Query 042841
Match_columns 110
No_of_seqs 130 out of 713
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 17:40:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042841.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042841hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dn1_A NSEC1, syntaxin binding 99.9 2.1E-27 7.2E-32 198.3 10.6 103 4-106 465-592 (594)
2 3puk_A Syntaxin-binding protei 99.9 4.8E-27 1.6E-31 196.0 10.3 102 3-104 460-585 (592)
3 3c98_A Syntaxin-binding protei 99.9 8.1E-25 2.8E-29 181.8 10.4 100 5-104 480-602 (606)
4 1epu_A S-SEC1; parallel beta-s 99.9 1.2E-23 4E-28 174.3 12.0 97 5-101 470-590 (591)
5 2xhe_A UNC18; exocytosis, exoc 99.9 8.6E-24 3E-28 177.4 9.6 97 6-103 467-619 (650)
6 1mqs_A SLY1 protein, SLY1P; SM 99.9 1.8E-22 6.2E-27 170.0 7.4 101 5-105 548-667 (671)
7 1tqx_A D-ribulose-5-phosphate 65.9 6.4 0.00022 28.7 3.9 45 50-99 173-217 (227)
8 1h1y_A D-ribulose-5-phosphate 61.7 3.4 0.00012 29.5 1.7 45 50-99 173-217 (228)
9 1y0e_A Putative N-acetylmannos 60.9 16 0.00054 25.4 5.1 45 50-99 175-220 (223)
10 3cu2_A Ribulose-5-phosphate 3- 55.6 12 0.0004 27.5 3.7 46 50-99 187-232 (237)
11 1tqj_A Ribulose-phosphate 3-ep 53.0 6.8 0.00023 28.2 2.0 47 50-101 173-219 (230)
12 3ctl_A D-allulose-6-phosphate 52.4 11 0.00039 27.3 3.2 44 50-98 167-215 (231)
13 1yxy_A Putative N-acetylmannos 50.8 31 0.0011 24.1 5.3 45 50-99 186-231 (234)
14 2zbt_A Pyridoxal biosynthesis 50.5 32 0.0011 25.2 5.5 44 51-99 210-257 (297)
15 2v82_A 2-dehydro-3-deoxy-6-pho 50.2 25 0.00086 24.2 4.7 35 50-89 148-182 (212)
16 3ovp_A Ribulose-phosphate 3-ep 46.9 10 0.00035 27.4 2.2 43 50-97 169-214 (228)
17 1rpx_A Protein (ribulose-phosp 46.7 13 0.00046 26.1 2.8 46 50-100 179-224 (230)
18 2nv1_A Pyridoxal biosynthesis 44.1 37 0.0013 25.1 5.0 45 50-99 209-257 (305)
19 2fli_A Ribulose-phosphate 3-ep 41.9 15 0.0005 25.5 2.3 45 50-99 170-214 (220)
20 3o63_A Probable thiamine-phosp 38.7 12 0.00041 27.4 1.5 43 50-97 191-236 (243)
21 3f4w_A Putative hexulose 6 pho 38.5 17 0.00059 25.0 2.2 45 50-99 159-203 (211)
22 3inp_A D-ribulose-phosphate 3- 38.4 16 0.00054 27.0 2.1 45 50-99 195-239 (246)
23 1yad_A Regulatory protein TENI 35.5 23 0.0008 24.6 2.6 43 50-97 164-209 (221)
24 2x5n_A SPRPN10, 26S proteasome 34.9 1.1E+02 0.0038 21.0 6.2 50 48-100 106-159 (192)
25 4adt_A Pyridoxine biosynthetic 34.8 37 0.0013 25.7 3.7 45 50-99 209-257 (297)
26 3ajx_A 3-hexulose-6-phosphate 34.8 26 0.00087 24.0 2.6 45 50-99 158-202 (207)
27 2ki0_A DS119; beta-alpha-beta, 32.8 20 0.00067 18.7 1.3 25 58-83 11-35 (36)
28 1lqv_C Vitamin-K dependent pro 31.4 18 0.00063 19.0 1.0 10 59-68 22-31 (33)
29 1wa3_A 2-keto-3-deoxy-6-phosph 30.8 36 0.0012 23.2 2.8 44 50-98 150-198 (205)
30 3i1j_A Oxidoreductase, short c 30.6 1.1E+02 0.0038 20.8 5.5 44 52-97 16-59 (247)
31 3qiv_A Short-chain dehydrogena 30.6 1.3E+02 0.0045 20.6 6.0 31 52-84 11-41 (253)
32 3o26_A Salutaridine reductase; 30.6 92 0.0031 21.8 5.1 44 52-97 14-57 (311)
33 3ezl_A Acetoacetyl-COA reducta 30.2 1.3E+02 0.0046 20.6 6.1 46 51-98 14-60 (256)
34 3rkr_A Short chain oxidoreduct 29.9 1.1E+02 0.0037 21.3 5.4 32 52-85 31-62 (262)
35 3igs_A N-acetylmannosamine-6-p 28.8 90 0.0031 22.3 4.8 45 50-99 181-226 (232)
36 1xi3_A Thiamine phosphate pyro 28.5 31 0.0011 23.5 2.2 34 51-89 163-196 (215)
37 3q58_A N-acetylmannosamine-6-p 28.3 90 0.0031 22.3 4.7 45 50-99 181-226 (229)
38 3lyl_A 3-oxoacyl-(acyl-carrier 28.3 1.3E+02 0.0044 20.6 5.4 43 52-96 7-49 (247)
39 3jr2_A Hexulose-6-phosphate sy 27.7 20 0.00067 25.2 1.0 45 50-100 166-210 (218)
40 1j34_C Coagulation factor IX; 27.6 23 0.00077 20.0 1.0 12 59-70 23-34 (46)
41 3hxi_C Eukaryotic translation 26.9 16 0.00056 17.3 0.3 17 82-98 2-18 (21)
42 3l77_A Short-chain alcohol deh 26.8 1.5E+02 0.0051 20.0 6.0 43 52-96 4-46 (235)
43 3awd_A GOX2181, putative polyo 26.7 1.5E+02 0.0053 20.2 5.9 31 52-84 15-45 (260)
44 3sju_A Keto reductase; short-c 26.4 1.5E+02 0.0051 21.0 5.7 32 52-85 26-57 (279)
45 1to0_A Hypothetical UPF0247 pr 26.2 26 0.0009 24.5 1.4 10 50-59 101-110 (167)
46 3svt_A Short-chain type dehydr 25.3 1.5E+02 0.0052 20.8 5.5 32 52-85 13-44 (281)
47 1zzg_A Glucose-6-phosphate iso 25.3 1.2E+02 0.004 24.0 5.2 89 7-100 11-114 (415)
48 3tsm_A IGPS, indole-3-glycerol 25.0 63 0.0021 24.1 3.4 49 48-101 218-267 (272)
49 3f1l_A Uncharacterized oxidore 24.7 1.8E+02 0.006 20.1 6.1 32 52-85 14-45 (252)
50 3r1i_A Short-chain type dehydr 24.3 1.9E+02 0.0066 20.4 6.9 45 52-98 34-78 (276)
51 3ioy_A Short-chain dehydrogena 24.3 1.6E+02 0.0055 21.4 5.6 44 52-97 10-53 (319)
52 1ns5_A Hypothetical protein YB 24.3 27 0.00093 24.1 1.2 9 51-59 97-105 (155)
53 3h7a_A Short chain dehydrogena 23.8 1.9E+02 0.0064 20.1 6.9 45 52-98 9-53 (252)
54 1o6d_A Hypothetical UPF0247 pr 23.7 32 0.0011 24.0 1.4 9 51-59 96-104 (163)
55 3tjr_A Short chain dehydrogena 23.6 2E+02 0.0067 20.6 5.9 32 52-85 33-64 (301)
56 4ibo_A Gluconate dehydrogenase 23.2 1.5E+02 0.005 21.0 5.1 43 52-96 28-70 (271)
57 4fak_A Ribosomal RNA large sub 23.1 29 0.001 24.2 1.2 12 48-59 103-114 (163)
58 1jrj_A Exendin-4; Trp-CAGE, GL 23.1 61 0.0021 17.5 2.2 18 89-107 19-36 (39)
59 3h3e_A Uncharacterized protein 23.1 1.2E+02 0.004 22.3 4.6 36 54-89 175-212 (267)
60 3n74_A 3-ketoacyl-(acyl-carrie 23.0 1.9E+02 0.0064 19.9 5.6 31 52-84 11-41 (261)
61 3ucx_A Short chain dehydrogena 22.5 1.9E+02 0.0064 20.1 5.5 32 52-85 13-44 (264)
62 4fc7_A Peroxisomal 2,4-dienoyl 22.4 2.1E+02 0.0071 20.1 5.8 43 52-96 29-71 (277)
63 3pk0_A Short-chain dehydrogena 22.1 1.5E+02 0.0051 20.7 4.9 32 52-85 12-43 (262)
64 2tps_A Protein (thiamin phosph 22.0 36 0.0012 23.5 1.5 33 51-88 173-205 (227)
65 3gaf_A 7-alpha-hydroxysteroid 21.9 1.9E+02 0.0066 20.0 5.4 32 52-85 14-45 (256)
66 3nyw_A Putative oxidoreductase 21.8 2E+02 0.007 19.8 5.9 44 52-97 9-52 (250)
67 4fmw_A RNA (guanine-9-)-methyl 21.8 30 0.001 24.7 1.0 46 53-99 122-178 (197)
68 4gj1_A 1-(5-phosphoribosyl)-5- 21.7 1.9E+02 0.0064 20.7 5.4 44 53-100 78-122 (243)
69 4gmf_A Yersiniabactin biosynth 21.4 1.4E+02 0.0047 22.9 4.8 40 60-100 104-145 (372)
70 1yb1_A 17-beta-hydroxysteroid 21.2 2.2E+02 0.0074 19.9 6.0 31 52-84 33-63 (272)
71 3lf2_A Short chain oxidoreduct 21.1 2.2E+02 0.0074 19.8 6.0 32 52-85 10-41 (265)
72 1fmc_A 7 alpha-hydroxysteroid 20.9 1.8E+02 0.0062 19.6 5.1 31 52-84 13-43 (255)
73 1wma_A Carbonyl reductase [NAD 20.7 2E+02 0.007 19.4 5.4 33 52-85 6-38 (276)
74 3tfo_A Putative 3-oxoacyl-(acy 20.6 2E+02 0.0069 20.3 5.4 32 52-85 6-37 (264)
75 3ftp_A 3-oxoacyl-[acyl-carrier 20.4 2.1E+02 0.0071 20.2 5.4 44 52-97 30-73 (270)
76 3t4x_A Oxidoreductase, short c 20.2 2E+02 0.0068 20.0 5.3 44 52-97 12-55 (267)
No 1
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A
Probab=99.94 E-value=2.1e-27 Score=198.26 Aligned_cols=103 Identities=23% Similarity=0.449 Sum_probs=89.2
Q ss_pred ccCCccccc--eeccchHHHHHHHHHcCCCCCCCCcccCCCC----------CC-------------CCCCeEEEEEECC
Q 042841 4 GLKGVENVY--TQHQPLLFQTMESIIKGRLRDVDYPFLGNHF----------QQ-------------GRPQDVIIFIVGG 58 (110)
Q Consensus 4 ~~~gv~n~~--sr~~P~l~~ii~~l~~~~l~~~~fp~~~~~~----------~r-------------~~~~~iIVFviGG 58 (110)
..++++|+| |||+|.|+++++++++|+|+++.|||+.+.+ .| .+.+++||||+||
T Consensus 465 k~~~~e~~Y~lsr~~P~l~~ile~~~~~~L~~~~fP~~~~~~~~~~~~~~~s~r~~~w~~~~~~~~~~~~~riivFivGG 544 (594)
T 1dn1_A 465 KERISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFSTTAVSARYGHWHKNKAPGEYRSGPRLIIFILGG 544 (594)
T ss_dssp CCCCCSCCCTTCCCCCHHHHHHHHHHTTCSCTTTSCCSSCC--------------------------CCCCEEEEEEETC
T ss_pred ccCCCCccceeeccchHHHHHHHHHHhCCCCcccCCccCCCCCccccccccccccccccccCCccccccCCcEEEEEeCC
Confidence 345889999 6999999999999999999999999996431 11 1245789999999
Q ss_pred CCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHhhhccccC
Q 042841 59 TTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAKSS 106 (110)
Q Consensus 59 iTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l~~~~~~~ 106 (110)
+||+|+|++|++++...+++|+||||+|+||.+|+++|..|++++.+.
