Query 042841
Match_columns 110
No_of_seqs 130 out of 713
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 10:06:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042841.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042841hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1299 Vacuolar sorting prote 99.9 3.4E-25 7.3E-30 181.5 8.6 99 1-99 450-548 (549)
2 KOG1300 Vesicle trafficking pr 99.9 6.7E-24 1.4E-28 177.1 9.8 99 8-107 468-592 (593)
3 PF00995 Sec1: Sec1 family; I 99.9 6.8E-22 1.5E-26 162.4 8.8 91 5-96 449-564 (564)
4 KOG1301 Vesicle trafficking pr 99.7 1.4E-17 2.9E-22 138.5 6.8 101 5-105 506-620 (621)
5 COG5158 SEC1 Proteins involved 99.6 5.5E-16 1.2E-20 130.6 7.0 99 4-102 470-580 (582)
6 KOG1302 Vacuolar sorting prote 99.4 1.6E-12 3.5E-17 109.5 8.1 90 6-96 491-599 (600)
7 PRK05581 ribulose-phosphate 3- 83.4 2.5 5.4E-05 30.8 4.5 44 51-99 171-214 (220)
8 cd00564 TMP_TenI Thiamine mono 80.3 3.4 7.4E-05 29.0 4.2 45 50-99 150-194 (196)
9 PF12327 FtsZ_C: FtsZ family, 79.5 15 0.00032 24.1 7.1 58 18-84 15-76 (95)
10 PLN02334 ribulose-phosphate 3- 78.2 3.8 8.3E-05 30.6 4.1 45 51-100 175-219 (229)
11 PRK08883 ribulose-phosphate 3- 77.9 4.8 0.0001 30.4 4.5 46 50-100 167-212 (220)
12 PRK00043 thiE thiamine-phospha 75.4 5.2 0.00011 28.8 4.0 46 50-100 160-205 (212)
13 TIGR01163 rpe ribulose-phospha 70.5 8.1 0.00018 27.7 4.1 44 51-99 166-209 (210)
14 PRK15383 type III secretion sy 68.1 4.5 9.7E-05 32.1 2.3 81 4-84 31-124 (335)
15 cd00429 RPE Ribulose-5-phospha 66.4 11 0.00023 27.0 3.9 44 51-99 167-210 (211)
16 PTZ00170 D-ribulose-5-phosphat 65.6 10 0.00023 28.5 3.9 46 50-100 173-218 (228)
17 TIGR03128 RuMP_HxlA 3-hexulose 65.4 15 0.00033 26.5 4.6 45 50-99 158-202 (206)
18 TIGR00693 thiE thiamine-phosph 63.7 11 0.00025 26.9 3.7 42 51-97 153-194 (196)
19 cd04726 KGPDC_HPS 3-Keto-L-gul 63.4 14 0.0003 26.4 4.1 43 50-97 158-200 (202)
20 PRK08745 ribulose-phosphate 3- 61.5 22 0.00047 27.0 5.0 45 50-99 171-215 (223)
21 PRK10039 hypothetical protein; 61.2 22 0.00048 25.1 4.6 42 56-97 80-125 (127)
22 TIGR01501 MthylAspMutase methy 60.7 56 0.0012 23.0 7.1 22 75-98 109-130 (134)
23 PRK15382 non-LEE encoded effec 60.7 6.9 0.00015 31.0 2.2 81 4-84 25-118 (326)
24 PRK15384 type III secretion sy 60.4 7.5 0.00016 30.9 2.3 81 4-84 30-123 (336)
25 PRK08091 ribulose-phosphate 3- 55.6 28 0.0006 26.7 4.7 46 50-100 179-224 (228)
26 PRK00278 trpC indole-3-glycero 49.7 29 0.00064 26.6 4.1 45 50-99 211-256 (260)
27 PRK08005 epimerase; Validated 49.6 35 0.00077 25.7 4.4 44 52-100 165-208 (210)
28 PRK01130 N-acetylmannosamine-6 48.9 57 0.0012 23.9 5.4 45 50-99 173-218 (221)
29 PRK13307 bifunctional formalde 47.6 31 0.00067 28.5 4.1 47 49-100 329-375 (391)
30 PF06122 TraH: Conjugative rel 45.3 17 0.00036 29.4 2.2 27 75-101 56-82 (361)
31 smart00612 Kelch Kelch domain. 44.4 14 0.00031 19.4 1.2 8 53-60 2-9 (47)
32 PF01344 Kelch_1: Kelch motif; 43.1 8.3 0.00018 21.0 0.1 9 53-61 14-22 (47)
33 TIGR01861 ANFD nitrogenase iro 43.0 29 0.00063 29.5 3.3 19 50-68 230-248 (513)
34 cd01844 SGNH_hydrolase_like_6 41.9 54 0.0012 22.8 4.1 50 50-99 33-83 (177)
35 PF09176 Mpt_N: Methylene-tetr 41.4 23 0.0005 23.2 2.0 46 54-99 16-67 (81)
36 PF02310 B12-binding: B12 bind 40.5 99 0.0021 19.9 5.5 39 57-95 61-101 (121)
37 PRK13306 ulaD 3-keto-L-gulonat 39.1 45 0.00097 24.9 3.5 44 53-101 166-209 (216)
38 cd00331 IGPS Indole-3-glycerol 39.0 37 0.00081 24.8 3.1 45 49-98 171-216 (217)
39 PRK14057 epimerase; Provisiona 38.3 68 0.0015 25.0 4.5 46 49-99 192-237 (254)
40 PRK07695 transcriptional regul 38.1 65 0.0014 23.3 4.2 40 50-94 149-188 (201)
41 cd04729 NanE N-acetylmannosami 38.0 60 0.0013 23.8 4.0 41 50-95 177-218 (219)
42 PRK08945 putative oxoacyl-(acy 36.4 1.3E+02 0.0028 21.7 5.6 44 52-97 14-57 (247)
43 PRK07890 short chain dehydroge 34.7 1.3E+02 0.0028 21.7 5.3 31 52-84 7-37 (258)
44 PF10138 vWA-TerF-like: vWA fo 33.9 2.1E+02 0.0045 21.6 6.9 47 49-100 105-156 (200)
45 cd04727 pdxS PdxS is a subunit 33.8 1.4E+02 0.0031 23.8 5.7 43 51-98 197-243 (283)
46 cd06259 YdcF-like YdcF-like. Y 33.4 95 0.002 21.0 4.2 48 52-99 37-90 (150)
47 PRK04180 pyridoxal biosynthesi 32.9 1.6E+02 0.0034 23.7 5.8 44 51-99 206-253 (293)
48 cd06565 GH20_GcnA-like Glycosy 32.7 1.5E+02 0.0032 23.2 5.6 55 18-81 18-78 (301)
49 TIGR01957 nuoB_fam NADH-quinon 32.0 1.1E+02 0.0024 21.8 4.5 24 50-73 58-81 (145)
50 PRK07035 short chain dehydroge 31.6 1.9E+02 0.0042 20.7 5.9 43 52-96 10-52 (252)
51 cd02191 FtsZ FtsZ is a GTPase 31.6 2.6E+02 0.0056 22.0 7.9 57 18-82 224-284 (303)
52 PRK06512 thiamine-phosphate py 31.4 75 0.0016 23.8 3.7 42 51-97 165-206 (221)
53 PTZ00348 tyrosyl-tRNA syntheta 30.6 95 0.0021 27.6 4.6 54 48-101 407-477 (682)
54 PF10087 DUF2325: Uncharacteri 30.0 1.5E+02 0.0033 18.9 5.0 49 48-99 48-96 (97)
55 COG2242 CobL Precorrin-6B meth 29.6 1.7E+02 0.0036 21.9 5.2 49 52-101 105-153 (187)
56 TIGR00696 wecB_tagA_cpsF bacte 29.4 2.2E+02 0.0048 20.6 6.4 28 53-80 51-78 (177)
57 PRK09722 allulose-6-phosphate 28.9 1.4E+02 0.003 22.8 4.7 45 49-98 168-217 (229)
58 PRK07775 short chain dehydroge 28.3 2E+02 0.0043 21.3 5.5 32 52-85 12-43 (274)
59 PRK03868 glucose-6-phosphate i 28.2 1.4E+02 0.0031 24.7 5.0 46 52-99 60-108 (410)
60 PRK05867 short chain dehydroge 27.8 2.3E+02 0.0049 20.5 5.7 32 52-85 11-42 (253)
61 PRK07028 bifunctional hexulose 27.7 1.2E+02 0.0025 24.8 4.5 44 51-99 163-206 (430)
62 COG0036 Rpe Pentose-5-phosphat 27.6 2.1E+02 0.0046 22.0 5.5 47 50-101 169-215 (220)
63 PF06258 Mito_fiss_Elm1: Mitoc 27.6 2.3E+02 0.0051 22.4 6.0 52 48-101 145-206 (311)
64 PRK02615 thiamine-phosphate py 27.0 1.2E+02 0.0027 24.6 4.4 33 51-88 295-327 (347)
65 PRK13723 conjugal transfer pil 26.8 47 0.001 28.1 2.0 27 75-101 82-108 (451)
66 TIGR02700 flavo_MJ0208 archaeo 26.4 1.4E+02 0.0031 22.4 4.4 50 50-99 1-56 (234)
67 PRK03512 thiamine-phosphate py 26.3 1.3E+02 0.0027 22.4 4.1 44 51-99 159-202 (211)
68 KOG0333 U5 snRNP-like RNA heli 25.5 1.1E+02 0.0025 26.9 4.1 39 51-99 352-390 (673)
69 KOG0097 GTPase Rab14, small G 25.3 98 0.0021 22.8 3.2 22 49-70 115-145 (215)
70 PF01212 Beta_elim_lyase: Beta 25.2 57 0.0012 25.5 2.1 34 56-90 137-172 (290)
71 PRK12384 sorbitol-6-phosphate 25.2 2.7E+02 0.0058 20.1 5.9 33 52-86 4-36 (259)
72 COG1237 Metal-dependent hydrol 25.1 1.2E+02 0.0026 23.9 3.9 38 54-91 169-208 (259)
73 PF13964 Kelch_6: Kelch motif 24.9 51 0.0011 18.2 1.4 10 53-62 14-23 (50)
74 PF02581 TMP-TENI: Thiamine mo 24.1 43 0.00093 23.9 1.2 20 51-70 150-169 (180)
75 PRK09444 pntB pyridine nucleot 23.8 80 0.0017 26.9 2.8 41 51-91 356-398 (462)
76 PF02401 LYTB: LytB protein; 23.4 2.6E+02 0.0055 22.1 5.5 37 52-88 212-248 (281)
77 PRK13813 orotidine 5'-phosphat 23.0 93 0.002 22.6 2.8 47 50-100 163-209 (215)
78 PRK00103 rRNA large subunit me 22.9 52 0.0011 23.6 1.4 11 49-59 97-107 (157)
79 COG1901 Uncharacterized conser 22.8 1.3E+02 0.0029 22.7 3.6 37 52-92 146-185 (197)
80 PF01408 GFO_IDH_MocA: Oxidore 22.5 1E+02 0.0022 19.7 2.7 25 57-82 95-119 (120)
81 TIGR00343 pyridoxal 5'-phospha 22.2 2.2E+02 0.0048 22.8 4.9 43 51-98 200-246 (287)
82 TIGR01740 pyrF orotidine 5'-ph 22.2 45 0.00098 24.6 1.0 45 52-98 159-211 (213)
83 TIGR00246 tRNA_RlmH_YbeA rRNA 22.1 55 0.0012 23.5 1.4 9 51-59 96-104 (153)
84 PRK13394 3-hydroxybutyrate deh 22.1 3E+02 0.0066 19.7 6.0 31 52-84 9-39 (262)
85 PF02590 SPOUT_MTase: Predicte 21.7 52 0.0011 23.6 1.2 13 47-59 95-107 (155)
86 PRK07067 sorbitol dehydrogenas 21.4 3.1E+02 0.0067 19.8 5.4 30 52-83 8-37 (257)
87 PF13854 Kelch_5: Kelch motif 21.4 64 0.0014 17.5 1.3 9 53-61 17-25 (42)
88 PRK02083 imidazole glycerol ph 21.3 1.9E+02 0.0041 21.6 4.3 45 51-99 75-120 (253)
89 PF07646 Kelch_2: Kelch motif; 21.3 58 0.0013 18.0 1.1 7 53-59 14-20 (49)
90 PRK14813 NADH dehydrogenase su 21.1 2.1E+02 0.0046 21.5 4.4 24 50-73 68-91 (189)
91 PF02702 KdpD: Osmosensitive K 20.6 80 0.0017 24.1 2.1 37 58-96 17-53 (211)
92 PLN02896 cinnamyl-alcohol dehy 20.5 3.2E+02 0.007 21.0 5.5 30 52-83 12-41 (353)
93 COG0371 GldA Glycerol dehydrog 20.4 1.6E+02 0.0035 24.2 3.9 49 50-99 59-109 (360)
94 KOG3079 Uridylate kinase/adeny 20.2 61 0.0013 24.5 1.3 22 51-72 9-30 (195)
95 PRK04302 triosephosphate isome 20.2 2.2E+02 0.0048 21.0 4.4 47 51-101 174-220 (223)
No 1
>KOG1299 consensus Vacuolar sorting protein VPS45/Stt10 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.4e-25 Score=181.46 Aligned_cols=99 Identities=57% Similarity=1.035 Sum_probs=93.9
Q ss_pred CCCccCCccccceeccchHHHHHHHHHcCCCCCCCCcccCCCCCCCCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCeEE
Q 042841 1 MARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTTYEESRSVALENANNSGIRFI 80 (110)
Q Consensus 1 ~~~~~~gv~n~~sr~~P~l~~ii~~l~~~~l~~~~fp~~~~~~~r~~~~~iIVFviGGiTy~E~r~~~~ls~~~~~~~ii 80 (110)
+.++++||+|+|++|+|+|+++++++..|+|++..||++.+..++++|+.|||||+||+||||+|.+++++..+++.+++
T Consensus 450 ~~kglkgvENVytQH~P~lk~~l~~~~rgRl~~~~~p~l~~~~s~~~pq~IIVfivGGaTYEEa~~V~~~N~tn~g~rvv 529 (549)
T KOG1299|consen 450 FIKGLKGVENVYTQHQPLLKSTLEDLFRGRLKEIDYPFLGSQTSRDRPQDIIVFIVGGATYEEARVVHELNATNPGVRVV 529 (549)
T ss_pred HhhccCcchhhhhccCHHHHHHHHHHHhcccccCCCcccccccccCCCceEEEEEECCccHHHHHHHHHHhcCCCceEEE
Confidence 46789999999999999999999999999999999999998888999999999999999999999999999877899999
Q ss_pred EeeccccChHHHHHHHHHh
Q 042841 81 LGGSVILNSKRFLKDLEEA 99 (110)
Q Consensus 81 iGst~il~~~~fl~~L~~l 99 (110)
+|||.++|...|++++...
