BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042843
(484 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4H3O|A Chain A, Crystal Structure Of A New Form Of Lectin From Allium
Sativum At 2.17 A Resolution
pdb|4H3O|B Chain B, Crystal Structure Of A New Form Of Lectin From Allium
Sativum At 2.17 A Resolution
Length = 105
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 79 TIVWVANREQPVSDRFSSVLRISDGNLVLFNESQLPIWSTNLTATSRRSVEAVLLDEGNL 138
T W +N E S+VL+ SDGN V+++ S +W+++ T S + +L D+GN+
Sbjct: 38 TSTWASNTEIGGKSGCSAVLQ-SDGNFVVYDSSGRSLWASHSTRGSGNYI-LILQDDGNV 95
Query: 139 VL 140
++
Sbjct: 96 II 97
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 102 DGNLVLFNESQLPIWSTNLTATSRRSVEAVLLDEGNLVLRDLSNNLSKPLWQS 154
D NLVL++ S W++N + AVL +GN V+ D S + LW S
Sbjct: 28 DCNLVLYDHST-STWASNTEIGGKSGCSAVLQSDGNFVVYDSS---GRSLWAS 76
>pdb|1KJ1|D Chain D, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
pdb|1KJ1|Q Chain Q, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 33.9 bits (76), Expect = 0.19, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 102 DGNLVLFNESQLPIWSTNLTATSRRSVEAVLLDEGNLVLRDLSNNLSKPLWQS 154
D NLVL++ S +W+TN ++ +AVL +GN V+ D + LW S
Sbjct: 28 DCNLVLYDHST-AVWTTNTDIPGKKGCKAVLQSDGNFVVYDAE---GRSLWAS 76
Score = 30.4 bits (67), Expect = 2.5, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 79 TIVWVANREQPVSDRFSSVLRISDGNLVLFNESQLPIWSTNLTATSRRSVEAVLLDEGNL 138
T VW N + P +VL+ SDGN V+++ +W+++ + V VL ++GN+
Sbjct: 38 TAVWTTNTDIPGKKGCKAVLQ-SDGNFVVYDAEGRSLWASHSVRGNGNYV-LVLQEDGNV 95
Query: 139 VL 140
V+
Sbjct: 96 VI 97
>pdb|1KJ1|A Chain A, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
pdb|1KJ1|P Chain P, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 102 DGNLVLFNESQLPIWSTNLTATSRRSVEAVLLDEGNLVLRDLSNNLSKPLWQS 154
D NLVL++ S +W++N ++ +AVL +GN V+ D + LW S
Sbjct: 28 DCNLVLYDHST-SVWASNTGILGKKGCKAVLQSDGNFVVYDAE---GRSLWAS 76
>pdb|1BWU|Q Chain Q, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 102 DGNLVLFNESQLPIWSTNLTATSRRSVEAVLLDEGNLVLRDLSNNLSKPLWQS 154
D NLVL++ S +WS+N ++ +AVL +GN V+ D LW S
Sbjct: 28 DCNLVLYDHST-AVWSSNTDIPGKKGCKAVLQSDGNFVVYDAE---GASLWAS 76
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 79 TIVWVANREQPVSDRFSSVLRISDGNLVLFNESQLPIWSTNLTATSRRSVEAVLLDEGNL 138
T VW +N + P +VL+ SDGN V+++ +W+++ + V VL ++GN+
Sbjct: 38 TAVWSSNTDIPGKKGCKAVLQ-SDGNFVVYDAEGASLWASHSVRGNGNYV-LVLQEDGNV 95
Query: 139 VL 140
V+
Sbjct: 96 VI 97
>pdb|1BWU|P Chain P, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 106
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 102 DGNLVLFNESQLPIWSTNLTATSRRSVEAVLLDEGNLVLRDLSNNLSKPLWQS 154
D NLVL++ S +W++N ++ +AVL +GN V+ D + LW S
Sbjct: 28 DCNLVLYDHST-SVWASNTGILGKKGCKAVLQADGNFVVYDAE---GRSLWAS 76
>pdb|1BWU|D Chain D, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 102 DGNLVLFNESQLPIWSTNLTATSRRSVEAVLLDEGNLVLRDLSNNLSKPLWQS 154
D NLVL++ S +WS+N ++ +AVL +GN V+ D LW S
Sbjct: 28 DCNLVLYDHST-AVWSSNTDIPGKKGCKAVLQSDGNFVVYDAE---GASLWAS 76
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 79 TIVWVANREQPVSDRFSSVLRISDGNLVLFNESQLPIWSTNLTATSRRSVEAVLLDEGNL 138
T VW +N + P +VL+ SDGN V+++ +W+++ + V VL ++GN+
Sbjct: 38 TAVWSSNTDIPGKKGCKAVLQ-SDGNFVVYDAEGASLWASHSVRGNGNYV-LVLQEDGNV 95
Query: 139 VL 140
V+
Sbjct: 96 VI 97
>pdb|1BWU|A Chain A, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 106
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 102 DGNLVLFNESQLPIWSTNLTATSRRSVEAVLLDEGNLVLRDLSNNLSKPLWQS 154
D NLVL++ S +W++N ++ AVL +GN V+ D + LW S
Sbjct: 28 DCNLVLYDHST-SVWASNTGILGKKGCRAVLQSDGNFVVYDAE---GRSLWAS 76