T Consensus 545 ~Ty~E~r~~~els~~~~~~~VilG~t~il~p~~Fl~~l~~l~~~~~~~ 592 (594)
T 1dn1_A 545 VSLNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLKKLNKTDEEI 592 (594)
T ss_dssp EEHHHHHHHHHHHHHHSSCEEEEEESSEECHHHHHHHHTTTTSCSSCC
T ss_pred ccHHHHHHHHHHHhhcCCceEEEeeCCcCCHHHHHHHHHHhCCCcccc
Confidence 999999999999987557999999999999999999999999877654
No 2
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A
Probab=99.94 E-value=4.8e-27 Score=196.03 Aligned_cols=102 Identities=24% Similarity=0.486 Sum_probs=86.1
Q ss_pred CccCCccccc--eeccchHHHHHHHHHcCCCCCCCCcccCCCC----------CC------------CCCCeEEEEEECC
Q 042841 3 RGLKGVENVY--TQHQPLLFQTMESIIKGRLRDVDYPFLGNHF----------QQ------------GRPQDVIIFIVGG 58 (110)
Q Consensus 3 ~~~~gv~n~~--sr~~P~l~~ii~~l~~~~l~~~~fp~~~~~~----------~r------------~~~~~iIVFviGG 58 (110)
|..++++|+| |||+|.++++++++++++|+++.|||+.+.+ .| .+++++||||+||
T Consensus 460 rk~~~~e~~Y~~Sr~~P~l~~ile~~~~g~L~~~~fP~~~~~~~~~~~~~~~s~r~~~w~~~~~~~~~~~~riiVFivGG 539 (592)
T 3puk_A 460 RKDRSAEETFQLSRWTPFIKDIMEDAIDNRLDSKEWPYCSRCPAVWNGSGAVSARQKPRTNYLELDRKNGSRLIIFVIGG 539 (592)
T ss_dssp CCCCCCCCGGGSCCCCCTTHHHHHHHHTCCCCTTTSCC--------------------CCCCCCCCCSCCSEEEEEEETC
T ss_pred cccCCCCcceeeeccchHHHHHHHHHHhCCCCcccCCccCCCCCCccCCccccccccccccCccccccCCCeEEEEEeCC
Confidence 3456789999 6999999999999999999999999986421 01 1246899999999
Q ss_pred CCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHhhhccc
Q 042841 59 TTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAK 104 (110)
Q Consensus 59 iTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l~~~~~ 104 (110)
+||+|+|++|++++...+++|+||||+|+||++|+++|..++++++
T Consensus 540 vTysE~r~~~els~~~~~~~vilG~T~i~np~~fl~~l~~l~~~~~ 585 (592)
T 3puk_A 540 ITYSEMRCAYEVSQAHKSCEVIIGSTHILTPRKLLDDIKMLNKSKD 585 (592)
T ss_dssp EEHHHHHHHHHHHHHCCSSEEEEEESSEECHHHHHHHHSSTTSCCC
T ss_pred cCHHHHHHHHHHHhhcCCceEEEeeCCcCCHHHHHHHHHHhCCccc
Confidence 9999999999999975569999999999999999999999998765
No 3
>3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A
Probab=99.91 E-value=8.1e-25 Score=181.83 Aligned_cols=100 Identities=22% Similarity=0.432 Sum_probs=87.2
Q ss_pred cCCccccceeccchHHHHHHHHHcCCCCCCCCcccCCCCC-----------------------CCCCCeEEEEEECCCCH
Q 042841 5 LKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQ-----------------------QGRPQDVIIFIVGGTTY 61 (110)
Q Consensus 5 ~~gv~n~~sr~~P~l~~ii~~l~~~~l~~~~fp~~~~~~~-----------------------r~~~~~iIVFviGGiTy 61 (110)
..+..+.||||.|.++++++++++++|+++.||++++... +..++++||||+||+||
T Consensus 480 ~~~~~~~~s~~~Pll~~lle~l~k~~L~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIVFvvGGvTy 559 (606)
T 3c98_A 480 ISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFSTTAVSARYGHWHKNKAPGEYRSGPRLIIFILGGVSL 559 (606)
T ss_dssp CCCCCCTTCCCCCHHHHHHHHHHTTCSCTTTSCCSSCC--------------------------CCCSEEEEEEETCEEH
T ss_pred CcccccceecchHHHHHHHHHHHhCCCCcccCcccCCCCcccccccccccccCCccccCCCCCCCCCCEEEEEEECCcCH
Confidence 4567788999999999999999999999999999975320 12357899999999999
Q ss_pred HHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHhhhccc
Q 042841 62 EESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAK 104 (110)
Q Consensus 62 ~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l~~~~~ 104 (110)
+|+|+++++++++.+++|+||||+|+||++|+++|.+|+++.+
T Consensus 560 ~E~~~l~~ls~~~~~~~viiGsT~Iln~~~fl~~L~~L~k~~~ 602 (606)
T 3c98_A 560 NEMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLKKLNKTDE 602 (606)
T ss_dssp HHHHHHHHHHHHHSSCEEEEEESSEECHHHHHHHHTTTTSCCS
T ss_pred HHHHHHHHHHHHcCCcEEEEEeCCeeCHHHHHHHHHHhCCCch
Confidence 9999999999865678999999999999999999999998654
No 4
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A
Probab=99.90 E-value=1.2e-23 Score=174.26 Aligned_cols=97 Identities=27% Similarity=0.437 Sum_probs=84.9
Q ss_pred cCCccccceeccchHHHHHHHHHcCCCCCCCCcccCCCCC-----------------------CCCCCeEEEEEECCCCH
Q 042841 5 LKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQ-----------------------QGRPQDVIIFIVGGTTY 61 (110)
Q Consensus 5 ~~gv~n~~sr~~P~l~~ii~~l~~~~l~~~~fp~~~~~~~-----------------------r~~~~~iIVFviGGiTy 61 (110)
.+++.++|+||.|.+++++|++++++++++.||+++++.. ...++++|||||||+||
T Consensus 470 ~~~~~y~~s~~~Pl~~~ive~l~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~viVF~vGG~Ty 549 (591)
T 1epu_A 470 QADHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGPRPSCQQPVSVRYGHWHKDKGQASYKSGPRLIIFVVGGISY 549 (591)
T ss_dssp CSCCSCGGGCCCCHHHHHHHHHHTTCSCTTTSCBTTSCC-------------------------CCCCEEEEEEETCBCH
T ss_pred CCCccccccccchhHHHHHHHHhcCCCCcccCcccCCCCCccccCCccccccCcccCCCCccccCCCCeEEEEEECCCCH
Confidence 3567899999999999999999999999999999976420 01245699999999999
Q ss_pred HHHHHHHHHHhc-CCCCeEEEeeccccChHHHHHHHHHhhh
Q 042841 62 EESRSVALENAN-NSGIRFILGGSVILNSKRFLKDLEEAQR 101 (110)
Q Consensus 62 ~E~r~~~~ls~~-~~~~~iiiGst~il~~~~fl~~L~~l~~ 101 (110)
+|++++++++++ ..+++|+||||+|+||++|+++|..|++
T Consensus 550 ~E~~~l~~l~~~~~~~~~viigsT~i~n~~~fl~~l~~l~~ 590 (591)
T 1epu_A 550 SEMRSAYEVTQTAKNNWEVILGSTHILTPEGLLRDLRKISN 590 (591)
T ss_dssp HHHHHHHHHHTSSCSSCEEEEEESSBCCHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhhccCCCeEEEecCCcCCHHHHHHHHHHhcC
Confidence 999999999983 4689999999999999999999999876
No 5
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=99.90 E-value=8.6e-24 Score=177.43 Aligned_cols=97 Identities=21% Similarity=0.357 Sum_probs=84.1
Q ss_pred CCccccceeccchHHHHHHHHHcCCCCCCCCcccCCCCC-----------------------------------------
Q 042841 6 KGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQ----------------------------------------- 44 (110)
Q Consensus 6 ~gv~n~~sr~~P~l~~ii~~l~~~~l~~~~fp~~~~~~~----------------------------------------- 44 (110)
++.+++|+||.|.++++++++++++|+++.||+++++..