T Consensus 530 LgGttvlntk~f~~di~~a 548 (549)
T KOG1299|consen 530 LGGTTVLNTKSFIDEIMAA 548 (549)
T ss_pred EcceEEechHHHHHHHhcc
Confidence 9999999999999998753
No 2
>KOG1300 consensus Vesicle trafficking protein Sec1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=6.7e-24 Score=177.09 Aligned_cols=99 Identities=27% Similarity=0.494 Sum_probs=84.8
Q ss_pred ccccc--eeccchHHHHHHHHHcCCCCCCCCcccCCCC----------CC--------------CCCCeEEEEEECCCCH
Q 042841 8 VENVY--TQHQPLLFQTMESIIKGRLRDVDYPFLGNHF----------QQ--------------GRPQDVIIFIVGGTTY 61 (110)
Q Consensus 8 v~n~~--sr~~P~l~~ii~~l~~~~l~~~~fp~~~~~~----------~r--------------~~~~~iIVFviGGiTy 61 (110)
.+++| |||+|.|++|+|++++++||+..|||++.++ +| ...+++||||+||+||
T Consensus 468 ~e~tyqlSR~~P~Ik~ilE~~i~~~Ld~~~fp~~~~~s~~~~~~~~~Sar~~~~~~~k~~~~~~~~g~ri~VfIiGGvT~ 547 (593)
T KOG1300|consen 468 EEQTYQLSRWVPVIKNILEKLIEDRLDKKHFPYLNDTSETSSGSAATSARYGHPLSNKTPSAFKKPGQRIIVFIIGGVTF 547 (593)
T ss_pred ccceeeeeeeehHHHHHHHHHHhccCChhhCccccCCccccccCccccccccCcccccCcchhhccCceEEEEEeCCccH
Confidence 36677 9999999999999999999999999997543 11 2358999999999999
Q ss_pred HHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHhhhccccCC
Q 042841 62 EESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAKSSS 107 (110)
Q Consensus 62 ~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l~~~~~~~~ 107 (110)
+|+|+|||++++ .+++|+||||+|++|.+|++.|+.+....+.++
T Consensus 548 SEmRvaYevs~~-~~~EViiGS~~iltP~~fL~~lk~~~~ked~~~ 592 (593)
T KOG1300|consen 548 SEMRVAYEVSEK-LNREVIIGSDHILTPTKFLDDLKLLKFKEDQSL 592 (593)
T ss_pred HHHHHHHHHHHh-hCceEEECCcccCCHHHHHHHHhhcccccccCC
Confidence 999999999996 789999999999999999999995444444443
No 3
>PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis []. They regulate vesicle transport by binding to a t-SNARE from the syntaxin family. This process is thought to prevent SNARE complex formation, a protein complex required for membrane fusion. Whereas Sec1 molecules are essential for neurotransmitter release and other secretory events, their interaction with syntaxin molecules seems to represent a negative regulatory step in secretion []. ; GO: 0006904 vesicle docking involved in exocytosis, 0016192 vesicle-mediated transport; PDB: 3C98_A 3PUJ_B 1FVH_A 1FVF_A 1EPU_A 2XHE_A 1MQS_A 2PJX_A 3PUK_A 1Y9J_A.
Probab=99.86 E-value=6.8e-22 Score=162.44 Aligned_cols=91 Identities=34% Similarity=0.637 Sum_probs=76.1
Q ss_pred cCCccccceeccchHHHHHHHHHcCCCC-CCCCcccCCCC----------------------CCCCCCeEEEEEECCCCH
Q 042841 5 LKGVENVYTQHQPLLFQTMESIIKGRLR-DVDYPFLGNHF----------------------QQGRPQDVIIFIVGGTTY 61 (110)
Q Consensus 5 ~~gv~n~~sr~~P~l~~ii~~l~~~~l~-~~~fp~~~~~~----------------------~r~~~~~iIVFviGGiTy 61 (110)
.++++++|++|.|+++++++++++++++ ++.||++++.. ...+++++||||+||+||
T Consensus 449 ~~~~~~~~~~y~Pli~rlve~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viVf~vGGvTy 528 (564)
T PF00995_consen 449 PKDISYVYSGYAPLIVRLVEDLIKGKLDKEEEFPYLDPKPKNLNGSSFSLRSSKPSRSKTQPSNKPRKRVIVFFVGGVTY 528 (564)
T ss_dssp CSCCCSTTCT---HHHHHHHHHHTTHSHHTTTSEBSSTCC-----SSSSSS-------------S-SSEEEEEEETEBEH
T ss_pred cccccchhcccccHHHHHHHHHhhccCCcccccccccccccccCCCCcccccccccccccccccCCCCEEEEEEEcCCcH
Confidence 3579999999999999999999999997 88999987643 013457899999999999
Q ss_pred HHHHHHHHHHhcCCC--CeEEEeeccccChHHHHHHH
Q 042841 62 EESRSVALENANNSG--IRFILGGSVILNSKRFLKDL 96 (110)
Q Consensus 62 ~E~r~~~~ls~~~~~--~~iiiGst~il~~~~fl~~L 96 (110)
+|++++++++++ .+ ++|+||||+|+||++|+++|
T Consensus 529 ~Ei~~l~~l~~~-~~~~~~iiigsT~il~~~~fl~~L 564 (564)
T PF00995_consen 529 SEIRALRELSKK-LGPGKEIIIGSTSILNPNDFLESL 564 (564)
T ss_dssp HHHHHHHHHHTT-SSSSSEEEEEESSBE-HHHHHHHH
T ss_pred HHHHHHHHHHHh-hCCCcEEEEEeCCccCHHHHHHhC
Confidence 999999999996 56 99999999999999999986
No 4
>KOG1301 consensus Vesicle trafficking protein Sly1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.4e-17 Score=138.45 Aligned_cols=101 Identities=24% Similarity=0.428 Sum_probs=87.8
Q ss_pred cCCccccc-eeccchHHHHHHHHHcCCC--CCCCCcccCCCCCC----------CCCCeEEEEEECCCCHHHHHHHHHHH
Q 042841 5 LKGVENVY-TQHQPLLFQTMESIIKGRL--RDVDYPFLGNHFQQ----------GRPQDVIIFIVGGTTYEESRSVALEN 71 (110)
Q Consensus 5 ~~gv~n~~-sr~~P~l~~ii~~l~~~~l--~~~~fp~~~~~~~r----------~~~~~iIVFviGGiTy~E~r~~~~ls 71 (110)
+.||+|++ .+..-++.++++.+++.+- ..++|-|+||+.+| .+.++.|||||||++|-|+..+.+++
T Consensus 506 m~GVKNLlp~~q~lPvT~iveal~~~~sn~etddYl~~DPk~~k~~~~~~~~~r~~f~eaIVFvVGGGNYiEYqnL~d~~ 585 (621)
T KOG1301|consen 506 MEGVKNLLPKKQNLPVTRIVEALMDPKSNPETDDYLYFDPKLSKGGSSSLPIKRQPFQEAIVFVVGGGNYIEYQNLVDLA 585 (621)
T ss_pred HhhHHhcCcccccCcHHHHHHHhhCCCCCccccceEeeccccccCCCccccccccchhheEEEEEcCcCeeehhhHHHHH
Confidence 36999999 7999999999999999764 45679999987533 44689999999999999999999999
Q ss_pred hcC-CCCeEEEeeccccChHHHHHHHHHhhhcccc
Q 042841 72 ANN-SGIRFILGGSVILNSKRFLKDLEEAQRTAKS 105 (110)
Q Consensus 72 ~~~-~~~~iiiGst~il~~~~fl~~L~~l~~~~~~ 105 (110)
++. ..++|++|+|.|+||.+|+++|.+|+.+..+
T Consensus 586 krq~~~krIiYGsTeIln~~eFl~qls~Lg~~~~~ 620 (621)
T KOG1301|consen 586 KRQQTVKRIIYGSTEILNAREFLEQLSRLGLKMGS 620 (621)
T ss_pred HhhcccceeEecchhcCCHHHHHHHHHHhcccccC
Confidence 873 3589999999999999999999999987654
No 5
>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion]
Probab=99.63 E-value=5.5e-16 Score=130.61 Aligned_cols=99 Identities=26% Similarity=0.408 Sum_probs=81.3
Q ss_pred ccCCccccceeccchHHHHHHHHHcCCCCCCCCcccC-------CC-----CCCCCCCeEEEEEECCCCHHHHHHHHHHH
Q 042841 4 GLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLG-------NH-----FQQGRPQDVIIFIVGGTTYEESRSVALEN 71 (110)
Q Consensus 4 ~~~gv~n~~sr~~P~l~~ii~~l~~~~l~~~~fp~~~-------~~-----~~r~~~~~iIVFviGGiTy~E~r~~~~ls 71 (110)
.+.+..++|++|.|..+++..+++.+++.+..++... ++ ..+.++++++|||+||+||+|+|++++++
T Consensus 470 ~~~~~~~v~~~~iP~~k~~~~~~~~~~~~~~~~s~~~~s~~~~~~k~~~~~~~~~~~~~~~VfviGG~ty~E~~~~~e~~ 549 (582)
T COG5158 470 GVPDLENVYSGLIPLKKDIPIDLLVRRLFEPLKSSQQQSLRLSRPKGRSRSNKKIPQQRILVFVIGGVTYEELRVLYELN 549 (582)
T ss_pred CCchHHHHHHhhcchhcccchhhhhhhhcccccchhccceeecccccccccccccccceEEEEEECCeehHHHHHHHHHH
Confidence 4566778899999999999999999887654444333 22 12245789999999999999999999999
Q ss_pred hcCCCCeEEEeeccccChHHHHHHHHHhhhc
Q 042841 72 ANNSGIRFILGGSVILNSKRFLKDLEEAQRT 102 (110)
Q Consensus 72 ~~~~~~~iiiGst~il~~~~fl~~L~~l~~~ 102 (110)
.+..+++|++|||.|+||.+|++++..++.+
T Consensus 550 ~~~~~~~ii~Gst~iltp~e~l~~v~~~~~~ 580 (582)
T COG5158 550 ESQNSVRIIYGSTEILTPAEFLDEVKRLGGS 580 (582)
T ss_pred hhcCCeeEEEcCCceecHHHHHHHHHHhccc
Confidence 8633399999999999999999999998764
No 6
>KOG1302 consensus Vacuolar sorting protein VPS33/slp1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=1.6e-12 Score=109.48 Aligned_cols=90 Identities=21% Similarity=0.396 Sum_probs=72.5
Q ss_pred CCccccceeccchHHHHHHHHHcCCCCCCCCccc--------C-----CC--CCCC----CCCeEEEEEECCCCHHHHHH
Q 042841 6 KGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFL--------G-----NH--FQQG----RPQDVIIFIVGGTTYEESRS 66 (110)
Q Consensus 6 ~gv~n~~sr~~P~l~~ii~~l~~~~l~~~~fp~~--------~-----~~--~~r~----~~~~iIVFviGGiTy~E~r~ 66 (110)
.+..++||+|.|+.+++++++++.+.....|..+ + +. .++. ..+.+.|||+||+||+|+++
T Consensus 491 ~DiaYvySgy~PLs~rlve~~l~~~~w~~~~~~i~~l~g~~~e~~~~~~~~~~~~~~~~g~~R~~lVff~GG~T~~EIAa 570 (600)
T KOG1302|consen 491 SDIAYVYSGYAPLSCRLVEDLLKRRGWQELYSKIRNLPGPHFEEVTWTPSDIASKNNSPGALRVTLVFFLGGCTYAEIAA 570 (600)
T ss_pred ccchhhhcccccHHHHHHHHHhcccchhhhHHHHccCCCCchhhcccChhhhcccccCCCCcceEEEEEECCccHHHHHH
Confidence 4678999999999999999999975444344211 1 00 1122 36789999999999999999
Q ss_pred HHHHHhcCCCCeEEEeeccccChHHHHHHH
Q 042841 67 VALENANNSGIRFILGGSVILNSKRFLKDL 96 (110)
Q Consensus 67 ~~~ls~~~~~~~iiiGst~il~~~~fl~~L 96 (110)
++.+++. .+.+++|.+|.++|..++++.+
T Consensus 571 lr~l~~~-~~~~f~i~Tt~ling~~ll~~~ 599 (600)
T KOG1302|consen 571 LRFLAKL-EGYRFLIATTGLINGSSLLEAI 599 (600)
T ss_pred HHHHHhh-cCceEEEEeccccchHHHHHhh
Confidence 9999985 7899999999999999999875
No 7
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=83.38 E-value=2.5 Score=30.79 Aligned_cols=44 Identities=16% Similarity=0.413 Sum_probs=33.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHh
Q 042841 51 VIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEA 99 (110)
Q Consensus 51 iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l 99 (110)
..|.+.||+|-+.++.+.+ .+.++++-|+.|.+..+..+.+.++
T Consensus 171 ~~i~v~GGI~~~nv~~l~~-----~GaD~vvvgSai~~~~d~~~~~~~~ 214 (220)
T PRK05581 171 ILIEVDGGINADNIKECAE-----AGADVFVAGSAVFGAPDYKEAIDSL 214 (220)
T ss_pred ceEEEECCCCHHHHHHHHH-----cCCCEEEEChhhhCCCCHHHHHHHH
Confidence 5677889999976655443 4788899899999877776666655
No 8
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=80.31 E-value=3.4 Score=28.95 Aligned_cols=45 Identities=22% Similarity=0.214 Sum_probs=31.2
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHh
Q 042841 50 DVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEA 99 (110)
Q Consensus 50 ~iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l 99 (110)
.+-|++.||++-+.++.+. + .|.+.+..|+.+....+..+.+..+
T Consensus 150 ~~pv~a~GGi~~~~i~~~~---~--~Ga~~i~~g~~i~~~~~~~~~~~~l 194 (196)
T cd00564 150 EIPVVAIGGITPENAAEVL---A--AGADGVAVISAITGADDPAAAAREL 194 (196)
T ss_pred CCCEEEECCCCHHHHHHHH---H--cCCCEEEEehHhhcCCCHHHHHHHH
Confidence 4568999999976555443 3 3677777788888766666666554
No 9
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=79.49 E-value=15 Score=24.09 Aligned_cols=58 Identities=22% Similarity=0.292 Sum_probs=37.5
Q ss_pred hHHHHHHHHHcCCCCCCCCcccCCCCCCCCCCeEEEEEECC--CCHHHHHHHHHHHhc--CCCCeEEEeec
Q 042841 18 LLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGG--TTYEESRSVALENAN--NSGIRFILGGS 84 (110)
Q Consensus 18 ~l~~ii~~l~~~~l~~~~fp~~~~~~~r~~~~~iIVFviGG--iTy~E~r~~~~ls~~--~~~~~iiiGst 84 (110)
.+.+.+++.+++.|-+.++ ..-+.++|-|.|| +|+.|+..+-+.-++ ..+.+|+.|.+
T Consensus 15 r~~~Av~~Al~spLl~~~i---------~~A~~vLvni~~~~d~~l~ev~~~~~~i~~~~~~~a~ii~G~~ 76 (95)
T PF12327_consen 15 RAEEAVEQALNSPLLDVDI---------KGAKGVLVNITGGPDLSLSEVNEAMEIIREKADPDANIIWGAS 76 (95)
T ss_dssp HHHHHHHHHHTSTTSTS-G---------GG-SEEEEEEEE-TTS-HHHHHHHHHHHHHHSSTTSEEEEEEE
T ss_pred HHHHHHHHHHhCccccCCh---------HHhceEEEEEEcCCCCCHHHHHHHHHHHHHHhhcCceEEEEEE
Confidence 4667888888876633221 1247899999997 779998887654432 35678888754
No 10
>PLN02334 ribulose-phosphate 3-epimerase
Probab=78.15 E-value=3.8 Score=30.59 Aligned_cols=45 Identities=18% Similarity=0.283 Sum_probs=32.7
Q ss_pred EEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHhh
Q 042841 51 VIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQ 100 (110)
Q Consensus 51 iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l~ 100 (110)
+-|.++||+|-+.++.+.+ .|.+.++.|+.|....+..+.+.++.
