNVIIWASSGGMGFKGS 55 (129)
T ss_pred CCcE-EEecCCCCCEEEEEecCCceEcCC
Confidence 4666 344599999999999999999843
Done!