BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042842
(375 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 95/378 (25%), Positives = 156/378 (41%), Gaps = 76/378 (20%)
Query: 48 GGPGCSSMLGNFLEVGPWRVTHRPNTTQQQLALEPNLGSWNRISGIVFLDNPIGTGLSFA 107
GGPGCSS+ G F E+G P++ L N SWN + ++FLD P+ G S++
Sbjct: 52 GGPGCSSLTGLFFELG-------PSSIGPDLKPIGNPYSWNSNATVIFLDQPVNVGFSYS 104
Query: 108 VTNDEIPRNQSSVAKHLFAAINGFIDLDPLFKNR--PIYVTGESYAGKSIPSIGYHILKQ 165
++ N + K ++ + F D P + N+ ++ GESYAG IP IL
Sbjct: 105 GSSGV--SNTVAAGKDVYNFLELFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSH 162
Query: 166 NKRVPVSKREKLHGVAIGNGLTDPVSQVAVHALNAYFIG----LINGRQRVELEKAQRKA 221
R L V IGNGLTDP++Q + A G ++ + +E + +
Sbjct: 163 KDR-----NFNLTSVLIGNGLTDPLTQYNYYEPMACGEGGEPSVLPSEECSAMEDSLERC 217
Query: 222 IRLVK-----MGSWS------------------DATNARHDRKDPYATSL-------VTS 251
+ L++ WS N RKD +L +
Sbjct: 218 LGLIESCYDSQSVWSCVPATIYCNNAQLAPYQRTGRNVYDIRKDCEGGNLCYPTLQDIDD 277
Query: 252 LLRMDEVKKAFGAK----DTITFDVCSNV-----FMKALH---EDLM------------K 287
L D VK+A GA+ ++ FD+ N +MK H DL+ K
Sbjct: 278 YLNQDYVKEAVGAEVDHYESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDK 337
Query: 288 NLRDGVASTESWMNTLKWEGIESFLMAERKAW--RVKQALAGYVQKFGNLSNAVVLGAGH 345
+ ++W + L W+ E F + + W + +AG V+ + + + V GH
Sbjct: 338 DFICNWLGNKAWTDVLPWKYDEEFASQKVRNWTASITDEVAGEVKSYKHFTYLRVFNGGH 397
Query: 346 LMPADQPLISQTMIEDWV 363
++P D P + +M+ +W+
Sbjct: 398 MVPFDVPENALSMVNEWI 415
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/378 (24%), Positives = 154/378 (40%), Gaps = 76/378 (20%)
Query: 48 GGPGCSSMLGNFLEVGPWRVTHRPNTTQQQLALEPNLGSWNRISGIVFLDNPIGTGLSFA 107
GGPGCSS+ G F +G P++ L N SWN + ++FLD P+ G S++
Sbjct: 52 GGPGCSSLTGLFFALG-------PSSIGPDLKPIGNPYSWNSNATVIFLDQPVNVGFSYS 104
Query: 108 VTNDEIPRNQSSVAKHLFAAINGFIDLDPLFKNR--PIYVTGESYAGKSIPSIGYHILKQ 165
++ N + K ++ + F D P + N+ ++ G SYAG IP IL
Sbjct: 105 GSSGV--SNTVAAGKDVYNFLELFFDQFPEYVNKGQDFHIAGASYAGHYIPVFASEILSH 162
Query: 166 NKRVPVSKREKLHGVAIGNGLTDPVSQVAVHALNAYFIG----LINGRQRVELEKAQRKA 221
R L V IGNGLTDP++Q + A G ++ + +E + +
Sbjct: 163 KDR-----NFNLTSVLIGNGLTDPLTQYNYYEPMACGEGGEPSVLPSEECSAMEDSLERC 217
Query: 222 IRLVK-----MGSWS------------------DATNARHDRKDPYATSL-------VTS 251
+ L++ WS N RKD +L +
Sbjct: 218 LGLIESCYDSQSVWSCVPATIYCNNAQLAPYQRTGRNVYDIRKDCEGGNLCYPTLQDIDD 277
Query: 252 LLRMDEVKKAFGAK----DTITFDVCSNV-----FMKALH---EDLM------------K 287
L D VK+A GA+ ++ FD+ N +MK H DL+ K
Sbjct: 278 YLNQDYVKEAVGAEVDHYESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDK 337
Query: 288 NLRDGVASTESWMNTLKWEGIESFLMAERKAW--RVKQALAGYVQKFGNLSNAVVLGAGH 345
+ ++W + L W+ E F + + W + +AG V+ + + + V GH