T Consensus 175 ~~I~a~GGI~~e~i~~l~~-----aGad~vvvgsai~~~~d~~~~~~~l~ 219 (229)
T PLN02334 175 LDIEVDGGVGPSTIDKAAE-----AGANVIVAGSAVFGAPDYAEVISGLR 219 (229)
T ss_pred CcEEEeCCCCHHHHHHHHH-----cCCCEEEEChHHhCCCCHHHHHHHHH
Confidence 4689999999887766543 37777777888887767666666553
No 11
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=77.93 E-value=4.8 Score=30.39 Aligned_cols=46 Identities=24% Similarity=0.476 Sum_probs=33.0
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHhh
Q 042841 50 DVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQ 100 (110)
Q Consensus 50 ~iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l~ 100 (110)
.+-|.+.||+|-+.++.+. + .|.++++.|+.+.+.+++.+.+..+.
T Consensus 167 ~~~I~vdGGI~~eni~~l~---~--aGAd~vVvGSaIf~~~d~~~~i~~l~ 212 (220)
T PRK08883 167 DIRLEIDGGVKVDNIREIA---E--AGADMFVAGSAIFGQPDYKAVIDEMR 212 (220)
T ss_pred CeeEEEECCCCHHHHHHHH---H--cCCCEEEEeHHHhCCCCHHHHHHHHH
Confidence 4778899999977666544 3 47788888888986666655555553
No 12
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=75.36 E-value=5.2 Score=28.80 Aligned_cols=46 Identities=22% Similarity=0.175 Sum_probs=31.4
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHhh
Q 042841 50 DVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQ 100 (110)
Q Consensus 50 ~iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l~ 100 (110)
.+-|++.||+|-+.++.+. + .|.+.+..|+.|.+..+..+.+.++.
T Consensus 160 ~~~v~a~GGI~~~~i~~~~---~--~Ga~gv~~gs~i~~~~d~~~~~~~l~ 205 (212)
T PRK00043 160 DIPIVAIGGITPENAPEVL---E--AGADGVAVVSAITGAEDPEAAARALL 205 (212)
T ss_pred CCCEEEECCcCHHHHHHHH---H--cCCCEEEEeHHhhcCCCHHHHHHHHH
Confidence 3779999999976655433 3 47788888888877655555555443
No 13
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=70.51 E-value=8.1 Score=27.74 Aligned_cols=44 Identities=16% Similarity=0.366 Sum_probs=30.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHh
Q 042841 51 VIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEA 99 (110)
Q Consensus 51 iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l 99 (110)
+-+.+.||+|-+.+ .++.+ .+.+.++-|+.+.++.+.-+.+.++
T Consensus 166 ~~i~v~GGI~~env---~~l~~--~gad~iivgsai~~~~d~~~~~~~~ 209 (210)
T TIGR01163 166 ILIEVDGGVNDDNA---RELAE--AGADILVAGSAIFGADDYKEVIRSL 209 (210)
T ss_pred ceEEEECCcCHHHH---HHHHH--cCCCEEEEChHHhCCCCHHHHHHHh
Confidence 45789999996544 44443 4778788888888877766665543
No 14
>PRK15383 type III secretion system protein; Provisional
Probab=68.11 E-value=4.5 Score=32.11 Aligned_cols=81 Identities=20% Similarity=0.337 Sum_probs=51.5
Q ss_pred ccCCccccc---eeccchHHHHHHHHHc----CC---CCCCCCcccCCC--CCCCCCCe-EEEEEECCCCHHHHHHHHHH
Q 042841 4 GLKGVENVY---TQHQPLLFQTMESIIK----GR---LRDVDYPFLGNH--FQQGRPQD-VIIFIVGGTTYEESRSVALE 70 (110)
Q Consensus 4 ~~~gv~n~~---sr~~P~l~~ii~~l~~----~~---l~~~~fp~~~~~--~~r~~~~~-iIVFviGGiTy~E~r~~~~l 70 (110)
.|+|.++.+ ..++|.+-+-.|.-=+ +. +.+..-||++.- +++-...+ +=|||=|--||+.-.++..|
T Consensus 31 sFaGkeY~l~~iDektPilFQWFE~nP~R~~k~evPIiNTk~~PYL~NiinaA~IE~eR~IGv~VDGdFs~~Qk~af~kL 110 (335)
T PRK15383 31 SFAGIDYPLLPLDHHTPLVFQWFERNPDRFGQNEIPIINTQKNPYLNNIINAAIIEKERIIGIFVDGDFSKGQRKALGKL 110 (335)
T ss_pred eecCccccccccCCCCCeeeeeccCCHHHhCCCCCceeecCcCchHHHhhhHhhhccccEEEEEEcCCcChhHHHHHHHH
Confidence 467888776 6788888764432111 11 122344444421 23333344 44999999999999999988
Q ss_pred HhcCCCCeEEEeec
Q 042841 71 NANNSGIRFILGGS 84 (110)
Q Consensus 71 s~~~~~~~iiiGst 84 (110)
.+...+..||+-++
T Consensus 111 E~~yeNIkiIYr~d 124 (335)
T PRK15383 111 EQNYRNIKVIYNSD 124 (335)
T ss_pred HHhhhcEEEEEecc
Confidence 87667888888654
No 15
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=66.37 E-value=11 Score=27.02 Aligned_cols=44 Identities=23% Similarity=0.450 Sum_probs=30.4
Q ss_pred EEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHh
Q 042841 51 VIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEA 99 (110)
Q Consensus 51 iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l 99 (110)
+-+++.||+|-+.++ ++.+ .+.+.++-|+.+.+..+..+.+.++
T Consensus 167 ~pi~v~GGI~~env~---~~~~--~gad~iivgsai~~~~~~~~~~~~~ 210 (211)
T cd00429 167 LLIEVDGGINLETIP---LLAE--AGADVLVAGSALFGSDDYAEAIKEL 210 (211)
T ss_pred eEEEEECCCCHHHHH---HHHH--cCCCEEEECHHHhCCCCHHHHHHHh
Confidence 568899999975544 4443 3677778888888877766655543
No 16
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=65.58 E-value=10 Score=28.49 Aligned_cols=46 Identities=26% Similarity=0.322 Sum_probs=33.6
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHhh
Q 042841 50 DVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQ 100 (110)
Q Consensus 50 ~iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l~ 100 (110)
.+-+-|-||+|-+.++.+.+ .|.++++.|+.|...++..+.+..+.
T Consensus 173 ~~~I~VdGGI~~~ti~~~~~-----aGad~iVvGsaI~~a~d~~~~~~~i~ 218 (228)
T PTZ00170 173 HLNIQVDGGINLETIDIAAD-----AGANVIVAGSSIFKAKDRKQAIELLR 218 (228)
T ss_pred cCeEEECCCCCHHHHHHHHH-----cCCCEEEEchHHhCCCCHHHHHHHHH
Confidence 46688899999987776543 47788888888887666666655553
No 17
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=65.39 E-value=15 Score=26.48 Aligned_cols=45 Identities=13% Similarity=0.241 Sum_probs=29.0
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHh
Q 042841 50 DVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEA 99 (110)
Q Consensus 50 ~iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l 99 (110)
...+.+.||+|.+.++.+. + .|.+.++.|+.+.++.+.-+.+..+
T Consensus 158 ~~~i~v~GGI~~~n~~~~~---~--~Ga~~v~vGsai~~~~d~~~~~~~l 202 (206)
T TIGR03128 158 EARVAVAGGINLDTIPDVI---K--LGPDIVIVGGAITKAADPAEAARQI 202 (206)
T ss_pred CCcEEEECCcCHHHHHHHH---H--cCCCEEEEeehhcCCCCHHHHHHHH
Confidence 3456679999998776543 3 3777777777788655544444433
No 18
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=63.68 E-value=11 Score=26.87 Aligned_cols=42 Identities=24% Similarity=0.242 Sum_probs=29.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHH
Q 042841 51 VIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLE 97 (110)
Q Consensus 51 iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~ 97 (110)
+=|+..||+|-+.++.+ .+ .|.+.+..++.|.+.++-.+.+.
T Consensus 153 ~pv~a~GGI~~~~~~~~---~~--~G~~gva~~~~i~~~~dp~~~~~ 194 (196)
T TIGR00693 153 IPIVAIGGITLENAAEV---LA--AGADGVAVVSAIMQAADPKAAAK 194 (196)
T ss_pred CCEEEECCcCHHHHHHH---HH--cCCCEEEEhHHhhCCCCHHHHHH
Confidence 55999999997665544 33 47788888888887665544443
No 19
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=63.36 E-value=14 Score=26.42 Aligned_cols=43 Identities=16% Similarity=0.243 Sum_probs=30.1
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHH
Q 042841 50 DVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLE 97 (110)
Q Consensus 50 ~iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~ 97 (110)
.+-+.+.||++.+- +.++.+ .|.+.++.|+.|...++.-+.+.
T Consensus 158 ~~~i~~~GGI~~~~---i~~~~~--~Gad~vvvGsai~~~~d~~~~~~ 200 (202)
T cd04726 158 GVKVAVAGGITPDT---LPEFKK--AGADIVIVGRAITGAADPAEAAR 200 (202)
T ss_pred CCCEEEECCcCHHH---HHHHHh--cCCCEEEEeehhcCCCCHHHHHh
Confidence 57799999999544 344444 47787888888887766655444
No 20
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=61.53 E-value=22 Score=27.01 Aligned_cols=45 Identities=20% Similarity=0.373 Sum_probs=33.5
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHh
Q 042841 50 DVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEA 99 (110)
Q Consensus 50 ~iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l 99 (110)
.+.|-|=||++-+.++.+.+ .|.++++.|+.+.+..+.-+.+..+
T Consensus 171 ~~~IeVDGGI~~eti~~l~~-----aGaDi~V~GSaiF~~~d~~~~~~~l 215 (223)
T PRK08745 171 PIRLEIDGGVKADNIGAIAA-----AGADTFVAGSAIFNAPDYAQVIAQM 215 (223)
T ss_pred CeeEEEECCCCHHHHHHHHH-----cCCCEEEEChhhhCCCCHHHHHHHH
Confidence 58899999999887776543 4778899999998655555555444
No 21
>PRK10039 hypothetical protein; Provisional
Probab=61.15 E-value=22 Score=25.09 Aligned_cols=42 Identities=19% Similarity=0.220 Sum_probs=28.8
Q ss_pred ECCCCHHHHHHHHHHHhcCCCC---e-EEEeeccccChHHHHHHHH
Q 042841 56 VGGTTYEESRSVALENANNSGI---R-FILGGSVILNSKRFLKDLE 97 (110)
Q Consensus 56 iGGiTy~E~r~~~~ls~~~~~~---~-iiiGst~il~~~~fl~~L~ 97 (110)
=||.|=-|.|+++|++.....+ . ++...+.-++-++.++.+.