>pdb|1MSA|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|B Chain B, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|C Chain C, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|D Chain D, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1NIV|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With Mannose-Alpha
1, 3-Methyl-D-Mannose
pdb|1NIV|C Chain C, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With Mannose-Alpha
1, 3-Methyl-D-Mannose
pdb|1JPC|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With
Mannose-Alpha1,6-(Mannose-Alpha1,3)-Mannose-
Alpha1,6-(Mannose-Alpha1,3)-Mannose
Length = 109
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 101 SDGNLVLFNESQLPIWSTNLTATSRRSVEAVLLDEGNLVL 140
+DGNLV++N S PIW++N T + +L + N+V+
Sbjct: 58 TDGNLVVYNPSNKPIWASN-TGGQNGNYVCILQKDRNVVI 96
>pdb|3DMM|C Chain C, Crystal Structure Of The Cd8 Alpha BetaH-2dd Complex
Length = 166
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 222 WDE---NAKIFSMVPEMNQNYIYNFSYVSNENESYF 254
WDE ++K+FS + + N Y+ + S ENE Y+
Sbjct: 70 WDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYY 105
>pdb|2JQI|A Chain A, Nmr Structure Of The Rad53 Fha1 Domain In Complex With A
Phosphothreonien Peptide Derived From Rad53 Scd1
pdb|2A0T|A Chain A, Nmr Structure Of The Fha1 Domain Of Rad53 In Complex With
A Biological Relevant Phosphopeptide Derived From Madt1
Length = 151
Score = 28.5 bits (62), Expect = 7.6, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 13/60 (21%)
Query: 119 NLTATSRRSVEAVLLDEGNLVLRDLSNNLSKPLWQSFDHPAHTWIPGMKLTFNKRNNVSQ 178
N++ S + + +L ++GNL+L D+S N TW+ G K+ N +SQ
Sbjct: 67 NISRLSNKHFQILLGEDGNLLLNDISTN-------------GTWLNGQKVEKNSNQLLSQ 113
>pdb|3M7H|A Chain A, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp.
pdb|3M7H|B Chain B, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp.
pdb|3M7J|A Chain A, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp. In Complex With Met-Mannose
pdb|3M7J|B Chain B, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp. In Complex With Met-Mannose
Length = 276
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 41/97 (42%), Gaps = 21/97 (21%)
Query: 81 VWVANREQPVSDRFSSVLRISDGNLVLF--------NESQLPIWST-NLTATSR---RSV 128
VWVAN +QP S LR L + + S+ +W T N T TS
Sbjct: 55 VWVANEQQPFSSTIP--LRNKKAPLAFYVQYGAFLDDYSRRRVWLTDNSTFTSNDQWNRT 112
Query: 129 EAVLLDEGNLVLRDLSNNLSKPLWQSFDHPAHTWIPG 165
VL D+GN+VL D S LW PA +PG
Sbjct: 113 HLVLQDDGNIVLVD-----SLALWNG--TPAIPLVPG 142
>pdb|1J4P|A Chain A, Nmr Structure Of The Fha1 Domain Of Rad53 In Complex With
A Rad9-Derived Phosphothreonine (At T155) Peptide
pdb|1J4Q|A Chain A, Nmr Structure Of The Fha1 Domain Of Rad53 In Complex With
A Rad9-Derived Phosphothreonine (At T192) Peptide
pdb|1K3N|A Chain A, Nmr Structure Of The Fha1 Domain Of Rad53 In Complex With
A Rad9-Derived Phosphothreonine (At T155) Peptide
pdb|1K3Q|A Chain A, Nmr Structure Of The Fha1 Domain Of Rad53 In Complex With
A Rad9-Derived Phosphothreonine (At T192) Peptide
pdb|1J4O|A Chain A, Refined Nmr Structure Of The Fha1 Domain Of Yeast Rad53
pdb|1K3J|A Chain A, Refined Nmr Structure Of The Fha1 Domain Of Yeast Rad53
Length = 151
Score = 28.5 bits (62), Expect = 8.0, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 13/60 (21%)
Query: 119 NLTATSRRSVEAVLLDEGNLVLRDLSNNLSKPLWQSFDHPAHTWIPGMKLTFNKRNNVSQ 178
N++ S + + +L ++GNL+L D+S N TW+ G K+ N +SQ
Sbjct: 67 NISRLSNKHFQILLGEDGNLLLNDISTN-------------GTWLNGQKVEKNSNQLLSQ 113
>pdb|1G6G|A Chain A, X-Ray Structure Of The N-Terminal Fha Domain From S.
