BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042841
(110 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FVF|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVF|B Chain B, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVH|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
Length = 591
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 26/107 (24%)
Query: 17 PLLFQTMESIIKGRLRDVDYPFLGN----------------HFQQGRPQ-------DVII 53
P + ME+ ++ +L YPFL H+ + + Q +II
Sbjct: 482 PYMKDIMEAAVEDKLDTRHYPFLNGGGPRPSCQQPVSVRYGHWHKDKGQASYKSGPRLII 541
Query: 54 FIVGGTTYEESRSV--ALENANNSGIRFILGGSVILNSKRFLKDLEE 98
F+VGG +Y E RS + A N+ ILG + IL + L+DL +
Sbjct: 542 FVVGGISYSEMRSAYEVTQTAKNNW-EVILGSTHILTPEGLLRDLRK 587
>pdb|2PJX|A Chain A, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide
Complex
pdb|2PJX|B Chain B, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide
Complex
pdb|3PUK|A Chain A, Re-Refinement Of The Crystal Structure Of Munc18-3 And
Syntaxin4 N- Peptide Complex
pdb|3PUK|B Chain B, Re-Refinement Of The Crystal Structure Of Munc18-3 And
Syntaxin4 N- Peptide Complex
Length = 592
Score = 35.8 bits (81), Expect = 0.007, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 22/113 (19%)
Query: 17 PLLFQTMESIIKGRLRDVDYPFLG--------------------NHFQQGRPQD--VIIF 54
P + ME I RL ++P+ N+ + R +IIF
Sbjct: 476 PFIKDIMEDAIDNRLDSKEWPYCSRCPAVWNGSGAVSARQKPRTNYLELDRKNGSRLIIF 535
Query: 55 IVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAKSSS 107
++GG TY E R + + I+G + IL ++ L D++ ++ S
Sbjct: 536 VIGGITYSEMRCAYEVSQAHKSCEVIIGSTHILTPRKLLDDIKMLNKSKDKVS 588
>pdb|1EPU|A Chain A, X-Ray Crystal Structure Of Neuronal Sec1 From Squid
Length = 591
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 26/100 (26%)
Query: 24 ESIIKGRLRDVDYPFLGN----------------HFQQGRPQ-------DVIIFIVGGTT 60
E+ ++ +L YPFL H+ + + Q +IIF+VGG +
Sbjct: 489 EAAVEDKLDTRHYPFLNGGGPRPSCQQPVSVRYGHWHKDKGQASYKSGPRLIIFVVGGIS 548
Query: 61 YEESRSV--ALENANNSGIRFILGGSVILNSKRFLKDLEE 98
Y E RS + A N+ ILG + IL + L+DL +
Sbjct: 549 YSEXRSAYEVTQTAKNNW-EVILGSTHILTPEGLLRDLRK 587
>pdb|3PUJ|A Chain A, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide
Complex
pdb|3PUJ|B Chain B, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide
Complex
Length = 594
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 23/115 (20%)
Query: 17 PLLFQTMESIIKGRLRDVDYPFLGN----------------HFQQGR-PQD------VII 53
P++ ME I+ +L YP++ H+ + + P + +II
Sbjct: 480 PIIKDIMEDTIEDKLDTKHYPYISTRSSASFSTTAVSARYGHWHKNKAPGEYRSGPRLII 539
Query: 54 FIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAKSSSN 108
FI+GG + E R N ++G + IL ++ L L++ +T + S+
Sbjct: 540 FILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLKKLNKTDEEISS 594
>pdb|3C98|A Chain A, Revised Structure Of The Munc18a-Syntaxin1 Complex
Length = 606
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 23/115 (20%)
Query: 17 PLLFQTMESIIKGRLRDVDYPFLGN----------------HFQQGR-PQD------VII 53
P++ ME I+ +L YP++ H+ + + P + +II
Sbjct: 492 PIIKDIMEDTIEDKLDTKHYPYISTRSSASFSTTAVSARYGHWHKNKAPGEYRSGPRLII 551
Query: 54 FIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAKSSSN 108
FI+GG + E R N ++G + IL ++ L L++ +T + S+
