BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042841
(110 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O49048|VPS45_ARATH Vacuolar protein sorting-associated protein 45 homolog
OS=Arabidopsis thaliana GN=VPS45 PE=1 SV=2
Length = 569
Score = 201 bits (512), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 90/110 (81%), Positives = 105/110 (95%)
Query: 1 MARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTT 60
MARGLKGVENVYTQHQPLLFQTMESI +GRLRDVDYPF+G+HFQQGRPQ+V+IF+VGGTT
Sbjct: 460 MARGLKGVENVYTQHQPLLFQTMESITRGRLRDVDYPFVGDHFQQGRPQEVVIFMVGGTT 519
Query: 61 YEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAKSSSNII 110
YEESRSVAL+NA NSG+RFILGG+ +LNSKRFLKDLEEAQR ++S S+++
Sbjct: 520 YEESRSVALQNATNSGVRFILGGTAVLNSKRFLKDLEEAQRISRSGSHMV 569
>sp|Q9NRW7|VPS45_HUMAN Vacuolar protein sorting-associated protein 45 OS=Homo sapiens
GN=VPS45 PE=1 SV=1
Length = 570
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 80/115 (69%), Gaps = 10/115 (8%)
Query: 3 RGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTTYE 62
+GLKGVENVYTQHQP L +T++ +IKGRL++ YP+LG + RPQD+I+F++GG TYE
Sbjct: 454 KGLKGVENVYTQHQPFLHETLDHLIKGRLKENLYPYLGPSTLRDRPQDIIVFVIGGATYE 513
Query: 63 ESRSVALENANNSGIRFILGGSVILNSKRFLKDL----------EEAQRTAKSSS 107
E+ +V N G+R +LGG+ + N+K FL+++ E +Q T++S+S
Sbjct: 514 EALTVYNLNRTTPGVRIVLGGTTVHNTKSFLEEVLASGLHSRSKESSQVTSRSAS 568
>sp|P97390|VPS45_MOUSE Vacuolar protein sorting-associated protein 45 OS=Mus musculus
GN=Vps45 PE=1 SV=1
Length = 570
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 80/115 (69%), Gaps = 10/115 (8%)
Query: 3 RGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTTYE 62
+GLKGVENVYTQHQP L +T++ +IKGRL++ YP+LG + RPQD+I+FI+GG TYE
Sbjct: 454 KGLKGVENVYTQHQPFLHETLDHLIKGRLKENLYPYLGPSTLRDRPQDIIVFIIGGATYE 513
Query: 63 ESRSVALENANNSGIRFILGGSVILNSKRFLKDL----------EEAQRTAKSSS 107
E+ +V N G+R +LGG+ I N+K FL+++ E +Q T++S++
Sbjct: 514 EALTVYNLNRTTPGVRIVLGGTTIHNTKSFLEEVLASGLHSRSRESSQATSRSAN 568
>sp|O08700|VPS45_RAT Vacuolar protein sorting-associated protein 45 OS=Rattus norvegicus
GN=Vps45 PE=2 SV=1
Length = 570
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 80/115 (69%), Gaps = 10/115 (8%)
Query: 3 RGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTTYE 62
+GLKGVENVYTQHQP L +T++ +IKG+L++ YP+LG + RPQD+I+F++GG TYE
Sbjct: 454 KGLKGVENVYTQHQPFLHETLDHLIKGKLKENLYPYLGPSTLRDRPQDIIVFVIGGATYE 513
Query: 63 ESRSVALENANNSGIRFILGGSVILNSKRFLKDL----------EEAQRTAKSSS 107
E+ +V N G+R +LGG+ I N+K FL+++ E +Q T++S+S
Sbjct: 514 EALTVYNLNRTTPGVRIVLGGTTIHNTKSFLEEVLASGLHSRSRESSQATSRSAS 568
>sp|Q54GE3|VPS45_DICDI Vacuolar protein sorting-associated protein 45 OS=Dictyostelium