T Consensus 80 EGGlS~VE~R~l~Ela~ga~~~~~~~v~~~~~~~pLsD~evi~~~~ 125 (127)
T PRK10039 80 EGGLSQVEERILIELAVGSTPKGYRQLYIHPQSVPLSDSAVIQIIK 125 (127)
T ss_pred CCCccHHHHHHHHHHHhhhcccccceEEEeCCCCcCCHHHHHHHHh
Confidence 3899999999999999642222 3 4444455577777766554
No 22
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=60.74 E-value=56 Score=22.96 Aligned_cols=22 Identities=14% Similarity=0.296 Sum_probs=12.4
Q ss_pred CCCeEEEeeccccChHHHHHHHHH
Q 042841 75 SGIRFILGGSVILNSKRFLKDLEE 98 (110)
Q Consensus 75 ~~~~iiiGst~il~~~~fl~~L~~ 98 (110)
.|.+=+.|..+ .+++.++.|.+
T Consensus 109 ~Gv~~vF~pgt--~~~~iv~~l~~ 130 (134)
T TIGR01501 109 MGFDRVFAPGT--PPEVVIADLKK 130 (134)
T ss_pred cCCCEEECcCC--CHHHHHHHHHH
Confidence 45665555444 55666666554
No 23
>PRK15382 non-LEE encoded effector protein NleB; Provisional
Probab=60.74 E-value=6.9 Score=31.03 Aligned_cols=81 Identities=22% Similarity=0.345 Sum_probs=50.7
Q ss_pred ccCCccccc---eeccchHHHHHHHHHc----CC---CCCCCCcccCCC--CCCCCC-CeEEEEEECCCCHHHHHHHHHH
Q 042841 4 GLKGVENVY---TQHQPLLFQTMESIIK----GR---LRDVDYPFLGNH--FQQGRP-QDVIIFIVGGTTYEESRSVALE 70 (110)
Q Consensus 4 ~~~gv~n~~---sr~~P~l~~ii~~l~~----~~---l~~~~fp~~~~~--~~r~~~-~~iIVFviGGiTy~E~r~~~~l 70 (110)
.|+|.++.+ ...+|.+-|-.|.-=+ +. +.+..-||++.- +++-.. +.+=|||=|--||+.-.++..|
T Consensus 25 sFaGkeY~l~~idekTPilFQWFE~nP~R~~k~evPIiNTk~~PYL~NiinaA~IE~eR~IGv~VDGdFs~~Qk~af~kL 104 (326)
T PRK15382 25 SFAGKEYELEPIDEKTPILFQWFEARPERYKKGEVPILNTKEHPYLSNIINAAKIENERIIGVLVDGDFTYEQKKEFLSL 104 (326)
T ss_pred eecCccccccccCCCCCeeeeeccCCHHHhCCCCCceeecCcCchHHHhhhHhhhccccEEEEEEcCCcChhHHHHHHHH
Confidence 367877766 5788887764432111 11 122344444421 233333 4444999999999999999988
Q ss_pred HhcCCCCeEEEeec
Q 042841 71 NANNSGIRFILGGS 84 (110)
Q Consensus 71 s~~~~~~~iiiGst 84 (110)
.+...+..||+-.+
T Consensus 105 E~~~eNIkiIYr~d 118 (326)
T PRK15382 105 ENEFQNIKIIYRED 118 (326)
T ss_pred HHhhhcEEEEEecc
Confidence 87666888888654
No 24
>PRK15384 type III secretion system protein; Provisional
Probab=60.39 E-value=7.5 Score=30.88 Aligned_cols=81 Identities=19% Similarity=0.257 Sum_probs=48.9
Q ss_pred ccCCccccc---eeccchHHHHHHHHHc----CC---CCCCCCcccCCC--CCCCCCCe-EEEEEECCCCHHHHHHHHHH
Q 042841 4 GLKGVENVY---TQHQPLLFQTMESIIK----GR---LRDVDYPFLGNH--FQQGRPQD-VIIFIVGGTTYEESRSVALE 70 (110)
Q Consensus 4 ~~~gv~n~~---sr~~P~l~~ii~~l~~----~~---l~~~~fp~~~~~--~~r~~~~~-iIVFviGGiTy~E~r~~~~l 70 (110)
.|+|.++.+ ...+|.+-+-.|.-=+ +. +.+..-||++.- +++-...+ +=|||=|--||+.-.++..|
T Consensus 30 sFaGkeY~l~~idektPilFQWFE~nP~R~~k~evPIiNTk~~PYL~NiinaA~IE~eR~IGv~VDGdFs~~Qk~af~kL 109 (336)
T PRK15384 30 SFNGKDYPLCFLDEKTPLLFQWFERNPARFGKNDIPIINTEKNPYLNNIIKAATIEKERLIGIFVDGDFFPGQKDAFSKL 109 (336)
T ss_pred eecCccccccccCCCCCeeeeeccCCHHHhCCCCCceeecCcCchHHHhHhHhhhccccEEEEEEcCCcChhHHHHHHHH
Confidence 356777666 5677777654332111 11 112333444321 23333344 44999999999999999988
Q ss_pred HhcCCCCeEEEeec
Q 042841 71 NANNSGIRFILGGS 84 (110)
Q Consensus 71 s~~~~~~~iiiGst 84 (110)
.+...+..||+-++
T Consensus 110 E~~yeNIkiIYr~d 123 (336)
T PRK15384 110 EYDYENIKVIYRND 123 (336)
T ss_pred HHhhhcEEEEEecc
Confidence 87667888888654
No 25
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=55.64 E-value=28 Score=26.67 Aligned_cols=46 Identities=22% Similarity=0.340 Sum_probs=34.4
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHhh
Q 042841 50 DVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQ 100 (110)
Q Consensus 50 ~iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l~ 100 (110)
++.|-|=||++-+.++.+.+ .|.+++++|+.+.+..++-+.+..+.
T Consensus 179 ~~~IeVDGGI~~~ti~~l~~-----aGaD~~V~GSalF~~~d~~~~i~~l~ 224 (228)
T PRK08091 179 EKLISIDGSMTLELASYLKQ-----HQIDWVVSGSALFSQGELKTTLKEWK 224 (228)
T ss_pred CceEEEECCCCHHHHHHHHH-----CCCCEEEEChhhhCCCCHHHHHHHHH
Confidence 58899999999887776543 48899999999986555555555543
No 26
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=49.72 E-value=29 Score=26.61 Aligned_cols=45 Identities=22% Similarity=0.279 Sum_probs=31.5
Q ss_pred eEEEEEECCC-CHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHh
Q 042841 50 DVIIFIVGGT-TYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEA 99 (110)
Q Consensus 50 ~iIVFviGGi-Ty~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l 99 (110)
.+.++-.||+ |-++++.+.+. |.+.++-|+.|+.+.+.-+.+.++
T Consensus 211 ~~~vIaegGI~t~ed~~~~~~~-----Gad~vlVGsaI~~~~dp~~~~~~l 256 (260)
T PRK00278 211 DRLVVSESGIFTPEDLKRLAKA-----GADAVLVGESLMRADDPGAALREL 256 (260)
T ss_pred CCEEEEEeCCCCHHHHHHHHHc-----CCCEEEECHHHcCCCCHHHHHHHH
Confidence 4456666676 78888876643 666677788898887776666655
No 27
>PRK08005 epimerase; Validated
Probab=49.56 E-value=35 Score=25.68 Aligned_cols=44 Identities=18% Similarity=0.326 Sum_probs=34.4
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHhh
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQ 100 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l~ 100 (110)
-+-|=||+|-+.++.+.+ .|.++++.|+.+.+..++-+.+..+.
T Consensus 165 ~I~VDGGI~~~~i~~l~~-----aGad~~V~GsaiF~~~d~~~~~~~~~ 208 (210)
T PRK08005 165 ECWADGGITLRAARLLAA-----AGAQHLVIGRALFTTANYDVTLSQFT 208 (210)
T ss_pred CEEEECCCCHHHHHHHHH-----CCCCEEEEChHhhCCCCHHHHHHHHh
Confidence 389999999888876553 48899999999987767777766654
No 28
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=48.95 E-value=57 Score=23.91 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=32.2
Q ss_pred eEEEEEECCC-CHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHh
Q 042841 50 DVIIFIVGGT-TYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEA 99 (110)
Q Consensus 50 ~iIVFviGGi-Ty~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l 99 (110)
.+-|...||+ |-+++..+.+ .|.+.++-|+.+..+.+-.+.+.++
T Consensus 173 ~iPvia~GGI~t~~~~~~~l~-----~GadgV~iGsai~~~~~~~~~~~~~ 218 (221)
T PRK01130 173 GCPVIAEGRINTPEQAKKALE-----LGAHAVVVGGAITRPEEITKWFVDA 218 (221)
T ss_pred CCCEEEECCCCCHHHHHHHHH-----CCCCEEEEchHhcCCHHHHHHHHHH
Confidence 3567889999 6777776554 2556677778899988777766653
No 29
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=47.60 E-value=31 Score=28.51 Aligned_cols=47 Identities=19% Similarity=0.338 Sum_probs=33.0
Q ss_pred CeEEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHhh
Q 042841 49 QDVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQ 100 (110)
Q Consensus 49 ~~iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l~ 100 (110)
.++.|-+.||++.+.++. +.+ .|.++++.|+.|..+.+..+.+..+.
T Consensus 329 ~~~~I~VdGGI~~eti~~---l~~--aGADivVVGsaIf~a~Dp~~aak~l~ 375 (391)
T PRK13307 329 GKILVAVAGGVRVENVEE---ALK--AGADILVVGRAITKSKDVRRAAEDFL 375 (391)
T ss_pred CCCcEEEECCcCHHHHHH---HHH--cCCCEEEEeHHHhCCCCHHHHHHHHH
Confidence 357799999999776554 443 47788888888887666655555543
No 30
>PF06122 TraH: Conjugative relaxosome accessory transposon protein; InterPro: IPR010927 Six Tra proteins encoded by the F plasmid and required by F(+) cells to elaborate F pili. The six proteins are TraH, TraF, TraW, TraU, TrbI, and TrbB. Except for TrbI, these proteins were all identified as hallmarks of F-like type IV secretion systems (TFSSs), with no homologues among TFSS genes of P-type or I-type systems. With the exception of TrbI, which is an inner membrane protein, the remaining proteins are or are predicted to be periplasmic. TrbI consists of one membrane-spanning segment near its N terminus and an 88-residue, hydrophilic domain that extends into the periplasm []. It has been proposed that the TraH interaction group is to control F-pilus extension and retraction during conjugation [, , ].
Probab=45.26 E-value=17 Score=29.36 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=24.4
Q ss_pred CCCeEEEeeccccChHHHHHHHHHhhh
Q 042841 75 SGIRFILGGSVILNSKRFLKDLEEAQR 101 (110)
Q Consensus 75 ~~~~iiiGst~il~~~~fl~~L~~l~~ 101 (110)
.|+|++.||-+++|+++|++.++.+..
T Consensus 56 GGID~f~GsFSfIn~dqlVq~lr~Ia~ 82 (361)
T PF06122_consen 56 GGIDLFMGSFSFINSDQLVQMLRNIAS 82 (361)
T ss_pred CceeccccccccCCHHHHHHHHHHHHH
Confidence 478999999999999999999998754
No 31
>smart00612 Kelch Kelch domain.
Probab=44.39 E-value=14 Score=19.41 Aligned_cols=8 Identities=50% Similarity=1.107 Sum_probs=6.9
Q ss_pred EEEECCCC
Q 042841 53 IFIVGGTT 60 (110)
Q Consensus 53 VFviGGiT 60 (110)
||++||.+
T Consensus 2 iyv~GG~~ 9 (47)
T smart00612 2 IYVVGGFD 9 (47)
T ss_pred EEEEeCCC
Confidence 79999976
No 32
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=43.14 E-value=8.3 Score=21.01 Aligned_cols=9 Identities=33% Similarity=0.837 Sum_probs=7.3
Q ss_pred EEEECCCCH
Q 042841 53 IFIVGGTTY 61 (110)
Q Consensus 53 VFviGGiTy 61 (110)
|||+||.+-
T Consensus 14 iyv~GG~~~ 22 (47)
T PF01344_consen 14 IYVIGGYDG 22 (47)
T ss_dssp EEEEEEBES
T ss_pred EEEEeeecc
Confidence 799999764
No 33
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=43.01 E-value=29 Score=29.54 Aligned_cols=19 Identities=21% Similarity=0.501 Sum_probs=15.9
Q ss_pred eEEEEEECCCCHHHHHHHH
Q 042841 50 DVIIFIVGGTTYEESRSVA 68 (110)
Q Consensus 50 ~iIVFviGGiTy~E~r~~~ 68 (110)
+++..+.||.||+|++.+.