T Consensus 467 ~~~~yv~s~y~Pl~~rlve~l~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~w~~~~~~~~~~~~~ 546 (650)
T 2xhe_A 467 RDMPYVLSRWTPIVKDLMEYIATGQLDLESYPAVRDGPSVVQPKRASKSVEEDDDGPATSARKRGNWAKNKGNNRSLPST 546 (650)
T ss_dssp CCCCSTTCCCCCHHHHHHHHHTTTCSCTTTSCBSSCGGGSCCCC------------------------------------
T ss_pred cCCcceeccchHHHHHHHHHHhcCCCCcccCceeCCCCcccccccccccccccccccccccccccccccccccccccccc
Confidence 345889999999999999999999999999999864210
Q ss_pred ---------------CCCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHhhhcc
Q 042841 45 ---------------QGRPQDVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTA 103 (110)
Q Consensus 45 ---------------r~~~~~iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l~~~~ 103 (110)
..+++++||||+||+||+|+|++|++++. .+++|+||||+|+||++|+++|..+++++
T Consensus 547 ~~~~~~~g~~~~~~~~~~~~~viVF~iGGvTysEi~al~~ls~~-~~~~viigsT~Iln~~~fl~~l~~l~~~~ 619 (650)
T 2xhe_A 547 PSGVAVSGNGAAGAAESAKPKLFVFINGTVSYNEIRCAYEVSQS-SGYEVYIGAHNIATPAEFVELVSLLDKAD 619 (650)
T ss_dssp ---------------CCCSCEEEEEEEEEECHHHHHHHHHHHTT-SSSEEEEEEEEECCHHHHHHHHHTTTC--
T ss_pred ccccccccccccccccCCCCEEEEEEECCCCHHHHHHHHHHHhc-CCCEEEEeeCCcCCHHHHHHHHHHcCCCc
Confidence 02357899999999999999999999974 79999999999999999999999998754
No 6
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1
Probab=99.86 E-value=1.8e-22 Score=170.04 Aligned_cols=101 Identities=14% Similarity=0.349 Sum_probs=87.5
Q ss_pred cCCccccc-eeccchHHHHHHHHHcC-----C--CCCCCCcccCCCC---------CCCCCCeEEEEEECCCCHHHHHHH
Q 042841 5 LKGVENVY-TQHQPLLFQTMESIIKG-----R--LRDVDYPFLGNHF---------QQGRPQDVIIFIVGGTTYEESRSV 67 (110)
Q Consensus 5 ~~gv~n~~-sr~~P~l~~ii~~l~~~-----~--l~~~~fp~~~~~~---------~r~~~~~iIVFviGGiTy~E~r~~ 67 (110)
++||.|+| .++.|++++++++++++ + ++.+.||+++|+. .+.+++++|||||||+||+|++++
T Consensus 548 ~~~v~n~~P~~~~~~l~~ive~l~~~~~~~~k~~l~~~~y~~~~p~~~~~~~~~~~~~~~~~~viVFvVGG~Ty~E~~~l 627 (671)
T 1mqs_A 548 ISGIKKLLPEKKTIPITNVVDAIMDPLNSSQKNLETTDSYLYIDPKITRGSHTRKPKRQSYNKSLVFVVGGGNYLEYQNL 627 (671)
T ss_dssp HHHHHHTCCCCCCCHHHHHHHHHHCSTTSCHHHHHHHTTSEEECTTSSSCSSSCCCCCCCCSEEEEEEETCBCHHHHHHH
T ss_pred HHhHHhhCCCcccchHHHHHHHHHhccccccccCCCccCceeeCCCCcCCCCCCCcccCCCCeEEEEEECCccHHHHHHH
Confidence 45689999 89999999999999998 4 6678999998652 234569999999999999999999
Q ss_pred HHHHhcC--CCCeEEEeeccccChHHHHHHHHHhhhcccc
Q 042841 68 ALENANN--SGIRFILGGSVILNSKRFLKDLEEAQRTAKS 105 (110)
Q Consensus 68 ~~ls~~~--~~~~iiiGst~il~~~~fl~~L~~l~~~~~~ 105 (110)
++++++. .+++|+||||+|+||++|+++|..|++..-+
T Consensus 628 ~~l~~~~~~~~~~viiGsT~I~n~~~Fl~~l~~l~~~~~~ 667 (671)
T 1mqs_A 628 QEWAHSQLHNPKKVMYGSTAITTPAEFLNEISRLGASNSS 667 (671)
T ss_dssp HHHHTTCCSSCCEEEEEESSBCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhhccCCCceEEEeeccccCHHHHHHHHHHhCccccc
Confidence 9999862 4799999999999999999999999876433
No 7
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=65.92 E-value=6.4 Score=28.68 Aligned_cols=45 Identities=22% Similarity=0.322 Sum_probs=32.3
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHh
Q 042841 50 DVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEA 99 (110)
Q Consensus 50 ~iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l 99 (110)
.+-|-|.||++-+.+..+.+ .|-++++.|+.|.+..+.-+.+..+
T Consensus 173 ~~~I~VdGGI~~~ti~~~~~-----aGAd~~V~GsaIf~~~d~~~~i~~l 217 (227)
T 1tqx_A 173 NLNIQVDGGLNIETTEISAS-----HGANIIVAGTSIFNAEDPKYVIDTM 217 (227)
T ss_dssp TCEEEEESSCCHHHHHHHHH-----HTCCEEEESHHHHTCSSHHHHHHHH
T ss_pred CCeEEEECCCCHHHHHHHHH-----cCCCEEEEeHHHhCCCCHHHHHHHH
Confidence 57789999999886665543 3778999999998754444444444
No 8
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=61.71 E-value=3.4 Score=29.49 Aligned_cols=45 Identities=18% Similarity=0.182 Sum_probs=30.6
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHh
Q 042841 50 DVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEA 99 (110)
Q Consensus 50 ~iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l 99 (110)
.+-+++.||+|-+.+..+ .+ .+.++++.|+.|.+..+.-+.+..+
T Consensus 173 ~~pi~v~GGI~~~ni~~~---~~--aGaD~vvvGsai~~~~d~~~~~~~l 217 (228)
T 1h1y_A 173 SLDIEVDGGLGPSTIDVA---AS--AGANCIVAGSSIFGAAEPGEVISAL 217 (228)
T ss_dssp TSEEEEESSCSTTTHHHH---HH--HTCCEEEESHHHHTSSCHHHHHHHH
T ss_pred CCCEEEECCcCHHHHHHH---HH--cCCCEEEECHHHHCCCCHHHHHHHH
Confidence 456899999998655443 33 2789999999998765444444443
No 9
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=60.91 E-value=16 Score=25.41 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=34.1
Q ss_pred eEEEEEECCC-CHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHh
Q 042841 50 DVIIFIVGGT-TYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEA 99 (110)
Q Consensus 50 ~iIVFviGGi-Ty~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l 99 (110)
.+-|...||+ |.+.++.+.+ .|.+.++-|+.+.+|....+.+.+.
T Consensus 175 ~ipvia~GGI~~~~~~~~~~~-----~Gad~v~vG~al~~p~~~~~~~~~~ 220 (223)
T 1y0e_A 175 DAKVIAEGNVITPDMYKRVMD-----LGVHCSVVGGAITRPKEITKRFVQV 220 (223)
T ss_dssp CSEEEEESSCCSHHHHHHHHH-----TTCSEEEECHHHHCHHHHHHHHHHT
T ss_pred CCCEEEecCCCCHHHHHHHHH-----cCCCEEEEChHHcCcHHHHHHHHHH
Confidence 4678999999 8888877654 2566666678899998888877653
No 10
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=55.60 E-value=12 Score=27.46 Aligned_cols=46 Identities=20% Similarity=0.336 Sum_probs=32.1
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHh
Q 042841 50 DVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEA 99 (110)
Q Consensus 50 ~iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l 99 (110)
.+.|.+.||+|-+.+..+. +-..|.++++.|+.|.+. +.-+.+..+
T Consensus 187 ~~~I~vdGGI~~~~~~~~~---~~~aGad~~VvGSaIf~~-d~~~~~~~l 232 (237)
T 3cu2_A 187 EKLINIDGSMTLELAKYFK---QGTHQIDWLVSGSALFSG-ELKTNLKVW 232 (237)
T ss_dssp GCEEEEESSCCHHHHHHHH---HSSSCCCCEEECGGGGSS-CHHHHHHHH
T ss_pred CceEEEECCcCHHHHHHHH---HhCCCCcEEEEeeHHhCC-CHHHHHHHH
Confidence 5779999999988777654 301377888889999965 444444444
No 11
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=52.97 E-value=6.8 Score=28.22 Aligned_cols=47 Identities=21% Similarity=0.376 Sum_probs=33.3
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHhhh
Q 042841 50 DVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQR 101 (110)
Q Consensus 50 ~iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l~~ 101 (110)
.+-|.+.||++-+.+..+. + .+-++++.|+.|.+..+.-+.+..+..
T Consensus 173 ~~~I~v~GGI~~~~~~~~~---~--aGad~vvvGSai~~a~d~~~~~~~l~~ 219 (230)
T 1tqj_A 173 DPWIEVDGGLKPNNTWQVL---E--AGANAIVAGSAVFNAPNYAEAIAGVRN 219 (230)
T ss_dssp CCEEEEESSCCTTTTHHHH---H--HTCCEEEESHHHHTSSCHHHHHHHHHT
T ss_pred CCcEEEECCcCHHHHHHHH---H--cCCCEEEECHHHHCCCCHHHHHHHHHH
Confidence 5678999999986666543 3 267888888999876666556665543
No 12
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=52.39 E-value=11 Score=27.34 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=31.5
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhcCCCCeEEEee-ccccCh----HHHHHHHHH
Q 042841 50 DVIIFIVGGTTYEESRSVALENANNSGIRFILGG-SVILNS----KRFLKDLEE 98 (110)
Q Consensus 50 ~iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGs-t~il~~----~~fl~~L~~ 98 (110)
.+.|-|-||++-+.+..+.+ .|-++++.| +.|.+. .+-+++|.+
T Consensus 167 ~~~I~VdGGI~~~~~~~~~~-----aGAd~~V~G~saif~~~d~~~~~~~~l~~ 215 (231)
T 3ctl_A 167 EYEIEVDGSCNQATYEKLMA-----AGADVFIVGTSGLFNHAENIDEAWRIMTA 215 (231)
T ss_dssp CCEEEEESCCSTTTHHHHHH-----HTCCEEEECTTTTGGGCSSHHHHHHHHHH
T ss_pred CceEEEECCcCHHHHHHHHH-----cCCCEEEEccHHHhCCCCcHHHHHHHHHH
Confidence 57799999999887776654 267888888 888864 344555543
No 13
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=50.85 E-value=31 Score=24.13 Aligned_cols=45 Identities=22% Similarity=0.295 Sum_probs=33.4
Q ss_pred eEEEEEECCCC-HHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHh
Q 042841 50 DVIIFIVGGTT-YEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEA 99 (110)
Q Consensus 50 ~iIVFviGGiT-y~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l 99 (110)
.+-|...||++ .+.++.+.+ .|.+.++-|+.+..|....+++.+.
T Consensus 186 ~ipvia~GGI~s~~~~~~~~~-----~Gad~v~vGsal~~p~~~~~~l~~~ 231 (234)
T 1yxy_A 186 GIAVIAEGKIHSPEEAKKIND-----LGVAGIVVGGAITRPKEIAERFIEA 231 (234)
T ss_dssp TCCEEEESCCCSHHHHHHHHT-----TCCSEEEECHHHHCHHHHHHHHHHH
T ss_pred CCCEEEECCCCCHHHHHHHHH-----CCCCEEEEchHHhChHHHHHHHHHH
Confidence 46788999998 877776543 3667677777888888888777653
No 14
>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*
Probab=50.48 E-value=32 Score=25.18 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=30.4
Q ss_pred EEEEEECCC-CHHHHHHHHHHHhcCCCCeEEEeecccc---ChHHHHHHHHHh
Q 042841 51 VIIFIVGGT-TYEESRSVALENANNSGIRFILGGSVIL---NSKRFLKDLEEA 99 (110)
Q Consensus 51 iIVFviGGi-Ty~E~r~~~~ls~~~~~~~iiiGst~il---~~~~fl~~L~~l 99 (110)
+|+++.||+ |-+.++.+.+ .+.+.++-|+.+. +|...++++.+.