Sbjct: 338 DFICNWLGNKAWTDVLPWKYDEEFASQKVRNWTASITDEVAGEVKSYKHFTYLRVFNGGH 397
Query: 346 LMPADQPLISQTMIEDWV 363
++P D P + +M+ +W+
Sbjct: 398 MVPFDVPENALSMVNEWI 415
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 87/162 (53%), Gaps = 14/162 (8%)
Query: 48 GGPGCSSMLGNFLEVGPWRVTHRPNTTQQQLALEPNLGSWNRISGIVFLDNPIGTGLSFA 107
GGPGCSS+ G E GP+ V +P+ + LE N SWN I+ +++L++P G G S++
Sbjct: 56 GGPGCSSLDGLLTEHGPFLV--QPDG----VTLEYNPYSWNLIANVLYLESPAGVGFSYS 109
Query: 108 VTNDEIPRNQSSVAKHLFAAINGFIDLDPLFKNRPIYVTGESYAGKSIPSIGYHILKQNK 167
+ N + VA+ F A+ F L P +KN +++TGESYAG IP++ +++
Sbjct: 110 -DDKFYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQ--- 165
Query: 168 RVPVSKREKLHGVAIGNGLTDPVSQVAVHALNAYFIGLINGR 209
L G+A+GNGL+ AY+ GL+ R
Sbjct: 166 ----DPSMNLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNR 203
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 36/57 (63%), Gaps = 5/57 (8%)
Query: 312 LMAERKAWRVK-----QALAGYVQKFGNLSNAVVLGAGHLMPADQPLISQTMIEDWV 363
+ +R+ W VK + +AG+V++F +++ + GAGH++P D+PL + TM ++
Sbjct: 391 MEVQRRPWLVKYGDSGEQIAGFVKEFSHIAFLTIKGAGHMVPTDKPLAAFTMFSRFL 447
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 87/162 (53%), Gaps = 14/162 (8%)
Query: 48 GGPGCSSMLGNFLEVGPWRVTHRPNTTQQQLALEPNLGSWNRISGIVFLDNPIGTGLSFA 107
GGPGCSS+ G E GP+ V +P+ + LE N SWN I+ +++L++P G G S++
Sbjct: 58 GGPGCSSLDGLLTEHGPFLV--QPDG----VTLEYNPYSWNLIANVLYLESPAGVGFSYS 111
Query: 108 VTNDEIPRNQSSVAKHLFAAINGFIDLDPLFKNRPIYVTGESYAGKSIPSIGYHILKQNK 167
+ N + VA+ F A+ F L P +KN +++TGESYAG IP++ +++
Sbjct: 112 -DDKFYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQ--- 167
Query: 168 RVPVSKREKLHGVAIGNGLTDPVSQVAVHALNAYFIGLINGR 209
L G+A+GNGL+ AY+ GL+ R
Sbjct: 168 ----DPSMNLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNR 205
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 75/153 (49%), Gaps = 15/153 (9%)
Query: 48 GGPGCSSMLGNFLEVGPWRVTHRPNTTQQQLALEPNLGSWNRISGIVFLDNPIGTGLSFA 107
GGPGCSSM G +E GP+RV + +L L N GSW ++F+D P GTG S
Sbjct: 75 GGPGCSSMDGALVESGPFRVN-----SDGKLYL--NEGSWISKGDLLFIDQPTGTGFSVE 127
Query: 108 VTNDE--IPRNQ-----SSVAKHLFAAINGFIDLDPLFKNRPIYVTGESYAGKSIPSIGY 160
DE I +N+ V KH + + + P R I ++GESYAG+ IP
Sbjct: 128 QNKDEGKIDKNKFDEDLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFAN 187
Query: 161 HILKQNKRVPVS-KREKLHGVAIGNGLTDPVSQ 192
IL NK + L + IGNG DP +Q
Sbjct: 188 AILNHNKFSKIDGDTYDLKALLIGNGWIDPNTQ 220
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 12/101 (11%)
Query: 283 EDLMKNLRDGVASTESWMNTLKWEGIESF--------LMAERKAWRVKQALAGYVQKFGN 334
+DL+ N + GV T ++ LKW GI+ F + + K+ + +GYV+ N
Sbjct: 382 KDLICNNK-GVLDT---IDNLKWGGIKGFSDDAVSFDWIHKSKSTDDSEEFSGYVKYDRN 437