T Consensus 230 ~v~~~~~gg~t~~ei~~~~ 248 (513)
T TIGR01861 230 QVLSTFTGNGSYDDLRGMH 248 (513)
T ss_pred eEEEEeCCCCCHHHHHhhc
Confidence 6677888999999998765
No 34
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=41.85 E-value=54 Score=22.76 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=21.6
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhcCCCCeEE-EeeccccChHHHHHHHHHh
Q 042841 50 DVIIFIVGGTTYEESRSVALENANNSGIRFI-LGGSVILNSKRFLKDLEEA 99 (110)
Q Consensus 50 ~iIVFviGGiTy~E~r~~~~ls~~~~~~~ii-iGst~il~~~~fl~~L~~l 99 (110)
+++=.=+||.|..+....+.+....+..=|+ +|+.++....+|.+.+..+
T Consensus 33 ~v~N~g~~G~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~ 83 (177)
T cd01844 33 EVINLGFSGNARLEPEVAELLRDVPADLYIIDCGPNIVGAEAMVRERLGPL 83 (177)
T ss_pred CeEEeeecccccchHHHHHHHHhcCCCEEEEEeccCCCccHHHHHHHHHHH
Confidence 3444445555554433222222212332222 4555554444555555554
No 35
>PF09176 Mpt_N: Methylene-tetrahydromethanopterin dehydrogenase, N-terminal; InterPro: IPR015259 Prokaryotic methylene-tetrahydromethanopterin dehydrogenase catalyses the dehydrogenation of methylene-tetrahydromethanopterin during growth on one-carbon compounds such as methanol. It can also catalyse the reversible dehydrogenation of methylene-tetrahydrofolate, though at much lower efficiency []. The pterin domain of this protein is composed of two alpha-beta segments found at the N- and C-terminal ends of the polypeptide respectivly. This entry represents the N-terminal segment of the pterin domain, with a core comprising three alpha/beta/alpha layers in which each sheet contains four strands. ; PDB: 1LUA_A 1LU9_C.
Probab=41.44 E-value=23 Score=23.15 Aligned_cols=46 Identities=20% Similarity=0.315 Sum_probs=30.0
Q ss_pred EEECCCCHHHHHHHHHHHh--c----CCCCeEEEeeccccChHHHHHHHHHh
Q 042841 54 FIVGGTTYEESRSVALENA--N----NSGIRFILGGSVILNSKRFLKDLEEA 99 (110)
Q Consensus 54 FviGGiTy~E~r~~~~ls~--~----~~~~~iiiGst~il~~~~fl~~L~~l 99 (110)
.=-||+|-+|.+.+..=+- + ..+.-|+|||.++.-+.++++..++-
T Consensus 16 ~py~~V~~~~V~~LvqdaIFsR~P~~~~~TaiFIGG~d~~~a~dml~~ak~a 67 (81)
T PF09176_consen 16 IPYGGVTPDEVRGLVQDAIFSRGPKDLKRTAIFIGGRDVALAEDMLEAAKKA 67 (81)
T ss_dssp EEESS--TTTHHHHHHHHHSSS-GGGGGGEEEEEE-S-HHHHHHHHHHHHHH
T ss_pred eccCCcCHHHhhhhhcceeEccCCcCCceeEEEECCccHHHHHHHHHHHHHh
Confidence 3458999999988754321 1 13457999999999999999887754
No 36
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=40.52 E-value=99 Score=19.87 Aligned_cols=39 Identities=18% Similarity=0.347 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHHhc-CCCCeEEEeecc-ccChHHHHHH
Q 042841 57 GGTTYEESRSVALENAN-NSGIRFILGGSV-ILNSKRFLKD 95 (110)
Q Consensus 57 GGiTy~E~r~~~~ls~~-~~~~~iiiGst~-il~~~~fl~~ 95 (110)
=+-++.+++.+.+..++ .++..|++||.+ -..|+.+++.
T Consensus 61 ~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~t~~~~~~l~~ 101 (121)
T PF02310_consen 61 MTPNLPEAKRLARAIKERNPNIPIVVGGPHATADPEEILRE 101 (121)
T ss_dssp SSTHHHHHHHHHHHHHTTCTTSEEEEEESSSGHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHHHhcCCCCEEEEECCchhcChHHHhcc
Confidence 57788888777766654 568899999998 4566666654
No 37
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=39.13 E-value=45 Score=24.91 Aligned_cols=44 Identities=11% Similarity=0.202 Sum_probs=32.2
Q ss_pred EEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHhhh
Q 042841 53 IFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQR 101 (110)
Q Consensus 53 VFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l~~ 101 (110)
+.|.||++.+.++.+ .+ .+-++++-|..|..+.+..+....+..
T Consensus 166 i~V~gGI~~~~~~~~---~~--~~ad~~VvGr~I~~a~dp~~a~~~i~~ 209 (216)
T PRK13306 166 VSVTGGLVVEDLKLF---KG--IPVKTFIAGRAIRGAADPAAAARAFKD 209 (216)
T ss_pred EEEcCCCCHhhHHHH---hc--CCCCEEEECCcccCCCCHHHHHHHHHH
Confidence 899999999988873 22 356777777779877776666665543
No 38
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=39.03 E-value=37 Score=24.77 Aligned_cols=45 Identities=24% Similarity=0.333 Sum_probs=30.1
Q ss_pred CeEEEEEECCCCH-HHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHH
Q 042841 49 QDVIIFIVGGTTY-EESRSVALENANNSGIRFILGGSVILNSKRFLKDLEE 98 (110)
Q Consensus 49 ~~iIVFviGGiTy-~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~ 98 (110)
..+.|+..||++- ++++.+.++ |.+-++-|+.|..+.+..+.+.+
T Consensus 171 ~~~pvia~gGI~s~edi~~~~~~-----Ga~gvivGsai~~~~~p~~~~~~ 216 (217)
T cd00331 171 KDVILVSESGISTPEDVKRLAEA-----GADAVLIGESLMRAPDPGAALRE 216 (217)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHc-----CCCEEEECHHHcCCCCHHHHHHh
Confidence 3567888899965 666665543 55666677778777766665544
No 39
>PRK14057 epimerase; Provisional
Probab=38.34 E-value=68 Score=25.03 Aligned_cols=46 Identities=24% Similarity=0.395 Sum_probs=33.6
Q ss_pred CeEEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHh
Q 042841 49 QDVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEA 99 (110)
Q Consensus 49 ~~iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l 99 (110)
-.+.|-|=||++-+.++.+.+ .|.++++.|+.+....++-+.+..+
T Consensus 192 ~~~~IeVDGGI~~~ti~~l~~-----aGad~~V~GSalF~~~d~~~~i~~l 237 (254)
T PRK14057 192 EGKIIVIDGSLTQDQLPSLIA-----QGIDRVVSGSALFRDDRLVENTRSW 237 (254)
T ss_pred CCceEEEECCCCHHHHHHHHH-----CCCCEEEEChHhhCCCCHHHHHHHH
Confidence 368899999999988776553 4889999999998554444444443
No 40
>PRK07695 transcriptional regulator TenI; Provisional
Probab=38.12 E-value=65 Score=23.26 Aligned_cols=40 Identities=30% Similarity=0.341 Sum_probs=27.1
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHH
Q 042841 50 DVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLK 94 (110)
Q Consensus 50 ~iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~ 94 (110)
.+=|+.+||++-+.+..+. + .|.+.+..++.+.+..+..+
T Consensus 149 ~ipvia~GGI~~~~~~~~~---~--~Ga~gvav~s~i~~~~~p~~ 188 (201)
T PRK07695 149 SIPVIAIGGITPENTRDVL---A--AGVSGIAVMSGIFSSANPYS 188 (201)
T ss_pred CCCEEEEcCCCHHHHHHHH---H--cCCCEEEEEHHHhcCCCHHH
Confidence 3568899999877666554 3 46777777788876444333
No 41
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=37.96 E-value=60 Score=23.80 Aligned_cols=41 Identities=15% Similarity=0.145 Sum_probs=27.7
Q ss_pred eEEEEEECCC-CHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHH
Q 042841 50 DVIIFIVGGT-TYEESRSVALENANNSGIRFILGGSVILNSKRFLKD 95 (110)
Q Consensus 50 ~iIVFviGGi-Ty~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~ 95 (110)
.+-|+..||+ |.++++.+.+ .+.+-++-|+.+.++.++..+
T Consensus 177 ~ipvia~GGI~~~~~~~~~l~-----~GadgV~vGsal~~~~~~~~~ 218 (219)
T cd04729 177 GIPVIAEGRINSPEQAAKALE-----LGADAVVVGSAITRPEHITGW 218 (219)
T ss_pred CCCEEEeCCCCCHHHHHHHHH-----CCCCEEEEchHHhChHhHhhh
Confidence 3567788898 5666665443 256667777888888877654
No 42
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=36.45 E-value=1.3e+02 Score=21.68 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=29.2
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHH
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLE 97 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~ 97 (110)
.|+|.||..+-=...++.|.+. +.+|++-+.+--....+.+++.
T Consensus 14 ~vlItG~~g~iG~~la~~l~~~--G~~Vi~~~r~~~~~~~~~~~l~ 57 (247)
T PRK08945 14 IILVTGAGDGIGREAALTYARH--GATVILLGRTEEKLEAVYDEIE 57 (247)
T ss_pred EEEEeCCCchHHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHH
Confidence 5889999998888888888874 6677665544333334444443
No 43
>PRK07890 short chain dehydrogenase; Provisional
Probab=34.74 E-value=1.3e+02 Score=21.66 Aligned_cols=31 Identities=10% Similarity=0.119 Sum_probs=23.7
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEeec
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGGS 84 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst 84 (110)
.++|.||.++-=...+..+.++ +.+|++.+-
T Consensus 7 ~vlItGa~~~IG~~la~~l~~~--G~~V~~~~r 37 (258)
T PRK07890 7 VVVVSGVGPGLGRTLAVRAARA--GADVVLAAR 37 (258)
T ss_pred EEEEECCCCcHHHHHHHHHHHc--CCEEEEEeC
Confidence 3789999888877778888764 677777654
No 44
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=33.91 E-value=2.1e+02 Score=21.61 Aligned_cols=47 Identities=21% Similarity=0.291 Sum_probs=33.7
Q ss_pred CeEEEEEECCCCHHHHHHHHHHHhcCCCCe-----EEEeeccccChHHHHHHHHHhh
Q 042841 49 QDVIIFIVGGTTYEESRSVALENANNSGIR-----FILGGSVILNSKRFLKDLEEAQ 100 (110)
Q Consensus 49 ~~iIVFviGGiTy~E~r~~~~ls~~~~~~~-----iiiGst~il~~~~fl~~L~~l~ 100 (110)
..+|+|+.-|..+.+-.+-+.+.+. .+.. |=+|... =.||+.|..|.
T Consensus 105 P~~VlFiTDG~~~~~~~~~~~i~~a-s~~pifwqFVgiG~~~----f~fL~kLD~l~ 156 (200)
T PF10138_consen 105 PALVLFITDGGPDDRRAIEKLIREA-SDEPIFWQFVGIGDSN----FGFLEKLDDLA 156 (200)
T ss_pred CeEEEEEecCCccchHHHHHHHHhc-cCCCeeEEEEEecCCc----chHHHHhhccC
Confidence 5799999999999886555555553 3333 3377777 78888888873
No 45
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=33.79 E-value=1.4e+02 Score=23.76 Aligned_cols=43 Identities=26% Similarity=0.346 Sum_probs=29.0
Q ss_pred EEEEEECCC-CHHHHHHHHHHHhcCCCCeEEEeecccc---ChHHHHHHHHH
Q 042841 51 VIIFIVGGT-TYEESRSVALENANNSGIRFILGGSVIL---NSKRFLKDLEE 98 (110)
Q Consensus 51 iIVFviGGi-Ty~E~r~~~~ls~~~~~~~iiiGst~il---~~~~fl~~L~~ 98 (110)
+|+|-.||+ |.+.++.+.+. |.+-+.-|+.|. +|....+.+.+
T Consensus 197 VV~iAeGGI~Tpena~~v~e~-----GAdgVaVGSAI~~a~dP~~~tk~f~~ 243 (283)
T cd04727 197 VVNFAAGGVATPADAALMMQL-----GADGVFVGSGIFKSENPEKRARAIVE 243 (283)
T ss_pred eEEEEeCCCCCHHHHHHHHHc-----CCCEEEEcHHhhcCCCHHHHHHHHHH
Confidence 445899999 99999887753 444455566775 46655555544
No 46
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=33.44 E-value=95 Score=20.95 Aligned_cols=48 Identities=15% Similarity=0.102 Sum_probs=27.5
Q ss_pred EEEEECCCC----HHHHHHHHHHHhcC--CCCeEEEeeccccChHHHHHHHHHh
Q 042841 52 IIFIVGGTT----YEESRSVALENANN--SGIRFILGGSVILNSKRFLKDLEEA 99 (110)
Q Consensus 52 IVFviGGiT----y~E~r~~~~ls~~~--~~~~iiiGst~il~~~~fl~~L~~l 99 (110)
.+++.||.+ ++|+..++++.... +..+|++-....-|-++......-+
T Consensus 37 ~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~~~~I~~e~~s~~T~ena~~~~~~~ 90 (150)
T cd06259 37 KLIVSGGQGPGEGYSEAEAMARYLIELGVPAEAILLEDRSTNTYENARFSAELL 90 (150)
T ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHcCCCHHHeeecCCCCCHHHHHHHHHHHH
Confidence 344577764 56887777766541 1245666666666666555444433
No 47
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=32.93 E-value=1.6e+02 Score=23.67 Aligned_cols=44 Identities=25% Similarity=0.339 Sum_probs=29.4
Q ss_pred EEEEEECCC-CHHHHHHHHHHHhcCCCCeEEEeecccc---ChHHHHHHHHHh
Q 042841 51 VIIFIVGGT-TYEESRSVALENANNSGIRFILGGSVIL---NSKRFLKDLEEA 99 (110)
Q Consensus 51 iIVFviGGi-Ty~E~r~~~~ls~~~~~~~iiiGst~il---~~~~fl~~L~~l 99 (110)
+|-|..||+ |.+.++.+.++ |.+=+.-|+.|. +|....+.+.+.