T Consensus 210 vi~~a~GGI~~~e~i~~~~~-----aGadgvvvGsai~~~~dp~~~~~~l~~~ 257 (297)
T 2zbt_A 210 VVNFAAGGIATPADAALMMH-----LGMDGVFVGSGIFKSGDPRKRARAIVRA 257 (297)
T ss_dssp SCEEBCSSCCSHHHHHHHHH-----TTCSEEEECGGGGGSSCHHHHHHHHHHH
T ss_pred cEEEeeCCCCCHHHHHHHHH-----cCCCEEEEchHHhCCCCHHHHHHHHHHH
Confidence 556799999 8887776654 2666666677776 566666666543
No 15
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=50.16 E-value=25 Score=24.22 Aligned_cols=35 Identities=29% Similarity=0.270 Sum_probs=25.1
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccCh
Q 042841 50 DVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNS 89 (110)
Q Consensus 50 ~iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~ 89 (110)
.+-|+..||++-+.++.+.+ .|.+.+..|+.+...
T Consensus 148 ~ipvia~GGI~~~~i~~~~~-----~Ga~gv~vGsai~~~ 182 (212)
T 2v82_A 148 DIAVFAVGGVTPENLAQWID-----AGCAGAGLGSDLYRA 182 (212)
T ss_dssp TCEEEEESSCCTTTHHHHHH-----HTCSEEEECTTTCCT
T ss_pred CCeEEEeCCCCHHHHHHHHH-----cCCCEEEEChHHhCC
Confidence 57899999999665555543 266667777888775
No 16
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=46.87 E-value=10 Score=27.41 Aligned_cols=43 Identities=26% Similarity=0.395 Sum_probs=29.6
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChH---HHHHHHH
Q 042841 50 DVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSK---RFLKDLE 97 (110)
Q Consensus 50 ~iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~---~fl~~L~ 97 (110)
.+-+-|.||++-+-++.+. + .|-++++.|+.|.... .-++++.
T Consensus 169 ~~~I~VdGGI~~~t~~~~~---~--aGAd~~VvGsaIf~a~dp~~~~~~l~ 214 (228)
T 3ovp_A 169 SLDIEVDGGVGPDTVHKCA---E--AGANMIVSGSAIMRSEDPRSVINLLR 214 (228)
T ss_dssp TCEEEEESSCSTTTHHHHH---H--HTCCEEEESHHHHTCSCHHHHHHHHH
T ss_pred CCCEEEeCCcCHHHHHHHH---H--cCCCEEEEeHHHhCCCCHHHHHHHHH
Confidence 4668999999976666544 3 3778888888888644 4444444
No 17
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=46.68 E-value=13 Score=26.07 Aligned_cols=46 Identities=15% Similarity=0.330 Sum_probs=30.2
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHhh
Q 042841 50 DVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQ 100 (110)
Q Consensus 50 ~iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l~ 100 (110)
.+-+++.||++-+.++.+. + .+-+.++-|+.|.++.+.-+.+..+.
T Consensus 179 ~~pi~v~GGI~~~n~~~~~---~--aGad~vvvgSaI~~a~dp~~a~~~l~ 224 (230)
T 1rpx_A 179 NPWIEVDGGVGPKNAYKVI---E--AGANALVAGSAVFGAPDYAEAIKGIK 224 (230)
T ss_dssp CCEEEEESSCCTTTHHHHH---H--HTCCEEEESHHHHTSSCHHHHHHHHH
T ss_pred CceEEEECCCCHHHHHHHH---H--cCCCEEEEChhhhCCCCHHHHHHHHH
Confidence 4668899999965555433 2 25566777788887766665655553
No 18
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Probab=44.15 E-value=37 Score=25.15 Aligned_cols=45 Identities=31% Similarity=0.415 Sum_probs=30.1
Q ss_pred eEEEEEECCC-CHHHHHHHHHHHhcCCCCeEEEeecccc---ChHHHHHHHHHh
Q 042841 50 DVIIFIVGGT-TYEESRSVALENANNSGIRFILGGSVIL---NSKRFLKDLEEA 99 (110)
Q Consensus 50 ~iIVFviGGi-Ty~E~r~~~~ls~~~~~~~iiiGst~il---~~~~fl~~L~~l 99 (110)
.+++|..||+ |.+.+..+.+ .+.+-+.-|+.++ +|...++++.+.
T Consensus 209 Pvi~~a~GGI~~~~d~~~~~~-----~GadgV~vGsai~~~~~p~~~~~~l~~~ 257 (305)
T 2nv1_A 209 PVVNFAAGGVATPADAALMMQ-----LGADGVFVGSGIFKSDNPAKFAKAIVEA 257 (305)
T ss_dssp SSCEEBCSCCCSHHHHHHHHH-----TTCSCEEECGGGGGSSCHHHHHHHHHHH
T ss_pred CEEEEeccCCCCHHHHHHHHH-----cCCCEEEEcHHHHcCCCHHHHHHHHHHH
Confidence 3677899999 8888776553 2555555566666 566677666653
No 19
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=41.86 E-value=15 Score=25.47 Aligned_cols=45 Identities=16% Similarity=0.296 Sum_probs=27.0
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHh
Q 042841 50 DVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEA 99 (110)
Q Consensus 50 ~iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l 99 (110)
.+-+++.||++-+.++.+.+. +-+.++-|+.|.++.+.-+.+..+
T Consensus 170 ~~~i~v~GGI~~~~~~~~~~~-----Gad~vvvGsai~~~~d~~~a~~~~ 214 (220)
T 2fli_A 170 SFDIEVDGGVDNKTIRACYEA-----GANVFVAGSYLFKASDLVSQVQTL 214 (220)
T ss_dssp CCEEEEESSCCTTTHHHHHHH-----TCCEEEESHHHHTSSCHHHHHHHH
T ss_pred CceEEEECcCCHHHHHHHHHc-----CCCEEEEChHHhCCCCHHHHHHHH
Confidence 456788899986555544332 556666667777655544444444
No 20
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=38.70 E-value=12 Score=27.42 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=28.6
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccC---hHHHHHHHH
Q 042841 50 DVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILN---SKRFLKDLE 97 (110)
Q Consensus 50 ~iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~---~~~fl~~L~ 97 (110)
.+-|+.+||+|.+.+..+.+ .|.+-+..++.|.. |..-+++|.
T Consensus 191 ~iPvvAiGGI~~~ni~~~~~-----aGa~gvav~sai~~a~dp~~a~~~l~ 236 (243)
T 3o63_A 191 DKPWFAIGGINAQRLPAVLD-----AGARRIVVVRAITSADDPRAAAEQLR 236 (243)
T ss_dssp CCCEEEESSCCTTTHHHHHH-----TTCCCEEESHHHHTCSSHHHHHHHHH
T ss_pred CCCEEEecCCCHHHHHHHHH-----cCCCEEEEeHHHhCCCCHHHHHHHHH
Confidence 56799999999887776554 35555666677775 444444444
No 21
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=38.53 E-value=17 Score=24.97 Aligned_cols=45 Identities=16% Similarity=0.181 Sum_probs=28.4
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHh
Q 042841 50 DVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEA 99 (110)
Q Consensus 50 ~iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l 99 (110)
.+-|.+.||++-+.++ ++.+ .|.+.++.|+.+..+.+..+.+..+
T Consensus 159 ~~~i~~~gGI~~~~~~---~~~~--~Gad~vvvGsai~~~~d~~~~~~~l 203 (211)
T 3f4w_A 159 KARIAVAGGISSQTVK---DYAL--LGPDVVIVGSAITHAADPAGEARKI 203 (211)
T ss_dssp SCEEEEESSCCTTTHH---HHHT--TCCSEEEECHHHHTCSSHHHHHHHH
T ss_pred CCcEEEECCCCHHHHH---HHHH--cCCCEEEECHHHcCCCCHHHHHHHH
Confidence 4667889999954443 3433 4777777788888654444444433
No 22
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=38.37 E-value=16 Score=27.01 Aligned_cols=45 Identities=22% Similarity=0.424 Sum_probs=30.8
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHh
Q 042841 50 DVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEA 99 (110)
Q Consensus 50 ~iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l 99 (110)
.+.|-|-||++-+-++. +.+ .|-++++.|+.|....+.-+.+..+
T Consensus 195 ~~~I~VDGGI~~~ti~~---~~~--aGAD~~V~GSaIf~a~dp~~~i~~l 239 (246)
T 3inp_A 195 DILLEIDGGVNPYNIAE---IAV--CGVNAFVAGSAIFNSDSYKQTIDKM 239 (246)
T ss_dssp CCEEEEESSCCTTTHHH---HHT--TTCCEEEESHHHHTSSCHHHHHHHH
T ss_pred CeeEEEECCcCHHHHHH---HHH--cCCCEEEEehHHhCCCCHHHHHHHH
Confidence 46788999999665544 443 4889999999998655444444443
No 23
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=35.54 E-value=23 Score=24.61 Aligned_cols=43 Identities=23% Similarity=0.233 Sum_probs=27.7
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccCh---HHHHHHHH
Q 042841 50 DVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNS---KRFLKDLE 97 (110)
Q Consensus 50 ~iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~---~~fl~~L~ 97 (110)
.+-|+..||+|-+.++.+.+ .|.+.+..|+.+... ..-++++.
T Consensus 164 ~~pvia~GGI~~~nv~~~~~-----~Ga~gv~vgs~i~~~~d~~~~~~~~~ 209 (221)
T 1yad_A 164 SIPVIAIGGMTPDRLRDVKQ-----AGADGIAVMSGIFSSAEPLEAARRYS 209 (221)
T ss_dssp CSCEEEESSCCGGGHHHHHH-----TTCSEEEESHHHHTSSSHHHHHHHHH
T ss_pred CCCEEEECCCCHHHHHHHHH-----cCCCEEEEhHHhhCCCCHHHHHHHHH
Confidence 34589999999877776554 366666667777753 34444443
No 24
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=34.92 E-value=1.1e+02 Score=21.04 Aligned_cols=50 Identities=12% Similarity=0.102 Sum_probs=26.3
Q ss_pred CCeEEEEEECCCC--HHHHHHHHHHHhcCCCCeEEEee--ccccChHHHHHHHHHhh
Q 042841 48 PQDVIIFIVGGTT--YEESRSVALENANNSGIRFILGG--SVILNSKRFLKDLEEAQ 100 (110)
Q Consensus 48 ~~~iIVFviGGiT--y~E~r~~~~ls~~~~~~~iiiGs--t~il~~~~fl~~L~~l~ 100 (110)
.+++|||+.|+.+ -.+...+-+..+. .+.+|.+=| +.--+. . ++.+.+-.