discoideum GN=vps45 PE=1 SV=1
Length = 563
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/109 (49%), Positives = 79/109 (72%), Gaps = 1/109 (0%)
Query: 1 MARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTT 60
+ RGL+GV N+YTQH+PLL ++SI+K +L++ YP+L + RPQDVIIF+VGG T
Sbjct: 452 VKRGLQGVSNIYTQHKPLLHDILDSILKNKLKETSYPYLSTTQSRERPQDVIIFMVGGIT 511
Query: 61 YEESRSVALENANNSGI-RFILGGSVILNSKRFLKDLEEAQRTAKSSSN 108
YEE+ +V N+ N+G+ R +LGG+ ILN ++FL+DL Q + SSS+
Sbjct: 512 YEEALTVYTFNSLNTGVCRVVLGGTSILNREQFLEDLSSTQISNPSSSS 560
>sp|Q09805|VPS45_SCHPO Vacuolar protein sorting-associated protein 45
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps45 PE=3 SV=1
Length = 558
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 64/98 (65%), Gaps = 4/98 (4%)
Query: 3 RGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQ----QGRPQDVIIFIVGG 58
+GL+GVENVY QH P L + +I+GRL++ +PFL + + +PQD+I+ IVGG
Sbjct: 453 KGLRGVENVYIQHNPFLKSILLDLIQGRLKETTHPFLNSETRAQTSNEKPQDIIVVIVGG 512
Query: 59 TTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDL 96
TYEE+ V+ NA G+R IL G+ ILNS ++ D+
Sbjct: 513 ATYEEAHFVSEFNATQPGVRIILAGTTILNSTAYIDDI 550
>sp|P38932|VPS45_YEAST Vacuolar protein sorting-associated protein 45 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS45 PE=1
SV=2
Length = 577
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 60/101 (59%), Gaps = 9/101 (8%)
Query: 9 ENVYTQHQP-----LLFQTMESIIKGRLRDVD---YPFLGNHFQQGRPQDVIIFIVGGTT 60
ENVY QH P L + ++ + R +++D + +GN + PQDVI+F++GG T
Sbjct: 477 ENVYMQHIPEISSLLTDLSKNALFRDRFKEIDTQGHRVIGNQQSKDIPQDVILFVIGGVT 536
Query: 61 YEESRSVALENAN-NSGIRFILGGSVILNSKRFLKDLEEAQ 100
YEE+R V N N+ +R +LGG+ IL++K ++ + A+
Sbjct: 537 YEEARLVHDFNGTMNNRMRVVLGGTSILSTKEYMDSIRSAK 577
>sp|O18637|SLY1_DROVI Protein sly1 homolog OS=Drosophila virilis GN=Slh PE=3 SV=1
Length = 656
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 49 QDVIIFIVGGTTYEESRS----VALENANNSGIRFILGGSVILNSKRFLKDL 96
QD ++F+VGG Y E ++ + + +N R I GGS + N+++FLK+L
Sbjct: 592 QDAVVFMVGGGNYIEYQNLVDFIKQKQTSNVHRRIIYGGSTLTNARQFLKEL 643
>sp|Q24179|SLY1_DROME Protein sly1 homolog OS=Drosophila melanogaster GN=Slh PE=2 SV=3
Length = 657
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 49 QDVIIFIVGGTTYEESRS----VALENANNSGIRFILGGSVILNSKRFLKDL 96
QD ++F+VGG Y E ++ + + +N R I G S + N+++FLK+L
Sbjct: 592 QDAVVFMVGGGNYIEYQNLVDFIKQKQTSNVQRRIIYGASTLTNARQFLKEL 643
>sp|Q60770|STXB3_MOUSE Syntaxin-binding protein 3 OS=Mus musculus GN=Stxbp3 PE=1 SV=1
Length = 592
Score = 35.8 bits (81), Expect = 0.084, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 22/113 (19%)
Query: 17 PLLFQTMESIIKGRLRDVDYPFLG--------------------NHFQQGRPQD--VIIF 54
P + ME I RL ++P+ N+ + R +IIF