Query: 335 LSNAVVLGAGHLMPADQPLISQTMIEDWVLDKGLFANRKEN 375
L+ V A H++P D+ L+S+ +++ + D + N +N
Sbjct: 438 LTFVSVYNASHMVPFDKSLVSRGIVDIYSNDVMIIDNNGKN 478
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 87/189 (46%), Gaps = 16/189 (8%)
Query: 2 PKEAFPTRSGYLPVSPATGSAIFYAFYEAXXXXXXXXXXXXXXXXXGGPGCSSM-LGNFL 60
P F SGY+ V G ++FY EA GGPGCSS+ G
Sbjct: 13 PAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLN---GGPGCSSVAYGASE 69
Query: 61 EVGPWRVTHRPNTTQQQLALEPNLGSWNRISGIVFLDNPIGTGLSFAVTNDEIPRNQSSV 120
E+G +RV R L N WN+++ ++FLD+P G G S+ T+ +I + +
Sbjct: 70 ELGAFRVKPR------GAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNR 123
Query: 121 AKH-LFAAINGFIDLDPLFKNRPIYVTGESYAGKSIPSIGYHILKQNKRVPVSKREKLHG 179
H +A + + + P +K R Y+ GESYAG +P + L + PV L G
Sbjct: 124 TAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELS--QLVHRSKNPVI---NLKG 178
Query: 180 VAIGNGLTD 188
+GNGL D
Sbjct: 179 FMVGNGLID 187
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 87/189 (46%), Gaps = 16/189 (8%)
Query: 2 PKEAFPTRSGYLPVSPATGSAIFYAFYEAXXXXXXXXXXXXXXXXXGGPGCSSM-LGNFL 60
P F SGY+ V G ++FY EA GGPGCSS+ G
Sbjct: 14 PAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLN---GGPGCSSVAYGASE 70
Query: 61 EVGPWRVTHRPNTTQQQLALEPNLGSWNRISGIVFLDNPIGTGLSFAVTNDEIPRNQSSV 120
E+G +RV R L N WN+++ ++FLD+P G G S+ T+ +I + +
Sbjct: 71 ELGAFRVKPR------GAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNR 124
Query: 121 AKH-LFAAINGFIDLDPLFKNRPIYVTGESYAGKSIPSIGYHILKQNKRVPVSKREKLHG 179
H +A + + + P +K R Y+ GESYAG +P + L + PV L G
Sbjct: 125 TAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELS--QLVHRSKNPVI---NLKG 179
Query: 180 VAIGNGLTD 188
+GNGL D
Sbjct: 180 FMVGNGLID 188
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 87/189 (46%), Gaps = 16/189 (8%)
Query: 2 PKEAFPTRSGYLPVSPATGSAIFYAFYEAXXXXXXXXXXXXXXXXXGGPGCSSM-LGNFL 60
P F SGY+ V G ++FY EA GGPGCSS+ G
Sbjct: 18 PAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLN---GGPGCSSVAYGASE 74
Query: 61 EVGPWRVTHRPNTTQQQLALEPNLGSWNRISGIVFLDNPIGTGLSFAVTNDEIPRNQSSV 120
E+G +RV R L N WN+++ ++FLD+P G G S+ T+ +I + +
Sbjct: 75 ELGAFRVKPR------GAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNR 128
Query: 121 AKH-LFAAINGFIDLDPLFKNRPIYVTGESYAGKSIPSIGYHILKQNKRVPVSKREKLHG 179
H +A + + + P +K R Y+ GESYAG +P + L + PV L G
Sbjct: 129 TAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELS--QLVHRSKNPVI---NLKG 183
Query: 180 VAIGNGLTD 188
+GNGL D
Sbjct: 184 FMVGNGLID 192
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 88/189 (46%), Gaps = 16/189 (8%)
Query: 2 PKEAFPTRSGYLPVSPATGSAIFYAFYEAXXXXXXXXXXXXXXXXXGGPGCSSM-LGNFL 60