T Consensus 106 ~~riiil~~~~~~~~~~~~~~~a~~lk~-~gi~v~~Ig~G~~~~~~-~-l~~la~~~ 159 (192)
T 2x5n_A 106 RQRIVAFVGSPIVEDEKNLIRLAKRMKK-NNVAIDIIHIGELQNES-A-LQHFIDAA 159 (192)
T ss_dssp EEEEEEEECSCCSSCHHHHHHHHHHHHH-TTEEEEEEEESCC---C-H-HHHHHHHH
T ss_pred CceEEEEEECCCCCCchhHHHHHHHHHH-CCCEEEEEEeCCCCccH-H-HHHHHHhc
Confidence 4578999999885 3444333333332 577766422 222222 4 66666553
No 25
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=34.80 E-value=37 Score=25.69 Aligned_cols=45 Identities=24% Similarity=0.339 Sum_probs=31.9
Q ss_pred eEEEEEECCC-CHHHHHHHHHHHhcCCCCeEEEeecccc---ChHHHHHHHHHh
Q 042841 50 DVIIFIVGGT-TYEESRSVALENANNSGIRFILGGSVIL---NSKRFLKDLEEA 99 (110)
Q Consensus 50 ~iIVFviGGi-Ty~E~r~~~~ls~~~~~~~iiiGst~il---~~~~fl~~L~~l 99 (110)
.++++..||+ |.+.++.+.+. |.+-++-|+.|. +|...+++|.+.
T Consensus 209 PVivvA~GGI~t~~dv~~~~~~-----GAdgVlVGsai~~a~dp~~~~~~l~~a 257 (297)
T 4adt_A 209 PVVNFAAGGIATPADAAMCMQL-----GMDGVFVGSGIFESENPQKMASSIVMA 257 (297)
T ss_dssp SSEEEEESCCCSHHHHHHHHHT-----TCSCEEESHHHHTSSCHHHHHHHHHHH
T ss_pred CeEEEecCCCCCHHHHHHHHHc-----CCCEEEEhHHHHcCCCHHHHHHHHHHH
Confidence 3677899999 88887766543 555566667777 677777777654
No 26
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=34.78 E-value=26 Score=23.99 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=28.3
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHh
Q 042841 50 DVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEA 99 (110)
Q Consensus 50 ~iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l 99 (110)
.+-+.+.||++-+.++. +.+ .+-+.++-|+.|..+.+--+....+
T Consensus 158 ~~pi~v~GGI~~~~~~~---~~~--aGad~vvvGsaI~~~~dp~~~~~~~ 202 (207)
T 3ajx_A 158 RVPFSVAGGVKVATIPA---VQK--AGAEVAVAGGAIYGAADPAAAAKEL 202 (207)
T ss_dssp TSCEEEESSCCGGGHHH---HHH--TTCSEEEESHHHHTSSSHHHHHHHH
T ss_pred CCCEEEECCcCHHHHHH---HHH--cCCCEEEEeeeccCCCCHHHHHHHH
Confidence 35588999999654433 333 3677777778888765544444443
No 27
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=32.82 E-value=20 Score=18.72 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHhcCCCCeEEEee
Q 042841 58 GTTYEESRSVALENANNSGIRFILGG 83 (110)
Q Consensus 58 GiTy~E~r~~~~ls~~~~~~~iiiGs 83 (110)
|.|-+|.+.+.|-++. .+.+|...|
T Consensus 11 ggtpeelkklkeeakk-anirvtfwg 35 (36)
T 2ki0_A 11 GGTPEELKKLKEEAKK-ANIRVTFWG 35 (36)
T ss_dssp CCCHHHHHHHHHHHHH-HCCCCCBCC
T ss_pred cCCHHHHHHHHHHHHh-ccEEEEeec
Confidence 5689999999888774 566554433
No 28
>1lqv_C Vitamin-K dependent protein C; GLA (gamma-carboxyglutamic acid) residues, phospholipid BIND groove, Ca ION binding, blood clotting; HET: CGU NAG NDG PTY; 1.60A {Homo sapiens} SCOP: g.32.1.1 PDB: 3jtc_C*
Probab=31.43 E-value=18 Score=18.96 Aligned_cols=10 Identities=20% Similarity=0.554 Sum_probs=8.2
Q ss_pred CCHHHHHHHH
Q 042841 59 TTYEESRSVA 68 (110)
Q Consensus 59 iTy~E~r~~~ 68 (110)
++|+|+|.+.
T Consensus 22 Cs~EEarEvf 31 (33)
T 1lqv_C 22 CDFEEAKEIF 31 (33)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHh
Confidence 5899999875
No 29
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=30.82 E-value=36 Score=23.23 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=27.7
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccC-----hHHHHHHHHH
Q 042841 50 DVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILN-----SKRFLKDLEE 98 (110)
Q Consensus 50 ~iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~-----~~~fl~~L~~ 98 (110)
.+-|+..||+|-+.++ ++.+ .|-+.+..|+.+.. +..-.+++.+
T Consensus 150 ~~pvia~GGI~~~~~~---~~~~--~Ga~~v~vGs~i~~~d~~~~~~~~~~~~~ 198 (205)
T 1wa3_A 150 NVKFVPTGGVNLDNVC---EWFK--AGVLAVGVGSALVKGTPDEVREKAKAFVE 198 (205)
T ss_dssp TCEEEEBSSCCTTTHH---HHHH--HTCSCEEECHHHHCSCHHHHHHHHHHHHH
T ss_pred CCcEEEcCCCCHHHHH---HHHH--CCCCEEEECccccCCCHHHHHHHHHHHHH
Confidence 5779999999965444 3433 25666777777776 4444444443
No 30
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=30.65 E-value=1.1e+02 Score=20.81 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=29.4
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHH
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLE 97 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~ 97 (110)
.++|.||...-=...++.|.++ +.+|++.+-+--..++..+++.
T Consensus 16 ~vlITGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~ 59 (247)
T 3i1j_A 16 VILVTGAARGIGAAAARAYAAH--GASVVLLGRTEASLAEVSDQIK 59 (247)
T ss_dssp EEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHH
T ss_pred EEEEeCCCChHHHHHHHHHHHC--CCEEEEEecCHHHHHHHHHHHH
Confidence 4788999988877778888874 7788776654333334444443
No 31
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=30.63 E-value=1.3e+02 Score=20.60 Aligned_cols=31 Identities=6% Similarity=0.033 Sum_probs=23.8
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEeec
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGGS 84 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst 84 (110)
.++|.||...-=...++.|.++ +.+|++.+-
T Consensus 11 ~vlITGas~giG~~~a~~l~~~--G~~V~~~~r 41 (253)
T 3qiv_A 11 VGIVTGSGGGIGQAYAEALARE--GAAVVVADI 41 (253)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT--TCEEEEEES
T ss_pred EEEEECCCChHHHHHHHHHHHC--CCEEEEEcC
Confidence 5788999998877778888874 777777554
No 32
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=30.62 E-value=92 Score=21.85 Aligned_cols=44 Identities=16% Similarity=0.189 Sum_probs=30.6
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHH
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLE 97 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~ 97 (110)
.|+|.||...-=...++.|.++ |.+|++.+-+--...+.+++|.
T Consensus 14 ~vlITGas~GIG~~~a~~L~~~--G~~V~~~~r~~~~~~~~~~~l~ 57 (311)
T 3o26_A 14 CAVVTGGNKGIGFEICKQLSSN--GIMVVLTCRDVTKGHEAVEKLK 57 (311)
T ss_dssp EEEESSCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHH
T ss_pred EEEEecCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHH
Confidence 5778999988877788888874 7788887655444444444443
No 33
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=30.24 E-value=1.3e+02 Score=20.59 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=31.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHhcCCCCeEEEee-ccccChHHHHHHHHH
Q 042841 51 VIIFIVGGTTYEESRSVALENANNSGIRFILGG-SVILNSKRFLKDLEE 98 (110)
Q Consensus 51 iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGs-t~il~~~~fl~~L~~ 98 (110)
=.|+|.||...-=...++.|.++ +.+|++.+ ..--.....++++..
T Consensus 14 k~vlITGas~giG~~ia~~l~~~--G~~v~~~~~~~~~~~~~~~~~~~~ 60 (256)
T 3ezl_A 14 RIAYVTGGMGGIGTSICQRLHKD--GFRVVAGCGPNSPRRVKWLEDQKA 60 (256)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHT--TEEEEEEECTTCSSHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHHHHh
Confidence 35788999999888888888874 77887755 333344445555443
No 34
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=29.92 E-value=1.1e+02 Score=21.35 Aligned_cols=32 Identities=13% Similarity=0.129 Sum_probs=25.1
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEeecc
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGGSV 85 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~ 85 (110)
.|+|.||...-=...++.|.++ |.+|++.+-+
T Consensus 31 ~vlITGas~gIG~~la~~l~~~--G~~V~~~~r~ 62 (262)
T 3rkr_A 31 VAVVTGASRGIGAAIARKLGSL--GARVVLTARD 62 (262)
T ss_dssp EEEESSTTSHHHHHHHHHHHHT--TCEEEEEESC
T ss_pred EEEEECCCChHHHHHHHHHHHC--CCEEEEEECC
Confidence 5789999998888888888874 7788776544
No 35
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=28.76 E-value=90 Score=22.32 Aligned_cols=45 Identities=13% Similarity=0.037 Sum_probs=33.3
Q ss_pred eEEEEEECCC-CHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHh
Q 042841 50 DVIIFIVGGT-TYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEA 99 (110)
Q Consensus 50 ~iIVFviGGi-Ty~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l 99 (110)
.+-|.-.||+ |.+.++.+.++ |.+-++-|+.+.+|....+++.+.
T Consensus 181 ~ipvIA~GGI~t~~d~~~~~~~-----GadgV~VGsal~~p~~~~~~~~~~ 226 (232)
T 3igs_A 181 GCRVIAEGRYNSPALAAEAIRY-----GAWAVTVGSAITRLEHICGWYNDA 226 (232)
T ss_dssp TCCEEEESCCCSHHHHHHHHHT-----TCSEEEECHHHHCHHHHHHHHHHH
T ss_pred CCcEEEECCCCCHHHHHHHHHc-----CCCEEEEehHhcCHHHHHHHHHHH
Confidence 5778899999 68888776653 444445568899999888887764
No 36
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=28.54 E-value=31 Score=23.45 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=21.7
Q ss_pred EEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccCh
Q 042841 51 VIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNS 89 (110)
Q Consensus 51 iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~ 89 (110)
+-|++.||++.+.++.+ .+ .+.+.+..|+.+...