Sbjct: 476 PFIKDIMEDAIDNRLDSKEWPYCSRCPAVWNGSGAVSARQKPRTNYLELDRKNGSRLIIF 535
Query: 55 IVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAKSSS 107
++GG TY E R + + I+G + IL ++ L D++ ++ S
Sbjct: 536 VIGGITYSEMRCAYEVSQAHKSCEVIIGSTHILTPRKLLDDIKMLNKSKDKVS 588
>sp|P34815|UNC18_CAEEL Putative acetylcholine regulator unc-18 OS=Caenorhabditis elegans
GN=unc-18 PE=2 SV=3
Length = 673
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 26/119 (21%)
Query: 9 ENVYTQHQ--PLLFQTMESIIKGRLRDVDYPFL-GNHFQQG---------------RPQD 50
E VY + P++ +E I RL +PFL G QG R Q
Sbjct: 551 EQVYQSSRWVPVIKDIIEDAIDERLDTKHFPFLAGRQVNQGYRAPASARYGQWHKERGQQ 610
Query: 51 --------VIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQR 101
+II+I+GG T+ E R+ A ++G I+ +FL +L + +
Sbjct: 611 SNYRSGPRLIIYIIGGVTFSEMRACYEVTAARKPWEVVIGSDRIITPDKFLTNLRDLNK 669
>sp|O00186|STXB3_HUMAN Syntaxin-binding protein 3 OS=Homo sapiens GN=STXBP3 PE=1 SV=2
Length = 592
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 21/102 (20%)
Query: 17 PLLFQTMESIIKGRLRDVDYPFL----------GNHFQQGRPQ-----------DVIIFI 55
P + ME I RL ++P+ G + +P+ +I+F+
Sbjct: 476 PFIKDIMEDAIDNRLDSKEWPYCSQCPAVWNGSGAVSARQKPRANYLEDRKNGSKLIVFV 535
Query: 56 VGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLE 97
+GG TY E R + + I+G + +L K+ L D++
Sbjct: 536 IGGITYSEVRCAYEVSQAHKSCEVIIGSTHVLTPKKLLDDIK 577
>sp|Q851W1|SLY1_ORYSJ SEC1 family transport protein SLY1 OS=Oryza sativa subsp. japonica
GN=SLY1 PE=2 SV=1
Length = 623
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 12/112 (10%)
Query: 4 GLKGVENVYTQHQPLL-FQTMESIIKGR---------LRDVDYPFLGNHFQ-QGRPQDVI 52
+ GV N+ + + L + +E++++G+ L D P G Q +G ++ I
Sbjct: 500 AMTGVRNLLSDGKQLAATRAVEALMEGKPNPEVDNYLLFDPRAPKSGTAGQFRGPFREAI 559
Query: 53 IFIVGGTTYEESRSVA-LENANNSGIRFILGGSVILNSKRFLKDLEEAQRTA 103
+F++GG Y E RS+ L + + + I G + ILN F++ L E + A
Sbjct: 560 VFMIGGGNYIEYRSLTELTQRSQTTKQVIYGATEILNGVEFIQQLSELGQKA 611
>sp|Q64324|STXB2_MOUSE Syntaxin-binding protein 2 OS=Mus musculus GN=Stxbp2 PE=2 SV=1
Length = 593
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 26/106 (24%)
Query: 17 PLLFQTMESIIKGRLRDVDYPFLGN----------------HFQQGR--------PQDVI 52
P++ ME +++ RL +PF+ + H+ + + P+ +I
Sbjct: 477 PVIKDVMEDVVEDRLDRKLWPFVSDPAPVPSSQAAVSARFGHWHKNKAGVEARAGPR-LI 535
Query: 53 IFIVGGTTYEESRSV-ALENANNSGIRFILGGSVILNSKRFLKDLE 97
++IVGG E R+ + A ++G S IL RFL DL+
Sbjct: 536 VYIVGGVAMSEMRAAYEVTRATEGKWEVLIGSSHILTPTRFLDDLK 581
>sp|Q8SS97|SLY1_ENCCU SEC1 family transport protein SLY1 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=SLY1 PE=1 SV=1
Length = 521
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 51 VIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLE 97