Cerevisiae Rad53p In Complex With A Phosphothreonine
Peptide At 1.6 A Resolution
pdb|1G6G|B Chain B, X-Ray Structure Of The N-Terminal Fha Domain From S.
Cerevisiae Rad53p In Complex With A Phosphothreonine
Peptide At 1.6 A Resolution
Length = 127
Score = 28.5 bits (62), Expect = 8.0, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 13/60 (21%)
Query: 119 NLTATSRRSVEAVLLDEGNLVLRDLSNNLSKPLWQSFDHPAHTWIPGMKLTFNKRNNVSQ 178
N++ S + + +L ++GNL+L D+S N TW+ G K+ N +SQ
Sbjct: 52 NISRLSNKHFQILLGEDGNLLLNDISTN-------------GTWLNGQKVEKNSNQLLSQ 98
>pdb|1NPL|A Chain A, Mannose-Specific Agglutinin (Lectin) From Daffodil
(Narcissus Pseudonarcissus) Bulbs In Complex With
Mannose-Alpha1,3-Mannose
pdb|3DZW|A Chain A, Structure Of Narcissus Pseudonarcissus Lectin Complex With
Mannobiose At 1.7 A Resolution, Form Ii
pdb|3DZW|B Chain B, Structure Of Narcissus Pseudonarcissus Lectin Complex With
Mannobiose At 1.7 A Resolution, Form Ii
Length = 109
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 92 DRFSSVLRISDGNLVLFNESQLPIWSTNLTATSRRSVEAVLLDEGNLVL 140
DR + SDGNLV+++ PIW++N T + VL + N+V+
Sbjct: 49 DRRCHLSMQSDGNLVVYSPRNNPIWASN-TGGENGNYVCVLQKDRNVVI 96
>pdb|1BQH|G Chain G, Murine Cd8aa Ectodomain Fragment In Complex With H-2kbVSV8
pdb|1BQH|H Chain H, Murine Cd8aa Ectodomain Fragment In Complex With H-2kbVSV8
pdb|1BQH|I Chain I, Murine Cd8aa Ectodomain Fragment In Complex With H-2kbVSV8
pdb|1BQH|K Chain K, Murine Cd8aa Ectodomain Fragment In Complex With H-2kbVSV8
Length = 129
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 222 WDE---NAKIFSMVPEMNQNYIYNFSYVSNENESYF 254
WDE ++K+FS + + N Y+ + S ENE Y+
Sbjct: 65 WDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYY 100
>pdb|1NEZ|G Chain G, The Crystal Structure Of A TlCD8AA COMPLEX AT 2.1A
Resolution:implications For Memory T Cell Generation,
Co-Receptor Preference And Affinity
pdb|1NEZ|H Chain H, The Crystal Structure Of A TlCD8AA COMPLEX AT 2.1A
Resolution:implications For Memory T Cell Generation,
Co-Receptor Preference And Affinity
Length = 128
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 222 WDE---NAKIFSMVPEMNQNYIYNFSYVSNENESYF 254
WDE ++K+FS + + N Y+ + S ENE Y+
Sbjct: 65 WDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYY 100
>pdb|3B9K|A Chain A, Crystal Structure Of Cd8alpha-Beta In Complex With Yts
156.7 Fab
pdb|3B9K|E Chain E, Crystal Structure Of Cd8alpha-Beta In Complex With Yts
156.7 Fab
Length = 131
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 222 WDE---NAKIFSMVPEMNQNYIYNFSYVSNENESYF 254
WDE ++K+FS + + N Y+ + S ENE Y+
Sbjct: 65 WDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYY 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,843,348
Number of Sequences: 62578
Number of extensions: 567477
Number of successful extensions: 1517
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1498
Number of HSP's gapped (non-prelim): 40
length of query: 484
length of database: 14,973,337
effective HSP length: 103
effective length of query: 381
effective length of database: 8,527,803
effective search space: 3249092943
effective search space used: 3249092943
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)