T Consensus 163 ~pvia~GGI~~~nv~~~---~~--~Ga~gv~vgs~i~~~ 196 (215)
T 1xi3_A 163 IPVVAIGGINKDNAREV---LK--TGVDGIAVISAVMGA 196 (215)
T ss_dssp SCEEEESSCCTTTHHHH---HT--TTCSEEEESHHHHTS
T ss_pred CCEEEECCcCHHHHHHH---HH--cCCCEEEEhHHHhCC
Confidence 44788999995555543 33 366666666766653
No 37
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=28.32 E-value=90 Score=22.29 Aligned_cols=45 Identities=16% Similarity=0.082 Sum_probs=33.3
Q ss_pred eEEEEEECCC-CHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHh
Q 042841 50 DVIIFIVGGT-TYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEA 99 (110)
Q Consensus 50 ~iIVFviGGi-Ty~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l 99 (110)
.+-|.-.||+ |.+.++.+.++ |.+-++-|+.+.+|..+.+++.+.
T Consensus 181 ~ipvIA~GGI~t~~d~~~~~~~-----GadgV~VGsai~~p~~~~~~f~~~ 226 (229)
T 3q58_A 181 GCRVIAEGRYNTPALAANAIEH-----GAWAVTVGSAITRIEHICQWFSHA 226 (229)
T ss_dssp TCCEEEESSCCSHHHHHHHHHT-----TCSEEEECHHHHCHHHHHHHHHHH
T ss_pred CCCEEEECCCCCHHHHHHHHHc-----CCCEEEEchHhcChHHHHHHHHHH
Confidence 6778899999 68888776543 444444468999999988887653
No 38
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=28.29 E-value=1.3e+02 Score=20.57 Aligned_cols=43 Identities=7% Similarity=0.135 Sum_probs=27.7
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHH
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDL 96 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L 96 (110)
.++|.||...-=...++.|.++ +.+|++.+.+--..+...+++
T Consensus 7 ~vlITGas~gIG~~~a~~l~~~--G~~v~~~~r~~~~~~~~~~~~ 49 (247)
T 3lyl_A 7 VALVTGASRGIGFEVAHALASK--GATVVGTATSQASAEKFENSM 49 (247)
T ss_dssp EEEESSCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHH
Confidence 4778899888777777888874 777777655433333333333
No 39
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=27.66 E-value=20 Score=25.21 Aligned_cols=45 Identities=11% Similarity=0.135 Sum_probs=30.0
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHhh
Q 042841 50 DVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQ 100 (110)
Q Consensus 50 ~iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l~ 100 (110)
.+-+.+.||++.+.++. +.+ .|-+.++-|+.|.++.+-.+.. .+.
T Consensus 166 ~~pi~v~GGI~~~~~~~---~~~--aGAd~vvvGsaI~~a~dp~~a~-~l~ 210 (218)
T 3jr2_A 166 GIELSITGGIVPEDIYL---FEG--IKTKTFIAGRALAGAEGQQTAA-ALR 210 (218)
T ss_dssp TCEEEEESSCCGGGGGG---GTT--SCEEEEEESGGGSHHHHHHHHH-HHH
T ss_pred CCCEEEECCCCHHHHHH---HHH--cCCCEEEEchhhcCCCCHHHHH-HHH
Confidence 34578999999665543 222 4778877788898777665555 443
No 40
>1j34_C Coagulation factor IX; magnesium ION, calcium ION, GLA domain, protein binding/blood clotting complex; HET: CGU; 1.55A {Bos taurus} SCOP: g.32.1.1 PDB: 1j35_C* 1cfh_A 1cfi_A* 1mgx_A 1iod_G*
Probab=27.64 E-value=23 Score=19.95 Aligned_cols=12 Identities=33% Similarity=0.515 Sum_probs=9.7
Q ss_pred CCHHHHHHHHHH
Q 042841 59 TTYEESRSVALE 70 (110)
Q Consensus 59 iTy~E~r~~~~l 70 (110)
++|+|+|.+.+-
T Consensus 23 Cs~EEArEvFe~ 34 (46)
T 1j34_C 23 CSFEEAREVFEN 34 (46)
T ss_dssp CCHHHHHHHHCC
T ss_pred CCHHHHHHHhcC
Confidence 589999998653
No 41
>3hxi_C Eukaryotic translation initiation factor 4E- binding protein 1; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Homo sapiens} PDB: 3hxg_C*
Probab=26.90 E-value=16 Score=17.25 Aligned_cols=17 Identities=24% Similarity=0.565 Sum_probs=13.4
Q ss_pred eeccccChHHHHHHHHH
Q 042841 82 GGSVILNSKRFLKDLEE 98 (110)
Q Consensus 82 Gst~il~~~~fl~~L~~ 98 (110)
|||.|+=-..|+-+++.
T Consensus 2 GGTrIiYdR~fLl~~rn 18 (21)
T 3hxi_C 2 GSGRIIYDRKFLMECRN 18 (26)
T ss_pred CceEEEEeHHHHHHhcc
Confidence 78888888888877653
No 42
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=26.81 E-value=1.5e+02 Score=20.03 Aligned_cols=43 Identities=14% Similarity=0.208 Sum_probs=29.2
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHH
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDL 96 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L 96 (110)
.++|.||...-=...++.|.++ +.+|++.+-+--..++..+++
T Consensus 4 ~vlITGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~ 46 (235)
T 3l77_A 4 VAVITGASRGIGEAIARALARD--GYALALGARSVDRLEKIAHEL 46 (235)
T ss_dssp EEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHH
Confidence 4778999998877788888874 778887665433333444444
No 43
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=26.70 E-value=1.5e+02 Score=20.15 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=23.8
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEeec
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGGS 84 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst 84 (110)
.|+|.||..+-=...++.|.++ +.+|++.+.
T Consensus 15 ~vlItGasggiG~~la~~l~~~--G~~V~~~~r 45 (260)
T 3awd_A 15 VAIVTGGAQNIGLACVTALAEA--GARVIIADL 45 (260)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT--TCEEEEEES
T ss_pred EEEEeCCCchHHHHHHHHHHHC--CCEEEEEeC
Confidence 3678899999888888888874 677777554
No 44
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=26.43 E-value=1.5e+02 Score=20.99 Aligned_cols=32 Identities=16% Similarity=0.023 Sum_probs=24.9
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEeecc
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGGSV 85 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~ 85 (110)
.++|.||...-=...++.|.++ |.+|++.+-+
T Consensus 26 ~~lVTGas~GIG~aia~~la~~--G~~V~~~~r~ 57 (279)
T 3sju_A 26 TAFVTGVSSGIGLAVARTLAAR--GIAVYGCARD 57 (279)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--TCEEEEEESC
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCC
Confidence 5889999998877788888874 7788776543
No 45
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=26.19 E-value=26 Score=24.48 Aligned_cols=10 Identities=30% Similarity=0.973 Sum_probs=8.0
Q ss_pred eEEEEEECCC
Q 042841 50 DVIIFIVGGT 59 (110)
Q Consensus 50 ~iIVFviGGi 59 (110)
.=|+|||||.
T Consensus 101 ~~i~FvIGGa 110 (167)
T 1to0_A 101 SKVTFVIGGS 110 (167)
T ss_dssp CEEEEEECCS
T ss_pred ceEEEEEECC
Confidence 3589999985
No 46
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}
Probab=25.31 E-value=1.5e+02 Score=20.79 Aligned_cols=32 Identities=19% Similarity=0.159 Sum_probs=24.2
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEeecc
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGGSV 85 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~ 85 (110)
.+.|.||...-=...++.|.++ +.+|++.+-+
T Consensus 13 ~vlVTGas~gIG~aia~~l~~~--G~~V~~~~r~ 44 (281)
T 3svt_A 13 TYLVTGGGSGIGKGVAAGLVAA--GASVMIVGRN 44 (281)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT--TCEEEEEESC
T ss_pred EEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCC
Confidence 4788999998877788888874 7777776543
No 47
>1zzg_A Glucose-6-phosphate isomerase; structural genomics, riken structural genomics/PR initiative, RSGI, NPPSFA; 1.95A {Thermus thermophilus}
Probab=25.28 E-value=1.2e+02 Score=24.01 Aligned_cols=89 Identities=17% Similarity=0.286 Sum_probs=55.3
Q ss_pred CccccceeccchHHHHHHHHHcCCCCCCC-CcccC-CCC------------CCCCCCeEEEEEEC-CCCHHHHHHHHHHH
Q 042841 7 GVENVYTQHQPLLFQTMESIIKGRLRDVD-YPFLG-NHF------------QQGRPQDVIIFIVG-GTTYEESRSVALEN 71 (110)
Q Consensus 7 gv~n~~sr~~P~l~~ii~~l~~~~l~~~~-fp~~~-~~~------------~r~~~~~iIVFviG-GiTy~E~r~~~~ls 71 (110)
+++..+..|.|.+..+.+.+.+.+-...+ +.+++ |.. .+.+.+. |+++| |.||.-.+.+++.-
T Consensus 11 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~lGw~~lp~~~~~~~~i~~i~~~~~~~~~--Vv~iGIGGS~LG~~~~~~aL 88 (415)
T 1zzg_A 11 GFPEALSRHGPLLEEARRRLLAKRGEPGSMLGWMDLPEDTETLREVRRYREANPWVED--FVLIGIGGSALGPKALEAAF 88 (415)
T ss_dssp THHHHHHHTHHHHHHHHHHHHHTSSSTTCCCGGGTGGGCTTHHHHHHHHHHTCTTCSE--EEEECCGGGTHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhccCcccCCCccCcccccCHHHHHHHHHHhcCCCE--EEEEccCccHHHHHHHHHHH
Confidence 34556678889999999998876644322 33343 111 1111233 34455 88999999998876
Q ss_pred hcCCCCeEEEeeccccChHHHHHHHHHhh
Q 042841 72 ANNSGIRFILGGSVILNSKRFLKDLEEAQ 100 (110)
Q Consensus 72 ~~~~~~~iiiGst~il~~~~fl~~L~~l~ 100 (110)
+. ....+...++ +.|..+.+.+..++
T Consensus 89 ~~-~~~~~~~~~n--~dp~~~~~~l~~l~ 114 (415)
T 1zzg_A 89 NE-SGVRFHYLDH--VEPEPILRLLRTLD 114 (415)
T ss_dssp CC-SCCEEEEECS--CCHHHHHHHHHHSC
T ss_pred hc-CCCceEEecC--CCHHHHHHHHhhCC
Confidence 53 4566777654 67887777777663
No 48
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=24.99 E-value=63 Score=24.10 Aligned_cols=49 Identities=20% Similarity=0.252 Sum_probs=35.4
Q ss_pred CCeEEEEEECCC-CHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHhhh
Q 042841 48 PQDVIIFIVGGT-TYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQR 101 (110)
Q Consensus 48 ~~~iIVFviGGi-Ty~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l~~ 101 (110)
|..+++.--||+ |.++++.+.+ .|.+-++-|+.|+.+.+.-+.+.+|-.