T Consensus 206 VV~~AeGGI~TPedaa~vme~-----GAdgVaVGSaI~ks~dP~~~akafv~a 253 (293)
T PRK04180 206 VVNFAAGGIATPADAALMMQL-----GADGVFVGSGIFKSGDPEKRARAIVEA 253 (293)
T ss_pred EEEEEeCCCCCHHHHHHHHHh-----CCCEEEEcHHhhcCCCHHHHHHHHHHH
Confidence 445899999 99999887764 333344455664 777666666554
No 48
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=32.65 E-value=1.5e+02 Score=23.20 Aligned_cols=55 Identities=24% Similarity=0.250 Sum_probs=37.4
Q ss_pred hHHHHHHHHHcCCCC------CCCCcccCCCCCCCCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCeEEE
Q 042841 18 LLFQTMESIIKGRLR------DVDYPFLGNHFQQGRPQDVIIFIVGGTTYEESRSVALENANNSGIRFIL 81 (110)
Q Consensus 18 ~l~~ii~~l~~~~l~------~~~fp~~~~~~~r~~~~~iIVFviGGiTy~E~r~~~~ls~~~~~~~iii 81 (110)
.++++++.|...++. ++.||+-+.... . .-=|--|-+|++.+.+.+++ .+++||=
T Consensus 18 ~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~-~-------~~~~~yT~~ei~ei~~yA~~-~gI~vIP 78 (301)
T cd06565 18 YLKKLLRLLALLGANGLLLYYEDTFPYEGEPEV-G-------RMRGAYTKEEIREIDDYAAE-LGIEVIP 78 (301)
T ss_pred HHHHHHHHHHHcCCCEEEEEEecceecCCCccc-c-------cCCCCcCHHHHHHHHHHHHH-cCCEEEe
Confidence 478888888887764 467776432110 0 01234699999999999986 7888875
No 49
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit. This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.
Probab=32.05 E-value=1.1e+02 Score=21.82 Aligned_cols=24 Identities=8% Similarity=0.116 Sum_probs=19.5
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhc
Q 042841 50 DVIIFIVGGTTYEESRSVALENAN 73 (110)
Q Consensus 50 ~iIVFviGGiTy~E~r~~~~ls~~ 73 (110)
-=|++|-|.+|-.+...++++-++
T Consensus 58 aDvllVtG~vt~~~~~~l~~~~e~ 81 (145)
T TIGR01957 58 ADVMIVAGTVTKKMAPALRRLYDQ 81 (145)
T ss_pred ceEEEEecCCcHHHHHHHHHHHHh
Confidence 447899999999998888886654
No 50
>PRK07035 short chain dehydrogenase; Provisional
Probab=31.64 E-value=1.9e+02 Score=20.75 Aligned_cols=43 Identities=12% Similarity=0.168 Sum_probs=28.6
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHH
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDL 96 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L 96 (110)
.++|.||.+.-=...++.+.+. +.+|++-+.+--....+.+++
T Consensus 10 ~vlItGas~gIG~~l~~~l~~~--G~~Vi~~~r~~~~~~~~~~~~ 52 (252)
T PRK07035 10 IALVTGASRGIGEAIAKLLAQQ--GAHVIVSSRKLDGCQAVADAI 52 (252)
T ss_pred EEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHH
Confidence 4788999988888888888874 677777665433333344443
No 51
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=31.57 E-value=2.6e+02 Score=22.00 Aligned_cols=57 Identities=11% Similarity=0.020 Sum_probs=36.9
Q ss_pred hHHHHHHHHHcCCCCCCCCcccCCCCCCCCCCeEEEEEECC--CCHHHHHHHHHHHhc--CCCCeEEEe
Q 042841 18 LLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGG--TTYEESRSVALENAN--NSGIRFILG 82 (110)
Q Consensus 18 ~l~~ii~~l~~~~l~~~~fp~~~~~~~r~~~~~iIVFviGG--iTy~E~r~~~~ls~~--~~~~~iiiG 82 (110)
.+...+++.+++.|... .+ -..-++++|.|.|| ++..|+..+.++-++ .++.+|+.|
T Consensus 224 ~~~~a~~~Al~~pll~~----~~----~~~A~~~Lv~i~g~~~l~~~e~~~~~~~i~~~~~~~~~i~~G 284 (303)
T cd02191 224 RATEAVRKAALGPLLLP----CE----IEGAEGALLVMAGPPDLNLKEIERVRKWLEEQTGESATVRGG 284 (303)
T ss_pred HHHHHHHHHHhCCCCCC----CC----cccCCEEEEEEECCCCCCHHHHHHHHHHHHHHcCCCCeEEEe
Confidence 45666677776654221 00 12347899999998 889999998877543 235677766
No 52
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=31.44 E-value=75 Score=23.85 Aligned_cols=42 Identities=12% Similarity=0.199 Sum_probs=26.7
Q ss_pred EEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHH
Q 042841 51 VIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLE 97 (110)
Q Consensus 51 iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~ 97 (110)
+=||-+||+|-+.+..+.+. |-+-+-....|.+..+.-+...
T Consensus 165 iPvvAIGGI~~~n~~~~~~~-----GA~giAvisai~~~~dp~~a~~ 206 (221)
T PRK06512 165 IPCIVQAGSDLASAVEVAET-----GAEFVALERAVFDAHDPPLAVA 206 (221)
T ss_pred CCEEEEeCCCHHHHHHHHHh-----CCCEEEEhHHhhCCCCHHHHHH
Confidence 44899999999999887754 3444444555555444333333
No 53
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=30.56 E-value=95 Score=27.65 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=39.4
Q ss_pred CCeEEEEEEC---------CCCHHHHHHHHHHHhc-------CCCCeEEEeeccccC-hHHHHHHHHHhhh
Q 042841 48 PQDVIIFIVG---------GTTYEESRSVALENAN-------NSGIRFILGGSVILN-SKRFLKDLEEAQR 101 (110)
Q Consensus 48 ~~~iIVFviG---------GiTy~E~r~~~~ls~~-------~~~~~iiiGst~il~-~~~fl~~L~~l~~ 101 (110)
.-+++|++.= |++.+++|.+.+.... ....+++.||.-++. |+++...+.++.+
T Consensus 407 g~~~~illADwhA~lN~k~~G~l~~I~~~~~y~~~~~~a~G~~~~v~fv~~sd~~~~~~~~Yw~~v~~ia~ 477 (682)
T PTZ00348 407 DGTVTLVLPDWSAVASDEITGEEKDISAALEVNCALLKAYGLPSEVKIVRENEVILGNPNDFWVSVIGIAR 477 (682)
T ss_pred CCeEEEEeehhHHHhcCccCCCHHHHHHHHHHHHHHHHHcCCCCCcEEEEchHhhhcCchhHHHHHHHHHH
Confidence 3467777654 7999999999887653 112899999998888 7677666666543
No 54
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.03 E-value=1.5e+02 Score=18.87 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=37.7
Q ss_pred CCeEEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHh
Q 042841 48 PQDVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEA 99 (110)
Q Consensus 48 ~~~iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l 99 (110)
.-++||++.+=++..-+..+.+.+++ .++.+++-- --+...|.+.|.++
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk-~~ip~~~~~--~~~~~~l~~~l~~~ 96 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKK-YGIPIIYSR--SRGVSSLERALERL 96 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHH-cCCcEEEEC--CCCHHHHHHHHHhh
Confidence 45899999999999999999999996 788888753 22444666666543
No 55
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=29.57 E-value=1.7e+02 Score=21.92 Aligned_cols=49 Identities=29% Similarity=0.349 Sum_probs=37.6
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHhhh
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQR 101 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l~~ 101 (110)
-|||=||.+..|+-....-.- +++-+++.=.-.+-|-...++.+.+++-
T Consensus 105 aiFIGGg~~i~~ile~~~~~l-~~ggrlV~naitlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 105 AIFIGGGGNIEEILEAAWERL-KPGGRLVANAITLETLAKALEALEQLGG 153 (187)
T ss_pred EEEECCCCCHHHHHHHHHHHc-CcCCeEEEEeecHHHHHHHHHHHHHcCC
Confidence 489999999999876554433 3677888888788888888888888765
No 56
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=29.41 E-value=2.2e+02 Score=20.61 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=13.4
Q ss_pred EEEECCCCHHHHHHHHHHHhcCCCCeEE
Q 042841 53 IFIVGGTTYEESRSVALENANNSGIRFI 80 (110)
Q Consensus 53 VFviGGiTy~E~r~~~~ls~~~~~~~ii 80 (110)
||++||---.=.+++..+.++.++.+|.
T Consensus 51 vfllG~~~~v~~~~~~~l~~~yP~l~i~ 78 (177)
T TIGR00696 51 IFLYGGKPDVLQQLKVKLIKEYPKLKIV 78 (177)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCCCEEE
Confidence 5555554444344444554444455543
No 57
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=28.86 E-value=1.4e+02 Score=22.81 Aligned_cols=45 Identities=11% Similarity=0.206 Sum_probs=29.5
Q ss_pred CeEEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeecc-ccC----hHHHHHHHHH
Q 042841 49 QDVIIFIVGGTTYEESRSVALENANNSGIRFILGGSV-ILN----SKRFLKDLEE 98 (110)
Q Consensus 49 ~~iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~-il~----~~~fl~~L~~ 98 (110)
-.+.+-|=||++-+-++.+. + .|.++++.|++ +.. +.+.++.|++
T Consensus 168 ~~~~IeVDGGI~~~~i~~~~---~--aGad~~V~Gss~iF~~~~d~~~~i~~l~~ 217 (229)
T PRK09722 168 LEYLIEVDGSCNQKTYEKLM---E--AGADVFIVGTSGLFNLDEDIDEAWDIMTA 217 (229)
T ss_pred CCeEEEEECCCCHHHHHHHH---H--cCCCEEEEChHHHcCCCCCHHHHHHHHHH
Confidence 36889999999977665544 3 47788876654 764 3344444443
No 58
>PRK07775 short chain dehydrogenase; Provisional
Probab=28.34 E-value=2e+02 Score=21.29 Aligned_cols=32 Identities=16% Similarity=0.177 Sum_probs=24.2
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEeecc
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGGSV 85 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~ 85 (110)
.++|.||..+-=...++.|.++ |.+|++.+.+
T Consensus 12 ~vlVtGa~g~iG~~la~~L~~~--G~~V~~~~r~ 43 (274)
T PRK07775 12 PALVAGASSGIGAATAIELAAA--GFPVALGARR 43 (274)
T ss_pred EEEEECCCchHHHHHHHHHHHC--CCEEEEEeCC
Confidence 5789999988888888888863 6777765543
No 59
>PRK03868 glucose-6-phosphate isomerase; Provisional
Probab=28.18 E-value=1.4e+02 Score=24.66 Aligned_cols=46 Identities=13% Similarity=0.078 Sum_probs=30.0
Q ss_pred EEEEEC-CCCHHHHHHHHHHHhcCC--CCeEEEeeccccChHHHHHHHHHh
Q 042841 52 IIFIVG-GTTYEESRSVALENANNS--GIRFILGGSVILNSKRFLKDLEEA 99 (110)
Q Consensus 52 IVFviG-GiTy~E~r~~~~ls~~~~--~~~iiiGst~il~~~~fl~~L~~l 99 (110)
-|+++| |.||...++++++..... +.++.... =++|.+|.+.+..+
T Consensus 60 ~VV~iGIGGS~LG~~~l~~al~~~~~~~~~i~f~~--n~dp~~~~~~l~~~ 108 (410)
T PRK03868 60 NIVVIGIGGSSLGVKAIYSFLKNEKNNKKELHFLE--NTDPISINKTLSKI 108 (410)
T ss_pred EEEEEecChHHHHHHHHHHHHHhhccCCCcEEEEe--cCCHHHHHHHHhcC
Confidence 366777 999999999999654211 34554332 22588887777654
No 60
>PRK05867 short chain dehydrogenase; Provisional
Probab=27.84 E-value=2.3e+02 Score=20.47 Aligned_cols=32 Identities=16% Similarity=0.116 Sum_probs=21.7
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEeecc
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGGSV 85 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~ 85 (110)
.++|.||.+.-=...++.|.+. +.+|++.+.+
T Consensus 11 ~vlVtGas~gIG~~ia~~l~~~--G~~V~~~~r~ 42 (253)
T PRK05867 11 RALITGASTGIGKRVALAYVEA--GAQVAIAARH 42 (253)
T ss_pred EEEEECCCchHHHHHHHHHHHC--CCEEEEEcCC
Confidence 4678888777666666777763 6677776543
No 61
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=27.67 E-value=1.2e+02 Score=24.83 Aligned_cols=44 Identities=20% Similarity=0.344 Sum_probs=29.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHh
Q 042841 51 VIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEA 99 (110)
Q Consensus 51 iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l 99 (110)
+=|.+.||++-+.+..+. + .+.+.++.|+.|....++-+....+
T Consensus 163 iPI~a~GGI~~~n~~~~l---~--aGAdgv~vGsaI~~~~d~~~~~~~l 206 (430)
T PRK07028 163 IPIAVAGGLDAETAAKAV---A--AGADIVIVGGNIIKSADVTEAARKI 206 (430)
T ss_pred CcEEEECCCCHHHHHHHH---H--cCCCEEEEChHHcCCCCHHHHHHHH
Confidence 558899999976655443 2 3667777788888775554444433
No 62
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=27.59 E-value=2.1e+02 Score=21.96 Aligned_cols=47 Identities=21% Similarity=0.467 Sum_probs=38.9
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHhhh
Q 042841 50 DVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQR 101 (110)
Q Consensus 50 ~iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l~~ 101 (110)
.+.|-|=||++-+-++.+.+ .|-++++.|+.+-+..++.+.+..+..