P F SGY+ V G ++FY EA GGPGCSS+ G
Sbjct: 18 PAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLN---GGPGCSSVAYGASE 74
Query: 61 EVGPWRVTHRPNTTQQQLALEPNLGSWNRISGIVFLDNPIGTGLSFAVTNDEIPRNQSSV 120
E+G +RV +P L N WN+++ ++FLD+P G G S+ T+ +I + +
Sbjct: 75 ELGAFRV--KPAGAGLVL----NEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNR 128
Query: 121 AKH-LFAAINGFIDLDPLFKNRPIYVTGESYAGKSIPSIGYHILKQNKRVPVSKREKLHG 179
H +A + + + P +K R Y+ GESYAG +P + L + PV L G
Sbjct: 129 TAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELS--QLVHRSKNPVI---NLKG 183
Query: 180 VAIGNGLTD 188
+GNGL D
Sbjct: 184 FMVGNGLID 192
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 14/208 (6%)
Query: 5 AFPTRSGYLPVSPATGSAIFYAFYEAXXXXXXXXXXXXXXXXXGGPGCSSM-LGNFLEVG 63
AF GY+ + G A++Y F EA GGPGCSS+ LG E+G
Sbjct: 21 AFGMYGGYVTIDDNNGRALYYWFQEADTADPAAAPLVLWLN--GGPGCSSIGLGAMQELG 78
Query: 64 PWRVTHRPNTTQQQLALEPNLGSWNRISGIVFLDNPIGTGLSFAVTNDEIPRNQSSVAKH 123
+RV +T + L L N +WN+ + I+F ++P G G S++ T+ ++ +A+
Sbjct: 79 AFRV----HTNGESLLL--NEYAWNKAANILFAESPAGVGFSYSNTSSDLSMGDDKMAQD 132
Query: 124 LFAAINGFIDLDPLFKNRPIYVTGESYAGKSIPSIGYHILKQNKRVPVSKREKLHGVAIG 183
+ + + + P + R Y+ GES G IP + + + P G+ +
Sbjct: 133 TYTFLVKWFERFPHYNYREFYIAGES--GHFIPQLSQVVYRNRNNSPFI---NFQGLLVS 187
Query: 184 NGLTDPVSQVAVHALNAYFIGLINGRQR 211
+GLT+ + + + GLI+ R
Sbjct: 188 SGLTNDHEDMIGMFESWWHHGLISDETR 215
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 35/55 (63%), Gaps = 5/55 (9%)
Query: 314 AERKAWRVK-----QALAGYVQKFGNLSNAVVLGAGHLMPADQPLISQTMIEDWV 363
+R+ W VK + +AG+V++F +++ + GAGH++P D+PL + TM ++
Sbjct: 95 VQRRPWLVKYGDSGEQIAGFVKEFSHIAFLTIKGAGHMVPTDKPLAAFTMFSRFL 149
>pdb|2DQW|A Chain A, Crystal Structure Of Dihydropteroate Synthase (Folp) From
Thermus Thermophilus Hb8
pdb|2DQW|B Chain B, Crystal Structure Of Dihydropteroate Synthase (Folp) From
Thermus Thermophilus Hb8
pdb|2DZA|A Chain A, Crystal Structure Of Dihydropteroate Synthase From Thermus
Thermophilus Hb8 In Complex With 4-Aminobenzoate
pdb|2DZA|B Chain B, Crystal Structure Of Dihydropteroate Synthase From Thermus
Thermophilus Hb8 In Complex With 4-Aminobenzoate
pdb|2DZB|A Chain A, Crystal Structure Of Dihydropteroate Synthase From Thermus
Thermophilus Hb8 In Complex With 6hmppp
pdb|2DZB|B Chain B, Crystal Structure Of Dihydropteroate Synthase From Thermus
Thermophilus Hb8 In Complex With 6hmppp
Length = 294
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 80 LEPNLGSWNRISGIVFLDNPIGTGLSFAVT-------NDEIPRNQSSVAKHLFAAINGF 131
LE NL R+ IV L +P+ GLS T D R SVA HLFA + G
Sbjct: 206 LEHNLALLRRLDEIVALGHPVLVGLSRKRTIGELSGVEDPAQRVHGSVAAHLFAVMKGV 264