Sbjct: 552 FILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLKKLNKTDEEISS 606
>pdb|1Z2N|X Chain X, Inositol 1,3,4-trisphosphate 5/6-kinase Complexed Mg2+/adp
pdb|1Z2O|X Chain X, Inositol 1,3,4-Trisphosphate 56-Kinase In Complex With
Mg2+ADPINS(1,3,4,6)P4
pdb|1Z2P|X Chain X, Inositol 1,3,4-Trisphosphate 56-Kinase In Complex With
Mg2+AMP- PcpINS(1,3,4)P3
Length = 324
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 31 LRDVDYPFLGNHFQQGRPQDVIIFIVGGTTYEESRSVALENANNSGIR 78
+ D+ +P L H+ + V +F +G T ++R+ +L N + GI+
Sbjct: 163 IDDIHFPCLCQHYINHNNKIVKVFCIGNTLKWQTRT-SLPNVHRCGIK 209
>pdb|1H9H|E Chain E, Complex Of Eeti-Ii With Porcine Trypsin
Length = 231
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 55 IVGGTTYEESRSVALENANNSGIRFILGGSVI 86
IVGG T + S+ + + NSG F GGS+I
Sbjct: 1 IVGGYTCSAANSIPYQVSLNSGSHFCSGGSLI 32
>pdb|4FL0|A Chain A, Crystal Structure Of Ald1 From Arabidopsis Thaliana
pdb|4FL0|B Chain B, Crystal Structure Of Ald1 From Arabidopsis Thaliana
Length = 456
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 5 LKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVI 52
++ V N Y +++ +L T+ S+ V+ P+L HF+ + DV
Sbjct: 345 IRSVNNYYKENRKILMDTLVSLGLKVYGGVNAPYLWVHFKGSKSWDVF 392
>pdb|1PQ3|A Chain A, Human Arginase Ii: Crystal Structure And Physiological
Role In Male And Female Sexual Arousal
pdb|1PQ3|B Chain B, Human Arginase Ii: Crystal Structure And Physiological
Role In Male And Female Sexual Arousal
pdb|1PQ3|C Chain C, Human Arginase Ii: Crystal Structure And Physiological
Role In Male And Female Sexual Arousal
pdb|1PQ3|D Chain D, Human Arginase Ii: Crystal Structure And Physiological
Role In Male And Female Sexual Arousal
pdb|1PQ3|E Chain E, Human Arginase Ii: Crystal Structure And Physiological
Role In Male And Female Sexual Arousal
pdb|1PQ3|F Chain F, Human Arginase Ii: Crystal Structure And Physiological
Role In Male And Female Sexual Arousal
Length = 306
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 16 QPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTTYEESRSVALENANNS 75
Q ++ +T + +I R R + F + F +VGG TY E +A E +N+
Sbjct: 205 QKVMERTFDLLIGKRQRPIHLSFDIDAFDPTLAPATGTPVVGGLTYREGMYIA-EEIHNT 263
Query: 76 GIRFILGGSVILNSKRFLKDLEEAQRTAKSSSNII 110
G+ L ++ + + EEA+ TA + ++I
Sbjct: 264 GLLSAL--DLVEVNPQLATSEEEAKTTANLAVDVI 296
>pdb|3UW2|A Chain A, X-Ray Crystal Structure Of
PhosphoglucomutasePHOSPHOMANNOMUTASE Family Protein
(Bth_i1489)from Burkholderia Thailandensis
Length = 485
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 16 QPLLFQTMESIIKGRLRDVDYPFLG 40
+PL+++T S++K +LR+ P G
Sbjct: 322 EPLMWKTGHSLVKAKLRETGAPLAG 346
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,061,391
Number of Sequences: 62578
Number of extensions: 114543
Number of successful extensions: 269
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 261
Number of HSP's gapped (non-prelim): 12
length of query: 110
length of database: 14,973,337
effective HSP length: 74
effective length of query: 36
effective length of database: 10,342,565
effective search space: 372332340
effective search space used: 372332340
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)