T Consensus 169 ~~~IeVDGGI~~~t~~~~~~-----AGad~~VaGSalF~~~d~~~~i~~~~~ 215 (220)
T COG0036 169 DILIEVDGGINLETIKQLAA-----AGADVFVAGSALFGADDYKATIRELRG 215 (220)
T ss_pred CeEEEEeCCcCHHHHHHHHH-----cCCCEEEEEEEEeCCccHHHHHHHHHH
Confidence 88999999999988887654 378889988899999888777777654
No 63
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=27.59 E-value=2.3e+02 Score=22.36 Aligned_cols=52 Identities=17% Similarity=0.297 Sum_probs=38.0
Q ss_pred CCeEEEEEECCCC----HHHH------HHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHhhh
Q 042841 48 PQDVIIFIVGGTT----YEES------RSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQR 101 (110)
Q Consensus 48 ~~~iIVFviGGiT----y~E~------r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l~~ 101 (110)
++..+.++|||-| |.+. +.+..+.+. .+.++.| +|+-=||.++.+.|.++..
T Consensus 145 ~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~v-ttSRRTp~~~~~~L~~~~~ 206 (311)
T PF06258_consen 145 PRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAA-YGGSLLV-TTSRRTPPEAEAALRELLK 206 (311)
T ss_pred CCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHh-CCCeEEE-EcCCCCcHHHHHHHHHhhc
Confidence 5788899999765 5444 334455553 4567777 8999999999999998764
No 64
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=26.97 E-value=1.2e+02 Score=24.56 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=22.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccC
Q 042841 51 VIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILN 88 (110)
Q Consensus 51 iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~ 88 (110)
+=||-+||+|-+.+..+. + .|.+-+-.+..|.+
T Consensus 295 iPv~AiGGI~~~ni~~l~---~--~Ga~gVAvisaI~~ 327 (347)
T PRK02615 295 IPWFAIGGIDKSNIPEVL---Q--AGAKRVAVVRAIMG 327 (347)
T ss_pred CCEEEECCCCHHHHHHHH---H--cCCcEEEEeHHHhC
Confidence 348999999977666544 3 35555666666664
No 65
>PRK13723 conjugal transfer pilus assembly protein TraH; Provisional
Probab=26.85 E-value=47 Score=28.11 Aligned_cols=27 Identities=19% Similarity=0.333 Sum_probs=24.2
Q ss_pred CCCeEEEeeccccChHHHHHHHHHhhh
Q 042841 75 SGIRFILGGSVILNSKRFLKDLEEAQR 101 (110)
Q Consensus 75 ~~~~iiiGst~il~~~~fl~~L~~l~~ 101 (110)
.|+|++.||-+++|+++|++.++.+..
T Consensus 82 gGID~f~G~fSfin~~~lv~~~k~i~~ 108 (451)
T PRK13723 82 GGIDAYLGSFSFINGEQLQRFVKQIMS 108 (451)
T ss_pred CcccccccchhhcCHHHHHHHHHHHHH
Confidence 478999999999999999999988754
No 66
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=26.42 E-value=1.4e+02 Score=22.38 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=31.0
Q ss_pred eEEEEEEC-CCC-HHHHHHHHHHHhcCCC--CeEEE--eeccccChHHHHHHHHHh
Q 042841 50 DVIIFIVG-GTT-YEESRSVALENANNSG--IRFIL--GGSVILNSKRFLKDLEEA 99 (110)
Q Consensus 50 ~iIVFviG-GiT-y~E~r~~~~ls~~~~~--~~iii--Gst~il~~~~fl~~L~~l 99 (110)
++++-|.| |+. |.=...+++|.+...| +++++ ++..++++..+.+.+..+
T Consensus 1 ~i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~~~~~~~~~~~ 56 (234)
T TIGR02700 1 RIGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRMYGLWDDLREI 56 (234)
T ss_pred CeEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhhhhhHHHHHHH
Confidence 47788888 677 6767777888764123 45554 345667776544444444
No 67
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=26.30 E-value=1.3e+02 Score=22.41 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=26.7
Q ss_pred EEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHh
Q 042841 51 VIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEA 99 (110)
Q Consensus 51 iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l 99 (110)
+=||-+||+|-+-+..+.+. +.+=+-....|.+.++.-+...++
T Consensus 159 ~PV~AiGGI~~~ni~~l~~~-----Ga~GiAvisai~~~~d~~~~~~~l 202 (211)
T PRK03512 159 YPTVAIGGISLERAPAVLAT-----GVGSIAVVSAITQAADWRAATAQL 202 (211)
T ss_pred CCEEEECCCCHHHHHHHHHc-----CCCEEEEhhHhhCCCCHHHHHHHH
Confidence 45899999999888877643 333333344455544444444433
No 68
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=25.47 E-value=1.1e+02 Score=26.91 Aligned_cols=39 Identities=21% Similarity=0.455 Sum_probs=28.5
Q ss_pred EEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHh
Q 042841 51 VIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEA 99 (110)
Q Consensus 51 iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l 99 (110)
=+|-||||.+++|.- ..++ .+.+|+|| +|-.+++.|.+.
T Consensus 352 r~vsvigg~s~EEq~--fqls---~gceivia-----tPgrLid~Lenr 390 (673)
T KOG0333|consen 352 RTVSVIGGLSFEEQG--FQLS---MGCEIVIA-----TPGRLIDSLENR 390 (673)
T ss_pred eEEEEecccchhhhh--hhhh---ccceeeec-----CchHHHHHHHHH
Confidence 468899999999974 2232 47788876 788888877653
No 69
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.30 E-value=98 Score=22.80 Aligned_cols=22 Identities=41% Similarity=0.810 Sum_probs=16.9
Q ss_pred CeEEEEEEC---------CCCHHHHHHHHHH
Q 042841 49 QDVIIFIVG---------GTTYEESRSVALE 70 (110)
Q Consensus 49 ~~iIVFviG---------GiTy~E~r~~~~l 70 (110)
..-++|.+| -+||+|+++..|-
T Consensus 115 pnt~i~lignkadle~qrdv~yeeak~faee 145 (215)
T KOG0097|consen 115 PNTVIFLIGNKADLESQRDVTYEEAKEFAEE 145 (215)
T ss_pred CceEEEEecchhhhhhcccCcHHHHHHHHhh
Confidence 456778888 6899999986653
No 70
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=25.24 E-value=57 Score=25.48 Aligned_cols=34 Identities=24% Similarity=0.444 Sum_probs=26.1
Q ss_pred ECC--CCHHHHHHHHHHHhcCCCCeEEEeeccccChH
Q 042841 56 VGG--TTYEESRSVALENANNSGIRFILGGSVILNSK 90 (110)
Q Consensus 56 iGG--iTy~E~r~~~~ls~~~~~~~iiiGst~il~~~ 90 (110)
.|| .|.+|++++++++++ .+..+.+=|.++.+..
T Consensus 137 ~GG~~~s~~el~ai~~~a~~-~gl~lhmDGARl~~a~ 172 (290)
T PF01212_consen 137 AGGTVYSLEELRAISELARE-HGLPLHMDGARLANAA 172 (290)
T ss_dssp TTSB---HHHHHHHHHHHHH-HT-EEEEEETTHHHHH
T ss_pred CCCeeCCHHHHHHHHHHHHh-CceEEEEehhhHHHhh
Confidence 356 577899999999996 7899999999887765
No 71
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=25.15 E-value=2.7e+02 Score=20.08 Aligned_cols=33 Identities=12% Similarity=0.104 Sum_probs=22.4
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccc
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGGSVI 86 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~i 86 (110)
.+.|.||...-=...+..|.+. +.+|++.+.+-
T Consensus 4 ~ilItG~~~~IG~~la~~l~~~--g~~vi~~~r~~ 36 (259)
T PRK12384 4 VAVVIGGGQTLGAFLCHGLAEE--GYRVAVADINS 36 (259)
T ss_pred EEEEECCCcHHHHHHHHHHHHC--CCEEEEEECCH
Confidence 3678888877777777777763 66776665443
No 72
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=25.12 E-value=1.2e+02 Score=23.86 Aligned_cols=38 Identities=13% Similarity=0.328 Sum_probs=31.5
Q ss_pred EEECCCCHHHHHHHHHHHhcCCC--CeEEEeeccccChHH
Q 042841 54 FIVGGTTYEESRSVALENANNSG--IRFILGGSVILNSKR 91 (110)
Q Consensus 54 FviGGiTy~E~r~~~~ls~~~~~--~~iiiGst~il~~~~ 91 (110)
.|+=|++.+.+..+.+.+++..+ ..-+|||-++.-..+
T Consensus 169 vvItGCsH~GI~niv~~~~~~~g~rv~~ViGGFHL~~~~~ 208 (259)
T COG1237 169 VVITGCSHPGIVNIVEWAKERSGDRVKAVIGGFHLIGASE 208 (259)
T ss_pred EEEEcCCcccHHHHHHHHHHhccceeEEEeeeeccCCCcH
Confidence 56779999999999988876445 678899999998883
No 73
>PF13964 Kelch_6: Kelch motif
Probab=24.91 E-value=51 Score=18.20 Aligned_cols=10 Identities=30% Similarity=0.747 Sum_probs=8.2
Q ss_pred EEEECCCCHH
Q 042841 53 IFIVGGTTYE 62 (110)
Q Consensus 53 VFviGGiTy~ 62 (110)
|||+||-+-.
T Consensus 14 iyv~GG~~~~ 23 (50)
T PF13964_consen 14 IYVFGGYDNS 23 (50)
T ss_pred EEEECCCCCC
Confidence 7999998764
No 74
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=24.08 E-value=43 Score=23.88 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=14.3
Q ss_pred EEEEEECCCCHHHHHHHHHH
Q 042841 51 VIIFIVGGTTYEESRSVALE 70 (110)
Q Consensus 51 iIVFviGGiTy~E~r~~~~l 70 (110)
+=||.+||+|.+.+..+.+.
T Consensus 150 ~pv~AlGGI~~~~i~~l~~~ 169 (180)
T PF02581_consen 150 IPVYALGGITPENIPELREA 169 (180)
T ss_dssp SCEEEESS--TTTHHHHHHT
T ss_pred CCEEEEcCCCHHHHHHHHHc
Confidence 55999999999888877654
No 75
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=23.84 E-value=80 Score=26.89 Aligned_cols=41 Identities=10% Similarity=0.225 Sum_probs=32.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHhc--CCCCeEEEeeccccChHH
Q 042841 51 VIIFIVGGTTYEESRSVALENAN--NSGIRFILGGSVILNSKR 91 (110)
Q Consensus 51 iIVFviGGiTy~E~r~~~~ls~~--~~~~~iiiGst~il~~~~ 91 (110)
=+.---.++-|....+..|++.. ....-++||.++++||..
T Consensus 356 NVLLAEA~VPYd~v~eMdeIN~~F~~tDvalVIGANDvVNPaA 398 (462)
T PRK09444 356 NVLLAEAKVPYDIVLEMDEINDDFADTDTVLVIGANDTVNPAA 398 (462)
T ss_pred eeEEeecCCCHHHHHhHHhhccccccCCEEEEecCccCCCccc
Confidence 34555669999999999999875 345678999999999963
No 76
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=23.39 E-value=2.6e+02 Score=22.06 Aligned_cols=37 Identities=14% Similarity=0.275 Sum_probs=23.9
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccC
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGGSVILN 88 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~ 88 (110)
+++|+||-+=+--+.|++++++....-+.|-+-.=|.
T Consensus 212 ~miVIGg~~SsNT~kL~eia~~~~~~t~~Ie~~~el~ 248 (281)
T PF02401_consen 212 AMIVIGGKNSSNTRKLAEIAKEHGKPTYHIETADELD 248 (281)
T ss_dssp EEEEES-TT-HHHHHHHHHHHHCTTCEEEESSGGG--
T ss_pred EEEEecCCCCccHHHHHHHHHHhCCCEEEeCCccccC
Confidence 7889999999999999999986322444454444333
No 77
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=23.00 E-value=93 Score=22.60 Aligned_cols=47 Identities=17% Similarity=0.214 Sum_probs=28.4
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHhh
Q 042841 50 DVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQ 100 (110)
Q Consensus 50 ~iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l~ 100 (110)
.+.+ +.||++-+.- .+.++.+ .|-++++.|..|....+..+.+..+.
T Consensus 163 ~~~i-vdgGI~~~g~-~~~~~~~--aGad~iV~Gr~I~~~~d~~~~~~~l~ 209 (215)
T PRK13813 163 ELKI-ISPGIGAQGG-KAADAIK--AGADYVIVGRSIYNAADPREAAKAIN 209 (215)
T ss_pred CcEE-EeCCcCCCCC-CHHHHHH--cCCCEEEECcccCCCCCHHHHHHHHH
Confidence 3444 8899987530 1333333 36677888888986555555555553
No 78
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=22.92 E-value=52 Score=23.63 Aligned_cols=11 Identities=27% Similarity=0.860 Sum_probs=8.6
Q ss_pred CeEEEEEECCC
Q 042841 49 QDVIIFIVGGT 59 (110)
Q Consensus 49 ~~iIVFviGGi 59 (110)
..=|+|+|||.