>pdb|2VR2|A Chain A, Human Dihydropyrimidinase
Length = 541
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 240 RKDPYATSLVTSLLRMDEVKKAFGAKDTITFDVCSNVFMKALHEDLMKNLRDGVASTESW 299
R DP + +LL D++ D TF+ C KAL +D + +GV E
Sbjct: 324 RPDPSTPDFLMNLLANDDLTTT--GTDNCTFNTCQ----KALGKDDFTKIPNGVNGVEDR 377
Query: 300 MNTLKWEGIESFLMAERK 317
M+ + +G+ S M E +
Sbjct: 378 MSVIWEKGVHSGKMDENR 395
>pdb|1C0K|A Chain A, Crystal Structure Analysis Of D-Amino Acid Oxidase In
Complex With L-Lactate
pdb|1C0L|A Chain A, D-Amino Acid Oxidase: Structure Of Substrate Complexes At
Very High Resolution Reveal The Chemical Reacttion
Mechanism Of Flavin Dehydrogenation
pdb|1C0P|A Chain A, D-amino Acic Oxidase In Complex With D-alanine And A
Partially Occupied Biatomic Species
pdb|1C0I|A Chain A, Crystal Structure Of D-Amino Acid Oxidase In Complex With
Two Anthranylate Molecules
Length = 363
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 50 PGCSSMLGNFLEVGPWRVTHRPNTTQQ----QLALEPNLGSWNRISGIVFLDNPIG 101
PG + G VG W ++ P T Q+ L L+P + S I GI L + +G
Sbjct: 230 PGGEVICGGTYGVGDWDLSVNPETVQRILKHCLRLDPTISSDGTIEGIEVLRHNVG 285
>pdb|3DZD|A Chain A, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
pdb|3DZD|B Chain B, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
Length = 368
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 89/224 (39%), Gaps = 29/224 (12%)
Query: 142 PIYVTGESYAGKSIPSIGYHILKQNKRVPVSKREKLHGVAIGNGLTDPVSQVAVHALNAY 201
P+ +TGES GK I + H K V L+ +I L + S++ H A+
Sbjct: 154 PVLITGESGTGKEIVARLIHRYSGRKGAFVD----LNCASIPQELAE--SELFGHEKGAF 207
Query: 202 FIGLINGRQRVEL---------------EKAQRKAIRLVKMGSWSDATNARHDRKDPYAT 246
L + ++EL ++ Q K +R+++ GS++ + D
Sbjct: 208 TGALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVI 267
Query: 247 SLVTSLLRMDEVKKAFGAKDTITFDVCSNVFMKALHEDLMKNLRDGVASTESWMNTLKWE 306
S L +E+KK +D +++ L E +D + E ++ E
Sbjct: 268 SATNKNLE-EEIKKGNFREDLYYRLSVFQIYLPPLRE----RGKDVILLAEYFLKKFAKE 322
Query: 307 GIESF--LMAERKAWRVKQALAGYVQKFGNL-SNAVVLGAGHLM 347
++ L E K + KQ G V++ NL AV+L G ++
Sbjct: 323 YKKNCFELSEETKEYLXKQEWKGNVRELKNLIERAVILCEGEVI 366
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,935,274
Number of Sequences: 62578
Number of extensions: 437606
Number of successful extensions: 1050
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1006
Number of HSP's gapped (non-prelim): 20
length of query: 375
length of database: 14,973,337
effective HSP length: 100
effective length of query: 275
effective length of database: 8,715,537
effective search space: 2396772675
effective search space used: 2396772675
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)