+++F VGG TY E +++ L G+ I G + ILN++ FL+ +E
Sbjct: 470 LVVFGVGGGTYTELKTLKLLE-ERIGVPIIYGSTEILNAREFLRQVE 515
>sp|Q62991|SCFD1_RAT Sec1 family domain-containing protein 1 OS=Rattus norvegicus
GN=Scfd1 PE=1 SV=1
Length = 637
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 49 QDVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEE 98
Q+ I+F+VGG Y E +++ G + G S I N+ +F+K L +
Sbjct: 584 QEAIVFVVGGGNYIEYQNLVDYIKGKQGKHILYGCSEIFNATQFIKQLSQ 633
>sp|B4SEU9|DAPB_PELPB 4-hydroxy-tetrahydrodipicolinate reductase OS=Pelodictyon
phaeoclathratiforme (strain DSM 5477 / BU-1) GN=dapB
PE=3 SV=1
Length = 248
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 7 GVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTTYEESRS 66
V ++ T P LFQ ++II +R+ + L + G P +VG T +++ R
Sbjct: 29 AVLDINTAITPDLFQGSDAIIDFTVREAFFANLPAMLESGVP-----IVVGTTGWDDLRD 83
Query: 67 VALENANNSGIRFILGGSVILNSKRFLKDLEEAQR 101
+++G + + L FL+ + EA R
Sbjct: 84 EIEVKVSDAGASLLYSANFSLGVNIFLRTVREAAR 118
>sp|Q8BRF7|SCFD1_MOUSE Sec1 family domain-containing protein 1 OS=Mus musculus GN=Scfd1
PE=2 SV=1
Length = 639
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 49 QDVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEE 98
Q+ I+F+VGG Y E +++ G + G S I N+ +F+K L +
Sbjct: 586 QEAIVFVVGGGNYIEYQNLVDYIKAKQGKHILYGCSEIFNATQFIKQLSQ 635
>sp|P61765|STXB1_RAT Syntaxin-binding protein 1 OS=Rattus norvegicus GN=Stxbp1 PE=1 SV=1
Length = 594
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 23/115 (20%)
Query: 17 PLLFQTMESIIKGRLRDVDYPFLGN----------------HFQQGR-PQD------VII 53
P++ ME I+ +L YP++ H+ + + P + +II
Sbjct: 480 PIIKDIMEDTIEDKLDTKHYPYISTRSSASFSTTAVSARYGHWHKNKAPGEYRSGPRLII 539
Query: 54 FIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAKSSSN 108
FI+GG + E R N ++G + IL ++ L L++ +T + S+
Sbjct: 540 FILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLKKLNKTDEEISS 594
>sp|Q5R6D2|STXB1_PONAB Syntaxin-binding protein 1 OS=Pongo abelii GN=STXBP1 PE=2 SV=1
Length = 594
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 23/115 (20%)
Query: 17 PLLFQTMESIIKGRLRDVDYPFLGN----------------HFQQGR-PQD------VII 53
P++ ME I+ +L YP++ H+ + + P + +II
Sbjct: 480 PIIKDIMEDTIEDKLDTKHYPYISTRSSASFSTTAVSARYGHWHKNKAPGEYRSGPRLII 539
Query: 54 FIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAKSSSN 108
FI+GG + E R N ++G + IL ++ L L++ +T + S+
Sbjct: 540 FILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLKKLNKTDEEISS 594
>sp|O08599|STXB1_MOUSE Syntaxin-binding protein 1 OS=Mus musculus GN=Stxbp1 PE=1 SV=2
Length = 594
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 23/115 (20%)
Query: 17 PLLFQTMESIIKGRLRDVDYPFLGN----------------HFQQGR-PQD------VII 53