T Consensus 218 p~~~~vIaesGI~t~edv~~l~~-----~Ga~gvLVG~almr~~d~~~~~~~l~~ 267 (272)
T 3tsm_A 218 PSDRLLVGESGIFTHEDCLRLEK-----SGIGTFLIGESLMRQHDVAAATRALLT 267 (272)
T ss_dssp CTTSEEEEESSCCSHHHHHHHHT-----TTCCEEEECHHHHTSSCHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCHHHHHHHHH-----cCCCEEEEcHHHcCCcCHHHHHHHHHh
Confidence 345677888999 8888887643 466767778888887777777766643
No 49
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Probab=24.67 E-value=1.8e+02 Score=20.13 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=24.7
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEeecc
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGGSV 85 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~ 85 (110)
.++|.||...-=...++.|.+. +.+|++.+-+
T Consensus 14 ~vlVTGas~gIG~aia~~l~~~--G~~V~~~~r~ 45 (252)
T 3f1l_A 14 IILVTGASDGIGREAAMTYARY--GATVILLGRN 45 (252)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--TCEEEEEESC
T ss_pred EEEEeCCCChHHHHHHHHHHHC--CCEEEEEeCC
Confidence 5788999998777777888874 7788876644
No 50
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=24.33 E-value=1.9e+02 Score=20.44 Aligned_cols=45 Identities=9% Similarity=0.041 Sum_probs=31.9
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHH
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEE 98 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~ 98 (110)
.++|.||...-=...++.|.++ +.+|++.+-+--..+...+++..
T Consensus 34 ~~lVTGas~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~ 78 (276)
T 3r1i_A 34 RALITGASTGIGKKVALAYAEA--GAQVAVAARHSDALQVVADEIAG 78 (276)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--TCEEEEEESSGGGGHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHh
Confidence 4789999999888888888874 77888876654444455555443
No 51
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}
Probab=24.26 E-value=1.6e+02 Score=21.41 Aligned_cols=44 Identities=18% Similarity=0.151 Sum_probs=29.5
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHH
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLE 97 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~ 97 (110)
.|+|.||..+-=...+..|.++ |.+|++.+-+--..++..+++.
T Consensus 10 ~vlVTGas~gIG~~la~~l~~~--G~~Vv~~~r~~~~~~~~~~~l~ 53 (319)
T 3ioy_A 10 TAFVTGGANGVGIGLVRQLLNQ--GCKVAIADIRQDSIDKALATLE 53 (319)
T ss_dssp EEEEETTTSTHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHH
T ss_pred EEEEcCCchHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHH
Confidence 5789999998877788888874 7788776554333334444443
No 52
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=24.25 E-value=27 Score=24.09 Aligned_cols=9 Identities=22% Similarity=0.726 Sum_probs=7.4
Q ss_pred EEEEEECCC
Q 042841 51 VIIFIVGGT 59 (110)
Q Consensus 51 iIVFviGGi 59 (110)
=|+|+|||.
T Consensus 97 ~i~FvIGG~ 105 (155)
T 1ns5_A 97 DVSLLIGGP 105 (155)
T ss_dssp CEEEEECBT
T ss_pred eEEEEEECC
Confidence 388999984
No 53
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=23.79 E-value=1.9e+02 Score=20.10 Aligned_cols=45 Identities=13% Similarity=0.196 Sum_probs=31.9
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHH
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEE 98 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~ 98 (110)
.+.|.||...-=...++.|.++ |.+|++.+-+--..++..+++..
T Consensus 9 ~vlVTGas~GIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~ 53 (252)
T 3h7a_A 9 TVAVIGAGDYIGAEIAKKFAAE--GFTVFAGRRNGEKLAPLVAEIEA 53 (252)
T ss_dssp EEEEECCSSHHHHHHHHHHHHT--TCEEEEEESSGGGGHHHHHHHHH
T ss_pred EEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHh
Confidence 4788999998877778888874 77888876655555555555544
No 54
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=23.68 E-value=32 Score=24.03 Aligned_cols=9 Identities=33% Similarity=0.767 Sum_probs=7.4
Q ss_pred EEEEEECCC
Q 042841 51 VIIFIVGGT 59 (110)
Q Consensus 51 iIVFviGGi 59 (110)
=|+|+|||.
T Consensus 96 ~i~FvIGGa 104 (163)
T 1o6d_A 96 DITILIGGP 104 (163)
T ss_dssp CEEEEECCT
T ss_pred eEEEEEECC
Confidence 388999985
No 55
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=23.63 E-value=2e+02 Score=20.62 Aligned_cols=32 Identities=16% Similarity=0.187 Sum_probs=24.8
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEeecc
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGGSV 85 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~ 85 (110)
.|+|.||...-=...+..|.++ +.+|++.+-+
T Consensus 33 ~vlVTGas~gIG~~la~~l~~~--G~~V~~~~r~ 64 (301)
T 3tjr_A 33 AAVVTGGASGIGLATATEFARR--GARLVLSDVD 64 (301)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT--TCEEEEEESC
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECC
Confidence 5778999998887888888874 7788876544
No 56
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=23.25 E-value=1.5e+02 Score=21.03 Aligned_cols=43 Identities=9% Similarity=0.148 Sum_probs=28.6
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHH
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDL 96 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L 96 (110)
.+.|.||...-=...++.|.++ +.+|++.+.+--...+..+++
T Consensus 28 ~~lVTGas~gIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~l 70 (271)
T 4ibo_A 28 TALVTGSSRGLGRAMAEGLAVA--GARILINGTDPSRVAQTVQEF 70 (271)
T ss_dssp EEEETTCSSHHHHHHHHHHHHT--TCEEEECCSCHHHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHH
Confidence 4788999988877788888874 778887664333333334444
No 57
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A
Probab=23.13 E-value=29 Score=24.17 Aligned_cols=12 Identities=33% Similarity=0.852 Sum_probs=9.0
Q ss_pred CCeEEEEEECCC
Q 042841 48 PQDVIIFIVGGT 59 (110)
Q Consensus 48 ~~~iIVFviGGi 59 (110)
...=|+|+|||.
T Consensus 103 g~~~i~FvIGG~ 114 (163)
T 4fak_A 103 GQSDFVFVIGGS 114 (163)
T ss_dssp TCCEEEEEECBT
T ss_pred CCcceEEEEECC
Confidence 345689999983
No 58
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=23.09 E-value=61 Score=17.49 Aligned_cols=18 Identities=11% Similarity=0.235 Sum_probs=10.5
Q ss_pred hHHHHHHHHHhhhccccCC
Q 042841 89 SKRFLKDLEEAQRTAKSSS 107 (110)
Q Consensus 89 ~~~fl~~L~~l~~~~~~~~ 107 (110)
.++|+++|.. +++...++
T Consensus 19 ak~fv~wL~~-~k~r~~~p 36 (39)
T 1jrj_A 19 VRLFIEWLKN-GGPSSGAP 36 (39)
T ss_dssp HHHHHHHHHT-TGGGSSSC
T ss_pred HHHHHHHHHc-CCCCCCCC
Confidence 4678888876 33333333
No 59
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima}
Probab=23.05 E-value=1.2e+02 Score=22.34 Aligned_cols=36 Identities=22% Similarity=0.429 Sum_probs=27.6
Q ss_pred EEECCCCHHHHHHHHHHHhcCC--CCeEEEeeccccCh
Q 042841 54 FIVGGTTYEESRSVALENANNS--GIRFILGGSVILNS 89 (110)
Q Consensus 54 FviGGiTy~E~r~~~~ls~~~~--~~~iiiGst~il~~ 89 (110)
.|+=|++.+=+..+-+-+++.. ...-+|||.++.++
T Consensus 175 vvitGCsH~GI~Niv~~a~~~~g~~i~~viGGfHL~~~ 212 (267)
T 3h3e_A 175 VVITGCSHRGIDNILLDIAETFNERIKMVVGGFHLLKS 212 (267)
T ss_dssp EEEESCCTTCHHHHHHHHHTTCSSCEEEEEEECCCTTS
T ss_pred EEEeCCCCcCHHHHHHHHHHHhCCCceEEEeccccCCC
Confidence 4667888888888877776533 45678999999887
No 60
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}
Probab=23.03 E-value=1.9e+02 Score=19.86 Aligned_cols=31 Identities=10% Similarity=0.102 Sum_probs=24.3
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEeec
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGGS 84 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst 84 (110)
.++|.||...-=...++.|.++ +.+|++.+-
T Consensus 11 ~vlITGas~gIG~~~a~~l~~~--G~~V~~~~r 41 (261)
T 3n74_A 11 VALITGAGSGFGEGMAKRFAKG--GAKVVIVDR 41 (261)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT--TCEEEEEES
T ss_pred EEEEECCCchHHHHHHHHHHHC--CCEEEEEcC
Confidence 5788999998877888888874 777777654
No 61
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=22.53 E-value=1.9e+02 Score=20.15 Aligned_cols=32 Identities=13% Similarity=0.159 Sum_probs=23.0
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEeecc
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGGSV 85 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~ 85 (110)
.++|.||...-=...++.|.++ +.+|++.+-+
T Consensus 13 ~vlVTGas~gIG~aia~~l~~~--G~~V~~~~r~ 44 (264)
T 3ucx_A 13 VVVISGVGPALGTTLARRCAEQ--GADLVLAART 44 (264)
T ss_dssp EEEEESCCTTHHHHHHHHHHHT--TCEEEEEESC
T ss_pred EEEEECCCcHHHHHHHHHHHHC--cCEEEEEeCC
Confidence 4778898887766777778764 7777776543
No 62
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Probab=22.37 E-value=2.1e+02 Score=20.12 Aligned_cols=43 Identities=16% Similarity=0.216 Sum_probs=29.0
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHH
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDL 96 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L 96 (110)
.++|.||...-=...++.|.++ +.+|++.+-+--...+..+++
T Consensus 29 ~~lVTGas~GIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~ 71 (277)
T 4fc7_A 29 VAFITGGGSGIGFRIAEIFMRH--GCHTVIASRSLPRVLTAARKL 71 (277)
T ss_dssp EEEEETTTSHHHHHHHHHHHTT--TCEEEEEESCHHHHHHHHHHH
T ss_pred EEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHH
Confidence 5789999998877788888863 778888765433333333333
No 63
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=22.07 E-value=1.5e+02 Score=20.73 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=23.8
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEeecc
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGGSV 85 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~ 85 (110)
.++|.||...-=...++.|.++ +.+|++.+-+
T Consensus 12 ~vlVTGas~gIG~aia~~l~~~--G~~V~~~~r~ 43 (262)
T 3pk0_A 12 SVVVTGGTKGIGRGIATVFARA--GANVAVAGRS 43 (262)
T ss_dssp EEEETTCSSHHHHHHHHHHHHT--TCEEEEEESC
T ss_pred EEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCC
Confidence 4778899888777777888874 7778776543
No 64
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=21.98 E-value=36 Score=23.47 Aligned_cols=33 Identities=24% Similarity=0.242 Sum_probs=21.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccC
Q 042841 51 VIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILN 88 (110)
Q Consensus 51 iIVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~ 88 (110)
+=|+..||++.+.++.+. + .+.+.+..|+.+..