T Consensus 97 ~~~i~F~IGGa 107 (157)
T PRK00103 97 RSDVAFVIGGA 107 (157)
T ss_pred CccEEEEEcCc
Confidence 34599999985
No 79
>COG1901 Uncharacterized conserved protein [Function unknown]
Probab=22.77 E-value=1.3e+02 Score=22.74 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=29.7
Q ss_pred EEEEEC---CCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHH
Q 042841 52 IIFIVG---GTTYEESRSVALENANNSGIRFILGGSVILNSKRF 92 (110)
Q Consensus 52 IVFviG---GiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~f 92 (110)
-+||+| |.|-++.+.+.+.+. +.|-+|-+.+++.+-+
T Consensus 146 p~FIlGDH~g~t~e~~k~L~r~~~----~~ISlGP~~lha~hci 185 (197)
T COG1901 146 PVFILGDHIGLTEEDEKLLERHAA----KKISLGPLSLHADHCI 185 (197)
T ss_pred ceEEeeCCCCCCHHHHHHHHHhhC----ceeEeCchHHHHHHHH
Confidence 489999 999999999887754 3589998888776544
No 80
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=22.46 E-value=1e+02 Score=19.66 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=19.9
Q ss_pred CCCCHHHHHHHHHHHhcCCCCeEEEe
Q 042841 57 GGTTYEESRSVALENANNSGIRFILG 82 (110)
Q Consensus 57 GGiTy~E~r~~~~ls~~~~~~~iiiG 82 (110)
-+.|.+|++.+.+++++ .+..+.+|
T Consensus 95 ~~~~~~~~~~l~~~a~~-~~~~~~Vg 119 (120)
T PF01408_consen 95 LALTLEEAEELVEAAKE-KGVKVMVG 119 (120)
T ss_dssp SSSSHHHHHHHHHHHHH-HTSCEEEE
T ss_pred CcCCHHHHHHHHHHHHH-hCCEEEEe
Confidence 46699999999999985 57767665
No 81
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=22.19 E-value=2.2e+02 Score=22.76 Aligned_cols=43 Identities=28% Similarity=0.390 Sum_probs=28.2
Q ss_pred EEEEEECCC-CHHHHHHHHHHHhcCCCCeEEEeecccc---ChHHHHHHHHH
Q 042841 51 VIIFIVGGT-TYEESRSVALENANNSGIRFILGGSVIL---NSKRFLKDLEE 98 (110)
Q Consensus 51 iIVFviGGi-Ty~E~r~~~~ls~~~~~~~iiiGst~il---~~~~fl~~L~~ 98 (110)
+|-|-.||+ |.+.+..+.++ |.+=+.-|+.|. +|....+.+.+
T Consensus 200 VV~fAiGGI~TPedAa~~mel-----GAdGVaVGSaI~ks~dP~~~akafv~ 246 (287)
T TIGR00343 200 VVNFAAGGVATPADAALMMQL-----GADGVFVGSGIFKSSNPEKLAKAIVE 246 (287)
T ss_pred EEEeccCCCCCHHHHHHHHHc-----CCCEEEEhHHhhcCCCHHHHHHHHHH
Confidence 445899999 99998887764 444344455665 56665555544
No 82
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=22.16 E-value=45 Score=24.57 Aligned_cols=45 Identities=11% Similarity=0.195 Sum_probs=29.8
Q ss_pred EEEEECCCCHHHHHHH--------HHHHhcCCCCeEEEeeccccChHHHHHHHHH
Q 042841 52 IIFIVGGTTYEESRSV--------ALENANNSGIRFILGGSVILNSKRFLKDLEE 98 (110)
Q Consensus 52 IVFviGGiTy~E~r~~--------~~ls~~~~~~~iiiGst~il~~~~fl~~L~~ 98 (110)
.+++++|+........ .++.+ .+.++++.|..|..+.+..+.+..
T Consensus 159 ~~~vtPGI~~~g~~~~dq~~~~~~~~~~~--~Gad~iVvGr~I~~~~d~~~~~~~ 211 (213)
T TIGR01740 159 FLILTPGIRLQSKGADDQQRVVTLEDAKE--AGADVIIVGRGIYAAEDPVEAAKR 211 (213)
T ss_pred ceEEeCCcCCCCCCcCCccccCCHHHHHH--cCCCEEEEChhhcCCCCHHHHHHH
Confidence 6799999987743222 34443 477888888888876665555544
No 83
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=22.10 E-value=55 Score=23.45 Aligned_cols=9 Identities=22% Similarity=0.770 Sum_probs=7.7
Q ss_pred EEEEEECCC
Q 042841 51 VIIFIVGGT 59 (110)
Q Consensus 51 iIVFviGGi 59 (110)
=++|+|||.
T Consensus 96 ~i~FvIGGa 104 (153)
T TIGR00246 96 DVTLLIGGP 104 (153)
T ss_pred eEEEEEcCC
Confidence 399999996
No 84
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=22.10 E-value=3e+02 Score=19.66 Aligned_cols=31 Identities=6% Similarity=0.004 Sum_probs=23.0
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEeec
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGGS 84 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst 84 (110)
.++|.||.++-=...+..|.+. +.+|++-+.
T Consensus 9 ~vlItGasg~iG~~la~~l~~~--G~~v~~~~r 39 (262)
T PRK13394 9 TAVVTGAASGIGKEIALELARA--GAAVAIADL 39 (262)
T ss_pred EEEEECCCChHHHHHHHHHHHC--CCeEEEEeC
Confidence 5778999888888888888763 667765543
No 85
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=21.70 E-value=52 Score=23.58 Aligned_cols=13 Identities=38% Similarity=0.871 Sum_probs=8.2
Q ss_pred CCCeEEEEEECCC
Q 042841 47 RPQDVIIFIVGGT 59 (110)
Q Consensus 47 ~~~~iIVFviGGi 59 (110)
....=|+|+|||.
T Consensus 95 ~g~~~i~F~IGG~ 107 (155)
T PF02590_consen 95 QGKSDIVFIIGGA 107 (155)
T ss_dssp TTS-EEEEEE-BT
T ss_pred cCCceEEEEEecC
Confidence 3456789999975
No 86
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=21.42 E-value=3.1e+02 Score=19.76 Aligned_cols=30 Identities=13% Similarity=0.224 Sum_probs=22.4
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEee
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGG 83 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGs 83 (110)
.++|.||.++-=...++.|.++ +.+|++.+
T Consensus 8 ~vlItGas~~iG~~ia~~l~~~--G~~v~~~~ 37 (257)
T PRK07067 8 VALLTGAASGIGEAVAERYLAE--GARVVIAD 37 (257)
T ss_pred EEEEeCCCchHHHHHHHHHHHc--CCEEEEEc
Confidence 4789999888877777888763 66766654
No 87
>PF13854 Kelch_5: Kelch motif
Probab=21.39 E-value=64 Score=17.46 Aligned_cols=9 Identities=44% Similarity=0.815 Sum_probs=7.7
Q ss_pred EEEECCCCH
Q 042841 53 IFIVGGTTY 61 (110)
Q Consensus 53 VFviGGiTy 61 (110)
+||.||.+.
T Consensus 17 iyi~GG~~~ 25 (42)
T PF13854_consen 17 IYIFGGYSG 25 (42)
T ss_pred EEEEcCccC
Confidence 789999984
No 88
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=21.26 E-value=1.9e+02 Score=21.63 Aligned_cols=45 Identities=11% Similarity=0.223 Sum_probs=27.7
Q ss_pred EEEEEECCCC-HHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHh
Q 042841 51 VIIFIVGGTT-YEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEA 99 (110)
Q Consensus 51 iIVFviGGiT-y~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l 99 (110)
+=|.+.||+. .++++.+.+. .-..|++|+..+-+|..+-+-....
T Consensus 75 ipv~~~GGi~s~~~~~~~l~~----Ga~~Viigt~~l~~p~~~~ei~~~~ 120 (253)
T PRK02083 75 IPLTVGGGIRSVEDARRLLRA----GADKVSINSAAVANPELISEAADRF 120 (253)
T ss_pred CCEEeeCCCCCHHHHHHHHHc----CCCEEEEChhHhhCcHHHHHHHHHc
Confidence 4478888988 5555554432 2345788888778886555444433
No 89
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=21.26 E-value=58 Score=17.99 Aligned_cols=7 Identities=43% Similarity=1.122 Sum_probs=6.3
Q ss_pred EEEECCC
Q 042841 53 IFIVGGT 59 (110)
Q Consensus 53 VFviGGi 59 (110)
+||+||.
T Consensus 14 iyv~GG~ 20 (49)
T PF07646_consen 14 IYVFGGY 20 (49)
T ss_pred EEEECCc
Confidence 7899998
No 90
>PRK14813 NADH dehydrogenase subunit B; Provisional
Probab=21.06 E-value=2.1e+02 Score=21.46 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=19.7
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhc
Q 042841 50 DVIIFIVGGTTYEESRSVALENAN 73 (110)
Q Consensus 50 ~iIVFviGGiTy~E~r~~~~ls~~ 73 (110)
-=|++|.|.+|..+...+.++-++
T Consensus 68 ADvllVtG~Vt~km~~~l~~~y~q 91 (189)
T PRK14813 68 SDLMIVAGTVTMKMAERVVRLYEQ 91 (189)
T ss_pred ceEEEEeccCchhhHHHHHHHHHh
Confidence 447889999999999998777654
No 91
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=20.55 E-value=80 Score=24.14 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHH
Q 042841 58 GTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDL 96 (110)
Q Consensus 58 GiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L 96 (110)
|-||.=.++++++.+ .|.+|++|--.-..-.+-.+.+
T Consensus 17 GKTy~ML~ea~~l~~--~G~DVViG~vethgR~et~~l~ 53 (211)
T PF02702_consen 17 GKTYAMLQEAHRLKE--QGVDVVIGYVETHGRPETEALL 53 (211)
T ss_dssp SHHHHHHHHHHHHHH--TT--EEEEE---TT-HHHHHHH
T ss_pred CHHHHHHHHHHHHHH--CCCCEEEEEecCCCcHHHHHHH
Confidence 779999999999987 4999999966555444433333
No 92
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=20.49 E-value=3.2e+02 Score=21.02 Aligned_cols=30 Identities=23% Similarity=0.119 Sum_probs=24.1
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEee
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGG 83 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGs 83 (110)
=|+|.||.-|-=...++.|.++ +.+|++-+
T Consensus 12 ~vLVtG~~GfIG~~l~~~L~~~--G~~V~~~~ 41 (353)
T PLN02896 12 TYCVTGATGYIGSWLVKLLLQR--GYTVHATL 41 (353)
T ss_pred EEEEECCCcHHHHHHHHHHHHC--CCEEEEEe
Confidence 4899999999999999999874 77777543
No 93
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=20.45 E-value=1.6e+02 Score=24.16 Aligned_cols=49 Identities=20% Similarity=0.240 Sum_probs=35.0
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhcCCCCeE--EEeeccccChHHHHHHHHHh
Q 042841 50 DVIIFIVGGTTYEESRSVALENANNSGIRF--ILGGSVILNSKRFLKDLEEA 99 (110)
Q Consensus 50 ~iIVFviGGiTy~E~r~~~~ls~~~~~~~i--iiGst~il~~~~fl~~L~~l 99 (110)
...+.++|.+|++|...+...+.. .+.++ =+||=.++.-..++.....+
T Consensus 59 ~~~~~~~~~a~~~ev~~~~~~~~~-~~~d~vIGVGGGk~iD~aK~~A~~~~~ 109 (360)
T COG0371 59 VVHVVFVGEASEEEVERLAAEAGE-DGADVVIGVGGGKTIDTAKAAAYRLGL 109 (360)
T ss_pred ceeeeecCccCHHHHHHHHHHhcc-cCCCEEEEecCcHHHHHHHHHHHHcCC
Confidence 667888999999999998876652 34444 46777777777776655443
No 94
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=20.18 E-value=61 Score=24.50 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=13.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHh
Q 042841 51 VIIFIVGGTTYEESRSVALENA 72 (110)
Q Consensus 51 iIVFviGGiTy~E~r~~~~ls~ 72 (110)
-||||+||=-=.---.|..+.+
T Consensus 9 ~IifVlGGPGsgKgTqC~kiv~ 30 (195)
T KOG3079|consen 9 PIIFVLGGPGSGKGTQCEKIVE 30 (195)
T ss_pred CEEEEEcCCCCCcchHHHHHHH
Confidence 4899999754444444455555
No 95
>PRK04302 triosephosphate isomerase; Provisional
Probab=20.17 E-value=2.2e+02 Score=20.96 Aligned_cols=47 Identities=17% Similarity=0.085 Sum_probs=28.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHhhh
Q 042841 51 VIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQR 101 (110)
Q Consensus 51 iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l~~ 101 (110)
+-|..-||++-.|.. .++.+ .+.+=++-|+.++.+.+|.+.+.++..
T Consensus 174 ~pvi~GggI~~~e~~--~~~~~--~gadGvlVGsa~l~~~~~~~~~~~~~~ 220 (223)
T PRK04302 174 VKVLCGAGISTGEDV--KAALE--LGADGVLLASGVVKAKDPEAALRDLVS 220 (223)
T ss_pred CEEEEECCCCCHHHH--HHHHc--CCCCEEEEehHHhCCcCHHHHHHHHHh
Confidence 445557778444333 22322 466656667778888888777776653
Done!