P++ ME I+ +L YP++ H+ + + P + +II
Sbjct: 480 PIIKDIMEDTIEDKLDTKHYPYISTRSSASFSTTAVSARYGHWHKNKAPGEYRSGPRLII 539
Query: 54 FIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAKSSSN 108
FI+GG + E R N ++G + IL ++ L L++ +T + S+
Sbjct: 540 FILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLKKLNKTDEEISS 594
>sp|P61764|STXB1_HUMAN Syntaxin-binding protein 1 OS=Homo sapiens GN=STXBP1 PE=1 SV=1
Length = 594
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 23/115 (20%)
Query: 17 PLLFQTMESIIKGRLRDVDYPFLGN----------------HFQQGR-PQD------VII 53
P++ ME I+ +L YP++ H+ + + P + +II
Sbjct: 480 PIIKDIMEDTIEDKLDTKHYPYISTRSSASFSTTAVSARYGHWHKNKAPGEYRSGPRLII 539
Query: 54 FIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAKSSSN 108
FI+GG + E R N ++G + IL ++ L L++ +T + S+
Sbjct: 540 FILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLKKLNKTDEEISS 594
>sp|P61763|STXB1_BOVIN Syntaxin-binding protein 1 OS=Bos taurus GN=STXBP1 PE=1 SV=1
Length = 594
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 23/115 (20%)
Query: 17 PLLFQTMESIIKGRLRDVDYPFLGN----------------HFQQGR-PQD------VII 53
P++ ME I+ +L YP++ H+ + + P + +II
Sbjct: 480 PIIKDIMEDTIEDKLDTKHYPYISTRSSASFSTTAVSARYGHWHKNKAPGEYRSGPRLII 539
Query: 54 FIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAKSSSN 108
FI+GG + E R N ++G + IL ++ L L++ +T + S+
Sbjct: 540 FILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLKKLNKTDEEISS 594
>sp|Q6R748|STXB1_CHICK Syntaxin-binding protein 1 OS=Gallus gallus GN=STXBP1 PE=2 SV=1
Length = 594
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 23/115 (20%)
Query: 17 PLLFQTMESIIKGRLRDVDYPFLGN----------------HFQQGR-PQD------VII 53
P++ ME I+ +L YP++ H+ + + P + +II
Sbjct: 480 PIIKDIMEDTIEDKLDTKHYPYISTRSSASFSTTAVSARYGHWHKNKAPGEYRSGPRLII 539
Query: 54 FIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAKSSSN 108
FI+GG + E R N ++G + IL ++ L L++ +T + S+
Sbjct: 540 FILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLKKLNKTDEEISS 594
>sp|Q28288|STXB2_CANFA Syntaxin-binding protein 2 OS=Canis familiaris GN=STXBP2 PE=2 SV=1
Length = 593
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 26/106 (24%)
Query: 17 PLLFQTMESIIKGRLRDVDYPFLGN----------------HFQQGR--------PQDVI 52
P++ ME ++ RL +PF+ + H+ + + P+ +I
Sbjct: 477 PVIKDVMEDAVEDRLDRKLWPFVSDPAPTSSSQAAVSARFGHWHKNKAGVEMRAGPR-LI 535
Query: 53 IFIVGGTTYEESRSV-ALENANNSGIRFILGGSVILNSKRFLKDLE 97
I+++GG E R+ + A + ++G S IL RFL DL+
Sbjct: 536 IYVMGGVAMSEMRAAYEVTRATDGKWEVLIGSSHILTPTRFLDDLK 581
>sp|Q8WVM8|SCFD1_HUMAN Sec1 family domain-containing protein 1 OS=Homo sapiens GN=SCFD1
PE=1 SV=4
Length = 642
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 49 QDVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEE 98