T Consensus 173 ~pvia~GGI~~~nv~~~~---~--~Ga~gv~vgs~i~~ 205 (227)
T 2tps_A 173 IPIVGIGGITIDNAAPVI---Q--AGADGVSMISAISQ 205 (227)
T ss_dssp CCEEEESSCCTTTSHHHH---H--TTCSEEEESHHHHT
T ss_pred CCEEEEcCCCHHHHHHHH---H--cCCCEEEEhHHhhc
Confidence 558899999955555433 3 35566666666664
No 65
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=21.91 E-value=1.9e+02 Score=20.04 Aligned_cols=32 Identities=6% Similarity=0.052 Sum_probs=23.7
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEeecc
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGGSV 85 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~ 85 (110)
.++|.||...-=...++.|.++ +.+|++.+-+
T Consensus 14 ~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~ 45 (256)
T 3gaf_A 14 VAIVTGAAAGIGRAIAGTFAKA--GASVVVTDLK 45 (256)
T ss_dssp EEEECSCSSHHHHHHHHHHHHH--TCEEEEEESS
T ss_pred EEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCC
Confidence 5778999888777777888774 7777775543
No 66
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}
Probab=21.79 E-value=2e+02 Score=19.85 Aligned_cols=44 Identities=16% Similarity=0.153 Sum_probs=29.5
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHH
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLE 97 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~ 97 (110)
.+.|.||...-=...++.|.+. +.+|++.+-+--..++..+++.
T Consensus 9 ~~lVTGas~GIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~ 52 (250)
T 3nyw_A 9 LAIITGASQGIGAVIAAGLATD--GYRVVLIARSKQNLEKVHDEIM 52 (250)
T ss_dssp EEEEESTTSHHHHHHHHHHHHH--TCEEEEEESCHHHHHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHH
Confidence 5788999998877778888874 7788876654333334444443
No 67
>4fmw_A RNA (guanine-9-)-methyltransferase domain-contain protein 2; structural genomics, structural genomics consortium, SGC, RN modification; HET: SAH; 2.00A {Homo sapiens}
Probab=21.76 E-value=30 Score=24.66 Aligned_cols=46 Identities=17% Similarity=0.316 Sum_probs=24.7
Q ss_pred EEEECCC---------CHHHHHHHHHHHhcCC--CCeEEEeeccccChHHHHHHHHHh
Q 042841 53 IFIVGGT---------TYEESRSVALENANNS--GIRFILGGSVILNSKRFLKDLEEA 99 (110)
Q Consensus 53 VFviGGi---------Ty~E~r~~~~ls~~~~--~~~iiiGst~il~~~~fl~~L~~l 99 (110)
||||||+ ||.-++..- +.-... +.-+-..+..+||-+..++-|...
T Consensus 122 vYIIGGiVD~n~~K~lt~~~A~~~g-i~taRLPi~~~i~~~~~kvLtiN~V~eILl~~ 178 (197)
T 4fmw_A 122 AYVIGGLVDHNHHKGLTYKQASDYG-INHAQLPLGNFVKMNSRKVLAVNHVFEIILEY 178 (197)
T ss_dssp EEEEECCCCTTSSTTHHHHHHHHHT-CEEEBCCCTTTC----CCCCCHHHHHHHHHHH
T ss_pred EEEEEEEEeCCCCcchhHHHHHHcC-CCEEeccccceeecCCCccccHHHHHHHHHHH
Confidence 7999964 555444321 110011 222456778899999998877765
No 68
>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}
Probab=21.71 E-value=1.9e+02 Score=20.66 Aligned_cols=44 Identities=23% Similarity=0.276 Sum_probs=27.4
Q ss_pred EEEECCC-CHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHHHhh
Q 042841 53 IFIVGGT-TYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQ 100 (110)
Q Consensus 53 VFviGGi-Ty~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~~l~ 100 (110)
+-+-||+ |.+.++.+-+. .--+|++|+..+-+|+-+-+.....+
T Consensus 78 l~vGGGIrs~e~~~~~l~~----GadkVii~t~a~~~p~li~e~~~~~g 122 (243)
T 4gj1_A 78 LQVGGGIRSKEEVKALLDC----GVKRVVIGSMAIKDATLCLEILKEFG 122 (243)
T ss_dssp EEEESSCCCHHHHHHHHHT----TCSEEEECTTTTTCHHHHHHHHHHHC
T ss_pred eEeccccccHHHHHHHHHc----CCCEEEEccccccCCchHHHHHhccc
Confidence 6677888 45655544332 23478888888877775555555443
No 69
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=21.44 E-value=1.4e+02 Score=22.89 Aligned_cols=40 Identities=10% Similarity=0.150 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHhcCCCCeEEEeeccccChH--HHHHHHHHhh
Q 042841 60 TYEESRSVALENANNSGIRFILGGSVILNSK--RFLKDLEEAQ 100 (110)
Q Consensus 60 Ty~E~r~~~~ls~~~~~~~iiiGst~il~~~--~fl~~L~~l~ 100 (110)
|.+|++.+.+++++ .|+.+.+|-..-.+|. .|++....+.
T Consensus 104 ~~~ea~~l~~~A~~-~g~~~~v~~~yr~~p~vr~~i~~~~~l~ 145 (372)
T 4gmf_A 104 HPDDISSLQTLAQE-QGCCYWINTFYPHTRAGRTWLRDAQQLR 145 (372)
T ss_dssp CHHHHHHHHHHHHH-HTCCEEEECSGGGSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-cCCEEEEcCcccCCHHHHHHHHHHHHHH
Confidence 89999999999996 7999999988888884 7877766654
No 70
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2
Probab=21.22 E-value=2.2e+02 Score=19.88 Aligned_cols=31 Identities=13% Similarity=0.014 Sum_probs=23.5
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEeec
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGGS 84 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst 84 (110)
.++|.||..+-=...+..|.++ +.+|++.+-
T Consensus 33 ~vlITGasggIG~~la~~L~~~--G~~V~~~~r 63 (272)
T 1yb1_A 33 IVLITGAGHGIGRLTAYEFAKL--KSKLVLWDI 63 (272)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT--TCEEEEEES
T ss_pred EEEEECCCchHHHHHHHHHHHC--CCEEEEEEc
Confidence 4778999998877777888874 677777553
No 71
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Probab=21.11 E-value=2.2e+02 Score=19.83 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=23.9
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEeecc
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGGSV 85 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~ 85 (110)
.++|.||...-=...++.|.+. +.+|++.+-+
T Consensus 10 ~~lVTGas~GIG~aia~~l~~~--G~~V~~~~r~ 41 (265)
T 3lf2_A 10 VAVVTGGSSGIGLATVELLLEA--GAAVAFCARD 41 (265)
T ss_dssp EEEEETCSSHHHHHHHHHHHHT--TCEEEEEESC
T ss_pred EEEEeCCCChHHHHHHHHHHHC--CCEEEEEeCC
Confidence 5788999888777777888774 7777776543
No 72
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Probab=20.94 E-value=1.8e+02 Score=19.64 Aligned_cols=31 Identities=10% Similarity=0.049 Sum_probs=22.7
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEeec
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGGS 84 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst 84 (110)
.|+|.||..+-=...++.|.++ +.+|++.+-
T Consensus 13 ~vlVtGasggiG~~la~~l~~~--G~~V~~~~r 43 (255)
T 1fmc_A 13 CAIITGAGAGIGKEIAITFATA--GASVVVSDI 43 (255)
T ss_dssp EEEETTTTSHHHHHHHHHHHTT--TCEEEEEES
T ss_pred EEEEECCccHHHHHHHHHHHHC--CCEEEEEcC
Confidence 3678898888777777888763 677776543
No 73
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Probab=20.73 E-value=2e+02 Score=19.43 Aligned_cols=33 Identities=12% Similarity=-0.037 Sum_probs=23.8
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEeecc
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGGSV 85 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~ 85 (110)
.|.|.||..+-=...++.|.+. .+.+|++.+.+
T Consensus 6 ~vlITGasggIG~~~a~~L~~~-~g~~V~~~~r~ 38 (276)
T 1wma_A 6 VALVTGGNKGIGLAIVRDLCRL-FSGDVVLTARD 38 (276)
T ss_dssp EEEESSCSSHHHHHHHHHHHHH-SSSEEEEEESS
T ss_pred EEEEeCCCcHHHHHHHHHHHHh-cCCeEEEEeCC
Confidence 4678899988777777888772 36777776543
No 74
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=20.65 E-value=2e+02 Score=20.29 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=23.2
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEeecc
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGGSV 85 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~ 85 (110)
.+.|.||...-=...++.|.+. |.+|++.+-+
T Consensus 6 ~~lVTGas~GIG~aia~~la~~--G~~V~~~~r~ 37 (264)
T 3tfo_A 6 VILITGASGGIGEGIARELGVA--GAKILLGARR 37 (264)
T ss_dssp EEEESSTTSHHHHHHHHHHHHT--TCEEEEEESS
T ss_pred EEEEeCCccHHHHHHHHHHHHC--CCEEEEEECC
Confidence 4778888888777777778763 7777776544
No 75
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=20.45 E-value=2.1e+02 Score=20.17 Aligned_cols=44 Identities=7% Similarity=-0.005 Sum_probs=29.0
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHH
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLE 97 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~ 97 (110)
.++|.||...-=...++.|.++ +.+|++.+-+--..++..+++.
T Consensus 30 ~~lVTGas~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~~ 73 (270)
T 3ftp_A 30 VAIVTGASRGIGRAIALELARR--GAMVIGTATTEAGAEGIGAAFK 73 (270)
T ss_dssp EEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHH
Confidence 5788999998877778888874 7788776543333333333333
No 76
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}
Probab=20.21 E-value=2e+02 Score=20.04 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=28.9
Q ss_pred EEEEECCCCHHHHHHHHHHHhcCCCCeEEEeeccccChHHHHHHHH
Q 042841 52 IIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLE 97 (110)
Q Consensus 52 IVFviGGiTy~E~r~~~~ls~~~~~~~iiiGst~il~~~~fl~~L~ 97 (110)
.++|.||...-=...++.|.++ +.+|++.+-+--..++..+++.
T Consensus 12 ~~lVTGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~ 55 (267)
T 3t4x_A 12 TALVTGSTAGIGKAIATSLVAE--GANVLINGRREENVNETIKEIR 55 (267)
T ss_dssp EEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHH
Confidence 4778999988777778888874 7788876644333333344443
Done!