Q+ I+F+VGG Y E +++ G + G S + N+ +F+K L +
Sbjct: 589 QEAIVFVVGGGNYIEYQNLVDYIKGKQGKHILYGCSELFNATQFIKQLSQ 638
>sp|Q15833|STXB2_HUMAN Syntaxin-binding protein 2 OS=Homo sapiens GN=STXBP2 PE=1 SV=2
Length = 593
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 26/106 (24%)
Query: 17 PLLFQTMESIIKGRLRDVDYPFLGN----------------HFQQGR--------PQDVI 52
P++ ME ++ RL +PF+ + H+ + + P+ +I
Sbjct: 477 PVIKDVMEDAVEDRLDRNLWPFVSDPAPTASSQAAVSARFGHWHKNKAGIEARAGPR-LI 535
Query: 53 IFIVGGTTYEESRSV-ALENANNSGIRFILGGSVILNSKRFLKDLE 97
++++GG E R+ + A ++G S IL RFL DL+
Sbjct: 536 VYVMGGVAMSEMRAAYEVTRATEGKWEVLIGSSHILTPTRFLDDLK 581
>sp|Q54QC8|SEC1_DICDI Protein transport protein sec1 OS=Dictyostelium discoideum GN=sec1
PE=3 SV=1
Length = 598
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 33/116 (28%)
Query: 13 TQHQPLLFQTMESIIKGRLRDVDYPF------------------LGNHFQQGRPQD---- 50
+++ P++ E+II L D+PF L +Q R D
Sbjct: 478 SRYVPVVKDIAENIINETLPSTDFPFVKEEPIARATNAPVSKVSLKGKSKQPRWADPNVQ 537
Query: 51 ----------VIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDL 96
+IIF++GG T+ E RS+ E +++ +G + IL K+++ L
Sbjct: 538 VEETKYSGSKLIIFVIGGMTFSEMRSI-YELSSHYKKNIYIGSTNILLPKKYIDQL 592
>sp|Q3SSP4|SYV_NITWN Valine--tRNA ligase OS=Nitrobacter winogradskyi (strain Nb-255 /
ATCC 25391) GN=valS PE=3 SV=1
Length = 952
Score = 29.3 bits (64), Expect = 7.7, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 27 IKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTTYEES----RSVALENANNSGIRFILG 82
+KG L + YP G F P D +IV TT E+ +VA+ + N+ + +++G
Sbjct: 196 VKGSLWHLRYPIEGKAFD---PSDPSTYIVVATTRPETMLGDTAVAV-HPENAKLEYLIG 251
Query: 83 GSVIL 87
+V+L
Sbjct: 252 SNVVL 256
>sp|A7H6G8|RIMO_ANADF Ribosomal protein S12 methylthiotransferase RimO
OS=Anaeromyxobacter sp. (strain Fw109-5) GN=rimO PE=3
SV=1
Length = 470
Score = 28.9 bits (63), Expect = 9.8, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 9 ENVYTQHQ-PLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTTY 61
+ + +HQ ++ + +E +++GR + ++ G H QQ D I ++ G Y
Sbjct: 366 QEISREHQRAMVGRRLEVLVEGRAEETEHLLAGRHAQQAPEIDGITYVNDGVAY 419
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,287,642
Number of Sequences: 539616
Number of extensions: 1518578
Number of successful extensions: 3848
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 3819
Number of HSP's gapped (non-prelim): 39
length of query: 110
length of database: 191,569,459
effective HSP length: 78
effective length of query: 32
effective length of database: 149,479,411
effective search space: 4783341152
effective search space used: 4783341152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)